Query 003871
Match_columns 790
No_of_seqs 776 out of 4775
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 13:30:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 6.6E-68 1.4E-72 518.6 31.3 496 1-765 8-515 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 2.3E-58 5E-63 437.8 27.7 487 13-762 7-508 (508)
3 KOG0271 Notchless-like WD40 re 100.0 1.8E-50 3.9E-55 392.7 27.6 326 368-761 109-479 (480)
4 KOG0271 Notchless-like WD40 re 100.0 1.2E-46 2.6E-51 366.1 24.2 321 318-708 106-479 (480)
5 KOG0319 WD40-repeat-containing 100.0 3.8E-42 8.1E-47 361.3 24.6 396 307-765 127-621 (775)
6 KOG0319 WD40-repeat-containing 100.0 1.8E-40 3.9E-45 348.7 28.3 410 307-768 84-582 (775)
7 KOG0272 U4/U6 small nuclear ri 100.0 1E-40 2.3E-45 329.4 22.7 279 439-762 173-459 (459)
8 KOG0286 G-protein beta subunit 100.0 2.3E-39 5E-44 305.5 30.2 290 368-708 49-343 (343)
9 KOG0273 Beta-transducin family 100.0 2.1E-39 4.5E-44 324.2 30.8 275 382-710 236-523 (524)
10 KOG0291 WD40-repeat-containing 100.0 9.3E-39 2E-43 335.7 37.0 410 307-768 77-555 (893)
11 KOG0272 U4/U6 small nuclear ri 100.0 2.7E-40 5.8E-45 326.5 21.5 272 385-708 179-458 (459)
12 KOG0318 WD40 repeat stress pro 100.0 3.5E-38 7.6E-43 319.2 36.3 423 279-768 72-565 (603)
13 KOG0291 WD40-repeat-containing 100.0 7.8E-38 1.7E-42 328.8 37.7 332 382-765 308-711 (893)
14 KOG0286 G-protein beta subunit 100.0 2E-37 4.2E-42 292.5 33.1 281 438-761 52-343 (343)
15 KOG0306 WD40-repeat-containing 100.0 6.1E-37 1.3E-41 321.9 32.1 401 307-764 87-623 (888)
16 KOG0279 G protein beta subunit 100.0 4.4E-36 9.6E-41 281.9 32.8 293 438-764 12-314 (315)
17 KOG0273 Beta-transducin family 100.0 3.9E-36 8.5E-41 300.7 32.0 330 368-763 173-523 (524)
18 KOG0318 WD40 repeat stress pro 100.0 1.1E-35 2.3E-40 301.2 35.4 379 307-763 170-602 (603)
19 KOG0279 G protein beta subunit 100.0 4.9E-36 1.1E-40 281.6 28.6 290 367-711 8-314 (315)
20 KOG0306 WD40-repeat-containing 100.0 3E-35 6.4E-40 309.3 29.8 388 278-764 119-665 (888)
21 KOG0315 G-protein beta subunit 100.0 7.9E-34 1.7E-38 262.1 30.5 282 407-731 13-302 (311)
22 KOG0296 Angio-associated migra 100.0 1.6E-33 3.4E-38 274.0 30.7 330 368-763 58-398 (399)
23 KOG0265 U5 snRNP-specific prot 100.0 1.2E-33 2.5E-38 268.2 27.6 280 438-760 44-335 (338)
24 KOG0315 G-protein beta subunit 100.0 2.6E-33 5.7E-38 258.7 28.8 270 454-768 11-293 (311)
25 KOG0645 WD40 repeat protein [G 100.0 1.8E-32 4E-37 256.5 32.2 289 438-763 11-311 (312)
26 KOG0284 Polyadenylation factor 100.0 1.2E-34 2.6E-39 285.2 18.1 279 441-764 96-381 (464)
27 KOG0295 WD40 repeat-containing 100.0 1.9E-33 4E-38 273.2 25.1 279 439-762 106-405 (406)
28 KOG0263 Transcription initiati 100.0 5.1E-34 1.1E-38 303.9 23.0 274 441-768 378-654 (707)
29 KOG0645 WD40 repeat protein [G 100.0 1.9E-32 4E-37 256.4 28.9 285 368-710 8-311 (312)
30 KOG0295 WD40 repeat-containing 100.0 1.7E-33 3.6E-38 273.6 22.6 284 368-709 102-405 (406)
31 KOG1539 WD repeat protein [Gen 100.0 6.1E-33 1.3E-37 295.5 28.9 398 307-763 182-648 (910)
32 KOG0284 Polyadenylation factor 100.0 2.6E-34 5.5E-39 282.9 16.1 275 385-710 100-380 (464)
33 KOG0282 mRNA splicing factor [ 100.0 7.3E-34 1.6E-38 285.8 18.2 283 438-761 211-503 (503)
34 KOG0285 Pleiotropic regulator 100.0 1.6E-32 3.6E-37 265.5 25.8 287 438-764 148-440 (460)
35 KOG0266 WD40 repeat-containing 100.0 1.1E-31 2.3E-36 295.9 34.0 288 440-763 158-454 (456)
36 KOG0265 U5 snRNP-specific prot 100.0 5.5E-32 1.2E-36 256.8 25.4 289 368-708 41-336 (338)
37 KOG0293 WD40 repeat-containing 100.0 3.5E-33 7.5E-38 274.8 17.3 418 195-768 17-475 (519)
38 KOG0296 Angio-associated migra 100.0 8.3E-32 1.8E-36 262.0 26.5 319 319-710 56-398 (399)
39 KOG0263 Transcription initiati 100.0 1.6E-32 3.5E-37 292.5 21.7 265 385-712 382-651 (707)
40 KOG0276 Vesicle coat complex C 100.0 4.3E-31 9.3E-36 272.5 30.2 278 320-665 6-297 (794)
41 cd00200 WD40 WD40 domain, foun 100.0 5.8E-30 1.2E-34 266.4 38.0 278 439-761 7-289 (289)
42 KOG0278 Serine/threonine kinas 100.0 4.6E-32 1E-36 250.3 18.3 294 438-778 11-314 (334)
43 KOG0316 Conserved WD40 repeat- 100.0 1.2E-30 2.5E-35 239.2 26.8 278 439-763 15-299 (307)
44 PLN00181 protein SPA1-RELATED; 100.0 5E-30 1.1E-34 304.1 39.7 316 413-762 457-792 (793)
45 KOG1408 WD40 repeat protein [F 100.0 1.5E-30 3.2E-35 271.7 29.7 402 304-764 54-714 (1080)
46 KOG0292 Vesicle coat complex C 100.0 2.4E-30 5.2E-35 276.3 30.9 352 321-763 3-397 (1202)
47 KOG0316 Conserved WD40 repeat- 100.0 5.9E-31 1.3E-35 241.1 22.5 243 504-768 15-262 (307)
48 KOG0285 Pleiotropic regulator 100.0 7.4E-31 1.6E-35 254.1 23.9 286 368-711 145-440 (460)
49 cd00200 WD40 WD40 domain, foun 100.0 9.8E-30 2.1E-34 264.7 34.5 282 368-708 3-289 (289)
50 KOG0281 Beta-TrCP (transducin 100.0 4.1E-32 9E-37 261.4 12.9 271 332-671 200-482 (499)
51 KOG0276 Vesicle coat complex C 100.0 4.5E-30 9.8E-35 265.0 27.0 276 439-759 11-295 (794)
52 KOG0292 Vesicle coat complex C 100.0 4.4E-30 9.6E-35 274.3 27.4 291 440-768 8-326 (1202)
53 KOG0266 WD40 repeat-containing 100.0 9.6E-30 2.1E-34 280.4 30.0 290 368-710 152-454 (456)
54 PLN00181 protein SPA1-RELATED; 100.0 7.5E-29 1.6E-33 294.1 35.9 312 343-709 457-792 (793)
55 KOG0283 WD40 repeat-containing 100.0 4.1E-29 8.9E-34 269.0 27.1 271 439-712 265-578 (712)
56 KOG0281 Beta-TrCP (transducin 100.0 4.7E-31 1E-35 254.1 9.8 259 278-619 207-480 (499)
57 KOG0282 mRNA splicing factor [ 100.0 8.6E-30 1.9E-34 256.6 17.3 287 368-708 208-503 (503)
58 KOG0313 Microtubule binding pr 100.0 3.9E-28 8.5E-33 237.5 26.8 273 440-763 104-418 (423)
59 KOG0313 Microtubule binding pr 100.0 3.2E-28 6.9E-33 238.1 25.7 282 372-710 103-418 (423)
60 KOG1407 WD40 repeat protein [F 100.0 1.1E-27 2.4E-32 223.2 28.0 280 438-763 17-311 (313)
61 KOG1446 Histone H3 (Lys4) meth 100.0 7.8E-27 1.7E-31 224.5 34.1 286 440-766 13-306 (311)
62 KOG0640 mRNA cleavage stimulat 100.0 1.6E-28 3.6E-33 233.5 22.1 298 439-762 110-425 (430)
63 KOG0973 Histone transcription 100.0 3.2E-28 7E-33 268.5 26.3 323 368-766 6-358 (942)
64 KOG0288 WD40 repeat protein Ti 100.0 6E-29 1.3E-33 245.6 17.7 281 438-761 172-459 (459)
65 KOG0772 Uncharacterized conser 100.0 5.9E-28 1.3E-32 244.4 24.5 294 439-765 165-490 (641)
66 KOG0643 Translation initiation 100.0 1.1E-27 2.3E-32 224.0 24.0 288 438-764 7-318 (327)
67 KOG0643 Translation initiation 100.0 3.1E-27 6.7E-32 220.9 25.3 284 368-712 4-319 (327)
68 KOG0278 Serine/threonine kinas 100.0 1.6E-28 3.5E-33 227.0 16.2 289 368-715 8-302 (334)
69 KOG0288 WD40 repeat protein Ti 100.0 5.8E-28 1.3E-32 238.7 18.5 285 368-707 169-458 (459)
70 KOG0310 Conserved WD40 repeat- 100.0 5.4E-27 1.2E-31 237.0 25.8 282 440-766 25-312 (487)
71 KOG0640 mRNA cleavage stimulat 100.0 3.9E-27 8.5E-32 224.1 23.1 295 368-710 106-426 (430)
72 KOG0305 Anaphase promoting com 100.0 5.7E-27 1.2E-31 246.8 26.8 263 408-712 192-463 (484)
73 KOG0641 WD40 repeat protein [G 100.0 1.5E-25 3.2E-30 204.1 31.5 303 440-763 31-349 (350)
74 KOG2106 Uncharacterized conser 100.0 1.7E-25 3.7E-30 226.1 33.8 372 307-765 134-523 (626)
75 KOG1063 RNA polymerase II elon 100.0 1.8E-26 3.8E-31 241.8 27.1 389 321-763 261-763 (764)
76 KOG0274 Cdc4 and related F-box 100.0 3.9E-26 8.5E-31 250.3 31.3 276 385-718 212-490 (537)
77 KOG0277 Peroxisomal targeting 100.0 5.5E-27 1.2E-31 217.7 20.4 237 505-762 59-308 (311)
78 KOG1408 WD40 repeat protein [F 100.0 1.3E-26 2.8E-31 242.4 25.3 321 341-711 343-714 (1080)
79 KOG1446 Histone H3 (Lys4) meth 100.0 1.8E-25 3.9E-30 215.1 31.2 246 505-769 13-268 (311)
80 KOG0294 WD40 repeat-containing 100.0 7.2E-26 1.6E-30 216.7 27.9 246 497-765 34-283 (362)
81 KOG1063 RNA polymerase II elon 100.0 1.9E-26 4.2E-31 241.5 25.7 444 280-763 71-699 (764)
82 KOG1539 WD repeat protein [Gen 100.0 2.2E-26 4.8E-31 245.8 26.4 387 280-711 174-649 (910)
83 KOG0283 WD40 repeat-containing 100.0 9.1E-27 2E-31 251.0 23.5 240 504-763 265-576 (712)
84 PTZ00421 coronin; Provisional 100.0 2.9E-25 6.3E-30 243.5 35.7 274 440-742 19-313 (493)
85 KOG2048 WD40 repeat protein [G 99.9 2.8E-25 6.1E-30 232.7 33.1 394 307-766 47-551 (691)
86 KOG0275 Conserved WD40 repeat- 99.9 2.6E-27 5.6E-32 226.3 16.1 238 440-708 262-507 (508)
87 KOG0274 Cdc4 and related F-box 99.9 1.1E-25 2.4E-30 246.8 31.1 277 440-769 207-488 (537)
88 KOG2096 WD40 repeat protein [G 99.9 7.6E-26 1.7E-30 216.3 25.3 304 368-708 80-400 (420)
89 KOG0772 Uncharacterized conser 99.9 1.7E-26 3.7E-31 233.9 21.8 302 368-710 161-487 (641)
90 KOG0300 WD40 repeat-containing 99.9 4.6E-26 1E-30 217.3 21.9 309 368-712 142-478 (481)
91 KOG0268 Sof1-like rRNA process 99.9 7.2E-27 1.6E-31 227.2 16.5 289 368-718 60-353 (433)
92 KOG1407 WD40 repeat protein [F 99.9 4.1E-25 8.8E-30 206.2 25.0 274 368-701 14-293 (313)
93 KOG0305 Anaphase promoting com 99.9 3.8E-25 8.2E-30 233.1 27.9 270 446-765 182-463 (484)
94 KOG0268 Sof1-like rRNA process 99.9 2.1E-26 4.7E-31 223.9 16.6 281 438-767 63-349 (433)
95 PTZ00421 coronin; Provisional 99.9 3.2E-24 6.9E-29 235.3 35.2 285 398-712 30-333 (493)
96 KOG0289 mRNA splicing factor [ 99.9 6.6E-25 1.4E-29 218.2 26.3 268 398-709 229-505 (506)
97 KOG0641 WD40 repeat protein [G 99.9 4.6E-24 1E-28 194.4 29.3 286 385-710 36-349 (350)
98 KOG0308 Conserved WD40 repeat- 99.9 1.1E-25 2.4E-30 234.2 20.7 326 398-767 35-397 (735)
99 KOG0277 Peroxisomal targeting 99.9 2.6E-25 5.5E-30 206.7 20.6 261 412-709 36-308 (311)
100 KOG2106 Uncharacterized conser 99.9 3.7E-24 8E-29 216.5 29.1 398 307-762 180-625 (626)
101 PTZ00420 coronin; Provisional 99.9 1.6E-23 3.4E-28 230.6 35.5 222 524-766 53-296 (568)
102 KOG0310 Conserved WD40 repeat- 99.9 2E-24 4.3E-29 218.6 25.7 274 385-712 30-311 (487)
103 KOG0299 U3 snoRNP-associated p 99.9 1.4E-24 3.1E-29 217.9 23.6 280 368-698 136-443 (479)
104 KOG0289 mRNA splicing factor [ 99.9 6E-24 1.3E-28 211.5 27.6 278 441-762 219-505 (506)
105 KOG2096 WD40 repeat protein [G 99.9 6E-24 1.3E-28 203.4 26.2 292 438-765 83-404 (420)
106 KOG1274 WD40 repeat protein [G 99.9 7.8E-24 1.7E-28 229.1 29.6 283 439-760 11-297 (933)
107 KOG0301 Phospholipase A2-activ 99.9 3.4E-24 7.3E-29 225.0 25.4 273 438-763 11-288 (745)
108 KOG0639 Transducin-like enhanc 99.9 1E-24 2.2E-29 219.9 18.6 285 372-762 417-703 (705)
109 KOG0300 WD40 repeat-containing 99.9 5.3E-24 1.1E-28 203.3 22.3 288 438-766 145-479 (481)
110 KOG0299 U3 snoRNP-associated p 99.9 1.4E-23 3E-28 210.8 26.3 294 439-763 140-456 (479)
111 PTZ00420 coronin; Provisional 99.9 1.2E-22 2.5E-27 223.7 36.1 220 504-742 72-316 (568)
112 KOG0647 mRNA export protein (c 99.9 2E-23 4.2E-28 199.0 24.7 269 440-751 26-311 (347)
113 KOG0308 Conserved WD40 repeat- 99.9 2.7E-24 5.8E-29 224.0 17.7 339 279-718 38-401 (735)
114 KOG0301 Phospholipase A2-activ 99.9 1.6E-23 3.5E-28 219.9 23.1 276 317-666 4-288 (745)
115 KOG4283 Transcription-coupled 99.9 8.2E-23 1.8E-27 193.6 25.2 300 439-764 41-366 (397)
116 KOG2048 WD40 repeat protein [G 99.9 5.6E-22 1.2E-26 208.1 32.9 287 441-763 25-319 (691)
117 KOG0647 mRNA export protein (c 99.9 7.2E-23 1.6E-27 195.2 23.7 275 382-699 28-312 (347)
118 KOG1332 Vesicle coat complex C 99.9 2E-23 4.3E-28 193.1 18.4 253 504-773 9-295 (299)
119 KOG0294 WD40 repeat-containing 99.9 3.2E-22 7E-27 191.8 27.3 265 408-712 5-283 (362)
120 KOG1036 Mitotic spindle checkp 99.9 3.1E-22 6.8E-27 191.8 26.5 268 440-753 12-294 (323)
121 KOG0264 Nucleosome remodeling 99.9 4.3E-23 9.3E-28 207.6 21.0 252 439-711 122-405 (422)
122 KOG0973 Histone transcription 99.9 4.4E-23 9.5E-28 228.2 22.8 288 325-667 10-356 (942)
123 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.5E-21 1.2E-25 201.5 37.1 273 407-719 4-288 (300)
124 KOG0646 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 204.0 23.0 245 516-770 50-314 (476)
125 KOG1332 Vesicle coat complex C 99.9 3.7E-23 7.9E-28 191.3 17.0 246 438-711 8-287 (299)
126 KOG1273 WD40 repeat protein [G 99.9 5.6E-22 1.2E-26 189.8 24.2 286 444-774 26-332 (405)
127 KOG0264 Nucleosome remodeling 99.9 1.7E-22 3.7E-27 203.3 21.8 256 372-666 122-404 (422)
128 KOG0646 WD40 repeat protein [G 99.9 2.4E-22 5.2E-27 202.4 22.4 285 408-742 11-329 (476)
129 KOG2055 WD40 repeat protein [G 99.9 4.7E-22 1E-26 199.7 23.5 283 385-710 217-512 (514)
130 KOG2055 WD40 repeat protein [G 99.9 1.2E-21 2.5E-26 196.9 25.5 283 441-763 213-512 (514)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.7E-20 3.6E-25 197.8 35.3 270 454-771 2-287 (300)
132 KOG4283 Transcription-coupled 99.9 1.2E-21 2.6E-26 185.7 23.4 291 372-709 41-364 (397)
133 KOG1445 Tumor-specific antigen 99.9 2.7E-22 5.9E-27 207.5 20.7 200 507-714 628-848 (1012)
134 KOG1036 Mitotic spindle checkp 99.9 1.8E-21 3.8E-26 186.7 24.3 267 385-700 17-294 (323)
135 KOG1274 WD40 repeat protein [G 99.9 3.8E-21 8.2E-26 208.4 26.8 274 372-707 11-297 (933)
136 KOG0321 WD40 repeat-containing 99.9 1.5E-21 3.2E-26 203.2 22.3 292 447-765 55-393 (720)
137 KOG0269 WD40 repeat-containing 99.9 4.9E-22 1.1E-26 211.2 18.7 279 398-712 49-342 (839)
138 KOG0269 WD40 repeat-containing 99.9 8.2E-22 1.8E-26 209.5 19.7 288 441-764 39-341 (839)
139 KOG1034 Transcriptional repres 99.9 3.8E-21 8.2E-26 185.4 22.0 293 439-763 36-383 (385)
140 KOG0650 WD40 repeat nucleolar 99.9 3.8E-21 8.3E-26 198.6 22.0 314 368-761 394-733 (733)
141 KOG2445 Nuclear pore complex c 99.9 3.1E-20 6.8E-25 177.6 26.5 260 438-764 10-319 (361)
142 KOG0267 Microtubule severing p 99.9 1.2E-22 2.5E-27 214.2 10.4 229 504-754 26-259 (825)
143 KOG0639 Transducin-like enhanc 99.9 1.6E-21 3.5E-26 197.0 16.7 277 325-709 417-703 (705)
144 KOG1273 WD40 repeat protein [G 99.9 1.5E-20 3.3E-25 180.0 22.3 277 385-712 27-324 (405)
145 KOG4328 WD40 protein [Function 99.9 2.6E-20 5.5E-25 187.2 23.7 291 440-763 185-495 (498)
146 KOG0267 Microtubule severing p 99.9 3.9E-22 8.4E-27 210.3 10.3 248 408-702 8-260 (825)
147 KOG4378 Nuclear protein COP1 [ 99.9 3.1E-20 6.8E-25 187.6 22.3 286 409-742 7-303 (673)
148 KOG2919 Guanine nucleotide-bin 99.9 4.3E-20 9.4E-25 177.6 22.1 278 443-754 51-361 (406)
149 KOG1538 Uncharacterized conser 99.9 9.8E-20 2.1E-24 189.8 25.3 259 332-665 15-292 (1081)
150 KOG2445 Nuclear pore complex c 99.9 1.4E-19 3.1E-24 173.2 23.7 257 370-666 9-318 (361)
151 KOG4378 Nuclear protein COP1 [ 99.9 3.5E-20 7.5E-25 187.3 19.3 285 343-692 11-305 (673)
152 KOG1445 Tumor-specific antigen 99.8 1.8E-19 3.8E-24 186.9 24.1 146 605-768 600-755 (1012)
153 KOG0270 WD40 repeat-containing 99.8 1.9E-19 4.1E-24 180.5 23.0 234 516-768 192-454 (463)
154 KOG0302 Ribosome Assembly prot 99.8 1.6E-19 3.6E-24 177.1 19.5 245 504-762 149-437 (440)
155 KOG1009 Chromatin assembly com 99.8 2.2E-18 4.9E-23 171.0 26.8 300 441-766 13-375 (434)
156 KOG4328 WD40 protein [Function 99.8 6.3E-19 1.4E-23 177.3 20.5 297 369-711 181-496 (498)
157 KOG0649 WD40 repeat protein [G 99.8 1.9E-17 4.1E-22 153.4 27.1 286 443-761 12-314 (325)
158 KOG1538 Uncharacterized conser 99.8 1E-18 2.3E-23 182.2 20.3 266 385-710 16-293 (1081)
159 KOG0307 Vesicle coat complex C 99.8 4.1E-19 8.9E-24 197.7 18.2 243 385-669 68-330 (1049)
160 COG2319 FOG: WD40 repeat [Gene 99.8 2.7E-16 5.9E-21 173.4 40.9 361 322-764 60-443 (466)
161 KOG0270 WD40 repeat-containing 99.8 9.2E-19 2E-23 175.7 18.3 248 452-715 191-454 (463)
162 KOG1009 Chromatin assembly com 99.8 7.5E-18 1.6E-22 167.3 22.4 304 385-715 17-377 (434)
163 KOG0321 WD40 repeat-containing 99.8 4.6E-18 1E-22 177.5 21.9 278 407-712 67-393 (720)
164 KOG0302 Ribosome Assembly prot 99.8 1.8E-18 4E-23 169.8 17.6 206 543-764 149-379 (440)
165 KOG1963 WD40 repeat protein [G 99.8 1.5E-16 3.2E-21 173.0 31.8 396 334-770 21-500 (792)
166 KOG1963 WD40 repeat protein [G 99.8 1.7E-16 3.7E-21 172.6 32.0 401 307-765 37-540 (792)
167 KOG1034 Transcriptional repres 99.8 3.2E-18 6.9E-23 165.4 16.2 245 341-616 112-383 (385)
168 KOG0307 Vesicle coat complex C 99.8 1.3E-18 2.8E-23 193.8 15.4 274 411-713 36-330 (1049)
169 KOG0650 WD40 repeat nucleolar 99.8 1.2E-17 2.5E-22 173.1 20.6 234 504-761 398-678 (733)
170 COG2319 FOG: WD40 repeat [Gene 99.8 1.9E-15 4.1E-20 166.7 39.8 330 370-768 61-405 (466)
171 KOG2919 Guanine nucleotide-bin 99.8 1E-16 2.2E-21 154.6 24.4 275 385-701 53-361 (406)
172 KOG0322 G-protein beta subunit 99.8 1.1E-17 2.4E-22 157.0 16.4 281 368-709 8-322 (323)
173 KOG0649 WD40 repeat protein [G 99.8 1.9E-16 4.2E-21 146.8 24.1 280 385-707 14-313 (325)
174 KOG1007 WD repeat protein TSSC 99.8 6.9E-17 1.5E-21 153.4 20.3 280 342-666 38-361 (370)
175 KOG4227 WD40 repeat protein [G 99.7 2.5E-16 5.4E-21 155.1 23.1 312 438-777 53-399 (609)
176 KOG1334 WD40 repeat protein [G 99.7 1.9E-17 4E-22 167.9 14.6 296 438-766 139-469 (559)
177 PRK11028 6-phosphogluconolacto 99.7 3.1E-15 6.7E-20 159.7 32.3 276 407-714 5-310 (330)
178 KOG1188 WD40 repeat protein [G 99.7 1.6E-16 3.4E-21 154.8 19.5 273 454-763 41-346 (376)
179 KOG1007 WD repeat protein TSSC 99.7 4.6E-16 1E-20 147.8 22.0 206 544-763 122-361 (370)
180 KOG0303 Actin-binding protein 99.7 1.8E-16 3.8E-21 156.9 19.1 202 503-713 78-297 (472)
181 KOG1310 WD40 repeat protein [G 99.7 7.3E-16 1.6E-20 158.2 21.7 208 438-667 47-304 (758)
182 KOG1517 Guanine nucleotide bin 99.7 1.7E-15 3.7E-20 166.5 25.1 294 442-766 1065-1384(1387)
183 PRK11028 6-phosphogluconolacto 99.7 2.2E-14 4.7E-19 153.2 33.5 272 456-764 4-305 (330)
184 KOG1188 WD40 repeat protein [G 99.7 3.8E-16 8.3E-21 152.1 17.8 276 407-710 43-346 (376)
185 KOG0642 Cell-cycle nuclear pro 99.7 1.4E-16 3.1E-21 164.7 15.7 246 504-768 292-566 (577)
186 KOG1517 Guanine nucleotide bin 99.7 1.9E-15 4.2E-20 166.1 25.2 298 385-713 1068-1384(1387)
187 KOG0290 Conserved WD40 repeat- 99.7 4.1E-15 8.8E-20 141.7 24.0 284 441-759 44-361 (364)
188 KOG0644 Uncharacterized conser 99.7 2.2E-17 4.8E-22 176.8 8.9 237 504-768 188-431 (1113)
189 KOG0642 Cell-cycle nuclear pro 99.7 2.8E-16 6E-21 162.6 15.8 275 368-719 288-570 (577)
190 KOG2110 Uncharacterized conser 99.7 8.1E-14 1.8E-18 137.5 31.7 235 441-711 5-249 (391)
191 KOG0303 Actin-binding protein 99.7 3.1E-15 6.8E-20 148.1 21.6 206 540-768 76-299 (472)
192 KOG2110 Uncharacterized conser 99.7 3.1E-14 6.7E-19 140.4 27.8 237 506-766 5-251 (391)
193 KOG4227 WD40 repeat protein [G 99.7 2E-15 4.3E-20 148.8 19.4 295 368-710 50-387 (609)
194 KOG0290 Conserved WD40 repeat- 99.7 8.7E-15 1.9E-19 139.4 21.8 271 343-663 72-362 (364)
195 KOG1240 Protein kinase contain 99.7 7.6E-15 1.7E-19 164.1 24.8 357 368-761 1042-1431(1431)
196 KOG4497 Uncharacterized conser 99.7 2.6E-15 5.7E-20 145.1 18.4 340 334-757 13-426 (447)
197 KOG1587 Cytoplasmic dynein int 99.7 2E-14 4.3E-19 156.9 26.2 263 414-711 222-517 (555)
198 KOG0644 Uncharacterized conser 99.7 5.3E-16 1.1E-20 166.4 12.0 281 316-671 179-473 (1113)
199 KOG0322 G-protein beta subunit 99.7 1.7E-15 3.6E-20 142.5 13.7 243 504-762 12-322 (323)
200 KOG1524 WD40 repeat-containing 99.6 6.3E-15 1.4E-19 151.0 18.5 202 404-660 75-280 (737)
201 KOG1523 Actin-related protein 99.6 3E-14 6.5E-19 137.8 20.3 242 441-760 10-275 (361)
202 KOG1524 WD40 repeat-containing 99.6 8.9E-15 1.9E-19 149.9 17.5 205 454-708 76-284 (737)
203 KOG2321 WD40 repeat protein [G 99.6 3.7E-14 8.1E-19 146.8 22.0 273 385-711 55-344 (703)
204 KOG0771 Prolactin regulatory e 99.6 5.5E-15 1.2E-19 148.5 15.2 197 549-764 148-355 (398)
205 KOG4497 Uncharacterized conser 99.6 1.6E-14 3.4E-19 139.8 17.0 305 386-765 13-393 (447)
206 PRK01742 tolB translocation pr 99.6 2.6E-14 5.5E-19 157.5 20.5 243 334-691 170-426 (429)
207 KOG2139 WD40 repeat protein [G 99.6 3.8E-13 8.3E-18 132.1 25.8 296 385-709 102-430 (445)
208 KOG2139 WD40 repeat protein [G 99.6 3.9E-13 8.5E-18 132.1 25.4 282 441-763 98-431 (445)
209 PRK01742 tolB translocation pr 99.6 1.1E-13 2.4E-18 152.5 24.4 207 524-763 183-401 (429)
210 KOG2321 WD40 repeat protein [G 99.6 2.7E-13 6E-18 140.5 24.3 293 439-772 49-354 (703)
211 KOG1587 Cytoplasmic dynein int 99.6 8.1E-14 1.7E-18 152.2 21.4 277 343-667 221-517 (555)
212 PF02239 Cytochrom_D1: Cytochr 99.6 2.2E-12 4.8E-17 137.4 32.0 315 408-772 10-356 (369)
213 KOG1334 WD40 repeat protein [G 99.6 1.3E-14 2.9E-19 147.4 14.0 300 367-713 135-469 (559)
214 KOG2111 Uncharacterized conser 99.6 6.9E-13 1.5E-17 128.6 24.6 237 508-766 7-259 (346)
215 KOG1272 WD40-repeat-containing 99.6 1E-14 2.2E-19 147.4 12.4 279 442-769 130-415 (545)
216 KOG0771 Prolactin regulatory e 99.6 3E-14 6.5E-19 143.2 14.9 196 510-711 148-355 (398)
217 KOG2659 LisH motif-containing 99.6 6.5E-15 1.4E-19 138.5 9.4 161 12-184 25-198 (228)
218 KOG1523 Actin-related protein 99.6 2.3E-13 4.9E-18 131.9 19.9 230 385-657 14-269 (361)
219 KOG1240 Protein kinase contain 99.6 1.1E-12 2.3E-17 147.3 27.2 256 504-768 1046-1339(1431)
220 KOG2394 WD40 protein DMR-N9 [G 99.6 2.2E-13 4.7E-18 140.3 19.7 243 509-765 126-454 (636)
221 PRK05137 tolB translocation pr 99.5 2.8E-12 6E-17 141.9 28.4 215 525-767 182-416 (435)
222 PF02239 Cytochrom_D1: Cytochr 99.5 1.2E-12 2.5E-17 139.6 24.2 314 342-719 14-356 (369)
223 KOG2315 Predicted translation 99.5 9.1E-12 2E-16 129.6 29.3 318 385-765 38-392 (566)
224 KOG2111 Uncharacterized conser 99.5 1.4E-11 3.1E-16 119.5 28.2 216 442-668 6-258 (346)
225 PRK03629 tolB translocation pr 99.5 3.5E-12 7.7E-17 140.2 27.6 234 414-742 179-427 (429)
226 PRK03629 tolB translocation pr 99.5 3.7E-12 7.9E-17 140.1 27.0 213 525-765 179-408 (429)
227 PF10282 Lactonase: Lactonase, 99.5 1.5E-10 3.3E-15 123.7 36.9 278 414-717 13-331 (345)
228 PRK04922 tolB translocation pr 99.5 3.9E-12 8.4E-17 140.6 25.3 213 525-765 184-413 (433)
229 COG2706 3-carboxymuconate cycl 99.5 1.8E-10 4E-15 114.7 34.1 280 413-716 15-329 (346)
230 PRK05137 tolB translocation pr 99.5 7.6E-12 1.6E-16 138.4 27.3 218 414-714 182-416 (435)
231 KOG1272 WD40-repeat-containing 99.5 1.2E-13 2.7E-18 139.7 9.3 266 385-707 133-406 (545)
232 PF08662 eIF2A: Eukaryotic tra 99.5 3.3E-12 7.1E-17 123.7 18.9 150 590-764 9-180 (194)
233 PRK04922 tolB translocation pr 99.5 6.3E-12 1.4E-16 138.9 23.3 233 347-690 185-432 (433)
234 PRK02889 tolB translocation pr 99.5 1.9E-11 4.2E-16 134.6 27.0 203 525-755 176-392 (427)
235 COG5354 Uncharacterized protei 99.5 7.2E-11 1.6E-15 121.5 28.5 326 385-766 36-398 (561)
236 PF08662 eIF2A: Eukaryotic tra 99.4 1.1E-11 2.3E-16 120.1 20.6 153 549-718 9-186 (194)
237 KOG3881 Uncharacterized conser 99.4 1.1E-11 2.4E-16 123.4 20.9 250 441-717 55-327 (412)
238 KOG2394 WD40 protein DMR-N9 [G 99.4 6.2E-12 1.4E-16 129.7 18.9 162 518-690 187-384 (636)
239 PRK02889 tolB translocation pr 99.4 1.1E-11 2.3E-16 136.6 22.5 246 334-691 165-425 (427)
240 KOG3881 Uncharacterized conser 99.4 8.7E-12 1.9E-16 124.2 18.6 210 408-648 119-342 (412)
241 KOG1310 WD40 repeat protein [G 99.4 1.2E-12 2.6E-17 134.9 12.7 215 368-619 44-306 (758)
242 KOG1354 Serine/threonine prote 99.4 6.6E-11 1.4E-15 115.9 21.9 264 441-713 25-362 (433)
243 KOG2314 Translation initiation 99.4 1.4E-10 3E-15 120.3 25.4 325 385-775 214-596 (698)
244 KOG2315 Predicted translation 99.4 1.1E-10 2.4E-15 121.7 24.3 130 566-712 251-392 (566)
245 TIGR02800 propeller_TolB tol-p 99.4 2.6E-10 5.7E-15 126.2 28.0 210 525-762 170-396 (417)
246 PF10282 Lactonase: Lactonase, 99.3 4.9E-09 1.1E-13 112.1 34.9 243 506-763 36-322 (345)
247 COG4946 Uncharacterized protei 99.3 1.8E-09 3.9E-14 110.0 28.8 145 584-752 357-507 (668)
248 KOG1409 Uncharacterized conser 99.3 1.4E-10 2.9E-15 113.8 19.6 247 368-667 18-271 (404)
249 PRK00178 tolB translocation pr 99.3 6.8E-10 1.5E-14 123.1 28.1 213 526-766 180-409 (430)
250 PRK01029 tolB translocation pr 99.3 3.8E-10 8.2E-15 123.7 25.0 245 345-692 164-426 (428)
251 PRK04792 tolB translocation pr 99.3 1.6E-09 3.4E-14 119.8 27.4 169 548-742 264-446 (448)
252 PRK04792 tolB translocation pr 99.3 1.3E-09 2.7E-14 120.6 26.6 210 526-763 199-425 (448)
253 COG5354 Uncharacterized protei 99.3 2.2E-09 4.7E-14 110.8 25.8 265 341-712 105-397 (561)
254 PRK00178 tolB translocation pr 99.3 1.6E-09 3.5E-14 120.1 27.5 215 415-713 180-409 (430)
255 PRK01029 tolB translocation pr 99.3 1.5E-09 3.3E-14 118.9 26.6 221 526-768 166-408 (428)
256 KOG0974 WD-repeat protein WDR6 99.3 1.4E-10 3.1E-15 129.1 17.8 186 558-766 101-291 (967)
257 KOG0974 WD-repeat protein WDR6 99.2 4.9E-10 1.1E-14 125.0 20.1 184 516-711 99-289 (967)
258 TIGR02658 TTQ_MADH_Hv methylam 99.2 4E-08 8.6E-13 102.4 33.1 268 414-719 27-339 (352)
259 KOG1409 Uncharacterized conser 99.2 6.2E-10 1.3E-14 109.3 18.3 334 318-711 15-395 (404)
260 COG2706 3-carboxymuconate cycl 99.2 4.9E-08 1.1E-12 97.6 31.4 246 504-764 37-322 (346)
261 KOG0280 Uncharacterized conser 99.2 2.1E-09 4.5E-14 103.5 20.5 271 412-712 44-335 (339)
262 TIGR02800 propeller_TolB tol-p 99.2 1.7E-09 3.6E-14 119.8 23.2 224 343-675 167-405 (417)
263 TIGR03300 assembly_YfgL outer 99.2 1.5E-08 3.3E-13 110.4 30.2 274 453-773 65-348 (377)
264 COG4946 Uncharacterized protei 99.2 2.7E-08 5.7E-13 101.8 28.3 224 449-697 274-505 (668)
265 KOG1354 Serine/threonine prote 99.2 7.5E-10 1.6E-14 108.6 16.1 257 505-766 24-362 (433)
266 KOG2041 WD40 repeat protein [G 99.2 3E-09 6.6E-14 113.3 21.8 300 441-771 14-344 (1189)
267 TIGR03300 assembly_YfgL outer 99.2 3.9E-08 8.4E-13 107.2 31.2 294 400-760 65-376 (377)
268 KOG0280 Uncharacterized conser 99.2 4.8E-09 1E-13 101.1 20.3 247 505-767 68-337 (339)
269 KOG1912 WD40 repeat protein [G 99.1 5E-09 1.1E-13 112.9 21.9 412 307-765 35-553 (1062)
270 TIGR02658 TTQ_MADH_Hv methylam 99.1 5.6E-08 1.2E-12 101.4 29.1 265 344-675 27-339 (352)
271 KOG4547 WD40 repeat-containing 99.1 1.2E-08 2.6E-13 107.7 23.6 189 398-617 3-221 (541)
272 KOG4547 WD40 repeat-containing 99.1 2.2E-08 4.8E-13 105.7 24.0 197 450-666 2-220 (541)
273 PF04762 IKI3: IKI3 family; I 99.1 3.8E-07 8.3E-12 108.1 37.0 354 385-765 79-521 (928)
274 PRK04043 tolB translocation pr 99.1 6.2E-08 1.3E-12 105.5 27.4 210 525-765 169-402 (419)
275 PLN02919 haloacid dehalogenase 99.0 2.1E-07 4.6E-12 112.4 32.5 254 510-767 571-892 (1057)
276 KOG2314 Translation initiation 99.0 7.8E-08 1.7E-12 100.3 24.1 298 334-701 215-558 (698)
277 KOG1064 RAVE (regulator of V-A 99.0 1.3E-09 2.8E-14 127.0 11.0 177 396-618 2216-2400(2439)
278 PLN02919 haloacid dehalogenase 99.0 4.9E-07 1.1E-11 109.3 31.9 257 445-714 571-892 (1057)
279 PF13360 PQQ_2: PQQ-like domai 99.0 2.2E-07 4.8E-12 94.1 24.6 225 524-770 2-237 (238)
280 KOG4532 WD40-like repeat conta 99.0 1.9E-07 4.1E-12 89.1 21.7 241 516-766 84-334 (344)
281 KOG1064 RAVE (regulator of V-A 99.0 6.4E-09 1.4E-13 121.4 14.1 192 505-719 2207-2407(2439)
282 KOG2041 WD40 repeat protein [G 98.9 7.4E-08 1.6E-12 103.0 20.6 266 385-696 18-324 (1189)
283 KOG4190 Uncharacterized conser 98.9 5.8E-09 1.3E-13 108.0 11.0 286 368-706 729-1032(1034)
284 KOG0309 Conserved WD40 repeat- 98.9 1.4E-08 3E-13 109.0 13.7 280 385-711 28-340 (1081)
285 KOG1912 WD40 repeat protein [G 98.9 1.2E-07 2.6E-12 102.6 20.3 290 440-766 14-367 (1062)
286 KOG0309 Conserved WD40 repeat- 98.9 2.5E-08 5.5E-13 107.0 13.9 281 441-764 24-340 (1081)
287 PRK11138 outer membrane biogen 98.9 1.4E-06 3E-11 95.4 28.1 286 453-772 69-362 (394)
288 PRK11138 outer membrane biogen 98.9 3.3E-06 7.2E-11 92.4 31.0 259 453-762 120-393 (394)
289 KOG0396 Uncharacterized conser 98.8 1.6E-08 3.5E-13 100.8 10.9 119 12-132 114-241 (389)
290 PRK04043 tolB translocation pr 98.8 2.3E-06 5E-11 93.3 28.1 169 527-713 215-403 (419)
291 KOG4532 WD40-like repeat conta 98.8 7.4E-07 1.6E-11 85.1 20.7 233 453-712 84-333 (344)
292 KOG4190 Uncharacterized conser 98.8 2.1E-08 4.6E-13 103.9 11.3 282 438-759 732-1032(1034)
293 PF15492 Nbas_N: Neuroblastoma 98.8 1.7E-06 3.7E-11 84.2 23.4 216 551-772 3-270 (282)
294 PF04762 IKI3: IKI3 family; I 98.8 4.3E-06 9.3E-11 99.3 31.8 235 505-762 74-378 (928)
295 PF08450 SGL: SMP-30/Gluconola 98.8 2.6E-05 5.7E-10 79.3 31.9 215 511-751 4-243 (246)
296 KOG3914 WD repeat protein WDR4 98.8 9.7E-08 2.1E-12 96.4 12.8 161 588-768 64-228 (390)
297 PF07433 DUF1513: Protein of u 98.7 8.8E-06 1.9E-10 81.9 26.4 217 516-753 17-276 (305)
298 PF10607 CLTH: CTLH/CRA C-term 98.7 2.1E-08 4.6E-13 92.6 7.2 130 45-187 4-138 (145)
299 PF13360 PQQ_2: PQQ-like domai 98.7 6E-06 1.3E-10 83.6 25.5 195 515-716 35-236 (238)
300 PF08450 SGL: SMP-30/Gluconola 98.7 2.4E-05 5.2E-10 79.6 29.8 218 446-698 4-243 (246)
301 COG5170 CDC55 Serine/threonine 98.7 4E-07 8.6E-12 88.5 15.1 262 440-710 25-367 (460)
302 PF15492 Nbas_N: Neuroblastoma 98.7 2.3E-05 5E-10 76.5 25.3 200 516-720 9-269 (282)
303 KOG2695 WD40 repeat protein [G 98.6 9.7E-08 2.1E-12 94.2 8.6 163 551-720 217-386 (425)
304 KOG3914 WD repeat protein WDR4 98.6 6.9E-07 1.5E-11 90.4 13.8 149 516-675 74-232 (390)
305 PF07433 DUF1513: Protein of u 98.6 3.4E-05 7.4E-10 77.8 24.9 179 512-700 56-276 (305)
306 KOG0882 Cyclophilin-related pe 98.6 1.9E-06 4.1E-11 88.1 16.0 290 440-760 8-369 (558)
307 KOG0882 Cyclophilin-related pe 98.5 5.2E-07 1.1E-11 92.1 11.1 215 544-768 8-236 (558)
308 KOG1832 HIV-1 Vpr-binding prot 98.5 4.8E-08 1E-12 106.8 3.6 256 368-699 1095-1378(1516)
309 KOG4714 Nucleoporin [Nuclear s 98.5 6.5E-07 1.4E-11 85.2 9.9 197 548-764 39-255 (319)
310 KOG4714 Nucleoporin [Nuclear s 98.5 1.3E-06 2.9E-11 83.1 11.9 192 509-711 39-255 (319)
311 PF06433 Me-amine-dh_H: Methyl 98.5 0.00012 2.6E-09 74.7 26.7 271 414-719 17-329 (342)
312 COG5170 CDC55 Serine/threonine 98.5 1.8E-06 4E-11 84.0 12.6 262 384-664 29-365 (460)
313 KOG1832 HIV-1 Vpr-binding prot 98.5 1.2E-07 2.5E-12 103.9 4.3 194 504-718 1099-1299(1516)
314 cd00216 PQQ_DH Dehydrogenases 98.5 0.00014 3E-09 81.6 29.0 289 453-772 61-433 (488)
315 PRK02888 nitrous-oxide reducta 98.5 1.3E-05 2.8E-10 88.1 19.7 187 516-711 141-405 (635)
316 KOG2114 Vacuolar assembly/sort 98.4 1.9E-05 4.2E-10 87.4 20.1 203 552-769 30-249 (933)
317 smart00668 CTLH C-terminal to 98.4 1.9E-07 4.2E-12 70.8 3.6 54 45-99 4-57 (58)
318 KOG1275 PAB-dependent poly(A) 98.4 5.1E-06 1.1E-10 92.1 15.7 179 516-708 147-340 (1118)
319 PF00400 WD40: WD domain, G-be 98.4 9.2E-07 2E-11 60.8 6.4 39 576-614 1-39 (39)
320 KOG2066 Vacuolar assembly/sort 98.4 1.3E-05 2.8E-10 88.1 17.6 190 546-764 40-234 (846)
321 KOG2066 Vacuolar assembly/sort 98.3 2.2E-05 4.7E-10 86.4 17.7 185 505-710 38-233 (846)
322 KOG2695 WD40 repeat protein [G 98.3 1.9E-06 4.2E-11 85.2 8.4 149 408-584 228-386 (425)
323 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00085 1.8E-08 64.5 25.5 140 454-617 24-166 (354)
324 KOG1645 RING-finger-containing 98.3 0.00018 3.8E-09 73.2 20.8 240 504-764 191-462 (463)
325 KOG1920 IkappaB kinase complex 98.2 0.00014 3.1E-09 83.8 22.4 239 385-669 72-325 (1265)
326 cd00216 PQQ_DH Dehydrogenases 98.2 0.0014 3E-08 73.7 30.2 236 454-720 111-434 (488)
327 KOG1920 IkappaB kinase complex 98.2 0.00038 8.1E-09 80.4 24.9 234 505-762 67-364 (1265)
328 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0046 1E-07 69.7 32.5 292 453-773 69-500 (527)
329 PF00400 WD40: WD domain, G-be 98.1 7E-06 1.5E-10 56.3 6.1 38 535-572 1-39 (39)
330 PF14583 Pectate_lyase22: Olig 98.1 0.006 1.3E-07 63.8 29.9 280 448-765 42-383 (386)
331 PF04053 Coatomer_WDAD: Coatom 98.1 0.0004 8.7E-09 75.6 22.1 221 441-711 32-263 (443)
332 PF11768 DUF3312: Protein of u 98.1 0.00054 1.2E-08 73.8 22.2 110 506-617 205-330 (545)
333 KOG3621 WD40 repeat-containing 98.1 0.00052 1.1E-08 74.9 22.0 278 440-766 32-356 (726)
334 PF11768 DUF3312: Protein of u 98.1 0.0024 5.2E-08 69.0 26.5 113 639-765 207-331 (545)
335 KOG3617 WD40 and TPR repeat-co 98.1 8.4E-05 1.8E-09 81.8 15.5 99 516-616 27-131 (1416)
336 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.00091 2E-08 71.9 23.6 226 506-751 42-345 (353)
337 KOG2114 Vacuolar assembly/sort 98.0 0.00079 1.7E-08 75.0 22.2 203 508-718 27-251 (933)
338 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.00074 1.6E-08 72.6 21.5 264 348-654 25-344 (353)
339 PF14583 Pectate_lyase22: Olig 98.0 0.0044 9.6E-08 64.8 25.3 287 385-708 39-379 (386)
340 PF08596 Lgl_C: Lethal giant l 98.0 0.0034 7.4E-08 67.6 25.3 270 443-754 3-327 (395)
341 smart00667 LisH Lissencephaly 98.0 1.2E-05 2.6E-10 53.2 4.2 32 12-43 2-33 (34)
342 KOG1008 Uncharacterized conser 97.9 3.3E-06 7.1E-11 90.2 1.7 204 546-764 57-276 (783)
343 COG0823 TolB Periplasmic compo 97.9 0.00062 1.4E-08 73.9 18.9 179 525-718 173-366 (425)
344 PF04053 Coatomer_WDAD: Coatom 97.9 0.0025 5.4E-08 69.5 23.3 220 506-765 32-264 (443)
345 PRK02888 nitrous-oxide reducta 97.9 0.0026 5.7E-08 70.4 22.7 92 658-764 296-405 (635)
346 KOG1275 PAB-dependent poly(A) 97.9 0.00032 6.9E-09 78.4 15.2 150 508-665 179-341 (1118)
347 COG0823 TolB Periplasmic compo 97.8 0.00088 1.9E-08 72.8 18.1 183 385-654 196-386 (425)
348 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.043 9.3E-07 62.0 32.1 245 454-720 121-500 (527)
349 PF06977 SdiA-regulated: SdiA- 97.8 0.011 2.3E-07 59.1 24.2 213 540-760 16-247 (248)
350 PF08513 LisH: LisH; InterPro 97.8 3.4E-05 7.4E-10 47.3 3.7 27 14-40 1-27 (27)
351 KOG1645 RING-finger-containing 97.8 0.00085 1.8E-08 68.4 15.7 92 527-619 175-269 (463)
352 COG3386 Gluconolactonase [Carb 97.8 0.011 2.4E-07 61.2 24.1 218 448-699 31-274 (307)
353 PF04841 Vps16_N: Vps16, N-ter 97.8 0.018 3.8E-07 63.0 26.9 166 507-691 81-270 (410)
354 KOG3617 WD40 and TPR repeat-co 97.7 0.0011 2.3E-08 73.5 16.4 70 385-472 63-132 (1416)
355 PF06977 SdiA-regulated: SdiA- 97.7 0.023 5E-07 56.8 24.7 198 504-707 19-247 (248)
356 PF04841 Vps16_N: Vps16, N-ter 97.7 0.031 6.6E-07 61.1 27.4 183 526-719 62-255 (410)
357 PF06433 Me-amine-dh_H: Methyl 97.7 0.081 1.8E-06 54.5 27.8 228 525-771 67-328 (342)
358 KOG1008 Uncharacterized conser 97.6 4.8E-05 1E-09 81.6 4.7 196 505-710 55-275 (783)
359 COG3391 Uncharacterized conser 97.6 0.023 4.9E-07 61.7 25.3 203 509-719 76-292 (381)
360 COG3490 Uncharacterized protei 97.6 0.018 3.8E-07 56.6 20.9 234 511-764 72-349 (366)
361 KOG2817 Predicted E3 ubiquitin 97.6 0.00034 7.4E-09 71.6 9.6 118 12-131 115-246 (394)
362 COG3391 Uncharacterized conser 97.6 0.073 1.6E-06 57.7 28.3 197 548-766 76-286 (381)
363 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.022 4.7E-07 55.2 20.7 148 551-712 16-167 (354)
364 PRK13616 lipoprotein LpqB; Pro 97.5 0.013 2.9E-07 66.5 22.6 211 546-776 350-581 (591)
365 PF03178 CPSF_A: CPSF A subuni 97.5 0.024 5.2E-07 60.1 22.8 216 525-762 2-264 (321)
366 KOG3621 WD40 repeat-containing 97.4 0.0015 3.3E-08 71.4 12.6 147 547-699 35-188 (726)
367 PF00780 CNH: CNH domain; Int 97.3 0.16 3.5E-06 52.4 26.2 225 516-768 7-260 (275)
368 PF05096 Glu_cyclase_2: Glutam 97.3 0.065 1.4E-06 53.3 21.5 199 536-751 34-249 (264)
369 PF00780 CNH: CNH domain; Int 97.2 0.27 5.8E-06 50.7 26.8 238 399-676 6-265 (275)
370 PF08596 Lgl_C: Lethal giant l 97.2 0.073 1.6E-06 57.4 22.6 207 547-768 3-295 (395)
371 PF03178 CPSF_A: CPSF A subuni 97.2 0.031 6.7E-07 59.3 19.8 180 566-764 2-203 (321)
372 KOG1897 Damage-specific DNA bi 97.2 0.59 1.3E-05 54.0 29.2 329 385-761 534-896 (1096)
373 COG3386 Gluconolactonase [Carb 97.1 0.29 6.2E-06 50.9 24.7 205 524-753 46-275 (307)
374 PF02897 Peptidase_S9_N: Proly 97.1 0.57 1.2E-05 51.6 29.0 241 444-715 126-409 (414)
375 COG3490 Uncharacterized protei 97.0 0.14 3.1E-06 50.5 19.8 226 535-772 58-319 (366)
376 smart00320 WD40 WD40 repeats. 96.9 0.0023 4.9E-08 42.5 5.4 39 576-614 2-40 (40)
377 KOG2395 Protein involved in va 96.9 0.048 1E-06 58.2 17.2 137 519-666 349-500 (644)
378 PF02897 Peptidase_S9_N: Proly 96.9 0.37 8E-06 53.1 25.9 240 386-671 128-409 (414)
379 PF08553 VID27: VID27 cytoplas 96.9 0.02 4.4E-07 66.0 15.7 144 559-709 497-646 (794)
380 KOG4640 Anaphase-promoting com 96.9 0.0043 9.3E-08 67.2 9.6 94 545-647 20-115 (665)
381 PF08553 VID27: VID27 cytoplas 96.9 0.025 5.4E-07 65.3 16.3 132 524-665 503-646 (794)
382 PF05694 SBP56: 56kDa selenium 96.9 0.49 1.1E-05 50.3 24.1 230 452-699 86-392 (461)
383 KOG2395 Protein involved in va 96.8 0.038 8.2E-07 58.9 14.9 144 558-709 348-499 (644)
384 PHA02713 hypothetical protein; 96.8 0.14 3E-06 58.5 21.0 197 556-777 303-545 (557)
385 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.1 2.2E-06 44.3 14.5 98 548-661 2-109 (111)
386 PRK13616 lipoprotein LpqB; Pro 96.7 0.099 2.1E-06 59.6 19.3 185 507-705 350-563 (591)
387 TIGR03074 PQQ_membr_DH membran 96.7 0.53 1.2E-05 55.3 25.4 201 516-717 194-484 (764)
388 PF05096 Glu_cyclase_2: Glutam 96.6 0.87 1.9E-05 45.5 23.7 185 507-699 45-249 (264)
389 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.12 2.6E-06 43.9 13.8 97 509-611 2-109 (111)
390 KOG4499 Ca2+-binding protein R 96.6 0.49 1.1E-05 45.5 19.2 150 546-697 109-271 (310)
391 KOG4441 Proteins containing BT 96.5 0.25 5.5E-06 56.3 21.0 224 525-774 301-555 (571)
392 KOG4640 Anaphase-promoting com 96.5 0.012 2.6E-07 63.9 9.2 93 587-690 21-115 (665)
393 smart00320 WD40 WD40 repeats. 96.4 0.0093 2E-07 39.4 5.5 38 535-572 2-40 (40)
394 KOG2444 WD40 repeat protein [G 96.4 0.0054 1.2E-07 58.4 5.4 104 649-764 70-178 (238)
395 PF14870 PSII_BNR: Photosynthe 96.3 1.6 3.4E-05 45.2 32.2 278 441-760 16-301 (302)
396 COG3204 Uncharacterized protei 96.2 0.29 6.4E-06 48.9 16.3 168 582-763 81-263 (316)
397 PHA02713 hypothetical protein; 96.2 0.42 9.2E-06 54.6 20.2 185 516-715 304-538 (557)
398 TIGR03074 PQQ_membr_DH membran 96.0 1 2.2E-05 53.0 22.6 209 557-771 195-485 (764)
399 KOG2079 Vacuolar assembly/sort 96.0 0.02 4.4E-07 65.9 8.4 99 597-703 98-198 (1206)
400 COG3204 Uncharacterized protei 96.0 2 4.3E-05 43.2 21.5 176 542-719 82-271 (316)
401 KOG4441 Proteins containing BT 95.9 0.88 1.9E-05 52.0 21.1 193 509-714 325-550 (571)
402 PF12894 Apc4_WD40: Anaphase-p 95.9 0.02 4.2E-07 40.6 4.9 35 732-770 13-47 (47)
403 KOG1897 Damage-specific DNA bi 95.8 5.3 0.00011 46.7 31.4 323 398-765 267-615 (1096)
404 PF14655 RAB3GAP2_N: Rab3 GTPa 95.6 4.3 9.3E-05 43.9 24.1 81 638-719 308-407 (415)
405 PF14870 PSII_BNR: Photosynthe 95.6 3.4 7.5E-05 42.7 28.8 159 542-707 141-301 (302)
406 KOG2079 Vacuolar assembly/sort 95.6 0.047 1E-06 63.0 8.9 104 649-763 99-203 (1206)
407 KOG4499 Ca2+-binding protein R 95.4 2.8 6E-05 40.6 19.5 204 524-750 36-271 (310)
408 PF10647 Gmad1: Lipoprotein Lp 95.3 3.7 8E-05 41.6 22.9 146 547-702 25-187 (253)
409 PF10647 Gmad1: Lipoprotein Lp 95.3 1.6 3.5E-05 44.3 18.3 151 588-755 25-187 (253)
410 COG4257 Vgb Streptogramin lyas 95.1 2.9 6.2E-05 41.5 18.1 204 548-771 64-268 (353)
411 PF12234 Rav1p_C: RAVE protein 95.0 0.83 1.8E-05 51.7 16.3 114 639-763 31-156 (631)
412 PF05694 SBP56: 56kDa selenium 94.9 6.6 0.00014 42.1 23.8 190 516-712 87-344 (461)
413 COG3823 Glutamine cyclotransfe 94.9 1.7 3.7E-05 41.2 15.2 180 511-698 50-247 (262)
414 PRK13684 Ycf48-like protein; P 94.8 6.5 0.00014 41.7 31.9 179 563-763 149-331 (334)
415 PRK10115 protease 2; Provision 94.8 11 0.00025 44.2 32.2 173 526-709 154-343 (686)
416 PF14727 PHTB1_N: PTHB1 N-term 94.7 7.7 0.00017 42.1 32.5 277 453-769 37-366 (418)
417 COG1520 FOG: WD40-like repeat 94.7 3.4 7.4E-05 44.7 20.2 203 556-774 68-279 (370)
418 PHA03098 kelch-like protein; P 94.6 2 4.4E-05 49.1 19.1 185 516-714 295-515 (534)
419 PF12894 Apc4_WD40: Anaphase-p 94.5 0.1 2.3E-06 36.9 5.2 33 680-713 11-43 (47)
420 PF12234 Rav1p_C: RAVE protein 94.5 1.2 2.6E-05 50.5 16.1 117 547-666 31-156 (631)
421 TIGR03118 PEPCTERM_chp_1 conse 94.4 6.6 0.00014 39.9 22.2 69 548-616 25-118 (336)
422 TIGR02604 Piru_Ver_Nterm putat 94.4 1.3 2.9E-05 47.7 15.9 150 587-755 14-205 (367)
423 KOG2444 WD40 repeat protein [G 94.3 0.15 3.2E-06 49.0 7.1 102 516-617 70-178 (238)
424 PF15390 DUF4613: Domain of un 94.2 0.62 1.3E-05 50.9 12.3 145 506-666 19-186 (671)
425 PF10168 Nup88: Nuclear pore c 94.0 1.3 2.9E-05 51.5 15.8 90 680-773 84-189 (717)
426 KOG2280 Vacuolar assembly/sort 93.9 3.8 8.3E-05 46.3 17.9 230 508-777 85-328 (829)
427 PF10168 Nup88: Nuclear pore c 93.8 17 0.00036 42.8 24.0 71 546-617 85-180 (717)
428 PRK13684 Ycf48-like protein; P 93.6 11 0.00025 39.9 22.3 155 545-708 172-329 (334)
429 PHA03098 kelch-like protein; P 93.6 3.4 7.5E-05 47.2 18.3 182 567-773 312-519 (534)
430 PF15390 DUF4613: Domain of un 93.5 1.8 4E-05 47.5 14.2 154 546-712 20-188 (671)
431 PF14727 PHTB1_N: PTHB1 N-term 93.3 4.4 9.6E-05 43.9 17.2 149 598-763 37-204 (418)
432 PHA02790 Kelch-like protein; P 93.0 6.9 0.00015 43.9 19.1 184 516-713 272-473 (480)
433 COG5276 Uncharacterized conser 92.9 11 0.00025 37.9 26.1 153 505-669 85-244 (370)
434 KOG3630 Nuclear pore complex, 92.6 1.8 3.9E-05 51.0 13.4 141 547-697 102-260 (1405)
435 PF13449 Phytase-like: Esteras 92.6 11 0.00024 39.9 18.9 173 587-763 20-249 (326)
436 TIGR03606 non_repeat_PQQ dehyd 92.2 18 0.00039 39.8 20.0 113 586-701 29-166 (454)
437 TIGR02604 Piru_Ver_Nterm putat 91.8 6.2 0.00014 42.6 16.3 148 547-699 15-202 (367)
438 COG3823 Glutamine cyclotransfe 91.8 8.3 0.00018 36.8 14.4 181 556-751 55-247 (262)
439 PRK10115 protease 2; Provision 91.5 35 0.00076 40.2 25.0 193 547-763 128-344 (686)
440 PHA02790 Kelch-like protein; P 91.2 8.6 0.00019 43.2 17.1 188 556-770 271-475 (480)
441 PF07995 GSDH: Glucose / Sorbo 91.0 24 0.00051 37.4 27.7 235 508-758 3-330 (331)
442 PF05935 Arylsulfotrans: Aryls 91.0 29 0.00063 38.9 20.9 153 558-721 117-312 (477)
443 PLN00033 photosystem II stabil 90.8 27 0.00059 37.9 20.0 150 549-707 242-396 (398)
444 COG1520 FOG: WD40-like repeat 90.7 28 0.0006 37.6 25.9 198 516-720 68-278 (370)
445 KOG3630 Nuclear pore complex, 90.5 3.7 8.1E-05 48.5 13.1 153 587-751 101-261 (1405)
446 PF02333 Phytase: Phytase; In 90.3 28 0.00061 37.2 23.4 199 550-765 58-292 (381)
447 KOG2377 Uncharacterized conser 90.3 3.8 8.2E-05 43.5 11.8 146 408-576 37-187 (657)
448 KOG1900 Nuclear pore complex, 90.2 9 0.0002 46.4 16.2 144 562-711 95-273 (1311)
449 PF07569 Hira: TUP1-like enhan 89.9 1.6 3.5E-05 43.0 8.7 75 594-668 18-97 (219)
450 PF13449 Phytase-like: Esteras 89.8 30 0.00064 36.6 22.5 152 545-697 19-231 (326)
451 PF03022 MRJP: Major royal jel 89.5 28 0.00061 36.0 18.8 168 526-698 35-253 (287)
452 PLN00033 photosystem II stabil 89.2 37 0.00079 36.9 33.5 151 589-760 241-396 (398)
453 PF14761 HPS3_N: Hermansky-Pud 89.2 22 0.00048 34.4 16.7 117 550-668 22-165 (215)
454 KOG4460 Nuclear pore complex, 89.1 9.6 0.00021 41.4 13.8 48 733-780 166-216 (741)
455 COG3292 Predicted periplasmic 88.9 32 0.0007 38.1 17.8 271 441-758 164-442 (671)
456 PF08728 CRT10: CRT10; InterP 88.9 15 0.00033 42.4 16.3 114 639-762 102-245 (717)
457 PF07995 GSDH: Glucose / Sorbo 88.8 7.7 0.00017 41.1 13.5 111 639-756 3-136 (331)
458 PF10313 DUF2415: Uncharacteri 88.7 1.7 3.6E-05 30.0 5.3 30 639-668 2-35 (43)
459 KOG2280 Vacuolar assembly/sort 88.6 20 0.00044 40.9 16.5 51 565-617 63-113 (829)
460 PF05935 Arylsulfotrans: Aryls 88.6 21 0.00045 40.0 17.3 130 643-775 153-313 (477)
461 PF14781 BBS2_N: Ciliary BBSom 88.1 18 0.0004 32.1 13.5 107 551-669 4-128 (136)
462 TIGR03118 PEPCTERM_chp_1 conse 87.7 35 0.00077 34.9 23.3 226 443-690 24-307 (336)
463 KOG2247 WD40 repeat-containing 87.7 0.075 1.6E-06 56.3 -2.5 145 589-759 37-184 (615)
464 KOG1916 Nuclear protein, conta 87.1 0.62 1.3E-05 53.2 4.0 179 524-715 110-328 (1283)
465 KOG3616 Selective LIM binding 87.1 10 0.00022 42.7 13.0 73 679-767 336-409 (1636)
466 PF11725 AvrE: Pathogenicity f 87.1 78 0.0017 40.0 21.2 157 603-773 618-791 (1774)
467 COG5167 VID27 Protein involved 86.9 11 0.00024 40.8 12.6 131 524-666 489-632 (776)
468 PF10214 Rrn6: RNA polymerase 86.8 79 0.0017 37.9 28.4 167 543-712 77-278 (765)
469 COG5290 IkappaB kinase complex 86.7 38 0.00081 39.0 17.0 134 640-786 249-389 (1243)
470 PF08728 CRT10: CRT10; InterP 86.3 22 0.00048 41.1 15.7 143 516-665 49-245 (717)
471 PF07569 Hira: TUP1-like enhan 85.9 4.1 8.8E-05 40.2 8.7 74 688-765 18-97 (219)
472 PF10395 Utp8: Utp8 family; I 85.1 79 0.0017 36.4 23.2 163 586-763 129-305 (670)
473 PF10313 DUF2415: Uncharacteri 84.7 4.2 9.1E-05 28.0 5.6 32 681-712 1-35 (43)
474 PF14655 RAB3GAP2_N: Rab3 GTPa 84.7 11 0.00024 40.9 11.8 81 541-621 303-403 (415)
475 PF14761 HPS3_N: Hermansky-Pud 84.6 41 0.00088 32.6 15.6 151 599-763 29-214 (215)
476 PF14559 TPR_19: Tetratricopep 82.7 2.7 5.8E-05 32.3 4.8 53 52-112 1-54 (68)
477 TIGR03606 non_repeat_PQQ dehyd 82.1 29 0.00063 38.2 13.9 110 639-755 31-167 (454)
478 PF12657 TFIIIC_delta: Transcr 81.8 12 0.00025 35.4 9.7 37 735-771 88-130 (173)
479 smart00667 LisH Lissencephaly 81.7 0.98 2.1E-05 29.1 1.7 30 195-224 3-32 (34)
480 PF08513 LisH: LisH; InterPro 81.7 1 2.2E-05 27.7 1.5 26 197-222 2-27 (27)
481 KOG1916 Nuclear protein, conta 81.6 1.6 3.5E-05 50.0 4.2 197 504-711 130-375 (1283)
482 TIGR03032 conserved hypothetic 81.4 70 0.0015 33.1 21.6 107 570-692 189-316 (335)
483 COG5276 Uncharacterized conser 80.8 69 0.0015 32.6 26.4 270 385-709 90-368 (370)
484 KOG1896 mRNA cleavage and poly 80.8 94 0.002 37.9 17.8 152 454-617 1047-1214(1366)
485 TIGR02276 beta_rpt_yvtn 40-res 80.5 6.3 0.00014 26.7 5.6 30 647-676 1-32 (42)
486 COG5290 IkappaB kinase complex 79.2 42 0.00091 38.6 13.8 133 550-692 206-348 (1243)
487 KOG2247 WD40 repeat-containing 79.1 0.28 6E-06 52.2 -2.5 144 442-612 35-184 (615)
488 COG4257 Vgb Streptogramin lyas 78.7 77 0.0017 31.9 21.8 182 510-713 65-265 (353)
489 PF14781 BBS2_N: Ciliary BBSom 78.6 48 0.001 29.5 12.8 117 593-717 5-132 (136)
490 COG5167 VID27 Protein involved 78.3 45 0.00098 36.4 13.1 142 558-710 482-632 (776)
491 COG4590 ABC-type uncharacteriz 78.3 7 0.00015 41.5 7.2 175 575-768 209-391 (733)
492 PF07250 Glyoxal_oxid_N: Glyox 76.1 39 0.00085 33.8 11.6 143 569-719 49-206 (243)
493 KOG1900 Nuclear pore complex, 74.5 2E+02 0.0043 35.7 18.4 144 518-667 92-273 (1311)
494 KOG4460 Nuclear pore complex, 73.9 1.5E+02 0.0032 32.8 21.5 72 547-618 105-200 (741)
495 PF03022 MRJP: Major royal jel 73.6 1.2E+02 0.0025 31.4 17.0 149 609-764 35-216 (287)
496 smart00564 PQQ beta-propeller 72.2 5.4 0.00012 25.4 3.2 26 746-771 7-32 (33)
497 PF12657 TFIIIC_delta: Transcr 71.9 21 0.00045 33.7 8.4 31 587-617 86-122 (173)
498 COG1770 PtrB Protease II [Amin 71.7 83 0.0018 35.9 13.7 124 639-778 130-271 (682)
499 smart00757 CRA CT11-RanBPM. pr 71.6 5.8 0.00013 33.3 4.1 79 96-185 1-85 (99)
500 PF07676 PD40: WD40-like Beta 71.2 11 0.00024 25.1 4.7 29 440-468 7-38 (39)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.6e-68 Score=518.63 Aligned_cols=496 Identities=15% Similarity=0.178 Sum_probs=401.6
Q ss_pred CCCCccccCCCchhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh---HHHHHHHHhcCCHHHHHHHhcccccccCCccc
Q 003871 1 MHGSKMCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFN---VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHS 77 (790)
Q Consensus 1 ~~~~~~~~~~~~~~e~~~li~q~l~~~g~~~s~~~l~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~ 77 (790)
++|+||+|. +.|+|||+.|+|+++||.+|+.+||.|||+.+. ++.|.++|++|+|+.++..+..+...++.+.+
T Consensus 8 ~l~~k~lik---k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~ 84 (519)
T KOG0293|consen 8 ILGSKGLIK---KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRK 84 (519)
T ss_pred hhhhhceec---cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhhhH
Confidence 479999998 999999999999999999999999999999993 99999999999999999999988555555554
Q ss_pred ceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhcccccchhhhccCCCCchhHHHHHHHHHHH
Q 003871 78 KKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKL 157 (790)
Q Consensus 78 ~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 157 (790)
. ++|++.||+|||++..|....|+.+||++..++ .++.+++|+|+.-|..++................|.+|+++|++
T Consensus 85 e-a~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elsk 162 (519)
T KOG0293|consen 85 E-AMFLVNKQIFLEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSK 162 (519)
T ss_pred H-HHHHHHHHHHHHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHh
Confidence 4 999999999999999999999999999999999 55999999998888776643322222212245679999999999
Q ss_pred hhcccccccccccCCCCcchHHHHHHHHhccc----ccccccchhhhHhhhhhcccchhHHHHhhhhcccccccccchhh
Q 003871 158 LVKENRILQDKLIFPCVNNSALSSLIKLICPS----FEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFRE 233 (790)
Q Consensus 158 ~i~~~~~~~~~~~~~~~p~~rL~~L~~~~~~~----c~~~~~~~~~~~~~q~l~~~~~~~~~~~l~~e~~~~~~~~~~~~ 233 (790)
+|||++| +|++||++||+|+..+ |.||+. |+
T Consensus 163 yi~p~il---------lP~rRLehLl~qAv~~Q~d~cvyhns----------ld-------------------------- 197 (519)
T KOG0293|consen 163 YIPPNIL---------LPKRRLEHLLEQAVKYQRDSCVYHNS----------LD-------------------------- 197 (519)
T ss_pred hCCHhhc---------CChHHHHHHHHHHHHHHHhHhHHhcc----------cc--------------------------
Confidence 9999999 9999999999996654 433320 00
Q ss_pred hhhccccccccccccCcceeccccccccccccccceeeeeeecCCCcccccccccchhhhhchhhhhcCccccccccCcc
Q 003871 234 YITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPS 313 (790)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~l~s~~~d~v~l~~~~~~~~~~~~~la~~i~iwd 313 (790)
T Consensus 198 -------------------------------------------------------------------------------- 197 (519)
T KOG0293|consen 198 -------------------------------------------------------------------------------- 197 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhhhccCCCccccccccCCCCCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 314 MDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 393 (790)
Q Consensus 314 ~~~~~~~~~l~~h~~~v~v~~i~fspd~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~ 393 (790)
+ +..+..|... +.++- +. . + +++..|+++| |.+.||
T Consensus 198 --s---vsll~Dh~c~-------------~~qip-------~q-t-~-------qil~~htdEV-------Wfl~FS--- 233 (519)
T KOG0293|consen 198 --S---VSLLSDHFCG-------------RLQIP-------SQ-T-W-------QILQDHTDEV-------WFLQFS--- 233 (519)
T ss_pred --h---hhhhhhcccC-------------cccCC-------ch-h-h-------hhHhhCCCcE-------EEEEEc---
Confidence 0 1111112111 11221 11 1 1 6778899999 999999
Q ss_pred CCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 003871 394 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 473 (790)
Q Consensus 394 ~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~ 473 (790)
++|++| |||+.|.+..||++....+.+..+++ .+|..+|..+.||||.++|++|+.|..+.+||+.++
T Consensus 234 ----~nGkyL----AsaSkD~Taiiw~v~~d~~~kl~~tl----vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 234 ----HNGKYL----ASASKDSTAIIWIVVYDVHFKLKKTL----VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred ----CCCeeE----eeccCCceEEEEEEecCcceeeeeee----ecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence 999999 99999999999999753222222332 379999999999999999999999887777766543
Q ss_pred CccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEc-CCCCCeEEEE
Q 003871 474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFA-NPPPIATYFI 552 (790)
Q Consensus 474 ~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~-~~~~~v~~l~ 552 (790)
.+...+. ++...+.+++
T Consensus 302 --------------------------------------------------------------d~~~~y~~~~~~S~~sc~ 319 (519)
T KOG0293|consen 302 --------------------------------------------------------------DLRHLYPSGLGFSVSSCA 319 (519)
T ss_pred --------------------------------------------------------------hhhhhcccCcCCCcceeE
Confidence 3333332 2356788999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeec
Q 003871 553 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630 (790)
Q Consensus 553 ~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h-~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~ 630 (790)
|.||| .+++|+.|+++..||++ |.....+++- ...|.+++.++||+++++.+.|..|++++.++.... . +.
T Consensus 320 W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr-----~-li 392 (519)
T KOG0293|consen 320 WCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR-----G-LI 392 (519)
T ss_pred EccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh-----c-cc
Confidence 99999 99999999999999987 6666677663 356999999999999999999999999999873211 1 11
Q ss_pred cCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEE
Q 003871 631 TGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 631 ~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~dg~i~vwd 708 (790)
..+ .+|+++.+|.+|+++++. .+..+++||++..+.++.+.++.....+..-||.- +..++++||+|+.|+||+
T Consensus 393 se~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 393 SEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred ccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEE
Confidence 222 489999999999999996 89999999999999999998876677888889984 558999999999999999
Q ss_pred CCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 709 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
..+|+++.++. || ...|+ +|+|+|.+..++|+||+||+||||.+...
T Consensus 469 r~sgkll~~Ls-------GH-s~~vN--cVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 469 RISGKLLAVLS-------GH-SKTVN--CVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ccCCceeEeec-------CC-cceee--EEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99999999987 77 44677 99999999999999999999999988643
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.3e-58 Score=437.83 Aligned_cols=487 Identities=19% Similarity=0.233 Sum_probs=368.2
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhh
Q 003871 13 YTHLITLIMKFLEEENFKESLQALEQESKIFFN----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHK 88 (790)
Q Consensus 13 ~~e~~~li~q~l~~~g~~~s~~~l~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~ 88 (790)
..++||||+|||+|..++.++++||+|++++|| ++.|-+.|-+|+||.+++.+++| .+|++++ ..||+|.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~kkL-----~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDKKL-----IDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchhHH-----HHHHHHH
Confidence 568999999999999999999999999999996 99999999999999999999999 5555543 5899999
Q ss_pred HHHHHhcCChHHHHHHHHhcccc---ccccChhHHHHHHHHhcccccchhhhccCCCCchhHHHHHHHHHHHhhcccccc
Q 003871 89 YCEALCRHERTEADSIFRKDLKV---FSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRIL 165 (790)
Q Consensus 89 ~lEll~~~~~~~al~~l~~~l~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~ 165 (790)
.|||+|.++...|..+|| +..| ++..+++||-+|+.||..+.|+..+.... ..+++.|..+++.|..++..
T Consensus 81 vlEliELREL~tAR~~lR-QTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V---- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLR-QTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV---- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHh-ccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE----
Confidence 999999999999999999 5444 56679999999999999999976554433 34788999999999999888
Q ss_pred cccccCCCCcchHHHHHHHHhcccccccccchhhhHhhhhhcccchhHHHHhhhhcccccccccchhhhhhccccccccc
Q 003871 166 QDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEK 245 (790)
Q Consensus 166 ~~~~~~~~~p~~rL~~L~~~~~~~c~~~~~~~~~~~~~q~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~ 245 (790)
+||+||+.||.| +|+ ||.|+..|..-+.+
T Consensus 155 --------VppSRLlaLlGQ-------------------aLK---WQqHQGLLPPGt~i--------------------- 183 (508)
T KOG0275|consen 155 --------VPPSRLLALLGQ-------------------ALK---WQQHQGLLPPGTTI--------------------- 183 (508)
T ss_pred --------cChHHHHHHHHH-------------------Hhh---hHhhcCCCCCCcee---------------------
Confidence 999999999665 444 78777665100000
Q ss_pred cccCcceeccccccccccccccceeeeeeecCCCcccccccccchhhhhchhhhhcCccccccccCccccchhhhhhhhc
Q 003871 246 YLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQ 325 (790)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~l~s~~~d~v~l~~~~~~~~~~~~~la~~i~iwd~~~~~~~~~l~~ 325 (790)
|+-.|+....-..
T Consensus 184 -------------------------------------------------------------------DLFRGkAA~K~~~ 196 (508)
T KOG0275|consen 184 -------------------------------------------------------------------DLFRGKAAMKDQE 196 (508)
T ss_pred -------------------------------------------------------------------eeccchhhhhhhH
Confidence 0000000000000
Q ss_pred cCCCccccccccCCCCCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 003871 326 IMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDAD 405 (790)
Q Consensus 326 h~~~v~v~~i~fspd~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~ 405 (790)
....++ . .-++|+ - |....+ .|..|| |||+++
T Consensus 197 Ee~~Pt--~-------l~r~IK-------F----------------g~KSh~-------EcA~FS-------PDgqyL-- 228 (508)
T KOG0275|consen 197 EERYPT--Q-------LARSIK-------F----------------GQKSHV-------ECARFS-------PDGQYL-- 228 (508)
T ss_pred hhhchH--H-------hhhhee-------c----------------ccccch-------hheeeC-------CCCceE--
Confidence 000000 0 011222 1 122223 455666 666666
Q ss_pred cceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccc
Q 003871 406 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNME 485 (790)
Q Consensus 406 ~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~ 485 (790)
++|+.||.|.+|+... +.+++ .+ .
T Consensus 229 --vsgSvDGFiEVWny~~----GKlrK-DL------------k------------------------------------- 252 (508)
T KOG0275|consen 229 --VSGSVDGFIEVWNYTT----GKLRK-DL------------K------------------------------------- 252 (508)
T ss_pred --eeccccceeeeehhcc----chhhh-hh------------h-------------------------------------
Confidence 6666666666666642 22211 00 0
Q ss_pred cccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEc-CCCCCeEEEEEcCCC-eEE
Q 003871 486 SQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFA 560 (790)
Q Consensus 486 ~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~g-~l~ 560 (790)
|+..+... -++.+|.|+.|+ ...+++|+ ||.|++|.+.+|.|++.|. .|..+|+|+.|+.|+ .+.
T Consensus 253 ---YQAqd~fM-------Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL 322 (508)
T KOG0275|consen 253 ---YQAQDNFM-------MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL 322 (508)
T ss_pred ---hhhhccee-------ecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhh
Confidence 11111111 156677777777 56677777 7778888888899999997 899999999999999 999
Q ss_pred EEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCe
Q 003871 561 FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 640 (790)
Q Consensus 561 sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v 640 (790)
+++.|.++++.-+.+|++++.++||+..|+...|++||.++++++.||+|++|+.++++... ++..... ..+|
T Consensus 323 S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~-----Tfk~~~~--d~~v 395 (508)
T KOG0275|consen 323 SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLS-----TFKPLGT--DYPV 395 (508)
T ss_pred cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhh-----hccCCCC--cccc
Confidence 99999999999999999999999999999999999999999999999999999999965432 2222111 1578
Q ss_pred EEEEEeCCC-CEEEEE-eCCcEEEEECCCCceeeeecCCCC-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003871 641 NHIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKM-DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 717 (790)
Q Consensus 641 ~~i~~sp~~-~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~ 717 (790)
.++..-|.+ ..++++ ..++|+|.++. |+.++++..+.. .+...+.+.||.|.++++.++|+.++.|...+|++...
T Consensus 396 nsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t 474 (508)
T KOG0275|consen 396 NSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT 474 (508)
T ss_pred eeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee
Confidence 888887754 455555 78899999995 888998876432 56788889999999999999999999999999999888
Q ss_pred eccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEec
Q 003871 718 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 718 ~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
+..| ... ++.++.|| ..+.+|+-++||.+++|.+
T Consensus 475 l~Vh-------Ekd---vIGl~HHP-HqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 475 LPVH-------EKD---VIGLTHHP-HQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred eecc-------ccc---ccccccCc-ccchhhhhcccchhhhcCC
Confidence 8743 233 55899999 8999999999999999974
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-50 Score=392.74 Aligned_cols=326 Identities=21% Similarity=0.253 Sum_probs=287.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
..+.||.+.| -|++|+ |||+.| |||+.|.++|+||+.. .....+. .+|...|.|+
T Consensus 109 sS~~GH~e~V-------l~~~fs-------p~g~~l----~tGsGD~TvR~WD~~T---eTp~~t~----KgH~~WVlcv 163 (480)
T KOG0271|consen 109 SSIAGHGEAV-------LSVQFS-------PTGSRL----VTGSGDTTVRLWDLDT---ETPLFTC----KGHKNWVLCV 163 (480)
T ss_pred cccCCCCCcE-------EEEEec-------CCCceE----EecCCCceEEeeccCC---CCcceee----cCCccEEEEE
Confidence 6788999999 899999 999999 9999999999999974 1222332 3799999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-------CcEEE
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLF 520 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-------~~~l~ 520 (790)
+|+|||+.||+|+.||+|++||..++.+ .-. ...+|...|++++|. .++++
T Consensus 164 awsPDgk~iASG~~dg~I~lwdpktg~~--------------------~g~--~l~gH~K~It~Lawep~hl~p~~r~la 221 (480)
T KOG0271|consen 164 AWSPDGKKIASGSKDGSIRLWDPKTGQQ--------------------IGR--ALRGHKKWITALAWEPLHLVPPCRRLA 221 (480)
T ss_pred EECCCcchhhccccCCeEEEecCCCCCc--------------------ccc--cccCcccceeEEeecccccCCCcccee
Confidence 9999999999999999999998776554 111 123799999999998 56899
Q ss_pred Eec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEe----
Q 003871 521 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS---- 595 (790)
Q Consensus 521 s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~s---- 595 (790)
+++ ||.|+|||+..++++..+.+|+.+|+|+.|..+|++++|+.|++|++|+...|.+.+.++||...|+.++.+
T Consensus 222 s~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~ 301 (480)
T KOG0271|consen 222 SSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV 301 (480)
T ss_pred cccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh
Confidence 999 999999999999999999999999999999888899999999999999999999999999999999999877
Q ss_pred -------CCCC-------------------------EEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEE
Q 003871 596 -------LSLN-------------------------VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 643 (790)
Q Consensus 596 -------pdg~-------------------------~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i 643 (790)
|.++ .+++|++|.++.+|+....+ +++. -..+|. .-|+.+
T Consensus 302 LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k----kpi~-rmtgHq---~lVn~V 373 (480)
T KOG0271|consen 302 LRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK----KPIT-RMTGHQ---ALVNHV 373 (480)
T ss_pred hhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc----cchh-hhhchh---hheeeE
Confidence 2233 59999999999999976522 4554 345666 699999
Q ss_pred EEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecccc
Q 003871 644 QFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA 722 (790)
Q Consensus 644 ~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~ 722 (790)
.||||++++|+ +-|..|++||-++|+.+.+|.+ |-..|+.++|+.|.++|++|+.|.++++||+++.++...+.
T Consensus 374 ~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG--Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp--- 448 (480)
T KOG0271|consen 374 SFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG--HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP--- 448 (480)
T ss_pred EECCCccEEEEeecccceeeeeCCCcchhhhhhh--ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC---
Confidence 99999999999 5899999999999999999975 79999999999999999999999999999999999887765
Q ss_pred ccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEe
Q 003871 723 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 761 (790)
Q Consensus 723 ~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~ 761 (790)
|| .+.|+ ++.|+| ||..+++|+.|..+++|.
T Consensus 449 ----Gh-~DEVf--~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 449 ----GH-ADEVF--AVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ----CC-CceEE--EEEecC-CCceeecCCCceEEEeec
Confidence 76 66788 999999 999999999999999995
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-46 Score=366.12 Aligned_cols=321 Identities=14% Similarity=0.156 Sum_probs=282.4
Q ss_pred hhhhhhhccCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (790)
Q Consensus 318 ~~~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs 390 (790)
++-..+.+|...|. |++|+|+ +.|.+++ +||..+.... .+.+||...| .|++|+
T Consensus 106 rCssS~~GH~e~Vl--~~~fsp~g~~l~tGsGD~TvR--~WD~~TeTp~--------~t~KgH~~WV-------lcvaws 166 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVL--SVQFSPTGSRLVTGSGDTTVR--LWDLDTETPL--------FTCKGHKNWV-------LCVAWS 166 (480)
T ss_pred eeccccCCCCCcEE--EEEecCCCceEEecCCCceEE--eeccCCCCcc--------eeecCCccEE-------EEEEEC
Confidence 45667899999987 9999998 8899999 9999998887 9999999999 999999
Q ss_pred CCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcC-----CCCEEEEEeCCCcE
Q 003871 391 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-----SGDFLVALTQTATH 465 (790)
Q Consensus 391 ~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~sp-----dg~~l~s~~~dg~i 465 (790)
|||+.+ |+|+.||+|++||... +...--.+ .+|...|++++|.| ..++|++++.||.+
T Consensus 167 -------PDgk~i----ASG~~dg~I~lwdpkt----g~~~g~~l--~gH~K~It~Lawep~hl~p~~r~las~skDg~v 229 (480)
T KOG0271|consen 167 -------PDGKKI----ASGSKDGSIRLWDPKT----GQQIGRAL--RGHKKWITALAWEPLHLVPPCRRLASSSKDGSV 229 (480)
T ss_pred -------CCcchh----hccccCCeEEEecCCC----CCcccccc--cCcccceeEEeecccccCCCccceecccCCCCE
Confidence 999999 9999999999999874 44333233 47999999999976 67789999999999
Q ss_pred EEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEec-CCeEEEEECCCCcEEEEEcC
Q 003871 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFAN 543 (790)
Q Consensus 466 ~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~~ 543 (790)
+|||+..+.. +.. ..+|+.+|+|+.|- ..++++|+ |++|++|+...|++.+.+++
T Consensus 230 rIWd~~~~~~---------------------~~~--lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkG 286 (480)
T KOG0271|consen 230 RIWDTKLGTC---------------------VRT--LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKG 286 (480)
T ss_pred EEEEccCceE---------------------EEE--eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcc
Confidence 9999775433 221 23899999999999 88999999 99999999999999999999
Q ss_pred CCCCeEEEEEc-----------CCC--------------------------eEEEEeCCCcEEEEeCCCC-ceEEEEcCC
Q 003871 544 PPPIATYFILL-----------PQD--------------------------LFAFGFDDSSILVHCPCTK-KTKAKLKGH 585 (790)
Q Consensus 544 ~~~~v~~l~~s-----------~~g--------------------------~l~sgs~dg~I~iwd~~~~-~~~~~l~~h 585 (790)
|...|+.++.+ |.+ .+++|++|.++.+|+.... +++..+.+|
T Consensus 287 HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH 366 (480)
T KOG0271|consen 287 HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH 366 (480)
T ss_pred cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch
Confidence 99999998877 222 4999999999999997654 578889999
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEE
Q 003871 586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 664 (790)
Q Consensus 586 ~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd 664 (790)
..-|+.+.||||++++|++|.|..|++||.++|+.+ . ...+|- +.|..++|+.|+++|++| .|.++++||
T Consensus 367 q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l-----a-sfRGHv---~~VYqvawsaDsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 367 QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL-----A-SFRGHV---AAVYQVAWSADSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred hhheeeEEECCCccEEEEeecccceeeeeCCCcchh-----h-hhhhcc---ceeEEEEeccCccEEEEcCCCceEEEEE
Confidence 999999999999999999999999999999997643 3 445676 799999999999999995 899999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 665 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 665 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
+++.+....+.+ |...|.++.|+|||..+++|+.|..+++|.
T Consensus 438 V~tkKl~~DLpG--h~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 438 VRTKKLKQDLPG--HADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeeeeecccCCC--CCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999988888854 799999999999999999999999999994
No 5
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-42 Score=361.27 Aligned_cols=396 Identities=14% Similarity=0.178 Sum_probs=328.7
Q ss_pred ccccCccccchhhhhhhhccCCCccccccccCCC---------CCCCcceeeeccCCCccc-ccccccCCCCCCCCCCCC
Q 003871 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSNLR-YASSILTDKPNQEGRPLD 376 (790)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd---------~~d~~i~l~iwd~~~g~~-~~~~~~~~~~~l~~h~~~ 376 (790)
+.+++||+..+.+.+.|++|.+.|. ++.|.|+ ..|++++ +||..++.. + .++..|.+.
T Consensus 127 ~~v~VWdi~~~~~th~fkG~gGvVs--sl~F~~~~~~~lL~sg~~D~~v~--vwnl~~~~tcl--------~~~~~H~S~ 194 (775)
T KOG0319|consen 127 GRVKVWDIKNGYCTHSFKGHGGVVS--SLLFHPHWNRWLLASGATDGTVR--VWNLNDKRTCL--------HTMILHKSA 194 (775)
T ss_pred ceEEEEEeeCCEEEEEecCCCceEE--EEEeCCccchhheeecCCCceEE--EEEcccCchHH--------HHHHhhhhh
Confidence 9999999999999999999999988 9999999 7899999 999986654 5 888999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCC----
Q 003871 377 ASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS---- 452 (790)
Q Consensus 377 v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spd---- 452 (790)
| ++++|+ +|+..+ +++++|..+.|||+.. ......+++ ...+-++.+-++
T Consensus 195 v-------tsL~~~-------~d~~~~----ls~~RDkvi~vwd~~~---~~~l~~lp~-----ye~~E~vv~l~~~~~~ 248 (775)
T KOG0319|consen 195 V-------TSLAFS-------EDSLEL----LSVGRDKVIIVWDLVQ---YKKLKTLPL-----YESLESVVRLREELGG 248 (775)
T ss_pred e-------eeeeec-------cCCceE----EEeccCcEEEEeehhh---hhhhheech-----hhheeeEEEechhcCC
Confidence 9 999999 999999 9999999999999963 333333332 456777777777
Q ss_pred -CCEEEEEeCCCcEEEEecCCCCc------ccccccccc-----------------------------------------
Q 003871 453 -GDFLVALTQTATHKLWKWQSNKQ------SLEEENVNM----------------------------------------- 484 (790)
Q Consensus 453 -g~~l~s~~~dg~i~vw~~~~~~~------~~g~~~~~~----------------------------------------- 484 (790)
|.+++++|.+|.+++||..+... +.+......
T Consensus 249 ~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~D 328 (775)
T KOG0319|consen 249 KGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILD 328 (775)
T ss_pred cceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhee
Confidence 77999999999999999987765 111100000
Q ss_pred ------------------ccccccCCCceeeeecccCCCCCCeEEEE-ec-CcEEEEec-CCeEEEEECCCC----cEEE
Q 003871 485 ------------------ESQLYQPSSKLVMTNDIAADPKDSISCFA-LR-GSHLFSAS-GGKISIFSLETF----QTLA 539 (790)
Q Consensus 485 ------------------~~~i~~~~~~~~~~~~~~~~~~~~V~~l~-~s-~~~l~s~s-dg~I~vwd~~~~----~~~~ 539 (790)
..++|+..+..+. +..+|+..|.++. |+ |-+|++|+ |.++++|.++++ .++.
T Consensus 329 m~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a 405 (775)
T KOG0319|consen 329 MKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA 405 (775)
T ss_pred eeecCCccceEEEEeCCCceEEEecCCCceE---EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence 0055555444433 2348999999999 55 77999999 999999988543 3455
Q ss_pred EEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce-----EE----EEcCCCCCEEEEEEeCCCCEEEEEeCCC
Q 003871 540 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-----KA----KLKGHQNRITCLAYSLSLNVLVSSGADA 608 (790)
Q Consensus 540 ~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~-----~~----~l~~h~~~v~~l~~spdg~~l~s~s~dg 608 (790)
...+|...|.+++++..+ .++++|.|+++++|++...+. .. ....|...|++++++|+.+.+|+||.|+
T Consensus 406 ~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDk 485 (775)
T KOG0319|consen 406 QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDK 485 (775)
T ss_pred hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccc
Confidence 667999999999998888 999999999999999976221 11 2245999999999999999999999999
Q ss_pred cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEE
Q 003871 609 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT 687 (790)
Q Consensus 609 ~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~ 687 (790)
+.++|+++.. ..+. ...||. ..|.++.|+|..+.+++ +.|.+|+||.+.+..+++++.+ |...|..+.
T Consensus 486 taKiW~le~~-----~l~~-vLsGH~---RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG--H~~aVlra~ 554 (775)
T KOG0319|consen 486 TAKIWDLEQL-----RLLG-VLSGHT---RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG--HTSAVLRAS 554 (775)
T ss_pred ceeeecccCc-----eEEE-EeeCCc---cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC--ccceeEeee
Confidence 9999999963 2333 666888 69999999999999999 5999999999999999999975 799999999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 688 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 688 ~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
|-.+|+.|++++.||-+++|+++++++.+.+. +| .+.|+ +++-+| ...+++||+.||.|.+|.=.+.
T Consensus 555 F~~~~~qliS~~adGliKlWnikt~eC~~tlD-------~H-~DrvW--aL~~~~-~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 555 FIRNGKQLISAGADGLIKLWNIKTNECEMTLD-------AH-NDRVW--ALSVSP-LLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred eeeCCcEEEeccCCCcEEEEeccchhhhhhhh-------hc-cceeE--EEeecC-ccceeEecCCCeEEEEeecCcH
Confidence 99999999999999999999999999999987 44 66899 899999 7889999999999999975443
No 6
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-40 Score=348.70 Aligned_cols=410 Identities=14% Similarity=0.121 Sum_probs=331.0
Q ss_pred ccccCccccchhhhhhhhc-cCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCC
Q 003871 307 DKLKFPSMDKSRLLSLIKQ-IMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS 378 (790)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~-h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~ 378 (790)
..+++|++++++++..++. |++++. .++|+|. +.|+.++ +||+..+.++ +.|+||++.|
T Consensus 84 ~llrv~~L~tgk~irswKa~He~Pvi--~ma~~~~g~LlAtggaD~~v~--VWdi~~~~~t--------h~fkG~gGvV- 150 (775)
T KOG0319|consen 84 QLLRVWSLPTGKLIRSWKAIHEAPVI--TMAFDPTGTLLATGGADGRVK--VWDIKNGYCT--------HSFKGHGGVV- 150 (775)
T ss_pred ceEEEEEcccchHhHhHhhccCCCeE--EEEEcCCCceEEeccccceEE--EEEeeCCEEE--------EEecCCCceE-
Confidence 7889999999999999998 999877 9999998 8999999 9999999998 9999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEE
Q 003871 379 SGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA 458 (790)
Q Consensus 379 ~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s 458 (790)
+++.|. |+ +.-..| ++|..|+++++||+.. ...|..+- ..|.+.|++++|++|+.-+++
T Consensus 151 ------ssl~F~-~~----~~~~lL----~sg~~D~~v~vwnl~~---~~tcl~~~---~~H~S~vtsL~~~~d~~~~ls 209 (775)
T KOG0319|consen 151 ------SSLLFH-PH----WNRWLL----ASGATDGTVRVWNLND---KRTCLHTM---ILHKSAVTSLAFSEDSLELLS 209 (775)
T ss_pred ------EEEEeC-Cc----cchhhe----eecCCCceEEEEEccc---CchHHHHH---HhhhhheeeeeeccCCceEEE
Confidence 999997 33 333446 9999999999999974 22232211 269999999999999999999
Q ss_pred EeCCCcEEEEecCCCCc----c------------c---cc--cc----cccccccccCCCceeeeecc------------
Q 003871 459 LTQTATHKLWKWQSNKQ----S------------L---EE--EN----VNMESQLYQPSSKLVMTNDI------------ 501 (790)
Q Consensus 459 ~~~dg~i~vw~~~~~~~----~------------~---g~--~~----~~~~~~i~~~~~~~~~~~~~------------ 501 (790)
++.|..+.+||+..-+. + . ++ .. .....++|+.+++.+.....
T Consensus 210 ~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~ 289 (775)
T KOG0319|consen 210 VGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLA 289 (775)
T ss_pred eccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhccee
Confidence 99999999999965443 0 0 00 00 01122566665554321110
Q ss_pred -----------------------------cCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCe
Q 003871 502 -----------------------------AADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 548 (790)
Q Consensus 502 -----------------------------~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v 548 (790)
.-|..+.|.+++|- .+++++++ .+.+++|+..+..+. .+.+|+..|
T Consensus 290 ~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~v 368 (775)
T KOG0319|consen 290 IESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAV 368 (775)
T ss_pred ccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhhe
Confidence 01344667788887 47888888 689999988877665 788999999
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCC----ceEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceee
Q 003871 549 TYFILLPQD-LFAFGFDDSSILVHCPCTK----KTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLC 622 (790)
Q Consensus 549 ~~l~~s~~g-~l~sgs~dg~I~iwd~~~~----~~~~~l~~h~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~ 622 (790)
.++....+| +|++|+.|.++++|.++.+ .++....+|++.|.+++++..+ .+++++|.|+++++|++...+...
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~ 448 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA 448 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence 999977888 9999999999999988544 2355667899999999997744 689999999999999998732221
Q ss_pred ceeee----eeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEE
Q 003871 623 SKFLH----SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 697 (790)
Q Consensus 623 ~~~l~----~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 697 (790)
. ++. .....|. ..|++++++|+.+++|+| .|.+.+||+++.+....++.+ |...|.++.|+|..+.++|
T Consensus 449 ~-~~~~~~~~t~~aHd---KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG--H~RGvw~V~Fs~~dq~laT 522 (775)
T KOG0319|consen 449 F-PIVLTCRYTERAHD---KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG--HTRGVWCVSFSKNDQLLAT 522 (775)
T ss_pred c-cceehhhHHHHhhc---ccccceEecCCCceEEecccccceeeecccCceEEEEeeC--CccceEEEEeccccceeEe
Confidence 1 111 1234566 699999999999999995 899999999998888889875 7999999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccc
Q 003871 698 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 698 gs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
+|.|++|+||.+.+..+.+++. ||.. . ++.+.|-. +|..|+|++.||-|++|++.++++.
T Consensus 523 ~SgD~TvKIW~is~fSClkT~e-------GH~~-a--Vlra~F~~-~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 523 CSGDKTVKIWSISTFSCLKTFE-------GHTS-A--VLRASFIR-NGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred ccCCceEEEEEeccceeeeeec-------Cccc-e--eEeeeeee-CCcEEEeccCCCcEEEEeccchhhh
Confidence 9999999999999999999998 7744 3 44899998 8999999999999999999988654
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-40 Score=329.42 Aligned_cols=279 Identities=15% Similarity=0.215 Sum_probs=251.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 515 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--- 515 (790)
|-+.+|..+.||+|++.|++|+-+|.++||+.++... ... ..+|...|.++.|+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~---------------------~~~--l~gH~~~v~~~~fhP~~ 229 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL---------------------LQT--LRGHTSRVGAAVFHPVD 229 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce---------------------eEE--EeccccceeeEEEccCC
Confidence 4578899999999999999999999999999876322 221 23899999999999
Q ss_pred -CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEE
Q 003871 516 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 592 (790)
Q Consensus 516 -~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l 592 (790)
+..+++|+ ||++++|++.+...+..+.+|...|..++|+|+| +|++++.|.+-++||+.++..+....||+..|.++
T Consensus 230 ~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~i 309 (459)
T KOG0272|consen 230 SDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSI 309 (459)
T ss_pred CccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccccee
Confidence 34799999 9999999999999999999999999999999999 99999999999999999999988889999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCcee
Q 003871 593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT 671 (790)
Q Consensus 593 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~ 671 (790)
+|+|||..+++|+.|..-+|||+++|+. +. +..+|. .+|.+++|+|+|..||+| .|++++|||++..+.+
T Consensus 310 af~~DGSL~~tGGlD~~~RvWDlRtgr~-----im-~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSLGRVWDLRTGRC-----IM-FLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL 380 (459)
T ss_pred EecCCCceeeccCccchhheeecccCcE-----EE-Eecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccc
Confidence 9999999999999999999999999763 33 455787 799999999999999995 9999999999998888
Q ss_pred eeecCCCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEE
Q 003871 672 SQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 750 (790)
Q Consensus 672 ~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las 750 (790)
.++. .|..-|+.+.|+| .|.+|+|++.|+++++|...++++++.+. ||.+ .|. ++..+| |+..++|
T Consensus 381 y~ip--AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa-------GHe~-kV~--s~Dis~-d~~~i~t 447 (459)
T KOG0272|consen 381 YTIP--AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA-------GHEG-KVI--SLDISP-DSQAIAT 447 (459)
T ss_pred eecc--cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc-------CCcc-ceE--EEEecc-CCceEEE
Confidence 7775 4899999999998 78899999999999999999999999987 7744 555 999999 8999999
Q ss_pred EeCCCcEEEEec
Q 003871 751 GLTNGRVHVIEP 762 (790)
Q Consensus 751 ~s~Dg~i~iW~~ 762 (790)
++.|.++++|.+
T Consensus 448 ~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 448 SSFDRTIKLWRP 459 (459)
T ss_pred eccCceeeeccC
Confidence 999999999963
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.3e-39 Score=305.54 Aligned_cols=290 Identities=15% Similarity=0.155 Sum_probs=255.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
++|+||.+.| .++.|+ +|++++ +++|.||.+.|||..+ +.+.+.+++ ....|..+
T Consensus 49 r~LkGH~~Ki-------~~~~ws-------~Dsr~i----vSaSqDGklIvWDs~T---tnK~haipl----~s~WVMtC 103 (343)
T KOG0286|consen 49 RTLKGHLNKI-------YAMDWS-------TDSRRI----VSASQDGKLIVWDSFT---TNKVHAIPL----PSSWVMTC 103 (343)
T ss_pred EEecccccce-------eeeEec-------CCcCeE----EeeccCCeEEEEEccc---ccceeEEec----CceeEEEE
Confidence 8899999999 999999 999999 9999999999999985 667777776 36899999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEec-CC
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GG 525 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~s-dg 525 (790)
+|+|.|+++|+|+-|+...||++.+... .+.........+|.+.+.|+.|. +..|++++ |.
T Consensus 104 A~sPSg~~VAcGGLdN~Csiy~ls~~d~-----------------~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~ 166 (343)
T KOG0286|consen 104 AYSPSGNFVACGGLDNKCSIYPLSTRDA-----------------EGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDM 166 (343)
T ss_pred EECCCCCeEEecCcCceeEEEecccccc-----------------cccceeeeeecCccceeEEEEEcCCCceEecCCCc
Confidence 9999999999999999999999885321 11111111123799999999999 88899999 99
Q ss_pred eEEEEECCCCcEEEEEcCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEE
Q 003871 526 KISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 603 (790)
Q Consensus 526 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~-~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s 603 (790)
+..+||+++|+.+..|.+|.+.|.++.++| ++ .+++|+-|+..++||++.+.+++.|.+|...|+++.|.|+|.-+++
T Consensus 167 TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 167 TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred eEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeee
Confidence 999999999999999999999999999999 66 9999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCC
Q 003871 604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLP 682 (790)
Q Consensus 604 ~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~ 682 (790)
|++|++.++||++.... +..+. |.+...+|++++||..|++|++| .|..+.+||.-.++.+..+.+ |...
T Consensus 247 GSDD~tcRlyDlRaD~~-----~a~ys--~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G--HeNR 317 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQE-----LAVYS--HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG--HENR 317 (343)
T ss_pred cCCCceeEEEeecCCcE-----Eeeec--cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec--cCCe
Confidence 99999999999998543 22111 22122689999999999999997 899999999999998888865 7999
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 683 ITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 683 v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
|.++..+|||.-+++|+.|.+++||.
T Consensus 318 vScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 318 VSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999994
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-39 Score=324.16 Aligned_cols=275 Identities=16% Similarity=0.166 Sum_probs=240.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC
Q 003871 382 DSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ 461 (790)
Q Consensus 382 ~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~ 461 (790)
+.|++++|+ .||..| |+|+.||.++||+.+ ......+ ..|.++|.++.|+.+|+||++++.
T Consensus 236 kdVT~L~Wn-------~~G~~L----atG~~~G~~riw~~~----G~l~~tl----~~HkgPI~slKWnk~G~yilS~~v 296 (524)
T KOG0273|consen 236 KDVTSLDWN-------NDGTLL----ATGSEDGEARIWNKD----GNLISTL----GQHKGPIFSLKWNKKGTYILSGGV 296 (524)
T ss_pred CCcceEEec-------CCCCeE----EEeecCcEEEEEecC----chhhhhh----hccCCceEEEEEcCCCCEEEeccC
Confidence 335999999 889999 999999999999997 3444443 359999999999999999999999
Q ss_pred CCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEec-CCeEEEEECCCCcEEE
Q 003871 462 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLA 539 (790)
Q Consensus 462 dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~~~~ 539 (790)
|+++.+||..++.. ..++. -|..+-..+.|- +..+++++ |+.|+++.+....++.
T Consensus 297 D~ttilwd~~~g~~--------------------~q~f~---~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~ 353 (524)
T KOG0273|consen 297 DGTTILWDAHTGTV--------------------KQQFE---FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVK 353 (524)
T ss_pred CccEEEEeccCceE--------------------EEeee---eccCCccceEEecCceEeecCCCceEEEEEecCCCcce
Confidence 99999999766443 22222 266666778888 77788888 9999999999999999
Q ss_pred EEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCC---------CEEEEEeCCCc
Q 003871 540 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL---------NVLVSSGADAQ 609 (790)
Q Consensus 540 ~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg---------~~l~s~s~dg~ 609 (790)
++.+|.+.|.++.|.|.| +|+++|.|++++||+...+.....+.+|+..|..+.|+|+| ..+++++.|++
T Consensus 354 t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst 433 (524)
T KOG0273|consen 354 TFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST 433 (524)
T ss_pred eeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe
Confidence 999999999999999999 99999999999999999888999999999999999999975 36899999999
Q ss_pred EEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEE
Q 003871 610 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY 688 (790)
Q Consensus 610 I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~ 688 (790)
|++||+..+. ++.++. .|. .+|.+++|+|+|+++|+| .||.|.+|+.++++.++.+.. ...|..++|
T Consensus 434 V~lwdv~~gv-----~i~~f~-kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~W 501 (524)
T KOG0273|consen 434 VKLWDVESGV-----PIHTLM-KHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCW 501 (524)
T ss_pred EEEEEccCCc-----eeEeec-cCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---CCeEEEEEE
Confidence 9999999854 455333 344 699999999999999997 899999999999999999865 677999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECC
Q 003871 689 SCDGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 689 s~dg~~l~sgs~dg~i~vwd~~ 710 (790)
+.+|.+|..+-.|+.+++.|++
T Consensus 502 n~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 502 NAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999999875
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.3e-39 Score=335.72 Aligned_cols=410 Identities=14% Similarity=0.154 Sum_probs=321.4
Q ss_pred ccccCccccchhhhhhhhccCCCccccccccCCC------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCC
Q 003871 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG 380 (790)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~ 380 (790)
|...+-++.....++.+.-..+ |.|+.|||| +..+.+. ||.......-..+.|...+++.||.+.|
T Consensus 77 g~~~lvs~~~r~Vlh~f~fk~~---v~~i~fSPng~~fav~~gn~lq--iw~~P~~~~~~~~pFvl~r~~~g~fddi--- 148 (893)
T KOG0291|consen 77 GRALLVSLLSRSVLHRFNFKRG---VGAIKFSPNGKFFAVGCGNLLQ--IWHAPGEIKNEFNPFVLHRTYLGHFDDI--- 148 (893)
T ss_pred CcEEEEecccceeeEEEeecCc---cceEEECCCCcEEEEEecceeE--EEecCcchhcccCcceEeeeecCCccce---
Confidence 3333334444444444444444 559999999 7788888 8876544331235567778899999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEe
Q 003871 381 DDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT 460 (790)
Q Consensus 381 ~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~ 460 (790)
.++.|+ .|.+++ ++|+.|.++++|.++. ........+ .+|.+.|.+.-|..+...+++.+
T Consensus 149 ----~si~Ws-------~DSr~l----~~gsrD~s~rl~~v~~---~k~~~~~~l--~gHkd~VvacfF~~~~~~l~tvs 208 (893)
T KOG0291|consen 149 ----TSIDWS-------DDSRLL----VTGSRDLSARLFGVDG---NKNLFTYAL--NGHKDYVVACFFGANSLDLYTVS 208 (893)
T ss_pred ----eEEEec-------cCCceE----EeccccceEEEEEecc---ccccceEec--cCCCcceEEEEeccCcceEEEEe
Confidence 999999 999999 9999999999999985 333333333 57999999999999999999999
Q ss_pred CCCcEEEEecCCCCc------------------ccccc-----------------------cccccc-------------
Q 003871 461 QTATHKLWKWQSNKQ------------------SLEEE-----------------------NVNMES------------- 486 (790)
Q Consensus 461 ~dg~i~vw~~~~~~~------------------~~g~~-----------------------~~~~~~------------- 486 (790)
.||.+.+|....... ..+.. .+.+.+
T Consensus 209 kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~ 288 (893)
T KOG0291|consen 209 KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGE 288 (893)
T ss_pred cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCe
Confidence 999999999872211 00000 000000
Q ss_pred -ccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEecC--CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEE
Q 003871 487 -QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA 560 (790)
Q Consensus 487 -~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~sd--g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~ 560 (790)
.+|+.++-.++.... -...+|..++|+ |..|+.|+. |.+-||+..+...+.+.++|...+++++++||| ++|
T Consensus 289 f~LyelP~f~lih~LS--is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~ia 366 (893)
T KOG0291|consen 289 FGLYELPDFNLIHSLS--ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIA 366 (893)
T ss_pred eEEEecCCceEEEEee--cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEE
Confidence 233433333333222 235788999999 999999993 799999999988888889999999999999999 999
Q ss_pred EEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCe
Q 003871 561 FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 640 (790)
Q Consensus 561 sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v 640 (790)
+|+.||.|++||..+|-+..+|..|+..|+++.|+.+|+.+++++.||+|+.||+..++. .+++..... ...
T Consensus 367 TG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-----fRTft~P~p---~Qf 438 (893)
T KOG0291|consen 367 TGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-----FRTFTSPEP---IQF 438 (893)
T ss_pred eccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-----eeeecCCCc---eee
Confidence 999999999999999999999999999999999999999999999999999999988543 332322222 467
Q ss_pred EEEEEeCCCCEEEEE-eC-CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEE
Q 003871 641 NHIQFHPDQIHLLSI-HE-GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRCQ 717 (790)
Q Consensus 641 ~~i~~sp~~~~l~~~-~d-g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~-~~~~~ 717 (790)
.|++..|.|..+.+| .| -.|++|++++|+.+..+.+ |.++|.+++|+|+|..|++||.|.+|++||+-.. ..+.+
T Consensus 439 scvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG--HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt 516 (893)
T KOG0291|consen 439 SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG--HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVET 516 (893)
T ss_pred eEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC--CCCcceeeEEccccCeEEeccccceEEEEEeeccCceeee
Confidence 889999999988886 34 3599999999999999875 7999999999999999999999999999998754 23333
Q ss_pred eccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccc
Q 003871 718 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 718 ~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
+.. ... +++++|+| +|+-||+++-||.|.+||+..+.+.
T Consensus 517 l~i---------~sd--vl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 517 LEI---------RSD--VLAVSFRP-DGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred Eee---------ccc--eeEEEEcC-CCCeEEEEEecceEEEEEhhhceee
Confidence 331 113 55999999 8999999999999999999887655
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.7e-40 Score=326.52 Aligned_cols=272 Identities=19% Similarity=0.168 Sum_probs=244.2
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCC--CCEEEEEeCC
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQT 462 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spd--g~~l~s~~~d 462 (790)
..+.|| +|++.+ ||||-+|.+++|+... .....++. ||...|.++.|+|. +..+|+|+.|
T Consensus 179 s~~~fS-------~ds~~l----aT~swsG~~kvW~~~~---~~~~~~l~----gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 179 SGCSFS-------RDSKHL----ATGSWSGLVKVWSVPQ---CNLLQTLR----GHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred eeeEee-------cCCCeE----EEeecCCceeEeecCC---cceeEEEe----ccccceeeEEEccCCCccceeeeccC
Confidence 899999 999999 9999999999999974 33344433 89999999999997 6689999999
Q ss_pred CcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEE
Q 003871 463 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA 539 (790)
Q Consensus 463 g~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~ 539 (790)
|++++|++.+... + . -.++|...|..++|+ |++|++++ |.+-++||+.++..+.
T Consensus 241 gtvklw~~~~e~~--------------------l-~--~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 241 GTVKLWKLSQETP--------------------L-Q--DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred CceeeeccCCCcc--------------------h-h--hhhcchhhheeeeecCCCceeeecccccchhhcccccchhhH
Confidence 9999999886432 1 1 123799999999999 99999999 9999999999999888
Q ss_pred EEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 003871 540 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (790)
Q Consensus 540 ~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 618 (790)
..++|..+|.+++|.||| .+++|+.|..-+|||+++|.++..+.+|..+|.+|+|+|+|..||+||.|++++|||++..
T Consensus 298 ~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 298 LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred hhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence 889999999999999999 9999999999999999999999999999999999999999999999999999999999983
Q ss_pred ceeeceeeeeeccCCCCCCCCeEEEEEeC-CCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEE
Q 003871 619 KKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 696 (790)
Q Consensus 619 ~~~~~~~l~~~~~~~~~~~~~v~~i~~sp-~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 696 (790)
..+.+++ +|. .-|+.+.|+| .|.+|++ +.|++++||...+..+++++.+ |...|.++++++|+++++
T Consensus 378 -----~~ly~ip-AH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG--He~kV~s~Dis~d~~~i~ 446 (459)
T KOG0272|consen 378 -----SELYTIP-AHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG--HEGKVISLDISPDSQAIA 446 (459)
T ss_pred -----ccceecc-ccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC--CccceEEEEeccCCceEE
Confidence 3466344 565 6899999999 6778887 5999999999999999999975 799999999999999999
Q ss_pred EEEcCCeEEEEE
Q 003871 697 VSCKSGHVKVFD 708 (790)
Q Consensus 697 sgs~dg~i~vwd 708 (790)
+++.|+++++|.
T Consensus 447 t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 447 TSSFDRTIKLWR 458 (459)
T ss_pred EeccCceeeecc
Confidence 999999999995
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.5e-38 Score=319.18 Aligned_cols=423 Identities=16% Similarity=0.139 Sum_probs=321.2
Q ss_pred Ccccccccc-cchhhhhchh--h--------------hhcC----cccc--------ccccCccccchhhhhhhhccCCC
Q 003871 279 QKLPSDFAE-RAHLFDDFKV--L--------------VERN----PMLQ--------DKLKFPSMDKSRLLSLIKQIMDW 329 (790)
Q Consensus 279 ~~l~s~~~d-~v~l~~~~~~--~--------------~~~~----~~la--------~~i~iwd~~~~~~~~~l~~h~~~ 329 (790)
-++|||..- +|++|+-.++ + +.|. ++.| |.+..|| +|.....+.+|...
T Consensus 72 ~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ 149 (603)
T KOG0318|consen 72 FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRR 149 (603)
T ss_pred eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccceeecccee
Confidence 466666555 8999995442 1 1222 3344 5555555 46667778999998
Q ss_pred ccccccccCCC--------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 330 WVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSL 401 (790)
Q Consensus 330 v~v~~i~fspd--------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~ 401 (790)
+. ++.|-|. +.|++|- +|+-. .|+++.++..|..-| .|+.|+ |||.
T Consensus 150 in--s~~~KpsRPfRi~T~sdDn~v~--ffeGP--------PFKFk~s~r~HskFV-------~~VRys-------PDG~ 203 (603)
T KOG0318|consen 150 IN--SVDFKPSRPFRIATGSDDNTVA--FFEGP--------PFKFKSSFREHSKFV-------NCVRYS-------PDGS 203 (603)
T ss_pred Ee--eeeccCCCceEEEeccCCCeEE--EeeCC--------Ceeeeecccccccce-------eeEEEC-------CCCC
Confidence 88 9999998 8999998 77542 235558888999999 999999 9999
Q ss_pred CCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccc
Q 003871 402 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 481 (790)
Q Consensus 402 ~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~ 481 (790)
.+ ||++.||++.+||-.+ ...+-.+. ...+|.+.|.+++|+||++.+++++.|.+++|||+.+...
T Consensus 204 ~F----at~gsDgki~iyDGkt---ge~vg~l~-~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl------ 269 (603)
T KOG0318|consen 204 RF----ATAGSDGKIYIYDGKT---GEKVGELE-DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL------ 269 (603)
T ss_pred eE----EEecCCccEEEEcCCC---ccEEEEec-CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce------
Confidence 99 9999999999999874 22222222 2357999999999999999999999999999999887544
Q ss_pred cccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eE
Q 003871 482 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF 559 (790)
Q Consensus 482 ~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l 559 (790)
..+..+...-...-..+-|.+..|++.+ +|+|.+++...+..++.+.+|...|+++..+|++ +|
T Consensus 270 --------------v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i 335 (603)
T KOG0318|consen 270 --------------VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI 335 (603)
T ss_pred --------------EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE
Confidence 1111111111223334555566777777 9999999999999999999999999999999999 99
Q ss_pred EEEeCCCcEEEEeCCCCceEEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeec-------eee--ee-
Q 003871 560 AFGFDDSSILVHCPCTKKTKAKL-KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS-------KFL--HS- 628 (790)
Q Consensus 560 ~sgs~dg~I~iwd~~~~~~~~~l-~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~-------~~l--~~- 628 (790)
++|+.||.|.-|+..+|..-+.. ++|...|.+++.+..+ .+++++.|.++++.++..+..... ++. ..
T Consensus 336 ~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 336 YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred EeeccCceEEEEecCCccccccccccccceEEEEeecCCC-cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 99999999999999988765444 6799999999988654 577888999999998754211110 000 00
Q ss_pred ---------------eccCCC-----CCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEE
Q 003871 629 ---------------FQTGLV-----PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT 687 (790)
Q Consensus 629 ---------------~~~~~~-----~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~ 687 (790)
+...+. +......+++++|++..+++| .|+.|+||.+..+..........|..+|++++
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA 494 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE
Confidence 001010 011356789999999999995 99999999998766544434445899999999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCcc
Q 003871 688 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 767 (790)
Q Consensus 688 ~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~ 767 (790)
||||+.||++|...+.+.+||+.+.+...... +-|...|. +++|+| +..++||||-|..|.||++..+..
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w-------~FHtakI~--~~aWsP-~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREVKTNRW-------AFHTAKIN--CVAWSP-NNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCceeccee-------eeeeeeEE--EEEeCC-CceEEEeccccceEEEEEccChhh
Confidence 99999999999999999999999988743322 22355666 999999 899999999999999999988764
Q ss_pred c
Q 003871 768 E 768 (790)
Q Consensus 768 ~ 768 (790)
.
T Consensus 565 ~ 565 (603)
T KOG0318|consen 565 H 565 (603)
T ss_pred h
Confidence 4
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.8e-38 Score=328.77 Aligned_cols=332 Identities=22% Similarity=0.319 Sum_probs=264.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccceeccCC-CceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEe
Q 003871 382 DSNDSSCFNDNNQSRESTSLPDADSAVCAKSL-EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT 460 (790)
Q Consensus 382 ~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d-~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~ 460 (790)
.+|..++|+ ..|.++ |.|+.. |++-||+... .... +..+||...+.++++||||+++|+|+
T Consensus 308 ~~I~t~~~N-------~tGDWi----A~g~~klgQLlVweWqs-----EsYV--lKQQgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 308 QKILTVSFN-------STGDWI----AFGCSKLGQLLVWEWQS-----ESYV--LKQQGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred ceeeEEEec-------ccCCEE----EEcCCccceEEEEEeec-----ccee--eeccccccceeeEEECCCCcEEEecc
Confidence 335555555 668888 666554 7899999863 2222 22368999999999999999999999
Q ss_pred CCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcE
Q 003871 461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT 537 (790)
Q Consensus 461 ~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~ 537 (790)
.||.|+|||.+++-+ ..++ ..|++.|+.+.|+ |+.+++.+ ||+|+.||+...+.
T Consensus 370 eDgKVKvWn~~SgfC--------------------~vTF---teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGFC--------------------FVTF---TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred CCCcEEEEeccCceE--------------------EEEe---ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 999999998776443 2332 2699999999999 88999999 99999999999999
Q ss_pred EEEEcCCCC-CeEEEEEcCCC-eEEEEeCCC-cEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 003871 538 LATFANPPP-IATYFILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 614 (790)
Q Consensus 538 ~~~~~~~~~-~v~~l~~s~~g-~l~sgs~dg-~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd 614 (790)
.++|..+.. ...|++..|.| .+.+|+.|. .|++|++++|+.+..+.||.++|.++.|+|++..||++|.|.+|++||
T Consensus 427 fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 999986543 56899999999 999999887 799999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCC----------------
Q 003871 615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPD---------------- 677 (790)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~---------------- 677 (790)
+-... ....++... ..+..++|+|+|+.++++ .||.|.+||...+..+.++.+.
T Consensus 507 if~s~----~~vEtl~i~-----sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~ 577 (893)
T KOG0291|consen 507 IFSSS----GTVETLEIR-----SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAE 577 (893)
T ss_pred eeccC----ceeeeEeec-----cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehh
Confidence 87631 122223222 469999999999999996 8999999999876555433221
Q ss_pred --CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecccccc-------------------------------
Q 003871 678 --KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA------------------------------- 724 (790)
Q Consensus 678 --~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~------------------------------- 724 (790)
.....++.+++|+||+++++||..+.|++||+.++-+++.+......
T Consensus 578 ~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e 657 (893)
T KOG0291|consen 578 NSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLE 657 (893)
T ss_pred hcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcccccccccccc
Confidence 12468999999999999999999999999999988777666532110
Q ss_pred ------CCC---------CcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 725 ------QPG---------TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 725 ------~~g---------h~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
.+| +....|.+.++.|+| +|+-+|.++..| +.||.+.+.
T Consensus 658 ~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEG-l~IYsld~~ 711 (893)
T KOG0291|consen 658 GRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEG-LLIYSLDTT 711 (893)
T ss_pred ccccccCCccccCCccccccCceEEEEEEEECC-CcCeeeeecccc-eEEEecCCc
Confidence 001 112256678999999 899999998887 777777543
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2e-37 Score=292.51 Aligned_cols=281 Identities=17% Similarity=0.221 Sum_probs=250.2
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.||.+.|.++.|++|++++++++.||.+.|||.-+... ..... -....|..++|+
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK--------------------~haip---l~s~WVMtCA~sPS 108 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK--------------------VHAIP---LPSSWVMTCAYSPS 108 (343)
T ss_pred cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc--------------------eeEEe---cCceeEEEEEECCC
Confidence 38999999999999999999999999999999665322 11111 267889999999
Q ss_pred CcEEEEec-CCeEEEEECCCC------cEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCCCC
Q 003871 516 GSHLFSAS-GGKISIFSLETF------QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 588 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~------~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~ 588 (790)
|+++|+|+ |+...||++.+. +..+.+.+|.+.+.|+.|-+|+.|++|+.|.+..+||+++|+.+..|.||.+.
T Consensus 109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gD 188 (343)
T KOG0286|consen 109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGD 188 (343)
T ss_pred CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCccc
Confidence 99999999 999999999854 45567889999999999998779999999999999999999999999999999
Q ss_pred EEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECC
Q 003871 589 ITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 666 (790)
Q Consensus 589 v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~ 666 (790)
|.++.++| +++.+++|+-|+..++||++.+ ...+ ...+|. ..|+++.|.|+|.-+++| .|+++++||++
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~-----~c~q-tF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-----QCVQ-TFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLR 259 (343)
T ss_pred EEEEecCCCCCCeEEecccccceeeeeccCc-----ceeE-eecccc---cccceEEEccCCCeeeecCCCceeEEEeec
Confidence 99999999 9999999999999999999985 3455 445677 799999999999999996 88999999999
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCC
Q 003871 667 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 746 (790)
Q Consensus 667 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 746 (790)
..+.+..+....-..+|++++||..|++|++|..|.++.+||.-.++.+..+. || .+.|. ++..+| ||.
T Consensus 260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~-------GH-eNRvS--cl~~s~-DG~ 328 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA-------GH-ENRVS--CLGVSP-DGM 328 (343)
T ss_pred CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee-------cc-CCeeE--EEEECC-CCc
Confidence 99999998765557899999999999999999999999999999999998887 66 55677 999999 999
Q ss_pred EEEEEeCCCcEEEEe
Q 003871 747 RIALGLTNGRVHVIE 761 (790)
Q Consensus 747 ~las~s~Dg~i~iW~ 761 (790)
-++|||.|.++|||.
T Consensus 329 av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 329 AVATGSWDSTLRIWA 343 (343)
T ss_pred EEEecchhHheeecC
Confidence 999999999999994
No 15
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.1e-37 Score=321.92 Aligned_cols=401 Identities=15% Similarity=0.144 Sum_probs=322.5
Q ss_pred ccccCccccchhhhhhhhccCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCC
Q 003871 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (790)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~ 379 (790)
|.|+||+..++....++.+|...|+ ++.|... +.|+.|. +||+-...-+ ..+.||.+.|
T Consensus 87 GsVqif~~~s~~~~~tfngHK~AVt--~l~fd~~G~rlaSGskDt~II--vwDlV~E~Gl--------~rL~GHkd~i-- 152 (888)
T KOG0306|consen 87 GSVQIFSLESEEILITFNGHKAAVT--TLKFDKIGTRLASGSKDTDII--VWDLVGEEGL--------FRLRGHKDSI-- 152 (888)
T ss_pred ceEEeeccCCCceeeeecccccceE--EEEEcccCceEeecCCCccEE--EEEeccceee--------EEeecchHHH--
Confidence 9999999999999999999999988 9999987 8999999 9999555554 7899999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEE
Q 003871 380 GDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL 459 (790)
Q Consensus 380 ~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~ 459 (790)
+..-|. .+.+++ ++.+.|+.|++||++ +..|...-+ +|.+.|+++++.+ +.++++
T Consensus 153 -----T~~~F~-------~~~~~l----vS~sKDs~iK~WdL~----tqhCf~Thv---d~r~Eiw~l~~~~--~~lvt~ 207 (888)
T KOG0306|consen 153 -----TQALFL-------NGDSFL----VSVSKDSMIKFWDLE----TQHCFETHV---DHRGEIWALVLDE--KLLVTA 207 (888)
T ss_pred -----hHHhcc-------CCCeEE----EEeccCceEEEEecc----cceeeeEEe---cccceEEEEEEec--ceEEEE
Confidence 899997 556778 999999999999997 688877654 6999999999998 679999
Q ss_pred eCCCcEEEEecCCCCc-----------c------c--ccccc--------------------cccc--------------
Q 003871 460 TQTATHKLWKWQSNKQ-----------S------L--EEENV--------------------NMES-------------- 486 (790)
Q Consensus 460 ~~dg~i~vw~~~~~~~-----------~------~--g~~~~--------------------~~~~-------------- 486 (790)
+.|+.+++|++....- . . |+... .+.+
T Consensus 208 ~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~ 287 (888)
T KOG0306|consen 208 GTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKL 287 (888)
T ss_pred ecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHH
Confidence 9999999999921100 0 0 00000 0000
Q ss_pred -----------------------------------------------------------ccccCCC-ce------eeeec
Q 003871 487 -----------------------------------------------------------QLYQPSS-KL------VMTND 500 (790)
Q Consensus 487 -----------------------------------------------------------~i~~~~~-~~------~~~~~ 500 (790)
..|..+. +. .....
T Consensus 288 k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i 367 (888)
T KOG0306|consen 288 KRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNI 367 (888)
T ss_pred HHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcccccccee
Confidence 0111100 00 01112
Q ss_pred ccCCCCCCeEEEEec--CcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc
Q 003871 501 IAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 577 (790)
Q Consensus 501 ~~~~~~~~V~~l~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~ 577 (790)
...+|...|.+++++ ...+++|+.+.+++|+..+.++++++... .+.+..|-|.+ ++++|...|.+.+||+.+..
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 223789999999999 44566666899999999999999999743 78889999999 99999999999999999999
Q ss_pred eEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee---ceeeeeeccCCCC---CCCCeEEEEEeCCCCE
Q 003871 578 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC---SKFLHSFQTGLVP---ETTIVNHIQFHPDQIH 651 (790)
Q Consensus 578 ~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~---~~~l~~~~~~~~~---~~~~v~~i~~sp~~~~ 651 (790)
.+..++.|.+.|.+++.+||++.+++||.|.+|++||..--.... .+.+. + .|.. ....|.|+.+||||++
T Consensus 446 l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ls-l--~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 446 LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLS-L--KHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeee-e--ccceEEeccccEEEEEEcCCCcE
Confidence 999999999999999999999999999999999999975311000 01011 0 0100 1157999999999999
Q ss_pred EEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcc
Q 003871 652 LLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 730 (790)
Q Consensus 652 l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~ 730 (790)
||+| -|++|+||-+.+.+..-++.+ |.-||.++..|||++.++|||.|.+|++|-++-|.+.+.+- +| +
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYG--HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-------AH-d 592 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYG--HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-------AH-D 592 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecc--cccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-------cc-c
Confidence 9998 899999999999988888875 79999999999999999999999999999999999888876 45 5
Q ss_pred cccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 731 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 731 ~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
+.|. +|.|-| ...++.++|.||.|+-||-..
T Consensus 593 DSvm--~V~F~P-~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 593 DSVM--SVQFLP-KTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred Ccee--EEEEcc-cceeEEEecCcceEEeechhh
Confidence 5555 999999 788999999999999998653
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-36 Score=281.88 Aligned_cols=293 Identities=17% Similarity=0.212 Sum_probs=245.5
Q ss_pred CCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-
Q 003871 438 NSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg-~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s- 515 (790)
.+|.+.|+.++..+.+ ..+++++.|.++.+|++..... +.|...+.. .+|...|..+..+
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~----------------~~G~~~r~~--~GHsH~v~dv~~s~ 73 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI----------------KYGVPVRRL--TGHSHFVSDVVLSS 73 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc----------------ccCceeeee--eccceEecceEEcc
Confidence 4799999999999874 5677888899999999987432 344444332 3799999999999
Q ss_pred -CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcC--CCCCEE
Q 003871 516 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRIT 590 (790)
Q Consensus 516 -~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~--h~~~v~ 590 (790)
|++.++++ |+++++||+.+++..+.|.+|...|.+++|++|+ .+++|+.|.+|.+||+.. .+..++.. +.+.|+
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVS 152 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEE
Confidence 99999999 9999999999999999999999999999999999 999999999999999874 44445443 378999
Q ss_pred EEEEeCC--CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCC
Q 003871 591 CLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (790)
Q Consensus 591 ~l~~spd--g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~ 667 (790)
++.|+|+ ..+|++++.|++|++||+++- .+.....+|. +.++.+++||||...++| .||.+.+||++.
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~------~l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL~~ 223 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNC------QLRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDLNE 223 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCc------chhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEccC
Confidence 9999997 689999999999999999983 2333455676 799999999999999995 899999999999
Q ss_pred CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCE
Q 003871 668 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 747 (790)
Q Consensus 668 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~ 747 (790)
++.+..+. |...|.+++|+|+.-+|+.+. +..|+|||++++..+..+.+....+ +...+.+.+++++|++ ||..
T Consensus 224 ~k~lysl~---a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG~t 297 (315)
T KOG0279|consen 224 GKNLYSLE---AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DGQT 297 (315)
T ss_pred CceeEecc---CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CCcE
Confidence 99988773 589999999999976666554 5669999999999888877543222 2223456788999999 8999
Q ss_pred EEEEeCCCcEEEEecCC
Q 003871 748 IALGLTNGRVHVIEPLE 764 (790)
Q Consensus 748 las~s~Dg~i~iW~~~~ 764 (790)
|.+|-.|+.|++|.+..
T Consensus 298 Lf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 298 LFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EEeeecCCcEEEEEeec
Confidence 99999999999998753
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.9e-36 Score=300.73 Aligned_cols=330 Identities=15% Similarity=0.184 Sum_probs=272.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCcccceeccCCCceEeeeccccCCCC-c------eeeeeccCCC
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSL-PDADSAVCAKSLEKSVNLKLQLINEPS-E------CRTLLLPDNS 439 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~-~la~~~at~s~d~~i~iwd~~~~~~~~-~------~~~~~l~~~~ 439 (790)
+.+. |..+| .+.+|+ |-.. .+ ++|+.|-+.++|++.+..... . +...-.....
T Consensus 173 kvl~-~~~~V-------~~~~Wn-------P~~~~ll----asg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~ 233 (524)
T KOG0273|consen 173 KVLR-HESEV-------FICAWN-------PLRDGLL----ASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVP 233 (524)
T ss_pred eecc-CCCce-------EEEecC-------chhhhhh----hccCCccceeeeeehhhccccchhhhhhhhhhhhcccCC
Confidence 3344 99999 899997 6555 66 999999999999997410000 0 1110001111
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--Cc
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 517 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~ 517 (790)
....|++++|+.+|..||+|+.||.+++|+...... . ....|.++|.++.|+ |.
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~----------------------~--tl~~HkgPI~slKWnk~G~ 289 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI----------------------S--TLGQHKGPIFSLKWNKKGT 289 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCchhh----------------------h--hhhccCCceEEEEEcCCCC
Confidence 346799999999999999999999999999765321 1 112599999999999 99
Q ss_pred EEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeC
Q 003871 518 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 596 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~sp 596 (790)
+|++++ |+++.+||..++.....+.-|..+-..+.|-.+..+++++.|+.|+++.+....++.++.+|.+.|+++.|+|
T Consensus 290 yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~ 369 (524)
T KOG0273|consen 290 YILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP 369 (524)
T ss_pred EEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC
Confidence 999999 9999999999999999999888886788887666899999999999999998999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCC---------CEEEE-EeCCcEEEEECC
Q 003871 597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ---------IHLLS-IHEGQIDVYEAP 666 (790)
Q Consensus 597 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~---------~~l~~-~~dg~I~iwd~~ 666 (790)
.|.+|+++|+|+++++|...... ... -...|. ..|..+.|+|+| ..+++ +.|++|++||+.
T Consensus 370 tg~LLaS~SdD~TlkiWs~~~~~-----~~~-~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~ 440 (524)
T KOG0273|consen 370 TGSLLASCSDDGTLKIWSMGQSN-----SVH-DLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE 440 (524)
T ss_pred CCceEEEecCCCeeEeeecCCCc-----chh-hhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence 99999999999999999987632 222 122555 689999999965 34555 699999999999
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCC
Q 003871 667 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 746 (790)
Q Consensus 667 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 746 (790)
.+.++.+|.. |..+|++++|+|+|+|+++|+.||.|.+|+.+++++.+.+. | .+.|. .++|+- +|+
T Consensus 441 ~gv~i~~f~k--H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-------~--~~~If--el~Wn~-~G~ 506 (524)
T KOG0273|consen 441 SGVPIHTLMK--HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-------G--TGGIF--ELCWNA-AGD 506 (524)
T ss_pred CCceeEeecc--CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-------C--CCeEE--EEEEcC-CCC
Confidence 9999999864 79999999999999999999999999999999999999876 2 34456 999999 789
Q ss_pred EEEEEeCCCcEEEEecC
Q 003871 747 RIALGLTNGRVHVIEPL 763 (790)
Q Consensus 747 ~las~s~Dg~i~iW~~~ 763 (790)
.|..+-.||.+++-|+.
T Consensus 507 kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 507 KLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEEecCCCceEEEec
Confidence 99999999999998864
No 18
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-35 Score=301.22 Aligned_cols=379 Identities=11% Similarity=0.077 Sum_probs=297.6
Q ss_pred ccccCccccchhhhhhhhccCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCC---CCCCC
Q 003871 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQE---GRPLD 376 (790)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~---~h~~~ 376 (790)
+.|.++.-..-+...+++.|...|. |+.|||| +.|+.+. +||-.+|+.+ ..|. +|.+.
T Consensus 170 n~v~ffeGPPFKFk~s~r~HskFV~--~VRysPDG~~Fat~gsDgki~--iyDGktge~v--------g~l~~~~aHkGs 237 (603)
T KOG0318|consen 170 NTVAFFEGPPFKFKSSFREHSKFVN--CVRYSPDGSRFATAGSDGKIY--IYDGKTGEKV--------GELEDSDAHKGS 237 (603)
T ss_pred CeEEEeeCCCeeeeeccccccccee--eEEECCCCCeEEEecCCccEE--EEcCCCccEE--------EEecCCCCcccc
Confidence 6666666667777888999999877 9999999 8999999 9999999987 6666 89999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEE
Q 003871 377 ASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 456 (790)
Q Consensus 377 v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l 456 (790)
| .+++|+ ||++.+ +|++.|.+++|||+.. .....++.+... -.+.-..+-|. +..|
T Consensus 238 I-------falsWs-------PDs~~~----~T~SaDkt~KIWdVs~---~slv~t~~~~~~-v~dqqvG~lWq--kd~l 293 (603)
T KOG0318|consen 238 I-------FALSWS-------PDSTQF----LTVSADKTIKIWDVST---NSLVSTWPMGST-VEDQQVGCLWQ--KDHL 293 (603)
T ss_pred E-------EEEEEC-------CCCceE----EEecCCceEEEEEeec---cceEEEeecCCc-hhceEEEEEEe--CCeE
Confidence 9 999999 999999 9999999999999985 344556555332 12344455566 4579
Q ss_pred EEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECC
Q 003871 457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE 533 (790)
Q Consensus 457 ~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~ 533 (790)
++.+.+|+|.+++...... .. ...+|...|++++.+ +.+|++|+ ||.|.-|+..
T Consensus 294 ItVSl~G~in~ln~~d~~~---------------------~~--~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSV---------------------LK--VISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred EEEEcCcEEEEecccCCCh---------------------hh--eecccccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence 9999999999988765322 11 123899999999999 89999999 9999999999
Q ss_pred CCcEEEEE-cCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCc------------e-------------------EEE
Q 003871 534 TFQTLATF-ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK------------T-------------------KAK 581 (790)
Q Consensus 534 ~~~~~~~~-~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~------------~-------------------~~~ 581 (790)
+|..-+.. ++|...|.+++-+..+.+++.+.|.++++.++..+. + +..
T Consensus 351 ~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~ 430 (603)
T KOG0318|consen 351 SGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVL 430 (603)
T ss_pred CccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEE
Confidence 88766554 678999999998876677788888899998763210 0 001
Q ss_pred EcCCC--------CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEE
Q 003871 582 LKGHQ--------NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 653 (790)
Q Consensus 582 l~~h~--------~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~ 653 (790)
++.+. ....+++++|+++.++.|+.|+.|++|.+..+...... ....|. ++|++++||||+.+||
T Consensus 431 l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~----~~~~h~---a~iT~vaySpd~~yla 503 (603)
T KOG0318|consen 431 LQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEA----KLLEHR---AAITDVAYSPDGAYLA 503 (603)
T ss_pred EecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccccee----eeeccc---CCceEEEECCCCcEEE
Confidence 11111 23568999999999999999999999999986532211 122444 7999999999999999
Q ss_pred EE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccc
Q 003871 654 SI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 732 (790)
Q Consensus 654 ~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~ 732 (790)
++ ..+.+.+||+.+.+....... -|...|.+++|+|+...+|+|+-|..|.||+++.....-.+. +.|...
T Consensus 504 ~~Da~rkvv~yd~~s~~~~~~~w~-FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik-------nAH~~g 575 (603)
T KOG0318|consen 504 AGDASRKVVLYDVASREVKTNRWA-FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK-------NAHLGG 575 (603)
T ss_pred EeccCCcEEEEEcccCceecceee-eeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec-------cccccC
Confidence 98 789999999998876332222 378999999999999999999999999999998765443332 333445
Q ss_pred cceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 733 LYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 733 v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
|+ .+.|-. ...+++.|.|..|++|.+.
T Consensus 576 Vn--~v~wld--e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 576 VN--SVAWLD--ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ce--eEEEec--CceEEeccCcceeEEeccc
Confidence 77 899974 6899999999999999874
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-36 Score=281.55 Aligned_cols=290 Identities=16% Similarity=0.208 Sum_probs=240.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCcccceeccCCCceEeeeccccC-CCCceeeeeccCCCCCCce
Q 003871 367 KPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTS-LPDADSAVCAKSLEKSVNLKLQLIN-EPSECRTLLLPDNSFGGRV 444 (790)
Q Consensus 367 ~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg-~~la~~~at~s~d~~i~iwd~~~~~-~~~~~~~~~l~~~~h~~~V 444 (790)
..++++|++.| +.++.. +.+ ..+ ++++.|.++.+|++.... +.+...+ .+ .||+..|
T Consensus 8 ~~tl~gh~d~V-------t~la~~-------~~~~~~l----~sasrDk~ii~W~L~~dd~~~G~~~r-~~--~GHsH~v 66 (315)
T KOG0279|consen 8 RGTLEGHTDWV-------TALAIK-------IKNSDIL----VSASRDKTIIVWKLTSDDIKYGVPVR-RL--TGHSHFV 66 (315)
T ss_pred eeeecCCCceE-------EEEEee-------cCCCceE----EEcccceEEEEEEeccCccccCceee-ee--eccceEe
Confidence 37889999999 898887 553 345 999999999999996421 1222222 12 4799999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEe
Q 003871 445 VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 522 (790)
Q Consensus 445 ~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~ 522 (790)
..+..++||++.++++.|+++++||+.++.. ..+ ..+|...|.+++|+ ++.+++|
T Consensus 67 ~dv~~s~dg~~alS~swD~~lrlWDl~~g~~--------------------t~~---f~GH~~dVlsva~s~dn~qivSG 123 (315)
T KOG0279|consen 67 SDVVLSSDGNFALSASWDGTLRLWDLATGES--------------------TRR---FVGHTKDVLSVAFSTDNRQIVSG 123 (315)
T ss_pred cceEEccCCceEEeccccceEEEEEecCCcE--------------------EEE---EEecCCceEEEEecCCCceeecC
Confidence 9999999999999999999999999887533 111 12899999999999 8899999
Q ss_pred c-CCeEEEEECCCCcEEEEEcCC--CCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeC
Q 003871 523 S-GGKISIFSLETFQTLATFANP--PPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 596 (790)
Q Consensus 523 s-dg~I~vwd~~~~~~~~~~~~~--~~~v~~l~~s~~--g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~sp 596 (790)
+ |.+|++|++. +.+..++..+ .+-|+|+.|+|+ . .|++++.|++|++||+++.+....+.+|++.++.+++||
T Consensus 124 SrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp 202 (315)
T KOG0279|consen 124 SRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP 202 (315)
T ss_pred CCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC
Confidence 9 9999999998 4555555433 678999999999 4 999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecC
Q 003871 597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP 676 (790)
Q Consensus 597 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~ 676 (790)
||..+++|+.||.+.+||++.++ .++++.. . ..|.+++|+|+.-.|+.+.+..|+|||+.++.++..+..
T Consensus 203 DGslcasGgkdg~~~LwdL~~~k-----~lysl~a--~---~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 203 DGSLCASGGKDGEAMLWDLNEGK-----NLYSLEA--F---DIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred CCCEEecCCCCceEEEEEccCCc-----eeEeccC--C---CeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccc
Confidence 99999999999999999999855 3442322 2 589999999998888888888899999999988877654
Q ss_pred CCC-------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 677 DKM-------DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 677 ~~h-------~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
..- .....+++|++||..|++|-.|+.|++|.+..
T Consensus 273 d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 273 DGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 321 23467789999999999999999999998753
No 20
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-35 Score=309.28 Aligned_cols=388 Identities=13% Similarity=0.116 Sum_probs=317.3
Q ss_pred CCcccccccccchhhhhchhhhhcCccccccccCccccchhhhhhhhccCCCccccccccCCC-------CCCCcceeee
Q 003871 278 QQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKD 350 (790)
Q Consensus 278 ~~~l~s~~~d~v~l~~~~~~~~~~~~~la~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~i 350 (790)
+.++||||+| +.|.+||+....-+..+.+|.+.++ .+-|..+ +.|++|+ +
T Consensus 119 G~rlaSGskD-------------------t~IIvwDlV~E~Gl~rL~GHkd~iT--~~~F~~~~~~lvS~sKDs~iK--~ 175 (888)
T KOG0306|consen 119 GTRLASGSKD-------------------TDIIVWDLVGEEGLFRLRGHKDSIT--QALFLNGDSFLVSVSKDSMIK--F 175 (888)
T ss_pred CceEeecCCC-------------------ccEEEEEeccceeeEEeecchHHHh--HHhccCCCeEEEEeccCceEE--E
Confidence 4899999999 8888899888888899999999988 9999984 9999999 9
Q ss_pred ccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCC---
Q 003871 351 FPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEP--- 427 (790)
Q Consensus 351 wd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~--- 427 (790)
||+++..|. .+.-+|.+.+ |.+++. ++.+ ++++.|+.+++|++....+.
T Consensus 176 WdL~tqhCf--------~Thvd~r~Ei-------w~l~~~---------~~~l----vt~~~dse~~v~~L~~~~D~~~~ 227 (888)
T KOG0306|consen 176 WDLETQHCF--------ETHVDHRGEI-------WALVLD---------EKLL----VTAGTDSELKVWELAFEDDEKET 227 (888)
T ss_pred Eecccceee--------eEEecccceE-------EEEEEe---------cceE----EEEecCCceEEEEeecccccccc
Confidence 999999997 8888999999 999997 4777 99999999999998210000
Q ss_pred ----------------------------Cc--------------------------------------------------
Q 003871 428 ----------------------------SE-------------------------------------------------- 429 (790)
Q Consensus 428 ----------------------------~~-------------------------------------------------- 429 (790)
..
T Consensus 228 ~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl 307 (888)
T KOG0306|consen 228 NRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSL 307 (888)
T ss_pred cccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhH
Confidence 00
Q ss_pred ---------------------------e-------------eeee--------------ccCCCCCCceEEEEEcCCCCE
Q 003871 430 ---------------------------C-------------RTLL--------------LPDNSFGGRVVRLIYSHSGDF 455 (790)
Q Consensus 430 ---------------------------~-------------~~~~--------------l~~~~h~~~V~~l~~spdg~~ 455 (790)
. ..+. +...||...|.++++|.|...
T Consensus 308 ~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~ 387 (888)
T KOG0306|consen 308 SDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSIL 387 (888)
T ss_pred HHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCcee
Confidence 0 0000 111468888888888887764
Q ss_pred EEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEEC
Q 003871 456 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSL 532 (790)
Q Consensus 456 l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~ 532 (790)
+++| ..+.+++|+..+.++ +... ....+.+..|. ++++++|. .|.+.+||+
T Consensus 388 ~~Sg-a~~SikiWn~~t~kc---------------------iRTi----~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 388 LASG-AGESIKIWNRDTLKC---------------------IRTI----TCGYILASKFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred eeec-CCCcEEEEEccCcce---------------------eEEe----ccccEEEEEecCCCceEEEeccCCceEEEEe
Confidence 4444 357788887765443 3322 23477788888 78899999 799999999
Q ss_pred CCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-----CceEEEEcC-------CCCCEEEEEEeCCCC
Q 003871 533 ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-----KKTKAKLKG-------HQNRITCLAYSLSLN 599 (790)
Q Consensus 533 ~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~-----~~~~~~l~~-------h~~~v~~l~~spdg~ 599 (790)
.+...+.+++.|.+.|++++.+||+ .+++||.|.+|++||..- |...+.+.- -...|.|+.+||||+
T Consensus 442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred ehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 9999999999999999999999999 999999999999999641 211111211 346799999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCC
Q 003871 600 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK 678 (790)
Q Consensus 600 ~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~ 678 (790)
+||++--|.+|+||-+++-+ +.-...||. -||.|+.++||++.+++| .|..|++|-+.-|.|.+.+..
T Consensus 522 ~LaVsLLdnTVkVyflDtlK------FflsLYGHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA-- 590 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLK------FFLSLYGHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA-- 590 (888)
T ss_pred EEEEEeccCeEEEEEeccee------eeeeecccc---cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc--
Confidence 99999999999999999832 221344676 699999999999999995 899999999999999999865
Q ss_pred CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEE
Q 003871 679 MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVH 758 (790)
Q Consensus 679 h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~ 758 (790)
|...|.++.|-|+...+.++|.|+.|+-||-.+-+.+..+. ||+. .|+ +++.+| +|.+++|+|.|.+|+
T Consensus 591 HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H~~-ev~--cLav~~-~G~~vvs~shD~sIR 659 (888)
T KOG0306|consen 591 HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GHHS-EVW--CLAVSP-NGSFVVSSSHDKSIR 659 (888)
T ss_pred ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-------cchh-eee--eeEEcC-CCCeEEeccCCceeE
Confidence 78999999999999999999999999999999998888887 6655 688 999999 899999999999999
Q ss_pred EEecCC
Q 003871 759 VIEPLE 764 (790)
Q Consensus 759 iW~~~~ 764 (790)
+|.-..
T Consensus 660 lwE~td 665 (888)
T KOG0306|consen 660 LWERTD 665 (888)
T ss_pred eeeccC
Confidence 998654
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.9e-34 Score=262.10 Aligned_cols=282 Identities=15% Similarity=0.182 Sum_probs=232.4
Q ss_pred ceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccccccccc
Q 003871 407 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES 486 (790)
Q Consensus 407 ~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~ 486 (790)
+||+|.|.+||+|... ++.|.... +-..+.|..+..+||+++||+++. ..|++||+.++..
T Consensus 13 LvsA~YDhTIRfWqa~----tG~C~rTi---qh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np----------- 73 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQAL----TGICSRTI---QHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP----------- 73 (311)
T ss_pred EEeccCcceeeeeehh----cCeEEEEE---ecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-----------
Confidence 4999999999999997 68776533 123578999999999998888775 6799999987543
Q ss_pred ccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEE
Q 003871 487 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG 562 (790)
Q Consensus 487 ~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg 562 (790)
. -+.. .++|...|+++.|. |+.+++|+ ||+++|||++...+.+.++ +..+|+++..+|+. .|++|
T Consensus 74 -----~--Pv~t---~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~ 142 (311)
T KOG0315|consen 74 -----N--PVAT---FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISG 142 (311)
T ss_pred -----C--ceeE---EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEee
Confidence 0 0222 23799999999999 99999999 9999999999977777776 66999999999999 99999
Q ss_pred eCCCcEEEEeCCCCceEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee-ceeeeeeccCCCCCCCCe
Q 003871 563 FDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC-SKFLHSFQTGLVPETTIV 640 (790)
Q Consensus 563 s~dg~I~iwd~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~-~~~l~~~~~~~~~~~~~v 640 (790)
..+|.|++||+....+...+. .....|.++...|||.+++.+...|..++|++-+..... ..++.+ ...|. +.+
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k-~~ah~---~~i 218 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHK-FQAHN---GHI 218 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhh-eeccc---ceE
Confidence 999999999999876665553 345689999999999999999999999999998743221 223332 23455 689
Q ss_pred EEEEEeCCCCEEEE-EeCCcEEEEECCCC-ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 003871 641 NHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 641 ~~i~~sp~~~~l~~-~~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~ 718 (790)
..+.+|||+++||+ +.|.+++||+..+. +....+ ..|...++..+||.||+||++|+.|+.+++|++..++.+..+
T Consensus 219 l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l--~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 219 LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVL--TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEe--ecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec
Confidence 99999999999999 59999999999877 333334 347899999999999999999999999999999999998887
Q ss_pred ccccccCCCCccc
Q 003871 719 NLTAYAQPGTISL 731 (790)
Q Consensus 719 ~~~~~~~~gh~~~ 731 (790)
. ||+..
T Consensus 297 ~-------gh~K~ 302 (311)
T KOG0315|consen 297 Q-------GHHKA 302 (311)
T ss_pred C-------Ccccc
Confidence 6 67665
No 22
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=273.98 Aligned_cols=330 Identities=13% Similarity=0.164 Sum_probs=271.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
.+|..|+++| .+++.+ |+.+++ +||+.|..-.+|+... +... ..+ .+|.+.|+++
T Consensus 58 ~tF~~H~~sv-------Favsl~-------P~~~l~----aTGGgDD~AflW~~~~----ge~~-~el--tgHKDSVt~~ 112 (399)
T KOG0296|consen 58 VTFDKHTDSV-------FAVSLH-------PNNNLV----ATGGGDDLAFLWDIST----GEFA-GEL--TGHKDSVTCC 112 (399)
T ss_pred eehhhcCCce-------EEEEeC-------CCCceE----EecCCCceEEEEEccC----Ccce-eEe--cCCCCceEEE
Confidence 6788999999 999998 888888 9999999999999984 3322 122 4799999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-C
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 524 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-d 524 (790)
.||.||.+||+|+.+|.|+||+..++.. .... . ..-..+.-+.|+ +..|++|+ |
T Consensus 113 ~FshdgtlLATGdmsG~v~v~~~stg~~--------------------~~~~-~--~e~~dieWl~WHp~a~illAG~~D 169 (399)
T KOG0296|consen 113 SFSHDGTLLATGDMSGKVLVFKVSTGGE--------------------QWKL-D--QEVEDIEWLKWHPRAHILLAGSTD 169 (399)
T ss_pred EEccCceEEEecCCCccEEEEEcccCce--------------------EEEe-e--cccCceEEEEecccccEEEeecCC
Confidence 9999999999999999999999887543 1111 0 244567778888 88899999 9
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcC-CCCCEEEEEEeCCCCEEE
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLV 602 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~-h~~~v~~l~~spdg~~l~ 602 (790)
|.+.+|.+.+....+.+.+|..++++=.|.|+| .+++|..||+|++||+.+++++..+.+ ......++.++.++..++
T Consensus 170 GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 170 GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT 249 (399)
T ss_pred CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence 999999999988889999999999999999999 999999999999999999999888864 334677889999999999
Q ss_pred EEeCCCcEEEEECCCCceeecee--eeeeccCCCCCCCCeEEEEEeC---CCCEEEEE-eCCcEEEEECCCCceeeeecC
Q 003871 603 SSGADAQLCVWDAVGWKKLCSKF--LHSFQTGLVPETTIVNHIQFHP---DQIHLLSI-HEGQIDVYEAPTLNHTSQLVP 676 (790)
Q Consensus 603 s~s~dg~I~vwd~~~~~~~~~~~--l~~~~~~~~~~~~~v~~i~~sp---~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~ 676 (790)
.|+.++.+++-+..+|+.+.... ...+...+. ..+.++.+.| .=.+.|+| -||+|.|||+...++...+.
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e---~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~- 325 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQE---ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE- 325 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccccch---hhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-
Confidence 99999999999988876543221 111222333 3444554444 44566675 89999999998887766663
Q ss_pred CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCc
Q 003871 677 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 756 (790)
Q Consensus 677 ~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~ 756 (790)
|..+|+.+.|-+ ..+|++++.||.|+.||.++|+++..+. || ...|. +++.+| ++++++|+|.|++
T Consensus 326 --he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~-------GH-~~~Il--~f~ls~-~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 326 --HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT-------GH-QMGIL--DFALSP-QKRLVVTVSDDNT 391 (399)
T ss_pred --CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe-------cC-chhee--EEEEcC-CCcEEEEecCCCe
Confidence 688899999998 7899999999999999999999999987 76 44566 999999 8999999999999
Q ss_pred EEEEecC
Q 003871 757 VHVIEPL 763 (790)
Q Consensus 757 i~iW~~~ 763 (790)
.+||++.
T Consensus 392 a~VF~v~ 398 (399)
T KOG0296|consen 392 ALVFEVP 398 (399)
T ss_pred EEEEecC
Confidence 9999875
No 23
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=268.20 Aligned_cols=280 Identities=14% Similarity=0.181 Sum_probs=241.5
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.+|++.|..+.|+|+|.++|+||.|..|.+|+...... ......+|.++|..+.|.
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----------------------N~~~lkgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE----------------------NFWVLKGHSGAVMELHGMRD 101 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc----------------------ceeeeccccceeEeeeeccC
Confidence 57999999999999999999999999999999654211 111123799999999999
Q ss_pred CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEE
Q 003871 516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 592 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l 592 (790)
++.+++++ |.+++.||+++|++++++++|..-|+++.-+.-| ++.+|+.||++++||+++...++.+. ....++++
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv 180 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAV 180 (338)
T ss_pred CCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEE
Confidence 88999998 9999999999999999999999999999876667 88999999999999999988887775 45679999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCC----
Q 003871 593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT---- 667 (790)
Q Consensus 593 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~---- 667 (790)
.|..++..+.+|+-|+.|++||++.+ ..+. +..||. .+|+.+..+|+|.++.+ +.|.++++||++-
T Consensus 181 ~f~d~s~qv~sggIdn~ikvWd~r~~-----d~~~-~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 181 GFKDTSDQVISGGIDNDIKVWDLRKN-----DGLY-TLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred EecccccceeeccccCceeeeccccC-----cceE-Eeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 99999999999999999999999873 3344 566787 79999999999999999 7999999999873
Q ss_pred CceeeeecCCCCC--CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCC
Q 003871 668 LNHTSQLVPDKMD--LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 745 (790)
Q Consensus 668 ~~~~~~~~~~~h~--~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 745 (790)
.+++..+.++.|. .....++|+|+++++.+|+.|..+++||..+...+..+. || .+.|+ ++.|+| ..
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp-------Gh-~gsvn--~~~Fhp-~e 320 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP-------GH-YGSVN--EVDFHP-TE 320 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC-------Cc-ceeEE--EeeecC-CC
Confidence 4557788776663 456678899999999999999999999999888777765 76 44666 999999 78
Q ss_pred CEEEEEeCCCcEEEE
Q 003871 746 NRIALGLTNGRVHVI 760 (790)
Q Consensus 746 ~~las~s~Dg~i~iW 760 (790)
.+|.+++.|.+|++=
T Consensus 321 ~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 321 PIILSCSSDKTIYLG 335 (338)
T ss_pred cEEEEeccCceeEee
Confidence 999999999999863
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.6e-33 Score=258.69 Aligned_cols=270 Identities=14% Similarity=0.169 Sum_probs=224.7
Q ss_pred CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEecCCeEEEEE
Q 003871 454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFS 531 (790)
Q Consensus 454 ~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~sdg~I~vwd 531 (790)
-+|+++|.|.+|++|...++. +..... ..++.|+.+.+. ++.||+++...|++||
T Consensus 11 viLvsA~YDhTIRfWqa~tG~---------------------C~rTiq--h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD 67 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI---------------------CSRTIQ--HPDSQVNRLEITPDKKDLAAAGNQHVRLYD 67 (311)
T ss_pred eEEEeccCcceeeeeehhcCe---------------------EEEEEe--cCccceeeEEEcCCcchhhhccCCeeEEEE
Confidence 478999999999998776544 333322 457789999999 7888999999999999
Q ss_pred CCCCc--EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Q 003871 532 LETFQ--TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA 608 (790)
Q Consensus 532 ~~~~~--~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg 608 (790)
+.++. ++.+|.+|...|+++.|..+| .+++|++||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|
T Consensus 68 ~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg 146 (311)
T KOG0315|consen 68 LNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSG 146 (311)
T ss_pred ccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCC
Confidence 98864 688999999999999999999 99999999999999999866655555 779999999999988999999999
Q ss_pred cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCc------eeeeecCCCCCC
Q 003871 609 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN------HTSQLVPDKMDL 681 (790)
Q Consensus 609 ~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~------~~~~~~~~~h~~ 681 (790)
.|++||+....... .+ +++.. ..|.++...|||.+++.. ..|.+++|++-+.. ++.++. .|..
T Consensus 147 ~irvWDl~~~~c~~--~l--iPe~~----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~--ah~~ 216 (311)
T KOG0315|consen 147 NIRVWDLGENSCTH--EL--IPEDD----TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ--AHNG 216 (311)
T ss_pred cEEEEEccCCcccc--cc--CCCCC----cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee--cccc
Confidence 99999998743211 11 23333 489999999999999986 78999999987643 333443 3788
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEE
Q 003871 682 PITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 760 (790)
Q Consensus 682 ~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW 760 (790)
.+..+.+|||+++|+++|.|.+++||+.++- +....+. || ...++ +++||. ||.||+||+.|+.+++|
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~-------gh-~rWvW--dc~FS~-dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT-------GH-QRWVW--DCAFSA-DGEYLVTASSDHTARLW 285 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee-------cC-CceEE--eeeecc-CccEEEecCCCCceeec
Confidence 9999999999999999999999999999987 4444444 55 45777 999999 99999999999999999
Q ss_pred ecCCCccc
Q 003871 761 EPLESEVE 768 (790)
Q Consensus 761 ~~~~~~~~ 768 (790)
++..++..
T Consensus 286 ~~~~~k~v 293 (311)
T KOG0315|consen 286 DLSAGKEV 293 (311)
T ss_pred ccccCcee
Confidence 99999844
No 25
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-32 Score=256.46 Aligned_cols=289 Identities=18% Similarity=0.206 Sum_probs=233.0
Q ss_pred CCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-
Q 003871 438 NSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spd-g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s- 515 (790)
++|.++++.++|+|- |..||++|.|+.|++|+...+.. | .....+.++|+..|.+++|+
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-------------~------~ck~vld~~hkrsVRsvAwsp 71 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-------------W------TCKTVLDDGHKRSVRSVAWSP 71 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-------------E------EEEEeccccchheeeeeeecC
Confidence 479999999999998 89999999999999999774211 1 22223345799999999999
Q ss_pred -CcEEEEec-CCeEEEEECCC--CcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC---ceEEEEcCCCC
Q 003871 516 -GSHLFSAS-GGKISIFSLET--FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQN 587 (790)
Q Consensus 516 -~~~l~s~s-dg~I~vwd~~~--~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~---~~~~~l~~h~~ 587 (790)
|++|++++ |.++.||.-.. .+++.++++|...|.|++|+++| +||+++.|+.|-||.+..+ ++...+.+|+.
T Consensus 72 ~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 72 HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc
Confidence 99999999 99999998764 47889999999999999999999 9999999999999998754 56778899999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECC-CCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEEC
Q 003871 588 RITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (790)
Q Consensus 588 ~v~~l~~spdg~~l~s~s~dg~I~vwd~~-~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~ 665 (790)
.|..+.|+|...+|+++|.|.+|++|+-. ... ....+ ...+|. ..|.+++|+|.|..|+++ .|++++||-.
T Consensus 152 DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~ddd---W~c~~-tl~g~~---~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 152 DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDD---WECVQ-TLDGHE---NTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred cccEEEEcCCcceeEEeccCCeEEEEeecCCCC---eeEEE-EecCcc---ceEEEEEecCCCceEEEecCCcceEeeee
Confidence 99999999988899999999999999877 322 23344 334565 589999999999999885 8999999986
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCC
Q 003871 666 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 745 (790)
Q Consensus 666 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 745 (790)
.+. +. ..|...++.+.|. ...|++++.|+.|++|.-..+-....+... +...+.|...|+ ++.|+|..+
T Consensus 225 ~~~-----~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVN--sV~w~p~~~ 293 (312)
T KOG0645|consen 225 YTD-----LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVN--SVQWNPKVS 293 (312)
T ss_pred ccC-----cc-hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHH-Hhhhcccccccc--eEEEcCCCC
Confidence 522 21 2368899999998 458999999999999987753221222111 111133455777 999999547
Q ss_pred CEEEEEeCCCcEEEEecC
Q 003871 746 NRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 746 ~~las~s~Dg~i~iW~~~ 763 (790)
++|++||+||.|++|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 899999999999999875
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=285.17 Aligned_cols=279 Identities=18% Similarity=0.233 Sum_probs=238.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcE
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 518 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~ 518 (790)
...|..+.|.|+|+.|++|+..|.+.+|+..+ +.-.++...|+.+|.++.|+ +.+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-----------------------fnFEtilQaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-----------------------FNFETILQAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce-----------------------eeHHHHhhhhcccceeEEEccCCCE
Confidence 56799999999999999999999999998643 11112334799999999999 899
Q ss_pred EEEec-CCeEEEEECCCCcEEEEEcCC-CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEe
Q 003871 519 LFSAS-GGKISIFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 595 (790)
Q Consensus 519 l~s~s-dg~I~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~s 595 (790)
+++|+ +|.|++|+..- ..++.+..| ...|++++|+|++ .++++++||+|+|||....+.-..+.||.-.|.+++|+
T Consensus 153 miSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH 231 (464)
T ss_pred EEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence 99999 89999999864 344555544 4899999999999 99999999999999999888888899999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeee
Q 003871 596 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 674 (790)
Q Consensus 596 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~ 674 (790)
|....+|+||.|..|++||.++|..+. ...+|. ..|..+.|+|++.+|++ |.|..++++|+++.+.+.++
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~cl~------tlh~HK---ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGSCLA------TLHGHK---NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred CccceeEEccCCceeEeecCCCcchhh------hhhhcc---ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Confidence 999999999999999999999976443 223555 68999999999999999 58999999999988888888
Q ss_pred cCCCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeC
Q 003871 675 VPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 753 (790)
Q Consensus 675 ~~~~h~~~v~~l~~s~-dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~ 753 (790)
.+ |...|+++.|+| ...++.+|+.||.|..|.+...+.+..+. .+| ...|+ +++||| -|.+|++|+.
T Consensus 303 r~--Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~------~AH-d~~iw--sl~~hP-lGhil~tgsn 370 (464)
T KOG0284|consen 303 RG--HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP------PAH-DGEIW--SLAYHP-LGHILATGSN 370 (464)
T ss_pred hc--chhhheeeccccccccceeeccCCCceEEEeccccccccCCC------ccc-cccee--eeeccc-cceeEeecCC
Confidence 65 799999999999 45688899999999999998555554433 245 66788 999999 7999999999
Q ss_pred CCcEEEEecCC
Q 003871 754 NGRVHVIEPLE 764 (790)
Q Consensus 754 Dg~i~iW~~~~ 764 (790)
|.++++|.-..
T Consensus 371 d~t~rfw~r~r 381 (464)
T KOG0284|consen 371 DRTVRFWTRNR 381 (464)
T ss_pred CcceeeeccCC
Confidence 99999997543
No 27
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-33 Score=273.22 Aligned_cols=279 Identities=18% Similarity=0.177 Sum_probs=245.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
+|..+|+.+.|+|+-..+++++.|++|++||..++.. .. ...+|.+.|.+++|+ |
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---------------------e~--~LrGHt~sv~di~~~a~G 162 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---------------------ER--SLRGHTDSVFDISFDASG 162 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhh---------------------hh--hhhccccceeEEEEecCc
Confidence 6999999999999999999999999999999887543 11 123899999999999 9
Q ss_pred cEEEEec-CCeEEEEECCC-CcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEE
Q 003871 517 SHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 593 (790)
Q Consensus 517 ~~l~s~s-dg~I~vwd~~~-~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~ 593 (790)
.++++++ |-.+++||..+ .++++...+|...|.+++|-|.| ++++++.|.+|+.|++.+|-+++++.+|...|..++
T Consensus 163 k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~ 242 (406)
T KOG0295|consen 163 KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVR 242 (406)
T ss_pred cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEE
Confidence 9999999 77799999987 67888888999999999999999 999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC---------------CCEEEEE-eC
Q 003871 594 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---------------QIHLLSI-HE 657 (790)
Q Consensus 594 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~---------------~~~l~~~-~d 657 (790)
.+.||..+|+++.|.++++|-+.+++. .. ...+|. -+|-+++|-|. +.++.++ .|
T Consensus 243 v~~DGti~As~s~dqtl~vW~~~t~~~-----k~-~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 243 VNQDGTIIASCSNDQTLRVWVVATKQC-----KA-ELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred ecCCeeEEEecCCCceEEEEEeccchh-----hh-hhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 999999999999999999999998432 11 333555 57888888763 2467764 89
Q ss_pred CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEE
Q 003871 658 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 737 (790)
Q Consensus 658 g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 737 (790)
++|++||+.++.++.++.+ |...|..++|+|.|+||+++.+|+++++||+++++....+.++ ..- +++
T Consensus 314 ktIk~wdv~tg~cL~tL~g--hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah--------~hf--vt~ 381 (406)
T KOG0295|consen 314 KTIKIWDVSTGMCLFTLVG--HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH--------EHF--VTS 381 (406)
T ss_pred ceEEEEeccCCeEEEEEec--ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC--------cce--eEE
Confidence 9999999999999999975 7999999999999999999999999999999999999888743 223 449
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEec
Q 003871 738 IAAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 738 v~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
+.|+. +..+++||+-|.++++|..
T Consensus 382 lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 382 LDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EecCC-CCceEEeccccceeeeeec
Confidence 99999 7889999999999999974
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.1e-34 Score=303.86 Aligned_cols=274 Identities=16% Similarity=0.186 Sum_probs=234.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEE
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLF 520 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~ 520 (790)
...+.|..|++|+..||.|-.|..|++|.+..... -... +...+ ..+=
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl-------------~~lk------------~~~~l-------~~~d 425 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL-------------KKLK------------DASDL-------SNID 425 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhh-------------cccc------------chhhh-------cccc
Confidence 46799999999999888888899999999875322 0000 00000 0011
Q ss_pred Eec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCC
Q 003871 521 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL 598 (790)
Q Consensus 521 s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg 598 (790)
+.+ |-.+.+.|-......+++.+|.++|..+.|+|+. +|+++|.|++|++|.+.+..++-.++||..+|..+.|+|.|
T Consensus 426 ~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G 505 (707)
T KOG0263|consen 426 TESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG 505 (707)
T ss_pred ccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc
Confidence 122 2235566666677777899999999999999999 99999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCC
Q 003871 599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPD 677 (790)
Q Consensus 599 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~ 677 (790)
-++||||.|++-++|.... ..+++ +..+|- +.|.|+.|+|++.|+++| .|.+|++||+.+|..++.|.+
T Consensus 506 yYFatas~D~tArLWs~d~-----~~PlR-ifaghl---sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G- 575 (707)
T KOG0263|consen 506 YYFATASHDQTARLWSTDH-----NKPLR-IFAGHL---SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG- 575 (707)
T ss_pred eEEEecCCCceeeeeeccc-----CCchh-hhcccc---cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-
Confidence 9999999999999999887 46677 777887 799999999999999995 899999999999999999976
Q ss_pred CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcE
Q 003871 678 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV 757 (790)
Q Consensus 678 ~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i 757 (790)
|..+|.+++|||+|++|++|++||.|.+||+.+|+++..+. || .+.|+ ++.|+. +|..||+||.|.+|
T Consensus 576 -H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~H-t~ti~--SlsFS~-dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 576 -HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GH-TGTIY--SLSFSR-DGNVLASGGADNSV 643 (707)
T ss_pred -CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cc-cCcee--EEEEec-CCCEEEecCCCCeE
Confidence 79999999999999999999999999999999999998887 67 66777 999999 89999999999999
Q ss_pred EEEecCCCccc
Q 003871 758 HVIEPLESEVE 768 (790)
Q Consensus 758 ~iW~~~~~~~~ 768 (790)
++||+......
T Consensus 644 ~lWD~~~~~~~ 654 (707)
T KOG0263|consen 644 RLWDLTKVIEL 654 (707)
T ss_pred EEEEchhhccc
Confidence 99999765433
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=256.43 Aligned_cols=285 Identities=15% Similarity=0.214 Sum_probs=234.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSREST-SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVR 446 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~d-g~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~ 446 (790)
+.+++|.+.+ +.++|+ |- |..| ||++.|+.|+||+... .++-.|+.. +. .+|+..|++
T Consensus 8 ~~~~gh~~r~-------W~~awh-------p~~g~il----Ascg~Dk~vriw~~~~-~~s~~ck~v-ld-~~hkrsVRs 66 (312)
T KOG0645|consen 8 QKLSGHKDRV-------WSVAWH-------PGKGVIL----ASCGTDKAVRIWSTSS-GDSWTCKTV-LD-DGHKRSVRS 66 (312)
T ss_pred EeecCCCCcE-------EEEEec-------cCCceEE----EeecCCceEEEEecCC-CCcEEEEEe-cc-ccchheeee
Confidence 7788999998 999998 76 7888 9999999999999974 223344442 22 489999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-
Q 003871 447 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS- 523 (790)
Q Consensus 447 l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s- 523 (790)
++|+|.|++|++++.|.++.||.-..+. ..-....++|...|.|++|+ |++||+++
T Consensus 67 vAwsp~g~~La~aSFD~t~~Iw~k~~~e---------------------fecv~~lEGHEnEVK~Vaws~sG~~LATCSR 125 (312)
T KOG0645|consen 67 VAWSPHGRYLASASFDATVVIWKKEDGE---------------------FECVATLEGHENEVKCVAWSASGNYLATCSR 125 (312)
T ss_pred eeecCCCcEEEEeeccceEEEeecCCCc---------------------eeEEeeeeccccceeEEEEcCCCCEEEEeeC
Confidence 9999999999999999999999644322 11222346999999999999 99999999
Q ss_pred CCeEEEEECCC---CcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC---ceEEEEcCCCCCEEEEEEeC
Q 003871 524 GGKISIFSLET---FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQNRITCLAYSL 596 (790)
Q Consensus 524 dg~I~vwd~~~---~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~---~~~~~l~~h~~~v~~l~~sp 596 (790)
|..|.+|.+.. .++...+++|...|..+.|+|.. +|++++.|.+|++|+-..+ .++.++.+|...|.+++|+|
T Consensus 126 DKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~ 205 (312)
T KOG0645|consen 126 DKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN 205 (312)
T ss_pred CCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC
Confidence 99999999974 36788899999999999999998 9999999999999987622 57889999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCc------
Q 003871 597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN------ 669 (790)
Q Consensus 597 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~------ 669 (790)
.|..|+++++|++++||-..+ .++.-|. ..+..++|. + ..|++ |.|+.|++|.-...-
T Consensus 206 ~G~rl~s~sdD~tv~Iw~~~~----------~~~~~~s---r~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~ 270 (312)
T KOG0645|consen 206 IGSRLVSCSDDGTVSIWRLYT----------DLSGMHS---RALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWN 270 (312)
T ss_pred CCceEEEecCCcceEeeeecc----------Ccchhcc---cceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHH
Confidence 999999999999999998764 1333444 588899998 4 46777 599999999765421
Q ss_pred eeeeecCCCCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECC
Q 003871 670 HTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 670 ~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs~dg~i~vwd~~ 710 (790)
.+... ...|...|++++|.|. .+.|++|+.||.|++|.+.
T Consensus 271 l~~~~-~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 271 LLAKK-EGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred HHHhh-hcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 11111 2347889999999995 6789999999999999874
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=273.56 Aligned_cols=284 Identities=19% Similarity=0.277 Sum_probs=250.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
..+.||..+| +.+-|. |+-... ++++.|++|++||.. ++++.. .+ .||.+.|..+
T Consensus 102 ~~l~g~r~~v-------t~v~~h-------p~~~~v----~~as~d~tikv~D~~----tg~~e~-~L--rGHt~sv~di 156 (406)
T KOG0295|consen 102 QKLAGHRSSV-------TRVIFH-------PSEALV----VSASEDATIKVFDTE----TGELER-SL--RGHTDSVFDI 156 (406)
T ss_pred hhhhccccce-------eeeeec-------cCceEE----EEecCCceEEEEEcc----chhhhh-hh--hccccceeEE
Confidence 6678899999 999998 887777 999999999999997 566643 22 5899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-C
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 524 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-d 524 (790)
+|+..|+++++++.|-.+.+||.+.... +++. ..+|...|.+++|- |.++++++ |
T Consensus 157 ~~~a~Gk~l~tcSsDl~~~LWd~~~~~~--------------------c~ks--~~gh~h~vS~V~f~P~gd~ilS~srD 214 (406)
T KOG0295|consen 157 SFDASGKYLATCSSDLSAKLWDFDTFFR--------------------CIKS--LIGHEHGVSSVFFLPLGDHILSCSRD 214 (406)
T ss_pred EEecCccEEEecCCccchhheeHHHHHH--------------------HHHH--hcCcccceeeEEEEecCCeeeecccc
Confidence 9999999999999999999999875211 2221 22799999999999 99999999 9
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCC------
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS------ 597 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd------ 597 (790)
.+|+.|++.+|-++.++.+|...|..++.+.|| .+|+++.|.++++|-+.++++...+++|..+|.+++|.|.
T Consensus 215 ~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i 294 (406)
T KOG0295|consen 215 NTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSI 294 (406)
T ss_pred cceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcch
Confidence 999999999999999999999999999999999 9999999999999999999998899999999999999663
Q ss_pred ----C-----CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCC
Q 003871 598 ----L-----NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (790)
Q Consensus 598 ----g-----~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~ 667 (790)
| +++.+++.|++|++||+.++. .+- ...+|. ..|..++|+|.|+||+++ .|+++++||+++
T Consensus 295 ~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-----cL~-tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 295 SEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-----CLF-TLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred hhccCCCCCccEEEeecccceEEEEeccCCe-----EEE-EEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 2 489999999999999999964 344 334676 699999999999999995 899999999999
Q ss_pred CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 003871 668 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 668 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~ 709 (790)
+++..++.. |...++++.|..+..++++|+-|.++++|.-
T Consensus 366 ~~cmk~~~a--h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 366 LQCMKTLEA--HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeeeccCC--CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999864 7889999999999999999999999999974
No 31
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=6.1e-33 Score=295.46 Aligned_cols=398 Identities=15% Similarity=0.133 Sum_probs=307.2
Q ss_pred ccccCccccchhhhhhhhccCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCC
Q 003871 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (790)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~ 379 (790)
|.+.+||+.+++.++++.++...++ ++.-+|- ..+|+|. ++|++.++.+ .+++.-.+.|
T Consensus 182 G~lql~Nvrt~K~v~~f~~~~s~IT--~ieqsPaLDVVaiG~~~G~Vi--ifNlK~dkil--------~sFk~d~g~V-- 247 (910)
T KOG1539|consen 182 GRLQLWNVRTGKVVYTFQEFFSRIT--AIEQSPALDVVAIGLENGTVI--IFNLKFDKIL--------MSFKQDWGRV-- 247 (910)
T ss_pred CcEEEEEeccCcEEEEeccccccee--EeccCCcceEEEEeccCceEE--EEEcccCcEE--------EEEEccccce--
Confidence 9999999999999999999998888 9999997 7899999 9999999987 6776445888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEE
Q 003871 380 GDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL 459 (790)
Q Consensus 380 ~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~ 459 (790)
++++|. -||.++ +|+|+..|.+.+||++. ...+.... ..|.+.|....|-|....++++
T Consensus 248 -----tslSFr-------tDG~p~---las~~~~G~m~~wDLe~----kkl~~v~~--nah~~sv~~~~fl~~epVl~ta 306 (910)
T KOG1539|consen 248 -----TSLSFR-------TDGNPL---LASGRSNGDMAFWDLEK----KKLINVTR--NAHYGSVTGATFLPGEPVLVTA 306 (910)
T ss_pred -----eEEEec-------cCCCee---EEeccCCceEEEEEcCC----Ceeeeeee--ccccCCcccceecCCCceEeec
Confidence 999998 889887 68999999999999984 33332221 3688999999999999999999
Q ss_pred eCCCcEEEEecCCCCc-------cccccccccccccccCCCceeeee-------------------------c-------
Q 003871 460 TQTATHKLWKWQSNKQ-------SLEEENVNMESQLYQPSSKLVMTN-------------------------D------- 500 (790)
Q Consensus 460 ~~dg~i~vw~~~~~~~-------~~g~~~~~~~~~i~~~~~~~~~~~-------------------------~------- 500 (790)
+.|+.+++|-.+++.- ..|+......++.+......++.. .
T Consensus 307 ~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~ 386 (910)
T KOG1539|consen 307 GADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVN 386 (910)
T ss_pred cCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccc
Confidence 9999999997764433 223333222222221111110000 0
Q ss_pred ---ccCCCCCCeEEEEec-------CcEEEEec-CCeEEEEECCCCcE-EEEEc-----CCCCCeEEEEEcCCC-eEEEE
Q 003871 501 ---IAADPKDSISCFALR-------GSHLFSAS-GGKISIFSLETFQT-LATFA-----NPPPIATYFILLPQD-LFAFG 562 (790)
Q Consensus 501 ---~~~~~~~~V~~l~~s-------~~~l~s~s-dg~I~vwd~~~~~~-~~~~~-----~~~~~v~~l~~s~~g-~l~sg 562 (790)
...-.-.+|..+++. .+.+++.- +..++.|+..+... ...+. .....+++++.++.| +.+.|
T Consensus 387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG 466 (910)
T KOG1539|consen 387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIG 466 (910)
T ss_pred ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEe
Confidence 000012345555555 22333322 46677777765443 12222 223578999999999 99999
Q ss_pred eCCCcEEEEeCCCCceEEEE---cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCC
Q 003871 563 FDDSSILVHCPCTKKTKAKL---KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 639 (790)
Q Consensus 563 s~dg~I~iwd~~~~~~~~~l---~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~ 639 (790)
+..|.|-+|++++|-....+ ..|.++|++++...-++.+++++.+|.+.+||...... +.++.-+ ..
T Consensus 467 ~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-----~~~l~l~-----~~ 536 (910)
T KOG1539|consen 467 YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-----KKSLRLG-----SS 536 (910)
T ss_pred ccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce-----eeeeccC-----CC
Confidence 99999999999999888888 47999999999998889999999999999999998442 3323333 46
Q ss_pred eEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 003871 640 VNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 640 v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~ 718 (790)
+.++..+.....++++ .|-.|.++|..+.+.++.+.+ |+..|++++|||||+||++++.|++|++||+.++.++..+
T Consensus 537 ~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g--h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 537 ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG--HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc--cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 8899999888888884 888999999999999999975 7999999999999999999999999999999999998877
Q ss_pred ccccccCCCCcccccceEEEEEecCCCCEEEEEeCC-CcEEEEecC
Q 003871 719 NLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPL 763 (790)
Q Consensus 719 ~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D-g~i~iW~~~ 763 (790)
.. +.+ +++++|+| +|.+|||+..| ..|++|.-.
T Consensus 615 ~v---------d~~--~~sls~SP-ngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 615 LV---------DSP--CTSLSFSP-NGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ec---------CCc--ceeeEECC-CCCEEEEEEecCceEEEEEch
Confidence 53 223 44999999 89999999998 689999743
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.6e-34 Score=282.87 Aligned_cols=275 Identities=17% Similarity=0.191 Sum_probs=237.3
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
..+.|. |+|+.| ++|+..|.+.+|+... -...+.+ +.|.++|.++.|+++|.++++|..+|.
T Consensus 100 ~~v~Wt-------PeGRRL----ltgs~SGEFtLWNg~~-----fnFEtil--QaHDs~Vr~m~ws~~g~wmiSgD~gG~ 161 (464)
T KOG0284|consen 100 NVVRWT-------PEGRRL----LTGSQSGEFTLWNGTS-----FNFETIL--QAHDSPVRTMKWSHNGTWMISGDKGGM 161 (464)
T ss_pred eeEEEc-------CCCcee----EeecccccEEEecCce-----eeHHHHh--hhhcccceeEEEccCCCEEEEcCCCce
Confidence 889999 999999 9999999999999852 1111111 479999999999999999999999999
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEE
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 541 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~ 541 (790)
|++|+..-+.. . .+...|...|.+++|+ +..+++++ ||+|+|||....+..+.+
T Consensus 162 iKyWqpnmnnV---------------------k--~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL 218 (464)
T KOG0284|consen 162 IKYWQPNMNNV---------------------K--IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL 218 (464)
T ss_pred EEecccchhhh---------------------H--HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee
Confidence 99998653211 0 0112466999999999 88899999 899999999999888899
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q 003871 542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 620 (790)
Q Consensus 542 ~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 620 (790)
.+|.-.|.+++|+|.. .+++|+.|..|++||.++|.++.++.+|+..|..+.|+|++++|+++|.|..++++|+++
T Consensus 219 ~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~--- 295 (464)
T KOG0284|consen 219 RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT--- 295 (464)
T ss_pred ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH---
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999996
Q ss_pred eeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE--EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE
Q 003871 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698 (790)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~--~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 698 (790)
.+.+. ...+|. ..+++++|+|-..-|++ |.||.|..|.+...+++..+.. .|...|++++|+|=|..|++|
T Consensus 296 --mkEl~-~~r~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tg 368 (464)
T KOG0284|consen 296 --MKELF-TYRGHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATG 368 (464)
T ss_pred --hHHHH-Hhhcch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeec
Confidence 23444 445666 69999999997655555 4999999999986667666653 589999999999999999999
Q ss_pred EcCCeEEEEECC
Q 003871 699 CKSGHVKVFDTS 710 (790)
Q Consensus 699 s~dg~i~vwd~~ 710 (790)
+.|.++++|...
T Consensus 369 snd~t~rfw~r~ 380 (464)
T KOG0284|consen 369 SNDRTVRFWTRN 380 (464)
T ss_pred CCCcceeeeccC
Confidence 999999999754
No 33
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.3e-34 Score=285.84 Aligned_cols=283 Identities=16% Similarity=0.225 Sum_probs=239.3
Q ss_pred CCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-
Q 003871 438 NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~sp-dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s- 515 (790)
+||+..|.++.|.| .+..|++++.|+.|+||++-. ++.+++... +|..+|.+++|+
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~--------------------~~~~lrtf~--gH~k~Vrd~~~s~ 268 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD--------------------DRRCLRTFK--GHRKPVRDASFNN 268 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEec--------------------Ccceehhhh--cchhhhhhhhccc
Confidence 58999999999999 889999999999999999643 334555444 899999999999
Q ss_pred -CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEE
Q 003871 516 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 591 (790)
Q Consensus 516 -~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~ 591 (790)
|..+.+++ |+.|++||+++|++...+. ....++|+.|+|++ .+++|+.|+.|+.||+++++.++.+..|-+.|..
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILD 347 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheee
Confidence 89999999 9999999999999999986 34557999999999 8999999999999999999999999989999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCC--
Q 003871 592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-- 668 (790)
Q Consensus 592 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~-- 668 (790)
+.|-++|+++++.++|++++||+.+.+-.+. .+. -... ....++..+|++.++++ +.|+.|.++.+...
T Consensus 348 i~F~~~g~rFissSDdks~riWe~~~~v~ik--~i~-~~~~-----hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 348 ITFVDEGRRFISSSDDKSVRIWENRIPVPIK--NIA-DPEM-----HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred eEEccCCceEeeeccCccEEEEEcCCCccch--hhc-chhh-----ccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 9999999999999999999999998743221 111 1222 35778999999999999 79999999986532
Q ss_pred -ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCE
Q 003871 669 -NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 747 (790)
Q Consensus 669 -~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~ 747 (790)
...+.+.++.-.+.-..+.|||||++|++|+.||.+.+||.++.+++..+.. | ... ++.+.|||.....
T Consensus 420 ~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka-------h-~~~--ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 420 LNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA-------H-DQP--CIGVDWHPVEPSK 489 (503)
T ss_pred cCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc-------C-Ccc--eEEEEecCCCcce
Confidence 1223454433356678899999999999999999999999999999988873 3 344 4499999987889
Q ss_pred EEEEeCCCcEEEEe
Q 003871 748 IALGLTNGRVHVIE 761 (790)
Q Consensus 748 las~s~Dg~i~iW~ 761 (790)
+||||.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-32 Score=265.46 Aligned_cols=287 Identities=16% Similarity=0.218 Sum_probs=245.8
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.+|.+.|.|+++.|-+.++++|+.|++++|||+.++.. ... ..+|-..|..++++
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L---------------------klt--ltGhi~~vr~vavS~r 204 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL---------------------KLT--LTGHIETVRGVAVSKR 204 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE---------------------EEe--ecchhheeeeeeeccc
Confidence 48999999999999999999999999999999887543 211 23799999999999
Q ss_pred CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEE
Q 003871 516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 593 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~ 593 (790)
-.|+++++ |+.|+.||++..+.++.+.+|-..|.|++.+|.- .|++|+.|.++++||+++...+..+.||..+|..+.
T Consensus 205 HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 205 HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM 284 (460)
T ss_pred CceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence 78999999 8999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeee
Q 003871 594 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 673 (790)
Q Consensus 594 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~ 673 (790)
+.|-...+++||.|++|++||++.|+. .. ....|. ..+.+++.+|....+|++....|+-|++..|..+..
T Consensus 285 ~~~~dpqvit~S~D~tvrlWDl~agkt-----~~-tlt~hk---ksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 285 CQPTDPQVITGSHDSTVRLWDLRAGKT-----MI-TLTHHK---KSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN 355 (460)
T ss_pred eecCCCceEEecCCceEEEeeeccCce-----eE-eeeccc---ceeeEEecCCchhhhhccCCccceeccCCccchhhc
Confidence 999777899999999999999998653 22 223454 589999999999888888777899999999999888
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCc--ccccceEEEEEecCCCCEEEEE
Q 003871 674 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI--SLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 674 ~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~--~~~v~~~~v~~sp~d~~~las~ 751 (790)
+.+ |..-|.+++...|| ++++|+++|.+.+||.++|...+..... ..+|.- ...|+ +.+|.. .|..|+||
T Consensus 356 lsg--h~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~--vqpGSl~sEagI~--as~fDk-tg~rlit~ 427 (460)
T KOG0285|consen 356 LSG--HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI--VQPGSLESEAGIF--ASCFDK-TGSRLITG 427 (460)
T ss_pred ccc--ccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccccc--ccCCcccccccee--EEeecc-cCceEEec
Confidence 754 78899999998776 7889999999999999998655443211 111321 23445 999999 79999999
Q ss_pred eCCCcEEEEecCC
Q 003871 752 LTNGRVHVIEPLE 764 (790)
Q Consensus 752 s~Dg~i~iW~~~~ 764 (790)
..|.+|++|.-.+
T Consensus 428 eadKtIk~~keDe 440 (460)
T KOG0285|consen 428 EADKTIKMYKEDE 440 (460)
T ss_pred cCCcceEEEeccc
Confidence 9999999997543
No 35
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-31 Score=295.86 Aligned_cols=288 Identities=25% Similarity=0.329 Sum_probs=243.7
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--Cc
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 517 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~ 517 (790)
|...|.++.|+|+|+++++++.++.+++|+...... ..... ..+|...|.+++|+ +.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------~~~~~--l~~h~~~v~~~~fs~d~~ 216 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------NLLRE--LSGHTRGVSDVAFSPDGS 216 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------hhhcc--ccccccceeeeEECCCCc
Confidence 478899999999999999999999999999854320 01111 13799999999999 88
Q ss_pred EEEEec-CCeEEEEEC-CCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEE
Q 003871 518 HLFSAS-GGKISIFSL-ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 594 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~-~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~ 594 (790)
++++++ |++|++||+ ..+..++++.+|...|++++|+|+| .+++|+.|++|++||++++++...+.+|.+.|++++|
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 999999 999999999 5668999999999999999999999 9999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeee
Q 003871 595 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ 673 (790)
Q Consensus 595 spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~ 673 (790)
++++++|++++.|+.|++||+.++... .+. ...++.... +++++.|+|++.+++++ .|+.+++||+..+..+..
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~-~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKL---CLK-LLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCcee---eee-cccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 999999999999999999999997633 223 222333211 68999999999999996 778999999999999998
Q ss_pred ecCCCCC-CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEe
Q 003871 674 LVPDKMD-LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 752 (790)
Q Consensus 674 ~~~~~h~-~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s 752 (790)
+.++... ..+.+...++.++++++|+.|+.|++||+.++..+..+. ||....+. .++++| ..+++++++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~~~--~~~~~~-~~~~~~s~s 441 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAAVS--DLSSHP-TENLIASSS 441 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCcee--ccccCC-CcCeeeecC
Confidence 8764322 245556667899999999999999999999988888776 55333444 899999 789999998
Q ss_pred --CCCcEEEEecC
Q 003871 753 --TNGRVHVIEPL 763 (790)
Q Consensus 753 --~Dg~i~iW~~~ 763 (790)
.|+.+++|...
T Consensus 442 ~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 442 FEGDGLIRLWKYD 454 (456)
T ss_pred cCCCceEEEecCC
Confidence 78999999864
No 36
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.5e-32 Score=256.83 Aligned_cols=289 Identities=14% Similarity=0.150 Sum_probs=240.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
..+.||.+.| ..+.|+ |||..+ |||+.|..|.+|++.+ .|..+-.. .+|++.|..+
T Consensus 41 m~l~gh~geI-------~~~~F~-------P~gs~~----aSgG~Dr~I~LWnv~g-----dceN~~~l-kgHsgAVM~l 96 (338)
T KOG0265|consen 41 MLLPGHKGEI-------YTIKFH-------PDGSCF----ASGGSDRAIVLWNVYG-----DCENFWVL-KGHSGAVMEL 96 (338)
T ss_pred hhcCCCcceE-------EEEEEC-------CCCCeE----eecCCcceEEEEeccc-----cccceeee-ccccceeEee
Confidence 6678999999 999999 999999 9999999999999863 33221111 3799999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcE-EEEec-
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH-LFSAS- 523 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~-l~s~s- 523 (790)
.|++|++.++++|.|.+++.||+++++. ..+ ..+|..-|+++..+ |.. +.+++
T Consensus 97 ~~~~d~s~i~S~gtDk~v~~wD~~tG~~--------------------~rk---~k~h~~~vNs~~p~rrg~~lv~Sgsd 153 (338)
T KOG0265|consen 97 HGMRDGSHILSCGTDKTVRGWDAETGKR--------------------IRK---HKGHTSFVNSLDPSRRGPQLVCSGSD 153 (338)
T ss_pred eeccCCCEEEEecCCceEEEEeccccee--------------------eeh---hccccceeeecCccccCCeEEEecCC
Confidence 9999999999999999999999887654 111 23688889988877 554 55666
Q ss_pred CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEE
Q 003871 524 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV 602 (790)
Q Consensus 524 dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~ 602 (790)
|+++++||+++...++++. ....++++.|..++ .+.+|+-|+.|++||++.+.....++||.++|+.+..+|+|.++.
T Consensus 154 D~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ll 232 (338)
T KOG0265|consen 154 DGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLL 232 (338)
T ss_pred CceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccc
Confidence 8999999999888888775 35578999999999 999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCceeeceeeeeeccCCCC-CCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCC
Q 003871 603 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP-ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD 680 (790)
Q Consensus 603 s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~-~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~ 680 (790)
+-+.|.++++||++..... .+.+. +..+|.. -.......+|+|+++.+.++ .|..+++||......+..+.+ |.
T Consensus 233 snsMd~tvrvwd~rp~~p~-~R~v~-if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG--h~ 308 (338)
T KOG0265|consen 233 SNSMDNTVRVWDVRPFAPS-QRCVK-IFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG--HY 308 (338)
T ss_pred cccccceEEEEEecccCCC-CceEE-EeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC--cc
Confidence 9999999999999864321 12244 3333320 01234568999999999985 899999999988888887754 79
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 681 LPITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 681 ~~v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
+.|.+++|+|...+|.+++.|.+|++=+
T Consensus 309 gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 309 GSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eeEEEeeecCCCcEEEEeccCceeEeec
Confidence 9999999999999999999999998744
No 37
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-33 Score=274.82 Aligned_cols=418 Identities=18% Similarity=0.217 Sum_probs=291.0
Q ss_pred cchhhhHhhhhhcccchhHHHHhhhhccccc---ccccchhhhhhccccccccccccCcceeccccccccccccccceee
Q 003871 195 KEELIYLIHQFLNEEEFKETLHKLEQETRVF---FDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKY 271 (790)
Q Consensus 195 ~~~~~~~~~q~l~~~~~~~~~~~l~~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 271 (790)
+.|+++++.|+|+++||..+...+|.|+|.. .+++.+...++.|+|...+..+.....-++..+..++| ...+|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~f-Lv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMF-LVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhhhHHHHH-HHHHHHH
Confidence 5689999999999999999999999999976 45889999999999999988877444344556666665 7888888
Q ss_pred eeeecCC---Ccc-------cccccc---cchhhhhc--------h--------------hhhhcCccccccccCccccc
Q 003871 272 LEAVDRQ---QKL-------PSDFAE---RAHLFDDF--------K--------------VLVERNPMLQDKLKFPSMDK 316 (790)
Q Consensus 272 ~~~~~~~---~~l-------~s~~~d---~v~l~~~~--------~--------------~~~~~~~~la~~i~iwd~~~ 316 (790)
+|.+.-+ ..+ +.-... -..+|+.. + -+.++++|+...|.+ +.
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~ill---P~ 172 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLRKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNILL---PK 172 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhhhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhcC---Ch
Confidence 8877322 000 000000 01222200 0 011111222222222 22
Q ss_pred hhhhhhhhccCCCccccccccCCCCCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 317 SRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSR 396 (790)
Q Consensus 317 ~~~~~~l~~h~~~v~v~~i~fspd~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~ 396 (790)
+++.+.++..-..- .|..+. |..- .++.+-
T Consensus 173 rRLehLl~qAv~~Q-----------~d~cvy-------------------------hnsl--------dsvsll------ 202 (519)
T KOG0293|consen 173 RRLEHLLEQAVKYQ-----------RDSCVY-------------------------HNSL--------DSVSLL------ 202 (519)
T ss_pred HHHHHHHHHHHHHH-----------HhHhHH-------------------------hccc--------chhhhh------
Confidence 23322222111100 011111 1110 122222
Q ss_pred CCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 003871 397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 476 (790)
Q Consensus 397 s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~ 476 (790)
.| +. ++. .+ + +.+..++. +.|.+.|+-+.||++|+|||+++.|.+..+|.+..
T Consensus 203 -~D--h~------c~~-~q-----i-----p~qt~qil---~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~---- 255 (519)
T KOG0293|consen 203 -SD--HF------CGR-LQ-----I-----PSQTWQIL---QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY---- 255 (519)
T ss_pred -hh--cc------cCc-cc-----C-----CchhhhhH---hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEec----
Confidence 11 00 000 00 0 11111111 36999999999999999999999999999997532
Q ss_pred ccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCC
Q 003871 477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQ 556 (790)
Q Consensus 477 ~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~ 556 (790)
|.. -+..+++.+|..+|..+.||||
T Consensus 256 ------------------------------------------------------d~~-~kl~~tlvgh~~~V~yi~wSPD 280 (519)
T KOG0293|consen 256 ------------------------------------------------------DVH-FKLKKTLVGHSQPVSYIMWSPD 280 (519)
T ss_pred ------------------------------------------------------Ccc-eeeeeeeecccCceEEEEECCC
Confidence 111 3556788899999999999999
Q ss_pred C-eEEEEeCCCcEEEEeCCCCceEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCC
Q 003871 557 D-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 634 (790)
Q Consensus 557 g-~l~sgs~dg~I~iwd~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~ 634 (790)
+ ++++++.|..+.+||+.+|.....+. +|...+.+++|.|||..+++|+.|+++..||++.......+-+ ..
T Consensus 281 dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv------r~ 354 (519)
T KOG0293|consen 281 DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV------RD 354 (519)
T ss_pred CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc------cc
Confidence 9 99999999999999999998877764 3567899999999999999999999999999997442222222 22
Q ss_pred CCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003871 635 PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 635 ~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~ 713 (790)
..|.+++.++||+++++ +.|..|++|+.++...+..+.. ..+|++++.|.||+++++.-.+..+++||++..+
T Consensus 355 ---~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise---~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 355 ---PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE---EQPITSFSISKDGKLALVNLQDQEIHLWDLEENK 428 (519)
T ss_pred ---ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc---cCceeEEEEcCCCcEEEEEcccCeeEEeecchhh
Confidence 36999999999999988 6999999999987766655532 6789999999999999999999999999999877
Q ss_pred EEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccc
Q 003871 714 LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 714 ~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
++..+. ||.. .-+++.-+|...+..++|+||+|+.|+||+..+|+..
T Consensus 429 lv~kY~-------Ghkq-~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll 475 (519)
T KOG0293|consen 429 LVRKYF-------GHKQ-GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL 475 (519)
T ss_pred HHHHhh-------cccc-cceEEEeccCCCCcceEEecCCCceEEEEEccCCcee
Confidence 777766 6633 4456677887756689999999999999999988755
No 38
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8.3e-32 Score=262.00 Aligned_cols=319 Identities=12% Similarity=0.091 Sum_probs=265.9
Q ss_pred hhhhhhccCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 319 LLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFND 391 (790)
Q Consensus 319 ~~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~ 391 (790)
.+.+|..|++.+. +++.+|+ +.|.... +|+..+|... ..+.||.+.| +++.||
T Consensus 56 S~~tF~~H~~svF--avsl~P~~~l~aTGGgDD~Af--lW~~~~ge~~--------~eltgHKDSV-------t~~~Fs- 115 (399)
T KOG0296|consen 56 SLVTFDKHTDSVF--AVSLHPNNNLVATGGGDDLAF--LWDISTGEFA--------GELTGHKDSV-------TCCSFS- 115 (399)
T ss_pred ceeehhhcCCceE--EEEeCCCCceEEecCCCceEE--EEEccCCcce--------eEecCCCCce-------EEEEEc-
Confidence 4678889999988 9999998 7888888 9999999976 8999999999 999999
Q ss_pred CCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 003871 392 NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 471 (790)
Q Consensus 392 ~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~ 471 (790)
.||.+| |||+-+|.|+||+... +..+. .+. ..-+.|.-+.|+|.+..|++|+.||.+.+|.+.
T Consensus 116 ------hdgtlL----ATGdmsG~v~v~~~st----g~~~~-~~~--~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip 178 (399)
T KOG0296|consen 116 ------HDGTLL----ATGDMSGKVLVFKVST----GGEQW-KLD--QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP 178 (399)
T ss_pred ------cCceEE----EecCCCccEEEEEccc----CceEE-Eee--cccCceEEEEecccccEEEeecCCCcEEEEECC
Confidence 999999 9999999999999974 33322 221 235778899999999999999999999999987
Q ss_pred CCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCC-CCC
Q 003871 472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP-PPI 547 (790)
Q Consensus 472 ~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~-~~~ 547 (790)
+... .+. ..+|+.++++=.|. |+.++++. ||+|++||..+++++.++.+. ...
T Consensus 179 ~~~~---------------------~kv--~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~ 235 (399)
T KOG0296|consen 179 SQAL---------------------CKV--MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLE 235 (399)
T ss_pred Ccce---------------------eeE--ecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCc
Confidence 6322 121 12799999999999 99999999 899999999999999888643 335
Q ss_pred eEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEc--------CCCCCEEEEEEeC---CCCEEEEEeCCCcEEEEEC
Q 003871 548 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--------GHQNRITCLAYSL---SLNVLVSSGADAQLCVWDA 615 (790)
Q Consensus 548 v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~--------~h~~~v~~l~~sp---dg~~l~s~s~dg~I~vwd~ 615 (790)
..++.++..+ .++.|+.++.+++.+..+|+.+.... .+...+.++.+.| .-.+.|+|+-||+|.|||+
T Consensus 236 ~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~ 315 (399)
T KOG0296|consen 236 LPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL 315 (399)
T ss_pred CCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEec
Confidence 6788999999 99999999999999999998877765 3444455555544 5567899999999999999
Q ss_pred CCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCE
Q 003871 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC 694 (790)
Q Consensus 616 ~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 694 (790)
...+ ++ ..-.|. .+|+.+.|-+ ..+|++ +.+|.|+.||.++|+++.++.+ |...|.+++++|++++
T Consensus 316 a~~~------~R-~~c~he---~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G--H~~~Il~f~ls~~~~~ 382 (399)
T KOG0296|consen 316 AAST------LR-HICEHE---DGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG--HQMGILDFALSPQKRL 382 (399)
T ss_pred ccch------hh-eeccCC---CceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec--CchheeEEEEcCCCcE
Confidence 8843 22 112233 5899999999 556666 6999999999999999999975 7999999999999999
Q ss_pred EEEEEcCCeEEEEECC
Q 003871 695 IYVSCKSGHVKVFDTS 710 (790)
Q Consensus 695 l~sgs~dg~i~vwd~~ 710 (790)
++++|.|++.+||+..
T Consensus 383 vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 383 VVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEecCCCeEEEEecC
Confidence 9999999999999864
No 39
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.6e-32 Score=292.48 Aligned_cols=265 Identities=16% Similarity=0.211 Sum_probs=223.0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
+|..|+ +|++.+ |.|-.|..|++|.+. +...++++ +...+. .+=+.+.|-.
T Consensus 382 ~ca~fS-------ddssml----A~Gf~dS~i~~~Sl~----p~kl~~lk-----~~~~l~---------~~d~~sad~~ 432 (707)
T KOG0263|consen 382 TCAEFS-------DDSSML----ACGFVDSSVRVWSLT----PKKLKKLK-----DASDLS---------NIDTESADVD 432 (707)
T ss_pred eeEeec-------CCcchh----hccccccEEEEEecc----hhhhcccc-----chhhhc---------cccccccchh
Confidence 899998 999988 999999999999996 33444432 111111 1112233322
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEE
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 541 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~ 541 (790)
+.+-|-.. +..... ..+|.++|+.+.|+ .++|++++ |+++++|.+.+..++..+
T Consensus 433 ~~~~D~~~---------------------~~~~~~--L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y 489 (707)
T KOG0263|consen 433 VDMLDDDS---------------------SGTSRT--LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY 489 (707)
T ss_pred hhhccccC---------------------CceeEE--eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEe
Confidence 33322221 111111 12899999999999 88999999 899999999999999999
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q 003871 542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 620 (790)
Q Consensus 542 ~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 620 (790)
++|..+|+++.|+|-| ++|+|+.|++.++|......+.+.+.+|.+.|.|+.|+|+..++++||.|.+|++||+.+|..
T Consensus 490 ~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~ 569 (707)
T KOG0263|consen 490 KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS 569 (707)
T ss_pred cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999653
Q ss_pred eeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 003871 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 699 (790)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 699 (790)
++ +..||. ++|++++|||+|++|++| .||.|.+||+.+++.+..+.+ |.+.|.++.||.||..||+||
T Consensus 570 -----VR-iF~GH~---~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 570 -----VR-IFTGHK---GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGG 638 (707)
T ss_pred -----EE-EecCCC---CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc--ccCceeEEEEecCCCEEEecC
Confidence 44 557888 899999999999999996 899999999999999999976 699999999999999999999
Q ss_pred cCCeEEEEECCCC
Q 003871 700 KSGHVKVFDTSTL 712 (790)
Q Consensus 700 ~dg~i~vwd~~~~ 712 (790)
.|++|++||+..-
T Consensus 639 ~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 639 ADNSVRLWDLTKV 651 (707)
T ss_pred CCCeEEEEEchhh
Confidence 9999999998753
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-31 Score=272.53 Aligned_cols=278 Identities=14% Similarity=0.156 Sum_probs=235.9
Q ss_pred hhhhhccCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 320 LSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN 392 (790)
Q Consensus 320 ~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~ 392 (790)
..++..+.+.|. ++.|.|. -.+|.+. |||.++...+ +.+.-..-+| ++..|-
T Consensus 6 krk~~~rSdRVK--sVd~HPtePw~la~LynG~V~--IWnyetqtmV--------ksfeV~~~Pv-------Ra~kfi-- 64 (794)
T KOG0276|consen 6 KRKFQSRSDRVK--SVDFHPTEPWILAALYNGDVQ--IWNYETQTMV--------KSFEVSEVPV-------RAAKFI-- 64 (794)
T ss_pred hhHhhccCCcee--eeecCCCCceEEEeeecCeeE--EEecccceee--------eeeeecccch-------hhheee--
Confidence 345556778777 9999998 6788999 9999888877 7887777888 899998
Q ss_pred CCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 003871 393 NQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 472 (790)
Q Consensus 393 ~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~ 472 (790)
+--+++ ++|+.|..||||+.++ ..+++.+. .|.+-|.+++.+|...+++++|+|-+|++||++.
T Consensus 65 -----aRknWi----v~GsDD~~IrVfnynt---~ekV~~Fe----AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~ 128 (794)
T KOG0276|consen 65 -----ARKNWI----VTGSDDMQIRVFNYNT---GEKVKTFE----AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN 128 (794)
T ss_pred -----eccceE----EEecCCceEEEEeccc---ceeeEEee----ccccceeeeeecCCCCeEEecCCccEEEEeeccC
Confidence 667788 9999999999999984 34555544 7999999999999999999999999999999886
Q ss_pred CCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCe
Q 003871 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 548 (790)
Q Consensus 473 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v 548 (790)
. |. +.+ ..++|..-|.+++|+ .+.+++++ |++|++|.+....+..++++|..+|
T Consensus 129 ~---------------wa-----~~q--tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGV 186 (794)
T KOG0276|consen 129 E---------------WA-----CEQ--TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGV 186 (794)
T ss_pred c---------------ee-----eee--EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCc
Confidence 3 22 222 124899999999999 78999999 9999999999999999999999999
Q ss_pred EEEEEcCCC---eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeecee
Q 003871 549 TYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 625 (790)
Q Consensus 549 ~~l~~s~~g---~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~ 625 (790)
+|+.+-+.| ++++|++|.+|+|||.++..+++++.||...|+.+.|+|.-..+++|+.||++++|+..+.+....
T Consensus 187 N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t-- 264 (794)
T KOG0276|consen 187 NCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT-- 264 (794)
T ss_pred ceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhh--
Confidence 999998887 999999999999999999999999999999999999999999999999999999999998543322
Q ss_pred eeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEEC
Q 003871 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 665 (790)
Q Consensus 626 l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~ 665 (790)
+.-+. ..++|++-.+.++.+++|.|....+..+
T Consensus 265 ---Ln~gl----eRvW~I~~~k~~~~i~vG~Deg~i~v~l 297 (794)
T KOG0276|consen 265 ---LNYGL----ERVWCIAAHKGDGKIAVGFDEGSVTVKL 297 (794)
T ss_pred ---hhcCC----ceEEEEeecCCCCeEEEeccCCcEEEEc
Confidence 22222 4799999988888888886554444443
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.8e-30 Score=266.41 Aligned_cols=278 Identities=23% Similarity=0.344 Sum_probs=238.8
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
+|.++|.+++|+|+++++++++.||.+.+|++.+... ... ...|...+..+.|+ +
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~--------------------~~~---~~~~~~~i~~~~~~~~~ 63 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--------------------LRT---LKGHTGPVRDVAASADG 63 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc--------------------EEE---EecCCcceeEEEECCCC
Confidence 6899999999999999999999999999999875422 111 12578888899999 6
Q ss_pred cEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEE
Q 003871 517 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 594 (790)
Q Consensus 517 ~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~ 594 (790)
+++++++ +|.|++|++.+++....+..|...+.++.|+|++ .+++++.||.|.+||+.+++....+..|...+.+++|
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 6888888 9999999999888888888898899999999999 8888888999999999989888889899999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeee
Q 003871 595 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ 673 (790)
Q Consensus 595 spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~ 673 (790)
+|+++++++++.|+.|++||+++++. +..+. .|. ..+.++.|+|+++.++++ .++.|++||+++++.+..
T Consensus 144 ~~~~~~l~~~~~~~~i~i~d~~~~~~-----~~~~~-~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 214 (289)
T cd00200 144 SPDGTFVASSSQDGTIKLWDLRTGKC-----VATLT-GHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214 (289)
T ss_pred cCcCCEEEEEcCCCcEEEEEcccccc-----ceeEe-cCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecc
Confidence 99999999888899999999987442 22122 343 589999999999888875 799999999998888877
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeC
Q 003871 674 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 753 (790)
Q Consensus 674 ~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~ 753 (790)
+.. |...+.+++|+|++.++++++.||.|++||+.+++....+. +| ...+. +++|+| ++.+|++++.
T Consensus 215 ~~~--~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-------~~-~~~i~--~~~~~~-~~~~l~~~~~ 281 (289)
T cd00200 215 LRG--HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-------GH-TNSVT--SLAWSP-DGKRLASGSA 281 (289)
T ss_pred hhh--cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-------cc-CCcEE--EEEECC-CCCEEEEecC
Confidence 743 57799999999999999998889999999999988877765 33 33555 999999 8999999999
Q ss_pred CCcEEEEe
Q 003871 754 NGRVHVIE 761 (790)
Q Consensus 754 Dg~i~iW~ 761 (790)
||.|++|+
T Consensus 282 d~~i~iw~ 289 (289)
T cd00200 282 DGTIRIWD 289 (289)
T ss_pred CCeEEecC
Confidence 99999996
No 42
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.6e-32 Score=250.34 Aligned_cols=294 Identities=16% Similarity=0.170 Sum_probs=247.7
Q ss_pred CCCCCceEEEEEcC---CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEe
Q 003871 438 NSFGGRVVRLIYSH---SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 514 (790)
Q Consensus 438 ~~h~~~V~~l~~sp---dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~ 514 (790)
+||+.+|..++||| +|-+|++++.|+.-.+-+-+ +|..+... ++|.+.|++.+.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~---------------------tgdwigtf--eghkgavw~~~l 67 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGD---------------------TGDWIGTF--EGHKGAVWSATL 67 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCC---------------------CCCcEEee--eccCcceeeeec
Confidence 68999999999985 89999999999876654433 34434332 389999999999
Q ss_pred c--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-eEEEEcCCCCCE
Q 003871 515 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRI 589 (790)
Q Consensus 515 s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~-~~~~l~~h~~~v 589 (790)
+ ...-++++ |=+-++||.-+|..+..|. |..-|.+++|+.|. .|++|+.+..+++||++..+ +...+.+|++.|
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~I 146 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI 146 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcc
Confidence 9 34456666 8899999999999998886 88889999999999 99999999999999998754 467889999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCc
Q 003871 590 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 669 (790)
Q Consensus 590 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~ 669 (790)
..+.|....+.++++++|++||+||.+++..... +... .+|+++..+++|++|.++..+.|.+||..+-.
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s-----L~~~-----s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS-----LEFN-----SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFG 216 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCcEEEE-----EecC-----CCCcceeeccCCCEEEEecCceeEEecccccc
Confidence 9999999888999999999999999999765433 2222 57999999999999999999999999999988
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEE
Q 003871 670 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 749 (790)
Q Consensus 670 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~la 749 (790)
+++.+.. ...|.+...+|+...+++|++|+.++.||..+|+.+..+. .||++ +|. |+.|+| ||...|
T Consensus 217 ~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n------kgh~g-pVh--cVrFSP-dGE~yA 283 (334)
T KOG0278|consen 217 LLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN------KGHFG-PVH--CVRFSP-DGELYA 283 (334)
T ss_pred ceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc------cCCCC-ceE--EEEECC-CCceee
Confidence 8888754 6779999999999999999999999999999999887752 27744 677 999999 899999
Q ss_pred EEeCCCcEEEEecCCCcc--ccccCCCCCCC
Q 003871 750 LGLTNGRVHVIEPLESEV--EWGKLPFTDSR 778 (790)
Q Consensus 750 s~s~Dg~i~iW~~~~~~~--~w~~~~~~~~~ 778 (790)
+||.||+|++|....++. .|.-..|.+.|
T Consensus 284 sGSEDGTirlWQt~~~~~~~~~~~~~~ed~~ 314 (334)
T KOG0278|consen 284 SGSEDGTIRLWQTTPGKTYGLWKCVKPEDDG 314 (334)
T ss_pred ccCCCceEEEEEecCCCchhhccccChhhhc
Confidence 999999999999887754 47665555544
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-30 Score=239.18 Aligned_cols=278 Identities=12% Similarity=0.111 Sum_probs=231.8
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
+|+++|.++.|+-||+|.++++.|.+|++|+... |.+++... +|...|..++.+ +
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r---------------------g~liktYs--ghG~EVlD~~~s~Dn 71 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR---------------------GALIKTYS--GHGHEVLDAALSSDN 71 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccc---------------------cceeeeec--CCCceeeeccccccc
Confidence 6899999999999999999999999999887554 44444333 799999999988 7
Q ss_pred cEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC--ceEEEEcCCCCCEEEE
Q 003871 517 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCL 592 (790)
Q Consensus 517 ~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~--~~~~~l~~h~~~v~~l 592 (790)
..+++|+ |..+.+||+.+|+..+++.+|.+.|+.++|+.+. .+++|+.|.++++||.++. ++++.+......|.++
T Consensus 72 skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 72 SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI 151 (307)
T ss_pred cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence 7788888 9999999999999999999999999999999999 9999999999999999865 6788888788889999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCcee
Q 003871 593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT 671 (790)
Q Consensus 593 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~ 671 (790)
..+ +..|++|+.||+++.||++.|..... .-+ .+|+++.|++|+...+++ -|+++++.|-.+|+.+
T Consensus 152 ~v~--~heIvaGS~DGtvRtydiR~G~l~sD------y~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 152 DVA--EHEIVAGSVDGTVRTYDIRKGTLSSD------YFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred Eec--ccEEEeeccCCcEEEEEeecceeehh------hcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence 886 45799999999999999998653221 112 489999999999988874 8999999999999999
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEE
Q 003871 672 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 672 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~ 751 (790)
+.+.++.....-...+++.....+++|++||.|++||+..+..+..+..+ + .+.+.+++++| .-.-|.++
T Consensus 219 ~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~--------~-~v~v~dl~~hp-~~~~f~~A 288 (307)
T KOG0316|consen 219 KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVV--------S-TVIVTDLSCHP-TMDDFITA 288 (307)
T ss_pred HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccC--------C-ceeEEeeeccc-CccceeEe
Confidence 99987654555667788888889999999999999999999888777532 2 44456999999 45555555
Q ss_pred eCCCcEEEEecC
Q 003871 752 LTNGRVHVIEPL 763 (790)
Q Consensus 752 s~Dg~i~iW~~~ 763 (790)
. ++.+..|.-.
T Consensus 289 ~-~~~~~~~~~~ 299 (307)
T KOG0316|consen 289 T-GHGDLFWYQE 299 (307)
T ss_pred c-CCceeceeeh
Confidence 3 4556777543
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5e-30 Score=304.10 Aligned_cols=316 Identities=13% Similarity=0.143 Sum_probs=240.4
Q ss_pred CCceEeeeccccCCCCceeeeec-cCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccC
Q 003871 413 LEKSVNLKLQLINEPSECRTLLL-PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQP 491 (790)
Q Consensus 413 d~~i~iwd~~~~~~~~~~~~~~l-~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~ 491 (790)
+|-+++|+..... ....+.. ....|.+.|.+++|+|+|+++++|+.|+.|++|+...... .+.. .
T Consensus 457 ~gl~~~~~~~~~~---~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~-~~~~----------~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLR---VKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK-DGRD----------I 522 (793)
T ss_pred hhhhhhhcccceE---EEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc-cccc----------c
Confidence 5667888875311 1111110 0124899999999999999999999999999999764211 0000 0
Q ss_pred CCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcC-CC-eEEEEeCC
Q 003871 492 SSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDD 565 (790)
Q Consensus 492 ~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~-~g-~l~sgs~d 565 (790)
... ... . .+...|.+++|+ +.+|++++ ||+|++||+.+++.+..+.+|...|++++|+| ++ +|++|+.|
T Consensus 523 ~~~-~~~--~--~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D 597 (793)
T PLN00181 523 HYP-VVE--L--ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD 597 (793)
T ss_pred ccc-eEE--e--cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC
Confidence 000 011 1 245678999998 67899998 99999999999999999999999999999997 66 99999999
Q ss_pred CcEEEEeCCCCceEEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEE
Q 003871 566 SSILVHCPCTKKTKAKLKGHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 644 (790)
Q Consensus 566 g~I~iwd~~~~~~~~~l~~h~~~v~~l~~s-pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~ 644 (790)
|+|++||+.++..+..+..+ ..|.++.|+ ++|.++++|+.|+.|++||+++++ .++. ...+|. ..|.++.
T Consensus 598 g~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~----~~~~-~~~~h~---~~V~~v~ 668 (793)
T PLN00181 598 GSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK----LPLC-TMIGHS---KTVSYVR 668 (793)
T ss_pred CEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC----ccce-EecCCC---CCEEEEE
Confidence 99999999999888888754 679999995 479999999999999999998743 1233 223565 6899999
Q ss_pred EeCCCCEEEE-EeCCcEEEEECCCC------ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003871 645 FHPDQIHLLS-IHEGQIDVYEAPTL------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 717 (790)
Q Consensus 645 ~sp~~~~l~~-~~dg~I~iwd~~~~------~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~ 717 (790)
|. ++.++++ +.|+.|++||++.+ .++.++.+ |...+..++|+|++++|++|+.|+.|++|+......+..
T Consensus 669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g--h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s 745 (793)
T PLN00181 669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG--HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLS 745 (793)
T ss_pred Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC--CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEE
Confidence 97 5667777 58999999999743 45666654 688899999999999999999999999999887655443
Q ss_pred eccccc-cCC----CCcccccceEEEEEecCCCCEEEEEeCCCcEEEEec
Q 003871 718 INLTAY-AQP----GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 718 ~~~~~~-~~~----gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
+..... ... .++...|. +++|+| ++.+|++|+.||.|+||++
T Consensus 746 ~~~~~~~~~~~~~~~~~~~~V~--~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 746 YKFKTIDPVSGLEVDDASQFIS--SVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EecccCCcccccccCCCCcEEE--EEEEcC-CCCeEEEecCCCcEEEEec
Confidence 321100 000 11233455 999999 8999999999999999986
No 45
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=1.5e-30 Score=271.65 Aligned_cols=402 Identities=13% Similarity=0.120 Sum_probs=302.5
Q ss_pred ccc-ccccCccccchhhhhhhhccCCCccccccccCCC---------CCCCcceeeeccCCCcccccccccCCCCCCCCC
Q 003871 304 MLQ-DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSNLRYASSILTDKPNQEGR 373 (790)
Q Consensus 304 ~la-~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd---------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h 373 (790)
|.| ..|.++|+......+.+..|...++ |++|||+ +....++ +|++.....+ ..|..|
T Consensus 54 YpAGCvVVlfn~~~~tQ~hlvnssRk~~t--~vAfS~~GryvatGEcG~~pa~k--Vw~la~h~vV--------AEfvdH 121 (1080)
T KOG1408|consen 54 YPAGCVVVLFNVDSCTQSHLVNSSRKPLT--CVAFSQNGRYVATGECGRTPASK--VWSLAFHGVV--------AEFVDH 121 (1080)
T ss_pred eccCcEEEEEcccccchhheecccCccee--EEEEcCCCcEEEecccCCCccce--eeeeccccch--------hhhhhc
Confidence 444 7788999999888888999999877 9999999 4556789 9999988877 889999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCC--CceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcC
Q 003871 374 PLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSL--EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 451 (790)
Q Consensus 374 ~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d--~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~sp 451 (790)
...| +|++|+ |.++++ ++.+.. -.|.+||... ...... ..-...|..++|+.
T Consensus 122 KY~v-------tcvaFs-------p~~kyv----vSVGsQHDMIVnv~dWr~---N~~~as-----nkiss~Vsav~fsE 175 (1080)
T KOG1408|consen 122 KYNV-------TCVAFS-------PGNKYV----VSVGSQHDMIVNVNDWRV---NSSGAS-----NKISSVVSAVAFSE 175 (1080)
T ss_pred cccc-------eeeeec-------CCCcEE----EeeccccceEEEhhhhhh---cccccc-----cccceeEEEEEEcc
Confidence 9999 999999 999999 876653 4577787642 111111 11256789999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCc------c----------------------------------cccccccc-------
Q 003871 452 SGDFLVALTQTATHKLWKWQSNKQ------S----------------------------------LEEENVNM------- 484 (790)
Q Consensus 452 dg~~l~s~~~dg~i~vw~~~~~~~------~----------------------------------~g~~~~~~------- 484 (790)
||.|+++.+. ..|++|.++.+.. . .|+.. .+
T Consensus 176 dgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLv-EFSsRRLLD 253 (1080)
T KOG1408|consen 176 DGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLV-EFSSRRLLD 253 (1080)
T ss_pred CCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEeccccee-eechhhhhh
Confidence 9999988875 6799999886652 0 00000 00
Q ss_pred --------------------------------cc----------------------------------------------
Q 003871 485 --------------------------------ES---------------------------------------------- 486 (790)
Q Consensus 485 --------------------------------~~---------------------------------------------- 486 (790)
+|
T Consensus 254 KWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fd 333 (1080)
T KOG1408|consen 254 KWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFD 333 (1080)
T ss_pred hhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEec
Confidence 00
Q ss_pred ---------------ccccCCCce----eeeecccCCCCCCeEEEEec-------------CcEEEEec-CCeEEEEECC
Q 003871 487 ---------------QLYQPSSKL----VMTNDIAADPKDSISCFALR-------------GSHLFSAS-GGKISIFSLE 533 (790)
Q Consensus 487 ---------------~i~~~~~~~----~~~~~~~~~~~~~V~~l~~s-------------~~~l~s~s-dg~I~vwd~~ 533 (790)
-+||..+.. +...+ .|...|+++.-- ...+++++ |++|++||++
T Consensus 334 et~~klscVYndhSlYvWDvrD~~kvgk~~s~l---yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~ 410 (1080)
T KOG1408|consen 334 ETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSML---YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLA 410 (1080)
T ss_pred CCCceEEEEEcCceEEEEeccccccccceeeee---eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecc
Confidence 466654432 22211 266666555432 23467777 9999999987
Q ss_pred CC---cEEEE--E--------------------------------cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC
Q 003871 534 TF---QTLAT--F--------------------------------ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT 575 (790)
Q Consensus 534 ~~---~~~~~--~--------------------------------~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~ 575 (790)
.+ ...+. + -....++.+++++|+| +||+|..-|++++|++..
T Consensus 411 ~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~ 490 (1080)
T KOG1408|consen 411 FCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE 490 (1080)
T ss_pred cccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh
Confidence 52 11110 0 0123468999999999 999999999999999998
Q ss_pred CceEEEEcCCCCCEEEEEEeC---CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCC------------------
Q 003871 576 KKTKAKLKGHQNRITCLAYSL---SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV------------------ 634 (790)
Q Consensus 576 ~~~~~~l~~h~~~v~~l~~sp---dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~------------------ 634 (790)
-+....+..|...|.|+.|+. ..++||+++.|+-|+|||+...- ..++ ...+|.
T Consensus 491 l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny----~l~q-tld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 491 LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY----DLVQ-TLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc----chhh-hhcccccceeEEEEeecCCceEEE
Confidence 888888899999999999985 34789999999999999986411 0011 111111
Q ss_pred ----------------------------CCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCC-CCCCeE
Q 003871 635 ----------------------------PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK-MDLPIT 684 (790)
Q Consensus 635 ----------------------------~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~-h~~~v~ 684 (790)
.....+..++..|..+++++ +.|..|+|||+.+|+.++.|++.. |.+...
T Consensus 566 scGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI 645 (1080)
T KOG1408|consen 566 SCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI 645 (1080)
T ss_pred eccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE
Confidence 01135666777888888888 599999999999999999998753 467888
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 685 YATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 685 ~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
.+...|.|.||++...|.++.++|..+|+++.... || +..|+ .+.|.+ |-+.|++++.||.|.||.+..
T Consensus 646 Kv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-------GH-sE~VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 646 KVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-------GH-SEAVT--GVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEECCCccEEEEeecCCceEEEEeccchhhhhhc-------Cc-chhee--eeeecc-cchhheeecCCceEEEEECch
Confidence 99999999999999999999999999999998876 76 55666 999999 899999999999999999863
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.4e-30 Score=276.30 Aligned_cols=352 Identities=14% Similarity=0.193 Sum_probs=275.3
Q ss_pred hhhhccCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 321 SLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 393 (790)
Q Consensus 321 ~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~ 393 (790)
+.++..+..+. .++|.|. -..|.|. +||.+-|.++ ..|..|.++| ..++|+
T Consensus 3 tkfEskSsRvK--glsFHP~rPwILtslHsG~IQ--lWDYRM~tli--------~rFdeHdGpV-------Rgv~FH--- 60 (1202)
T KOG0292|consen 3 TKFESKSSRVK--GLSFHPKRPWILTSLHSGVIQ--LWDYRMGTLI--------DRFDEHDGPV-------RGVDFH--- 60 (1202)
T ss_pred chhhccccccc--ceecCCCCCEEEEeecCceee--eehhhhhhHH--------hhhhccCCcc-------ceeeec---
Confidence 34555566666 9999998 5678999 9999999998 9999999999 999999
Q ss_pred CCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 003871 394 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 473 (790)
Q Consensus 394 ~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~ 473 (790)
|++..+ ++|+.|..|++|+.. ..+|.-.. .||-+.|..+.|++.-.+++++|+|.+|+||++++.
T Consensus 61 ----~~qplF----VSGGDDykIkVWnYk----~rrclftL---~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr 125 (1202)
T KOG0292|consen 61 ----PTQPLF----VSGGDDYKIKVWNYK----TRRCLFTL---LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR 125 (1202)
T ss_pred ----CCCCeE----EecCCccEEEEEecc----cceehhhh---ccccceeEEeeccCCCceEEEccCCCeEEEEeccCC
Confidence 999999 999999999999997 35554322 389999999999999999999999999999999875
Q ss_pred CccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCC--------C-------
Q 003871 474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET--------F------- 535 (790)
Q Consensus 474 ~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~--------~------- 535 (790)
.+ +.. ..||...|.|..|+ ...++++| |.+|++||+.. +
T Consensus 126 ~~---------------------iav--ltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~ 182 (1202)
T KOG0292|consen 126 KC---------------------IAV--LTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMR 182 (1202)
T ss_pred ce---------------------EEE--EecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhh
Confidence 44 221 23899999999999 78999999 99999999842 1
Q ss_pred ------------c--EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce--EEEEcCCCCCEEEEEEeCCC
Q 003871 536 ------------Q--TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSL 598 (790)
Q Consensus 536 ------------~--~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~--~~~l~~h~~~v~~l~~spdg 598 (790)
. ....+.+|+.+|+-++|+|.- .+++|++|+.|++|.+...+. +.+.+||.+.|.++-|+|..
T Consensus 183 ~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q 262 (1202)
T KOG0292|consen 183 GQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ 262 (1202)
T ss_pred ccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCcc
Confidence 0 123457999999999999999 999999999999999876543 45578999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCC
Q 003871 599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK 678 (790)
Q Consensus 599 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~ 678 (790)
+++++.|.|++|+|||+.. ...++++...+ +..+.++-+|..+++++|+|+.+.+|-++.-++..
T Consensus 263 ~lIlSnsEDksirVwDm~k-----Rt~v~tfrren----dRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~------ 327 (1202)
T KOG0292|consen 263 DLILSNSEDKSIRVWDMTK-----RTSVQTFRREN----DRFWILAAHPELNLFAAGHDSGMIVFKLERERPAY------ 327 (1202)
T ss_pred ceeEecCCCccEEEEeccc-----ccceeeeeccC----CeEEEEEecCCcceeeeecCCceEEEEEcccCceE------
Confidence 9999999999999999987 34555555555 48999999999999999999999998875333221
Q ss_pred CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCC-cE
Q 003871 679 MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG-RV 757 (790)
Q Consensus 679 h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg-~i 757 (790)
+.+ ++.|.-.- |..|+-+|+.+.+-....... ..|.-..+.+ +++|+|..+..|++...|+ .-
T Consensus 328 --------~v~--~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr---~~g~~~~~~~--smsYNpae~~vlics~~~n~~y 391 (1202)
T KOG0292|consen 328 --------AVN--GNGLFYVK-DRFIRSYDLRTQKDTAVASLR---RPGTLWQPPR--SLSYNPAENAVLICSNLDNGEY 391 (1202)
T ss_pred --------EEc--CCEEEEEc-cceEEeeeccccccceeEecc---CCCcccCCcc--eeeeccccCeEEEEeccCCCeE
Confidence 121 23333332 889999999986544333221 1122234556 8999997666677665554 33
Q ss_pred EEEecC
Q 003871 758 HVIEPL 763 (790)
Q Consensus 758 ~iW~~~ 763 (790)
-++.+.
T Consensus 392 ~L~~ip 397 (1202)
T KOG0292|consen 392 ELVQIP 397 (1202)
T ss_pred EEEEec
Confidence 445443
No 47
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5.9e-31 Score=241.12 Aligned_cols=243 Identities=16% Similarity=0.233 Sum_probs=215.5
Q ss_pred CCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE
Q 003871 504 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 579 (790)
Q Consensus 504 ~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~ 579 (790)
.+.++|..+.|+ |+|.++++ |.+|++|+...|.+++++.+|...|..++.+.|+ .+++|+.|..|.+||+.+|+.+
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~ 94 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVD 94 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeee
Confidence 689999999999 99988887 9999999999999999999999999999999999 9999999999999999999999
Q ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCC
Q 003871 580 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG 658 (790)
Q Consensus 580 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg 658 (790)
+.|.+|.+.|+.+.|+.+...+++|+.|.++++||.++.. ..|++.+.+.. ..|.++..+. ..+++ +.||
T Consensus 95 Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s---~ePiQildea~----D~V~Si~v~~--heIvaGS~DG 165 (307)
T KOG0316|consen 95 RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS---FEPIQILDEAK----DGVSSIDVAE--HEIVAGSVDG 165 (307)
T ss_pred eecccccceeeEEEecCcceEEEeccccceeEEEEcccCC---CCccchhhhhc----CceeEEEecc--cEEEeeccCC
Confidence 9999999999999999999999999999999999999854 46677444433 4788888763 35555 5899
Q ss_pred cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEE
Q 003871 659 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 738 (790)
Q Consensus 659 ~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 738 (790)
+++.||++.|+....+. ..+|++++|++|++..++++.|+++++.|-.+|++++.+. ||.+ .-+-+.+
T Consensus 166 tvRtydiR~G~l~sDy~----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-------Ghkn-~eykldc 233 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYF----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-------GHKN-MEYKLDC 233 (307)
T ss_pred cEEEEEeecceeehhhc----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-------cccc-ceeeeee
Confidence 99999999998766553 6789999999999999999999999999999999999887 6633 4555688
Q ss_pred EEecCCCCEEEEEeCCCcEEEEecCCCccc
Q 003871 739 AAHPLEPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 739 ~~sp~d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
+++. ....+++||+||.|++||+..+...
T Consensus 234 ~l~q-sdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 234 CLNQ-SDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred eecc-cceeEEeccCCceEEEEEeccceee
Confidence 8888 6789999999999999999887644
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=7.4e-31 Score=254.07 Aligned_cols=286 Identities=14% Similarity=0.160 Sum_probs=245.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
+.+.||.++| .|+++. |-.+++ +||+.|++++|||+. ++++.. ++ .||-..|..+
T Consensus 145 rVi~gHlgWV-------r~vavd-------P~n~wf----~tgs~DrtikIwDla----tg~Lkl-tl--tGhi~~vr~v 199 (460)
T KOG0285|consen 145 RVISGHLGWV-------RSVAVD-------PGNEWF----ATGSADRTIKIWDLA----TGQLKL-TL--TGHIETVRGV 199 (460)
T ss_pred hhhhhccceE-------EEEeeC-------CCceeE----EecCCCceeEEEEcc----cCeEEE-ee--cchhheeeee
Confidence 7889999999 999997 878899 999999999999997 455543 33 4799999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-C
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 524 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-d 524 (790)
++|+...|+++++.|+.|+.||+..++. ++.. .+|-+.|+|++.. -..|++|+ |
T Consensus 200 avS~rHpYlFs~gedk~VKCwDLe~nkv---------------------IR~Y--hGHlS~V~~L~lhPTldvl~t~grD 256 (460)
T KOG0285|consen 200 AVSKRHPYLFSAGEDKQVKCWDLEYNKV---------------------IRHY--HGHLSGVYCLDLHPTLDVLVTGGRD 256 (460)
T ss_pred eecccCceEEEecCCCeeEEEechhhhh---------------------HHHh--ccccceeEEEeccccceeEEecCCc
Confidence 9999999999999999999999886543 2211 2799999999999 78899999 9
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEE
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 603 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s 603 (790)
.++++||+++...+..+.+|..+|..+.+.|.+ .+++||.|++|++||+..|+....+..|...|.+++.+|....+|+
T Consensus 257 st~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fAS 336 (460)
T KOG0285|consen 257 STIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFAS 336 (460)
T ss_pred ceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhc
Confidence 999999999999999999999999999999988 9999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeec---CCC--
Q 003871 604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLV---PDK-- 678 (790)
Q Consensus 604 ~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~---~~~-- 678 (790)
++.| .|+-|++..|.. ++. ..+|. +.|++++...|+-++..+..|.+..||.++|...+... ..+
T Consensus 337 as~d-nik~w~~p~g~f-----~~n-lsgh~---~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl 406 (460)
T KOG0285|consen 337 ASPD-NIKQWKLPEGEF-----LQN-LSGHN---AIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSL 406 (460)
T ss_pred cCCc-cceeccCCccch-----hhc-ccccc---ceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCcc
Confidence 9877 789999988653 332 34566 68999999999865555688999999999886554432 111
Q ss_pred -CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 679 -MDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 679 -h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
....|.+.+|...|..|++|..|.+|++|.-+.
T Consensus 407 ~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 407 ESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 256789999999999999999999999997543
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=9.8e-30 Score=264.67 Aligned_cols=282 Identities=24% Similarity=0.286 Sum_probs=241.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
+++++|.++| ++++|+ |+++.+ ++++.||.+++|++.. ......+ .+|...+..+
T Consensus 3 ~~~~~h~~~i-------~~~~~~-------~~~~~l----~~~~~~g~i~i~~~~~---~~~~~~~----~~~~~~i~~~ 57 (289)
T cd00200 3 RTLKGHTGGV-------TCVAFS-------PDGKLL----ATGSGDGTIKVWDLET---GELLRTL----KGHTGPVRDV 57 (289)
T ss_pred hHhcccCCCE-------EEEEEc-------CCCCEE----EEeecCcEEEEEEeeC---CCcEEEE----ecCCcceeEE
Confidence 5677999999 999999 999999 9999999999999974 2222222 2588899999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-C
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 524 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-d 524 (790)
.|+|+++++++++.+|.+.+|++.++.. ... ...|...|.++.|+ ++++++++ +
T Consensus 58 ~~~~~~~~l~~~~~~~~i~i~~~~~~~~--------------------~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~ 114 (289)
T cd00200 58 AASADGTYLASGSSDKTIRLWDLETGEC--------------------VRT---LTGHTSYVSSVAFSPDGRILSSSSRD 114 (289)
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCcccc--------------------eEE---EeccCCcEEEEEEcCCCCEEEEecCC
Confidence 9999999999999999999999876322 111 11577899999999 67888888 9
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEE
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 603 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s 603 (790)
+.|.+||+.+++....+..|...+.+++|+|++ ++++++.|+.|++||+++++.+..+..|...+.++.|+|+++.+++
T Consensus 115 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 194 (289)
T cd00200 115 KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS 194 (289)
T ss_pred CeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEE
Confidence 999999999999999998899999999999999 8888888999999999999888889899999999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEe-CCcEEEEECCCCceeeeecCCCCCCC
Q 003871 604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNHTSQLVPDKMDLP 682 (790)
Q Consensus 604 ~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-dg~I~iwd~~~~~~~~~~~~~~h~~~ 682 (790)
++.|+.|++||+++++. +. ....|. ..+.+++|+|++.+++++. ++.|++||+.+++....+. .|...
T Consensus 195 ~~~~~~i~i~d~~~~~~-----~~-~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~ 263 (289)
T cd00200 195 SSSDGTIKLWDLSTGKC-----LG-TLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--GHTNS 263 (289)
T ss_pred ecCCCcEEEEECCCCce-----ec-chhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--ccCCc
Confidence 99999999999987442 22 222343 5899999999988888875 9999999999888888876 36789
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 683 ITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 683 v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
+.+++|+|+++++++++.||.+++|+
T Consensus 264 i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 264 VTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999999999999999999996
No 50
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=4.1e-32 Score=261.40 Aligned_cols=271 Identities=17% Similarity=0.204 Sum_probs=225.1
Q ss_pred ccccccCCC-----CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 003871 332 PYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADS 406 (790)
Q Consensus 332 v~~i~fspd-----~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~ 406 (790)
|+|+.+..+ ..|++|+ |||..+-+++ +.+.||++.| -|+.|. .+.+
T Consensus 200 VYClQYDD~kiVSGlrDnTik--iWD~n~~~c~--------~~L~GHtGSV-------LCLqyd---------~rvi--- 250 (499)
T KOG0281|consen 200 VYCLQYDDEKIVSGLRDNTIK--IWDKNSLECL--------KILTGHTGSV-------LCLQYD---------ERVI--- 250 (499)
T ss_pred eEEEEecchhhhcccccCceE--EeccccHHHH--------HhhhcCCCcE-------Eeeecc---------ceEE---
Confidence 558888877 7899999 9999999998 9999999999 899986 6778
Q ss_pred ceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccccccccc
Q 003871 407 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES 486 (790)
Q Consensus 407 ~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~ 486 (790)
++|++|.+|+|||++ ++.+....+ +|...|..+.|+. .++++++.|.++.+||+.....
T Consensus 251 -isGSSDsTvrvWDv~----tge~l~tli---hHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~----------- 309 (499)
T KOG0281|consen 251 -VSGSSDSTVRVWDVN----TGEPLNTLI---HHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD----------- 309 (499)
T ss_pred -EecCCCceEEEEecc----CCchhhHHh---hhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH-----------
Confidence 999999999999998 466655443 6899999999984 4899999999999999876322
Q ss_pred ccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeC
Q 003871 487 QLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD 564 (790)
Q Consensus 487 ~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~ 564 (790)
-.++.. ..||...|+.+.|+.+++++++ |.+|++|++.++++++++.+|..+|.|+.+ .| ++++|+.
T Consensus 310 -------it~rrV--LvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS 378 (499)
T KOG0281|consen 310 -------ITLRRV--LVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS 378 (499)
T ss_pred -------HHHHHH--HhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC
Confidence 012221 2389999999999988999999 999999999999999999999999999887 46 9999999
Q ss_pred CCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee----ceeeeeeccCCCCCCCCe
Q 003871 565 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC----SKFLHSFQTGLVPETTIV 640 (790)
Q Consensus 565 dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~----~~~l~~~~~~~~~~~~~v 640 (790)
|.+|++||+..|.++..++||..-|.++.|. .+.+++|+.||+|++||+.++.... ...+. ....|+ +.|
T Consensus 379 DntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~-~lv~hs---gRV 452 (499)
T KOG0281|consen 379 DNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLR-TLVEHS---GRV 452 (499)
T ss_pred CceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHH-hhhhcc---cee
Confidence 9999999999999999999999999999995 6789999999999999998854211 01122 122344 789
Q ss_pred EEEEEeCCCCEEEE-EeCCcEEEEECCCCcee
Q 003871 641 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT 671 (790)
Q Consensus 641 ~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~ 671 (790)
..+.|. ...+++ +.|.+|.|||..++.+-
T Consensus 453 FrLQFD--~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 453 FRLQFD--EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EEEeec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence 999996 345555 69999999999876543
No 51
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.5e-30 Score=265.01 Aligned_cols=276 Identities=18% Similarity=0.276 Sum_probs=238.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
.++.+|.++.|+|...+++++-.+|.+.|||.++... +..+. -..-||.+..|- .
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm--------------------Vksfe---V~~~PvRa~kfiaRk 67 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM--------------------VKSFE---VSEVPVRAAKFIARK 67 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEeccccee--------------------eeeee---ecccchhhheeeecc
Confidence 3789999999999999999999999999999887443 11111 246788888888 7
Q ss_pred cEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEEEcCCCCCEEEEE
Q 003871 517 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLA 593 (790)
Q Consensus 517 ~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~v~~l~ 593 (790)
+.+++|+ |..|++|+..+++.++.|..|.+-|++++.+|.. +++++|+|-+|++||.+.+ .+.+.+.||+..|.+++
T Consensus 68 nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 68 NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA 147 (794)
T ss_pred ceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence 8899999 8999999999999999999999999999999999 9999999999999999866 67789999999999999
Q ss_pred EeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCC--CEEEEE-eCCcEEEEECCCCc
Q 003871 594 YSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSI-HEGQIDVYEAPTLN 669 (790)
Q Consensus 594 ~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~--~~l~~~-~dg~I~iwd~~~~~ 669 (790)
|+| |.+.+|+++-|++|+||.+.. ..+..++ .+|. ..|+|+.+-+-| .+|++| .|..|+|||.++..
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs-----~~~nfTl-~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~ 218 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGS-----PHPNFTL-EGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS 218 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCC-----CCCceee-eccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHH
Confidence 999 788999999999999999987 2344423 3777 699999998755 688886 88899999999999
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEE
Q 003871 670 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 749 (790)
Q Consensus 670 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~la 749 (790)
|++++.+ |...|..++|+|.-..+++|++||+++||+..|.++...+.. | .+.++ +++..+ +++.++
T Consensus 219 CV~TLeG--Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~------g--leRvW--~I~~~k-~~~~i~ 285 (794)
T KOG0276|consen 219 CVQTLEG--HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY------G--LERVW--CIAAHK-GDGKIA 285 (794)
T ss_pred HHHHhhc--ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc------C--CceEE--EEeecC-CCCeEE
Confidence 9999975 789999999999999999999999999999999988877753 2 45778 999888 666788
Q ss_pred EEeCCCcEEE
Q 003871 750 LGLTNGRVHV 759 (790)
Q Consensus 750 s~s~Dg~i~i 759 (790)
.|.++|.|.+
T Consensus 286 vG~Deg~i~v 295 (794)
T KOG0276|consen 286 VGFDEGSVTV 295 (794)
T ss_pred EeccCCcEEE
Confidence 8877776544
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.4e-30 Score=274.28 Aligned_cols=291 Identities=16% Similarity=0.233 Sum_probs=245.8
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--Cc
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 517 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~ 517 (790)
.+.+|.+++|+|...+++++--+|.|++||.+-+.. +.. ...|.++|..++|+ ..
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl---------------------i~r--FdeHdGpVRgv~FH~~qp 64 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL---------------------IDR--FDEHDGPVRGVDFHPTQP 64 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhH---------------------Hhh--hhccCCccceeeecCCCC
Confidence 467899999999999999999999999999764322 211 12699999999999 88
Q ss_pred EEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEe
Q 003871 518 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 595 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~s 595 (790)
++++|+ |-.|++|+..+.+++.++.+|-+.|+.+.|++.- .++++|+|.+|+||+..+++++..+.||...|.|..|+
T Consensus 65 lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred eEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 999999 7899999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceee-----------------------ceeeeeeccCCCCCCCCeEEEEEeCCCCEE
Q 003871 596 LSLNVLVSSGADAQLCVWDAVGWKKLC-----------------------SKFLHSFQTGLVPETTIVNHIQFHPDQIHL 652 (790)
Q Consensus 596 pdg~~l~s~s~dg~I~vwd~~~~~~~~-----------------------~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l 652 (790)
|....++++|-|.+|||||+..-+... ...++-+.+||+ ..|+.++|+|.-..+
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD---RGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD---RGVNWAAFHPTLPLI 221 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc---cccceEEecCCcceE
Confidence 988999999999999999997632211 112333566787 699999999999999
Q ss_pred EEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCccc
Q 003871 653 LSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 731 (790)
Q Consensus 653 ~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~ 731 (790)
++| .|..|++|.....+.-..-...+|...|.++-|+|....+++.|+|++|+|||+.....++++. +..+
T Consensus 222 VSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr--------rend 293 (1202)
T KOG0292|consen 222 VSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR--------REND 293 (1202)
T ss_pred EecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee--------ccCC
Confidence 996 8889999998765543332334589999999999999999999999999999999998888885 2355
Q ss_pred ccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccc
Q 003871 732 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 732 ~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
..+ .++-|| ..+++|.| .|+.+.||.++...+.
T Consensus 294 RFW--~laahP-~lNLfAAg-HDsGm~VFkleRErpa 326 (1202)
T KOG0292|consen 294 RFW--ILAAHP-ELNLFAAG-HDSGMIVFKLERERPA 326 (1202)
T ss_pred eEE--EEEecC-Ccceeeee-cCCceEEEEEcccCce
Confidence 677 888899 77777765 6777888888754433
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=9.6e-30 Score=280.36 Aligned_cols=290 Identities=17% Similarity=0.191 Sum_probs=239.9
Q ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEE
Q 003871 368 PNQEGR-PLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVR 446 (790)
Q Consensus 368 ~~l~~h-~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~ 446 (790)
..+.+| ...| .++.|+ |||+.+ ++++.|+.+++|+....+. .....+ .+|...|.+
T Consensus 152 ~~~~~~~~~sv-------~~~~fs-------~~g~~l----~~~~~~~~i~~~~~~~~~~-~~~~~l----~~h~~~v~~ 208 (456)
T KOG0266|consen 152 QTLAGHECPSV-------TCVDFS-------PDGRAL----AAASSDGLIRIWKLEGIKS-NLLREL----SGHTRGVSD 208 (456)
T ss_pred eeecccccCce-------EEEEEc-------CCCCeE----EEccCCCcEEEeecccccc-hhhccc----cccccceee
Confidence 444444 5566 899999 999999 9999999999999964221 112221 479999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-
Q 003871 447 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS- 523 (790)
Q Consensus 447 l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s- 523 (790)
++|+|+|+++++++.|+++++||+... +..+..+ .+|...|++++|+ ++++++|+
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~~--------------------~~~~~~l--~gH~~~v~~~~f~p~g~~i~Sgs~ 266 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKDD--------------------GRNLKTL--KGHSTYVTSVAFSPDGNLLVSGSD 266 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccCC--------------------CeEEEEe--cCCCCceEEEEecCCCCEEEEecC
Confidence 999999999999999999999998432 1233322 2899999999999 88999999
Q ss_pred CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc--eEEEEcCCCCC--EEEEEEeCCC
Q 003871 524 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNR--ITCLAYSLSL 598 (790)
Q Consensus 524 dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~--~~~~l~~h~~~--v~~l~~spdg 598 (790)
|++|++||++++++...+.+|...|++++|++++ .+++++.|+.|++||+.++. +...+.++... ++++.|+|++
T Consensus 267 D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~ 346 (456)
T KOG0266|consen 267 DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG 346 (456)
T ss_pred CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC
Confidence 9999999999999999999999999999999999 99999999999999999998 56777776655 9999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCC
Q 003871 599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPD 677 (790)
Q Consensus 599 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~ 677 (790)
.++++++.|+.+++||+..+... . ...+|......+.+...++.++++++| .|+.|++||+.++..+..+.+
T Consensus 347 ~~ll~~~~d~~~~~w~l~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~- 419 (456)
T KOG0266|consen 347 KYLLSASLDRTLKLWDLRSGKSV-----G-TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG- 419 (456)
T ss_pred cEEEEecCCCeEEEEEccCCcce-----e-eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcC-
Confidence 99999999999999999985432 2 222333100145555668899999996 899999999999888888765
Q ss_pred CC-CCCeEEEEEecCCCEEEEEE--cCCeEEEEECC
Q 003871 678 KM-DLPITYATYSCDGKCIYVSC--KSGHVKVFDTS 710 (790)
Q Consensus 678 ~h-~~~v~~l~~s~dg~~l~sgs--~dg~i~vwd~~ 710 (790)
| ...+..++++|..+++++++ .|+.+++|...
T Consensus 420 -h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 420 -HSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred -CCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 5 78899999999999999998 68999999754
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=7.5e-29 Score=294.06 Aligned_cols=312 Identities=13% Similarity=0.122 Sum_probs=238.3
Q ss_pred CCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeecc
Q 003871 343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQ 422 (790)
Q Consensus 343 d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~ 422 (790)
+|.++ +|+..+..... .+. ...+.+|.+.| ++++|+ |||+++ |+|+.|+.|+||+..
T Consensus 457 ~gl~~--~~~~~~~~~~~--~~~-~~~~~~~~~~V-------~~i~fs-------~dg~~l----atgg~D~~I~iwd~~ 513 (793)
T PLN00181 457 EGLCK--YLSFSKLRVKA--DLK-QGDLLNSSNLV-------CAIGFD-------RDGEFF----ATAGVNKKIKIFECE 513 (793)
T ss_pred hhhhh--hhcccceEEEE--eec-cccccCCCCcE-------EEEEEC-------CCCCEE----EEEeCCCEEEEEECC
Confidence 55677 77765443210 000 02345688888 999999 999999 999999999999985
Q ss_pred ccCCCCce---eeeeccCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeee
Q 003871 423 LINEPSEC---RTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT 498 (790)
Q Consensus 423 ~~~~~~~~---~~~~l~~~~h~~~V~~l~~sp-dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~ 498 (790)
........ ....+ .+...|.+++|+| ++.+|++++.||+|++||+.++.. ..
T Consensus 514 ~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~---------------------~~ 569 (793)
T PLN00181 514 SIIKDGRDIHYPVVEL---ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL---------------------VT 569 (793)
T ss_pred cccccccccccceEEe---cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE---------------------EE
Confidence 31101110 11111 2456899999987 478999999999999999875332 11
Q ss_pred ecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEe
Q 003871 499 NDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHC 572 (790)
Q Consensus 499 ~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~-~g-~l~sgs~dg~I~iwd 572 (790)
. ..+|...|++++|+ +.+|++|+ ||+|++||+.++..+..+..+ ..+.++.|++ +| .+++|+.||.|++||
T Consensus 570 ~--~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD 646 (793)
T PLN00181 570 E--MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYD 646 (793)
T ss_pred E--ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 1 13699999999997 67899999 999999999999988888754 5789999954 57 999999999999999
Q ss_pred CCCCc-eEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-eeceeeeeeccCCCCCCCCeEEEEEeCCCC
Q 003871 573 PCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-LCSKFLHSFQTGLVPETTIVNHIQFHPDQI 650 (790)
Q Consensus 573 ~~~~~-~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~-~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~ 650 (790)
+++++ .+..+.+|...|.++.|. ++.++++++.|++|++||+..+.. ....++. ...+|. ..+.+++|+|++.
T Consensus 647 ~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~-~~~gh~---~~i~~v~~s~~~~ 721 (793)
T PLN00181 647 LRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLH-SFMGHT---NVKNFVGLSVSDG 721 (793)
T ss_pred CCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceE-EEcCCC---CCeeEEEEcCCCC
Confidence 98765 567788999999999997 678999999999999999975321 0112344 334565 6889999999999
Q ss_pred EEEEE-eCCcEEEEECCCCceeeeec-----------CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 003871 651 HLLSI-HEGQIDVYEAPTLNHTSQLV-----------PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 651 ~l~~~-~dg~I~iwd~~~~~~~~~~~-----------~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~ 709 (790)
+|++| .|+.|++|+......+..+. ...+...|.+++|+|++..|++|+.||.|+||++
T Consensus 722 ~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 722 YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99995 89999999987655443221 1223567999999999999999999999999996
No 55
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.1e-29 Score=269.02 Aligned_cols=271 Identities=16% Similarity=0.221 Sum_probs=211.4
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc----------------ccc----------ccccc--------c
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ----------------SLE----------EENVN--------M 484 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~----------------~~g----------~~~~~--------~ 484 (790)
.|.+.|+++.||+||+|||+||.|+.|+||.+..... ..+ ..... -
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6999999999999999999999999999999876211 000 00000 0
Q ss_pred cc-ccccCCCceeee--ecccCCCCCCeEEEEec-CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--
Q 003871 485 ES-QLYQPSSKLVMT--NDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-- 557 (790)
Q Consensus 485 ~~-~i~~~~~~~~~~--~~~~~~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-- 557 (790)
.+ .+.......+.. .....||.+.|..+.|+ +++|++++ |.+|++|++....|++.|. |.+-|+|++|+|-+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence 00 011111110100 01123899999999999 99999999 9999999999999999997 99999999999988
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCC
Q 003871 558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 637 (790)
Q Consensus 558 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~ 637 (790)
++++|+-||.|+||++...+.+.-.. -..-|++++|.|||+..+.|+.+|.+++|+....+......+. ...+.....
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~-~~~~Kk~~~ 501 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR-LHNKKKKQG 501 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe-eccCccccC
Confidence 99999999999999998766654443 3478999999999999999999999999999986665544444 221111111
Q ss_pred CCeEEEEEeCCC--CEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003871 638 TIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 638 ~~v~~i~~sp~~--~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
..|+.+.|.|.. +.|+++.|..|+|||.++..++..|++......-....|+.||++|++|++|..|++|+....
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 379999999854 377778999999999999999999987655666788899999999999999999999998543
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=4.7e-31 Score=254.14 Aligned_cols=259 Identities=14% Similarity=0.163 Sum_probs=222.9
Q ss_pred CCcccccccccchhhhhchhhhhcCccccccccCccccchhhhhhhhccCCCccccccccCCC-----CCCCcceeeecc
Q 003871 278 QQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFP 352 (790)
Q Consensus 278 ~~~l~s~~~d~v~l~~~~~~~~~~~~~la~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd-----~~d~~i~l~iwd 352 (790)
++.++||.+| .+|+|||..+..++..+.||++.|. |+.|..- +.|.+|+ |||
T Consensus 207 D~kiVSGlrD-------------------nTikiWD~n~~~c~~~L~GHtGSVL--CLqyd~rviisGSSDsTvr--vWD 263 (499)
T KOG0281|consen 207 DEKIVSGLRD-------------------NTIKIWDKNSLECLKILTGHTGSVL--CLQYDERVIVSGSSDSTVR--VWD 263 (499)
T ss_pred chhhhccccc-------------------CceEEeccccHHHHHhhhcCCCcEE--eeeccceEEEecCCCceEE--EEe
Confidence 4788999999 8999999999999999999999987 9999887 8999999 999
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceee
Q 003871 353 TVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT 432 (790)
Q Consensus 353 ~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~ 432 (790)
+++|+++ .++-+|...| -.+.|+ ..++ +|++.|.++.+||+.... ...+..
T Consensus 264 v~tge~l--------~tlihHceaV-------Lhlrf~---------ng~m----vtcSkDrsiaVWdm~sps-~it~rr 314 (499)
T KOG0281|consen 264 VNTGEPL--------NTLIHHCEAV-------LHLRFS---------NGYM----VTCSKDRSIAVWDMASPT-DITLRR 314 (499)
T ss_pred ccCCchh--------hHHhhhccee-------EEEEEe---------CCEE----EEecCCceeEEEeccCch-HHHHHH
Confidence 9999998 9999999999 899998 6677 999999999999997522 112233
Q ss_pred eeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEE
Q 003871 433 LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 512 (790)
Q Consensus 433 ~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l 512 (790)
+. .||...|..+.|+. +++++++.|.+|++|++.+... +.. ..+|...|-|+
T Consensus 315 VL---vGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~ef---------------------vRt--l~gHkRGIACl 366 (499)
T KOG0281|consen 315 VL---VGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEF---------------------VRT--LNGHKRGIACL 366 (499)
T ss_pred HH---hhhhhheeeecccc--ceEEEecCCceEEEEeccceee---------------------ehh--hhcccccceeh
Confidence 22 38999999999974 5999999999999998876433 322 23799999999
Q ss_pred EecCcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCc---------eEEEE
Q 003871 513 ALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK---------TKAKL 582 (790)
Q Consensus 513 ~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~---------~~~~l 582 (790)
.+.|+++++|+ |.+|++||++.|.+++.+++|..-|.|+.|... .+++|+.||+|++||+.++. ++..+
T Consensus 367 QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k-rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~l 445 (499)
T KOG0281|consen 367 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK-RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTL 445 (499)
T ss_pred hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCc-eeeeccccceEEEEecccccCCcccccchHHHhh
Confidence 99999999999 999999999999999999999999999999532 99999999999999998763 33445
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 003871 583 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619 (790)
Q Consensus 583 ~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 619 (790)
..|++.|..+.|. ...+++++.|.+|.+||...+.
T Consensus 446 v~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 446 VEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred hhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCC
Confidence 6699999999994 5689999999999999998753
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=8.6e-30 Score=256.63 Aligned_cols=287 Identities=12% Similarity=0.148 Sum_probs=238.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRES-TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVR 446 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~-dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~ 446 (790)
.++.||+..| +++.|. | .+.++ ++++.|+.|+||++.+ .+.|.+.. .||..+|.+
T Consensus 208 ~~~~gH~kgv-------sai~~f-------p~~~hLl----LS~gmD~~vklW~vy~---~~~~lrtf---~gH~k~Vrd 263 (503)
T KOG0282|consen 208 HNLSGHTKGV-------SAIQWF-------PKKGHLL----LSGGMDGLVKLWNVYD---DRRCLRTF---KGHRKPVRD 263 (503)
T ss_pred eeccCCcccc-------chhhhc-------cceeeEE----EecCCCceEEEEEEec---Ccceehhh---hcchhhhhh
Confidence 6789999999 999998 7 67778 9999999999999985 45555544 389999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C-cEEEEec
Q 003871 447 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS 523 (790)
Q Consensus 447 l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~-~~l~s~s 523 (790)
++|+++|..++++|.|+.+++||.+++.. .... .....++|+.|. + +.+++|.
T Consensus 264 ~~~s~~g~~fLS~sfD~~lKlwDtETG~~---------------------~~~f---~~~~~~~cvkf~pd~~n~fl~G~ 319 (503)
T KOG0282|consen 264 ASFNNCGTSFLSASFDRFLKLWDTETGQV---------------------LSRF---HLDKVPTCVKFHPDNQNIFLVGG 319 (503)
T ss_pred hhccccCCeeeeeecceeeeeeccccceE---------------------EEEE---ecCCCceeeecCCCCCcEEEEec
Confidence 99999999999999999999998776544 3322 246678899999 4 6677777
Q ss_pred -CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcC-CCCCEEEEEEeCCCCE
Q 003871 524 -GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNV 600 (790)
Q Consensus 524 -dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~-h~~~v~~l~~spdg~~ 600 (790)
|+.|+.||+++++.++.+..|-+.|..+.|-++| .+++.++|++++||+.+.+-.++.... +.-...++..+|++++
T Consensus 320 sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~ 399 (503)
T KOG0282|consen 320 SDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW 399 (503)
T ss_pred CCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe
Confidence 9999999999999999999999999999999999 999999999999999988766554422 2334668899999999
Q ss_pred EEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCC
Q 003871 601 LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKM 679 (790)
Q Consensus 601 l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h 679 (790)
++.-+.|..|.++.+...-.. .......+|.. .+.-..+.|||||++|++| .||.+.+||.++.+.+..+.. |
T Consensus 400 ~~aQs~dN~i~ifs~~~~~r~---nkkK~feGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka--h 473 (503)
T KOG0282|consen 400 FAAQSMDNYIAIFSTVPPFRL---NKKKRFEGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA--H 473 (503)
T ss_pred ehhhccCceEEEEeccccccc---CHhhhhcceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc--C
Confidence 999999999999987642111 11123345541 1566779999999999998 899999999999999998875 6
Q ss_pred CCCeEEEEEecCC-CEEEEEEcCCeEEEEE
Q 003871 680 DLPITYATYSCDG-KCIYVSCKSGHVKVFD 708 (790)
Q Consensus 680 ~~~v~~l~~s~dg-~~l~sgs~dg~i~vwd 708 (790)
..++..+.|+|.. ..+||++.||.|++||
T Consensus 474 ~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 474 DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CcceEEEEecCCCcceeEecccCceeEecC
Confidence 8999999999964 5789999999999996
No 58
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.9e-28 Score=237.48 Aligned_cols=273 Identities=15% Similarity=0.189 Sum_probs=222.9
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--Cc
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 517 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~ 517 (790)
|.+.|.++... ++++++|+.||.+++|+.... .... ..+|.++|.+++|. +.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk----------------------~~~~--~~Ght~~ik~v~~v~~n~ 157 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK----------------------SIKT--IVGHTGPIKSVAWVIKNS 157 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCc----------------------eEEE--EecCCcceeeeEEEecCC
Confidence 89999999888 779999999999999997642 2221 23899999999988 33
Q ss_pred ---EEEEec-CCeEEEEECCCCcEE----EEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC--------------
Q 003871 518 ---HLFSAS-GGKISIFSLETFQTL----ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-------------- 574 (790)
Q Consensus 518 ---~l~s~s-dg~I~vwd~~~~~~~----~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~-------------- 574 (790)
.+++++ |.++++|..+.++.. ..-.+|...|-++...++| .+++|+.|.+|.+|+..
T Consensus 158 ~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 158 SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence 488898 999999998876533 3335999999999999999 99999999999999932
Q ss_pred -----------CCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEE
Q 003871 575 -----------TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 643 (790)
Q Consensus 575 -----------~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i 643 (790)
++.++..+.||..+|.++.|++ ...+.+++.|.+|+.||+.++..... +... ..++++
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~-----~~~~-----ksl~~i 306 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKST-----LTTN-----KSLNCI 306 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceee-----eecC-----cceeEe
Confidence 1235667889999999999988 66899999999999999999654322 2222 479999
Q ss_pred EEeCCCCEEEEE-eCCcEEEEECCCCc--e-eeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCCe-EEEE
Q 003871 644 QFHPDQIHLLSI-HEGQIDVYEAPTLN--H-TSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLE-LRCQ 717 (790)
Q Consensus 644 ~~sp~~~~l~~~-~dg~I~iwd~~~~~--~-~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~dg~i~vwd~~~~~-~~~~ 717 (790)
..+|..++|++| .|..+++||.+++. . ..++. +|...|.++.|+|... .|++|+.|+++++||+++.+ .+..
T Consensus 307 ~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~--gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd 384 (423)
T KOG0313|consen 307 SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI--GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD 384 (423)
T ss_pred ecccccceeeecCCCCceeecCCCCCCCceeEEeee--cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee
Confidence 999999999995 89999999998764 2 34444 4788999999999655 57899999999999999876 6666
Q ss_pred eccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 718 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 718 ~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
+. || .+.|. ++.|+. +..+++||.|.+|+|+.-.
T Consensus 385 I~-------~h-~DKvl--~vdW~~--~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 385 IA-------GH-NDKVL--SVDWNE--GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ec-------cC-CceEE--EEeccC--CceEEeccCcceEEEeccc
Confidence 65 55 55555 999986 7899999999999998753
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.2e-28 Score=238.12 Aligned_cols=282 Identities=16% Similarity=0.202 Sum_probs=229.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcC
Q 003871 372 GRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 451 (790)
Q Consensus 372 ~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~sp 451 (790)
.|.+.| .++.-. ++++ .||+.||.+++||.. +.+.... .||.++|.+++|.-
T Consensus 103 ~hdDWV-------Ssv~~~---------~~~I----ltgsYDg~~riWd~~-----Gk~~~~~---~Ght~~ik~v~~v~ 154 (423)
T KOG0313|consen 103 LHDDWV-------SSVKGA---------SKWI----LTGSYDGTSRIWDLK-----GKSIKTI---VGHTGPIKSVAWVI 154 (423)
T ss_pred cchhhh-------hhhccc---------CceE----EEeecCCeeEEEecC-----CceEEEE---ecCCcceeeeEEEe
Confidence 488888 787765 7788 999999999999996 4444433 38999999888854
Q ss_pred CC---CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CC
Q 003871 452 SG---DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GG 525 (790)
Q Consensus 452 dg---~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg 525 (790)
.. ..+++++.|.++++|.++.+.. .........||...|-++... |..+++|+ |.
T Consensus 155 ~n~~~~~fvsas~Dqtl~Lw~~~~~~~-------------------~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 155 KNSSSCLFVSASMDQTLRLWKWNVGEN-------------------KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT 215 (423)
T ss_pred cCCccceEEEecCCceEEEEEecCchh-------------------hhhHHhHhcccccceeEEEecCCCCeEEeecccc
Confidence 33 3599999999999998776443 111111122899999999988 89999999 99
Q ss_pred eEEEEECCC-------------------------CcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEE
Q 003871 526 KISIFSLET-------------------------FQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 580 (790)
Q Consensus 526 ~I~vwd~~~-------------------------~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~ 580 (790)
.|++|+.++ +.++-++.+|..+|.++.|++.+.+++++.|.+|+.||+.++..+.
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~ 295 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKS 295 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeeccccee
Confidence 999999321 2244567899999999999985599999999999999999999888
Q ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE--EeCC
Q 003871 581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEG 658 (790)
Q Consensus 581 ~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~--~~dg 658 (790)
.+.+ ...++++.++|..++|++|+.|..+++||.+++. ...+.....+|. +.|.++.|+|...+.++ +.|+
T Consensus 296 ~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~---gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 296 TLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD---GSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred eeec-CcceeEeecccccceeeecCCCCceeecCCCCCC---CceeEEeeecch---hhhhheecCCCCceEEEEEecCC
Confidence 8775 4579999999999999999999999999999864 223332456777 79999999999887776 3899
Q ss_pred cEEEEECCCCc-eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 003871 659 QIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 659 ~I~iwd~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~ 710 (790)
++++||+++.+ ++..+.+ |...|.++.|+ ++.++++||.|++|+++.-.
T Consensus 369 t~klWDvRS~k~plydI~~--h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 369 TVKLWDVRSTKAPLYDIAG--HNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eEEEEEeccCCCcceeecc--CCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99999999887 7777754 78999999997 56799999999999998643
No 60
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=223.20 Aligned_cols=280 Identities=14% Similarity=0.185 Sum_probs=232.5
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.+|...|.+++|+-+|..|++|+.|+++.+|++..... .......+|.+.|-.++|.
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~---------------------~~~~~~~gh~~svdql~w~~~ 75 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF---------------------RKELVYRGHTDSVDQLCWDPK 75 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhh---------------------hhhhcccCCCcchhhheeCCC
Confidence 46899999999999999999999999999999876422 1111223789999999999
Q ss_pred -CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEE
Q 003871 516 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 592 (790)
Q Consensus 516 -~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l 592 (790)
...+++++ |.+|++||++++++........+.+ -+.|+|+| ++++++.|..|.+.|.++.+.....+ ....++.+
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~ 153 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEI 153 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeee
Confidence 67888888 9999999999999999887655555 57899999 99999999999999999887766554 44568889
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCcee
Q 003871 593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT 671 (790)
Q Consensus 593 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~ 671 (790)
.|+-++.+++.....|+|.|..... .++++++. .|. ....||.|+|+|+++|+| .|..+.+||+...-++
T Consensus 154 ~w~~~nd~Fflt~GlG~v~ILsyps-----Lkpv~si~-AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~ 224 (313)
T KOG1407|consen 154 SWNNSNDLFFLTNGLGCVEILSYPS-----LKPVQSIK-AHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICE 224 (313)
T ss_pred eecCCCCEEEEecCCceEEEEeccc-----cccccccc-cCC---cceEEEEECCCCceEeeccccceeeccChhHhhhh
Confidence 9998778877777789999988876 35566443 454 578899999999999996 8999999999998888
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEE
Q 003871 672 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 672 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~ 751 (790)
+.+.. +.-+|..+.||.||++||+||+|..|-|=++++|..+..+.. .++-+ .|+||| ...+||-+
T Consensus 225 R~isR--ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~---------~~~t~--tVAWHP-k~~LLAyA 290 (313)
T KOG1407|consen 225 RCISR--LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC---------EGPTF--TVAWHP-KRPLLAYA 290 (313)
T ss_pred eeecc--ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec---------cCCce--eEEecC-CCceeeEE
Confidence 88854 689999999999999999999999999999999998888752 44566 999999 78899988
Q ss_pred eCC---------CcEEEEecC
Q 003871 752 LTN---------GRVHVIEPL 763 (790)
Q Consensus 752 s~D---------g~i~iW~~~ 763 (790)
++| |+++++-+.
T Consensus 291 ~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 291 CDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ecCCCCccccccceeEEecCC
Confidence 765 566666543
No 61
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.8e-27 Score=224.51 Aligned_cols=286 Identities=16% Similarity=0.132 Sum_probs=225.4
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--Cc
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 517 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~ 517 (790)
..+.|.++.|+++|.++++++.|.++++||..++.. ... . ..+.-.|..++|. .+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~--------------------~~t-i--~skkyG~~~~~Fth~~~ 69 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ--------------------VKT-I--NSKKYGVDLACFTHHSN 69 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce--------------------eeE-e--ecccccccEEEEecCCc
Confidence 367899999999999999999999999999877544 111 1 1344567777777 44
Q ss_pred EEEEec---CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEE
Q 003871 518 HLFSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 593 (790)
Q Consensus 518 ~l~s~s---dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~ 593 (790)
.++.++ |.+|+..++.+.+.++.|.||...|++++.+|-+ .+++++.|++|++||++..++...+.. ..-..++
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~A 147 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAA 147 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCccee
Confidence 444444 7899999999999999999999999999999999 999999999999999998877766643 2334578
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceee
Q 003871 594 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 672 (790)
Q Consensus 594 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~ 672 (790)
|.|.|-++|++.....|++||++....-....+. +..+.. ...+.+.|||||++++.+ ..+.+++.|.-+|....
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~-i~~~~~---~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~ 223 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFS-ITDNDE---AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS 223 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCCCCceeEc-cCCCCc---cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee
Confidence 9999999999998889999999974322111121 222222 588999999999999987 77889999999999888
Q ss_pred eecCCCCCC-CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEE
Q 003871 673 QLVPDKMDL-PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 673 ~~~~~~h~~-~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~ 751 (790)
++....... --...+|+||++++++|+.||+|.+|++++|..+..+.. .+..++. ++.|+| .-.++||+
T Consensus 224 tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~-------~~~~~~~--~~~fnP-~~~mf~sa 293 (311)
T KOG1446|consen 224 TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG-------PNGGPVS--CVRFNP-RYAMFVSA 293 (311)
T ss_pred eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC-------CCCCCcc--ccccCC-ceeeeeec
Confidence 887643333 236788999999999999999999999999999998873 2244555 889999 55566655
Q ss_pred eCCCcEEEEecCCCc
Q 003871 752 LTNGRVHVIEPLESE 766 (790)
Q Consensus 752 s~Dg~i~iW~~~~~~ 766 (790)
+..+.+|-+...+
T Consensus 294 --~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 294 --SSNLVFWLPDEDA 306 (311)
T ss_pred --CceEEEEeccccc
Confidence 5679999887543
No 62
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.6e-28 Score=233.46 Aligned_cols=298 Identities=14% Similarity=0.167 Sum_probs=235.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccc---cCCCc-eeeeecccCCCCCCeEEEEe
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLY---QPSSK-LVMTNDIAADPKDSISCFAL 514 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~---~~~~~-~~~~~~~~~~~~~~V~~l~~ 514 (790)
.|.+++.+.+|||||.++++|+.|.+|+|.|++.... ...++-. +...+ -+++.+. .|..+|+++.|
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermla-------ks~~~em~~~~~qa~hPvIRTlY--DH~devn~l~F 180 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLA-------KSKPKEMISGDTQARHPVIRTLY--DHVDEVNDLDF 180 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhh-------hcchhhhccCCcccCCceEeehh--hccCcccceee
Confidence 4999999999999999999999999999999873221 0000000 00011 1233222 69999999999
Q ss_pred c--CcEEEEec-CCeEEEEECCCCcEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEE---cCC
Q 003871 515 R--GSHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGH 585 (790)
Q Consensus 515 s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~--~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l---~~h 585 (790)
+ ...|++++ |++|++||+......+-++ ....+|.++.|+|.| ++++|....++++||+.+-++...- .+|
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence 9 88899999 9999999997543222222 345689999999999 9999999999999999998775433 459
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEE
Q 003871 586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYE 664 (790)
Q Consensus 586 ~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd 664 (790)
++.|+++.+++.|++.++|+.||.|++||--++ +.+.++...|.. ..|.+..|..+|+++++ |.|..+++|.
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~-----rCv~t~~~AH~g--sevcSa~Ftkn~kyiLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN-----RCVRTIGNAHGG--SEVCSAVFTKNGKYILSSGKDSTVKLWE 333 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccH-----HHHHHHHhhcCC--ceeeeEEEccCCeEEeecCCcceeeeee
Confidence 999999999999999999999999999997763 556667777765 78999999999999999 5999999999
Q ss_pred CCCCceeeeecCCCCC---CCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEE
Q 003871 665 APTLNHTSQLVPDKMD---LPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 740 (790)
Q Consensus 665 ~~~~~~~~~~~~~~h~---~~v~~l~~s~dg~~l~sgs~-dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 740 (790)
+.+++++..+.+.+.. .--+...|+....|++.-.+ .+.+.-||.+++..+..+.. || .+.+. .+..
T Consensus 334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl------gH-n~a~R--~i~H 404 (430)
T KOG0640|consen 334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL------GH-NGAVR--WIVH 404 (430)
T ss_pred ecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc------CC-CCCce--EEEe
Confidence 9999999999875322 22355678888888876654 47799999999887666543 77 55677 8999
Q ss_pred ecCCCCEEEEEeCCCcEEEEec
Q 003871 741 HPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 741 sp~d~~~las~s~Dg~i~iW~~ 762 (790)
+| .+.-+++||.|..+|+|--
T Consensus 405 SP-~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 405 SP-VEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred CC-CCCceeeecccceeeeeee
Confidence 99 7899999999999999953
No 63
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.2e-28 Score=268.47 Aligned_cols=323 Identities=17% Similarity=0.184 Sum_probs=243.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceecc--CCCceEeeeccccCCCCceeeeecc-----CCCC
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK--SLEKSVNLKLQLINEPSECRTLLLP-----DNSF 440 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s--~d~~i~iwd~~~~~~~~~~~~~~l~-----~~~h 440 (790)
..+-+|....| .++..+ |||..+ |||+ .|+.++||+.+...+........++ -..|
T Consensus 6 p~wv~H~~~~I------fSIdv~-------pdg~~~----aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h 68 (942)
T KOG0973|consen 6 PTWVNHNEKSI------FSIDVH-------PDGVKF----ATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDH 68 (942)
T ss_pred ccccccCCeeE------EEEEec-------CCceeE----ecCCccccccceeeccccccchhhhhhcccchhheeeccc
Confidence 44556665432 788888 999999 9999 9999999997632211110000011 1359
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEE
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLF 520 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~ 520 (790)
.+.|.|+.|+|||++||+|++|+.|.||....... . =+
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~-------------------------------~-----------~~ 106 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS-------------------------------G-----------TV 106 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcceEEEeeecccCC-------------------------------c-----------cc
Confidence 99999999999999999999999999998653100 0 00
Q ss_pred EecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCC
Q 003871 521 SASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 599 (790)
Q Consensus 521 s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~ 599 (790)
.|+.|. .-+++..++...+.+|+..|..++|+|++ ++++++.|++|.+||..+.+.+..+++|.+.|..+.|.|-|+
T Consensus 107 fgs~g~--~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk 184 (942)
T KOG0973|consen 107 FGSTGG--AKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK 184 (942)
T ss_pred cccccc--ccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccC
Confidence 111000 11344567888999999999999999999 999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE--E-e--CCcEEEEECCCCceeeee
Q 003871 600 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-H--EGQIDVYEAPTLNHTSQL 674 (790)
Q Consensus 600 ~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~--~-~--dg~I~iwd~~~~~~~~~~ 674 (790)
++|+-++|++|++|++.++...+ .+. -+-.+.+....+..+.|||||.+|++ + . -..+.|.+-.+.+.-..+
T Consensus 185 y~ASqsdDrtikvwrt~dw~i~k--~It-~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~L 261 (942)
T KOG0973|consen 185 YFASQSDDRTLKVWRTSDWGIEK--SIT-KPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDL 261 (942)
T ss_pred eeeeecCCceEEEEEcccceeeE--eec-cchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeee
Confidence 99999999999999977643221 111 11122222256888999999999998 3 2 335899998888877777
Q ss_pred cCCCCCCCeEEEEEecC-----CC------------EEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEE
Q 003871 675 VPDKMDLPITYATYSCD-----GK------------CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 737 (790)
Q Consensus 675 ~~~~h~~~v~~l~~s~d-----g~------------~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 737 (790)
.+ |.+++.++.|+|. .+ .+|+|+.|++|.||.....+++.+.. .. .+..| ++
T Consensus 262 vG--H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~--~l-----f~~SI--~D 330 (942)
T KOG0973|consen 262 VG--HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH--NL-----FNKSI--VD 330 (942)
T ss_pred ec--CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh--hh-----hcCce--ee
Confidence 65 7889999999981 11 57899999999999987766655432 11 12344 49
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 738 IAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 738 v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
++|+| ||..|..+|.||+|.+..++..+
T Consensus 331 msWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 331 MSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 99999 89999999999999999998654
No 64
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=6e-29 Score=245.58 Aligned_cols=281 Identities=16% Similarity=0.206 Sum_probs=233.0
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
+.|.+.+..+.|-++...|++|+.|..|++|+...+.. .... ...+..++|+++.|.
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-------------------~~~~--tLaGs~g~it~~d~d~~ 230 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-------------------ELIS--TLAGSLGNITSIDFDSD 230 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchh-------------------hhhh--hhhccCCCcceeeecCC
Confidence 35899999999999988899999999999999775432 0111 122677889999999
Q ss_pred CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEE
Q 003871 516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 593 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~ 593 (790)
+..+++++ |+.+++|++...+...++.+|.+.|+++.|.... .+++|+.|.+|+.||+....+.+++-. ...+++|.
T Consensus 231 ~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~ 309 (459)
T KOG0288|consen 231 NKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIV 309 (459)
T ss_pred CceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceE
Confidence 66666666 9999999999999999999999999999999888 899999999999999998887766542 34566777
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceee
Q 003871 594 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS 672 (790)
Q Consensus 594 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~ 672 (790)
.+ +..+++|-.|++|++||.++...... ++.+ +.|+++..++++..+.+ +.|.++.+.|+++.....
T Consensus 310 ~~--~~~~~SgH~DkkvRfwD~Rs~~~~~s-----v~~g-----g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~ 377 (459)
T KOG0288|consen 310 CS--ISDVISGHFDKKVRFWDIRSADKTRS-----VPLG-----GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ 377 (459)
T ss_pred ec--ceeeeecccccceEEEeccCCceeeE-----eecC-----cceeeEeeccCCeEEeeecCCCceeeeecccccEEE
Confidence 66 45688999999999999998654433 3333 68999999999998888 589999999999988888
Q ss_pred eecCCCC--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEE
Q 003871 673 QLVPDKM--DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 750 (790)
Q Consensus 673 ~~~~~~h--~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las 750 (790)
.+...+. ....+.+.|||++.|+++||.||.|+||++.++++...+... +....|. +++|+| .|..|++
T Consensus 378 ~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s------~s~~aI~--s~~W~~-sG~~Lls 448 (459)
T KOG0288|consen 378 TFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS------TSNAAIT--SLSWNP-SGSGLLS 448 (459)
T ss_pred EeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC------CCCcceE--EEEEcC-CCchhhc
Confidence 7765432 455899999999999999999999999999999999988743 1122455 999999 7999999
Q ss_pred EeCCCcEEEEe
Q 003871 751 GLTNGRVHVIE 761 (790)
Q Consensus 751 ~s~Dg~i~iW~ 761 (790)
++.++.+.+|.
T Consensus 449 adk~~~v~lW~ 459 (459)
T KOG0288|consen 449 ADKQKAVTLWT 459 (459)
T ss_pred ccCCcceEecC
Confidence 99999999994
No 65
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=5.9e-28 Score=244.37 Aligned_cols=294 Identities=19% Similarity=0.244 Sum_probs=224.9
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
+|+..|.++++.|.|..+++|+.|.+|++||++.... ....... +.......|.++.|+ |
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda----------------s~~~fr~--l~P~E~h~i~sl~ys~Tg 226 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA----------------SMRSFRQ--LQPCETHQINSLQYSVTG 226 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccc----------------cchhhhc--cCcccccccceeeecCCC
Confidence 5888999999999999999999999999999986433 1111111 111356678999999 6
Q ss_pred cEEEEec-CCeEEEEECCCCcEEEE------------EcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce-EE
Q 003871 517 SHLFSAS-GGKISIFSLETFQTLAT------------FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KA 580 (790)
Q Consensus 517 ~~l~s~s-dg~I~vwd~~~~~~~~~------------~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~-~~ 580 (790)
..|++.+ ....+++|....+.... .++|...++|.+|+|+. .+++++.||++++||+...+. .+
T Consensus 227 ~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 227 DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 6666665 78999999875433322 25788899999999999 999999999999999976532 33
Q ss_pred EEc-----CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-
Q 003871 581 KLK-----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 654 (790)
Q Consensus 581 ~l~-----~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~- 654 (790)
.++ +..-+++.++|+|||++||+|..||.|.+||..+... .+...+...|.+ ...|+||+||+||++|++
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v---~p~~~vk~AH~~-g~~Itsi~FS~dg~~LlSR 382 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV---RPVMKVKDAHLP-GQDITSISFSYDGNYLLSR 382 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc---ccceEeeeccCC-CCceeEEEeccccchhhhc
Confidence 332 2334789999999999999999999999999865332 233335556651 137999999999999999
Q ss_pred EeCCcEEEEECCCC-ceeeeecCCCCCCCeEEEEEecCCCEEEEEEc------CCeEEEEECCCCeEEEEeccccccCCC
Q 003871 655 IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTSTLELRCQINLTAYAQPG 727 (790)
Q Consensus 655 ~~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~------dg~i~vwd~~~~~~~~~~~~~~~~~~g 727 (790)
|.|+++++||++.. +++....+-....+-+.++|||+.++|++|+. .|.+++||..+-+.+..+...
T Consensus 383 g~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~------ 456 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS------ 456 (641)
T ss_pred cCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC------
Confidence 89999999999864 34555444334567789999999999999875 478999999999988887532
Q ss_pred CcccccceEEEEEecCCCCEEEEEeCCCcEEEE-ecCCC
Q 003871 728 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVI-EPLES 765 (790)
Q Consensus 728 h~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW-~~~~~ 765 (790)
... +..+.||| .=+.+..|+.||+++|+ |....
T Consensus 457 --~aS--vv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 457 --TAS--VVRCLWHP-KLNQIFAGSGDGTAHVYYDPNES 490 (641)
T ss_pred --Cce--EEEEeecc-hhhheeeecCCCceEEEECcccc
Confidence 223 45999999 67788888889999875 55543
No 66
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-27 Score=223.96 Aligned_cols=288 Identities=15% Similarity=0.199 Sum_probs=228.4
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.||+.+++.+.|+.+|..|.+++.|.+..||-..+++ .+-.. .+|.+.|+|+..+
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe---------------------rlGty--~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE---------------------RLGTY--DGHTGAVWCCDIDWD 63 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCCc---------------------eeeee--cCCCceEEEEEecCC
Confidence 4899999999999999999999999999999654432 22222 3899999999999
Q ss_pred CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeC-----CCcEEEEeCC-------CCceEEE
Q 003871 516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-----DSSILVHCPC-------TKKTKAK 581 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~-----dg~I~iwd~~-------~~~~~~~ 581 (790)
...+++|+ |.++++||+++|+++.+++ ...+|..+.|+++| +++...+ .+.|.++|++ ..++...
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 88999999 9999999999999999987 46679999999999 5555543 3579999988 3456777
Q ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcE
Q 003871 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 660 (790)
Q Consensus 582 l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I 660 (790)
+..+...++.+.|.|-+++|++|..||.|..||+++|.. .+. ....|. ..|+.+.++||..+++++ .|.+-
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~----~v~-s~~~h~---~~Ind~q~s~d~T~FiT~s~Dtta 214 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE----LVD-SDEEHS---SKINDLQFSRDRTYFITGSKDTTA 214 (327)
T ss_pred ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce----eee-chhhhc---cccccccccCCcceEEecccCccc
Confidence 888889999999999999999999999999999999642 233 334455 689999999999999995 89999
Q ss_pred EEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe--EEEEECCCCeEEEEeccccc-----cCCCCccccc
Q 003871 661 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH--VKVFDTSTLELRCQINLTAY-----AQPGTISLEL 733 (790)
Q Consensus 661 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~--i~vwd~~~~~~~~~~~~~~~-----~~~gh~~~~v 733 (790)
++||..+.++++++.. ..+|++.+++|-...++.|+.... |.-=+.+.|+....|--..+ -..|| -++|
T Consensus 215 kl~D~~tl~v~Kty~t---e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH-FGPI 290 (327)
T KOG0643|consen 215 KLVDVRTLEVLKTYTT---ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH-FGPI 290 (327)
T ss_pred eeeeccceeeEEEeee---cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc-ccCc
Confidence 9999999999999975 789999999998877777664322 22222233332222110000 02366 6688
Q ss_pred ceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 734 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 734 ~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
+ +++||| +|+..++|++||.||+.....
T Consensus 291 N--svAfhP-dGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 291 N--SVAFHP-DGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred c--eeEECC-CCcccccCCCCceEEEEEecc
Confidence 8 999999 899999999999999986543
No 67
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=3.1e-27 Score=220.86 Aligned_cols=284 Identities=16% Similarity=0.153 Sum_probs=227.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
-.++||..++ +.+.|. .+|.+| .+++.|.+..+|-..+ ...+-.+ .||++.|+++
T Consensus 4 i~l~GHERpl-------TqiKyN-------~eGDLl----FscaKD~~~~vw~s~n---GerlGty----~GHtGavW~~ 58 (327)
T KOG0643|consen 4 ILLQGHERPL-------TQIKYN-------REGDLL----FSCAKDSTPTVWYSLN---GERLGTY----DGHTGAVWCC 58 (327)
T ss_pred cccccCcccc-------ceEEec-------CCCcEE----EEecCCCCceEEEecC---Cceeeee----cCCCceEEEE
Confidence 4567999988 999998 889999 9999999999998753 2333333 3899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEecC-
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG- 524 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~sd- 524 (790)
..+.+.+++++|+.|.++++||+.++++ +.+ . ....+|..+.|+ |++++...|
T Consensus 59 Did~~s~~liTGSAD~t~kLWDv~tGk~--------------------la~-~---k~~~~Vk~~~F~~~gn~~l~~tD~ 114 (327)
T KOG0643|consen 59 DIDWDSKHLITGSADQTAKLWDVETGKQ--------------------LAT-W---KTNSPVKRVDFSFGGNLILASTDK 114 (327)
T ss_pred EecCCcceeeeccccceeEEEEcCCCcE--------------------EEE-e---ecCCeeEEEeeccCCcEEEEEehh
Confidence 9999999999999999999999887654 211 1 367889999999 666665553
Q ss_pred -----CeEEEEECC-------CCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-eEEEEcCCCCCEE
Q 003871 525 -----GKISIFSLE-------TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRIT 590 (790)
Q Consensus 525 -----g~I~vwd~~-------~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~-~~~~l~~h~~~v~ 590 (790)
+.|.++|++ ..++...+..+...++.+-|+|-+ .|++|..||.|.+||+++|. .+..-+.|+..|+
T Consensus 115 ~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~In 194 (327)
T KOG0643|consen 115 QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKIN 194 (327)
T ss_pred hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccc
Confidence 579999997 345677888888999999999999 99999999999999999985 4555677999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eC-CcEEEEECCC
Q 003871 591 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPT 667 (790)
Q Consensus 591 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~d-g~I~iwd~~~ 667 (790)
.+.++||..++++++.|.+-++||+.+-+ .+++.... .+|++.+++|....++.+ .+ ..|.-=+.+.
T Consensus 195 d~q~s~d~T~FiT~s~Dttakl~D~~tl~-----v~Kty~te-----~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~ 264 (327)
T KOG0643|consen 195 DLQFSRDRTYFITGSKDTTAKLVDVRTLE-----VLKTYTTE-----RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRA 264 (327)
T ss_pred cccccCCcceEEecccCccceeeecccee-----eEEEeeec-----ccccceecccccceEEecCCceeeeeeeecccc
Confidence 99999999999999999999999999833 33323222 589999999988777763 22 1233333333
Q ss_pred Cc------------eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003871 668 LN------------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 668 ~~------------~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
|+ .+..++ +|-++|++++|+|+|+..++|++||.|++...+..
T Consensus 265 GKFEArFyh~i~eEEigrvk--GHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 265 GKFEARFYHLIFEEEIGRVK--GHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cchhhhHHHHHHHHHhcccc--ccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 32 233343 47999999999999999999999999999876543
No 68
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.6e-28 Score=226.98 Aligned_cols=289 Identities=13% Similarity=0.140 Sum_probs=238.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
.+..||+.+| -.++||+-. |||-+| ++++.|+.--+-+-+ ++.-.-.. .||.+.|++.
T Consensus 8 l~c~ghtrpv-------vdl~~s~it----p~g~fl----isa~kd~~pmlr~g~----tgdwigtf---eghkgavw~~ 65 (334)
T KOG0278|consen 8 LTCHGHTRPV-------VDLAFSPIT----PDGYFL----ISASKDGKPMLRNGD----TGDWIGTF---EGHKGAVWSA 65 (334)
T ss_pred eEEcCCCcce-------eEEeccCCC----CCceEE----EEeccCCCchhccCC----CCCcEEee---eccCcceeee
Confidence 5667999999 899998434 899999 999999987776654 44443322 3899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-C
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 524 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-d 524 (790)
..+.+....++++.|-+.++||.-++.. +.. ..|..-|.+++|+ .++|++|+ +
T Consensus 66 ~l~~na~~aasaaadftakvw~a~tgde---------------------lhs---f~hkhivk~~af~~ds~~lltgg~e 121 (334)
T KOG0278|consen 66 TLNKNATRAASAAADFTAKVWDAVTGDE---------------------LHS---FEHKHIVKAVAFSQDSNYLLTGGQE 121 (334)
T ss_pred ecCchhhhhhhhcccchhhhhhhhhhhh---------------------hhh---hhhhheeeeEEecccchhhhccchH
Confidence 9999998888999898888887665433 211 1488899999999 78899999 8
Q ss_pred CeEEEEECCCC-cEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEE
Q 003871 525 GKISIFSLETF-QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV 602 (790)
Q Consensus 525 g~I~vwd~~~~-~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~ 602 (790)
..+++||++.. .+...+.+|.+.|..+.|...+ .+++.+.|++|++||.++++.++.+. ...+|+++.+++||++|.
T Consensus 122 kllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 122 KLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILT 200 (334)
T ss_pred HHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEE
Confidence 99999999864 4567788999999999998888 88888999999999999999999887 456899999999998766
Q ss_pred EEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCC
Q 003871 603 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDL 681 (790)
Q Consensus 603 s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~ 681 (790)
++ ..+.|.+||..+-..++...+. ..|.+...+|+...+++| .|..++.||..++..+..+. .+|.+
T Consensus 201 ia-~gssV~Fwdaksf~~lKs~k~P----------~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~g 268 (334)
T KOG0278|consen 201 IA-YGSSVKFWDAKSFGLLKSYKMP----------CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFG 268 (334)
T ss_pred Ee-cCceeEEeccccccceeeccCc----------cccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCC
Confidence 54 5678999999985443333222 578999999998888875 89999999999999988863 35789
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 003871 682 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR 715 (790)
Q Consensus 682 ~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~ 715 (790)
+|.++.|+|||...++||+||+|++|.+..++..
T Consensus 269 pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 269 PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999999999998876543
No 69
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=5.8e-28 Score=238.66 Aligned_cols=285 Identities=15% Similarity=0.108 Sum_probs=233.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
..+..|.+.+ ..+.|- ++...| ++|+.|..|++|++...+ ..... .+ .|..++|+++
T Consensus 169 ~~ld~h~gev-------~~v~~l-------~~sdtl----atgg~Dr~Ik~W~v~~~k--~~~~~-tL--aGs~g~it~~ 225 (459)
T KOG0288|consen 169 FVLDAHEGEV-------HDVEFL-------RNSDTL----ATGGSDRIIKLWNVLGEK--SELIS-TL--AGSLGNITSI 225 (459)
T ss_pred hhhhcccccc-------ceeEEc-------cCcchh----hhcchhhhhhhhhcccch--hhhhh-hh--hccCCCccee
Confidence 5677899998 899998 777888 999999999999997411 11222 12 3567889999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcE-EEEec-C
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH-LFSAS-G 524 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~-l~s~s-d 524 (790)
.|.++++++++++.|+.+++|++..... +.. ..+|++.|+++.|. ++. +++|+ |
T Consensus 226 d~d~~~~~~iAas~d~~~r~Wnvd~~r~---------------------~~T--LsGHtdkVt~ak~~~~~~~vVsgs~D 282 (459)
T KOG0288|consen 226 DFDSDNKHVIAASNDKNLRLWNVDSLRL---------------------RHT--LSGHTDKVTAAKFKLSHSRVVSGSAD 282 (459)
T ss_pred eecCCCceEEeecCCCceeeeeccchhh---------------------hhh--hcccccceeeehhhccccceeecccc
Confidence 9999999999999999999999876433 221 23799999999999 444 99999 9
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEE
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 603 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s 603 (790)
.+|+.||+....|.+++- ....+..++.+ + .+++|..|++|++||.++..+......+. .|+++..+++|..+.+
T Consensus 283 RtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLs 358 (459)
T KOG0288|consen 283 RTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLS 358 (459)
T ss_pred chhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEee
Confidence 999999999988887764 33445566655 5 89999999999999999999998888765 8999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCC
Q 003871 604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLP 682 (790)
Q Consensus 604 ~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~ 682 (790)
++.|.++.+.|+++.+......-..+..+ ...+.+.|||++.|+++| .||.|+||++.++++...+........
T Consensus 359 ssRDdtl~viDlRt~eI~~~~sA~g~k~a-----sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~a 433 (459)
T KOG0288|consen 359 SSRDDTLKVIDLRTKEIRQTFSAEGFKCA-----SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAA 433 (459)
T ss_pred ecCCCceeeeecccccEEEEeeccccccc-----cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcc
Confidence 99999999999999654332222223333 358899999999999995 899999999999999888876543447
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEE
Q 003871 683 ITYATYSCDGKCIYVSCKSGHVKVF 707 (790)
Q Consensus 683 v~~l~~s~dg~~l~sgs~dg~i~vw 707 (790)
|++++|+|.|.+|++++.++.+.+|
T Consensus 434 I~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 434 ITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eEEEEEcCCCchhhcccCCcceEec
Confidence 9999999999999999999999999
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.4e-27 Score=237.01 Aligned_cols=282 Identities=19% Similarity=0.251 Sum_probs=230.6
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--Cc
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 517 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~ 517 (790)
..+.|.+++|||...+=.+....-.+.+|+..+... .... ......|+++.|. |+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~---------------------~k~~--srFk~~v~s~~fR~DG~ 81 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV---------------------RKTF--SRFKDVVYSVDFRSDGR 81 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhh---------------------hhhH--HhhccceeEEEeecCCe
Confidence 357899999999777655555566788888665322 1111 1467889999999 77
Q ss_pred EEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEE
Q 003871 518 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 594 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~ 594 (790)
++++|. .|.|++||+.+...++.+.+|..++..+.|+|++ .+++|++|+.+++||+.+......+.+|++.|.+.+|
T Consensus 82 LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~ 161 (487)
T KOG0310|consen 82 LLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDI 161 (487)
T ss_pred EEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecc
Confidence 888888 7999999987766788889999999999999998 8999999999999999998876689999999999999
Q ss_pred eC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeee
Q 003871 595 SL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 673 (790)
Q Consensus 595 sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~ 673 (790)
+| ++.++++||.||+|++||++... ..+.++. |. .+|.++.+-|.|..++++..+.|++||+.+|...-.
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~----~~v~eln--hg---~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLT----SRVVELN--HG---CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLT 232 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCC----ceeEEec--CC---CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehh
Confidence 99 45689999999999999999832 2222233 33 589999999999999998889999999986654433
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeC
Q 003871 674 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 753 (790)
Q Consensus 674 ~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~ 753 (790)
... .|...|+|+++..++..|++|+-|+.|++||+.+.+.+..+... ++ +++++.+| ++..++.|..
T Consensus 233 ~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---------~p--vLsiavs~-dd~t~viGms 299 (487)
T KOG0310|consen 233 SMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---------GP--VLSIAVSP-DDQTVVIGMS 299 (487)
T ss_pred hhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---------cc--eeeEEecC-CCceEEEecc
Confidence 332 37899999999999999999999999999999999998887642 24 45999999 8899999999
Q ss_pred CCcEEEEecCCCc
Q 003871 754 NGRVHVIEPLESE 766 (790)
Q Consensus 754 Dg~i~iW~~~~~~ 766 (790)
||.+.+=+....+
T Consensus 300 nGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 300 NGLVSIRRREVKK 312 (487)
T ss_pred cceeeeehhhccc
Confidence 9988887554443
No 71
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=3.9e-27 Score=224.14 Aligned_cols=295 Identities=11% Similarity=0.151 Sum_probs=232.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccC-----------CCC---ceeee
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN-----------EPS---ECRTL 433 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~-----------~~~---~~~~~ 433 (790)
..+..|..++ .+.+|+ |||.++ |||+.|..|+|.|++..- ++. .+.+.
T Consensus 106 ~ylt~HK~~c-------R~aafs-------~DG~lv----ATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRT 167 (430)
T KOG0640|consen 106 KYLTSHKSPC-------RAAAFS-------PDGSLV----ATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRT 167 (430)
T ss_pred EEEeecccce-------eeeeeC-------CCCcEE----EccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEee
Confidence 4456799998 999999 999999 999999999999986110 011 11121
Q ss_pred eccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEE
Q 003871 434 LLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 513 (790)
Q Consensus 434 ~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~ 513 (790)
+ ..|.++|.++.|+|....|++++.|++|+++|+..... .+..+. + ....+|.++.
T Consensus 168 -l--YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~sa------------------KrA~K~-~--qd~~~vrsiS 223 (430)
T KOG0640|consen 168 -L--YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSA------------------KRAFKV-F--QDTEPVRSIS 223 (430)
T ss_pred -h--hhccCcccceeecchhheEEeccCCCeEEEEecccHHH------------------HHHHHH-h--hccceeeeEe
Confidence 1 25999999999999999999999999999999875322 001110 1 2567899999
Q ss_pred ec--CcEEEEecC-CeEEEEECCCCcEEEEE---cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcC-C
Q 003871 514 LR--GSHLFSASG-GKISIFSLETFQTLATF---ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-H 585 (790)
Q Consensus 514 ~s--~~~l~s~sd-g~I~vwd~~~~~~~~~~---~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~-h 585 (790)
|+ |.+++.|.| .++++||+++.++...- ..|.+.|+++.+++.| +.++|+.||.|++||--+++++.++.. |
T Consensus 224 fHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH 303 (430)
T KOG0640|consen 224 FHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH 303 (430)
T ss_pred ecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc
Confidence 99 999999994 89999999999887655 3678899999999999 999999999999999998999888853 5
Q ss_pred C-CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccC-CCCCCCCeEEEEEeCCCCEEEEE--eCCcEE
Q 003871 586 Q-NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLSI--HEGQID 661 (790)
Q Consensus 586 ~-~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~-~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~ 661 (790)
. ..|.+..|+.+|+++++.+.|..+++|.+.+++.+ ...... ......--+...|+....+++.- ..+.+.
T Consensus 304 ~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l-----~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slc 378 (430)
T KOG0640|consen 304 GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML-----KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLC 378 (430)
T ss_pred CCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE-----EEEecCCcccchhhhhhhhhcCccceEEccccccCcee
Confidence 4 46999999999999999999999999999996543 312111 11000123445677777777773 567899
Q ss_pred EEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 003871 662 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 662 iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~ 710 (790)
-||.+++..+..+.. +|.+.+..+.-||.+.-+++++.|..+++|--+
T Consensus 379 sWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 379 SWDARTADRVALLSL-GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred eccccchhhhhhccc-CCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 999999887766654 589999999999999999999999999999643
No 72
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.7e-27 Score=246.83 Aligned_cols=263 Identities=19% Similarity=0.248 Sum_probs=222.4
Q ss_pred eeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccc
Q 003871 408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQ 487 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~ 487 (790)
|.|. ...|.+|+.. .+.+..+. ..+.+.|+++.|+++|.+|++|..+|.|.|||......
T Consensus 192 aVal-g~~vylW~~~----s~~v~~l~---~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~------------ 251 (484)
T KOG0305|consen 192 AVAL-GQSVYLWSAS----SGSVTELC---SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK------------ 251 (484)
T ss_pred EEEe-cceEEEEecC----CCceEEeE---ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc------------
Confidence 4443 4789999997 35544433 12478999999999999999999999999999776433
Q ss_pred cccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEECCCCcEEEE-EcCCCCCeEEEEEcCCC-eEEEEeC
Q 003871 488 LYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFD 564 (790)
Q Consensus 488 i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd~~~~~~~~~-~~~~~~~v~~l~~s~~g-~l~sgs~ 564 (790)
... +..+|...|-+++|++..+.+|+ ++.|..+|++..+.... +.+|...|..++|++|+ ++|+|+.
T Consensus 252 --------~~~--~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn 321 (484)
T KOG0305|consen 252 --------TRT--LRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN 321 (484)
T ss_pred --------ccc--ccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC
Confidence 111 11138999999999988999999 99999999998765554 78999999999999999 9999999
Q ss_pred CCcEEEEeCCCCceEEEEcCCCCCEEEEEEeC-CCCEEEEEe--CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeE
Q 003871 565 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 641 (790)
Q Consensus 565 dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~s~s--~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~ 641 (790)
|+.+.|||.....+...+..|..+|.+++|+| ....||+|+ .|+.|++||..++.. +..+..+ +.|.
T Consensus 322 DN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-----i~~vdtg-----sQVc 391 (484)
T KOG0305|consen 322 DNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-----IDSVDTG-----SQVC 391 (484)
T ss_pred ccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-----ecccccC-----Ccee
Confidence 99999999988888899999999999999999 667889865 599999999998653 4434444 6899
Q ss_pred EEEEeCCCCEEEE--E-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003871 642 HIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 642 ~i~~sp~~~~l~~--~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
++.|++..+.|++ | .++.|.||+..+.+.+..+.+ |...|..++++|||..+++|+.|.++++|++-..
T Consensus 392 sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g--H~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 392 SLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG--HTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC--CcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999988887 4 678999999999888888865 7899999999999999999999999999998875
No 73
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=204.12 Aligned_cols=303 Identities=14% Similarity=0.130 Sum_probs=225.5
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc-ccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS-LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~-~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
.+..|.+++|+|.|..-++|+..++++|-....-..+ .++......|. -.+. ....|.+.|+|.+|+ |
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~------v~~k---r~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPS------VLCK---RNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCe------EEee---eccccCccEEEEEecCcc
Confidence 4678999999999998889999999998765542221 12222111111 1111 223689999999999 9
Q ss_pred cEEEEec-CCeEEEEECCCCcEE-----EEEcCCCCCeEEEEEcCC----C-eEEEEe-CCCcEEEEeCCCCceEEEEcC
Q 003871 517 SHLFSAS-GGKISIFSLETFQTL-----ATFANPPPIATYFILLPQ----D-LFAFGF-DDSSILVHCPCTKKTKAKLKG 584 (790)
Q Consensus 517 ~~l~s~s-dg~I~vwd~~~~~~~-----~~~~~~~~~v~~l~~s~~----g-~l~sgs-~dg~I~iwd~~~~~~~~~l~~ 584 (790)
+++++|+ |.+|++..+....+. ..+.-|.+.|..++|-.+ | .+++++ .|..|++-|..+|+..+.+.+
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG 181 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence 9999999 899999877543322 345678999999999644 2 666654 567899999999999999999
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEE
Q 003871 585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 663 (790)
Q Consensus 585 h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iw 663 (790)
|++-|.++ ++-+|-++++|+.|.+|++||++-...+. .+.+-..+..-.+..|.+++..|.|++|++| .|....+|
T Consensus 182 htghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~--~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 182 HTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVN--TLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred CcccEEEE-EEecCcEEEccCCCceEEEEeeeccceee--eccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 99999887 56678899999999999999998733221 1211111110012579999999999999998 89999999
Q ss_pred ECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecC
Q 003871 664 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 743 (790)
Q Consensus 664 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~ 743 (790)
|++.++.++.+.+ |...|.++.|||...|+++++.|..|++-|+... +.+.+.. ... +.|.+. .+.+.|+|
T Consensus 259 dirg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~--~vv-~ehkdk--~i~~rwh~- 329 (350)
T KOG0641|consen 259 DIRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPI--MVV-AEHKDK--AIQCRWHP- 329 (350)
T ss_pred EeeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCce--EEE-EeccCc--eEEEEecC-
Confidence 9999999999965 7999999999999999999999999999998753 1111110 000 222333 44899999
Q ss_pred CCCEEEEEeCCCcEEEEecC
Q 003871 744 EPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 744 d~~~las~s~Dg~i~iW~~~ 763 (790)
..--+++.+.|.++.+|-+.
T Consensus 330 ~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 330 QDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccceeeeccCcceEEEeccC
Confidence 55667888999999999764
No 74
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=1.7e-25 Score=226.09 Aligned_cols=372 Identities=13% Similarity=0.124 Sum_probs=276.0
Q ss_pred ccccCccccchhhhhhhhccCCCccccccccCCC-----------CCCCcceeeeccCCCcccccccccCCCCCCCCCCC
Q 003871 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL 375 (790)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd-----------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~ 375 (790)
..++|||..+-..+..+..-...|. |++||+- +.++.+. +||.+.+... ...+.-+.
T Consensus 134 phvriWdsv~L~TL~V~g~f~~GV~--~vaFsk~~~G~~l~~vD~s~~h~lS--VWdWqk~~~~--------~~vk~sne 201 (626)
T KOG2106|consen 134 PHVRIWDSVTLSTLHVIGFFDRGVT--CVAFSKINGGSLLCAVDDSNPHMLS--VWDWQKKAKL--------GPVKTSNE 201 (626)
T ss_pred Ceeeecccccceeeeeeccccccce--eeeecccCCCceEEEecCCCccccc--hhhchhhhcc--------Ccceeccc
Confidence 5688898877777777776566666 9999986 7888899 8998888765 44444455
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCE
Q 003871 376 DASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF 455 (790)
Q Consensus 376 ~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~ 455 (790)
.| ....|. |.+.-+ +++++. +.+..|+... .....+.-+.+......|.|++|.++|.
T Consensus 202 ~v-------~~a~FH-------Ptd~nl---iit~Gk-~H~~Fw~~~~---~~l~k~~~~fek~ekk~Vl~v~F~engd- 259 (626)
T KOG2106|consen 202 VV-------FLATFH-------PTDPNL---IITCGK-GHLYFWTLRG---GSLVKRQGIFEKREKKFVLCVTFLENGD- 259 (626)
T ss_pred eE-------EEEEec-------cCCCcE---EEEeCC-ceEEEEEccC---CceEEEeeccccccceEEEEEEEcCCCC-
Confidence 55 788898 767666 256655 9999999874 2222222221112236799999999998
Q ss_pred EEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEec-CCeEEEEECC
Q 003871 456 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLE 533 (790)
Q Consensus 456 l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~ 533 (790)
+++|.++|.|.||+..+... .+... .|++.|.+++.- +..|++|+ |..|..|| .
T Consensus 260 viTgDS~G~i~Iw~~~~~~~---------------------~k~~~--aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~ 315 (626)
T KOG2106|consen 260 VITGDSGGNILIWSKGTNRI---------------------SKQVH--AHDGGVFSLCMLRDGTLLSGGKDRKIILWD-D 315 (626)
T ss_pred EEeecCCceEEEEeCCCceE---------------------EeEee--ecCCceEEEEEecCccEeecCccceEEecc-c
Confidence 88999999999998654321 11111 699999999999 77777788 99999999 4
Q ss_pred CCcEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcE
Q 003871 534 TFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 610 (790)
Q Consensus 534 ~~~~~~~~~--~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I 610 (790)
.-+.++..+ ...++|+.++ +.+ -+++|...+.|..=.+.++-.+ ...+|......++.+|+.+.+++++.|+.+
T Consensus 316 ~y~k~r~~elPe~~G~iRtv~--e~~~di~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v 392 (626)
T KOG2106|consen 316 NYRKLRETELPEQFGPIRTVA--EGKGDILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHV 392 (626)
T ss_pred cccccccccCchhcCCeeEEe--cCCCcEEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhheeeccCcceE
Confidence 444444443 3345677766 334 5777887777776666655433 445799999999999999999999999999
Q ss_pred EEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEe
Q 003871 611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 689 (790)
Q Consensus 611 ~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s 689 (790)
++|+ ..+....+.+. .++.++.|+|.| .+|+| ..|...+.|.++...+..-. ...+++.++|+
T Consensus 393 ~lW~--~~k~~wt~~~~----------d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~---d~~~ls~v~ys 456 (626)
T KOG2106|consen 393 RLWN--DHKLEWTKIIE----------DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT---DNEQLSVVRYS 456 (626)
T ss_pred EEcc--CCceeEEEEec----------CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe---cCCceEEEEEc
Confidence 9999 32333333322 589999999999 78876 88999999999865554432 27899999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCe-EEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 690 CDGKCIYVSCKSGHVKVFDTSTLE-LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 690 ~dg~~l~sgs~dg~i~vwd~~~~~-~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
|+|.+||.|+.|+.|++|.+..+. ......- ++...|. .+.|++ |+++|.+-+.|-.|-.|.+...
T Consensus 457 p~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k-------~~gs~it--hLDwS~-Ds~~~~~~S~d~eiLyW~~~~~ 523 (626)
T KOG2106|consen 457 PDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK-------CSGSPIT--HLDWSS-DSQFLVSNSGDYEILYWKPSEC 523 (626)
T ss_pred CCCCEEEEecCCCeEEEEEECCCCcEEEEeee-------ecCceeE--EeeecC-CCceEEeccCceEEEEEccccC
Confidence 999999999999999999987654 3333321 2234555 999999 8999999999999999966544
No 75
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.8e-26 Score=241.76 Aligned_cols=389 Identities=14% Similarity=0.131 Sum_probs=275.9
Q ss_pred hhhhccCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 321 SLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 393 (790)
Q Consensus 321 ~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~ 393 (790)
..+-||+++|. ++.|+|+ +.|+++. +|...+..-++...... -...|..... +...|+
T Consensus 261 all~GHeDWV~--sv~W~p~~~~LLSASaDksmi--iW~pd~~tGiWv~~vRl-Ge~gg~a~GF-------~g~lw~--- 325 (764)
T KOG1063|consen 261 ALLMGHEDWVY--SVWWHPEGLDLLSASADKSMI--IWKPDENTGIWVDVVRL-GEVGGSAGGF-------WGGLWS--- 325 (764)
T ss_pred hhhcCcccceE--EEEEccchhhheecccCcceE--EEecCCccceEEEEEEe-ecccccccce-------eeEEEc---
Confidence 44669999987 9999998 8999999 77655442111000000 2233444455 788898
Q ss_pred CCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 003871 394 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 473 (790)
Q Consensus 394 ~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~ 473 (790)
|++..+ ++-+..|..++|...+ ........+. .||.+.|..++|+|.|.+|+++|.|.+-|++-.-..
T Consensus 326 ----~n~~~i----i~~g~~Gg~hlWkt~d---~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~ 393 (764)
T KOG1063|consen 326 ----PNSNVI----IAHGRTGGFHLWKTKD---KTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR 393 (764)
T ss_pred ----CCCCEE----EEecccCcEEEEeccC---ccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeeccccc
Confidence 889888 9999999999999432 3444333333 489999999999999999999999999999864311
Q ss_pred CccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEecC-CeEEEEECCC----------------
Q 003871 474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG-GKISIFSLET---------------- 534 (790)
Q Consensus 474 ~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~sd-g~I~vwd~~~---------------- 534 (790)
+. -|. ..-.++-|...++|+++- ...+++|.| ..+++|+...
T Consensus 394 q~------------~wH-------EiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~ 454 (764)
T KOG1063|consen 394 QQ------------EWH-------EIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKG 454 (764)
T ss_pred cc------------cee-------eecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccC
Confidence 11 021 111122477888888888 345666664 6678876421
Q ss_pred ---------------------------CcE---------------------------------EEEEcCCCCCeEEEEEc
Q 003871 535 ---------------------------FQT---------------------------------LATFANPPPIATYFILL 554 (790)
Q Consensus 535 ---------------------------~~~---------------------------------~~~~~~~~~~v~~l~~s 554 (790)
|.. ++++-+|...|.+++.+
T Consensus 455 ~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s 534 (764)
T KOG1063|consen 455 SDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAIS 534 (764)
T ss_pred chhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEec
Confidence 000 01223678889999999
Q ss_pred CCC-eEEEEeCCC-----cEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeee
Q 003871 555 PQD-LFAFGFDDS-----SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628 (790)
Q Consensus 555 ~~g-~l~sgs~dg-----~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~ 628 (790)
|+| .+|+++... .|++|+..+-..++.+.+|+-.|+.++|||||++|++.+.|+++.+|......... ....
T Consensus 535 ~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-~~fa- 612 (764)
T KOG1063|consen 535 PTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-FRFA- 612 (764)
T ss_pred CCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh-hhhc-
Confidence 999 999987654 68999998888888999999999999999999999999999999999986532211 1122
Q ss_pred eccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCC--ceeeeecCCCCCCCeEEEEEec-----CCCEEEEEEc
Q 003871 629 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSC-----DGKCIYVSCK 700 (790)
Q Consensus 629 ~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~--~~~~~~~~~~h~~~v~~l~~s~-----dg~~l~sgs~ 700 (790)
....|. ..|++..|+|++.++++ +.|.+|++|..... +.+..+....++.+|+.++|.| .+..++.|-+
T Consensus 613 ~~k~Ht---RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle 689 (764)
T KOG1063|consen 613 CLKAHT---RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLE 689 (764)
T ss_pred cccccc---eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEec
Confidence 234565 68999999999999999 59999999999877 5555544445689999999986 2337788999
Q ss_pred CCeEEEEECCCCeEE-----EEeccccccCCCCcccccceEEEEEecCC---------CCEEEEEeCCCcEEEEecC
Q 003871 701 SGHVKVFDTSTLELR-----CQINLTAYAQPGTISLELYPLVIAAHPLE---------PNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 701 dg~i~vwd~~~~~~~-----~~~~~~~~~~~gh~~~~v~~~~v~~sp~d---------~~~las~s~Dg~i~iW~~~ 763 (790)
.|.|.+|....-... ..+.. ...+.+.+...|+ .+.|.|.. ...|++|++|..+||+++.
T Consensus 690 ~GeI~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~aV~--rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 690 KGEIVLWRRKREHRQVTVGTFNLDT-RLCATIGPDSAVN--RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccEEEEEecccccccccceeeeecc-ccccccChHHhhh--eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 999999996621111 11111 1111122355677 89999842 2247999999999999864
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=3.9e-26 Score=250.30 Aligned_cols=276 Identities=20% Similarity=0.209 Sum_probs=232.9
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
.+..|. +.++ ++++.|+++++||... +......+ .||.+.|+++++..-+.++++|+.|.+
T Consensus 212 ~~~q~~---------~~~~----~~~s~~~tl~~~~~~~----~~~i~~~l--~GH~g~V~~l~~~~~~~~lvsgS~D~t 272 (537)
T KOG0274|consen 212 LCLQLH---------DGFF----KSGSDDSTLHLWDLNN----GYLILTRL--VGHFGGVWGLAFPSGGDKLVSGSTDKT 272 (537)
T ss_pred hhheee---------cCeE----EecCCCceeEEeeccc----ceEEEeec--cCCCCCceeEEEecCCCEEEEEecCCc
Confidence 777776 6677 9999999999999973 44433323 489999999999988889999999999
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEECCCCcEEEEEcC
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFAN 543 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~ 543 (790)
+++||..++.+ .... .+|.+.|.++...+..+++|+ |.+|++|++.++.++..+.+
T Consensus 273 ~rvWd~~sg~C---------------------~~~l--~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~ 329 (537)
T KOG0274|consen 273 ERVWDCSTGEC---------------------THSL--QGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRG 329 (537)
T ss_pred EEeEecCCCcE---------------------EEEe--cCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEecc
Confidence 99999776543 3322 279999999998888888988 99999999999999999999
Q ss_pred CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Q 003871 544 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 622 (790)
Q Consensus 544 ~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~ 622 (790)
|..+|.++..+ + .+++|+.|++|.+||+.++++++.+.+|..+|.++.+.+. +.+++|+.|++|++||+++..
T Consensus 330 h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--- 403 (537)
T KOG0274|consen 330 HTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--- 403 (537)
T ss_pred ccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh---
Confidence 99999999987 5 9999999999999999999999999999999999988765 799999999999999999942
Q ss_pred ceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC
Q 003871 623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 701 (790)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d 701 (790)
+.+. ...+|. .-+..+.+ .+++|+++ .|++|++||..++++++++.+. |...|..+++. ...+++++.|
T Consensus 404 -~c~~-tl~~h~---~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~ 473 (537)
T KOG0274|consen 404 -KCIH-TLQGHT---SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDD 473 (537)
T ss_pred -hhhh-hhcCCc---cccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecC
Confidence 3444 444555 45544444 46688885 8999999999999999999764 56788888876 4678899999
Q ss_pred CeEEEEECCCCeEEEEe
Q 003871 702 GHVKVFDTSTLELRCQI 718 (790)
Q Consensus 702 g~i~vwd~~~~~~~~~~ 718 (790)
|.+++||++++++...+
T Consensus 474 ~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 474 GSVKLWDLRSGTLIRTL 490 (537)
T ss_pred CeeEEEecccCchhhhh
Confidence 99999999999988765
No 77
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.5e-27 Score=217.69 Aligned_cols=237 Identities=15% Similarity=0.179 Sum_probs=195.0
Q ss_pred CCCCeEEEEec---CcEEEEec-CCeEEEEECCC-CcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc
Q 003871 505 PKDSISCFALR---GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK 577 (790)
Q Consensus 505 ~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~-~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~ 577 (790)
-.+.+..++|+ .+.+++++ ||++++||... ..++..++.|...|.++.|++.. .++++|.|++|++|+...++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 56788999999 56666666 99999999643 46788889999999999999887 88888999999999999999
Q ss_pred eEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCC-EEEEE
Q 003871 578 TKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI 655 (790)
Q Consensus 578 ~~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~ 655 (790)
.+.++.||...|...+|+| .++.++++|.|+++++||++... +.+. ++ .|. ..|.++.|+.-.. .+++|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g----k~~~-i~-ah~---~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG----KFMS-IE-AHN---SEILCCDWSKYNHNVLATG 209 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC----ceeE-EE-ecc---ceeEeecccccCCcEEEec
Confidence 9999999999999999999 68899999999999999998732 2222 32 344 5899999998654 45555
Q ss_pred -eCCcEEEEECCCCc-eeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCe-EEEEeccccccCCCCccc
Q 003871 656 -HEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLE-LRCQINLTAYAQPGTISL 731 (790)
Q Consensus 656 -~dg~I~iwd~~~~~-~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~dg~i~vwd~~~~~-~~~~~~~~~~~~~gh~~~ 731 (790)
.|+.|+.||+++.+ ++..+ .+|...|+.+.|||.. ..|++++.|-+++|||...+. .+.+.. ||..
T Consensus 210 ~vd~~vr~wDir~~r~pl~eL--~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~--------~HtE 279 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTPLFEL--NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD--------HHTE 279 (311)
T ss_pred CCCceEEEEehhhccccceee--cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh--------ccce
Confidence 89999999998755 45555 3579999999999964 588999999999999998654 333332 4455
Q ss_pred ccceEEEEEecCCCCEEEEEeCCCcEEEEec
Q 003871 732 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 732 ~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
-+. .+.|++-++.++|+++.|+.++||++
T Consensus 280 Fv~--g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 280 FVC--GLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEe--ccccccccCceeeecccccceeeecc
Confidence 455 89999988899999999999999986
No 78
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=242.36 Aligned_cols=321 Identities=12% Similarity=0.055 Sum_probs=241.1
Q ss_pred CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCcccceeccCCCc
Q 003871 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN-----DNNQSRESTSLPDADSAVCAKSLEK 415 (790)
Q Consensus 341 ~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs-----~~~~~~s~dg~~la~~~at~s~d~~ 415 (790)
-.|+.++ |||++.-..+- .-..+--|...| |.+.-. +++...-|.|- + +|++.|++
T Consensus 343 YndhSlY--vWDvrD~~kvg-----k~~s~lyHS~ci-------W~Ve~~p~nv~~~~~aclp~~c-F----~TCSsD~T 403 (1080)
T KOG1408|consen 343 YNDHSLY--VWDVRDVNKVG-----KCSSMLYHSACI-------WDVENLPCNVHSPTAACLPRGC-F----TTCSSDGT 403 (1080)
T ss_pred EcCceEE--EEecccccccc-----ceeeeeecccee-------eeeccccccccCcccccCCccc-e----eEecCCCc
Confidence 6789999 99997655431 113344687777 766543 12222233333 3 89999999
Q ss_pred eEeeeccccCCCCcee---------eeec-------------c--------CCCCCCceEEEEEcCCCCEEEEEeCCCcE
Q 003871 416 SVNLKLQLINEPSECR---------TLLL-------------P--------DNSFGGRVVRLIYSHSGDFLVALTQTATH 465 (790)
Q Consensus 416 i~iwd~~~~~~~~~~~---------~~~l-------------~--------~~~h~~~V~~l~~spdg~~l~s~~~dg~i 465 (790)
||+|+++........+ ++.. + .-+....+.+++.||+|++||+|..-|.+
T Consensus 404 IRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnl 483 (1080)
T KOG1408|consen 404 IRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNL 483 (1080)
T ss_pred EEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCce
Confidence 9999997421111100 0000 0 01234579999999999999999999999
Q ss_pred EEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-----CcEEEEec-CCeEEEEECCC-CcEE
Q 003871 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLET-FQTL 538 (790)
Q Consensus 466 ~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-----~~~l~s~s-dg~I~vwd~~~-~~~~ 538 (790)
+||+++.-.. ....+.|...|.|+.|+ .++|++++ |.-|++||+.. ...+
T Consensus 484 rVy~Lq~l~~-----------------------~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~ 540 (1080)
T KOG1408|consen 484 RVYDLQELEY-----------------------TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV 540 (1080)
T ss_pred EEEEehhhhh-----------------------hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchh
Confidence 9999986433 22334799999999999 67899999 99999999965 4667
Q ss_pred EEEcCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCceEEEEcCC-----CCCEEEEEEeCCCCEEEEEeCCCcE
Q 003871 539 ATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGH-----QNRITCLAYSLSLNVLVSSGADAQL 610 (790)
Q Consensus 539 ~~~~~~~~~v~~l~~s~~g---~l~sgs~dg~I~iwd~~~~~~~~~l~~h-----~~~v~~l~~spdg~~l~s~s~dg~I 610 (790)
.++.+|...|+++.|.-.| .+++++.|+.|.+--.+.......+..| ...+..++..|..+++++++.|+.|
T Consensus 541 qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrni 620 (1080)
T KOG1408|consen 541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNI 620 (1080)
T ss_pred hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccce
Confidence 7889999999999998887 8899999998765433211111222222 3468899999999999999999999
Q ss_pred EEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEe
Q 003871 611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 689 (790)
Q Consensus 611 ~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s 689 (790)
+|||+.+|+..+. ++ -..+|. +....+...|.|-|++++ .|.++.++|..+|+++.+..+ |...|+.+.|.
T Consensus 621 rif~i~sgKq~k~--FK-gs~~~e---G~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G--HsE~VTG~kF~ 692 (1080)
T KOG1408|consen 621 RIFDIESGKQVKS--FK-GSRDHE---GDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG--HSEAVTGVKFL 692 (1080)
T ss_pred EEEeccccceeee--ec-ccccCC---CceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC--cchheeeeeec
Confidence 9999999765332 11 222333 678889999999999995 999999999999999999876 79999999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCC
Q 003871 690 CDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 690 ~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
+|.+.|++.+.||.|.||.+..
T Consensus 693 nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccchhheeecCCceEEEEECch
Confidence 9999999999999999999864
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-25 Score=215.13 Aligned_cols=246 Identities=16% Similarity=0.172 Sum_probs=205.6
Q ss_pred CCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeC--CCcEEEEeCCCCce
Q 003871 505 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKT 578 (790)
Q Consensus 505 ~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~--dg~I~iwd~~~~~~ 578 (790)
....|.++.|+ |.++++++ |..+++||..+++.++++..+...+..++|.... .++.++. |.+|+..++.+.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 57889999999 88888877 8899999999999999999888889888887777 6666665 88999999999999
Q ss_pred EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eC
Q 003871 579 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 657 (790)
Q Consensus 579 ~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d 657 (790)
++.|.||...|+++..+|-+..+++++.|++|++||++..+......+ ..-..++|+|+|-++|++ ..
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-----------~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-----------SGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-----------CCCcceeECCCCcEEEEecCC
Confidence 999999999999999999889999999999999999997443322111 133468999999999997 44
Q ss_pred CcEEEEECCCC--ceeeeecCC-CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccc
Q 003871 658 GQIDVYEAPTL--NHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 734 (790)
Q Consensus 658 g~I~iwd~~~~--~~~~~~~~~-~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 734 (790)
+.|++||++.- .+..++... ......+.+.|||||++|+.++..+.+++.|.-+|.....+..+ ....-.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~-------~~~~~~ 234 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGY-------PNAGNL 234 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeec-------cCCCCc
Confidence 48999999853 345555443 23677899999999999999999999999999999988888743 222222
Q ss_pred eEEEEEecCCCCEEEEEeCCCcEEEEecCCCcccc
Q 003871 735 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 769 (790)
Q Consensus 735 ~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w 769 (790)
++..+|.| |++++.+|+.||+|.+|++.+|...-
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEee
Confidence 46899999 89999999999999999999998663
No 80
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.2e-26 Score=216.69 Aligned_cols=246 Identities=18% Similarity=0.208 Sum_probs=208.0
Q ss_pred eeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEe
Q 003871 497 MTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHC 572 (790)
Q Consensus 497 ~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g---~l~sgs~dg~I~iwd 572 (790)
.+.+....|.++|++++.++.++|+|+ |.+|++||+.+...+..+..|.+.|+++.|.+.- .|++|+.||.|.+|+
T Consensus 34 ~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred eccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 333344579999999999999999999 9999999999999899999999999999999876 899999999999999
Q ss_pred CCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEE
Q 003871 573 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 652 (790)
Q Consensus 573 ~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l 652 (790)
...-.++..+++|.+.|+.++.+|.|++-++.+.|+.++.||+-.|+.-....+. ...+.+.|+|.|.++
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~----------~~at~v~w~~~Gd~F 183 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK----------NKATLVSWSPQGDHF 183 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC----------CcceeeEEcCCCCEE
Confidence 9999999999999999999999999999999999999999999887654333333 245569999999999
Q ss_pred EEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccc
Q 003871 653 LSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 732 (790)
Q Consensus 653 ~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~ 732 (790)
+++..+.|-+|.+.+......+.. ...+.++.|. ++.+|++|++|+.|.+||.+++.+...+. +| ...
T Consensus 184 ~v~~~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH-~~R 251 (362)
T KOG0294|consen 184 VVSGRNKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AH-ENR 251 (362)
T ss_pred EEEeccEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cc-hhh
Confidence 998778899999988777666643 4557777775 56789999999999999999988888776 44 456
Q ss_pred cceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 733 LYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 733 v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
|..+..--.| ++.+|+|+|.||.|+|||+...
T Consensus 252 VK~i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 252 VKDIASYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeeEEEecC-CceEEEEeccCceEEEEEcccc
Confidence 7733333456 7889999999999999998765
No 81
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.9e-26 Score=241.46 Aligned_cols=444 Identities=17% Similarity=0.202 Sum_probs=303.8
Q ss_pred cccccccc-cchhhhhc-hhh---hhcC-------------ccc---c--ccccCccccchh--hhhhhhccCCCccccc
Q 003871 280 KLPSDFAE-RAHLFDDF-KVL---VERN-------------PML---Q--DKLKFPSMDKSR--LLSLIKQIMDWWVPYC 334 (790)
Q Consensus 280 ~l~s~~~d-~v~l~~~~-~~~---~~~~-------------~~l---a--~~i~iwd~~~~~--~~~~l~~h~~~v~v~~ 334 (790)
+++||+.| ++.+|... ..+ .++. ... | +.+.+||.+..+ +...+.-..+.....|
T Consensus 71 ~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLc 150 (764)
T KOG1063|consen 71 EMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLC 150 (764)
T ss_pred eEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHH
Confidence 67788888 88888743 211 1111 111 1 899999995555 3333333323222348
Q ss_pred cccCCC---------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 003871 335 INVMPN---------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDAD 405 (790)
Q Consensus 335 i~fspd---------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~ 405 (790)
+++.|+ +.+..|. ++.-.+++. +....+.||.+.| .+++|.-.. .|.-++
T Consensus 151 L~~~~~~~~~lla~Ggs~~~v~--~~s~~~d~f------~~v~el~GH~DWI-------rsl~f~~~~----~~~~~l-- 209 (764)
T KOG1063|consen 151 LAALKNNKTFLLACGGSKFVVD--LYSSSADSF------ARVAELEGHTDWI-------RSLAFARLG----GDDLLL-- 209 (764)
T ss_pred HhhhccCCcEEEEecCcceEEE--EeccCCcce------eEEEEeeccchhh-------hhhhhhccC----CCcEEE--
Confidence 888886 5555555 554433321 2227889999999 999997111 122355
Q ss_pred cceeccCCCceEeeeccccCCCC-----------------ce-----eeeecc--CCCCCCceEEEEEcCCCCEEEEEeC
Q 003871 406 SAVCAKSLEKSVNLKLQLINEPS-----------------EC-----RTLLLP--DNSFGGRVVRLIYSHSGDFLVALTQ 461 (790)
Q Consensus 406 ~~at~s~d~~i~iwd~~~~~~~~-----------------~~-----~~~~l~--~~~h~~~V~~l~~spdg~~l~s~~~ 461 (790)
|++|.|..||||.+....... .+ .++.+. -.||.+.|.++.|+|.+..|++++.
T Consensus 210 --aS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa 287 (764)
T KOG1063|consen 210 --ASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA 287 (764)
T ss_pred --EecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheeccc
Confidence 999999999999975321001 00 001110 1489999999999999999999999
Q ss_pred CCcEEEEecCCCCc---------cccccccccc-------------------cccccC-CCceeeeecccCCCCCCeEEE
Q 003871 462 TATHKLWKWQSNKQ---------SLEEENVNME-------------------SQLYQP-SSKLVMTNDIAADPKDSISCF 512 (790)
Q Consensus 462 dg~i~vw~~~~~~~---------~~g~~~~~~~-------------------~~i~~~-~~~~~~~~~~~~~~~~~V~~l 512 (790)
|.++.+|......- ..|.....+. -++|.. +.....+.....||.+.|.++
T Consensus 288 DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv 367 (764)
T KOG1063|consen 288 DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDV 367 (764)
T ss_pred CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceee
Confidence 99999999876532 1111111111 156652 223344444556899999999
Q ss_pred Eec--CcEEEEec-CCeEEEEECCCC----cEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC----------
Q 003871 513 ALR--GSHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---------- 574 (790)
Q Consensus 513 ~~s--~~~l~s~s-dg~I~vwd~~~~----~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~---------- 574 (790)
+|. |+++++.+ |.+-+++-.-.. ..+.+-+-|...++|+++-+.. .+++|.+...+++|+..
T Consensus 368 ~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i 447 (764)
T KOG1063|consen 368 DWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAI 447 (764)
T ss_pred eecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHH
Confidence 999 99999999 999999865411 1223334677889999998867 99999999999999753
Q ss_pred ---------------------------------CCc---------------------------------eEEEEcCCCCC
Q 003871 575 ---------------------------------TKK---------------------------------TKAKLKGHQNR 588 (790)
Q Consensus 575 ---------------------------------~~~---------------------------------~~~~l~~h~~~ 588 (790)
+|. .++++-||...
T Consensus 448 ~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyE 527 (764)
T KOG1063|consen 448 CGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYE 527 (764)
T ss_pred hCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCcee
Confidence 000 01134478889
Q ss_pred EEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEE
Q 003871 589 ITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDV 662 (790)
Q Consensus 589 v~~l~~spdg~~l~s~s~dg-----~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~i 662 (790)
|.+++.+|+|+++|+++... .|++|+..++... + ...+|+ -.|+.++|||||++|++ +.|+++.+
T Consensus 528 v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~-----~-~L~~Hs---LTVT~l~FSpdg~~LLsvsRDRt~sl 598 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV-----Q-ELEGHS---LTVTRLAFSPDGRYLLSVSRDRTVSL 598 (764)
T ss_pred EEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh-----h-eecccc---eEEEEEEECCCCcEEEEeecCceEEe
Confidence 99999999999999998654 5899999885432 2 233566 68999999999999998 79999999
Q ss_pred EECCCCcee-eee-cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEeccccccCCCCcccccceEEE
Q 003871 663 YEAPTLNHT-SQL-VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL--ELRCQINLTAYAQPGTISLELYPLVI 738 (790)
Q Consensus 663 wd~~~~~~~-~~~-~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~--~~~~~~~~~~~~~~gh~~~~v~~~~v 738 (790)
|........ ..+ ....|..-|++..|+|++++++|+|.|.+|++|..... +.+..+... .+ +..|+ ++
T Consensus 599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~-----~~-~~aVT--Av 670 (764)
T KOG1063|consen 599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACL-----KF-SLAVT--AV 670 (764)
T ss_pred eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchh-----cc-CCcee--eE
Confidence 998543221 111 02357888999999999999999999999999999887 333332211 11 44566 88
Q ss_pred EEecCCCC----EEEEEeCCCcEEEEecC
Q 003871 739 AAHPLEPN----RIALGLTNGRVHVIEPL 763 (790)
Q Consensus 739 ~~sp~d~~----~las~s~Dg~i~iW~~~ 763 (790)
+|.|.+.+ .++.|-..|.|.+|...
T Consensus 671 ~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 671 AYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EeeccccccccceEEEEecccEEEEEecc
Confidence 88875544 78888899999999965
No 82
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=2.2e-26 Score=245.76 Aligned_cols=387 Identities=15% Similarity=0.131 Sum_probs=297.4
Q ss_pred cccccccc-cchhhh-hchhhh-hcC---------------cccc-----ccccCccccchhhhhhhhccCCCccccccc
Q 003871 280 KLPSDFAE-RAHLFD-DFKVLV-ERN---------------PMLQ-----DKLKFPSMDKSRLLSLIKQIMDWWVPYCIN 336 (790)
Q Consensus 280 ~l~s~~~d-~v~l~~-~~~~~~-~~~---------------~~la-----~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~ 336 (790)
.+..|+.+ ++.+|| .+++.+ +++ ..+| |+|.++|+..++.+.+++...+.|+ +++
T Consensus 174 KIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vt--slS 251 (910)
T KOG1539|consen 174 KIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVT--SLS 251 (910)
T ss_pred eEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcccccee--EEE
Confidence 44455666 778888 455433 222 4444 9999999999999999988767777 999
Q ss_pred cCCC--------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccce
Q 003871 337 VMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAV 408 (790)
Q Consensus 337 fspd--------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~a 408 (790)
|.-| +..|.+. +||++....+. .....|.+.+ ....|- |....+ +
T Consensus 252 FrtDG~p~las~~~~G~m~--~wDLe~kkl~~-------v~~nah~~sv-------~~~~fl-------~~epVl----~ 304 (910)
T KOG1539|consen 252 FRTDGNPLLASGRSNGDMA--FWDLEKKKLIN-------VTRNAHYGSV-------TGATFL-------PGEPVL----V 304 (910)
T ss_pred eccCCCeeEEeccCCceEE--EEEcCCCeeee-------eeeccccCCc-------ccceec-------CCCceE----e
Confidence 9988 5568888 99998877663 4444787887 788886 656666 9
Q ss_pred eccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEc-CCCCEEEEEeCCCcEEEEecCCCCc--cccc------
Q 003871 409 CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS-HSGDFLVALTQTATHKLWKWQSNKQ--SLEE------ 479 (790)
Q Consensus 409 t~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~s-pdg~~l~s~~~dg~i~vw~~~~~~~--~~g~------ 479 (790)
|++.|+.+++|-.+.. .+..+.+.. ..||..+..++.|. .+|.++.+++.|++.+.+++..... .-|.
T Consensus 305 ta~~DnSlk~~vfD~~--dg~pR~LR~-R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~ 381 (910)
T KOG1539|consen 305 TAGADNSLKVWVFDSG--DGVPRLLRS-RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR 381 (910)
T ss_pred eccCCCceeEEEeeCC--CCcchheee-ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence 9999999999987632 122222222 25899999999998 7899999999999999888754333 0000
Q ss_pred ---c------cccc---------------------------ccccccCCCceeeeeccc----CCCCCCeEEEEec--Cc
Q 003871 480 ---E------NVNM---------------------------ESQLYQPSSKLVMTNDIA----ADPKDSISCFALR--GS 517 (790)
Q Consensus 480 ---~------~~~~---------------------------~~~i~~~~~~~~~~~~~~----~~~~~~V~~l~~s--~~ 517 (790)
. ...+ ....|+......=...+. ......+++++.+ |+
T Consensus 382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN 461 (910)
T KOG1539|consen 382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN 461 (910)
T ss_pred cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc
Confidence 0 0000 114565544332111111 1134678888888 99
Q ss_pred EEEEec-CCeEEEEECCCCcEEEEE---cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEE
Q 003871 518 HLFSAS-GGKISIFSLETFQTLATF---ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 592 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~~~~~~~~~---~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l 592 (790)
+.+.|. .|.|-+|++.+|-...+| ..|..+|+.++....+ .+++++.+|.+.+||..+...+..++. ...+.++
T Consensus 462 F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~i 540 (910)
T KOG1539|consen 462 FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGI 540 (910)
T ss_pred eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCccee
Confidence 999998 899999999999888888 4899999999998888 999999999999999998887777763 4568888
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCcee
Q 003871 593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT 671 (790)
Q Consensus 593 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~ 671 (790)
.++.....++.+.+|-.|+++|..+.+ .++ ...+|. +.|++++|||||++|++ +.|++|++||+.++.++
T Consensus 541 v~hr~s~l~a~~~ddf~I~vvD~~t~k-----vvR-~f~gh~---nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 541 VYHRVSDLLAIALDDFSIRVVDVVTRK-----VVR-EFWGHG---NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred eeeehhhhhhhhcCceeEEEEEchhhh-----hhH-Hhhccc---cceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 898888899999999999999999832 333 455777 79999999999999999 58999999999999999
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcC-CeEEEEECCC
Q 003871 672 SQLVPDKMDLPITYATYSCDGKCIYVSCKS-GHVKVFDTST 711 (790)
Q Consensus 672 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d-g~i~vwd~~~ 711 (790)
..+.. ..+++++.|||+|.+||+...| .-|++|.-.+
T Consensus 612 D~~~v---d~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 612 DGLLV---DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred eeEec---CCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 88854 7899999999999999999998 7799997543
No 83
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.1e-27 Score=250.98 Aligned_cols=240 Identities=14% Similarity=0.203 Sum_probs=200.0
Q ss_pred CCCCCeEEEEec--CcEEEEec-CCeEEEEECCC--------------------------------C-------------
Q 003871 504 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET--------------------------------F------------- 535 (790)
Q Consensus 504 ~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~--------------------------------~------------- 535 (790)
.|.+.|+++.|+ |+|||+|+ |+.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 699999999999 99999999 99999998754 0
Q ss_pred ---------------cEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeC-CCC
Q 003871 536 ---------------QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLN 599 (790)
Q Consensus 536 ---------------~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~ 599 (790)
++++.|.+|.+.|..+.|+.+++|++++.|.+|++|++...++++.|. |...|+|++|+| |.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence 012345689999999999998899999999999999999999999997 999999999999 889
Q ss_pred EEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCC
Q 003871 600 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK 678 (790)
Q Consensus 600 ~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~ 678 (790)
++++|+-|+.||||++...+... ...-+ .-|++++|.|||++.++| .+|.+++|+....+....+....
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~------W~Dl~----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVD------WNDLR----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred cEeecccccceEEeecCcCeeEe------ehhhh----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 99999999999999999844332 22323 489999999999999997 89999999998877766554322
Q ss_pred C------CCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEE
Q 003871 679 M------DLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 679 h------~~~v~~l~~s~dg-~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~ 751 (790)
| ...|+.+.|.|.. ..|++.+.|..|+|||.....++..|. |.++..- -+..+|+. ||++++++
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK-------G~~n~~S-Q~~Asfs~-Dgk~IVs~ 564 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK-------GFRNTSS-QISASFSS-DGKHIVSA 564 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc-------ccccCCc-ceeeeEcc-CCCEEEEe
Confidence 2 3379999999744 357777899999999999888888887 3322211 23788999 99999999
Q ss_pred eCCCcEEEEecC
Q 003871 752 LTNGRVHVIEPL 763 (790)
Q Consensus 752 s~Dg~i~iW~~~ 763 (790)
++|..|+||+..
T Consensus 565 seDs~VYiW~~~ 576 (712)
T KOG0283|consen 565 SEDSWVYIWKND 576 (712)
T ss_pred ecCceEEEEeCC
Confidence 999999999974
No 84
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.9e-25 Score=243.47 Aligned_cols=274 Identities=14% Similarity=0.132 Sum_probs=206.2
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeee-ecccCCCCCCeEEEEec---
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT-NDIAADPKDSISCFALR--- 515 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~V~~l~~s--- 515 (790)
|-..|.....++|+..+++++.+.....|+...+.. .++....|+... .....+|.+.|.+++|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~-----------v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d 87 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA-----------VLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD 87 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceE-----------EeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence 344566667788877788888888888887654322 112222232111 01123799999999998
Q ss_pred CcEEEEec-CCeEEEEECCCC-------cEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCC
Q 003871 516 GSHLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGH 585 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~-------~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h 585 (790)
+++|++|+ |++|++||+.++ ..+..+.+|...|.+++|+|++ .|++|+.|++|++||+.+++.+..+.+|
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 57899999 999999999765 3567788999999999999986 8999999999999999999999999999
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E----eCCcE
Q 003871 586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I----HEGQI 660 (790)
Q Consensus 586 ~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~----~dg~I 660 (790)
...|.+++|+|+|++|++++.|++|++||+++++. +..+ .+|.. ..+..+.|.+++..+++ | .|+.|
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl-~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSV-EAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEE-ecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 99999999999999999999999999999998653 2222 23431 23457789998877776 3 37899
Q ss_pred EEEECCCCc-eeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEE
Q 003871 661 DVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 738 (790)
Q Consensus 661 ~iwd~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 738 (790)
++||+++.. ++..... .+...+....|++++++|++|+ .|+.|++||+.++++...... .+..++. ++
T Consensus 240 klWDlr~~~~p~~~~~~-d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~-------~s~~~~~--g~ 309 (493)
T PTZ00421 240 MLWDTRKMASPYSTVDL-DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY-------SSVEPHK--GL 309 (493)
T ss_pred EEEeCCCCCCceeEecc-CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec-------cCCCCCc--ce
Confidence 999998754 3333322 2345566778999999999887 599999999999987766432 1233455 77
Q ss_pred EEec
Q 003871 739 AAHP 742 (790)
Q Consensus 739 ~~sp 742 (790)
+|.|
T Consensus 310 ~~~p 313 (493)
T PTZ00421 310 CMMP 313 (493)
T ss_pred Eecc
Confidence 7877
No 85
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.8e-25 Score=232.74 Aligned_cols=394 Identities=13% Similarity=0.117 Sum_probs=284.1
Q ss_pred ccccCccccchhh-hhhhhccCCCccccccccCCC------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCC
Q 003871 307 DKLKFPSMDKSRL-LSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (790)
Q Consensus 307 ~~i~iwd~~~~~~-~~~l~~h~~~v~v~~i~fspd------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~ 379 (790)
|.|.||++.++-. ...+.++.+.- +.+++|++. +.+|.|. -||+.+++++ ..+....+.|
T Consensus 47 g~IEiwN~~~~w~~~~vi~g~~drs-IE~L~W~e~~RLFS~g~sg~i~--EwDl~~lk~~--------~~~d~~gg~I-- 113 (691)
T KOG2048|consen 47 GNIEIWNLSNNWFLEPVIHGPEDRS-IESLAWAEGGRLFSSGLSGSIT--EWDLHTLKQK--------YNIDSNGGAI-- 113 (691)
T ss_pred CcEEEEccCCCceeeEEEecCCCCc-eeeEEEccCCeEEeecCCceEE--EEecccCcee--------EEecCCCcce--
Confidence 9999999987653 45566666543 449999977 8899999 9999999987 7777777777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCce-eeeeccCCCCCCceEEEEEcCCCCEEEE
Q 003871 380 GDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVA 458 (790)
Q Consensus 380 ~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~-~~~~l~~~~h~~~V~~l~~spdg~~l~s 458 (790)
|+++.+ |.+..+ +.|+.||.+..++.. ++.+ ....+. ..+++|.+++|+|++..+++
T Consensus 114 -----Wsiai~-------p~~~~l----~IgcddGvl~~~s~~----p~~I~~~r~l~--rq~sRvLslsw~~~~~~i~~ 171 (691)
T KOG2048|consen 114 -----WSIAIN-------PENTIL----AIGCDDGVLYDFSIG----PDKITYKRSLM--RQKSRVLSLSWNPTGTKIAG 171 (691)
T ss_pred -----eEEEeC-------CccceE----EeecCCceEEEEecC----CceEEEEeecc--cccceEEEEEecCCccEEEe
Confidence 999998 888888 999999977777765 3333 222222 24689999999999999999
Q ss_pred EeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEec-CCeEEEEECCCCc
Q 003871 459 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQ 536 (790)
Q Consensus 459 ~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~ 536 (790)
|+.||.|++||..++.. +. ..+.++.. ...+...-|+++.|- ...|++|. .|+|++||...+.
T Consensus 172 Gs~Dg~Iriwd~~~~~t------------~~-~~~~~~d~--l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQT------------LH-IITMQLDR--LSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred cccCceEEEEEcCCCce------------EE-Eeeecccc--cccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc
Confidence 99999999999987654 00 00000111 001233456777777 88999998 7999999999999
Q ss_pred EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce----EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q 003871 537 TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 611 (790)
Q Consensus 537 ~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~----~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~ 611 (790)
.+..+..|...|.+++..+++ .+++++.|+.|..|...+++. ......|...|.+++..++ .+++|+.|.++.
T Consensus 237 LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~ 314 (691)
T KOG2048|consen 237 LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLA 314 (691)
T ss_pred hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEE
Confidence 999999999999999999998 999999999999988776533 1223458888999998876 788888887776
Q ss_pred EEECCCCce----------------------------------------------eeceeeeeeccCCCCCCCCeEEEEE
Q 003871 612 VWDAVGWKK----------------------------------------------LCSKFLHSFQTGLVPETTIVNHIQF 645 (790)
Q Consensus 612 vwd~~~~~~----------------------------------------------~~~~~l~~~~~~~~~~~~~v~~i~~ 645 (790)
+-..+..+. ...+.++-...++ ..|.+.+.
T Consensus 315 i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~----~nIs~~ai 390 (691)
T KOG2048|consen 315 ICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEK----ENISCAAI 390 (691)
T ss_pred EccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCc----cceeeecc
Confidence 644332000 0000111011112 47889999
Q ss_pred eCCCCEEEEEeCCcEEEEECCC--------------------------------------------------Cceeeeec
Q 003871 646 HPDQIHLLSIHEGQIDVYEAPT--------------------------------------------------LNHTSQLV 675 (790)
Q Consensus 646 sp~~~~l~~~~dg~I~iwd~~~--------------------------------------------------~~~~~~~~ 675 (790)
||+|.+++.+.-...+||.+.- .+.+..+.
T Consensus 391 SPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~ 470 (691)
T KOG2048|consen 391 SPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQ 470 (691)
T ss_pred CCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccc
Confidence 9999999987644455554432 00000011
Q ss_pred CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCC
Q 003871 676 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 755 (790)
Q Consensus 676 ~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg 755 (790)
.......|..+..||+|+|+|+.+.+|.|.+|++++++........ . ..+++++|+|.+.+.|+.+..|+
T Consensus 471 ~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl--------n--~~vTa~~~~~~~~~~lvvats~n 540 (691)
T KOG2048|consen 471 SQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL--------N--IDVTAAAFSPFVRNRLVVATSNN 540 (691)
T ss_pred cccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc--------C--cceeeeeccccccCcEEEEecCC
Confidence 1112457899999999999999999999999999998755443211 2 33559999976788899999999
Q ss_pred cEEEEecCCCc
Q 003871 756 RVHVIEPLESE 766 (790)
Q Consensus 756 ~i~iW~~~~~~ 766 (790)
.+.-+|++..+
T Consensus 541 Qv~efdi~~~~ 551 (691)
T KOG2048|consen 541 QVFEFDIEARN 551 (691)
T ss_pred eEEEEecchhh
Confidence 99999995443
No 86
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.6e-27 Score=226.30 Aligned_cols=238 Identities=13% Similarity=0.195 Sum_probs=207.4
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--Cc
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 517 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~ 517 (790)
+.++|.|+.||.|...+++|+.||.|++|.+.++.+ +.+ +...|...|+|+.|+ +.
T Consensus 262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C--------------------lRr--FdrAHtkGvt~l~FSrD~S 319 (508)
T KOG0275|consen 262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC--------------------LRR--FDRAHTKGVTCLSFSRDNS 319 (508)
T ss_pred cccceEEEeecccHHHhhccCcCCcEEEEEEecchH--------------------HHH--hhhhhccCeeEEEEccCcc
Confidence 678999999999999999999999999999887655 222 223699999999999 88
Q ss_pred EEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcC--CCCCEEEEE
Q 003871 518 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLA 593 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~--h~~~v~~l~ 593 (790)
.+.+++ |.++++.-+.+|++++.+++|...|+...|.++| .+++++.||+|++|+..+++++.+++. ...+|+++.
T Consensus 320 qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~ 399 (508)
T KOG0275|consen 320 QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVI 399 (508)
T ss_pred hhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEE
Confidence 899999 9999999999999999999999999999999999 999999999999999999999988864 456788888
Q ss_pred EeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCcee
Q 003871 594 YSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT 671 (790)
Q Consensus 594 ~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~ 671 (790)
.-| +...+++|...++|.+.++.. ..++++..+.. ..+...+.+.+|.|.++.+ |.|+.++.|.+.+|+..
T Consensus 400 ~~PKnpeh~iVCNrsntv~imn~qG------QvVrsfsSGkR-EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 400 LLPKNPEHFIVCNRSNTVYIMNMQG------QVVRSFSSGKR-EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE 472 (508)
T ss_pred EcCCCCceEEEEcCCCeEEEEeccc------eEEeeeccCCc-cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee
Confidence 877 567899999999999999986 44554544433 1256677789999999998 79999999999999998
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 672 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 672 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
+++.. |...+..++-+|..+.+++-++||.+++|.
T Consensus 473 ~tl~V--hEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 473 RTLPV--HEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeeec--ccccccccccCcccchhhhhcccchhhhcC
Confidence 88865 688999999999999999999999999994
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=246.76 Aligned_cols=277 Identities=18% Similarity=0.201 Sum_probs=230.7
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--Cc
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 517 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~ 517 (790)
|...+.+..|. +.++++++.+++|++|+..++.. +.. ...+|.+.|.++++. +.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~---------------------i~~-~l~GH~g~V~~l~~~~~~~ 262 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL---------------------ILT-RLVGHFGGVWGLAFPSGGD 262 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE---------------------EEe-eccCCCCCceeEEEecCCC
Confidence 46678888888 45699999999999998765432 221 123899999999999 89
Q ss_pred EEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeC
Q 003871 518 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 596 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~sp 596 (790)
++++|+ |.++++||..+|++...+.+|...|.++...+. .+++|+.|.+|++|++.++..+..+.+|.++|+++..+
T Consensus 263 ~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~- 340 (537)
T KOG0274|consen 263 KLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF-LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD- 340 (537)
T ss_pred EEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc-eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence 999999 999999999999999999999999988876433 88889999999999999999999999999999999997
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCC-ceeeee
Q 003871 597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQL 674 (790)
Q Consensus 597 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~-~~~~~~ 674 (790)
+.++++|+.|++|++||+.++ ..+. ...+|. ..|.++.+.+. ..+++ +.|+.|++||+++. +++.++
T Consensus 341 -~~~lvsgs~d~~v~VW~~~~~-----~cl~-sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 341 -EPLLVSGSYDGTVKVWDPRTG-----KCLK-SLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred -CCEEEEEecCceEEEEEhhhc-----eeee-eecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence 779999999999999999984 4455 344577 79999988876 66777 48999999999999 898888
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC
Q 003871 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 754 (790)
Q Consensus 675 ~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D 754 (790)
.+ |..-+..+. ..+++|++++.|++|++||..+++.+..+. +++...|. ++++. ...+++++.|
T Consensus 410 ~~--h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~-------~~~~~~v~--~l~~~---~~~il~s~~~ 473 (537)
T KOG0274|consen 410 QG--HTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLE-------GRHVGGVS--ALALG---KEEILCSSDD 473 (537)
T ss_pred cC--Ccccccccc--cccceeEeccccccEEEeecccCceeeeec-------cCCcccEE--EeecC---cceEEEEecC
Confidence 64 566665554 457899999999999999999999999987 32233455 55543 3678889999
Q ss_pred CcEEEEecCCCcccc
Q 003871 755 GRVHVIEPLESEVEW 769 (790)
Q Consensus 755 g~i~iW~~~~~~~~w 769 (790)
|++++||+.+++..-
T Consensus 474 ~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 474 GSVKLWDLRSGTLIR 488 (537)
T ss_pred CeeEEEecccCchhh
Confidence 999999999987664
No 88
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.6e-26 Score=216.30 Aligned_cols=304 Identities=16% Similarity=0.159 Sum_probs=223.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCC-CCceeeeeccCCCCCCceEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINE-PSECRTLLLPDNSFGGRVVR 446 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~-~~~~~~~~l~~~~h~~~V~~ 446 (790)
.+|+||.+.| ++++|+ .||++| ||++.|++|++|++.+... ...+.+..++ -+..+.
T Consensus 80 ~~LKgH~~~v-------t~~~Fs-------SdGK~l----at~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~ 137 (420)
T KOG2096|consen 80 SVLKGHKKEV-------TDVAFS-------SDGKKL----ATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTR 137 (420)
T ss_pred hhhhccCCce-------eeeEEc-------CCCcee----EEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceE
Confidence 6789999999 999999 999999 9999999999999975211 0122222322 245678
Q ss_pred EEEcCCCCEEEE-EeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec
Q 003871 447 LIYSHSGDFLVA-LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 523 (790)
Q Consensus 447 l~~spdg~~l~s-~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s 523 (790)
+.|+||-+-++. +-...++++|.+..... |.....+. -|| ...+.+.|.-.|..+-.. +.+|++++
T Consensus 138 V~FapDc~s~vv~~~~g~~l~vyk~~K~~d--G~~~~~~v--~~D-------~~~f~~kh~v~~i~iGiA~~~k~imsas 206 (420)
T KOG2096|consen 138 VVFAPDCKSVVVSVKRGNKLCVYKLVKKTD--GSGSHHFV--HID-------NLEFERKHQVDIINIGIAGNAKYIMSAS 206 (420)
T ss_pred EEECCCcceEEEEEccCCEEEEEEeeeccc--CCCCcccc--ccc-------ccccchhcccceEEEeecCCceEEEEec
Confidence 899999876554 44467899998765332 22111110 111 001223466677776666 78899999
Q ss_pred -CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC---CC-----ceEEEEcCCCCCEEEEE
Q 003871 524 -GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---TK-----KTKAKLKGHQNRITCLA 593 (790)
Q Consensus 524 -dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~---~~-----~~~~~l~~h~~~v~~l~ 593 (790)
|..|.+|+++ |+.+..+......-+..+.||+| ++++++..-.|++|.+- .| ..+..++||...|..++
T Consensus 207 ~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~a 285 (420)
T KOG2096|consen 207 LDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAA 285 (420)
T ss_pred CCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeee
Confidence 8999999998 99999887766667788999999 99999999999999863 33 23456899999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCcee--eceeeeeecc-CCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCce
Q 003871 594 YSLSLNVLVSSGADAQLCVWDAVGWKKL--CSKFLHSFQT-GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH 670 (790)
Q Consensus 594 ~spdg~~l~s~s~dg~I~vwd~~~~~~~--~~~~l~~~~~-~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~ 670 (790)
|+|+.+.+++.|.||++++||.+-.-.. ..+.++..+. -|. ..+....++.+|.|..||.+....+++|..++|+.
T Consensus 286 Fsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~a-ag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~ 364 (420)
T KOG2096|consen 286 FSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHA-AGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKD 364 (420)
T ss_pred eCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhh-cCCCceEEEeCCCCcEEEeecCCceEEEEcccCcc
Confidence 9999999999999999999998641110 0111111100 011 01334489999999999999888999999999987
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 671 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 671 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
...+.. -|...|.+++|+++|+++++++ |..++++.
T Consensus 365 ~~~~e~-~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 365 YPELED-IHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred chhHHH-hhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 776653 4799999999999999999986 67777765
No 89
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.7e-26 Score=233.86 Aligned_cols=302 Identities=17% Similarity=0.160 Sum_probs=225.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
-.+++|+..| .++++. |.|..+ +|||.|.+|++||+.......+..+... ......|.++
T Consensus 161 i~l~hgtk~V-------sal~~D-------p~GaR~----~sGs~Dy~v~~wDf~gMdas~~~fr~l~--P~E~h~i~sl 220 (641)
T KOG0772|consen 161 IQLKHGTKIV-------SALAVD-------PSGARF----VSGSLDYTVKFWDFQGMDASMRSFRQLQ--PCETHQINSL 220 (641)
T ss_pred EeccCCceEE-------EEeeec-------CCCcee----eeccccceEEEEecccccccchhhhccC--ccccccccee
Confidence 3466777777 999997 889999 9999999999999975432222211111 2345679999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCce--eeeecccCCCCCCeEEEEec---CcEEEEe
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR---GSHLFSA 522 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~V~~l~~s---~~~l~s~ 522 (790)
.||+.|..|++.+.....+|+|-..... -....|. +.......+|...++|.+|+ .+.++++
T Consensus 221 ~ys~Tg~~iLvvsg~aqakl~DRdG~~~-------------~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~ 287 (641)
T KOG0772|consen 221 QYSVTGDQILVVSGSAQAKLLDRDGFEI-------------VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC 287 (641)
T ss_pred eecCCCCeEEEEecCcceeEEccCCcee-------------eeeeccchhhhhhhccCCceeeeeccccccCcccceEEe
Confidence 9999999999999999999999765332 0111111 11112234899999999999 5567777
Q ss_pred c-CCeEEEEECCCCcE-EEEEc-----CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc--e-EEEEcCCCC--CE
Q 003871 523 S-GGKISIFSLETFQT-LATFA-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK--T-KAKLKGHQN--RI 589 (790)
Q Consensus 523 s-dg~I~vwd~~~~~~-~~~~~-----~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~--~-~~~l~~h~~--~v 589 (790)
+ ||++++||+.+.+. ...+. +..-+++.++|+|+| .||+|..||.|.+|+..+.. + ...-..|.. .|
T Consensus 288 s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~I 367 (641)
T KOG0772|consen 288 SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDI 367 (641)
T ss_pred cCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCce
Confidence 7 99999999987543 22222 233467999999999 99999999999999975432 2 223345776 89
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-------eCCcEEE
Q 003871 590 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-------HEGQIDV 662 (790)
Q Consensus 590 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-------~dg~I~i 662 (790)
+++.||+||++|++-+.|+++++||++..+ +++.....-..+ .+-+.++|||+.+++++| ..|.+.+
T Consensus 368 tsi~FS~dg~~LlSRg~D~tLKvWDLrq~k----kpL~~~tgL~t~--~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f 441 (641)
T KOG0772|consen 368 TSISFSYDGNYLLSRGFDDTLKVWDLRQFK----KPLNVRTGLPTP--FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFF 441 (641)
T ss_pred eEEEeccccchhhhccCCCceeeeeccccc----cchhhhcCCCcc--CCCCccccCCCceEEEecccccCCCCCceEEE
Confidence 999999999999999999999999999843 333311111111 456789999999999985 2356999
Q ss_pred EECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 003871 663 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 663 wd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~ 710 (790)
||..+...+..+... ...|..+.|+|.-+.|.+|+.||+++||=-.
T Consensus 442 ~d~~t~d~v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 442 FDRMTLDTVYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred EeccceeeEEEecCC--CceEEEEeecchhhheeeecCCCceEEEECc
Confidence 999999888888653 7889999999999999999999999987433
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.6e-26 Score=217.29 Aligned_cols=309 Identities=15% Similarity=0.168 Sum_probs=237.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
+.+.||.+.| |.++-. .....+ .+++.|.+.+||.++ ++.|.... .||.+.|.++
T Consensus 142 re~~GHkDGi-------W~Vaa~-------~tqpi~----gtASADhTA~iWs~E----sg~CL~~Y---~GH~GSVNsi 196 (481)
T KOG0300|consen 142 RELEGHKDGI-------WHVAAD-------STQPIC----GTASADHTARIWSLE----SGACLATY---TGHTGSVNSI 196 (481)
T ss_pred hhhcccccce-------eeehhh-------cCCcce----eecccccceeEEeec----cccceeee---cccccceeeE
Confidence 8899999999 888874 333455 999999999999997 57776533 4899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecC------CCCcccccc---ccccc-cccccC-----CCcee--eeecccCCCCCCeE
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQ------SNKQSLEEE---NVNME-SQLYQP-----SSKLV--MTNDIAADPKDSIS 510 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~------~~~~~~g~~---~~~~~-~~i~~~-----~~~~~--~~~~~~~~~~~~V~ 510 (790)
+|++.+..+++++.|++..||... .+..+.++. ....+ -..-+. .++.. .......+|.+.|.
T Consensus 197 kfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~ 276 (481)
T KOG0300|consen 197 KFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVS 276 (481)
T ss_pred EeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceE
Confidence 999999999999999999999832 211111110 00000 000000 11111 11122337999999
Q ss_pred EEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEEEcCC
Q 003871 511 CFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGH 585 (790)
Q Consensus 511 ~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~-~~~~~l~~h 585 (790)
+..|- |+.+++++ |.+..+||+++|..+..+.+|....+.++-+|.. ++++.+.|.+.++||.+.. ..+..|.||
T Consensus 277 a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGH 356 (481)
T KOG0300|consen 277 ACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGH 356 (481)
T ss_pred ehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccc
Confidence 99998 88999999 9999999999999999999999999999999999 9999999999999999844 446789999
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEE
Q 003871 586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 664 (790)
Q Consensus 586 ~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd 664 (790)
+..|+++.|..|. .+++|++|.+|++||+++.+ .++.++... .+++.++.+..+..++.- .+..|++||
T Consensus 357 tdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMR----splATIRtd-----S~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 357 TDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMR----SPLATIRTD-----SPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred ccceeEEEEecCC-ceeecCCCceEEEeeecccc----CcceeeecC-----CccceeEeecCCceEEeccCCceEEEEe
Confidence 9999999999764 68999999999999999843 345544443 589999999988899986 556799999
Q ss_pred CCCCceeeeec---CCCCCCCeEEEEEecCC--CEEEEEEcCCeEEEEECCCC
Q 003871 665 APTLNHTSQLV---PDKMDLPITYATYSCDG--KCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 665 ~~~~~~~~~~~---~~~h~~~v~~l~~s~dg--~~l~sgs~dg~i~vwd~~~~ 712 (790)
+. |..+..+. ..+|...|+|++|..+- .-|++++.|..+.=|.+...
T Consensus 427 ln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 96 44433332 23478889999998543 45788899999999988754
No 91
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.2e-27 Score=227.17 Aligned_cols=289 Identities=15% Similarity=0.162 Sum_probs=228.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTS-LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVR 446 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg-~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~ 446 (790)
..|.||.+.| .|++=. |.. ..+ ++|+.||.|+|||+.. ..+.... ..|.+.|..
T Consensus 60 ~~L~gHrdGV-------~~lakh-------p~~ls~~----aSGs~DG~VkiWnlsq----R~~~~~f---~AH~G~V~G 114 (433)
T KOG0268|consen 60 GSLDGHRDGV-------SCLAKH-------PNKLSTV----ASGSCDGEVKIWNLSQ----RECIRTF---KAHEGLVRG 114 (433)
T ss_pred hhcccccccc-------chhhcC-------cchhhhh----hccccCceEEEEehhh----hhhhhee---ecccCceee
Confidence 5568999999 899987 655 556 9999999999999973 3443322 369999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEecCC
Q 003871 447 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGG 525 (790)
Q Consensus 447 l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~sdg 525 (790)
++++. ..++++|+|.+|+.|.+..... ... .....+..+.-+ ..-+++.++.
T Consensus 115 i~v~~--~~~~tvgdDKtvK~wk~~~~p~----------------------~ti---lg~s~~~gIdh~~~~~~FaTcGe 167 (433)
T KOG0268|consen 115 ICVTQ--TSFFTVGDDKTVKQWKIDGPPL----------------------HTI---LGKSVYLGIDHHRKNSVFATCGE 167 (433)
T ss_pred EEecc--cceEEecCCcceeeeeccCCcc----------------------eee---eccccccccccccccccccccCc
Confidence 99988 5689999999999998764211 100 133445555555 3333344456
Q ss_pred eEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEE
Q 003871 526 KISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 603 (790)
Q Consensus 526 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s 603 (790)
.|.|||.....++..+.-..+.|.++.|+|.. .|++|+.|+.|.+||++++.+++.+. -...-+.++|+|.+-.+++
T Consensus 168 ~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~ 246 (433)
T KOG0268|consen 168 QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVA 246 (433)
T ss_pred eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceee
Confidence 79999999889999998888889999999998 88899999999999999998887664 2345678999998888999
Q ss_pred EeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCC
Q 003871 604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLP 682 (790)
Q Consensus 604 ~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~ 682 (790)
|+.|..++.||++.- ..++. +..+|. +.|.++.|||.|+.+++| .|.+|+||..+.+.....+... .-..
T Consensus 247 a~ED~nlY~~DmR~l----~~p~~-v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~ 317 (433)
T KOG0268|consen 247 ANEDHNLYTYDMRNL----SRPLN-VHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQH 317 (433)
T ss_pred ccccccceehhhhhh----cccch-hhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhhe
Confidence 999999999999873 24555 555666 799999999999999995 8999999999887765555322 2567
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 003871 683 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 683 v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~ 718 (790)
|.++.||.|.+|+++||+|+.|++|.....+.+..+
T Consensus 318 V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 318 VFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred eeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 999999999999999999999999998765544443
No 92
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=4.1e-25 Score=206.16 Aligned_cols=274 Identities=15% Similarity=0.175 Sum_probs=222.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
+.+++|...+ .+++|. -||..+ ++|+.|+++++|+++. .. ........+|.+.|-.+
T Consensus 14 r~~~~~~~~v-------~Sv~wn-------~~g~~l----asgs~dktv~v~n~e~----~r-~~~~~~~~gh~~svdql 70 (313)
T KOG1407|consen 14 RELQGHVQKV-------HSVAWN-------CDGTKL----ASGSFDKTVSVWNLER----DR-FRKELVYRGHTDSVDQL 70 (313)
T ss_pred HHhhhhhhcc-------eEEEEc-------ccCcee----eecccCCceEEEEecc----hh-hhhhhcccCCCcchhhh
Confidence 5667888888 999998 899999 9999999999999974 22 22223346899999999
Q ss_pred EEcCC-CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-
Q 003871 448 IYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS- 523 (790)
Q Consensus 448 ~~spd-g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s- 523 (790)
+|+|. ...+++++.|.+|++||...++. ... . .....-.-+.|+ |+++++++
T Consensus 71 ~w~~~~~d~~atas~dk~ir~wd~r~~k~--------------------~~~-i---~~~~eni~i~wsp~g~~~~~~~k 126 (313)
T KOG1407|consen 71 CWDPKHPDLFATASGDKTIRIWDIRSGKC--------------------TAR-I---ETKGENINITWSPDGEYIAVGNK 126 (313)
T ss_pred eeCCCCCcceEEecCCceEEEEEeccCcE--------------------EEE-e---eccCcceEEEEcCCCCEEEEecC
Confidence 99984 46788999999999999886544 111 1 122233345666 99999999
Q ss_pred CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEE
Q 003871 524 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV 602 (790)
Q Consensus 524 dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~ 602 (790)
|..|...|.++.+.....+ ....+.-++|+.++ +++.....|.|.|.....-+++..++.|+....|+.|+|+|+++|
T Consensus 127 dD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA 205 (313)
T KOG1407|consen 127 DDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFA 205 (313)
T ss_pred cccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEe
Confidence 8999999999888776654 34456788888777 666666679999999998899999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCC
Q 003871 603 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDL 681 (790)
Q Consensus 603 s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~ 681 (790)
+|+.|..+.+||++. +++.+.+. .+. -+|..+.|+.||++||++ .|..|-|=++++|..+..+. +.+
T Consensus 206 ~GsADAlvSLWD~~E--LiC~R~is----Rld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~---~~~ 273 (313)
T KOG1407|consen 206 TGSADALVSLWDVDE--LICERCIS----RLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP---CEG 273 (313)
T ss_pred eccccceeeccChhH--hhhheeec----ccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEee---ccC
Confidence 999999999999987 43433333 222 589999999999999995 89999999999999998885 488
Q ss_pred CeEEEEEecCCCEEEEEEcC
Q 003871 682 PITYATYSCDGKCIYVSCKS 701 (790)
Q Consensus 682 ~v~~l~~s~dg~~l~sgs~d 701 (790)
+...++|+|...+||-++.|
T Consensus 274 ~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 274 PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred CceeEEecCCCceeeEEecC
Confidence 99999999999999977765
No 93
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.8e-25 Score=233.12 Aligned_cols=270 Identities=17% Similarity=0.232 Sum_probs=221.2
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec
Q 003871 446 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 523 (790)
Q Consensus 446 ~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s 523 (790)
-+.|+..+ +++.+....+.+|+..++.. ..... -+...|+++.|+ |.+|++|.
T Consensus 182 lldWss~n--~laValg~~vylW~~~s~~v---------------------~~l~~--~~~~~vtSv~ws~~G~~LavG~ 236 (484)
T KOG0305|consen 182 LLDWSSAN--VLAVALGQSVYLWSASSGSV---------------------TELCS--FGEELVTSVKWSPDGSHLAVGT 236 (484)
T ss_pred HhhcccCC--eEEEEecceEEEEecCCCce---------------------EEeEe--cCCCceEEEEECCCCCEEEEee
Confidence 35678443 34444456799888665432 22111 137899999999 99999999
Q ss_pred -CCeEEEEECCCCcEEEEEcC-CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEE-EcCCCCCEEEEEEeCCCC
Q 003871 524 -GGKISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLN 599 (790)
Q Consensus 524 -dg~I~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~-l~~h~~~v~~l~~spdg~ 599 (790)
+|.|.+||..+.+.+..+.+ |...|.+++|. + .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|++
T Consensus 237 ~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~ 314 (484)
T KOG0305|consen 237 SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN 314 (484)
T ss_pred cCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC
Confidence 99999999999999999988 99999999998 5 899999999999999998766544 888999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC-CCEEEEE---eCCcEEEEECCCCceeeeec
Q 003871 600 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSI---HEGQIDVYEAPTLNHTSQLV 675 (790)
Q Consensus 600 ~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~-~~~l~~~---~dg~I~iwd~~~~~~~~~~~ 675 (790)
++|+|+.|+.+.|||... ..++. ....|. +.|.+++|+|- ...||+| .|+.|++||..++..+..+.
T Consensus 315 ~lASGgnDN~~~Iwd~~~-----~~p~~-~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd 385 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLS-----PEPKF-TFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD 385 (484)
T ss_pred eeccCCCccceEeccCCC-----ccccE-EEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc
Confidence 999999999999999965 23344 333555 79999999995 4677773 79999999999999998875
Q ss_pred CCCCCCCeEEEEEecCCCEEEEE--EcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeC
Q 003871 676 PDKMDLPITYATYSCDGKCIYVS--CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 753 (790)
Q Consensus 676 ~~~h~~~v~~l~~s~dg~~l~sg--s~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~ 753 (790)
. ...|.++.|++..+-|+++ ..++.|.||+..+.+.+..+. ||.. . ++.++++| ||..+++|+.
T Consensus 386 t---gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~-------gH~~-R--Vl~la~SP-dg~~i~t~a~ 451 (484)
T KOG0305|consen 386 T---GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL-------GHTS-R--VLYLALSP-DGETIVTGAA 451 (484)
T ss_pred c---CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec-------CCcc-e--eEEEEECC-CCCEEEEecc
Confidence 4 7789999999998766654 346889999999988888776 6633 3 55999999 8999999999
Q ss_pred CCcEEEEecCCC
Q 003871 754 NGRVHVIEPLES 765 (790)
Q Consensus 754 Dg~i~iW~~~~~ 765 (790)
|.++++|++-..
T Consensus 452 DETlrfw~~f~~ 463 (484)
T KOG0305|consen 452 DETLRFWNLFDE 463 (484)
T ss_pred cCcEEeccccCC
Confidence 999999999765
No 94
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.1e-26 Score=223.87 Aligned_cols=281 Identities=11% Similarity=0.138 Sum_probs=220.8
Q ss_pred CCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-
Q 003871 438 NSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg-~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s- 515 (790)
.||.+.|.+++=+|.. ..+++|+.||.|++||+....+ .. ....|.+.|..+++.
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~---------------------~~--~f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC---------------------IR--TFKAHEGLVRGICVTQ 119 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhh---------------------hh--eeecccCceeeEEecc
Confidence 4899999999999987 6789999999999999886433 11 123699999999999
Q ss_pred CcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEE
Q 003871 516 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 594 (790)
Q Consensus 516 ~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~ 594 (790)
+..+-+|.|.+|+.|.++. .+.+++.+ ...+..+.-+..+ .+++++. .|.|||.....++..+.--...|.++.|
T Consensus 120 ~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEec
Confidence 6566566699999999874 56666654 3345666666566 8888875 5899999888889888877788999999
Q ss_pred eCC-CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCc-ee
Q 003871 595 SLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN-HT 671 (790)
Q Consensus 595 spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~-~~ 671 (790)
+|. ...|++|+.|+.|.+||++.+.......+. ..-+.|+|+|.+-.++++ .|..++.||++... ++
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~----------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQASPLKKVILT----------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred CCCcchheeeeccCCceEEEecccCCccceeeee----------ccccceecCccccceeeccccccceehhhhhhcccc
Confidence 994 567888889999999999996544322222 356789999976656665 89999999998654 34
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEE
Q 003871 672 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 672 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~ 751 (790)
.... +|...|.+++|||.|+-+++||.|.+|+||....+.-...+- ...--.+++|.|+- |.+++++|
T Consensus 266 ~v~~--dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh---------tkRMq~V~~Vk~S~-Dskyi~SG 333 (433)
T KOG0268|consen 266 NVHK--DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH---------TKRMQHVFCVKYSM-DSKYIISG 333 (433)
T ss_pred hhhc--ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh---------HhhhheeeEEEEec-cccEEEec
Confidence 4443 478999999999999999999999999999999876555432 12222256999999 89999999
Q ss_pred eCCCcEEEEecCCCcc
Q 003871 752 LTNGRVHVIEPLESEV 767 (790)
Q Consensus 752 s~Dg~i~iW~~~~~~~ 767 (790)
|+|+.|++|.....+.
T Consensus 334 Sdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 334 SDDGNVRLWKAKASEK 349 (433)
T ss_pred CCCcceeeeecchhhh
Confidence 9999999999876553
No 95
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=3.2e-24 Score=235.30 Aligned_cols=285 Identities=10% Similarity=0.026 Sum_probs=207.4
Q ss_pred CCCCCCcccceeccCCCceEeeeccccC------CCCceeeeeccCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEec
Q 003871 398 STSLPDADSAVCAKSLEKSVNLKLQLIN------EPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKW 470 (790)
Q Consensus 398 ~dg~~la~~~at~s~d~~i~iwd~~~~~------~~~~~~~~~l~~~~h~~~V~~l~~sp-dg~~l~s~~~dg~i~vw~~ 470 (790)
+|+..+ ++++.+.....|+..+.. +.+........-.+|.+.|.+++|+| ++++|++++.|++|++||+
T Consensus 30 ~d~~~~----~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi 105 (493)
T PTZ00421 30 WDCSNT----IACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGI 105 (493)
T ss_pred CCCCCc----EeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEec
Confidence 777777 788888888888764210 01111110000147999999999999 8899999999999999998
Q ss_pred CCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCcEEEEEcCCCC
Q 003871 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPP 546 (790)
Q Consensus 471 ~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~ 546 (790)
.++... ......+. ...+|...|.+++|+ +++|++++ |++|++||+.+++....+.+|..
T Consensus 106 ~~~~~~--------------~~~~~~l~--~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~ 169 (493)
T PTZ00421 106 PEEGLT--------------QNISDPIV--HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD 169 (493)
T ss_pred CCCccc--------------cccCcceE--EecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC
Confidence 764220 00001111 123799999999999 36899988 99999999999999999999999
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCC-EEEEEEeCCCCEEEEEe----CCCcEEEEECCCCce
Q 003871 547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVLVSSG----ADAQLCVWDAVGWKK 620 (790)
Q Consensus 547 ~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~-v~~l~~spdg~~l~s~s----~dg~I~vwd~~~~~~ 620 (790)
.|.+++|+|+| .|++|+.|++|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++..
T Consensus 170 ~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~- 248 (493)
T PTZ00421 170 QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA- 248 (493)
T ss_pred ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC-
Confidence 99999999999 9999999999999999999999899888765 45678999888877654 47899999998743
Q ss_pred eeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE
Q 003871 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698 (790)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 698 (790)
.++.....+.. ..+....|++++.++++ | .|+.|++||+.+++.+..... .+..++..++|.|.-..=+
T Consensus 249 ---~p~~~~~~d~~---~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~-~s~~~~~g~~~~pk~~~dv-- 319 (493)
T PTZ00421 249 ---SPYSTVDLDQS---SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY-SSVEPHKGLCMMPKWSLDT-- 319 (493)
T ss_pred ---CceeEeccCCC---CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec-cCCCCCcceEecccccccc--
Confidence 22321221222 35666789999999887 4 599999999999887766543 2356788899988532211
Q ss_pred EcCCeEEEEECCCC
Q 003871 699 CKSGHVKVFDTSTL 712 (790)
Q Consensus 699 s~dg~i~vwd~~~~ 712 (790)
..--..++|.+...
T Consensus 320 ~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 320 RKCEIARFYALTYH 333 (493)
T ss_pred cceeeeEEEEecCC
Confidence 11223356665443
No 96
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=6.6e-25 Score=218.24 Aligned_cols=268 Identities=13% Similarity=0.194 Sum_probs=220.7
Q ss_pred CCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccc
Q 003871 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 477 (790)
Q Consensus 398 ~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~ 477 (790)
|....+ .||+.|.++.++|.. .++...+. .||.-.|+.+.|+|+...+++++.|..|+||.......
T Consensus 229 ~s~~~i----lTGG~d~~av~~d~~----s~q~l~~~---~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-- 295 (506)
T KOG0289|consen 229 PSSSKI----LTGGEDKTAVLFDKP----SNQILATL---KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-- 295 (506)
T ss_pred CCCCcc----eecCCCCceEEEecc----hhhhhhhc---cCcceEEEEEEeccchhheeecCCcceEEeeccccccC--
Confidence 444566 999999999999996 45554432 48999999999999999999999999999998765322
Q ss_pred cccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCC--CCCeEEEE
Q 003871 478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP--PPIATYFI 552 (790)
Q Consensus 478 g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~--~~~v~~l~ 552 (790)
......|..+|+.+..+ |.|+++++ ||+..+.|+.++.++...... .-.+++.+
T Consensus 296 ---------------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 296 ---------------------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred ---------------------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 01122699999999999 99999999 899999999999988777542 34579999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeecc
Q 003871 553 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 631 (790)
Q Consensus 553 ~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~ 631 (790)
|+||| .+.+|+.||.|+|||+.++..+..|.+|+++|.+++|+.+|-+||++++|+.|++||++.-+ .++++..
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-----n~kt~~l 429 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-----NFKTIQL 429 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-----ccceeec
Confidence 99999 99999999999999999999999999999999999999999999999999999999999743 2332322
Q ss_pred CCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECC--CCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 632 GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP--TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 632 ~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~--~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
... ..+.++.|.+.|.+|+.+ .|=+|++++-. ..+++..+. .|.+..+.+.|..+.++++++|.|..++++.
T Consensus 430 ~~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~--~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 430 DEK---KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA--DHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ccc---ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh--hcccccceeeecccceEEeeccchhheEEee
Confidence 222 469999999999999985 66667777644 344555553 4677899999999999999999999988875
Q ss_pred C
Q 003871 709 T 709 (790)
Q Consensus 709 ~ 709 (790)
+
T Consensus 505 ~ 505 (506)
T KOG0289|consen 505 L 505 (506)
T ss_pred c
Confidence 4
No 97
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.6e-24 Score=194.44 Aligned_cols=286 Identities=14% Similarity=0.119 Sum_probs=223.2
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCC-------ceeeeeccC-CCCCCceEEEEEcCCCCEE
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS-------ECRTLLLPD-NSFGGRVVRLIYSHSGDFL 456 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~-------~~~~~~l~~-~~h~~~V~~l~~spdg~~l 456 (790)
.+++|. |.|... |.|+...+++|.......+.. +...+.+.. .-|.+.|.|.+|||+|..+
T Consensus 36 rav~fh-------p~g~ly----avgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geli 104 (350)
T KOG0641|consen 36 RAVAFH-------PAGGLY----AVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELI 104 (350)
T ss_pred eeEEec-------CCCceE----EeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeE
Confidence 899999 999999 999999999998654322111 110111111 2488999999999999999
Q ss_pred EEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec------CcEEEEec--CCeEE
Q 003871 457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKIS 528 (790)
Q Consensus 457 ~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s------~~~l~s~s--dg~I~ 528 (790)
++|+.|++|++..++.... -.+|.-+.+. -|.+.|..++|- +..|++++ |..|.
T Consensus 105 atgsndk~ik~l~fn~dt~---------------~~~g~dle~n---mhdgtirdl~fld~~~s~~~il~s~gagdc~iy 166 (350)
T KOG0641|consen 105 ATGSNDKTIKVLPFNADTC---------------NATGHDLEFN---MHDGTIRDLAFLDDPESGGAILASAGAGDCKIY 166 (350)
T ss_pred EecCCCceEEEEecccccc---------------cccCcceeee---ecCCceeeeEEecCCCcCceEEEecCCCcceEE
Confidence 9999999999987765433 0111112211 389999999997 56788887 67788
Q ss_pred EEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcC--C-----CCCEEEEEEeCCCCE
Q 003871 529 IFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--H-----QNRITCLAYSLSLNV 600 (790)
Q Consensus 529 vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~--h-----~~~v~~l~~spdg~~ 600 (790)
+-|..+|+....+.+|.+.|.++ ++-+| ++++|+.|.+|++||++-..++..+.. | +..|.+++..|.|++
T Consensus 167 ~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl 245 (350)
T KOG0641|consen 167 ITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL 245 (350)
T ss_pred EeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce
Confidence 88999999999999999999776 45567 999999999999999998888777632 2 357999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceee---eecC
Q 003871 601 LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS---QLVP 676 (790)
Q Consensus 601 l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~---~~~~ 676 (790)
|++|-.|....+||++.++ +++. ...|. ..|.++.|+|...+++++ .|..|++-|++ |...+ ....
T Consensus 246 l~sg~~dssc~lydirg~r-----~iq~-f~phs---adir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv 315 (350)
T KOG0641|consen 246 LASGHADSSCMLYDIRGGR-----MIQR-FHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVV 315 (350)
T ss_pred eeeccCCCceEEEEeeCCc-----eeee-eCCCc---cceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEEE
Confidence 9999999999999999854 4552 23444 799999999999999985 89999999996 33222 2222
Q ss_pred CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 003871 677 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 677 ~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~ 710 (790)
..|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 316 ~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 3578889999999998888999999999999764
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=234.20 Aligned_cols=326 Identities=17% Similarity=0.171 Sum_probs=245.4
Q ss_pred CCCCCCcccceeccCCCceEeeeccccCCC-CceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 003871 398 STSLPDADSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 476 (790)
Q Consensus 398 ~dg~~la~~~at~s~d~~i~iwd~~~~~~~-~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~ 476 (790)
|.+++| +|||+||.|++|++...... .......+ +.|.++|..++...+|+.|++++.|-+|++|+......
T Consensus 35 ~~~ryL----fTgGRDg~i~~W~~~~d~~~~s~~~~asm--e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~- 107 (735)
T KOG0308|consen 35 PNGRYL----FTGGRDGIIRLWSVTQDSNEPSTPYIASM--EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT- 107 (735)
T ss_pred CCCceE----EecCCCceEEEeccccccCCcccchhhhh--hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-
Confidence 678889 99999999999999743211 11111122 35999999999999999999999999999999875321
Q ss_pred ccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCC--cEEEEE--------c
Q 003871 477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF--QTLATF--------A 542 (790)
Q Consensus 477 ~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~--~~~~~~--------~ 542 (790)
.++.. ...|...|.|+++- ...+|+|+ |+.|.+||+.++ +.+.++ .
T Consensus 108 ------------------~c~st--ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~ 167 (735)
T KOG0308|consen 108 ------------------FCMST--IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG 167 (735)
T ss_pred ------------------hhHhh--hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCC
Confidence 12221 22699999999994 77888899 999999999977 233322 2
Q ss_pred -CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q 003871 543 -NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 620 (790)
Q Consensus 543 -~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 620 (790)
++..+|.+++.++.| .+++|+..+.+++||.++++.+..++||+..|.++..++||+.++++|.||+|++||+...
T Consensus 168 sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-- 245 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ-- 245 (735)
T ss_pred CCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc--
Confidence 677889999999999 9999999999999999999999999999999999999999999999999999999999873
Q ss_pred eeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCC-ceeeeecCCCCCCCeEEEEEecCCCEEEEE
Q 003871 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVS 698 (790)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 698 (790)
+.+.+ ...|. ..|+++..+|+=..+++| .||.|+.=|+++. +....+. ...+|..+..+.+.+-+-++
T Consensus 246 ---rCl~T-~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick---~daPv~~l~~~~~~~~~Wvt 315 (735)
T KOG0308|consen 246 ---RCLAT-YIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK---EDAPVLKLHLHEHDNSVWVT 315 (735)
T ss_pred ---ceeee-EEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec---CCCchhhhhhccccCCceee
Confidence 44443 23444 579999999998899985 8999999999884 3333343 26678888777555555777
Q ss_pred EcCCeEEEEECCCCe-------EEEEec-----------cccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEE
Q 003871 699 CKSGHVKVFDTSTLE-------LRCQIN-----------LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 760 (790)
Q Consensus 699 s~dg~i~vwd~~~~~-------~~~~~~-----------~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW 760 (790)
+.|+.|+-|...-.. +..... .+.+..+| +..+. ..+.-. |.+++.|=...|.+.+|
T Consensus 316 Ttds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~G--g~ai~--k~~mL~-dkRhVlTkDa~gnv~lw 390 (735)
T KOG0308|consen 316 TTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPG--GAAIK--KHAMLN-DKRHVLTKDAKGNVALW 390 (735)
T ss_pred eccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccC--chhhh--hhhhhc-CcceEeeecCCCCEEEE
Confidence 889999999765321 111000 01111222 11222 333334 67899999999999999
Q ss_pred ecCCCcc
Q 003871 761 EPLESEV 767 (790)
Q Consensus 761 ~~~~~~~ 767 (790)
|+..++.
T Consensus 391 DIl~~~~ 397 (735)
T KOG0308|consen 391 DILACVK 397 (735)
T ss_pred Eeeeeee
Confidence 9987653
No 99
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.6e-25 Score=206.66 Aligned_cols=261 Identities=15% Similarity=0.213 Sum_probs=208.0
Q ss_pred CCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEecCCCCcccccccccccccccc
Q 003871 412 SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQ 490 (790)
Q Consensus 412 ~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg-~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~ 490 (790)
..|.+.|-++.+.+.-..+..+. -.+.+..++|+++. +.+++++.||++++||......
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d-----~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~--------------- 95 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYD-----TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK--------------- 95 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeee-----cccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---------------
Confidence 35888888886422223344433 47889999999864 5688888899999999543211
Q ss_pred CCCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeC
Q 003871 491 PSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFD 564 (790)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~ 564 (790)
.+. ....|...|.++.|+ +..+++++ |++|++|+...++.+.++.+|...|...+|+|.. .++++|.
T Consensus 96 -----Pi~--~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 96 -----PIH--KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred -----chh--HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccC
Confidence 111 112699999999999 66677778 9999999999999999999999999999999987 9999999
Q ss_pred CCcEEEEeCCCCceEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEE
Q 003871 565 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 643 (790)
Q Consensus 565 dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i 643 (790)
|+++++||++..-....+..|...|.++.|+. +.+.+++|+.|+.|+.||++.-+ .++..+ .+|. -.|..+
T Consensus 169 d~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL-~gh~---~AVRkv 240 (311)
T KOG0277|consen 169 DGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFEL-NGHG---LAVRKV 240 (311)
T ss_pred CceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceee-cCCc---eEEEEE
Confidence 99999999986544444888999999999998 77889999999999999999843 345533 5676 699999
Q ss_pred EEeCCCC-EEEE-EeCCcEEEEECCCCce-eeeecCCCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEEC
Q 003871 644 QFHPDQI-HLLS-IHEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 644 ~~sp~~~-~l~~-~~dg~I~iwd~~~~~~-~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~dg~i~vwd~ 709 (790)
+|||... .||+ +.|-+++|||...+.. +.+. ..|+..+..+.||+ ++.++|+.+.|+.++||+.
T Consensus 241 k~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~--~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 241 KFSPHHASLLASASYDMTVRIWDPERQDSAIETV--DHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ecCcchhhHhhhccccceEEecccccchhhhhhh--hccceEEeccccccccCceeeecccccceeeecc
Confidence 9999765 4555 4899999999985543 3333 35789999999997 6789999999999999984
No 100
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=3.7e-24 Score=216.47 Aligned_cols=398 Identities=12% Similarity=0.072 Sum_probs=281.3
Q ss_pred ccccCccccchhhhhhhhccCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCC-CCCC
Q 003871 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRP-LDAS 378 (790)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~-~~v~ 378 (790)
.-+.+||...+......+.....+. ...|.|. ...+.+. .|+.+.|... +....++++. .-|
T Consensus 180 h~lSVWdWqk~~~~~~vk~sne~v~--~a~FHPtd~nliit~Gk~H~~--Fw~~~~~~l~-----k~~~~fek~ekk~V- 249 (626)
T KOG2106|consen 180 HMLSVWDWQKKAKLGPVKTSNEVVF--LATFHPTDPNLIITCGKGHLY--FWTLRGGSLV-----KRQGIFEKREKKFV- 249 (626)
T ss_pred cccchhhchhhhccCcceeccceEE--EEEeccCCCcEEEEeCCceEE--EEEccCCceE-----EEeeccccccceEE-
Confidence 6788999988887776666666655 8999996 5567777 9998887643 1113455543 334
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEE
Q 003871 379 SGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA 458 (790)
Q Consensus 379 ~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s 458 (790)
.|++|. ++|.. +||.++|.|.||+... ....+.. +.|.+.|.+++.-.+|. |++
T Consensus 250 ------l~v~F~-------engdv-----iTgDS~G~i~Iw~~~~----~~~~k~~---~aH~ggv~~L~~lr~Gt-llS 303 (626)
T KOG2106|consen 250 ------LCVTFL-------ENGDV-----ITGDSGGNILIWSKGT----NRISKQV---HAHDGGVFSLCMLRDGT-LLS 303 (626)
T ss_pred ------EEEEEc-------CCCCE-----EeecCCceEEEEeCCC----ceEEeEe---eecCCceEEEEEecCcc-Eee
Confidence 899998 77876 5999999999999963 3332222 26999999999999998 667
Q ss_pred EeCCCcEEEEecCCCCc-----cc--ccc--ccccccccc-----------cCCCceeeeecccCCCCCCeEEEEec--C
Q 003871 459 LTQTATHKLWKWQSNKQ-----SL--EEE--NVNMESQLY-----------QPSSKLVMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 459 ~~~dg~i~vw~~~~~~~-----~~--g~~--~~~~~~~i~-----------~~~~~~~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
|+.|..|..||-.-... |. |.. .....+.++ ..++++-+. ..+|......++.. .
T Consensus 304 GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~---v~gh~delwgla~hps~ 380 (626)
T KOG2106|consen 304 GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT---VQGHGDELWGLATHPSK 380 (626)
T ss_pred cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE---EEecccceeeEEcCCCh
Confidence 99999999999221111 10 100 000000011 111222111 12688888888888 6
Q ss_pred cEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEe
Q 003871 517 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 595 (790)
Q Consensus 517 ~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~s 595 (790)
+.+++++ |+.+++|+ ..+...+.. ...++.|+.|+|.|.+|.|+..|...+.|.++...+..-.. ..++++++|+
T Consensus 381 ~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ys 456 (626)
T KOG2106|consen 381 NQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYS 456 (626)
T ss_pred hheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-CCceEEEEEc
Confidence 7788887 99999999 455555443 45678899999999999999999999999998665544443 7899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeee-
Q 003871 596 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ- 673 (790)
Q Consensus 596 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~- 673 (790)
|+|.+||.|+.|+.|++|-+..+.. ........+. .+|+.+.||+|++++.+ +.|-.|..|.....+.+..
T Consensus 457 p~G~~lAvgs~d~~iyiy~Vs~~g~----~y~r~~k~~g---s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~ 529 (626)
T KOG2106|consen 457 PDGAFLAVGSHDNHIYIYRVSANGR----KYSRVGKCSG---SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSV 529 (626)
T ss_pred CCCCEEEEecCCCeEEEEEECCCCc----EEEEeeeecC---ceeEEeeecCCCceEEeccCceEEEEEccccCccccee
Confidence 9999999999999999999876432 1221222232 58999999999999999 6888899995433222111
Q ss_pred ---------------ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEE
Q 003871 674 ---------------LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 738 (790)
Q Consensus 674 ---------------~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 738 (790)
..+..+...+..++-+.+.+.+++|.+.|+|++|...-.+....+ |.| .|| +..|. +|
T Consensus 530 kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~--he~--~gh-s~~vt--~V 602 (626)
T KOG2106|consen 530 KDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS--HEY--GGH-SSHVT--NV 602 (626)
T ss_pred cceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc--eee--ccc-cceeE--EE
Confidence 111234566777777888899999999999999987755544332 111 255 44566 99
Q ss_pred EEecCCCCEEEEEeCCCcEEEEec
Q 003871 739 AAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 739 ~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
+|.- +..+|.+.+.|..|..|++
T Consensus 603 ~Fl~-~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 603 AFLC-KDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EEee-CCceEEecCCCceEEEEEe
Confidence 9998 5677777779999999986
No 101
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.6e-23 Score=230.56 Aligned_cols=222 Identities=14% Similarity=0.146 Sum_probs=176.0
Q ss_pred CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCc--------eEEEEcCCCCCEEEEE
Q 003871 524 GGKISIFSLETFQTLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKK--------TKAKLKGHQNRITCLA 593 (790)
Q Consensus 524 dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~-g-~l~sgs~dg~I~iwd~~~~~--------~~~~l~~h~~~v~~l~ 593 (790)
++.|++|+..+...+..+.+|...|.+++|+|+ + +|++|+.||+|++||+.++. ++..+.+|...|.+++
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 688999999888888899999999999999997 5 99999999999999997642 3446788999999999
Q ss_pred EeCCCCE-EEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCcee
Q 003871 594 YSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT 671 (790)
Q Consensus 594 ~spdg~~-l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~ 671 (790)
|+|++.. +++++.|++|++||+++++.. ..+. +. ..|.+++|+|+|.+|+++ .|+.|+|||+++++.+
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~-----~~i~--~~---~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIENEKRA-----FQIN--MP---KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCcEE-----EEEe--cC---CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 9998875 578999999999999986532 2122 22 479999999999999985 7999999999999998
Q ss_pred eeecCCCCCCCeE-----EEEEecCCCEEEEEEcCC----eEEEEECCC-CeEEEEeccccccCCCCcccccceEEEEEe
Q 003871 672 SQLVPDKMDLPIT-----YATYSCDGKCIYVSCKSG----HVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAH 741 (790)
Q Consensus 672 ~~~~~~~h~~~v~-----~l~~s~dg~~l~sgs~dg----~i~vwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~s 741 (790)
.++.+ |.+.+. ...|++++.+|++++.|+ .|+|||+++ ++.+..+... ....++...|.
T Consensus 203 ~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld---------~~~~~L~p~~D 271 (568)
T PTZ00420 203 SSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID---------NASAPLIPHYD 271 (568)
T ss_pred EEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec---------CCccceEEeee
Confidence 88865 444432 334568999999988774 799999995 5555554321 11223334555
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 742 PLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 742 p~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
+++|.++++|+.|++|++|++..+.
T Consensus 272 ~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 272 ESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCCCCEEEEEECCCeEEEEEccCCc
Confidence 6478999999999999999997764
No 102
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2e-24 Score=218.58 Aligned_cols=274 Identities=15% Similarity=0.185 Sum_probs=218.3
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
.+++|+ |...+= +|++++ -.+.||+... ....+.. ......|.++.|-.||+.+++|...|.
T Consensus 30 ssl~fs-------p~~P~d---~aVt~S-~rvqly~~~~----~~~~k~~---srFk~~v~s~~fR~DG~LlaaGD~sG~ 91 (487)
T KOG0310|consen 30 SSLCFS-------PKHPYD---FAVTSS-VRVQLYSSVT----RSVRKTF---SRFKDVVYSVDFRSDGRLLAAGDESGH 91 (487)
T ss_pred eeEecC-------CCCCCc---eEEecc-cEEEEEecch----hhhhhhH---HhhccceeEEEeecCCeEEEccCCcCc
Confidence 899998 543332 133333 6788888863 2222211 124688999999999999999999999
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCcEEEE
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLAT 540 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~ 540 (790)
|+|+|+.+.. .+. ...+|+.+|..+.|+ +..+++|+ |+.+++||+.+......
T Consensus 92 V~vfD~k~r~---------------------iLR--~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~ 148 (487)
T KOG0310|consen 92 VKVFDMKSRV---------------------ILR--QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE 148 (487)
T ss_pred EEEeccccHH---------------------HHH--HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE
Confidence 9999955411 111 122799999999999 66788888 68999999999887668
Q ss_pred EcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 003871 541 FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (790)
Q Consensus 541 ~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~ 617 (790)
+.+|++.|.|.+|+|.. .+++|+.||.|++||+++. ..+..+. |..+|..+.+-|.|..+|+++. ..|+|||+-+
T Consensus 149 l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~ 226 (487)
T KOG0310|consen 149 LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTT 226 (487)
T ss_pred ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecC
Confidence 89999999999999987 8999999999999999876 5555665 8999999999999999999884 5899999997
Q ss_pred CceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEE
Q 003871 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 696 (790)
Q Consensus 618 ~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 696 (790)
|.. .+. ....|. ..|+|+++..++..|++ |-|+.|++||+.+.+.+..+.. .++|.+++.+|+++.++
T Consensus 227 G~q----ll~-~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~v 295 (487)
T KOG0310|consen 227 GGQ----LLT-SMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVV 295 (487)
T ss_pred Cce----ehh-hhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEE
Confidence 542 233 222244 59999999999999988 5899999999988898888854 78999999999999999
Q ss_pred EEEcCCeEEEEECCCC
Q 003871 697 VSCKSGHVKVFDTSTL 712 (790)
Q Consensus 697 sgs~dg~i~vwd~~~~ 712 (790)
.|..||.+.+=+...+
T Consensus 296 iGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 296 IGMSNGLVSIRRREVK 311 (487)
T ss_pred Eecccceeeeehhhcc
Confidence 9999999887755443
No 103
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.4e-24 Score=217.90 Aligned_cols=280 Identities=15% Similarity=0.189 Sum_probs=220.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCce---------e--eeecc
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC---------R--TLLLP 436 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~---------~--~~~l~ 436 (790)
..+..|.-++ .+++++ ||+++. ++++.|++|.=|++...+..... + .+..+
T Consensus 136 ~~~~~H~~s~-------~~vals-------~d~~~~----fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~ 197 (479)
T KOG0299|consen 136 RVIGKHQLSV-------TSVALS-------PDDKRV----FSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKES 197 (479)
T ss_pred eeeccccCcc-------eEEEee-------ccccce----eecCCCcceeeeehhcCcccccccccchhhhhccCCCCcc
Confidence 4455788888 899999 999999 99999999999998754322111 0 11111
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-
Q 003871 437 DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 515 (790)
Q Consensus 437 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s- 515 (790)
..+|...|.+++.|+||+||++|+.|..|.||+.++... ++ ...+|.+.|.+++|-
T Consensus 198 r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~eh---------------------v~--~~~ghr~~V~~L~fr~ 254 (479)
T KOG0299|consen 198 RKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEH---------------------VK--VFKGHRGAVSSLAFRK 254 (479)
T ss_pred cccccceeEEEEEcCCCcEEEecCCCceEEEecCcccch---------------------hh--cccccccceeeeeeec
Confidence 127899999999999999999999999999999887544 11 123799999999999
Q ss_pred -CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEE
Q 003871 516 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 592 (790)
Q Consensus 516 -~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l 592 (790)
.+.+++++ |..|++|+++....+.++-+|...|..+....-+ .+-+|+.|+++++|++.. +....+.+|.+.+-|+
T Consensus 255 gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv 333 (479)
T KOG0299|consen 255 GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCV 333 (479)
T ss_pred CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeE
Confidence 55677777 9999999999988889999999999999888777 777788999999999953 4445678899999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCC--------CCCCeEEEEEeCCCCEEEEE-eCCcEEEE
Q 003871 593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP--------ETTIVNHIQFHPDQIHLLSI-HEGQIDVY 663 (790)
Q Consensus 593 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~--------~~~~v~~i~~sp~~~~l~~~-~dg~I~iw 663 (790)
+|-.+ ..+++|++||.|.+|++...+. +.+....|.- ...+|++++..|...++++| .+|.|++|
T Consensus 334 ~~In~-~HfvsGSdnG~IaLWs~~KKkp-----lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW 407 (479)
T KOG0299|consen 334 AFIND-EHFVSGSDNGSIALWSLLKKKP-----LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLW 407 (479)
T ss_pred EEecc-cceeeccCCceEEEeeecccCc-----eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEE
Confidence 99754 5899999999999999987443 3322222221 11389999999999999996 89999999
Q ss_pred ECCCC----ceeeeecCCCCCCCeEEEEEecCCCEEEEE
Q 003871 664 EAPTL----NHTSQLVPDKMDLPITYATYSCDGKCIYVS 698 (790)
Q Consensus 664 d~~~~----~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 698 (790)
-+..+ +++..+. -.+.|++++|+++|+++++|
T Consensus 408 ~i~~g~r~i~~l~~ls---~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 408 KIEDGLRAINLLYSLS---LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred EecCCccccceeeecc---cccEEEEEEEccCCCEEEEe
Confidence 99877 3344443 37889999999999977665
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=6e-24 Score=211.47 Aligned_cols=278 Identities=12% Similarity=0.108 Sum_probs=228.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcE
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 518 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~ 518 (790)
...+.++...|....+++|+.|..+.++|.+.++. +. ...||...|+.+.++ ...
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~---------------------l~--~~~Gh~kki~~v~~~~~~~~ 275 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI---------------------LA--TLKGHTKKITSVKFHKDLDT 275 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhh---------------------hh--hccCcceEEEEEEeccchhh
Confidence 34688888888877899999999999998776443 22 224899999999999 667
Q ss_pred EEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcC--CCCCEEEEEE
Q 003871 519 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAY 594 (790)
Q Consensus 519 l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~--h~~~v~~l~~ 594 (790)
+++++ |..|++|.............|..+|+.+..+|.| +++++++||+..+.|+++|..+..... ..-.+++.+|
T Consensus 276 v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~f 355 (506)
T KOG0289|consen 276 VITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAF 355 (506)
T ss_pred eeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeE
Confidence 78888 9999999998888888888999999999999999 999999999999999999988766543 2245899999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeee
Q 003871 595 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ 673 (790)
Q Consensus 595 spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~ 673 (790)
+|||..+.+|..|+.|++||+.++. .+..++ +|. ++|..++|+.+|-+|+++ .|+.|++||++..+..++
T Consensus 356 HpDgLifgtgt~d~~vkiwdlks~~-----~~a~Fp-ght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 356 HPDGLIFGTGTPDGVVKIWDLKSQT-----NVAKFP-GHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred cCCceEEeccCCCceEEEEEcCCcc-----ccccCC-CCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccce
Confidence 9999999999999999999999843 333233 476 899999999999999995 788899999999888888
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEE
Q 003871 674 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 674 ~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~--~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~ 751 (790)
+.... ...+.++.|.+.|.+|+.++.|=+|++++-.+. ..+..+. .| .+..+ ++.|.. ...+++++
T Consensus 427 ~~l~~-~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~-------~~-sg~st--~v~Fg~-~aq~l~s~ 494 (506)
T KOG0289|consen 427 IQLDE-KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA-------DH-SGLST--GVRFGE-HAQYLAST 494 (506)
T ss_pred eeccc-cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh-------hc-ccccc--eeeecc-cceEEeec
Confidence 87643 558999999999999999988888888875554 3344433 22 33444 888988 78999999
Q ss_pred eCCCcEEEEec
Q 003871 752 LTNGRVHVIEP 762 (790)
Q Consensus 752 s~Dg~i~iW~~ 762 (790)
|.|..++++.+
T Consensus 495 smd~~l~~~a~ 505 (506)
T KOG0289|consen 495 SMDAILRLYAL 505 (506)
T ss_pred cchhheEEeec
Confidence 99999988764
No 105
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6e-24 Score=203.38 Aligned_cols=292 Identities=14% Similarity=0.117 Sum_probs=211.5
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.+|...|++++|+.||++|++++.|++|++|++.+-.. ...++++... .-+..+.+.|.
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----------------~eHr~~R~nv---e~dhpT~V~FapD 143 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----------------KEHRCIRQNV---EYDHPTRVVFAPD 143 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----------------hhhhHhhccc---cCCCceEEEECCC
Confidence 47999999999999999999999999999999876322 1112222222 12355678888
Q ss_pred -CcEEEEec-CCeEEEEECCC---CcEEEE--------E-cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE
Q 003871 516 -GSHLFSAS-GGKISIFSLET---FQTLAT--------F-ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA 580 (790)
Q Consensus 516 -~~~l~s~s-dg~I~vwd~~~---~~~~~~--------~-~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~ 580 (790)
...++++- ..++++|.+.. |..... | +.|...+..+-...++ +|++++.|..|.+|+++ |+.+.
T Consensus 144 c~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~ 222 (420)
T KOG2096|consen 144 CKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQ 222 (420)
T ss_pred cceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceee
Confidence 44455554 67899997643 221111 1 2345566667666667 99999999999999998 88888
Q ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC---CCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-Ee
Q 003871 581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV---GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH 656 (790)
Q Consensus 581 ~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~---~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~ 656 (790)
.+......-+..+.||+|+++++++.---|++|.+- .|.......+. -..||. ..|..++|+|+++.+++ +.
T Consensus 223 ~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf-~LkGH~---saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 223 SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF-SLKGHQ---SAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred eeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh-eeccch---hheeeeeeCCCcceeEEEec
Confidence 887776777788999999999999999999999864 23222112222 234666 79999999999999998 79
Q ss_pred CCcEEEEECCC-------CceeeeecCC--CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCC
Q 003871 657 EGQIDVYEAPT-------LNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG 727 (790)
Q Consensus 657 dg~I~iwd~~~-------~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~g 727 (790)
||+++|||..- .+.+++.... .......+++.+|.|+.|+.+. ...+++|..++|+....+.-
T Consensus 299 DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~------- 370 (420)
T KOG2096|consen 299 DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELED------- 370 (420)
T ss_pred CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHH-------
Confidence 99999999752 1222222111 1134455999999999887654 57899999999987766652
Q ss_pred CcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 728 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 728 h~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
.|+..|. +++|+| +|++++|+| |..+++..-..|
T Consensus 371 ~h~~~Is--~is~~~-~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 371 IHSTTIS--SISYSS-DGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred hhcCcee--eEEecC-CCcEEeeec-ceeeeeecCCCc
Confidence 2355666 999999 899999997 678998874443
No 106
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.8e-24 Score=229.05 Aligned_cols=283 Identities=18% Similarity=0.228 Sum_probs=225.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcE
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH 518 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~ 518 (790)
+|...-+.++|.|+|.+|++++.||.|++|+..+... ....+ ..+...|.+++..+.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-----------------~P~ti-----~~~g~~v~~ia~~s~~ 68 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-----------------EPETI-----DISGELVSSIACYSNH 68 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-----------------CCchh-----hccCceeEEEeecccc
Confidence 6899999999999999999999999999998765311 01111 1267788888888668
Q ss_pred EEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeC
Q 003871 519 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 596 (790)
Q Consensus 519 l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~sp 596 (790)
+++|+ +++|.+|.+..++.-..+....-++++++++.+| ++|.||.|-.|++.++.+......+++|.++|.++.|+|
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred eEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC
Confidence 88888 8999999999887665666667789999999999 999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCC-CCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeee
Q 003871 597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE-TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 674 (790)
Q Consensus 597 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~-~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~ 674 (790)
.+++||+.+-||.|++||+.++.... .+..+....... ...+..++|+|+|..+++ +.|+.|++|+..++.....+
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~--tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L 226 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSK--TLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL 226 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhh--hcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee
Confidence 99999999999999999999865432 222122111110 146778999999766666 79999999999999988888
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC
Q 003871 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 754 (790)
Q Consensus 675 ~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D 754 (790)
....+...+..++|+|+|+|||+++.||.|.|||.++-+. +.+ ...|. +.+|.| +.+-+-.-...
T Consensus 227 r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~-----------~~~Vc--~~aw~p-~~n~it~~~~~ 291 (933)
T KOG1274|consen 227 RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEF-----------KRAVC--CEAWKP-NANAITLITAL 291 (933)
T ss_pred cccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccc-----------cceeE--EEecCC-CCCeeEEEeec
Confidence 7766666699999999999999999999999999998332 111 22444 999999 67766555555
Q ss_pred CcEEEE
Q 003871 755 GRVHVI 760 (790)
Q Consensus 755 g~i~iW 760 (790)
|...+|
T Consensus 292 g~~~~~ 297 (933)
T KOG1274|consen 292 GTLGVS 297 (933)
T ss_pred cccccC
Confidence 555555
No 107
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=3.4e-24 Score=224.98 Aligned_cols=273 Identities=15% Similarity=0.183 Sum_probs=224.7
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEE-EEec-
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALR- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~-l~~s- 515 (790)
+||...|..+++.++. .++++|.||++++|+-....+ .......+|.+-|.+ +++.
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~---------------------l~~~~~~~~~g~i~~~i~y~e 68 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY---------------------LETHAFEGPKGFIANSICYAE 68 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc---------------------ccceecccCcceeeccceecc
Confidence 5899999999987765 699999999999998654333 111111245555555 6666
Q ss_pred --CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEE
Q 003871 516 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 592 (790)
Q Consensus 516 --~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l 592 (790)
+..+++|+ |+.|.+|...+..++.++.+|...|+++....++.+++||.|.++++|-. +++...+.+|+..|+++
T Consensus 69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAV 146 (745)
T ss_pred ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeee
Confidence 55688888 99999999999999999999999999998777768899999999999975 56777799999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceee
Q 003871 593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS 672 (790)
Q Consensus 593 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~ 672 (790)
+.-|++ .+++||.|.+|++|.-.+ .++ ...+|. +.|+.+++-|++.++-++.||.|++|++ +|.++.
T Consensus 147 ~~l~e~-~~vTgsaDKtIklWk~~~-------~l~-tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~ 213 (745)
T KOG0301|consen 147 ASLPEN-TYVTGSADKTIKLWKGGT-------LLK-TFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLL 213 (745)
T ss_pred eecCCC-cEEeccCcceeeeccCCc-------hhh-hhccch---hheeeeEEecCCCeEeecCCceEEEEec-cCceee
Confidence 999987 889999999999998754 344 445677 7999999999988888899999999999 688888
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEe
Q 003871 673 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 752 (790)
Q Consensus 673 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s 752 (790)
...+ |...|++++..+++..++++++|+++++|+.. ++.+.+..+ ...+| ++.+-+ +|. +++|+
T Consensus 214 ~~~g--htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--------ttsiW--sa~~L~-NgD-Ivvg~ 277 (745)
T KOG0301|consen 214 EMHG--HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--------TTSIW--SAKVLL-NGD-IVVGG 277 (745)
T ss_pred eeec--cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--------ccceE--EEEEee-CCC-EEEec
Confidence 8754 79999999988889999999999999999987 666666522 33567 888777 554 67788
Q ss_pred CCCcEEEEecC
Q 003871 753 TNGRVHVIEPL 763 (790)
Q Consensus 753 ~Dg~i~iW~~~ 763 (790)
.||.||||...
T Consensus 278 SDG~VrVfT~~ 288 (745)
T KOG0301|consen 278 SDGRVRVFTVD 288 (745)
T ss_pred cCceEEEEEec
Confidence 99999999876
No 108
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1e-24 Score=219.91 Aligned_cols=285 Identities=13% Similarity=0.114 Sum_probs=224.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcC
Q 003871 372 GRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 451 (790)
Q Consensus 372 ~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~sp 451 (790)
.|...| ..+..| ...+++ .||+. |-|+|||+........+-++.+ ....+.|.++..+|
T Consensus 417 ~HGEvV-------cAvtIS-------~~trhV----yTgGk-gcVKVWdis~pg~k~PvsqLdc--l~rdnyiRSckL~p 475 (705)
T KOG0639|consen 417 AHGEVV-------CAVTIS-------NPTRHV----YTGGK-GCVKVWDISQPGNKSPVSQLDC--LNRDNYIRSCKLLP 475 (705)
T ss_pred ccCcEE-------EEEEec-------CCccee----EecCC-CeEEEeeccCCCCCCccccccc--cCcccceeeeEecC
Confidence 466665 666777 667888 99988 9999999975322222333332 12467899999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEEEE
Q 003871 452 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFS 531 (790)
Q Consensus 452 dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd 531 (790)
||+.|++|+.-.++.|||+.....
T Consensus 476 dgrtLivGGeastlsiWDLAapTp-------------------------------------------------------- 499 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTP-------------------------------------------------------- 499 (705)
T ss_pred CCceEEeccccceeeeeeccCCCc--------------------------------------------------------
Confidence 999999999988899998765322
Q ss_pred CCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcE
Q 003871 532 LETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 610 (790)
Q Consensus 532 ~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I 610 (790)
+....+........+++.+||. ..+++..||.|.|||+.+...++.|+||++.+.||.+++||..|-+|+-|.+|
T Consensus 500 ----rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 500 ----RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred ----chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 1112223333456788999999 88899999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEe
Q 003871 611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 689 (790)
Q Consensus 611 ~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s 689 (790)
|.||++.++......+. ..|.++..+|++.++++| .++.+.+......+ ...+ +.|...|.++.|.
T Consensus 576 RcWDlregrqlqqhdF~----------SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyql--hlheScVLSlKFa 642 (705)
T KOG0639|consen 576 RCWDLREGRQLQQHDFS----------SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQL--HLHESCVLSLKFA 642 (705)
T ss_pred eehhhhhhhhhhhhhhh----------hhheecccCCCccceeeecccCcEEEEecCCcc-ceee--cccccEEEEEEec
Confidence 99999997644333332 689999999999999998 77888888775333 2233 3478999999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEec
Q 003871 690 CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 690 ~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
+-|+++++.+.|+.+..|...-|..+.... .... ++++..+- |.++++|||.|....||.+
T Consensus 643 ~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~Ss--VlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 643 YCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSS--VLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCceeeecCchhhhhhccCccccceeecc---------ccCc--ceeeeecc-CceEEEecCCCcceEEEEE
Confidence 999999999999999999999887766543 1334 44888888 7899999999998888875
No 109
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.3e-24 Score=203.30 Aligned_cols=288 Identities=14% Similarity=0.141 Sum_probs=234.0
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.||.+.|+.++.....+.+.+++.|.+.+||.++++.+ +.+ ..+|.+.|+++.|+
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C--------------------L~~---Y~GH~GSVNsikfh~s 201 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC--------------------LAT---YTGHTGSVNSIKFHNS 201 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccccc--------------------eee---ecccccceeeEEeccc
Confidence 37999999999988888888999999999998887655 222 23899999999999
Q ss_pred CcEEEEec-CCeEEEEEC------CC------------------------------C----cEEEEEcCCCCCeEEEEEc
Q 003871 516 GSHLFSAS-GGKISIFSL------ET------------------------------F----QTLATFANPPPIATYFILL 554 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~------~~------------------------------~----~~~~~~~~~~~~v~~l~~s 554 (790)
+.++++++ |++..||.. .. + .++..+.+|...|.+..|-
T Consensus 202 ~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL 281 (481)
T KOG0300|consen 202 GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL 281 (481)
T ss_pred cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh
Confidence 77888888 899999962 10 0 1234567888999999999
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCC
Q 003871 555 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 633 (790)
Q Consensus 555 ~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 633 (790)
..| .+++++.|.+..+||+++|+++..+.||....+.+.-+|..+++++++.|.+.++||++.. ...+. +..||
T Consensus 282 ~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea----I~sV~-VFQGH 356 (481)
T KOG0300|consen 282 AGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA----IQSVA-VFQGH 356 (481)
T ss_pred cCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh----cceee-eeccc
Confidence 989 9999999999999999999999999999999999999999999999999999999999851 12333 56688
Q ss_pred CCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCc-eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003871 634 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 634 ~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
. ..|+++.|..+.+.+..+.|.+|++||+++.+ ++.++.. ..++..++.+..+..|+.--.+..|++||+...
T Consensus 357 t---dtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 357 T---DTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred c---cceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 7 79999999988765555689999999998754 5677754 788999999999999999999999999999876
Q ss_pred eEEEEeccccccCCCCcccccceEEEEEecCCC--CEEEEEeCCCcEEEEecCCCc
Q 003871 713 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEP--NRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 713 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~--~~las~s~Dg~i~iW~~~~~~ 766 (790)
++- .+. .....|| ...|. |++|.. +. .-|.++|-|..+.=|++..+.
T Consensus 431 Rla-RlP--rtsRqgH-rRMV~--c~AW~e-ehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 431 RLA-RLP--RTSRQGH-RRMVT--CCAWLE-EHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred ccc-cCC--ccccccc-ceeee--eeeccc-cCcccccccccccceeeeeEecccC
Confidence 543 221 1123366 44555 999976 33 358899999999999987653
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.4e-23 Score=210.83 Aligned_cols=294 Identities=14% Similarity=0.087 Sum_probs=228.4
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCC---Cceeeeeccc-CCCCCCeEEEEe
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS---SKLVMTNDIA-ADPKDSISCFAL 514 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~---~~~~~~~~~~-~~~~~~V~~l~~ 514 (790)
.|.-+|.+++++|++++.++++.+++|.=|++.++.... .+|... .......... .+|...+.+++.
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~---------~i~~~~ev~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDR---------YIIERDEVLKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccc---------cccccchhhhhccCCCCcccccccceeEEEEE
Confidence 488999999999999999999999999999998765400 011110 0001111111 268899999999
Q ss_pred c--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEE
Q 003871 515 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 590 (790)
Q Consensus 515 s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~ 590 (790)
+ |++|++|+ |..|.||+.++.+.++.+.+|.+.|.+++|-..- .+++++.|++|++|+++....+.++-||.+.|.
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVL 290 (479)
T ss_pred cCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcccee
Confidence 9 99999999 9999999999999999999999999999998666 999999999999999998888899999999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCce
Q 003871 591 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH 670 (790)
Q Consensus 591 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~ 670 (790)
++....-++.+-+|+.|+++++|++... .+. +..++. +.+-|++|-.+..++..+.+|.|.+|++.+.++
T Consensus 291 ~IdaL~reR~vtVGgrDrT~rlwKi~ee----sql---ifrg~~---~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGRDRTVRLWKIPEE----SQL---IFRGGE---GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred eechhcccceEEeccccceeEEEecccc----cee---eeeCCC---CCeeeEEEecccceeeccCCceEEEeeecccCc
Confidence 9988877777777889999999999541 122 334444 689999998775544446899999999998888
Q ss_pred eeeecCCCC----------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe----EEEEeccccccCCCCcccccceE
Q 003871 671 TSQLVPDKM----------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE----LRCQINLTAYAQPGTISLELYPL 736 (790)
Q Consensus 671 ~~~~~~~~h----------~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~----~~~~~~~~~~~~~gh~~~~v~~~ 736 (790)
+.+....++ ...|++++..|...++++|+.+|.|++|-+..|- ++..+.. .+-|+
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---------~GfVN-- 429 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---------VGFVN-- 429 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---------ccEEE--
Confidence 776654321 2278999999999999999999999999999882 2333221 22455
Q ss_pred EEEEecCCCCE-EEEEeCCCcEEEEecC
Q 003871 737 VIAAHPLEPNR-IALGLTNGRVHVIEPL 763 (790)
Q Consensus 737 ~v~~sp~d~~~-las~s~Dg~i~iW~~~ 763 (790)
+++|++ +|+. +|..|....+-=|-..
T Consensus 430 sl~f~~-sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 430 SLAFSN-SGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred EEEEcc-CCCEEEEecccccccceeeEe
Confidence 999999 7874 4555555555555443
No 111
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.2e-22 Score=223.70 Aligned_cols=220 Identities=12% Similarity=0.085 Sum_probs=169.0
Q ss_pred CCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCc--------EEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEE
Q 003871 504 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--------TLATFANPPPIATYFILLPQD--LFAFGFDDSSIL 569 (790)
Q Consensus 504 ~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~--------~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~ 569 (790)
+|.++|.+++|+ +++|++|+ |++|++||+.++. .+..+.+|...|.+++|+|++ .+++|+.|++|+
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence 799999999999 57899999 9999999997642 344678899999999999998 567999999999
Q ss_pred EEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCe-----EEEE
Q 003871 570 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-----NHIQ 644 (790)
Q Consensus 570 iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v-----~~i~ 644 (790)
+||+++++.+..+. |...|.+++|+|+|++|++++.|+.|++||+++++.. .++ .+|. +.+ ....
T Consensus 152 IWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-----~tl-~gH~---g~~~s~~v~~~~ 221 (568)
T PTZ00420 152 IWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-----SSF-HIHD---GGKNTKNIWIDG 221 (568)
T ss_pred EEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE-----EEE-eccc---CCceeEEEEeee
Confidence 99999998777775 6678999999999999999999999999999986532 222 3444 232 2334
Q ss_pred EeCCCCEEEE-EeC----CcEEEEECCC-CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 003871 645 FHPDQIHLLS-IHE----GQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 645 ~sp~~~~l~~-~~d----g~I~iwd~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~ 718 (790)
|++++.++++ |.| ++|+|||+++ ++++..+..+.+...+......++|.++++|+.|+.|++|++..+.... +
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~-l 300 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRK-V 300 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEe-e
Confidence 5688888887 544 3799999985 5666665443333444444445668999999999999999998875322 2
Q ss_pred ccccccCCCCcccccceEEEEEec
Q 003871 719 NLTAYAQPGTISLELYPLVIAAHP 742 (790)
Q Consensus 719 ~~~~~~~~gh~~~~v~~~~v~~sp 742 (790)
. . .++..++. +++|.|
T Consensus 301 ~--~----~~s~~p~~--g~~f~P 316 (568)
T PTZ00420 301 N--E----YKSCSPFR--SFGFLP 316 (568)
T ss_pred c--c----cccCCCcc--ceEEcc
Confidence 2 1 22345566 889999
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2e-23 Score=198.98 Aligned_cols=269 Identities=12% Similarity=0.107 Sum_probs=204.6
Q ss_pred CCCceEEEEEcCC-CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C
Q 003871 440 FGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 440 h~~~V~~l~~spd-g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
..+.|.+++|||. ...+++++-||+||+|+++.... .... ....|.++|.+++|+ |
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~--------------------~~~k-a~~~~~~PvL~v~Wsddg 84 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ--------------------LVPK-AQQSHDGPVLDVCWSDDG 84 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCc--------------------ccch-hhhccCCCeEEEEEccCC
Confidence 4788999999994 45555777799999999986322 1110 112589999999999 8
Q ss_pred cEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEE
Q 003871 517 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 592 (790)
Q Consensus 517 ~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g---~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l 592 (790)
..+++|+ |+.+++||+.+++ ...+..|..+|.++.|-+.. .|++||.|++|+.||.+...++.++. -..++.++
T Consensus 85 skVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 85 SKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred ceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 8888888 9999999999995 55667899999999998766 89999999999999999988888776 34567776
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCcee
Q 003871 593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT 671 (790)
Q Consensus 593 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~ 671 (790)
..- ..+++++..++.|.+|+++++..... .+. +|..-.++|++..+|....+.| -+|.+-|..+..+...
T Consensus 163 Dv~--~pm~vVata~r~i~vynL~n~~te~k-~~~------SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 163 DVL--YPMAVVATAERHIAVYNLENPPTEFK-RIE------SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK 233 (347)
T ss_pred hcc--CceeEEEecCCcEEEEEcCCCcchhh-hhc------CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc
Confidence 553 34788899999999999987542211 111 1111578999999888777774 8999999988876332
Q ss_pred --eeecCCCC-------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEec
Q 003871 672 --SQLVPDKM-------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 742 (790)
Q Consensus 672 --~~~~~~~h-------~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 742 (790)
.+|+.+.. -..|.+++|+|.-..|+|+|.||++.+||-+....++.... +..+|. +++|+.
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~--------~~qpIt--cc~fn~ 303 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET--------HPQPIT--CCSFNR 303 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc--------CCCccc--eeEecC
Confidence 23333211 23578899999988999999999999999887665555432 255777 999999
Q ss_pred CCCCEEEEE
Q 003871 743 LEPNRIALG 751 (790)
Q Consensus 743 ~d~~~las~ 751 (790)
+|.++|-+
T Consensus 304 -~G~ifaYA 311 (347)
T KOG0647|consen 304 -NGSIFAYA 311 (347)
T ss_pred -CCCEEEEE
Confidence 89988765
No 113
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.7e-24 Score=223.99 Aligned_cols=339 Identities=13% Similarity=0.099 Sum_probs=258.6
Q ss_pred CcccccccccchhhhhchhhhhcCccccccccCccccc--h----hhhhhhhccCCCccccccccCCC-------CCCCc
Q 003871 279 QKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDK--S----RLLSLIKQIMDWWVPYCINVMPN-------ANNET 345 (790)
Q Consensus 279 ~~l~s~~~d~v~l~~~~~~~~~~~~~la~~i~iwd~~~--~----~~~~~l~~h~~~v~v~~i~fspd-------~~d~~ 345 (790)
+++.||+.| |.|++|+... + ..+..++.|.++|+ .++...+ +.|.+
T Consensus 38 ryLfTgGRD-------------------g~i~~W~~~~d~~~~s~~~~asme~HsDWVN--DiiL~~~~~tlIS~SsDtT 96 (735)
T KOG0308|consen 38 RYLFTGGRD-------------------GIIRLWSVTQDSNEPSTPYIASMEHHSDWVN--DIILCGNGKTLISASSDTT 96 (735)
T ss_pred ceEEecCCC-------------------ceEEEeccccccCCcccchhhhhhhhHhHHh--hHHhhcCCCceEEecCCce
Confidence 578999999 7777777642 2 25788999999988 8888776 89999
Q ss_pred ceeeeccCCCc--ccccccccCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCcccceeccCCCceEeeecc
Q 003871 346 ISLKDFPTVSN--LRYASSILTDKPNQEGRPLDASSGDDSNDSSCF-NDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQ 422 (790)
Q Consensus 346 i~l~iwd~~~g--~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~f-s~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~ 422 (790)
|+ +|+...+ -|+ .++..|.+.| .|+++ . ++...+ |+||-|+.|.+||++
T Consensus 97 VK--~W~~~~~~~~c~--------stir~H~DYV-------kcla~~a-------k~~~lv----aSgGLD~~IflWDin 148 (735)
T KOG0308|consen 97 VK--VWNAHKDNTFCM--------STIRTHKDYV-------KCLAYIA-------KNNELV----ASGGLDRKIFLWDIN 148 (735)
T ss_pred EE--EeecccCcchhH--------hhhhcccchh-------eeeeecc-------cCceeE----EecCCCccEEEEEcc
Confidence 99 9999888 576 8999999999 99998 4 667777 999999999999998
Q ss_pred ccCC-----CCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceee
Q 003871 423 LINE-----PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVM 497 (790)
Q Consensus 423 ~~~~-----~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~ 497 (790)
.+.. ......-.+. .|+...|++++-++.|..+++|+..+.+++||..+... .+
T Consensus 149 ~~~~~l~~s~n~~t~~sl~-sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k--------------------im 207 (735)
T KOG0308|consen 149 TGTATLVASFNNVTVNSLG-SGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK--------------------IM 207 (735)
T ss_pred CcchhhhhhccccccccCC-CCCccceeeeecCCcceEEEecCcccceEEeccccccc--------------------ee
Confidence 5422 1112111121 37899999999999999999999999999998776433 33
Q ss_pred eecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeC
Q 003871 498 TNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP 573 (790)
Q Consensus 498 ~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~ 573 (790)
. ..+|+..|.++..+ |..+++++ ||+|++||+...+|+.++..|...|+++..+|+= .+++|+.||.|+.-|+
T Consensus 208 k---LrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 208 K---LRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred e---eeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence 3 23899999999999 88999999 9999999999999999999999999999999877 9999999999999999
Q ss_pred CCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEE
Q 003871 574 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 653 (790)
Q Consensus 574 ~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~ 653 (790)
++......+-....+|..+..+.+.+-+-+++.|+.|+-|-.+. ...+++.+....
T Consensus 285 ~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~------------------------~~~l~~s~~~~~ 340 (735)
T KOG0308|consen 285 RNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP------------------------DIALSVSGDLDF 340 (735)
T ss_pred CCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc------------------------ccccccCCCCCc
Confidence 98533333333456777887776555557778899999887654 112333444444
Q ss_pred EEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 003871 654 SIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 654 ~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~ 718 (790)
.+.|......+.. ..+-..+.+ ..++..-+.-.|.+.++|-...|.+.+||+-.+..+..+
T Consensus 341 ~~T~~~~~~~~~~-~tp~~vi~G---g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~ 401 (735)
T KOG0308|consen 341 FSTDSNNHSCDLT-NTPDSVIPG---GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDF 401 (735)
T ss_pred ccccCCCcccccc-CCCceeccC---chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhc
Confidence 4444444444442 233333432 556666677788899999999999999999876665544
No 114
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.6e-23 Score=219.91 Aligned_cols=276 Identities=17% Similarity=0.195 Sum_probs=226.2
Q ss_pred hhhhhhhhccCCCccccccccCCC------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCC-CCC
Q 003871 317 SRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDS-SCF 389 (790)
Q Consensus 317 ~~~~~~l~~h~~~v~v~~i~fspd------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~-~~f 389 (790)
.++-+.+.+|...|. .+++.++ +.|++++ +|+...++.+ ....+.+|.+.| .+ ++|
T Consensus 4 Y~ls~~l~gH~~DVr--~v~~~~~~~i~s~sRd~t~~--vw~~~~~~~l------~~~~~~~~~g~i-------~~~i~y 66 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVR--AVAVTDGVCIISGSRDGTVK--VWAKKGKQYL------ETHAFEGPKGFI-------ANSICY 66 (745)
T ss_pred ceeEEEeccCccchh--eeEecCCeEEeecCCCCcee--eeeccCcccc------cceecccCccee-------ecccee
Confidence 345667889998877 7777776 8899999 9998766654 124567788877 44 787
Q ss_pred CCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 003871 390 NDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 469 (790)
Q Consensus 390 s~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~ 469 (790)
. ..|+-.+ ++|+.|+++.+|.... ......+ .||+..|.+++...++. +++||-|.++++|.
T Consensus 67 ~------e~~~~~l----~~g~~D~~i~v~~~~~---~~P~~~L----kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~ 128 (745)
T KOG0301|consen 67 A------ESDKGRL----VVGGMDTTIIVFKLSQ---AEPLYTL----KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR 128 (745)
T ss_pred c------cccCcce----EeecccceEEEEecCC---CCchhhh----hccccceeeeecCCcCc-eEecccccceEEec
Confidence 5 1234457 9999999999999974 3333333 37999999999999988 99999999999997
Q ss_pred cCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCC
Q 003871 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPI 547 (790)
Q Consensus 470 ~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~ 547 (790)
...-.. ...+|+.+|++++.- .+.+++|+ |.+|++|.- ++++++|.+|.+-
T Consensus 129 ~~~l~~-------------------------~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~ 181 (745)
T KOG0301|consen 129 IGELVY-------------------------SLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDC 181 (745)
T ss_pred chhhhc-------------------------ccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccchhh
Confidence 654211 134899999999988 66889999 999999985 7889999999999
Q ss_pred eEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeee
Q 003871 548 ATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 627 (790)
Q Consensus 548 v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~ 627 (790)
|+.+++-+++.++++++||.|+.|++ +|+++..+.+|+..|.++...+++..+++++.|+++++|+... ....+.
T Consensus 182 VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e----~~q~I~ 256 (745)
T KOG0301|consen 182 VRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE----CVQVIT 256 (745)
T ss_pred eeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc----eEEEEe
Confidence 99999998888899999999999998 6899999999999999999888888999999999999999873 223343
Q ss_pred eeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECC
Q 003871 628 SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 666 (790)
Q Consensus 628 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~ 666 (790)
++. ..|+++.+-++|..++.|+||.|+||...
T Consensus 257 -lPt------tsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 257 -LPT------TSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred -cCc------cceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 332 37999999999998888899999999876
No 115
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=8.2e-23 Score=193.63 Aligned_cols=300 Identities=16% Similarity=0.170 Sum_probs=222.6
Q ss_pred CCCCceEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCc--cccccccccccccccCCCceeeeecccCCCCCCeEEEEec
Q 003871 439 SFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ--SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 515 (790)
Q Consensus 439 ~h~~~V~~l~~sp-dg~~l~s~~~dg~i~vw~~~~~~~--~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s 515 (790)
.|.+.|.++...+ .|+|+++|+.||.|.+||+++... ..+-..... ..+......+|.-.|.++.|-
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~----------c~v~~~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHK----------CIVAKQHENGHKYAISSAIWY 110 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehee----------eeccccCCccceeeeeeeEEe
Confidence 4889999999987 689999999999999999987553 111110000 011112233688899999988
Q ss_pred ---CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceEEEEcCCCC
Q 003871 516 ---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 587 (790)
Q Consensus 516 ---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g----~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~ 587 (790)
...+.+++ |.++++||..+-+....|+ -.+.|.+-+++|-. ++|+|..|-.|++.|+.+|...+.+.||.+
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence 56777777 9999999999988877776 45668888888865 888999999999999999999999999999
Q ss_pred CEEEEEEeCCCCE-EEEEeCCCcEEEEECCCCc-e-e-----ece--eeeeeccCCCCCCCCeEEEEEeCCCCEEEE-Ee
Q 003871 588 RITCLAYSLSLNV-LVSSGADAQLCVWDAVGWK-K-L-----CSK--FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH 656 (790)
Q Consensus 588 ~v~~l~~spdg~~-l~s~s~dg~I~vwd~~~~~-~-~-----~~~--~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~ 656 (790)
.|.++.|+|...+ |++|+.||.|++||++... . . ..+ ++-.....|. +.+..++|+.++.++++ +.
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~---gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHY---GKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccc---ceeeeeeecccchhhhhccC
Confidence 9999999997665 7899999999999998631 0 0 000 1111122344 79999999999999998 69
Q ss_pred CCcEEEEECCCCceeee-ecCCCCC---CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccc
Q 003871 657 EGQIDVYEAPTLNHTSQ-LVPDKMD---LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 732 (790)
Q Consensus 657 dg~I~iwd~~~~~~~~~-~~~~~h~---~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~ 732 (790)
|..+++|+..+|+-... +....|. ..-..+. +.+...++---.++.+.++++-.|+.+..+. +| ...
T Consensus 267 d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~-------~h-~k~ 337 (397)
T KOG4283|consen 267 DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS-------TH-LKR 337 (397)
T ss_pred ccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee-------cc-cce
Confidence 99999999988764222 1111111 1111122 3344455555567999999999999998887 44 445
Q ss_pred cceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 733 LYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 733 v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
+. +.+|-| +-....+|..|+.|.-|-+.-
T Consensus 338 i~--c~~~~~-~fq~~~tg~~d~ni~~w~p~l 366 (397)
T KOG4283|consen 338 IN--CAAYRP-DFEQCFTGDMNGNIYMWSPAL 366 (397)
T ss_pred ee--EEeecC-chhhhhccccCCccccccccc
Confidence 55 888989 788899999999999998843
No 116
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.6e-22 Score=208.15 Aligned_cols=287 Identities=16% Similarity=0.220 Sum_probs=229.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEE
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 519 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l 519 (790)
..+|+++||+.+.+.||.+-.||.|.+|++..+- +....+..+.+..|.+++|+ +..|
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w---------------------~~~~vi~g~~drsIE~L~W~e~~RL 83 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW---------------------FLEPVIHGPEDRSIESLAWAEGGRL 83 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc---------------------eeeEEEecCCCCceeeEEEccCCeE
Confidence 5789999999999999999999999999987632 23333444678899999999 8888
Q ss_pred EEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE--EEcCCCCCEEEEEEe
Q 003871 520 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYS 595 (790)
Q Consensus 520 ~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~--~l~~h~~~v~~l~~s 595 (790)
++.+ +|.|.-||+.+++....+....+.|++++.+|.+ .+++|++||.++.++...++... .+...+++|.++.|+
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN 163 (691)
T ss_pred EeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec
Confidence 8888 9999999999999999999999999999999999 99999999988888887776543 344456899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeceeee--eeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceee
Q 003871 596 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH--SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 672 (790)
Q Consensus 596 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~--~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~ 672 (790)
|++..+++|+.||.|++||...+........+ .+..+.. .-|+++.|-.++ .|++| +.|+|.+||...+.+++
T Consensus 164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~---~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiq 239 (691)
T KOG2048|consen 164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREP---TIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQ 239 (691)
T ss_pred CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCc---eEEEEEEEeecC-cEEEecCCceEEEEcccCcchhh
Confidence 99999999999999999999987644322222 1112111 568888888776 46665 78999999999999999
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEe
Q 003871 673 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 752 (790)
Q Consensus 673 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s 752 (790)
.+.. |...|.+++..+++.+++++|.|+.|.-|...+.....+.. .+..+|...+. +++..+ + .+++||
T Consensus 240 S~~~--h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~----~~r~~h~hdvr--s~av~~-~--~l~sgG 308 (691)
T KOG2048|consen 240 SHSC--HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN----SRRDLHAHDVR--SMAVIE-N--ALISGG 308 (691)
T ss_pred hhhh--hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeee----ccccCCcccce--eeeeec-c--eEEecc
Confidence 8865 78999999999999999999999999999888764421111 11233466777 777776 3 889999
Q ss_pred CCCcEEEEecC
Q 003871 753 TNGRVHVIEPL 763 (790)
Q Consensus 753 ~Dg~i~iW~~~ 763 (790)
.|+.+.+=...
T Consensus 309 ~d~~l~i~~s~ 319 (691)
T KOG2048|consen 309 RDFTLAICSSR 319 (691)
T ss_pred eeeEEEEcccc
Confidence 99888775543
No 117
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=7.2e-23 Score=195.16 Aligned_cols=275 Identities=13% Similarity=0.120 Sum_probs=204.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC
Q 003871 382 DSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ 461 (790)
Q Consensus 382 ~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~ 461 (790)
++|.+++|| |....+ ++.+|-|++||+|++.. .+....-.. ..|.++|.+++|+.||..+++|+.
T Consensus 28 DsIS~l~FS-------P~~~~~---~~A~SWD~tVR~wevq~---~g~~~~ka~--~~~~~PvL~v~WsddgskVf~g~~ 92 (347)
T KOG0647|consen 28 DSISALAFS-------PQADNL---LAAGSWDGTVRIWEVQN---SGQLVPKAQ--QSHDGPVLDVCWSDDGSKVFSGGC 92 (347)
T ss_pred cchheeEec-------cccCce---EEecccCCceEEEEEec---CCcccchhh--hccCCCeEEEEEccCCceEEeecc
Confidence 344999999 744444 27999999999999985 222221111 358999999999999999999999
Q ss_pred CCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C--cEEEEec-CCeEEEEECCCCc
Q 003871 462 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G--SHLFSAS-GGKISIFSLETFQ 536 (790)
Q Consensus 462 dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~--~~l~s~s-dg~I~vwd~~~~~ 536 (790)
|+.+++||+.+++. .+. ..|.++|.++.|- . ..|++|+ |.+|+.||.+...
T Consensus 93 Dk~~k~wDL~S~Q~---------------------~~v---~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 93 DKQAKLWDLASGQV---------------------SQV---AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred CCceEEEEccCCCe---------------------eee---eecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence 99999999987543 221 2599999999999 2 3689999 9999999999988
Q ss_pred EEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEE-EEc-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 003871 537 TLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA-KLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWD 614 (790)
Q Consensus 537 ~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~-~l~-~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd 614 (790)
.+.++.- .+.+.++..-.. +++++..++.|.+|+++.+.... ... .-.-.+.+++..+|....+.|+-.|.+.+..
T Consensus 149 pv~t~~L-PeRvYa~Dv~~p-m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~ 226 (347)
T KOG0647|consen 149 PVATLQL-PERVYAADVLYP-MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQY 226 (347)
T ss_pred eeeeeec-cceeeehhccCc-eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEe
Confidence 8888763 455666654322 88888899999999998764322 111 1234588999999888889999999999999
Q ss_pred CCCCceeeceeeeeecc--CCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecC
Q 003871 615 AVGWKKLCSKFLHSFQT--GLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 691 (790)
Q Consensus 615 ~~~~~~~~~~~l~~~~~--~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d 691 (790)
+..+.......++.-.. ........|++|+|+|....|++ |+||+..+||-.....+++.. .|..+|++.+|+.+
T Consensus 227 id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~--~~~qpItcc~fn~~ 304 (347)
T KOG0647|consen 227 IDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE--THPQPITCCSFNRN 304 (347)
T ss_pred cCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC--cCCCccceeEecCC
Confidence 88753322333321110 00001246889999998888888 799999999988776666654 37899999999999
Q ss_pred CCEEEEEE
Q 003871 692 GKCIYVSC 699 (790)
Q Consensus 692 g~~l~sgs 699 (790)
|.+++-+.
T Consensus 305 G~ifaYA~ 312 (347)
T KOG0647|consen 305 GSIFAYAL 312 (347)
T ss_pred CCEEEEEe
Confidence 99887543
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2e-23 Score=193.10 Aligned_cols=253 Identities=12% Similarity=0.110 Sum_probs=198.2
Q ss_pred CCCCCeEEEEec--CcEEEEec-CCeEEEEECCCC---cEEEEEcCCCCCeEEEEEcC--CC-eEEEEeCCCcEEEEeCC
Q 003871 504 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCPC 574 (790)
Q Consensus 504 ~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~---~~~~~~~~~~~~v~~l~~s~--~g-~l~sgs~dg~I~iwd~~ 574 (790)
.|.+.|..+... |..|++++ |++|+|+.++++ +.+.++.+|.++|..++|.. -| +||+++.||.|.||.-.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 588888888877 99999999 999999999764 46788999999999999976 56 99999999999999988
Q ss_pred CCce--EEEEcCCCCCEEEEEEeCC--CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC--
Q 003871 575 TKKT--KAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-- 648 (790)
Q Consensus 575 ~~~~--~~~l~~h~~~v~~l~~spd--g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~-- 648 (790)
+|+- ......|...|++++|.|. |-.|++++.||.|.|.+.++.. ......+...|. -.|++++|.|-
T Consensus 89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g---~w~t~ki~~aH~---~GvnsVswapa~~ 162 (299)
T KOG1332|consen 89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG---GWTTSKIVFAHE---IGVNSVSWAPASA 162 (299)
T ss_pred CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC---Cccchhhhhccc---cccceeeecCcCC
Confidence 7743 3456679999999999995 5679999999999999988631 112223555676 68999999986
Q ss_pred -C-----------CEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC----CEEEEEEcCCeEEEEECCC
Q 003871 649 -Q-----------IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 649 -~-----------~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg----~~l~sgs~dg~i~vwd~~~ 711 (790)
| +.|++ |.|+.|+||+..+++-+..-....|...|+.++|.|.- .+|++++.||+|.||....
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 4 55888 58999999999876433322234589999999999964 5899999999999998763
Q ss_pred CeE--EEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccccccCC
Q 003871 712 LEL--RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 773 (790)
Q Consensus 712 ~~~--~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~~~ 773 (790)
... ..++. +. -...++ .++||+ .|+.|+.++.|+.|.+|.- +.+.+|...+
T Consensus 243 e~e~wk~tll-~~------f~~~~w--~vSWS~-sGn~LaVs~GdNkvtlwke-~~~Gkw~~v~ 295 (299)
T KOG1332|consen 243 EYEPWKKTLL-EE------FPDVVW--RVSWSL-SGNILAVSGGDNKVTLWKE-NVDGKWEEVG 295 (299)
T ss_pred ccCccccccc-cc------CCcceE--EEEEec-cccEEEEecCCcEEEEEEe-CCCCcEEEcc
Confidence 211 11111 10 134577 999999 8999999999999999984 4455676554
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.2e-22 Score=191.78 Aligned_cols=265 Identities=15% Similarity=0.195 Sum_probs=202.4
Q ss_pred eeccCCCceEeeeccccCC-CCceeee----eccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccccc
Q 003871 408 VCAKSLEKSVNLKLQLINE-PSECRTL----LLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 482 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~~-~~~~~~~----~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~ 482 (790)
+.|+....|.=+++.-.++ ...-.+. .+..+.|.+.|++++.+ |.++|+||.|-+|+|||++....
T Consensus 5 IvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q------- 75 (362)
T KOG0294|consen 5 IVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ------- 75 (362)
T ss_pred EEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhh-------
Confidence 6666666666666653220 0011111 11225799999999986 88999999999999999987443
Q ss_pred ccccccccCCCceeeeecccCCCCCCeEEEEec-C---cEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC
Q 003871 483 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G---SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD 557 (790)
Q Consensus 483 ~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~---~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g 557 (790)
-|.++ .|.+.|+++.|. . +.|++|+ ||.|.+|+.....++.++++|.+.|+.++++|.|
T Consensus 76 ----------lg~ll------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~ 139 (362)
T KOG0294|consen 76 ----------LGILL------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG 139 (362)
T ss_pred ----------hccee------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC
Confidence 12222 489999999999 2 3788888 8999999999999999999999999999999999
Q ss_pred -eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCC
Q 003871 558 -LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 636 (790)
Q Consensus 558 -~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~ 636 (790)
+.++.+.|+.++.||+-+|+.-..+.- ....+.+.|+|.|.+++.++.+ .|-+|.+.+... +..+...
T Consensus 140 KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v-----~~~i~~~---- 208 (362)
T KOG0294|consen 140 KLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASV-----FREIENP---- 208 (362)
T ss_pred ceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhH-----hhhhhcc----
Confidence 888889999999999998876555542 2234459999999998888765 788999987432 2211111
Q ss_pred CCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEe--cCCCEEEEEEcCCeEEEEECCCC
Q 003871 637 TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS--CDGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 637 ~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s--~dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
..+.++.|...+ .|++ +.|+.|.+||..+..+...+.. |...|-++.+- |++.||+++|.||.|+|||++..
T Consensus 209 -~r~l~~~~l~~~-~L~vG~d~~~i~~~D~ds~~~~~~~~A--H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 209 -KRILCATFLDGS-ELLVGGDNEWISLKDTDSDTPLTEFLA--HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred -ccceeeeecCCc-eEEEecCCceEEEeccCCCccceeeec--chhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 357777777554 5555 5889999999998888888765 79999999854 67889999999999999999876
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.1e-22 Score=191.79 Aligned_cols=268 Identities=12% Similarity=0.108 Sum_probs=206.7
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcE
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 518 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~ 518 (790)
..+.|.++.|+|.+..|++++.||++++|+...... .. .-.|..++.+++|. ...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l---------------------~~---~~~~~~plL~c~F~d~~~ 67 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL---------------------KL---KFKHGAPLLDCAFADEST 67 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh---------------------hh---heecCCceeeeeccCCce
Confidence 368899999999999999999999999999876422 11 11489999999999 788
Q ss_pred EEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeC
Q 003871 519 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 596 (790)
Q Consensus 519 l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~sp 596 (790)
+++|+ ||.|+.+|+.++... .+..|..+|.|+..++.. .+++|+.|++|++||.+.......+. ....|.++..+
T Consensus 68 ~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~- 144 (323)
T KOG1036|consen 68 IVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS- 144 (323)
T ss_pred EEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc-
Confidence 88888 999999999987644 445699999999999877 99999999999999998755555554 33478888765
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCC----cee
Q 003871 597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL----NHT 671 (790)
Q Consensus 597 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~----~~~ 671 (790)
|+.|++|+.|..|.+||+++... +.+.-...-. ..+.++++-|++.-.++ +-||.|.+=.+... +..
T Consensus 145 -g~~LvVg~~~r~v~iyDLRn~~~----~~q~reS~lk---yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 145 -GNRLVVGTSDRKVLIYDLRNLDE----PFQRRESSLK---YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKK 216 (323)
T ss_pred -CCEEEEeecCceEEEEEcccccc----hhhhccccce---eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhc
Confidence 67899999999999999998432 2221111111 57899999997655555 68999887666544 222
Q ss_pred eeecCCC-------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCC
Q 003871 672 SQLVPDK-------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 744 (790)
Q Consensus 672 ~~~~~~~-------h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d 744 (790)
..|..+. .-.+|.+++|+|--..++||+.||.|.+||+.+.+.++.+.. - ...|. +++|+. +
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~-------~-~~SI~--slsfs~-d 285 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK-------Y-ETSIS--SLSFSM-D 285 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC-------C-CCceE--EEEecc-C
Confidence 2233211 134799999999999999999999999999999888877642 1 22355 999999 8
Q ss_pred CCEEEEEeC
Q 003871 745 PNRIALGLT 753 (790)
Q Consensus 745 ~~~las~s~ 753 (790)
|..||.++.
T Consensus 286 G~~LAia~s 294 (323)
T KOG1036|consen 286 GSLLAIASS 294 (323)
T ss_pred CCeEEEEec
Confidence 999999874
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=4.3e-23 Score=207.64 Aligned_cols=252 Identities=15% Similarity=0.241 Sum_probs=195.0
Q ss_pred CCCCceEEEEEcCCCCEEEE-EeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 439 SFGGRVVRLIYSHSGDFLVA-LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s-~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.|.+.|..+.+.|....+++ .+..+.+.|||....... ....+.+...+...+|...-++++|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~-------------~~~~~~~~Pdl~L~gH~~eg~glsWn~~ 188 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSK-------------PKASGECRPDLRLKGHEKEGYGLSWNRQ 188 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCc-------------ccccccCCCceEEEeecccccccccccc
Confidence 38999999999997765554 556889999998764330 00111111111223688878889999
Q ss_pred -CcEEEEec-CCeEEEEECCCCc-------EEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCC--CCceEEEE
Q 003871 516 -GSHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC--TKKTKAKL 582 (790)
Q Consensus 516 -~~~l~s~s-dg~I~vwd~~~~~-------~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~--~~~~~~~l 582 (790)
...+++++ |++|++||+.... ....+.+|...|..++|++.. .+++++.|+.+.|||++ +.++....
T Consensus 189 ~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~ 268 (422)
T KOG0264|consen 189 QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV 268 (422)
T ss_pred cceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence 55677777 8999999997532 345678999999999999988 99999999999999999 55666778
Q ss_pred cCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCE-EEE-EeCCc
Q 003871 583 KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH-LLS-IHEGQ 659 (790)
Q Consensus 583 ~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~-l~~-~~dg~ 659 (790)
.+|++.|+|++|+| ++..||+||.|++|.+||+++-. .++. ...+|. ..|.++.|+|+... ||+ |.|+.
T Consensus 269 ~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~----~~lh-~~e~H~---dev~~V~WSPh~etvLASSg~D~r 340 (422)
T KOG0264|consen 269 KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN----KPLH-TFEGHE---DEVFQVEWSPHNETVLASSGTDRR 340 (422)
T ss_pred cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc----cCce-eccCCC---cceEEEEeCCCCCceeEecccCCc
Confidence 88999999999999 67789999999999999999843 3555 445666 79999999998654 455 48999
Q ss_pred EEEEECCCCcee------------eeecCCCCCCCeEEEEEecCCCE-EEEEEcCCeEEEEECCC
Q 003871 660 IDVYEAPTLNHT------------SQLVPDKMDLPITYATYSCDGKC-IYVSCKSGHVKVFDTST 711 (790)
Q Consensus 660 I~iwd~~~~~~~------------~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~dg~i~vwd~~~ 711 (790)
+.+||+..-... ..|...+|...|..+.|+|+..+ |++.++|+.+.||.+..
T Consensus 341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 999998642211 12555578999999999998875 66888999999999863
No 122
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=4.4e-23 Score=228.16 Aligned_cols=288 Identities=12% Similarity=0.164 Sum_probs=215.5
Q ss_pred ccCCCccccccccCCC-------C--CCCcceeeeccCCCcc----cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 325 QIMDWWVPYCINVMPN-------A--NNETISLKDFPTVSNL----RYASSILTDKPNQEGRPLDASSGDDSNDSSCFND 391 (790)
Q Consensus 325 ~h~~~v~v~~i~fspd-------~--~d~~i~l~iwd~~~g~----~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~ 391 (790)
+|.+.. +.+|..+|| + .|+.++ ||+...-- ..-.++-....+...|.+.| +|+.|+
T Consensus 10 ~H~~~~-IfSIdv~pdg~~~aTgGq~~d~~~~--iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv-------~CVR~S- 78 (942)
T KOG0973|consen 10 NHNEKS-IFSIDVHPDGVKFATGGQVLDGGIV--IWSQDPVLDEKEEKNENLPKHLCTMDDHDGSV-------NCVRFS- 78 (942)
T ss_pred ccCCee-EEEEEecCCceeEecCCccccccce--eeccccccchhhhhhcccchhheeeccccCce-------eEEEEC-
Confidence 344433 448888888 3 788999 88764211 00000000014456788888 999999
Q ss_pred CCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCc--------------eeeeeccCCCCCCceEEEEEcCCCCEEE
Q 003871 392 NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE--------------CRTLLLPDNSFGGRVVRLIYSHSGDFLV 457 (790)
Q Consensus 392 ~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~--------------~~~~~l~~~~h~~~V~~l~~spdg~~l~ 457 (790)
|||++| |+||.|+.|.||+..+...... +.. .+ .+|.+.|..++|+|++.+|+
T Consensus 79 ------~dG~~l----AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~-~l--~~H~~DV~Dv~Wsp~~~~lv 145 (942)
T KOG0973|consen 79 ------PDGSYL----ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVS-IL--RGHDSDVLDVNWSPDDSLLV 145 (942)
T ss_pred ------CCCCeE----eeccCcceEEEeeecccCCcccccccccccccceeeEEE-EE--ecCCCccceeccCCCccEEE
Confidence 999999 9999999999999873110111 111 11 47999999999999999999
Q ss_pred EEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCC
Q 003871 458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET 534 (790)
Q Consensus 458 s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~ 534 (790)
+++.|++|.+||..+.. ..+ ...+|.+.|-.+.|. |+|+++-+ |++|++|++.+
T Consensus 146 S~s~DnsViiwn~~tF~---------------------~~~--vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAKTFE---------------------LLK--VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD 202 (942)
T ss_pred EecccceEEEEccccce---------------------eee--eeecccccccceEECCccCeeeeecCCceEEEEEccc
Confidence 99999999999987632 222 234899999999999 99999999 89999999888
Q ss_pred CcEEEEEcCCCC------CeEEEEEcCCC-eEEEEeC----CCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCC-----C
Q 003871 535 FQTLATFANPPP------IATYFILLPQD-LFAFGFD----DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS-----L 598 (790)
Q Consensus 535 ~~~~~~~~~~~~------~v~~l~~s~~g-~l~sgs~----dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd-----g 598 (790)
....+.+..+.. .+..+.||||| +|+++.. -.++.|.+..+-+.-..|-||.+++.+++|+|. .
T Consensus 203 w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~ 282 (942)
T KOG0973|consen 203 WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNN 282 (942)
T ss_pred ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcccc
Confidence 778777765533 46889999999 8887632 237888888777778889999999999999881 1
Q ss_pred C------------EEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEEC
Q 003871 599 N------------VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 665 (790)
Q Consensus 599 ~------------~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~ 665 (790)
+ .+|+|+.|++|.||..... +++-.+..-.. ..|..++|+|||..|++ +.||+|.++.+
T Consensus 283 ~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-----RPl~vi~~lf~---~SI~DmsWspdG~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 283 KNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-----RPLFVIHNLFN---KSIVDMSWSPDGFSLFACSLDGTVALIHF 354 (942)
T ss_pred ccCCccCCCcceEEEEEecCCccEEEEecCCC-----Cchhhhhhhhc---CceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence 2 5789999999999998662 33321211112 58999999999987776 69999999998
Q ss_pred CC
Q 003871 666 PT 667 (790)
Q Consensus 666 ~~ 667 (790)
+.
T Consensus 355 ee 356 (942)
T KOG0973|consen 355 EE 356 (942)
T ss_pred ch
Confidence 74
No 123
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=5.5e-21 Score=201.47 Aligned_cols=273 Identities=16% Similarity=0.126 Sum_probs=195.4
Q ss_pred ceeccCCCceEeeeccccCCCCce-eeeeccCCCCCCceEEEEEcCCCCEEE-EEeCCCcEEEEecCCCCcccccccccc
Q 003871 407 AVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNM 484 (790)
Q Consensus 407 ~at~s~d~~i~iwd~~~~~~~~~~-~~~~l~~~~h~~~V~~l~~spdg~~l~-s~~~dg~i~vw~~~~~~~~~g~~~~~~ 484 (790)
+++++.|+.+++||+.+ +.+ ..+. + ...+.+++|+|+|+.++ +++.++.+++||..++..
T Consensus 4 ~~s~~~d~~v~~~d~~t----~~~~~~~~----~-~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--------- 65 (300)
T TIGR03866 4 YVSNEKDNTISVIDTAT----LEVTRTFP----V-GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--------- 65 (300)
T ss_pred EEEecCCCEEEEEECCC----CceEEEEE----C-CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE---------
Confidence 48999999999999973 333 3322 2 23467899999999874 556789999999775432
Q ss_pred ccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEe-c-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eE
Q 003871 485 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF 559 (790)
Q Consensus 485 ~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~-s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l 559 (790)
..... .+ ..+..++|+ ++.++++ . ++.|++||+.+++.+..+.. ...+.+++|+|+| .+
T Consensus 66 ------------~~~~~--~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 66 ------------IGTLP--SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIV 129 (300)
T ss_pred ------------EEecc--CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEE
Confidence 11111 12 234567787 6666544 4 79999999998888777753 3346789999999 88
Q ss_pred EEEeCCC-cEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCceeeceeeeeeccCCCCCC
Q 003871 560 AFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 637 (790)
Q Consensus 560 ~sgs~dg-~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~-s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~ 637 (790)
++++.++ .+.+||..+++....+.. ...+.+++|+|++++++++ ..++.|++||+++++........ ....+. ..
T Consensus 130 ~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~~~~-~~ 206 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE-IPGVHP-EA 206 (300)
T ss_pred EEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec-cccccc-cc
Confidence 8887765 577889988877655432 2346789999999988554 46899999999986543322111 111110 00
Q ss_pred CCeEEEEEeCCCCEEEE--EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE-EcCCeEEEEECCCCeE
Q 003871 638 TIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLEL 714 (790)
Q Consensus 638 ~~v~~i~~sp~~~~l~~--~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg-s~dg~i~vwd~~~~~~ 714 (790)
.....++|+|+++++++ +.++.+.+||.++++.+..+. +...+.+++|+|+|++|+++ +.+|.|.+||+.+++.
T Consensus 207 ~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 207 VQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 13456899999998665 356789999999888776653 24578999999999999876 4689999999999999
Q ss_pred EEEec
Q 003871 715 RCQIN 719 (790)
Q Consensus 715 ~~~~~ 719 (790)
+..+.
T Consensus 284 ~~~~~ 288 (300)
T TIGR03866 284 IKSIK 288 (300)
T ss_pred EEEEE
Confidence 88876
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=203.97 Aligned_cols=245 Identities=13% Similarity=0.128 Sum_probs=192.8
Q ss_pred CcEEEEec--CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEE
Q 003871 516 GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 592 (790)
Q Consensus 516 ~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l 592 (790)
+.+++++. ...|.+|.+..........--.++|.+++-+|+| +++.|+..|.+++|.+.+|..+..+.+|-..|+++
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL 129 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCL 129 (476)
T ss_pred hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEE
Confidence 56788877 4689999987654444333456789999999999 88888899999999999999999999999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCC----ceeeceeeeeeccCCCCCCCCeEEEEEeCC--CCEEEE-EeCCcEEEEEC
Q 003871 593 AYSLSLNVLVSSGADAQLCVWDAVGW----KKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLS-IHEGQIDVYEA 665 (790)
Q Consensus 593 ~~spdg~~l~s~s~dg~I~vwd~~~~----~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~--~~~l~~-~~dg~I~iwd~ 665 (790)
.|+-||.+|++||.||.|.+|++-.- ......++. ...+|. -+|+++...+. ..++++ +.|.++++||+
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~-~f~~Ht---lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH-IFSDHT---LSITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee-eeccCc---ceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence 99999999999999999999987541 011234455 445666 68999888764 345666 69999999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe--EE----EEecc---ccccCCCCcc-cccce
Q 003871 666 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE--LR----CQINL---TAYAQPGTIS-LELYP 735 (790)
Q Consensus 666 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~--~~----~~~~~---~~~~~~gh~~-~~v~~ 735 (790)
..+..+.++.. ...+.+++.+|-++.+++|+++|.|.+.++.+-. .. +.... ......||.+ ..|+
T Consensus 206 S~g~LLlti~f---p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT- 281 (476)
T KOG0646|consen 206 SLGVLLLTITF---PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT- 281 (476)
T ss_pred ccceeeEEEec---CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee-
Confidence 99999988864 7889999999999999999999999999876532 11 00000 0111236644 3566
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEecCCCccccc
Q 003871 736 LVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 770 (790)
Q Consensus 736 ~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~ 770 (790)
|++.+- ||..|++|+.||.|+|||+.+.++.-.
T Consensus 282 -cLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 282 -CLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred -EEEEec-CccEEEeeCCCCCEEEEecchHHHHHH
Confidence 888888 899999999999999999999876643
No 125
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.7e-23 Score=191.34 Aligned_cols=246 Identities=17% Similarity=0.194 Sum_probs=194.2
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
..|.+.|..+...--|++|+++++|++|+|+...++.. ..++. .+.+|.+||..++|.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------s~ll~--~L~Gh~GPVwqv~wahP 67 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------SKLLA--ELTGHSGPVWKVAWAHP 67 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------ceeee--EecCCCCCeeEEeeccc
Confidence 36888898888888899999999999999999876432 01222 224899999999998
Q ss_pred --CcEEEEec-CCeEEEEECCCCcE--EEEEcCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCC---ceEEEEcC
Q 003871 516 --GSHLFSAS-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTK---KTKAKLKG 584 (790)
Q Consensus 516 --~~~l~s~s-dg~I~vwd~~~~~~--~~~~~~~~~~v~~l~~s~~g---~l~sgs~dg~I~iwd~~~~---~~~~~l~~ 584 (790)
|.+|++++ ||.|.||.-++++- ...+..|...|++++|.|.+ .|++|+.||.|.+.+.++. ...+....
T Consensus 68 k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 68 KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence 99999999 99999999988743 33456899999999999987 8999999999999988754 22334566
Q ss_pred CCCCEEEEEEeCC---C-----------CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCC-
Q 003871 585 HQNRITCLAYSLS---L-----------NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ- 649 (790)
Q Consensus 585 h~~~v~~l~~spd---g-----------~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~- 649 (790)
|.-.|+++.|.|- | +.|++|+.|..|+||+...+.- .+.....+|. +.|+.++|.|.-
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w----~~e~~l~~H~---dwVRDVAwaP~~g 220 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW----KLERTLEGHK---DWVRDVAWAPSVG 220 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch----hhhhhhhhcc---hhhhhhhhccccC
Confidence 9999999999985 5 5799999999999999988632 2232455777 799999999964
Q ss_pred ---CEEEE-EeCCcEEEEECCCC--ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 650 ---IHLLS-IHEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 650 ---~~l~~-~~dg~I~iwd~~~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
.+||+ +.||++.||-.+.- .-..++. ......+.++.||+.|+.|+.++.|+.|.+|.-..
T Consensus 221 l~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 221 LPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CCceeeEEecCCCcEEEEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 46777 48999999987521 1111111 11367799999999999999999999999997543
No 126
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.6e-22 Score=189.82 Aligned_cols=286 Identities=17% Similarity=0.177 Sum_probs=212.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEE
Q 003871 444 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 521 (790)
Q Consensus 444 V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s 521 (790)
-.++.|++.|.+||+|..||.+.|||+.+... ++ ...+|..+|++++|+ |+.|++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------ar-----~lsaH~~pi~sl~WS~dgr~Llt 82 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------AR-----MLSAHVRPITSLCWSRDGRKLLT 82 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch------------------hh-----hhhccccceeEEEecCCCCEeee
Confidence 78999999999999999999999999887332 01 123799999999999 999999
Q ss_pred ec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcC-CC----CCEEEEE
Q 003871 522 AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG-HQ----NRITCLA 593 (790)
Q Consensus 522 ~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~-h~----~~v~~l~ 593 (790)
++ |..|.+||+..|.+++.+. ...+|+.+.|+|.. ..++.-.+..-.+.++..++. ..+.. .. ....+..
T Consensus 83 sS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 83 SSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGV 160 (405)
T ss_pred ecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCcccccccccccc
Confidence 99 9999999999999998887 67789999999988 444444444455556554321 11211 11 1122346
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCC----
Q 003871 594 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL---- 668 (790)
Q Consensus 594 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~---- 668 (790)
|.+.|+++++|...|.+.++|..+-+.+....+.+ . ..|.++.++..|+.|+. +.|+.|+.|+++.-
T Consensus 161 fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-----~---~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~ 232 (405)
T KOG1273|consen 161 FDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-----V---QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEG 232 (405)
T ss_pred ccCCCCEEEEecCcceEEEEecchheeeeeeeech-----h---eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccC
Confidence 88999999999999999999999966555444431 1 47889999999999999 69999999998621
Q ss_pred ---ce--eeeecCCCCCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEec
Q 003871 669 ---NH--TSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 742 (790)
Q Consensus 669 ---~~--~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 742 (790)
++ .+.+..--....-.+++||.+|.|+++|+. ...+|||....|.+++.+. |..+... +++.|+|
T Consensus 233 r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-------G~kgE~l--~DV~whp 303 (405)
T KOG1273|consen 233 RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-------GTKGEEL--LDVNWHP 303 (405)
T ss_pred ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec-------CCchhhe--eeccccc
Confidence 11 111110001334567899999999998875 3679999999999999986 4433343 4899999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCccccccCCC
Q 003871 743 LEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 774 (790)
Q Consensus 743 ~d~~~las~s~Dg~i~iW~~~~~~~~w~~~~~ 774 (790)
-...+++- ..|.++||.....+ .|....|
T Consensus 304 -~rp~i~si-~sg~v~iw~~~~~e-nwsafAP 332 (405)
T KOG1273|consen 304 -VRPIIASI-ASGVVYIWAVVQVE-NWSAFAP 332 (405)
T ss_pred -ceeeeeec-cCCceEEEEeeccc-chhhcCc
Confidence 67778877 77999999987654 6766543
No 127
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=1.7e-22 Score=203.34 Aligned_cols=256 Identities=16% Similarity=0.222 Sum_probs=197.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCce-----eeeeccCCCCCCceEE
Q 003871 372 GRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-----RTLLLPDNSFGGRVVR 446 (790)
Q Consensus 372 ~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~-----~~~~l~~~~h~~~V~~ 446 (790)
.|.+.| +.+.+. |....+ +|+++..+.|.|||....+..... ..+.+ .||+..=.+
T Consensus 122 ~h~gEV-------nRaRym-------PQnp~i---VAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L--~gH~~eg~g 182 (422)
T KOG0264|consen 122 NHDGEV-------NRARYM-------PQNPNI---VATKTSSGDVYVFDYTKHPSKPKASGECRPDLRL--KGHEKEGYG 182 (422)
T ss_pred cCCccc-------hhhhhC-------CCCCcE---EEecCCCCCEEEEEeccCCCcccccccCCCceEE--Eeecccccc
Confidence 488888 888887 666555 488999999999998643211111 11122 368887888
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEe
Q 003871 447 LIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSA 522 (790)
Q Consensus 447 l~~spdg~-~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~ 522 (790)
++|++... +|++++.|++|++||++.... .++.........+|...|..++|+ ..+++++
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~----------------~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv 246 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESK----------------EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV 246 (422)
T ss_pred cccccccceeEeeccCCCcEEEEecccccc----------------CCccccceEEeecCCcceehhhccccchhhheee
Confidence 99998543 688999999999999986433 111122222234799999999999 6677777
Q ss_pred c-CCeEEEEECC--CCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEEEcCCCCCEEEEEEeC
Q 003871 523 S-GGKISIFSLE--TFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSL 596 (790)
Q Consensus 523 s-dg~I~vwd~~--~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~v~~l~~sp 596 (790)
+ |+.+.|||++ +.++.....+|.+.|.|++|+|-+ .||+||.|++|.+||+++- +++..+.+|...|..|.|+|
T Consensus 247 ~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 247 GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP 326 (422)
T ss_pred cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC
Confidence 7 8999999999 556667778999999999999988 9999999999999999875 56889999999999999999
Q ss_pred C-CCEEEEEeCCCcEEEEECCCCceee---------ceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEE
Q 003871 597 S-LNVLVSSGADAQLCVWDAVGWKKLC---------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYE 664 (790)
Q Consensus 597 d-g~~l~s~s~dg~I~vwd~~~~~~~~---------~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd 664 (790)
+ ...||+++.|+.+.|||+..-.... ...+. +-.||. ..|..+.|+|+..+++++ .|+.+.||.
T Consensus 327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF-~HgGH~---~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF-IHGGHT---AKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeE-EecCcc---cccccccCCCCCCeEEEEecCCceEEEee
Confidence 5 5679999999999999997521110 11122 334565 899999999999888874 899999999
Q ss_pred CC
Q 003871 665 AP 666 (790)
Q Consensus 665 ~~ 666 (790)
..
T Consensus 403 ~s 404 (422)
T KOG0264|consen 403 MA 404 (422)
T ss_pred cc
Confidence 75
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.4e-22 Score=202.44 Aligned_cols=285 Identities=16% Similarity=0.166 Sum_probs=210.0
Q ss_pred eeccCC-CceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC-CCcEEEEecCCCCccccccccccc
Q 003871 408 VCAKSL-EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNME 485 (790)
Q Consensus 408 at~s~d-~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~-dg~i~vw~~~~~~~~~g~~~~~~~ 485 (790)
.+++.| .++.+||+.+ ...+.+++ + +....-.++.. -.+.|++++.. -..+.+|.+.....
T Consensus 11 sssS~d~~~~~~~dl~T---Gt~~~~yk--g-~~~a~~~sl~~-l~~~yllsaq~~rp~l~vw~i~k~~~---------- 73 (476)
T KOG0646|consen 11 SSSSFDPINCIVWDLRT---GTSLLQYK--G-SYLAQAASLTA-LNNEYLLSAQLKRPLLHVWEILKKDQ---------- 73 (476)
T ss_pred eccCCCCcceeEEecCC---CceeEEec--C-cccccchhhhh-hchhheeeecccCccccccccCchhh----------
Confidence 334444 4599999984 23333333 1 00011111111 12356777665 45788888765332
Q ss_pred cccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEE
Q 003871 486 SQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAF 561 (790)
Q Consensus 486 ~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~s 561 (790)
..+.. --.++|.+++-+ |.+++.|. .|.|++|.+.+|..+..+.+|-..|+|+.|+.|| +|++
T Consensus 74 ----------~~q~~---v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiT 140 (476)
T KOG0646|consen 74 ----------VVQYI---VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIIT 140 (476)
T ss_pred ----------hhhhc---ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEe
Confidence 11111 246789999988 88888886 8999999999999999999999999999999999 9999
Q ss_pred EeCCCcEEEEeCC---------CCceEEEEcCCCCCEEEEEEeCC--CCEEEEEeCCCcEEEEECCCCceeeceeeeeec
Q 003871 562 GFDDSSILVHCPC---------TKKTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630 (790)
Q Consensus 562 gs~dg~I~iwd~~---------~~~~~~~l~~h~~~v~~l~~spd--g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~ 630 (790)
|+.||.|.+|++. +-++...|..|+-+|+++...+. ..+++++|.|.++++||+..|.........
T Consensus 141 gskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp--- 217 (476)
T KOG0646|consen 141 GSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP--- 217 (476)
T ss_pred cCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC---
Confidence 9999999999863 23567889999999999998774 357999999999999999997654433322
Q ss_pred cCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCc----------------eeeeecCCCCCCCeEEEEEecCCC
Q 003871 631 TGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN----------------HTSQLVPDKMDLPITYATYSCDGK 693 (790)
Q Consensus 631 ~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~----------------~~~~~~~~~h~~~v~~l~~s~dg~ 693 (790)
..+.+++.+|-.+.+++| .+|.|.+.++.... .+..+.++.....|+|++++-||.
T Consensus 218 -------~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 218 -------SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT 290 (476)
T ss_pred -------CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc
Confidence 579999999999999996 89999988875322 334454432235999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEec
Q 003871 694 CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 742 (790)
Q Consensus 694 ~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 742 (790)
.|++|+.||.|+|||+.+.++++++. |..++|+ -+.+.|
T Consensus 291 lLlSGd~dg~VcvWdi~S~Q~iRtl~--------~~kgpVt--nL~i~~ 329 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDIYSKQCIRTLQ--------TSKGPVT--NLQINP 329 (476)
T ss_pred EEEeeCCCCCEEEEecchHHHHHHHh--------hhccccc--eeEeec
Confidence 99999999999999999988877764 1244566 555544
No 129
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.7e-22 Score=199.68 Aligned_cols=283 Identities=13% Similarity=0.131 Sum_probs=219.7
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCC-EEEEEeCCC
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTA 463 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~-~l~s~~~dg 463 (790)
+++.|+ |....+ .+|+.|++++||.++... ...++.+.+ -..+|.+.+|.|+|. .+++++...
T Consensus 217 ~sv~FH-------p~~pll----lvaG~d~~lrifqvDGk~-N~~lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrk 280 (514)
T KOG2055|consen 217 TSVQFH-------PTAPLL----LVAGLDGTLRIFQVDGKV-NPKLQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRK 280 (514)
T ss_pred eEEEec-------CCCceE----EEecCCCcEEEEEecCcc-Chhheeeee----ccCccceeeecCCCceEEEecccce
Confidence 999999 888888 999999999999998532 223344433 468999999999999 888888899
Q ss_pred cEEEEecCCCCccccccccccccccccCCCceeeeecccCCC-CCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEE
Q 003871 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA 539 (790)
Q Consensus 464 ~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~ 539 (790)
.+..||+.+.+. .+.....++ ...+..+..+ +++|+..+ .|.|.+....+++.+.
T Consensus 281 y~ysyDle~ak~---------------------~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~ 339 (514)
T KOG2055|consen 281 YLYSYDLETAKV---------------------TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT 339 (514)
T ss_pred EEEEeecccccc---------------------ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh
Confidence 999999987543 111011122 2345556666 88888888 8999999999999998
Q ss_pred EEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCE--EEEEEeCCCCEEEEEeCCCcEEEEECC
Q 003871 540 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI--TCLAYSLSLNVLVSSGADAQLCVWDAV 616 (790)
Q Consensus 540 ~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v--~~l~~spdg~~l~s~s~dg~I~vwd~~ 616 (790)
+++ -.+.|..++|+.+| .|++.+.+|.|++||+++..+++.+.. .+.| ++++.+++|.++|+|+..|.|-|||.+
T Consensus 340 s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 340 SFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred eee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 886 46678999999999 888888899999999999999888864 2333 466778899999999999999999976
Q ss_pred CCc-eeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE---eCCcEEEEECCCCceeeeecCCC-CCCCeEEEEEecC
Q 003871 617 GWK-KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCD 691 (790)
Q Consensus 617 ~~~-~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~---~dg~I~iwd~~~~~~~~~~~~~~-h~~~v~~l~~s~d 691 (790)
+-. ....+++.++..-. ..|+++.|+||+..||.+ .+..+++..+.+......+.... .-+.|+|++|||.
T Consensus 418 s~~~s~~PkPik~~dNLt----t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~ 493 (514)
T KOG2055|consen 418 SCFASTNPKPIKTVDNLT----TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN 493 (514)
T ss_pred hhhccCCCCchhhhhhhh----eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC
Confidence 521 11123444332222 479999999999999973 57789999998877777665432 1467999999999
Q ss_pred CCEEEEEEcCCeEEEEECC
Q 003871 692 GKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 692 g~~l~sgs~dg~i~vwd~~ 710 (790)
|.+||.|..+|.|.+|.+.
T Consensus 494 sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 494 SGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CceEEeecCCCceeeEeec
Confidence 9999999999999999864
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.2e-21 Score=196.88 Aligned_cols=283 Identities=14% Similarity=0.206 Sum_probs=218.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--Cc-
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS- 517 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~- 517 (790)
.++|+++.|+|....+++++.|+++++|.++.... ..++... -...+|.+.+|. |.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-------------------~~lqS~~--l~~fPi~~a~f~p~G~~ 271 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-------------------PKLQSIH--LEKFPIQKAEFAPNGHS 271 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC-------------------hhheeee--eccCccceeeecCCCce
Confidence 57899999999999999999999999998875322 1112111 146789999999 66
Q ss_pred EEEEec-CCeEEEEECCCCcEEEE--EcCCC-CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEE
Q 003871 518 HLFSAS-GGKISIFSLETFQTLAT--FANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 592 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~~~~~~~~--~~~~~-~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l 592 (790)
.+++++ ......||+.+.+..+. ..++. ..+..+.++|++ +|+..+..|.|.+....+++.+..++ -.+.|.++
T Consensus 272 ~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 272 VIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred EEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 677777 78999999998765432 22332 356788999999 99999999999999999999988887 46789999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCC----
Q 003871 593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT---- 667 (790)
Q Consensus 593 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~---- 667 (790)
.|+.|++.|++++.+|.|.+||++... .+..+..... -.-++++.++++.+||+| ..|.|.|||..+
T Consensus 351 ~fsSdsk~l~~~~~~GeV~v~nl~~~~-----~~~rf~D~G~---v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 351 TFSSDSKELLASGGTGEVYVWNLRQNS-----CLHRFVDDGS---VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred EEecCCcEEEEEcCCceEEEEecCCcc-----eEEEEeecCc---cceeeeeecCCCceEEeccCcceEEEeccchhhcc
Confidence 999999999999999999999999843 3332322211 234678888999999997 678899999653
Q ss_pred --CceeeeecCCCCCCCeEEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecC
Q 003871 668 --LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK--SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 743 (790)
Q Consensus 668 --~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~--dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~ 743 (790)
.+++..+.. -...|++++|++|++.||.+|. +..+++-.+.+...-..+... ..+-| . +.|++|+|
T Consensus 423 ~~PkPik~~dN--Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-n~~vg----~--vtc~aFSP- 492 (514)
T KOG2055|consen 423 TNPKPIKTVDN--LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-NTKVG----H--VTCMAFSP- 492 (514)
T ss_pred CCCCchhhhhh--hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC-CCccc----c--eEEEEecC-
Confidence 344444432 3678999999999999987765 688999999887655555332 22223 2 45999999
Q ss_pred CCCEEEEEeCCCcEEEEecC
Q 003871 744 EPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 744 d~~~las~s~Dg~i~iW~~~ 763 (790)
.+.+||.|..+|.+.+|.+.
T Consensus 493 ~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 493 NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCceEEeecCCCceeeEeec
Confidence 89999999999999999874
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.7e-20 Score=197.80 Aligned_cols=270 Identities=17% Similarity=0.145 Sum_probs=197.0
Q ss_pred CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEE-EEec-CCeEEE
Q 003871 454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISI 529 (790)
Q Consensus 454 ~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l-~s~s-dg~I~v 529 (790)
+.+++++.|+.+.+||..++.. ..... ....+.+++|+ ++.+ ++++ ++.|++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~---------------------~~~~~---~~~~~~~l~~~~dg~~l~~~~~~~~~v~~ 57 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEV---------------------TRTFP---VGQRPRGITLSKDGKLLYVCASDSDTIQV 57 (300)
T ss_pred cEEEEecCCCEEEEEECCCCce---------------------EEEEE---CCCCCCceEECCCCCEEEEEECCCCeEEE
Confidence 4678888999999999865432 11111 22335678898 6665 4555 799999
Q ss_pred EECCCCcEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Q 003871 530 FSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD 607 (790)
Q Consensus 530 wd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~-sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d 607 (790)
||..+++....+..+.. +..++|+|++ .++ +++.++.|++||+.+++.+..+.. ...+.+++|+|+|+++++++.+
T Consensus 58 ~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~ 135 (300)
T TIGR03866 58 IDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSET 135 (300)
T ss_pred EECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecC
Confidence 99999988877765433 5678999999 554 456789999999998887777753 2346889999999999998876
Q ss_pred C-cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E-eCCcEEEEECCCCceeeeecCCC---C--
Q 003871 608 A-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK---M-- 679 (790)
Q Consensus 608 g-~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~I~iwd~~~~~~~~~~~~~~---h-- 679 (790)
+ .+.+||..+++... ....+ ..+.+++|+|+++++++ + .++.|++||+.+++.+..+.... +
T Consensus 136 ~~~~~~~d~~~~~~~~-----~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~ 205 (300)
T TIGR03866 136 TNMAHFIDTKTYEIVD-----NVLVD-----QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPE 205 (300)
T ss_pred CCeEEEEeCCCCeEEE-----EEEcC-----CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccc
Confidence 5 46778988754322 12222 24578999999998866 4 58999999999988776654211 1
Q ss_pred CCCeEEEEEecCCCEEEE-EEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEE-eCCCcE
Q 003871 680 DLPITYATYSCDGKCIYV-SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG-LTNGRV 757 (790)
Q Consensus 680 ~~~v~~l~~s~dg~~l~s-gs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~-s~Dg~i 757 (790)
......++|+|+++++++ .+.++.+.+||+.+++.+..+.. ...+. +++|+| +|.+|+++ +.+|.|
T Consensus 206 ~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---------~~~~~--~~~~~~-~g~~l~~~~~~~~~i 273 (300)
T TIGR03866 206 AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---------GQRVW--QLAFTP-DEKYLLTTNGVSNDV 273 (300)
T ss_pred cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---------CCCcc--eEEECC-CCCEEEEEcCCCCeE
Confidence 123457889999998654 45567899999999887765431 22455 899999 89988876 568999
Q ss_pred EEEecCCCcccccc
Q 003871 758 HVIEPLESEVEWGK 771 (790)
Q Consensus 758 ~iW~~~~~~~~w~~ 771 (790)
++||+.+++.....
T Consensus 274 ~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 274 SVIDVAALKVIKSI 287 (300)
T ss_pred EEEECCCCcEEEEE
Confidence 99999999876444
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.2e-21 Score=185.74 Aligned_cols=291 Identities=13% Similarity=0.116 Sum_probs=213.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCC---Cc-----eeeeeccCCCCCCc
Q 003871 372 GRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEP---SE-----CRTLLLPDNSFGGR 443 (790)
Q Consensus 372 ~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~---~~-----~~~~~l~~~~h~~~ 443 (790)
-|.+.| +++... + -.|+++ ++|+.||.|.+||++...+. +. |..-.-...+|.-.
T Consensus 41 ~HgGsv-------NsL~id-~-----tegrym----lSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~ 103 (397)
T KOG4283|consen 41 PHGGSV-------NSLQID-L-----TEGRYM----LSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYA 103 (397)
T ss_pred cCCCcc-------ceeeec-c-----ccceEE----eecCCCccEEEEEeccccchhhccceeheeeeccccCCccceee
Confidence 477888 888775 2 348999 99999999999999753211 11 11001112478889
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-----Cc
Q 003871 444 VVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GS 517 (790)
Q Consensus 444 V~~l~~sp-dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-----~~ 517 (790)
|.++.|-| |.-.+.+++.|.+++|||.++.+. ...+ ...+.|++-+++ --
T Consensus 104 iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~--------------------a~~F----~me~~VYshamSp~a~sHc 159 (397)
T KOG4283|consen 104 ISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQE--------------------AVDF----KMEGKVYSHAMSPMAMSHC 159 (397)
T ss_pred eeeeEEeeecCceeecccccceEEEeeccccee--------------------eEEe----ecCceeehhhcChhhhcce
Confidence 99999999 444566777799999999887433 1111 245666666666 23
Q ss_pred EEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEE------------
Q 003871 518 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAK------------ 581 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~-~~~~~------------ 581 (790)
++|+|. +-.|++-|+.+|.+-.++.+|.+.|.++.|+|.. .|++|+.||.|++||++.- -+...
T Consensus 160 LiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~ 239 (397)
T KOG4283|consen 160 LIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPIL 239 (397)
T ss_pred EEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccc
Confidence 566666 7899999999999999999999999999999998 8999999999999999743 12221
Q ss_pred --EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCC
Q 003871 582 --LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG 658 (790)
Q Consensus 582 --l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg 658 (790)
-..|.+.|++++|+.|+.++++++.|..+++|+...|+....... +..|....+.-..+. +-+...++. -.++
T Consensus 240 ~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g---~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~ 315 (397)
T KOG4283|consen 240 KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFG---PIIHNQTTSFAVHIQ-SMDSDVFVLFPNDG 315 (397)
T ss_pred cccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccc---cccccccccceEEEe-ecccceEEEEecCC
Confidence 234778999999999999999999999999999998763221111 111110001111122 333333333 4679
Q ss_pred cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 003871 659 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 659 ~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~ 709 (790)
.+.++++-.+..++.+.. |...+.+.++-|+-+...+|..|+.|+.|-.
T Consensus 316 ~lall~~~sgs~ir~l~~--h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 316 SLALLNLLEGSFVRRLST--HLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eEEEEEccCceEEEeeec--ccceeeEEeecCchhhhhccccCCccccccc
Confidence 999999999999998875 5889999999999999999999999999976
No 133
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=2.7e-22 Score=207.55 Aligned_cols=200 Identities=19% Similarity=0.182 Sum_probs=152.9
Q ss_pred CCeEEEEec---CcEEEEec-CCeEEEEECCCC-------cEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeC
Q 003871 507 DSISCFALR---GSHLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCP 573 (790)
Q Consensus 507 ~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~-------~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~ 573 (790)
..|+.+.|. .+.|++++ ||.|++|.+..+ .....+..|...|+++.|+|-. .|++++.|.+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 557888888 67788888 899999998764 3445678899999999999987 9999999999999999
Q ss_pred CCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEE
Q 003871 574 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 653 (790)
Q Consensus 574 ~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~ 653 (790)
.+++....+.+|++.|.+++|||||+.+|+.+.||+|++|+.++++ .+++ ++..+-...-..|.|.-||++++
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e----~pv~---Eg~gpvgtRgARi~wacdgr~vi 780 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE----QPVY---EGKGPVGTRGARILWACDGRIVI 780 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC----Cccc---cCCCCccCcceeEEEEecCcEEE
Confidence 9999999999999999999999999999999999999999998854 3333 22221113445688888999998
Q ss_pred E-E----eCCcEEEEECCCCc--eeeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCCeE
Q 003871 654 S-I----HEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLEL 714 (790)
Q Consensus 654 ~-~----~dg~I~iwd~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~dg~i~vwd~~~~~~ 714 (790)
+ | +..+|.+||.++.. .+.+...+. ...+.--.+.+|.+ ++++|-.|..|++|++-..+.
T Consensus 781 v~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv-aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 781 VVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV-APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred EecccccchhhhhhhhhhhccCCcceeeeecc-cCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 7 5 34569999987533 333322110 12222334556665 456888899999999876554
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.8e-21 Score=186.68 Aligned_cols=267 Identities=14% Similarity=0.142 Sum_probs=203.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
+++.|+ |.+..| +.++.||++++||+.. ......+ .|..++.+++|.++. .+++|+.||.
T Consensus 17 S~v~f~-------~~~~~L----LvssWDgslrlYdv~~---~~l~~~~-----~~~~plL~c~F~d~~-~~~~G~~dg~ 76 (323)
T KOG1036|consen 17 SSVKFS-------PSSSDL----LVSSWDGSLRLYDVPA---NSLKLKF-----KHGAPLLDCAFADES-TIVTGGLDGQ 76 (323)
T ss_pred eeEEEc-------CcCCcE----EEEeccCcEEEEeccc---hhhhhhe-----ecCCceeeeeccCCc-eEEEeccCce
Confidence 899998 888888 8888999999999974 2222232 389999999999865 4899999999
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEE
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 541 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~ 541 (790)
|+.+|+.++.. .....|..+|.|+.++ .+.+++|+ |++|++||.+.......+
T Consensus 77 vr~~Dln~~~~------------------------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~ 132 (323)
T KOG1036|consen 77 VRRYDLNTGNE------------------------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF 132 (323)
T ss_pred EEEEEecCCcc------------------------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc
Confidence 99999987543 1123699999999999 78889999 999999999875555555
Q ss_pred cCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEE--cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 003871 542 ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL--KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619 (790)
Q Consensus 542 ~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l--~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 619 (790)
.. ...|.++..+.+ .|++|+.|..|.+||+++....... ..-.-.+.++++-|++.-.++++-||.|.+=.++..+
T Consensus 133 d~-~kkVy~~~v~g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~ 210 (323)
T KOG1036|consen 133 DQ-GKKVYCMDVSGN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSE 210 (323)
T ss_pred cc-CceEEEEeccCC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCch
Confidence 43 337887776432 8999999999999999876543322 1234568999999988889999999999887666532
Q ss_pred eeeceeeeeecc-----CCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCC
Q 003871 620 KLCSKFLHSFQT-----GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK 693 (790)
Q Consensus 620 ~~~~~~l~~~~~-----~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 693 (790)
....+... +.. .......+|++|+|+|-...|++| .||.|.+||+.+.+.+..+.. ....|.+++|+.||.
T Consensus 211 ~~~skkya-FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~--~~~SI~slsfs~dG~ 287 (323)
T KOG1036|consen 211 EAQSKKYA-FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK--YETSISSLSFSMDGS 287 (323)
T ss_pred HHhhhcee-EEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC--CCCceEEEEeccCCC
Confidence 11111111 111 111111589999999999999995 999999999999888888843 357799999999999
Q ss_pred EEEEEEc
Q 003871 694 CIYVSCK 700 (790)
Q Consensus 694 ~l~sgs~ 700 (790)
.||.++.
T Consensus 288 ~LAia~s 294 (323)
T KOG1036|consen 288 LLAIASS 294 (323)
T ss_pred eEEEEec
Confidence 9999874
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.8e-21 Score=208.43 Aligned_cols=274 Identities=14% Similarity=0.153 Sum_probs=213.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcC
Q 003871 372 GRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 451 (790)
Q Consensus 372 ~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~sp 451 (790)
+|+..- +.++|. |+|+++ .+++.||.|++|+..... .....+. -+...|.+++..
T Consensus 11 aht~G~-------t~i~~d-------~~gefi----~tcgsdg~ir~~~~~sd~--e~P~ti~----~~g~~v~~ia~~- 65 (933)
T KOG1274|consen 11 AHTGGL-------TLICYD-------PDGEFI----CTCGSDGDIRKWKTNSDE--EEPETID----ISGELVSSIACY- 65 (933)
T ss_pred hccCce-------EEEEEc-------CCCCEE----EEecCCCceEEeecCCcc--cCCchhh----ccCceeEEEeec-
Confidence 577766 899998 999999 999999999999986421 1112211 156677777654
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEE
Q 003871 452 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKIS 528 (790)
Q Consensus 452 dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~ 528 (790)
++++++++.+++|.+|.+.++.. .+.+. ..+-++.+++|+ |+++|.|+ |-.|+
T Consensus 66 -s~~f~~~s~~~tv~~y~fps~~~-----------------~~iL~------Rftlp~r~~~v~g~g~~iaagsdD~~vK 121 (933)
T KOG1274|consen 66 -SNHFLTGSEQNTVLRYKFPSGEE-----------------DTILA------RFTLPIRDLAVSGSGKMIAAGSDDTAVK 121 (933)
T ss_pred -ccceEEeeccceEEEeeCCCCCc-----------------cceee------eeeccceEEEEecCCcEEEeecCceeEE
Confidence 45899999999999999887543 11122 356788999999 88999999 78999
Q ss_pred EEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCC--------CCCEEEEEEeCCCC
Q 003871 529 IFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH--------QNRITCLAYSLSLN 599 (790)
Q Consensus 529 vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h--------~~~v~~l~~spdg~ 599 (790)
+.+..+......+.+|.++|.++.++|.+ +||+.+-||.|++||+.++.+...+.+- ...+..++|+|+|.
T Consensus 122 ~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g 201 (933)
T KOG1274|consen 122 LLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG 201 (933)
T ss_pred EEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC
Confidence 99999999999999999999999999999 9999999999999999999877666431 34567899999988
Q ss_pred EEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCC
Q 003871 600 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK 678 (790)
Q Consensus 600 ~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~ 678 (790)
.++..+.|+.|++|+..+++... . +...+.. ..+..+.|+|+|+|||++ .+|.|.|||..+-.. +.
T Consensus 202 ~la~~~~d~~Vkvy~r~~we~~f--~---Lr~~~~s--s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~ 268 (933)
T KOG1274|consen 202 TLAVPPVDNTVKVYSRKGWELQF--K---LRDKLSS--SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HE 268 (933)
T ss_pred eEEeeccCCeEEEEccCCceehe--e---ecccccc--cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------cc
Confidence 88888899999999999976432 2 2222221 358999999999999996 899999999987222 12
Q ss_pred CCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 003871 679 MDLPITYATYSCDGKCIYVSCKSGHVKVF 707 (790)
Q Consensus 679 h~~~v~~l~~s~dg~~l~sgs~dg~i~vw 707 (790)
....|.+++|.|+++-+-.-...|...+|
T Consensus 269 ~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 269 FKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred ccceeEEEecCCCCCeeEEEeeccccccC
Confidence 26789999999998866554444544444
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.5e-21 Score=203.24 Aligned_cols=292 Identities=16% Similarity=0.117 Sum_probs=204.6
Q ss_pred EEEcC---CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEE
Q 003871 447 LIYSH---SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 521 (790)
Q Consensus 447 l~~sp---dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s 521 (790)
..|++ ....|+.+..||.|.++|...... .++...+. ....|...|..+.|. ...|++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f--------------r~ee~~lk---~~~aH~nAifDl~wapge~~lVs 117 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVF--------------RLEERQLK---KPLAHKNAIFDLKWAPGESLLVS 117 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhc--------------chhhhhhc---ccccccceeEeeccCCCceeEEE
Confidence 45554 234577777799999999775322 21111111 122699999999999 456788
Q ss_pred ec-CCeEEEEECCCCcEEEE--EcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc-------------------
Q 003871 522 AS-GGKISIFSLETFQTLAT--FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK------------------- 577 (790)
Q Consensus 522 ~s-dg~I~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~------------------- 577 (790)
++ |.++++||++++++... +.+|...|.+++|.|++ .+++|+.||.|.|||++-..
T Consensus 118 asGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 118 ASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred ccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 87 89999999999988877 88999999999999999 99999999999999986221
Q ss_pred -e-------EEEEcCCCCCEEE---EEEeCCCCEEEEEeC-CCcEEEEECCCCceee-ceeee--eeccCCCCCCCCeEE
Q 003871 578 -T-------KAKLKGHQNRITC---LAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLC-SKFLH--SFQTGLVPETTIVNH 642 (790)
Q Consensus 578 -~-------~~~l~~h~~~v~~---l~~spdg~~l~s~s~-dg~I~vwd~~~~~~~~-~~~l~--~~~~~~~~~~~~v~~ 642 (790)
+ +...+.+...|.+ +.+..|...||+++. |+.|+|||++...... ..+.. .++.. ....-.+.+
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~-skrs~G~~n 276 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTH-SKRSVGQVN 276 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCc-ccceeeeEE
Confidence 0 1112234445555 556678889999888 9999999998743211 11111 11111 111145777
Q ss_pred EEEeCCCCEEEE-EeCCcEEEEECCCCc--eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003871 643 IQFHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 643 i~~sp~~~~l~~-~~dg~I~iwd~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~ 719 (790)
+.....|.+|++ +.|+.|+.||+.+.. ++..+.+.........-..+||+.++++|+.|...++|.+.+.+.--.+.
T Consensus 277 L~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l 356 (720)
T KOG0321|consen 277 LILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL 356 (720)
T ss_pred EEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh
Confidence 888888888887 699999999997543 33333322112223344578999999999999999999999876433221
Q ss_pred cccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 720 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 720 ~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
.|| ...|+ +++|.|..-.-++++++|.+++||++..+
T Consensus 357 ------~Gh-t~eVt--~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 357 ------LGH-TREVT--TVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ------hCc-ceEEE--EEeeccccCCCceeeccCcceEEEeccCc
Confidence 266 33444 99999865566888899999999999765
No 137
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.9e-22 Score=211.19 Aligned_cols=279 Identities=14% Similarity=0.192 Sum_probs=208.8
Q ss_pred CCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccC-CCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCc
Q 003871 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ 475 (790)
Q Consensus 398 ~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~-~~h~~~V~~l~~sp-dg~~l~s~~~dg~i~vw~~~~~~~ 475 (790)
+|-..+ +.++. ..+++|.+........+.. .... +.-.-.+..++|+. +.++||+++.+|.|.+||+.....
T Consensus 49 r~~~qi----v~AGr-s~lklyai~~~~~~~~~~~-~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r 122 (839)
T KOG0269|consen 49 RDINQI----VVAGR-SLLKLYAINPNDFSEKCNH-RFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR 122 (839)
T ss_pred CCccee----EEecc-cceeeEeeCcccCCcceee-ecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc
Confidence 666666 66666 5677777753211122211 1000 00112344567764 567899999999999999875211
Q ss_pred cccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEE
Q 003871 476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 551 (790)
Q Consensus 476 ~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l 551 (790)
.. .++ ....|...++++.|+ .++|++|+ ||.|++||++..+...++.+....|+.+
T Consensus 123 -----------------nk-~l~--~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV 182 (839)
T KOG0269|consen 123 -----------------NK-LLT--VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV 182 (839)
T ss_pred -----------------ch-hhh--HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhce
Confidence 00 111 112699999999999 78999999 9999999999988888888888999999
Q ss_pred EEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeee
Q 003871 552 ILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628 (790)
Q Consensus 552 ~~s~~g--~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~ 628 (790)
+|+|.. .++++.+.|.+.+||++.. ++...+..|.++|.++.|+|++.+||+||.|+.|+|||+.+++......+.
T Consensus 183 ~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn- 261 (839)
T KOG0269|consen 183 KFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN- 261 (839)
T ss_pred eeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-
Confidence 999987 9999999999999999865 456778899999999999999999999999999999999976543333333
Q ss_pred eccCCCCCCCCeEEEEEeCCCCE-EEEE---eCCcEEEEECCCCce-eeeecCCCCCCCeEEEEEec-CCCEEEEEEcCC
Q 003871 629 FQTGLVPETTIVNHIQFHPDQIH-LLSI---HEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATYSC-DGKCIYVSCKSG 702 (790)
Q Consensus 629 ~~~~~~~~~~~v~~i~~sp~~~~-l~~~---~dg~I~iwd~~~~~~-~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~dg 702 (790)
.. .++.+++|-|...+ ||++ .|-.|+|||++..-. ..++. .|...++.++|.. |...+.+++.||
T Consensus 262 --Ti-----apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~--eH~~~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 262 --TI-----APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL--EHTDSVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred --ec-----ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee--ccCccccceeccCCCceeeEeecCcc
Confidence 32 68999999998755 4443 688899999975433 34443 4789999999975 556788999999
Q ss_pred eEEEEECCCC
Q 003871 703 HVKVFDTSTL 712 (790)
Q Consensus 703 ~i~vwd~~~~ 712 (790)
+|..-.++++
T Consensus 333 tv~qh~~kna 342 (839)
T KOG0269|consen 333 TVLQHLFKNA 342 (839)
T ss_pred HHHHhhhhcc
Confidence 9877666554
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=8.2e-22 Score=209.54 Aligned_cols=288 Identities=13% Similarity=0.103 Sum_probs=215.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---Cc
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS 517 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~ 517 (790)
.....++...++-..++.++. ..+.+|.+..... ... -.+.......-...+..|.|. .+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~--------------~~~--~~~~~k~kqn~~~S~~DVkW~~~~~N 101 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDF--------------SEK--CNHRFKTKQNKFYSAADVKWGQLYSN 101 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccC--------------Ccc--eeeecccccceeeehhhcccccchhh
Confidence 355667778888888887776 4577777664332 000 001000000112234567777 78
Q ss_pred EEEEec-CCeEEEEECCC---CcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEE
Q 003871 518 HLFSAS-GGKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 591 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~~---~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~ 591 (790)
+||+++ .|.|.+||+.. .+.+..|..|...++++.|++.. +|++|+.||+|++||++..+....+.+....|.+
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRD 181 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRD 181 (839)
T ss_pred hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhc
Confidence 999999 89999999986 55666788999999999999988 9999999999999999999888889888899999
Q ss_pred EEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCc
Q 003871 592 LAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 669 (790)
Q Consensus 592 l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~ 669 (790)
|+|+| .+..++++.+.|.+.+||++..+ +... ....|. ++|.++.|+|++.+||+| .|+.|+|||..+++
T Consensus 182 V~fsp~~~~~F~s~~dsG~lqlWDlRqp~----r~~~-k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIHDSGYLQLWDLRQPD----RCEK-KLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred eeeccCCCceEEEecCCceEEEeeccCch----hHHH-Hhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 99999 67899999999999999999743 2222 344666 899999999999999995 99999999998655
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCE-EEEEE--cCCeEEEEECCCCeE-EEEeccccccCCCCcccccceEEEEEecCCC
Q 003871 670 HTSQLVPDKMDLPITYATYSCDGKC-IYVSC--KSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEP 745 (790)
Q Consensus 670 ~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs--~dg~i~vwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 745 (790)
.-...... ...+|.++.|-|+..+ |++++ .|-.|+|||+...-. ..++. -| ...+. .++|...|.
T Consensus 254 ~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~-------eH-~~~vt--~i~W~~~d~ 322 (839)
T KOG0269|consen 254 AKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL-------EH-TDSVT--GIAWDSGDR 322 (839)
T ss_pred ccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee-------cc-Ccccc--ceeccCCCc
Confidence 43222221 2789999999998765 44444 478999999986432 23333 23 44556 888987677
Q ss_pred CEEEEEeCCCcEEEEecCC
Q 003871 746 NRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 746 ~~las~s~Dg~i~iW~~~~ 764 (790)
..|.+++.||+|..-.+.+
T Consensus 323 ~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 323 INLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eeeEeecCccHHHHhhhhc
Confidence 8899999999887655443
No 139
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=3.8e-21 Score=185.40 Aligned_cols=293 Identities=14% Similarity=0.122 Sum_probs=212.1
Q ss_pred CCCCceEEEEEcC----CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEe
Q 003871 439 SFGGRVVRLIYSH----SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 514 (790)
Q Consensus 439 ~h~~~V~~l~~sp----dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~ 514 (790)
.|..+|..++|++ +...+++....+.+.+|+...... -..++....+.+....+.++|
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~------------------ir~lq~y~D~d~~Esfytcsw 97 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGG------------------IRLLQSYADEDHDESFYTCSW 97 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccc------------------eeeeeeccCCCCCcceEEEEE
Confidence 6889999999985 333344444456788888664221 013333333457888888898
Q ss_pred c------CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEE---
Q 003871 515 R------GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL--- 582 (790)
Q Consensus 515 s------~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l--- 582 (790)
+ +.++|+|+ -|.|++.|+.++++...+.+|...|+.+.++|+. ++++||.|.+|++|++++..++..|
T Consensus 98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred EecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc
Confidence 8 34677777 7999999999999999999999999999999999 9999999999999999999998877
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee-------------ceeeee---------eccCCCCCCCCe
Q 003871 583 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC-------------SKFLHS---------FQTGLVPETTIV 640 (790)
Q Consensus 583 ~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~-------------~~~l~~---------~~~~~~~~~~~v 640 (790)
.||.+.|.++.|+++|.+|++++.|.++++|++...+... ..++.+ ...-|. ..|
T Consensus 178 egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr---nyV 254 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR---NYV 254 (385)
T ss_pred ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc---chH
Confidence 5699999999999999999999999999999998522100 000110 011122 455
Q ss_pred EEEEEeCCCCEEEE-EeCCcEEEEECC-CCce-------------eeeecCCCCCCCeEEE--EEecCCCEEEEEEcCCe
Q 003871 641 NHIQFHPDQIHLLS-IHEGQIDVYEAP-TLNH-------------TSQLVPDKMDLPITYA--TYSCDGKCIYVSCKSGH 703 (790)
Q Consensus 641 ~~i~~sp~~~~l~~-~~dg~I~iwd~~-~~~~-------------~~~~~~~~h~~~v~~l--~~s~dg~~l~sgs~dg~ 703 (790)
.|+.|- |.++++ +.++.|..|... -.+. +..+.. ....|+-+ +|.|-+++||.|...|.
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~ 330 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGK 330 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCc
Confidence 566654 567777 788899999872 1111 122211 13344444 55577899999999999
Q ss_pred EEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 704 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 704 i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
|++||++..+....-..+. ...+..|. ..+|+. ||.+|+...+|++|.-||..
T Consensus 331 v~vwdL~~~ep~~~ttl~~----s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 331 VYVWDLDNNEPPKCTTLTH----SKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEECCCCCCccCceEEe----ccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 9999999876642211110 11134566 899999 89999999999999999854
No 140
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.8e-21 Score=198.60 Aligned_cols=314 Identities=12% Similarity=0.125 Sum_probs=225.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
..+.||++.| .++... |.|.+| |+|+.||+|+||.+. ++.|..... ..+.|.++
T Consensus 394 lvyrGHtg~V-------r~iSvd-------p~G~wl----asGsdDGtvriWEi~----TgRcvr~~~----~d~~I~~v 447 (733)
T KOG0650|consen 394 LVYRGHTGLV-------RSISVD-------PSGEWL----ASGSDDGTVRIWEIA----TGRCVRTVQ----FDSEIRSV 447 (733)
T ss_pred eeEeccCCeE-------EEEEec-------CCccee----eecCCCCcEEEEEee----cceEEEEEe----ecceeEEE
Confidence 4568999999 899887 889999 999999999999998 576654331 36789999
Q ss_pred EEcCCCCE-EEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEe---c
Q 003871 448 IYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSA---S 523 (790)
Q Consensus 448 ~~spdg~~-l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~---s 523 (790)
+|+|.+.. +++++....+.|-+..-+.. +.. + +....|+++ +
T Consensus 448 aw~P~~~~~vLAvA~~~~~~ivnp~~G~~--------------------~e~-----~---------~t~ell~~~~~~~ 493 (733)
T KOG0650|consen 448 AWNPLSDLCVLAVAVGECVLIVNPIFGDR--------------------LEV-----G---------PTKELLASAPNES 493 (733)
T ss_pred EecCCCCceeEEEEecCceEEeCccccch--------------------hhh-----c---------chhhhhhcCCCcc
Confidence 99997753 33444444455443221110 000 0 001123333 2
Q ss_pred --CCeEEEEECCCC----cEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC---cEEEEeCCCCceEEEEcCCCCCEEEEE
Q 003871 524 --GGKISIFSLETF----QTLATFANPPPIATYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLA 593 (790)
Q Consensus 524 --dg~I~vwd~~~~----~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg---~I~iwd~~~~~~~~~l~~h~~~v~~l~ 593 (790)
++.+..|.-... .-++..-.|...|..+.|+..| +|++...++ .|.|+++........|+...+.|.++.
T Consensus 494 ~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~ 573 (733)
T KOG0650|consen 494 EPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVK 573 (733)
T ss_pred CCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEE
Confidence 456777865421 1133444688899999999999 888876544 799999987776666766677899999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCC-cee
Q 003871 594 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL-NHT 671 (790)
Q Consensus 594 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~-~~~ 671 (790)
|+|...+|++++ ...|++||+...+ .++++..+. ..|..++++|.|..|++| .|+.+..||+.-+ ++.
T Consensus 574 FHPs~p~lfVaT-q~~vRiYdL~kqe-----lvKkL~tg~----kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPy 643 (733)
T KOG0650|consen 574 FHPSKPYLFVAT-QRSVRIYDLSKQE-----LVKKLLTGS----KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPY 643 (733)
T ss_pred ecCCCceEEEEe-ccceEEEehhHHH-----HHHHHhcCC----eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchh
Confidence 999888888877 4689999998743 233344443 489999999999888885 8999999999754 455
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC------Ce---EEEEeccccccCCCCcc-cccceEEEEEe
Q 003871 672 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST------LE---LRCQINLTAYAQPGTIS-LELYPLVIAAH 741 (790)
Q Consensus 672 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~------~~---~~~~~~~~~~~~~gh~~-~~v~~~~v~~s 741 (790)
+++. .|...+++++|++.-.++++|+.||++.|+.-.- .- .++.+. ||.. +.+-++++.||
T Consensus 644 k~lr--~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~-------gH~~~~~~gVLd~~wH 714 (733)
T KOG0650|consen 644 KTLR--LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR-------GHEKTNDLGVLDTIWH 714 (733)
T ss_pred HHhh--hhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc-------CceeecccceEeeccc
Confidence 6664 3799999999999999999999999999986321 11 123333 5532 22346789999
Q ss_pred cCCCCEEEEEeCCCcEEEEe
Q 003871 742 PLEPNRIALGLTNGRVHVIE 761 (790)
Q Consensus 742 p~d~~~las~s~Dg~i~iW~ 761 (790)
| ...+|.++|.||+|++|.
T Consensus 715 P-~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 715 P-RQPWLFSAGADGTIRLFT 733 (733)
T ss_pred C-CCceEEecCCCceEEeeC
Confidence 9 789999999999999983
No 141
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.1e-20 Score=177.62 Aligned_cols=260 Identities=12% Similarity=0.137 Sum_probs=182.9
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCc
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGS 517 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 517 (790)
.+|.+-|.++.|.+-|+++|+|+.|++++|||..+...
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~------------------------------------------ 47 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG------------------------------------------ 47 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC------------------------------------------
Confidence 36777888888888888888888888888887543111
Q ss_pred EEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCC------C---ceEEEEcCC
Q 003871 518 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCT------K---KTKAKLKGH 585 (790)
Q Consensus 518 ~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g---~l~sgs~dg~I~iwd~~~------~---~~~~~l~~h 585 (790)
+..+....+.|.+.|..+.|.+-. .+|+++.|+++.||.-.. + .....+...
T Consensus 48 ----------------~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds 111 (361)
T KOG2445|consen 48 ----------------TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS 111 (361)
T ss_pred ----------------ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecC
Confidence 234556677899999999997664 899999999999997521 1 123445566
Q ss_pred CCCEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCceeecee----eee---eccCCCCCCCCeEEEEEeCC---CCEEE
Q 003871 586 QNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKF----LHS---FQTGLVPETTIVNHIQFHPD---QIHLL 653 (790)
Q Consensus 586 ~~~v~~l~~sp--dg~~l~s~s~dg~I~vwd~~~~~~~~~~~----l~~---~~~~~~~~~~~v~~i~~sp~---~~~l~ 653 (790)
.+.|+++.|.| -|-.+|+++.||.+|||+...--....-. ++. .+..+. .+..|+.|+|. ..+||
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~---~~~~CvsWn~sr~~~p~iA 188 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK---QPCFCVSWNPSRMHEPLIA 188 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc---CcceEEeeccccccCceEE
Confidence 78899999999 47789999999999999876521111111 111 111222 57889999984 46788
Q ss_pred EEeCC------cEEEEECCCC--c--eeeeecCCCCCCCeEEEEEecC----CCEEEEEEcCCeEEEEECCCCe------
Q 003871 654 SIHEG------QIDVYEAPTL--N--HTSQLVPDKMDLPITYATYSCD----GKCIYVSCKSGHVKVFDTSTLE------ 713 (790)
Q Consensus 654 ~~~dg------~I~iwd~~~~--~--~~~~~~~~~h~~~v~~l~~s~d----g~~l~sgs~dg~i~vwd~~~~~------ 713 (790)
+|.|. .++||....+ + .+.++. .|..+|++++|.|+ -..||+++.|| |+||.+....
T Consensus 189 vgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~--d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~e 265 (361)
T KOG2445|consen 189 VGSDEDAPHLNKVKIYEYNENGRKWLKVAELP--DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEE 265 (361)
T ss_pred EEcccCCccccceEEEEecCCcceeeeehhcC--CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhh
Confidence 87555 7889886543 2 233443 57999999999996 25789999999 9999987411
Q ss_pred ------EEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 714 ------LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 714 ------~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
....+........+-|.+.|+ .+.|+- .|..|++.|.||.||+|...-
T Consensus 266 e~~~~~~~~~l~v~~vs~~~~H~~~VW--rv~wNm-tGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 266 EVLAPDLMTDLPVEKVSELDDHNGEVW--RVRWNM-TGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred cccCCCCccccceEEeeeccCCCCceE--EEEEee-eeeEEeecCCCceeeehhhhh
Confidence 111111111111123467888 999999 799999999999999998754
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.2e-22 Score=214.18 Aligned_cols=229 Identities=14% Similarity=0.215 Sum_probs=199.2
Q ss_pred CCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE
Q 003871 504 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 579 (790)
Q Consensus 504 ~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~ 579 (790)
.|...|.++..- ++.+++|+ |..+-+|.+.....+..+.+|..+|.++.|+++. +|++|+.+|+|++||+..++.+
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence 377777777765 78888998 7888899998777778899999999999999999 9999999999999999999999
Q ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCC
Q 003871 580 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG 658 (790)
Q Consensus 580 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg 658 (790)
+.+.+|...+.++.|+|-+.+.|+|+.|+.+++||.+. ..+.. ...+|. ..+..+.|+|+|++++.+ .|.
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-----~Gc~~-~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-----KGCSH-TYKSHT---RVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhc-----cCcee-eecCCc---ceeEEEeecCCCceeeccCCcc
Confidence 99999999999999999999999999999999999985 22344 344566 688999999999999996 779
Q ss_pred cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEE
Q 003871 659 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 738 (790)
Q Consensus 659 ~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 738 (790)
.++|||...|+....|.. |...+..+.|+|..-++++|+.|++|++||+++-+.+....+. -..|. +.
T Consensus 177 tvki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--------~~~v~--~~ 244 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--------TDGVR--SL 244 (825)
T ss_pred eeeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--------cCCce--ee
Confidence 999999999999999964 7899999999999999999999999999999998877665421 23455 99
Q ss_pred EEecCCCCEEEEEeCC
Q 003871 739 AAHPLEPNRIALGLTN 754 (790)
Q Consensus 739 ~~sp~d~~~las~s~D 754 (790)
+|+| ++..+++|..+
T Consensus 245 ~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 245 AFNP-DGKIVLSGEQI 259 (825)
T ss_pred eecC-CceeeecCchh
Confidence 9999 89888887655
No 143
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=1.6e-21 Score=197.04 Aligned_cols=277 Identities=10% Similarity=0.034 Sum_probs=210.2
Q ss_pred ccCCCccccccccCCC------CCCCcceeeeccCCCcccccccccCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 325 QIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQE--GRPLDASSGDDSNDSSCFNDNNQSR 396 (790)
Q Consensus 325 ~h~~~v~v~~i~fspd------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~--~h~~~v~~~~~~i~~~~fs~~~~~~ 396 (790)
.|+..|. .++.|.. +..+.|+ |||+....... ....|. ...+.+ .++...
T Consensus 417 ~HGEvVc--AvtIS~~trhVyTgGkgcVK--VWdis~pg~k~-----PvsqLdcl~rdnyi-------RSckL~------ 474 (705)
T KOG0639|consen 417 AHGEVVC--AVTISNPTRHVYTGGKGCVK--VWDISQPGNKS-----PVSQLDCLNRDNYI-------RSCKLL------ 474 (705)
T ss_pred ccCcEEE--EEEecCCcceeEecCCCeEE--EeeccCCCCCC-----ccccccccCcccce-------eeeEec------
Confidence 4666554 7777766 8889999 99985432210 001111 122333 677777
Q ss_pred CCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 003871 397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 476 (790)
Q Consensus 397 s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~ 476 (790)
|||+.| ++|+.-.++.|||+.. .....+..+. ...-...+++.|||.+..+++..||.|.|||+.
T Consensus 475 -pdgrtL----ivGGeastlsiWDLAa---pTprikaelt--ssapaCyALa~spDakvcFsccsdGnI~vwDLh----- 539 (705)
T KOG0639|consen 475 -PDGRTL----IVGGEASTLSIWDLAA---PTPRIKAELT--SSAPACYALAISPDAKVCFSCCSDGNIAVWDLH----- 539 (705)
T ss_pred -CCCceE----EeccccceeeeeeccC---CCcchhhhcC--CcchhhhhhhcCCccceeeeeccCCcEEEEEcc-----
Confidence 999999 9999999999999974 2222222221 123456778888888877777777777666654
Q ss_pred ccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCC
Q 003871 477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQ 556 (790)
Q Consensus 477 ~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~ 556 (790)
+...++.|.+|.+.+.|+.+++|
T Consensus 540 ---------------------------------------------------------nq~~VrqfqGhtDGascIdis~d 562 (705)
T KOG0639|consen 540 ---------------------------------------------------------NQTLVRQFQGHTDGASCIDISKD 562 (705)
T ss_pred ---------------------------------------------------------cceeeecccCCCCCceeEEecCC
Confidence 45567889999999999999999
Q ss_pred C-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCC
Q 003871 557 D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 635 (790)
Q Consensus 557 g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~ 635 (790)
| .|.+|+-|.+|+.||++++..+.... .+..|.++-++|++.+++.|-.++.+.|-.....++ .+ ..-|.
T Consensus 563 GtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-----yq--lhlhe- 633 (705)
T KOG0639|consen 563 GTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-----YQ--LHLHE- 633 (705)
T ss_pred CceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccc-----ee--ecccc-
Confidence 9 99999999999999999987654433 456799999999999999999999999888765321 11 12344
Q ss_pred CCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 003871 636 ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 636 ~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~ 709 (790)
.-|.++.|.+.|+++++ |.|+-+..|...-|..+...+ ...+|.++.+|.|.+||+||+.|....||.+
T Consensus 634 --ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 634 --SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred --cEEEEEEecccCceeeecCchhhhhhccCccccceeecc---ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 68999999999999998 799999999988887766554 3789999999999999999999988888865
No 144
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=180.03 Aligned_cols=277 Identities=11% Similarity=0.032 Sum_probs=208.1
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
.|+.|+ +-|.++ |+|+.||.|.|||+.+ ....++. .+|..+|.+++||+||+.|++++.|..
T Consensus 27 ~~~~Fs-------~~G~~l----AvGc~nG~vvI~D~~T----~~iar~l---saH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 27 ECCQFS-------RWGDYL----AVGCANGRVVIYDFDT----FRIARML---SAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred ceEEec-------cCccee----eeeccCCcEEEEEccc----cchhhhh---hccccceeEEEecCCCCEeeeecCCce
Confidence 799999 889999 9999999999999974 3332222 379999999999999999999999999
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec----CcEEEEecCCeEEEEECCCCcEEEE
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSASGGKISIFSLETFQTLAT 540 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s----~~~l~s~sdg~I~vwd~~~~~~~~~ 540 (790)
+.+||+..+.. +.+ . ...++|+...|+ +..+++--+..-.+-++..+ .++
T Consensus 89 i~lwDl~~gs~--------------------l~r-i---rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~ 142 (405)
T KOG1273|consen 89 IKLWDLLKGSP--------------------LKR-I---RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHS 142 (405)
T ss_pred eEEEeccCCCc--------------------eeE-E---EccCccceeeeccccCCeEEEEEecCCcEEEEecCC--cee
Confidence 99999876543 211 1 267889999998 33344433554555555442 222
Q ss_pred EcC--C----CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCC-CCEEEEEEeCCCCEEEEEeCCCcEEE
Q 003871 541 FAN--P----PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADAQLCV 612 (790)
Q Consensus 541 ~~~--~----~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-~~v~~l~~spdg~~l~s~s~dg~I~v 612 (790)
+-. . .....+..|.+.| ++++|...|.+.++|..+-+++..++-.+ ..|..+.++..|+.++.-+.|+.||.
T Consensus 143 ~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ 222 (405)
T KOG1273|consen 143 VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRT 222 (405)
T ss_pred eccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEE
Confidence 211 1 1112344688899 99999999999999999999998887655 78999999999999999999999999
Q ss_pred EECCC-------CceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEECCCCceeeeecCCCCCCCe
Q 003871 613 WDAVG-------WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPI 683 (790)
Q Consensus 613 wd~~~-------~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~~~~~~~~~~~~~h~~~v 683 (790)
|+++. ++......++.+... ..-.+++|+.+|.|++.+ .-..++||....|.+++.+.+.. +...
T Consensus 223 ye~~di~~~~r~~e~e~~~K~qDvVNk-----~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k-gE~l 296 (405)
T KOG1273|consen 223 YEISDIDDEGRDGEVEPEHKLQDVVNK-----LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK-GEEL 296 (405)
T ss_pred EehhhhcccCccCCcChhHHHHHHHhh-----hhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc-hhhe
Confidence 99873 111111112211111 345678999999999985 55679999999999999986632 4678
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003871 684 TYATYSCDGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 684 ~~l~~s~dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
..+.|+|-...+++- ..|.|++|....-
T Consensus 297 ~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 297 LDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred eecccccceeeeeec-cCCceEEEEeecc
Confidence 899999998888877 6799999986543
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=2.6e-20 Score=187.21 Aligned_cols=291 Identities=18% Similarity=0.225 Sum_probs=209.4
Q ss_pred CCCceEEEEEcCCCC--EEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 440 FGGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 440 h~~~V~~l~~spdg~--~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
|..+|++++|+|..+ .+|+|..-|.|-+||+.+... + .++... ...|..+|.++.|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~--------------d-~d~v~~----f~~hs~~Vs~l~F~P~ 245 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK--------------D-KDGVYL----FTPHSGPVSGLKFSPA 245 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC--------------c-cCceEE----eccCCccccceEecCC
Confidence 689999999999765 566677799999999964322 0 111111 12699999999999
Q ss_pred -CcEEEEec-CCeEEEEECCCCcEEEEEcC--CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEEEcCCCCCE
Q 003871 516 -GSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRI 589 (790)
Q Consensus 516 -~~~l~s~s-dg~I~vwd~~~~~~~~~~~~--~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~-~~~l~~h~~~v 589 (790)
...+++.+ ||+|++-|++++..-..+.. ....+..+.|+.+. .++.|..=|...+||++++.. ...+..|...|
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 45566666 99999999987654333332 44456788888888 777777777999999998754 66677799999
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECC-
Q 003871 590 TCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP- 666 (790)
Q Consensus 590 ~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~- 666 (790)
++++++| ...+||+||.|++.+|||++.-.......+. ...|. ..|.+..|||.+..|++ +.|..|+|||..
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls--t~~Hr---rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~ 400 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS--TLPHR---RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC 400 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCccee--ccccc---ceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence 9999999 4567999999999999999873322211233 22344 58999999998877777 799999999983
Q ss_pred ---CCceeeeecCCC-CCC--CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEE
Q 003871 667 ---TLNHTSQLVPDK-MDL--PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 740 (790)
Q Consensus 667 ---~~~~~~~~~~~~-h~~--~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 740 (790)
.-.+..++.... +.. ......|.|+..++++|-.-..|-|+|-..++.+..+-.. ....|.+ -..|
T Consensus 401 ~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P-------~~~tI~~-vn~~ 472 (498)
T KOG4328|consen 401 ISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP-------ESSTIPS-VNEF 472 (498)
T ss_pred ccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc-------ccccccc-ceee
Confidence 333344443211 112 2345689999999999999999999999999988775421 1112321 4589
Q ss_pred ecCCCC-EEEEEeCCCcEEEEecC
Q 003871 741 HPLEPN-RIALGLTNGRVHVIEPL 763 (790)
Q Consensus 741 sp~d~~-~las~s~Dg~i~iW~~~ 763 (790)
|| -+. ++|.++..|.|+||.-.
T Consensus 473 HP-~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 473 HP-MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cc-cccceeccCCccceEEEEecC
Confidence 99 455 55555677888888643
No 146
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=3.9e-22 Score=210.26 Aligned_cols=248 Identities=18% Similarity=0.199 Sum_probs=208.9
Q ss_pred eeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccc
Q 003871 408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQ 487 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~ 487 (790)
+....+-.+++||... . ..|...|.++..-..++.+++|+.|..+.+|.+.....
T Consensus 8 m~~~~~t~Lr~~~~~~---------~----~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~------------ 62 (825)
T KOG0267|consen 8 MKTKRATKLRVWDTRE---------F----VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA------------ 62 (825)
T ss_pred ceeeeeeccccccchh---------h----hhhhhhhceeeeeccceeeccCCCceeeccccccCCch------------
Confidence 6666667788898863 1 14788889988877889999999999999998764222
Q ss_pred cccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEe
Q 003871 488 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF 563 (790)
Q Consensus 488 i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs 563 (790)
.+. ..+|..+|.++.|+ ..+|++|+ +|+|++||++.++.++++.+|...+.++.|+|-+ +.++|+
T Consensus 63 --------i~S---~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gS 131 (825)
T KOG0267|consen 63 --------ITS---LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGS 131 (825)
T ss_pred --------hhe---eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccc
Confidence 111 23799999999999 55666676 8999999999999999999999999999999999 999999
Q ss_pred CCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEE
Q 003871 564 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 643 (790)
Q Consensus 564 ~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i 643 (790)
.|+.+.+||.+...+.+.+.+|...|..+.|+|+|+++++|++|.++++||...|+.. . -...|. +.+.++
T Consensus 132 tdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~-----~-ef~~~e---~~v~sl 202 (825)
T KOG0267|consen 132 TDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS-----K-EFKSHE---GKVQSL 202 (825)
T ss_pred ccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc-----c-cccccc---cccccc
Confidence 9999999999988899999999999999999999999999999999999999886533 2 223455 689999
Q ss_pred EEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC
Q 003871 644 QFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 702 (790)
Q Consensus 644 ~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg 702 (790)
.|+|..-.++.| .|+++++||+++-+.+....+ ....|.+.+|+|+++.+++|....
T Consensus 203 e~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~--~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 203 EFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP--ETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccCchhhhhccCCCCceeeeeccceeEEeeccCC--ccCCceeeeecCCceeeecCchhh
Confidence 999998777774 999999999998887776654 378899999999999999887654
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=3.1e-20 Score=187.63 Aligned_cols=286 Identities=16% Similarity=0.181 Sum_probs=211.6
Q ss_pred eccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC--CCcEEEEecCCCCcccccccccccc
Q 003871 409 CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMES 486 (790)
Q Consensus 409 t~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~--dg~i~vw~~~~~~~~~g~~~~~~~~ 486 (790)
.++...++++||+....-...... +.....+.++.|+.... |++++. |..+++|.-...
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~-----~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~------------- 67 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVH-----QTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK------------- 67 (673)
T ss_pred eeccCCceEEeecccccCcccccc-----CCCCCcceeeeccccce-EEEeecCCceeEEEecccCC-------------
Confidence 344446899999975321111111 11234489999998775 555444 788998864431
Q ss_pred ccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEE
Q 003871 487 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG 562 (790)
Q Consensus 487 ~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg 562 (790)
.+.+...... ....-.|++.. ..++++|+ .+.|+|||++...+.+.+.+|...|+++.++-.+ +||++
T Consensus 68 ------~~~Vp~~~k~--~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsv 139 (673)
T KOG4378|consen 68 ------TPEVPRVRKL--TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASV 139 (673)
T ss_pred ------CCccceeecc--ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEe
Confidence 1111111111 12233444444 67888888 8999999999777788889999999999999988 99999
Q ss_pred eCCCcEEEEeCCCCceEEEEcCC-CCCEEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCe
Q 003871 563 FDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 640 (790)
Q Consensus 563 s~dg~I~iwd~~~~~~~~~l~~h-~~~v~~l~~spdg~~-l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v 640 (790)
+..|.|.+..+.++.....|... ...|.-+.|+|..++ |.+++++|.|.+||+... .++......|. .+.
T Consensus 140 s~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-----sp~~~~~~~Hs---AP~ 211 (673)
T KOG4378|consen 140 SDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-----SPIFHASEAHS---APC 211 (673)
T ss_pred ccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC-----Ccccchhhhcc---CCc
Confidence 99999999999998777777643 345668999997665 678999999999999873 34444666677 789
Q ss_pred EEEEEeCCCCEEEE--EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEE
Q 003871 641 NHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRCQ 717 (790)
Q Consensus 641 ~~i~~sp~~~~l~~--~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~-~~~~~ 717 (790)
..|+|+|....|++ |.|..|.+||.+..+....+.. ..+...++|+++|.+|++|...|.|+.||++.. .++.+
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV 288 (673)
T ss_pred CcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence 99999998876665 6999999999998877777754 678999999999999999999999999999865 45666
Q ss_pred eccccccCCCCcccccceEEEEEec
Q 003871 718 INLTAYAQPGTISLELYPLVIAAHP 742 (790)
Q Consensus 718 ~~~~~~~~~gh~~~~v~~~~v~~sp 742 (790)
+.. | +..|. +++|-|
T Consensus 289 ~sa-------h-~~sVt--~vafq~ 303 (673)
T KOG4378|consen 289 RSA-------H-DASVT--RVAFQP 303 (673)
T ss_pred eee-------c-cccee--EEEeee
Confidence 543 3 44566 888888
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=4.3e-20 Score=177.62 Aligned_cols=278 Identities=14% Similarity=0.146 Sum_probs=197.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccc-ccccccccccCCCceeeeecccCCCCCCeEEEEec------
Q 003871 443 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEE-NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------ 515 (790)
Q Consensus 443 ~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s------ 515 (790)
-...+.|||||..|++-+.|..+.+|++.......+.. ...+ .+.....-.....|+..+|-
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~-----------~~~~~~r~~eg~tvydy~wYs~M~s~ 119 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNF-----------SKHLSYRYQEGETVYDYCWYSRMKSD 119 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCcccc-----------ccceeEEeccCCEEEEEEeeeccccC
Confidence 34567899999999999999999999987644311100 0000 00000000234556666654
Q ss_pred ---CcEEEEec-CCeEEEEECCCCcEEEEEcCC--CC---CeEEEEEcCCC-eEEEEeCCCcEEEEeC-CCCceE--EEE
Q 003871 516 ---GSHLFSAS-GGKISIFSLETFQTLATFANP--PP---IATYFILLPQD-LFAFGFDDSSILVHCP-CTKKTK--AKL 582 (790)
Q Consensus 516 ---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~--~~---~v~~l~~s~~g-~l~sgs~dg~I~iwd~-~~~~~~--~~l 582 (790)
..++++.+ +.-|++||.-+|+....+.+. .. ...+++|+||| +|++|. .+.|+++|+ +.|... ...
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh
Confidence 35666666 899999999999988887643 22 34789999999 887765 679999999 555322 111
Q ss_pred -----cCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-
Q 003871 583 -----KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI- 655 (790)
Q Consensus 583 -----~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~- 655 (790)
.+..+-+.+++|+| +.+.++.|+...++-||.-.. ..+++ +..+|. +.|+.+.|.++|..|.+|
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-----~~pl~-llggh~---gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-----RRPLQ-LLGGHG---GGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC-----CCcee-eecccC---CCeeeEEeccCcCeecccc
Confidence 12367789999999 566899999999998888776 35666 556777 799999999999999996
Q ss_pred -eCCcEEEEECCCCc-eeeeecCCCCCC-CeEEEEE--ecCCCEEEEEEcCCeEEEEECCC-CeEEEEeccccccCCCCc
Q 003871 656 -HEGQIDVYEAPTLN-HTSQLVPDKMDL-PITYATY--SCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTI 729 (790)
Q Consensus 656 -~dg~I~iwd~~~~~-~~~~~~~~~h~~-~v~~l~~--s~dg~~l~sgs~dg~i~vwd~~~-~~~~~~~~~~~~~~~gh~ 729 (790)
.|..|..||++..+ ++..+.. |.. .-.++-| .|+|++|++|+.||.|++||+++ |..+..+. .+
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L~r--hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--------~~ 339 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYALER--HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--------NY 339 (406)
T ss_pred cCCCeEEEEeehhccchhhhhhh--hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--------cc
Confidence 68899999998543 3444432 322 3334444 58999999999999999999998 66455443 23
Q ss_pred ccccceEEEEEecCCCCEEEEEeCC
Q 003871 730 SLELYPLVIAAHPLEPNRIALGLTN 754 (790)
Q Consensus 730 ~~~v~~~~v~~sp~d~~~las~s~D 754 (790)
+..++ .|+++| --.++|+++..
T Consensus 340 sd~vN--gvslnP-~mpilatssGq 361 (406)
T KOG2919|consen 340 SDTVN--GVSLNP-IMPILATSSGQ 361 (406)
T ss_pred ccccc--ceecCc-ccceeeeccCc
Confidence 55677 999999 57788887644
No 149
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=9.8e-20 Score=189.78 Aligned_cols=259 Identities=14% Similarity=0.138 Sum_probs=203.0
Q ss_pred ccccccCCC------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 003871 332 PYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDAD 405 (790)
Q Consensus 332 v~~i~fspd------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~ 405 (790)
|..++|-|| ..++.+. ++|+..|..+ .+++||.+.| +|++|+ .||+.+
T Consensus 15 i~d~afkPDGsqL~lAAg~rll--iyD~ndG~ll--------qtLKgHKDtV-------ycVAys-------~dGkrF-- 68 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGSRLL--VYDTSDGTLL--------QPLKGHKDTV-------YCVAYA-------KDGKRF-- 68 (1081)
T ss_pred hheeEECCCCceEEEecCCEEE--EEeCCCcccc--------cccccccceE-------EEEEEc-------cCCcee--
Confidence 459999999 6677777 9999999998 9999999999 999999 999999
Q ss_pred cceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccc
Q 003871 406 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNME 485 (790)
Q Consensus 406 ~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~ 485 (790)
|+|+.|..|.+|+-.- .-..+. .|.+.|.|+.|+|-...|++++-+. .-+|..
T Consensus 69 --ASG~aDK~VI~W~~kl----EG~LkY-----SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~--------------- 121 (1081)
T KOG1538|consen 69 --ASGSADKSVIIWTSKL----EGILKY-----SHNDAIQCMSFNPITHQLASCSLSD-FGLWSP--------------- 121 (1081)
T ss_pred --ccCCCceeEEEecccc----cceeee-----ccCCeeeEeecCchHHHhhhcchhh-ccccCh---------------
Confidence 9999999999998752 222332 4999999999999999999988642 444543
Q ss_pred cccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEc---CCCCCeEEEEEcCCC--
Q 003871 486 SQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA---NPPPIATYFILLPQD-- 557 (790)
Q Consensus 486 ~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~---~~~~~v~~l~~s~~g-- 557 (790)
+...+.+. .....|.+.+|. |.+++.|- +|+|.+-+-. |+..-.+. +...+|.+++|+|..
T Consensus 122 ------~qK~V~K~----kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~ 190 (1081)
T KOG1538|consen 122 ------EQKSVSKH----KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGE 190 (1081)
T ss_pred ------hhhhHHhh----hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCC
Confidence 33323221 245678889998 89999998 9999998754 44433343 467789999999874
Q ss_pred ----eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCC
Q 003871 558 ----LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 633 (790)
Q Consensus 558 ----~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 633 (790)
.+++.....++.+|.+. |+.+..-+.-.....|+.+-|+|.++..|+.|+.+++|--++ ..+.++-. .
T Consensus 191 G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G------vrLGTvg~-~ 262 (1081)
T KOG1538|consen 191 GRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG------VRLGTVGE-Q 262 (1081)
T ss_pred CccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC------eEEeeccc-c
Confidence 78888999999999876 666654444445677899999999999999999999997665 33443322 3
Q ss_pred CCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEEC
Q 003871 634 VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (790)
Q Consensus 634 ~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~ 665 (790)
+ .+|+.++..|++.+++.| .||+|..|++
T Consensus 263 D---~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 263 D---SWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred c---eeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 3 599999999999999985 8999977765
No 150
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.4e-19 Score=173.15 Aligned_cols=257 Identities=14% Similarity=0.169 Sum_probs=185.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCce-eeeeccCCCCCCceEEEE
Q 003871 370 QEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLI 448 (790)
Q Consensus 370 l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~-~~~~l~~~~h~~~V~~l~ 448 (790)
-.+|.+-| .++.|. +-|+.+ |||+.|++++|||.+....+-.+ -.++ .|.+.|+.+.
T Consensus 9 ~s~h~Dli-------hdVs~D-------~~GRRm----AtCSsDq~vkI~d~~~~s~~W~~Ts~Wr----ah~~Si~rV~ 66 (361)
T KOG2445|consen 9 DSGHKDLI-------HDVSFD-------FYGRRM----ATCSSDQTVKIWDSTSDSGTWSCTSSWR----AHDGSIWRVV 66 (361)
T ss_pred ccCCccee-------eeeeec-------ccCcee----eeccCCCcEEEEeccCCCCceEEeeeEE----ecCCcEEEEE
Confidence 45788888 999997 889999 99999999999997531111112 2222 5999999999
Q ss_pred EcC--CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec----CcEEEEe
Q 003871 449 YSH--SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSA 522 (790)
Q Consensus 449 ~sp--dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s----~~~l~s~ 522 (790)
|.+ -|+.+|+++.|+++.||.-+.... +....+.............|+.+.|. |-.++++
T Consensus 67 WAhPEfGqvvA~cS~Drtv~iWEE~~~~~--------------~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~ 132 (361)
T KOG2445|consen 67 WAHPEFGQVVATCSYDRTVSIWEEQEKSE--------------EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAA 132 (361)
T ss_pred ecCccccceEEEEecCCceeeeeeccccc--------------ccccceeEEEEEeecCCcceeEEEecchhcceEEEEe
Confidence 976 489999999999999998642211 11111222222223577899999999 7788998
Q ss_pred c-CCeEEEEECCCCcEE------EEEc-------CCCCCeEEEEEcCCC----eEEEEeCC-----CcEEEEeCCCCc--
Q 003871 523 S-GGKISIFSLETFQTL------ATFA-------NPPPIATYFILLPQD----LFAFGFDD-----SSILVHCPCTKK-- 577 (790)
Q Consensus 523 s-dg~I~vwd~~~~~~~------~~~~-------~~~~~v~~l~~s~~g----~l~sgs~d-----g~I~iwd~~~~~-- 577 (790)
+ ||.++||+....-.+ ..+. .+..+..|+.|+|.- +||+|+.+ +.++||....+.
T Consensus 133 ~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK 212 (361)
T KOG2445|consen 133 SADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK 212 (361)
T ss_pred ccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce
Confidence 8 999999987543222 2222 345567899999765 78888876 478888765432
Q ss_pred --eEEEEcCCCCCEEEEEEeCC-C---CEEEEEeCCCcEEEEECCCCc------------eeeceeeee--eccCCCCCC
Q 003871 578 --TKAKLKGHQNRITCLAYSLS-L---NVLVSSGADAQLCVWDAVGWK------------KLCSKFLHS--FQTGLVPET 637 (790)
Q Consensus 578 --~~~~l~~h~~~v~~l~~spd-g---~~l~s~s~dg~I~vwd~~~~~------------~~~~~~l~~--~~~~~~~~~ 637 (790)
.+..+.+|+.+|++++|.|+ | ..||+++.|| |+||.++... .....++.. ...+|.
T Consensus 213 w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~--- 288 (361)
T KOG2445|consen 213 WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHN--- 288 (361)
T ss_pred eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCC---
Confidence 34567789999999999995 3 4699999999 9999998411 111122221 233455
Q ss_pred CCeEEEEEeCCCCEEEE-EeCCcEEEEECC
Q 003871 638 TIVNHIQFHPDQIHLLS-IHEGQIDVYEAP 666 (790)
Q Consensus 638 ~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~ 666 (790)
+.|..+.|+-.|..|++ |.||.|++|...
T Consensus 289 ~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 289 GEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred CceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 89999999999999998 699999999754
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=3.5e-20 Score=187.34 Aligned_cols=285 Identities=12% Similarity=0.108 Sum_probs=209.2
Q ss_pred CCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeecc
Q 003871 343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQ 422 (790)
Q Consensus 343 d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~ 422 (790)
...++ +||...-... ..+-.|+.+- .+.+++|+ .....+ +++.+.|..+++|.-.
T Consensus 11 gd~~k--l~D~s~~~~~--------~~~~~~t~~p-----g~~s~~w~-------~~n~lv---vas~~gdk~~~~~~K~ 65 (673)
T KOG4378|consen 11 GDKTK--LSDFSDLETK--------SEYVHQTAEP-----GDFSFNWQ-------RRNFLV---VASMAGDKVMRIKEKD 65 (673)
T ss_pred CCceE--EeecccccCc--------cccccCCCCC-----cceeeecc-------ccceEE---EeecCCceeEEEeccc
Confidence 44678 8887655433 2333333221 12788887 333222 3666788899999886
Q ss_pred ccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeeccc
Q 003871 423 LINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA 502 (790)
Q Consensus 423 ~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~ 502 (790)
.. ++.+..+.. ...+.-.|++......|+++||..+.|+|||++... +.+ ..
T Consensus 66 g~--~~~Vp~~~k---~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl---------------------~hr--~l 117 (673)
T KOG4378|consen 66 GK--TPEVPRVRK---LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKL---------------------IHR--FL 117 (673)
T ss_pred CC--CCccceeec---cccchHHHHhhhhcceeeeccCcCceeeehhhHHHH---------------------Hhh--hc
Confidence 42 233333221 122344555555556899999999999999987422 111 23
Q ss_pred CCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCC-CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC
Q 003871 503 ADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP-PPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 576 (790)
Q Consensus 503 ~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~ 576 (790)
.+|...|+++.++ +.+||+++ .|.|.+..+.++.....|... ...|.-+.++|.. +|.+++.+|.|.+||+...
T Consensus 118 kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~ 197 (673)
T KOG4378|consen 118 KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM 197 (673)
T ss_pred cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC
Confidence 4799999999999 99999999 789999999998888888654 4456789999998 8889999999999999877
Q ss_pred ceEEEE-cCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE
Q 003871 577 KTKAKL-KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (790)
Q Consensus 577 ~~~~~l-~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~ 654 (790)
.++..+ +.|+.+...++|+| +..+|++.+.|..|.+||.+..+. ..++... .+.+.++|+++|.+|++
T Consensus 198 sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s-----~~~l~y~-----~Plstvaf~~~G~~L~a 267 (673)
T KOG4378|consen 198 SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS-----TDRLTYS-----HPLSTVAFSECGTYLCA 267 (673)
T ss_pred CcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-----cceeeec-----CCcceeeecCCceEEEe
Confidence 776554 56999999999999 567789999999999999987332 2222223 47899999999999999
Q ss_pred E-eCCcEEEEECCCCc-eeeeecCCCCCCCeEEEEEecCC
Q 003871 655 I-HEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDG 692 (790)
Q Consensus 655 ~-~dg~I~iwd~~~~~-~~~~~~~~~h~~~v~~l~~s~dg 692 (790)
| ..|.|..||++..+ ++.++. .|...|++++|-|.-
T Consensus 268 G~s~G~~i~YD~R~~k~Pv~v~s--ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 268 GNSKGELIAYDMRSTKAPVAVRS--AHDASVTRVAFQPSP 305 (673)
T ss_pred ecCCceEEEEecccCCCCceEee--ecccceeEEEeeecc
Confidence 7 88999999998654 555554 378889999998754
No 152
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=1.8e-19 Score=186.94 Aligned_cols=146 Identities=20% Similarity=0.331 Sum_probs=111.6
Q ss_pred eCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeC-CCCEEEE-EeCCcEEEEECCCCce-------eeeec
Q 003871 605 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNH-------TSQLV 675 (790)
Q Consensus 605 s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp-~~~~l~~-~~dg~I~iwd~~~~~~-------~~~~~ 675 (790)
+..|.|-||+++.........+..+..+ ..|+.+.|.| |...||+ +.||.|++|.+..+.. -..+.
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ng-----t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt 674 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNG-----TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT 674 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccC-----ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee
Confidence 3456677777765322222233333333 5799999999 5677887 5999999999875432 23333
Q ss_pred CCCCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC
Q 003871 676 PDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 754 (790)
Q Consensus 676 ~~~h~~~v~~l~~s~d-g~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D 754 (790)
. |...|+++.|+|- ...|++++.|.+|++||+.+++....+. ||.+ .|. +++||| +|+.+|+.+.|
T Consensus 675 ~--h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-------gHtd-qIf--~~AWSp-dGr~~AtVcKD 741 (1012)
T KOG1445|consen 675 I--HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-------GHTD-QIF--GIAWSP-DGRRIATVCKD 741 (1012)
T ss_pred c--ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-------cCcC-cee--EEEECC-CCcceeeeecC
Confidence 2 6889999999984 5688999999999999999999888887 7744 555 999999 99999999999
Q ss_pred CcEEEEecCCCccc
Q 003871 755 GRVHVIEPLESEVE 768 (790)
Q Consensus 755 g~i~iW~~~~~~~~ 768 (790)
|+|++|++.++++.
T Consensus 742 g~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQP 755 (1012)
T ss_pred ceEEEeCCCCCCCc
Confidence 99999999988644
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.9e-19 Score=180.54 Aligned_cols=234 Identities=14% Similarity=0.143 Sum_probs=180.9
Q ss_pred CcEEEEec-CCeEEEEECCCCcE---E------------------EEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEE
Q 003871 516 GSHLFSAS-GGKISIFSLETFQT---L------------------ATFANPPPIATYFILLPQD--LFAFGFDDSSILVH 571 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~~---~------------------~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iw 571 (790)
|+++|.|+ +..|.|||+.--.. . ..-.+|+..|-+++|+..- .||+||.|.+|.+|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 78999999 99999999852110 0 0113577788888888776 99999999999999
Q ss_pred eCCCCceEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCC
Q 003871 572 CPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 650 (790)
Q Consensus 572 d~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~ 650 (790)
|+.+|++...+..|.+.|.++.|+| .+.+|++|+.|++|.+.|.+.... .....+ + . +.|-.++|.|.+.
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-s~~~wk-~----~---g~VEkv~w~~~se 342 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-SGKEWK-F----D---GEVEKVAWDPHSE 342 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-cCceEE-e----c---cceEEEEecCCCc
Confidence 9999999999999999999999999 578899999999999999995111 111222 1 1 5799999999876
Q ss_pred EEEE-E-eCCcEEEEECCCC-ceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEeccccccCC
Q 003871 651 HLLS-I-HEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 726 (790)
Q Consensus 651 ~l~~-~-~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~ 726 (790)
..+. + .||.++-+|++.. +++.++.. |..+|.++++++.- .++++++.|+.|++|++.......+.. +.+.
T Consensus 343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~~~~-- 417 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNPGKPVWTLKA--HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-HSFK-- 417 (463)
T ss_pred eeEEEecCCceEEeeecCCCCCceeEEEe--ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-cccc--
Confidence 5554 4 8999999999975 77777764 79999999999754 578899999999999998655432211 1110
Q ss_pred CCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccc
Q 003871 727 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 727 gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
-+... |.++.|....++|.||..+.++|||+.+..+.
T Consensus 418 ---~~rl~--c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 418 ---LGRLH--CFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ---cccee--ecccCCCcceEEEecCccceEEEeecccChhH
Confidence 11233 77888866678999999999999999887654
No 154
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=1.6e-19 Score=177.13 Aligned_cols=245 Identities=18% Similarity=0.237 Sum_probs=183.9
Q ss_pred CCCCCeEEEEec--CcEEEEe--c-CCeEEEEECCC----------------CcEEEEEcCCCCCeEEEEEcCCC--eEE
Q 003871 504 DPKDSISCFALR--GSHLFSA--S-GGKISIFSLET----------------FQTLATFANPPPIATYFILLPQD--LFA 560 (790)
Q Consensus 504 ~~~~~V~~l~~s--~~~l~s~--s-dg~I~vwd~~~----------------~~~~~~~~~~~~~v~~l~~s~~g--~l~ 560 (790)
+|.+.+..+.-+ ++-.+++ + .|.|+||++.. .+++.++.+|...=..++|||-. .++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 466666666666 4444444 4 59999999742 34567788888888999999955 799
Q ss_pred EEeCCCcEEEEeCCCCceE---EEEcCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCC
Q 003871 561 FGFDDSSILVHCPCTKKTK---AKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 636 (790)
Q Consensus 561 sgs~dg~I~iwd~~~~~~~---~~l~~h~~~v~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~ 636 (790)
+|..-+.|++|...+|.-. ..|.+|+..|-.++|||. ...+++||-||+|+|||++.+.... .+. ...|.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--~~~--~kAh~-- 302 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--AVS--TKAHN-- 302 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc--eeE--eeccC--
Confidence 9998999999999887532 346789999999999994 5689999999999999999974322 222 24555
Q ss_pred CCCeEEEEEeCCCCEEEEE-eCCcEEEEECCC---CceeeeecCCCCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCC
Q 003871 637 TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT---LNHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 637 ~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~---~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs~dg~i~vwd~~~ 711 (790)
+.|+-|.|+..-.+||+| .||+++|||++. ++++.+|.. |..+|+++.|+|. ...++++|.|..|.+||+..
T Consensus 303 -sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 303 -SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred -CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 689999999988888886 889999999985 567788864 7999999999985 45788899999999999863
Q ss_pred CeE-----------EEEeccc-cccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEec
Q 003871 712 LEL-----------RCQINLT-AYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 712 ~~~-----------~~~~~~~-~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
..- +..+.+. -|.-.| ...+. .+.||+....++++.+.|| +.||..
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqG--Qke~K--evhWH~QiPG~lvsTa~dG-fnVfkt 437 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQG--QKEVK--EVHWHRQIPGLLVSTAIDG-FNVFKT 437 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecc--hhHhh--hheeccCCCCeEEEecccc-eeEEEe
Confidence 211 1111110 011113 34566 8999998888999999998 566643
No 155
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=2.2e-18 Score=171.04 Aligned_cols=300 Identities=15% Similarity=0.130 Sum_probs=215.6
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--Cc
Q 003871 441 GGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 517 (790)
Q Consensus 441 ~~~V~~l~~spdg~-~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~ 517 (790)
..+|.++.|.+++. .+++|+.|..|++|.+.......|. ..+........|...|+++.|+ |+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~--------------~~V~y~s~Ls~H~~aVN~vRf~p~ge 78 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD--------------MKVEYLSSLSRHTRAVNVVRFSPDGE 78 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc--------------eeEEEeecccCCcceeEEEEEcCCcC
Confidence 46799999999876 9999999999999998765431110 1222222334799999999999 89
Q ss_pred EEEEec-CCeEEEEECC--------C--------CcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE
Q 003871 518 HLFSAS-GGKISIFSLE--------T--------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 579 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~--------~--------~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~ 579 (790)
.+++|+ +|.|.+|... + ....+.+.+|...|..++|+|++ .+++|+.|..+++||+..|...
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL 158 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE
Confidence 999999 6999999765 2 22345667899999999999999 9999999999999999999999
Q ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeecc--CCC-C-----------CCCCeEEEEE
Q 003871 580 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT--GLV-P-----------ETTIVNHIQF 645 (790)
Q Consensus 580 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~--~~~-~-----------~~~~v~~i~~ 645 (790)
..+.+|...|..++|.|-++++++-+.|...+.+.+...+.........++. ++. . ...-...++|
T Consensus 159 ~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 159 AILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred eeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 9999999999999999999999999999988888776533222111111111 000 0 0123445789
Q ss_pred eCCCCEEEE--E---eCCc-----EEEEECCCC-ceeeeecCCCCCCCeEEEEEec--------C---------CCEEEE
Q 003871 646 HPDQIHLLS--I---HEGQ-----IDVYEAPTL-NHTSQLVPDKMDLPITYATYSC--------D---------GKCIYV 697 (790)
Q Consensus 646 sp~~~~l~~--~---~dg~-----I~iwd~~~~-~~~~~~~~~~h~~~v~~l~~s~--------d---------g~~l~s 697 (790)
+|+|.++++ + ..+. .++|+-... ++...+.. -..+...+.|+| + -+.+++
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 999999987 2 2333 355554322 23333322 255566666665 1 123333
Q ss_pred EEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 698 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 698 gs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
-...+.|++||.++..+...... .|-..++ +++|++ ||..|+..|.||-.-+-.++..|
T Consensus 317 iAt~~svyvydtq~~~P~~~v~n-------ihy~~iT--Diaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 317 IATKNSVYVYDTQTLEPLAVVDN-------IHYSAIT--DIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EeecceEEEeccccccceEEEee-------eeeeeec--ceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 44467899999999888877653 2344566 999999 89999999999988877766554
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=6.3e-19 Score=177.28 Aligned_cols=297 Identities=13% Similarity=0.091 Sum_probs=207.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCcccceeccCCCceEeeeccc-cCCCCceeeeeccCCCCCCceE
Q 003871 369 NQEGRPLDASSGDDSNDSSCFNDNNQSRESTS--LPDADSAVCAKSLEKSVNLKLQL-INEPSECRTLLLPDNSFGGRVV 445 (790)
Q Consensus 369 ~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg--~~la~~~at~s~d~~i~iwd~~~-~~~~~~~~~~~l~~~~h~~~V~ 445 (790)
..+-+...| ++++|+ |.- +.+ |+|+.-|+|-+||+.. .++...+..+ +.|..+|.
T Consensus 181 v~kv~~~Ri-------t~l~fH-------Pt~~~~lv----a~GdK~G~VG~Wn~~~~~~d~d~v~~f----~~hs~~Vs 238 (498)
T KOG4328|consen 181 VAKVTDRRI-------TSLAFH-------PTENRKLV----AVGDKGGQVGLWNFGTQEKDKDGVYLF----TPHSGPVS 238 (498)
T ss_pred eeEecccce-------EEEEec-------ccCcceEE----EEccCCCcEEEEecCCCCCccCceEEe----ccCCcccc
Confidence 334566777 999998 544 456 9999999999999952 1111222221 46999999
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEe
Q 003871 446 RLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 522 (790)
Q Consensus 446 ~l~~spdg-~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~ 522 (790)
++.|+|.. ..+++.+.||+|+.-|+++... -.++. .......+.++.|+ ...++.+
T Consensus 239 ~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~----------e~v~s-----------~~~d~~~fs~~d~~~e~~~vl~~ 297 (498)
T KOG4328|consen 239 GLKFSPANTSQIYSSSYDGTIRLQDFEGNIS----------EEVLS-----------LDTDNIWFSSLDFSAESRSVLFG 297 (498)
T ss_pred ceEecCCChhheeeeccCceeeeeeecchhh----------HHHhh-----------cCccceeeeeccccCCCccEEEe
Confidence 99999954 5788999999999999876432 00011 01134456677777 5556666
Q ss_pred c-CCeEEEEECCCCcE-EEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc----eEEEEcCCCCCEEEEEE
Q 003871 523 S-GGKISIFSLETFQT-LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAY 594 (790)
Q Consensus 523 s-dg~I~vwd~~~~~~-~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~----~~~~l~~h~~~v~~l~~ 594 (790)
. =|...+||.+++.. ...+.-|...|++++++|.. ++|+|+.|++++|||++.-. +.-....|...|++..|
T Consensus 298 ~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyF 377 (498)
T KOG4328|consen 298 DNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYF 377 (498)
T ss_pred ecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEE
Confidence 6 47999999988654 56667788899999999998 99999999999999997532 12233459999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCC-CceeeceeeeeeccCCCC-CCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCcee
Q 003871 595 SLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVP-ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT 671 (790)
Q Consensus 595 spdg~~l~s~s~dg~I~vwd~~~-~~~~~~~~l~~~~~~~~~-~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~ 671 (790)
||++-.|++.+.|..|+|||..- +.. ..++.++...+.. .--.....+|.|+..+++++ .-..|-|+|-..++.+
T Consensus 378 SPs~gtl~TT~~D~~IRv~dss~~sa~--~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v 455 (498)
T KOG4328|consen 378 SPSGGTLLTTCQDNEIRVFDSSCISAK--DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMV 455 (498)
T ss_pred cCCCCceEeeccCCceEEeeccccccc--CCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEe
Confidence 99877799999999999999841 000 1122212211110 00123456899999999997 6777999999988888
Q ss_pred eeecCCCCCCCeEE-EEEecCCCEEEE-EEcCCeEEEEECCC
Q 003871 672 SQLVPDKMDLPITY-ATYSCDGKCIYV-SCKSGHVKVFDTST 711 (790)
Q Consensus 672 ~~~~~~~h~~~v~~-l~~s~dg~~l~s-gs~dg~i~vwd~~~ 711 (790)
..+..+. ...|.+ ..|+|-+..+++ |+..|.|+||--+.
T Consensus 456 ~el~~P~-~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 456 CELHDPE-SSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred eeccCcc-ccccccceeecccccceeccCCccceEEEEecCC
Confidence 8775432 223444 579998884554 45568899886543
No 157
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.9e-17 Score=153.45 Aligned_cols=286 Identities=13% Similarity=0.159 Sum_probs=200.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCce--eeeecccCCCCCCeEEEEecCcEEE
Q 003871 443 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALRGSHLF 520 (790)
Q Consensus 443 ~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~V~~l~~s~~~l~ 520 (790)
.|.+-+|+|.+++|++|+.+|.|-+..+.+... +.. . ..|+ +.. ..+|+++|+.++|.+.+|+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s--~sa--------~--~~gk~~iv~---eqahdgpiy~~~f~d~~Ll 76 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS--GSA--------E--PPGKLKIVP---EQAHDGPIYYLAFHDDFLL 76 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc--ccc--------C--CCCCcceee---ccccCCCeeeeeeehhhee
Confidence 456668999999999999999999998875322 000 0 1111 111 2479999999999999999
Q ss_pred EecCCeEEEEECCCCcE------EEEEc-------CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCC
Q 003871 521 SASGGKISIFSLETFQT------LATFA-------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ 586 (790)
Q Consensus 521 s~sdg~I~vwd~~~~~~------~~~~~-------~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~ 586 (790)
+|+||.|+-|....... +.... ..-..|+++...|.. -++.++.|+.++.||+++|+....++||+
T Consensus 77 s~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 77 SGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred eccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 99999999997653211 11111 123468899999888 66666689999999999999999999999
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCC-CCCeEEEEEeCCCCEEEEEeCCcEEEEEC
Q 003871 587 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE-TTIVNHIQFHPDQIHLLSIHEGQIDVYEA 665 (790)
Q Consensus 587 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~-~~~v~~i~~sp~~~~l~~~~dg~I~iwd~ 665 (790)
+.|.+++--.....+.+|+.||++|+||.++++.......+.-+..-.|+ ...|.+++-+ ..++++|....+.+|.+
T Consensus 157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgGp~lslwhL 234 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGGPKLSLWHL 234 (325)
T ss_pred ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCCCceeEEec
Confidence 99999988555557899999999999999997654332222111111111 1456666654 55999988888999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCC
Q 003871 666 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 745 (790)
Q Consensus 666 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 745 (790)
+..++...|.. ..++..+.|.. +.++++++.+.|.-|.+. |.+...... +|+ ..+ +.+|+..--
T Consensus 235 rsse~t~vfpi---pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~------~s~--~c~--s~s~~~~p~ 298 (325)
T KOG0649|consen 235 RSSESTCVFPI---PARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPV------EST--ACY--SASWQTSPI 298 (325)
T ss_pred cCCCceEEEec---ccceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccC------Ccc--cee--eecccCCce
Confidence 99999888865 56788888864 478888888999999875 333333221 221 233 444443113
Q ss_pred CEEEEEeCCCcEEEEe
Q 003871 746 NRIALGLTNGRVHVIE 761 (790)
Q Consensus 746 ~~las~s~Dg~i~iW~ 761 (790)
+++-.++..+.+.|+.
T Consensus 299 k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 299 KFISIAGFSNKLHILK 314 (325)
T ss_pred EEEEecccceeeeeee
Confidence 5666667777777763
No 158
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=1e-18 Score=182.21 Aligned_cols=266 Identities=13% Similarity=0.178 Sum_probs=206.7
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
..++|- |||..+ +.+.. ..+.+||.++ .+..++++ +|.+.|.+++|+.||+.+++|+.|..
T Consensus 16 ~d~afk-------PDGsqL----~lAAg-~rlliyD~nd---G~llqtLK----gHKDtVycVAys~dGkrFASG~aDK~ 76 (1081)
T KOG1538|consen 16 NDIAFK-------PDGTQL----ILAAG-SRLLVYDTSD---GTLLQPLK----GHKDTVYCVAYAKDGKRFASGSADKS 76 (1081)
T ss_pred heeEEC-------CCCceE----EEecC-CEEEEEeCCC---cccccccc----cccceEEEEEEccCCceeccCCCcee
Confidence 899998 999988 55433 6799999985 56666655 89999999999999999999999999
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEecCCeEEEEECCCCcEEEEEc
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFA 542 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~ 542 (790)
|.+|+.+-.. .+.. .|++.|.|+.|+ .+.+++++=...-+|..+..... +.+
T Consensus 77 VI~W~~klEG--------------------~LkY-----SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~-K~k 130 (1081)
T KOG1538|consen 77 VIIWTSKLEG--------------------ILKY-----SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS-KHK 130 (1081)
T ss_pred EEEecccccc--------------------eeee-----ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH-hhh
Confidence 9999755321 1222 699999999999 88999999555668887643322 221
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEc---CCCCCEEEEEEeCCC-----CEEEEEeCCCcEEEE
Q 003871 543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSL-----NVLVSSGADAQLCVW 613 (790)
Q Consensus 543 ~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~---~h~~~v~~l~~spdg-----~~l~s~s~dg~I~vw 613 (790)
....+.+++|..|| +++.|-.+|+|.+-+- +|+....+. |...+|.+++|+|.. ..+++.....++.++
T Consensus 131 -ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy 208 (1081)
T KOG1538|consen 131 -SSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFY 208 (1081)
T ss_pred -hheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence 34568899999999 9999999999999874 455443443 367899999999953 468888888889888
Q ss_pred ECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC
Q 003871 614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 692 (790)
Q Consensus 614 d~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg 692 (790)
.+.+...-+.+.+. -...|+.+.|+|.++..| .|+.+++|-- .|-.+.++- .....|+.++..|++
T Consensus 209 ~LsG~~Igk~r~L~----------FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg--~~D~WIWtV~~~PNs 275 (1081)
T KOG1538|consen 209 QLSGKQIGKDRALN----------FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVG--EQDSWIWTVQAKPNS 275 (1081)
T ss_pred EecceeecccccCC----------CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecc--ccceeEEEEEEccCC
Confidence 88762211122222 346789999999999995 8999999965 466666653 257899999999999
Q ss_pred CEEEEEEcCCeEEEEECC
Q 003871 693 KCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 693 ~~l~sgs~dg~i~vwd~~ 710 (790)
++++.|+.||+|..|++.
T Consensus 276 Q~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 276 QYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ceEEEEEccCeeehhhhH
Confidence 999999999999999864
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.1e-19 Score=197.72 Aligned_cols=243 Identities=16% Similarity=0.235 Sum_probs=186.1
Q ss_pred CCCCCCCCCCCCCCCCCC----CcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCC-EEEEE
Q 003871 385 DSSCFNDNNQSRESTSLP----DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVAL 459 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~----la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~-~l~s~ 459 (790)
+.++|. +-|.. + |.|..||.|.+||............+. ....|.+.|..+.|++.+. .||+|
T Consensus 68 ~kL~W~-------~~g~~~~GlI----aGG~edG~I~ly~p~~~~~~~~~~~la-~~~~h~G~V~gLDfN~~q~nlLASG 135 (1049)
T KOG0307|consen 68 NKLAWG-------SYGSHSHGLI----AGGLEDGNIVLYDPASIIANASEEVLA-TKSKHTGPVLGLDFNPFQGNLLASG 135 (1049)
T ss_pred eeeeec-------ccCCCcccee----eccccCCceEEecchhhccCcchHHHh-hhcccCCceeeeeccccCCceeecc
Confidence 678887 44544 6 999999999999997531122211110 1136999999999999765 99999
Q ss_pred eCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCC
Q 003871 460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF 535 (790)
Q Consensus 460 ~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~ 535 (790)
++||.|.|||+..... ..-.. .....+.|.+++|+ .+.|++++ +|.+.|||++..
T Consensus 136 a~~geI~iWDlnn~~t------------------P~~~~---~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 136 ADDGEILIWDLNKPET------------------PFTPG---SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred CCCCcEEEeccCCcCC------------------CCCCC---CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 9999999999987433 00000 11357889999999 77889998 789999999988
Q ss_pred cEEEEEcCCCC--CeEEEEEcCCC--eEEEEeCCC---cEEEEeCCCC-ceEEEEcCCCCCEEEEEEeCC-CCEEEEEeC
Q 003871 536 QTLATFANPPP--IATYFILLPQD--LFAFGFDDS---SILVHCPCTK-KTKAKLKGHQNRITCLAYSLS-LNVLVSSGA 606 (790)
Q Consensus 536 ~~~~~~~~~~~--~v~~l~~s~~g--~l~sgs~dg---~I~iwd~~~~-~~~~~l~~h~~~v~~l~~spd-g~~l~s~s~ 606 (790)
+.+-.+..+.. .+..++|+|++ .+++++.|. .|.+||++.- .+++.+++|...|.++.|++. ..++++++.
T Consensus 195 ~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk 274 (1049)
T KOG0307|consen 195 KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK 274 (1049)
T ss_pred CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC
Confidence 77777765443 47899999999 777777665 7999998754 567788999999999999995 488999999
Q ss_pred CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCC-EEEE-EeCCcEEEEECCCCc
Q 003871 607 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPTLN 669 (790)
Q Consensus 607 dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~-~l~~-~~dg~I~iwd~~~~~ 669 (790)
|+.|.+|+.++++... .++... .++..+.|+|... .+++ +-||.|.||.+..+.
T Consensus 275 D~~ii~wN~~tgEvl~-----~~p~~~----nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 275 DNRIICWNPNTGEVLG-----ELPAQG----NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCeeEecCCCceEee-----ecCCCC----cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999976443 344432 5899999999876 4555 589999999987654
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=2.7e-16 Score=173.35 Aligned_cols=361 Identities=21% Similarity=0.257 Sum_probs=263.2
Q ss_pred hhhccCCCccccccccCCC-------CCCCcceeeeccCCCcc-cccccccCCCCCCCCCCC-CCCCCCCCCCCCCC-CC
Q 003871 322 LIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNL-RYASSILTDKPNQEGRPL-DASSGDDSNDSSCF-ND 391 (790)
Q Consensus 322 ~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~-~~~~~~~~~~~~l~~h~~-~v~~~~~~i~~~~f-s~ 391 (790)
.+..|...+. ++.|.+. +.|+.+. +|+...+. .+ ..+.++.. .+ ..+.+ +
T Consensus 60 ~~~~~~~~i~--~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~--------~~~~~~~~~~~-------~~~~~~~- 119 (466)
T COG2319 60 LLRGHEDSIT--SIAFSPDGELLLSGSSDGTIK--LWDLDNGEKLI--------KSLEGLHDSSV-------SKLALSS- 119 (466)
T ss_pred eeeeccceEE--EEEECCCCcEEEEecCCCcEE--EEEcCCCceeE--------EEEeccCCCce-------eeEEEEC-
Confidence 4556777766 8888887 5689999 99988776 43 45555332 44 44554 5
Q ss_pred CCCCCCCCCC-CCccccee-ccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC-CCcEEEE
Q 003871 392 NNQSRESTSL-PDADSAVC-AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLW 468 (790)
Q Consensus 392 ~~~~~s~dg~-~la~~~at-~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~-dg~i~vw 468 (790)
+++. .+ +. +..|+.+.+|+... .......+ .+|...|..++|+|++.++++++. |+.+++|
T Consensus 120 ------~~~~~~~----~~~~~~d~~~~~~~~~~--~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (466)
T COG2319 120 ------PDGNSIL----LASSSLDGTVKLWDLST--PGKLIRTL----EGHSESVTSLAFSPDGKLLASGSSLDGTIKLW 183 (466)
T ss_pred ------CCcceEE----eccCCCCccEEEEEecC--CCeEEEEE----ecCcccEEEEEECCCCCEEEecCCCCCceEEE
Confidence 7777 44 44 44499999999962 01222222 268999999999999998888886 9999999
Q ss_pred ecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--Cc-EEEEec-CCeEEEEECCCCcEEE-EEcC
Q 003871 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLA-TFAN 543 (790)
Q Consensus 469 ~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~-~l~s~s-dg~I~vwd~~~~~~~~-~~~~ 543 (790)
+...... ... ..+|...|.+++|+ +. .+++++ |+.|++||...+.... .+.+
T Consensus 184 ~~~~~~~---------------------~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~ 240 (466)
T COG2319 184 DLRTGKP---------------------LST--LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240 (466)
T ss_pred EcCCCce---------------------EEe--eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC
Confidence 9875221 111 12488999999999 55 455535 8999999998888887 6788
Q ss_pred CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Q 003871 544 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (790)
Q Consensus 544 ~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~-~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 621 (790)
|.... ...|+|++ .+++++.|+.+++|+...... ...+.+|...+.++.|+|++..+++++.|+.+.+||..+....
T Consensus 241 ~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 319 (466)
T COG2319 241 HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319 (466)
T ss_pred CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceE
Confidence 87775 44899999 888999999999999987654 4444678899999999998888888999999999998875432
Q ss_pred eceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEE-E
Q 003871 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV-S 698 (790)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-g 698 (790)
.... ...|. ..+..+.|.+++..++.+ .|+.+.+|+............ ...+..+.+++ ...+.. +
T Consensus 320 ~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~ 388 (466)
T COG2319 320 SSLT----LKGHE---GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG---HSNVLSVSFSP-DGRVVSSG 388 (466)
T ss_pred EEee----ecccC---CceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC---CceEEEEEECC-CCCEEEEe
Confidence 2211 12444 468889994332455553 778899999987773333321 22288999998 544444 6
Q ss_pred EcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 699 CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 699 s~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
..++.+.+|+............. . ..+. ...+.+ ++..+++++.++.+++|+..+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 389 STDGTVRLWDLSTGSLLRNLDGH-------T-SRVT--SLDFSP-DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cCCCceEEEecccCeeeeeccCC-------C-CcEE--EEEECC-CCcEEEEecCCCcEEEEeccC
Confidence 88999999999998877665421 0 3444 788888 889999999999999999988
No 161
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=9.2e-19 Score=175.65 Aligned_cols=248 Identities=11% Similarity=0.101 Sum_probs=180.2
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCc-----cccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEec
Q 003871 452 SGDFLVALTQTATHKLWKWQSNKQ-----SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS 523 (790)
Q Consensus 452 dg~~l~s~~~dg~i~vw~~~~~~~-----~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s 523 (790)
.|+|+|.|+.|..|.|||+.-... ..|...... ....+ .+.....+|+..|.+++|+ .+.||+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~-----~~k~~--k~~~~~~gHTdavl~Ls~n~~~~nVLaSgs 263 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKK-----KKKKG--KRSNSASGHTDAVLALSWNRNFRNVLASGS 263 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhh-----hhhhc--ccccccccchHHHHHHHhccccceeEEecC
Confidence 378999999999999999874332 111110000 00000 0111223799999999999 78899999
Q ss_pred -CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc-eEEEEcCCCCCEEEEEEeCCC-
Q 003871 524 -GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYSLSL- 598 (790)
Q Consensus 524 -dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~-~~~~l~~h~~~v~~l~~spdg- 598 (790)
|.+|++||+.++++..++..|...|.++.|+|.. .+++|+.|++|.+.|.+... .-..++ ..+.|-.++|.|..
T Consensus 264 aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se 342 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSE 342 (463)
T ss_pred CCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCc
Confidence 9999999999999999999999999999999998 99999999999999998422 222333 34679999999954
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE--EeCCcEEEEECCCCceeeeecC
Q 003871 599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVP 676 (790)
Q Consensus 599 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~--~~dg~I~iwd~~~~~~~~~~~~ 676 (790)
..++++..||+|+-+|++... .++. ....|. ++|.++++++.-..+.+ +.|+.|++|++...........
T Consensus 343 ~~f~~~tddG~v~~~D~R~~~----~~vw-t~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~ 414 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNPG----KPVW-TLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH 414 (463)
T ss_pred eeEEEecCCceEEeeecCCCC----Ccee-EEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc
Confidence 567788899999999999843 4555 333566 79999999987655554 5899999999875443222111
Q ss_pred CCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCCeEE
Q 003871 677 DKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLELR 715 (790)
Q Consensus 677 ~~h~~~v~~l~~s~dg~-~l~sgs~dg~i~vwd~~~~~~~ 715 (790)
.-.-+...|+++.|+-. .++.|+..+.++|||+.++..+
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 00123456677777654 5678888889999999887644
No 162
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=7.5e-18 Score=167.33 Aligned_cols=304 Identities=15% Similarity=0.137 Sum_probs=210.2
Q ss_pred CCCCCCCCCCCCCCCCC-CCcccceeccCCCceEeeeccccCCCCceeeeec--cCCCCCCceEEEEEcCCCCEEEEEeC
Q 003871 385 DSSCFNDNNQSRESTSL-PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLL--PDNSFGGRVVRLIYSHSGDFLVALTQ 461 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~-~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l--~~~~h~~~V~~l~~spdg~~l~s~~~ 461 (790)
.++.|. +++. .+ |||+.|..|+||.+......+....+.+ .-..|...|+++.|+|+|..|++|++
T Consensus 17 ~s~dfq-------~n~~~~l----aT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D 85 (434)
T KOG1009|consen 17 YSVDFQ-------KNSLNKL----ATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD 85 (434)
T ss_pred EEEEec-------cCcccce----ecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC
Confidence 677786 4454 77 9999999999999875433331111111 11469999999999999999999999
Q ss_pred CCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEE
Q 003871 462 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL 538 (790)
Q Consensus 462 dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~ 538 (790)
+|.+.+|....................| .......+|...|+.++|+ +.++++++ |..+++||+..|...
T Consensus 86 ~g~v~lWk~~~~~~~~~d~e~~~~ke~w-------~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 86 GGEVFLWKQGDVRIFDADTEADLNKEKW-------VVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL 158 (434)
T ss_pred CceEEEEEecCcCCccccchhhhCccce-------EEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE
Confidence 9999999876421100000111111111 1112234799999999999 88899999 999999999999999
Q ss_pred EEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEc--------C-----------CC----CCEEEEEE
Q 003871 539 ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--------G-----------HQ----NRITCLAY 594 (790)
Q Consensus 539 ~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~--------~-----------h~----~~v~~l~~ 594 (790)
..+..|...+..++|.|-+ ++++-+.|...+.+++...+.++... + |. .....++|
T Consensus 159 ~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 159 AILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred eeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 9999999999999999999 99999988877777665433222111 0 11 12345789
Q ss_pred eCCCCEEEEEeC----CCc-----EEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeC------------------
Q 003871 595 SLSLNVLVSSGA----DAQ-----LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP------------------ 647 (790)
Q Consensus 595 spdg~~l~s~s~----dg~-----I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp------------------ 647 (790)
+|||..+++.+. ++. .++|+-.. ..++...++... .++..+.|+|
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~----l~rP~~~lp~~~----k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKD----LKRPAARLPSPK----KPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeecccc----ccCceeecCCCC----cceEEEEeeeeEEEeccccccccccccc
Confidence 999999887542 222 23333221 112222233222 2455566655
Q ss_pred CCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 003871 648 DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR 715 (790)
Q Consensus 648 ~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~ 715 (790)
.+..+|++..+.|++||.++..++..... -|-..++.++|++||.+++..|.||...+-.++..++-
T Consensus 311 yrlvfaiAt~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 311 YRLVFAIATKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred cceEEEEeecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 22345557788999999998887766643 47899999999999999999999999988888876653
No 163
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=4.6e-18 Score=177.49 Aligned_cols=278 Identities=14% Similarity=0.130 Sum_probs=190.8
Q ss_pred ceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccccccccc
Q 003871 407 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES 486 (790)
Q Consensus 407 ~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~ 486 (790)
+|.+..||.|.++|.......-...++..+ ..|.+.|..++|-|....|++++.|.++++||+.....
T Consensus 67 LavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l----------- 134 (720)
T KOG0321|consen 67 LAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL----------- 134 (720)
T ss_pred EEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCCceeEEEccCCceeeeeeecccee-----------
Confidence 499999999999998642211011111111 26999999999999767899999999999999887544
Q ss_pred ccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCcE-------------------------
Q 003871 487 QLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT------------------------- 537 (790)
Q Consensus 487 ~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~------------------------- 537 (790)
.......+|...|.+++|. ...+++|+ ||.|.|||++-...
T Consensus 135 ----------~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 135 ----------VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred ----------ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 1110112799999999999 55678888 99999999853210
Q ss_pred --EEEEcCCCCCeEE---EEEcCCC-eEEEEeC-CCcEEEEeCCCCceEEE--------EcCC---CCCEEEEEEeCCCC
Q 003871 538 --LATFANPPPIATY---FILLPQD-LFAFGFD-DSSILVHCPCTKKTKAK--------LKGH---QNRITCLAYSLSLN 599 (790)
Q Consensus 538 --~~~~~~~~~~v~~---l~~s~~g-~l~sgs~-dg~I~iwd~~~~~~~~~--------l~~h---~~~v~~l~~spdg~ 599 (790)
+..-..+...|.+ +.+..|. .||+++. |+.|++||+++...... +..| .-.+.++.....|.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 0011123333443 4455667 8888877 99999999987643322 2223 23567777777788
Q ss_pred EEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCC
Q 003871 600 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK 678 (790)
Q Consensus 600 ~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~ 678 (790)
+|.+.+.|+.|++||+.+... .++. ...++... .....-..+||+.+++++ .|...++|.+.+.+.-..+.. +
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~---sP~~-~~sg~~~~-sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~-G 358 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSI---SPVA-EFSGKLNS-SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLL-G 358 (720)
T ss_pred eEEEEecCCcEEEEeccccCc---Cchh-hccCcccc-eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhh-C
Confidence 888777799999999987331 2222 22222210 112223568999999996 899999999987665433332 4
Q ss_pred CCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCC
Q 003871 679 MDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 679 h~~~v~~l~~s~dg-~~l~sgs~dg~i~vwd~~~~ 712 (790)
|...|++++|.|.. .-++++++|..+++|++..+
T Consensus 359 ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 359 HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 78999999999742 34667799999999999754
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=1.8e-18 Score=169.81 Aligned_cols=206 Identities=13% Similarity=0.105 Sum_probs=160.2
Q ss_pred CCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCC----------------CceEEEEcCCCCCEEEEEEeCC-CCEEE
Q 003871 543 NPPPIATYFILLPQD---LFAFGFDDSSILVHCPCT----------------KKTKAKLKGHQNRITCLAYSLS-LNVLV 602 (790)
Q Consensus 543 ~~~~~v~~l~~s~~g---~l~sgs~dg~I~iwd~~~----------------~~~~~~l~~h~~~v~~l~~spd-g~~l~ 602 (790)
+|.+.++.+..++-+ +.++-+..|.|+|||+.. .+++.++.+|.+.=.+++|||- ...++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 456666666666654 667778889999999752 2467788899999999999992 23578
Q ss_pred EEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCC-EEEE-EeCCcEEEEECCCCceeeeecCCCCC
Q 003871 603 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPTLNHTSQLVPDKMD 680 (790)
Q Consensus 603 s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~-~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~ 680 (790)
+|.--+.|++|...+|.-.. -+.-..+|. ..|-.++|||... .|++ +.||+|+|||++.+.....+....|.
T Consensus 229 sGDc~~~I~lw~~~~g~W~v---d~~Pf~gH~---~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKV---DQRPFTGHT---KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred cCccccceEeeeeccCceee---cCccccccc---cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 88888899999998864211 111233566 7999999999754 4555 48999999999988443333335688
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCC---CeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcE
Q 003871 681 LPITYATYSCDGKCIYVSCKSGHVKVFDTST---LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV 757 (790)
Q Consensus 681 ~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~---~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i 757 (790)
..|+.+.|+.+..+|++|+.||+++|||++. ++++..|. +|..+|+ ++.|+|.+...++++|.|..|
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk--------~Hk~pIt--sieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK--------YHKAPIT--SIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE--------eccCCee--EEEeccccCceEEeccCCCcE
Confidence 9999999999888999999999999999875 56677776 3467888 999999888899999999999
Q ss_pred EEEecCC
Q 003871 758 HVIEPLE 764 (790)
Q Consensus 758 ~iW~~~~ 764 (790)
.|||+.-
T Consensus 373 tiWDlsv 379 (440)
T KOG0302|consen 373 TIWDLSV 379 (440)
T ss_pred EEEEeec
Confidence 9999864
No 165
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.5e-16 Score=173.03 Aligned_cols=396 Identities=13% Similarity=0.063 Sum_probs=254.2
Q ss_pred ccccCCC------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCccc
Q 003871 334 CINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTS-LPDADS 406 (790)
Q Consensus 334 ~i~fspd------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg-~~la~~ 406 (790)
...||+| ..++.|+ |+...+|+|+ +.+.+|..++ .++.+. ++ +.. .++
T Consensus 21 ~avfSnD~k~l~~~~~~~V~--VyS~~Tg~~i--------~~l~~~~a~l-------~s~~~~-~~----~~~~~~~--- 75 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTGNFVK--VYSTATGECI--------TSLEDHTAPL-------TSVIVL-PS----SENANYL--- 75 (792)
T ss_pred ccccccCCcEEEEeeCCEEE--EEecchHhhh--------hhcccccCcc-------ceeeec-CC----CccceEE---
Confidence 5568888 6788999 9999999999 9999999999 888885 33 222 344
Q ss_pred ceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcC---CCCEEEEEeC-C------------CcEEEEec
Q 003871 407 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH---SGDFLVALTQ-T------------ATHKLWKW 470 (790)
Q Consensus 407 ~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~sp---dg~~l~s~~~-d------------g~i~vw~~ 470 (790)
.+++.||.|++||..+ ......+.. ..++..+.+.| +-...+..+. | ++++-+.+
T Consensus 76 -~~~sl~G~I~vwd~~~---~~Llkt~~~-----~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~ 146 (792)
T KOG1963|consen 76 -IVCSLDGTIRVWDWSD---GELLKTFDN-----NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVL 146 (792)
T ss_pred -EEEecCccEEEecCCC---cEEEEEEec-----CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEe
Confidence 8999999999999974 333333321 23333333322 0001111111 1 11111111
Q ss_pred CCCCc-----ccccc----------------ccccccccccCCCce--eeeecccCCCCCCeEEEEec--CcEEEEec-C
Q 003871 471 QSNKQ-----SLEEE----------------NVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR--GSHLFSAS-G 524 (790)
Q Consensus 471 ~~~~~-----~~g~~----------------~~~~~~~i~~~~~~~--~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-d 524 (790)
.+... ..+.. .......+|..+.+. .........|...+++.+++ +++++++. |
T Consensus 147 ~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~d 226 (792)
T KOG1963|consen 147 ATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSD 226 (792)
T ss_pred eeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccC
Confidence 11111 00000 011122455555532 22222233577789999999 88899988 9
Q ss_pred CeEEEEECCC----CcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCC
Q 003871 525 GKISIFSLET----FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 599 (790)
Q Consensus 525 g~I~vwd~~~----~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~ 599 (790)
|.|.+|.--. ......+.-|...|.+++|+++| +|++|+..|.+.+|.+.+++ .+-+..-.++|..+.++||+.
T Consensus 227 GrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~ 305 (792)
T KOG1963|consen 227 GRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSD 305 (792)
T ss_pred CcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCC
Confidence 9999996432 12334556688899999999999 99999999999999999987 444555678999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeeceeeeeeccC----CCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeee
Q 003871 600 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG----LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 674 (790)
Q Consensus 600 ~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~----~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~ 674 (790)
+.+....|..|.+....+... ...+..+... .....+-.+.++++|..+.++. +..|.|.+||+.+.+.+..+
T Consensus 306 ~~sl~~~DNqI~li~~~dl~~--k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~ 383 (792)
T KOG1963|consen 306 LYSLVLEDNQIHLIKASDLEI--KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKL 383 (792)
T ss_pred eEEEEecCceEEEEeccchhh--hhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeE
Confidence 999999999999988755221 1112211111 0001146678899995445554 79999999999887766554
Q ss_pred cCC---C------CCCCeEEEEEecCCCEEEEEEc--------C--CeEEEEECCCCeEEEEeccccccCCCCcccccce
Q 003871 675 VPD---K------MDLPITYATYSCDGKCIYVSCK--------S--GHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 735 (790)
Q Consensus 675 ~~~---~------h~~~v~~l~~s~dg~~l~sgs~--------d--g~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 735 (790)
... . +.-.++.++.+..|.+++|+-. | -.+++|.......-..+......|+| .. + +
T Consensus 384 ~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~--~~-~-v 459 (792)
T KOG1963|consen 384 QVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG--NA-F-V 459 (792)
T ss_pred EEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC--ce-e-E
Confidence 321 1 1235778888888999998642 3 35788987765544444433444433 22 2 2
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEec------CCCccccc
Q 003871 736 LVIAAHPLEPNRIALGLTNGRVHVIEP------LESEVEWG 770 (790)
Q Consensus 736 ~~v~~sp~d~~~las~s~Dg~i~iW~~------~~~~~~w~ 770 (790)
..+..+|....+.+++|.||.++||.+ ..+...|.
T Consensus 460 at~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~ 500 (792)
T KOG1963|consen 460 ATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWT 500 (792)
T ss_pred EEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceE
Confidence 244445533348999999999999999 44445563
No 166
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.7e-16 Score=172.60 Aligned_cols=401 Identities=10% Similarity=0.082 Sum_probs=259.8
Q ss_pred ccccCccccchhhhhhhhccCCCccccccccCCC----------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCC
Q 003871 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN----------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLD 376 (790)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd----------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~ 376 (790)
..|+|+...+|.+++.+++|...+. .+.+.|. +.||.|+ +||...+..+ +++..+...
T Consensus 37 ~~V~VyS~~Tg~~i~~l~~~~a~l~--s~~~~~~~~~~~~~~~~sl~G~I~--vwd~~~~~Ll--------kt~~~~~~v 104 (792)
T KOG1963|consen 37 NFVKVYSTATGECITSLEDHTAPLT--SVIVLPSSENANYLIVCSLDGTIR--VWDWSDGELL--------KTFDNNLPV 104 (792)
T ss_pred CEEEEEecchHhhhhhcccccCccc--eeeecCCCccceEEEEEecCccEE--EecCCCcEEE--------EEEecCCce
Confidence 6788999999999999999999988 8888876 7899999 9998888754 332221110
Q ss_pred C---------------CCC--CCC----------------------------------CCCCCCCCCCCCCCCCCCCCcc
Q 003871 377 A---------------SSG--DDS----------------------------------NDSSCFNDNNQSRESTSLPDAD 405 (790)
Q Consensus 377 v---------------~~~--~~~----------------------------------i~~~~fs~~~~~~s~dg~~la~ 405 (790)
. +.. +.. -.++.++ +.|.+
T Consensus 105 ~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~-------~~ge~--- 174 (792)
T KOG1963|consen 105 HALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN-------NSGEF--- 174 (792)
T ss_pred eEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc-------CCceE---
Confidence 0 000 000 0011111 11221
Q ss_pred cceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccc
Q 003871 406 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNME 485 (790)
Q Consensus 406 ~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~ 485 (790)
.....+..+.+|++.........+... ..|.-.+++.++||++++++++..||.|.+|.--.... .+
T Consensus 175 --~~i~~~~~~~~~~v~~~~~~~~~~~~~---~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~------~~-- 241 (792)
T KOG1963|consen 175 --KGIVHMCKIHIYFVPKHTKHTSSRDIT---VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD------DS-- 241 (792)
T ss_pred --EEEEEeeeEEEEEecccceeeccchhh---hhhcccceeEEeccccceEEEeccCCcEEEEecccccc------cc--
Confidence 112233556777776311000001111 23777799999999999999999999999997332100 00
Q ss_pred cccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEE
Q 003871 486 SQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAF 561 (790)
Q Consensus 486 ~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~s 561 (790)
.+..+.. =|...|.+++|+ |.+|.+|+ .|.+.+|.+++++ .+-+..-..+|..+.++||+ ..+.
T Consensus 242 ------~t~t~lH-----WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl 309 (792)
T KOG1963|consen 242 ------ETCTLLH-----WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSL 309 (792)
T ss_pred ------ccceEEE-----ecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEE
Confidence 1111111 388899999999 99999999 8999999999988 34445567889999999999 8888
Q ss_pred EeCCCcEEEEeCCCCceEEEEcC-----------CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeec
Q 003871 562 GFDDSSILVHCPCTKKTKAKLKG-----------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630 (790)
Q Consensus 562 gs~dg~I~iwd~~~~~~~~~l~~-----------h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~ 630 (790)
...|..|.+....+......+.| ..+-.+.+.++|..+.++..+..|.|.+||+.+.+.+....+- .
T Consensus 310 ~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~--~ 387 (792)
T KOG1963|consen 310 VLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVC--D 387 (792)
T ss_pred EecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEE--e
Confidence 88899999998765544333322 2344677899997788999999999999999885544222111 1
Q ss_pred cCCC----CCCCCeEEEEEeCCCCEEEEE---------eCC--cEEEEECCCCc---eeeeecCCCCCCCeEEEEEec-C
Q 003871 631 TGLV----PETTIVNHIQFHPDQIHLLSI---------HEG--QIDVYEAPTLN---HTSQLVPDKMDLPITYATYSC-D 691 (790)
Q Consensus 631 ~~~~----~~~~~v~~i~~sp~~~~l~~~---------~dg--~I~iwd~~~~~---~~~~~~~~~h~~~v~~l~~s~-d 691 (790)
..+. ...-.+++++.+..|.++++. .|| .+++|-..... .+.+.....|...+...+|.+ .
T Consensus 388 ~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~ 467 (792)
T KOG1963|consen 388 ENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPT 467 (792)
T ss_pred ecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCc
Confidence 1111 011357788888889999983 122 37888754322 222222234666666666553 3
Q ss_pred CC-EEEEEEcCCeEEEEECCCCeEE------EEec-cccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 692 GK-CIYVSCKSGHVKVFDTSTLELR------CQIN-LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 692 g~-~l~sgs~dg~i~vwd~~~~~~~------~~~~-~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
.. ..++++.||.+++|-+...+.+ -... .+.| +..++. +++|+. ||..|+ +|.|++|.+||..
T Consensus 468 rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-----~k~~i~--a~~fs~-dGslla-~s~~~~Itiwd~~ 538 (792)
T KOG1963|consen 468 RSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-----HKTPIT--ALCFSQ-DGSLLA-VSFDDTITIWDYD 538 (792)
T ss_pred ccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc-----ccCccc--chhhcC-CCcEEE-EecCCEEEEecCC
Confidence 33 7889999999999998432211 1111 1111 234555 899999 886555 5678899999998
Q ss_pred CC
Q 003871 764 ES 765 (790)
Q Consensus 764 ~~ 765 (790)
+.
T Consensus 539 ~~ 540 (792)
T KOG1963|consen 539 TK 540 (792)
T ss_pred Ch
Confidence 84
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=3.2e-18 Score=165.37 Aligned_cols=245 Identities=15% Similarity=0.156 Sum_probs=178.3
Q ss_pred CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeee
Q 003871 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLK 420 (790)
Q Consensus 341 ~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd 420 (790)
+.-|.|+ |.|+.++++. ..+.||...| +.+.|. |+...| +++||.|.+||+|+
T Consensus 112 G~~GvIr--Vid~~~~~~~--------~~~~ghG~sI-------Neik~~-------p~~~ql---vls~SkD~svRlwn 164 (385)
T KOG1034|consen 112 GYLGVIR--VIDVVSGQCS--------KNYRGHGGSI-------NEIKFH-------PDRPQL---VLSASKDHSVRLWN 164 (385)
T ss_pred cceeEEE--EEecchhhhc--------cceeccCccc-------hhhhcC-------CCCCcE---EEEecCCceEEEEe
Confidence 6678899 9999999998 9999999999 999998 766433 39999999999999
Q ss_pred ccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccccc-cccc----ccccCCCce
Q 003871 421 LQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV-NMES----QLYQPSSKL 495 (790)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~-~~~~----~i~~~~~~~ 495 (790)
+. +..|..+.-.-.||.+.|.++.|+++|.+++++|.|.++++|++...+....-... .+.+ +-+-...-.
T Consensus 165 I~----~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~ 240 (385)
T KOG1034|consen 165 IQ----TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH 240 (385)
T ss_pred cc----CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence 97 56776644333689999999999999999999999999999999854430000000 0000 000000000
Q ss_pred eeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEECC-CC-------------cEEEEEcCCCCCeEEEEEcCC--C-
Q 003871 496 VMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLE-TF-------------QTLATFANPPPIATYFILLPQ--D- 557 (790)
Q Consensus 496 ~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd~~-~~-------------~~~~~~~~~~~~v~~l~~s~~--g- 557 (790)
+..+....-|...|-|+.|-|+++++-+ ++.|..|... -+ ..+.++.-....|+-+.|+-| +
T Consensus 241 fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~ 320 (385)
T KOG1034|consen 241 FPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK 320 (385)
T ss_pred cccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH
Confidence 1111112248889999999999999988 8999999872 11 123344445566777766544 4
Q ss_pred eEEEEeCCCcEEEEeCCCCceE--EEEc--CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 003871 558 LFAFGFDDSSILVHCPCTKKTK--AKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616 (790)
Q Consensus 558 ~l~sgs~dg~I~iwd~~~~~~~--~~l~--~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 616 (790)
.||.|...|.|++||++..++. .++. .....|...+|+.||..|+...+|++|.-||..
T Consensus 321 ~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 321 MLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 8999999999999999876552 1221 123578999999999999999999999999864
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.3e-18 Score=193.85 Aligned_cols=274 Identities=16% Similarity=0.171 Sum_probs=203.4
Q ss_pred cCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCE----EEEEeCCCcEEEEecCCCCcccccccccccc
Q 003871 411 KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF----LVALTQTATHKLWKWQSNKQSLEEENVNMES 486 (790)
Q Consensus 411 s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~----l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~ 486 (790)
+.+.++-||.++........... ....-..+...++|.+.|.. |+.|..||.|.+||......
T Consensus 36 st~~slEifeld~~~~~~dlk~~--~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~----------- 102 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPV--GSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA----------- 102 (1049)
T ss_pred ccccccceeeecccCcccccccc--ccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc-----------
Confidence 34566777777532222111110 00123567889999998876 67777799999999765211
Q ss_pred ccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCcEEEEE--cCCCCCeEEEEEcCCC--e
Q 003871 487 QLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATF--ANPPPIATYFILLPQD--L 558 (790)
Q Consensus 487 ~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~--~~~~~~v~~l~~s~~g--~ 558 (790)
...-.++. ....|.+.|..+.|+ ++.+|+|+ +|.|.|||+.+.+.-..+ ......|.+++|+..- .
T Consensus 103 ----~~~~~~la--~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhI 176 (1049)
T KOG0307|consen 103 ----NASEEVLA--TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHI 176 (1049)
T ss_pred ----CcchHHHh--hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHH
Confidence 00000111 122699999999999 77999999 899999999875443333 1245679999999877 8
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEcCCCC--CEEEEEEeCCC-CEEEEEeCCC---cEEEEECCCCceeeceeeeeeccC
Q 003871 559 FAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSLSL-NVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTG 632 (790)
Q Consensus 559 l~sgs~dg~I~iwd~~~~~~~~~l~~h~~--~v~~l~~spdg-~~l~s~s~dg---~I~vwd~~~~~~~~~~~l~~~~~~ 632 (790)
|++|+.+|.+.|||++..+.+-.+..|.+ .+..++|+|+. ..+++++.|. .|.+||++.- ..+++ +..+
T Consensus 177 LAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----ssP~k-~~~~ 251 (1049)
T KOG0307|consen 177 LASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----SSPLK-ILEG 251 (1049)
T ss_pred hhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc----CCchh-hhcc
Confidence 99999999999999998888777766554 47799999975 4566666654 5999999862 24566 4567
Q ss_pred CCCCCCCeEEEEEeCCC-CEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEEC
Q 003871 633 LVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDT 709 (790)
Q Consensus 633 ~~~~~~~v~~i~~sp~~-~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~dg~i~vwd~ 709 (790)
|. ..|.++.|++.+ ++|++ |.|+.|.+|+.++++.+..+.. ....+..+.|+|... .+++++-||.|.||.+
T Consensus 252 H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 252 HQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred cc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcchhhhheeccceeeeee
Confidence 77 699999999977 66666 5999999999999999999865 478999999999765 7889999999999999
Q ss_pred CCCe
Q 003871 710 STLE 713 (790)
Q Consensus 710 ~~~~ 713 (790)
.++.
T Consensus 327 ~~~~ 330 (1049)
T KOG0307|consen 327 QGTD 330 (1049)
T ss_pred ecCC
Confidence 8754
No 169
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.2e-17 Score=173.07 Aligned_cols=234 Identities=15% Similarity=0.183 Sum_probs=185.6
Q ss_pred CCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCc
Q 003871 504 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKK 577 (790)
Q Consensus 504 ~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g---~l~sgs~dg~I~iwd~~~~~ 577 (790)
+|++.|.++... |.+|++|+ ||+|++|.+.||+|++++. ..+.|.|++|+|.+ .||++- +..+.+.+..-|.
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIVNPIFGD 475 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEeCccccc
Confidence 899999999999 99999999 8999999999999999987 45689999999998 444443 3335555432110
Q ss_pred -------------------------------------eEEEEcCCCCCEEEEEEeCCCCEEEEEeCC---CcEEEEECCC
Q 003871 578 -------------------------------------TKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVG 617 (790)
Q Consensus 578 -------------------------------------~~~~l~~h~~~v~~l~~spdg~~l~s~s~d---g~I~vwd~~~ 617 (790)
-+...-.|...|+.+.|+..|.||++...+ ..|.|.++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 011222377889999999999999987654 4688999886
Q ss_pred CceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEE
Q 003871 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 697 (790)
Q Consensus 618 ~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 697 (790)
...+ .+++ ..+ +.|.++.|+|...+|+++....|+|||+..+..++.+.. ....|..++.+|.|..|+.
T Consensus 556 ~~sQ--~PF~---ksk----G~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~t--g~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 556 RKSQ--SPFR---KSK----GLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLT--GSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred cccc--Cchh---hcC----CceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhc--CCeeeeeeeecCCCCeEEE
Confidence 4322 2222 112 589999999999999999999999999998888887765 3788999999999999999
Q ss_pred EEcCCeEEEEECCCC-eEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEe
Q 003871 698 SCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 761 (790)
Q Consensus 698 gs~dg~i~vwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~ 761 (790)
|+.|+.+..+|+.-+ +..+.+. ||...+. +|+||+ .-.++|+|+.||++.|+.
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr--------~H~~avr--~Va~H~-ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLR--------LHEKAVR--SVAFHK-RYPLFASGSDDGTVIVFH 678 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhh--------hhhhhhh--hhhhcc-ccceeeeecCCCcEEEEe
Confidence 999999999999865 3444443 4466777 999999 788999999999999885
No 170
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=1.9e-15 Score=166.65 Aligned_cols=330 Identities=22% Similarity=0.313 Sum_probs=246.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCC-ceeeeeccCCCCCCceEEEE
Q 003871 370 QEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS-ECRTLLLPDNSFGGRVVRLI 448 (790)
Q Consensus 370 l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~-~~~~~~l~~~~h~~~V~~l~ 448 (790)
+.+|...+ .++.|. +++..+ +.++.|+.+.+|+... .. ....+.. .+...+..+.
T Consensus 61 ~~~~~~~i-------~~~~~~-------~~~~~~----~~~~~d~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~ 116 (466)
T COG2319 61 LRGHEDSI-------TSIAFS-------PDGELL----LSGSSDGTIKLWDLDN---GEKLIKSLEG---LHDSSVSKLA 116 (466)
T ss_pred eeeccceE-------EEEEEC-------CCCcEE----EEecCCCcEEEEEcCC---CceeEEEEec---cCCCceeeEE
Confidence 45677777 888898 888888 9999999999999974 21 2333221 1224677777
Q ss_pred E-cCCCC-EEEEEeC-CCcEEEEecCC-CCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEe
Q 003871 449 Y-SHSGD-FLVALTQ-TATHKLWKWQS-NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 522 (790)
Q Consensus 449 ~-spdg~-~l~s~~~-dg~i~vw~~~~-~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~ 522 (790)
+ ++++. .++..+. |+.+.+|+... .. .... ...|...|.+++|+ +..++++
T Consensus 117 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------------------~~~~--~~~~~~~v~~~~~~~~~~~~~~~ 173 (466)
T COG2319 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGK---------------------LIRT--LEGHSESVTSLAFSPDGKLLASG 173 (466)
T ss_pred EECCCcceEEeccCCCCccEEEEEecCCCe---------------------EEEE--EecCcccEEEEEECCCCCEEEec
Confidence 7 88888 5555455 89999999774 11 1111 12688999999999 6677777
Q ss_pred c--CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCceEE-EEcCCCCCEEEEEEeCC
Q 003871 523 S--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-FDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLS 597 (790)
Q Consensus 523 s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg-s~dg~I~iwd~~~~~~~~-~l~~h~~~v~~l~~spd 597 (790)
+ ++.+++|+..++..+..+.+|...|.+++|+|++ .++++ +.|+.|++||...+.... .+.+|...+ ...|+|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~ 252 (466)
T COG2319 174 SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD 252 (466)
T ss_pred CCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCC
Confidence 6 8999999999988999999999999999999999 45444 999999999998888877 688888775 4489999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecC
Q 003871 598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVP 676 (790)
Q Consensus 598 g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~ 676 (790)
+..+++++.|+.+++||...... .+... .+|. ..+.++.|+|++..+++ +.|+.+.+||..+.........
T Consensus 253 ~~~~~~~~~d~~~~~~~~~~~~~----~~~~~-~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 324 (466)
T COG2319 253 GSLLASGSSDGTIRLWDLRSSSS----LLRTL-SGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL 324 (466)
T ss_pred CCEEEEecCCCcEEEeeecCCCc----EEEEE-ecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeee
Confidence 98999999999999999997442 22222 4454 68999999998888887 4678899999988776665542
Q ss_pred CCCCCCeEEEEEecCCCEEEEE-EcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEE-EeCC
Q 003871 677 DKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL-GLTN 754 (790)
Q Consensus 677 ~~h~~~v~~l~~s~dg~~l~sg-s~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las-~s~D 754 (790)
..|...+..+.|.+++..++.+ ..|+.+.+|+........... . ...+. .+.+++ + ..... ++.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~--~~~~~--~~~~~~-~-~~~~~~~~~~ 391 (466)
T COG2319 325 KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE-------G--HSNVL--SVSFSP-D-GRVVSSGSTD 391 (466)
T ss_pred cccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEec-------C--CceEE--EEEECC-C-CCEEEEecCC
Confidence 2356679999994343556555 688999999999887222221 1 11144 888888 7 55555 8899
Q ss_pred CcEEEEecCCCccc
Q 003871 755 GRVHVIEPLESEVE 768 (790)
Q Consensus 755 g~i~iW~~~~~~~~ 768 (790)
+.+.+|+.......
T Consensus 392 ~~~~~~~~~~~~~~ 405 (466)
T COG2319 392 GTVRLWDLSTGSLL 405 (466)
T ss_pred CceEEEecccCeee
Confidence 99999999887654
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=1e-16 Score=154.63 Aligned_cols=275 Identities=16% Similarity=0.158 Sum_probs=199.7
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccC---C------CCceeeeeccCCCCCCceEEEEEc-----
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN---E------PSECRTLLLPDNSFGGRVVRLIYS----- 450 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~---~------~~~~~~~~l~~~~h~~~V~~l~~s----- 450 (790)
..+.|| |||..+ .+-+.|..+++|++...- . ......+.++ ....|...+|-
T Consensus 53 kgckWS-------PDGSci----L~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~---eg~tvydy~wYs~M~s 118 (406)
T KOG2919|consen 53 KGCKWS-------PDGSCI----LSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ---EGETVYDYCWYSRMKS 118 (406)
T ss_pred ccceeC-------CCCceE----EeecccCeeeEEecChhhcccCCCCccccccceeEEec---cCCEEEEEEeeecccc
Confidence 467898 999999 999999999999984210 0 0011111211 24567777764
Q ss_pred --CCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCC---CeEEEEec--CcEEEEec
Q 003871 451 --HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD---SISCFALR--GSHLFSAS 523 (790)
Q Consensus 451 --pdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~V~~l~~s--~~~l~s~s 523 (790)
|+..++++.+.+.-|++||.-+++. .+++ +.| .|.. .-.+++|+ |.+|++|.
T Consensus 119 ~qP~t~l~a~ssr~~PIh~wdaftG~l-----raSy--~~y--------------dh~de~taAhsL~Fs~DGeqlfaGy 177 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQPIHLWDAFTGKL-----RASY--RAY--------------DHQDEYTAAHSLQFSPDGEQLFAGY 177 (406)
T ss_pred CCCccceeeeccccCceeeeecccccc-----ccch--hhh--------------hhHHhhhhheeEEecCCCCeEeecc
Confidence 6788889999999999999877544 1111 011 1222 34589999 99999999
Q ss_pred CCeEEEEEC-CCCcEEEEEc-------CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEE
Q 003871 524 GGKISIFSL-ETFQTLATFA-------NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 593 (790)
Q Consensus 524 dg~I~vwd~-~~~~~~~~~~-------~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~ 593 (790)
...|+++|+ +.|+....+. +..+-+.+++|+|.. .++.|+...++-||.-..+.++..+-+|.+.|+.+.
T Consensus 178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ 257 (406)
T ss_pred cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE
Confidence 999999999 4454332221 235567999999988 899999999999998888889999999999999999
Q ss_pred EeCCCCEEEEEeC-CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCC-Cce
Q 003871 594 YSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT-LNH 670 (790)
Q Consensus 594 ~spdg~~l~s~s~-dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~-~~~ 670 (790)
|.+||+.|.+|+. |..|.+||++..+ .++..+. .|......-.-....|++++|++| .||.|++||+.+ +..
T Consensus 258 ~~edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~-rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDDKILCWDIRYSR----DPVYALE-RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred eccCcCeecccccCCCeEEEEeehhcc----chhhhhh-hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence 9999999999876 7789999999733 3333222 222100122234557899999997 999999999987 665
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEEcC
Q 003871 671 TSQLVPDKMDLPITYATYSCDGKCIYVSCKS 701 (790)
Q Consensus 671 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d 701 (790)
+..+.. +...+..++++|--..+++++..
T Consensus 333 ~sv~~~--~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 VSVTGN--YSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccccc--ccccccceecCcccceeeeccCc
Confidence 655543 68889999999997777777654
No 172
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1.1e-17 Score=156.97 Aligned_cols=281 Identities=14% Similarity=0.074 Sum_probs=195.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
..|++|.+.+ +++.|. .+++ | .+|..-|.|++|++.+ ......+.+ .|...|+.+
T Consensus 8 fvLRp~~~~v-------~s~~fq-------a~~r-L----~sg~~~G~V~~w~lqt---~r~~~~~r~---~g~~~it~l 62 (323)
T KOG0322|consen 8 FVLRPHSSSV-------TSVLFQ-------ANER-L----MSGLSVGIVKMWVLQT---ERDLPLIRL---FGRLFITNL 62 (323)
T ss_pred eEeccccchh-------eehhhc-------cchh-h----hcccccceEEEEEeec---Cccchhhhh---hccceeece
Confidence 5567899998 999996 5555 6 7999999999999974 122222221 367889999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-C----------
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G---------- 516 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~---------- 516 (790)
.--|++. +.+-+.|+.+.+|++..... +. -|.-.++++.|. -
T Consensus 63 q~~p~d~-l~tqgRd~~L~lw~ia~s~~---------------------i~-----i~Si~~nslgFCrfSl~~~~k~~e 115 (323)
T KOG0322|consen 63 QSIPNDS-LDTQGRDPLLILWTIAYSAF---------------------IS-----IHSIVVNSLGFCRFSLVKKPKNSE 115 (323)
T ss_pred eecCCcc-hhhcCCCceEEEEEccCcce---------------------EE-----EeeeeccccccccceeccCCCcch
Confidence 9999854 88999999999999875332 00 122222233332 0
Q ss_pred cEEEEecCC--eEEEEECCCCcEEEEE----cCCCCCeEEEEEcCC-C---eEEEEeCCCcEEEEeCCCCce--------
Q 003871 517 SHLFSASGG--KISIFSLETFQTLATF----ANPPPIATYFILLPQ-D---LFAFGFDDSSILVHCPCTKKT-------- 578 (790)
Q Consensus 517 ~~l~s~sdg--~I~vwd~~~~~~~~~~----~~~~~~v~~l~~s~~-g---~l~sgs~dg~I~iwd~~~~~~-------- 578 (790)
..++.-+.| .+++-|......+... .+..+.+.|..+..+ + .+++|.++|.|.+||+.++..
T Consensus 116 qll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~ 195 (323)
T KOG0322|consen 116 QLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSS 195 (323)
T ss_pred hheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccc
Confidence 112221111 1222222211111111 123455667665433 3 778899999999999998833
Q ss_pred --EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC--ceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE
Q 003871 579 --KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW--KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (790)
Q Consensus 579 --~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~--~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~ 654 (790)
......|..+|.++.|.+.-..=++|+.+..+..|.+... .......+. + .+ -.|..+.+-||++.+|+
T Consensus 196 kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~-l--kn----pGv~gvrIRpD~KIlAT 268 (323)
T KOG0322|consen 196 KVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT-L--KN----PGVSGVRIRPDGKILAT 268 (323)
T ss_pred ccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE-e--cC----CCccceEEccCCcEEee
Confidence 3334568999999999886666678888889999988742 211111111 1 12 37889999999999999
Q ss_pred -EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 003871 655 -IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 655 -~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~ 709 (790)
|.|+.|+||+.++.+++..+.. |...|.+++|+|+...+|+++.|++|.+|++
T Consensus 269 AGWD~RiRVyswrtl~pLAVLky--Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 269 AGWDHRIRVYSWRTLNPLAVLKY--HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cccCCcEEEEEeccCCchhhhhh--hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 6999999999999999998865 7899999999999999999999999999986
No 173
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.9e-16 Score=146.83 Aligned_cols=280 Identities=16% Similarity=0.227 Sum_probs=191.3
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccC-----CCCceeeeeccCCCCCCceEEEEEcCCCCEEEEE
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN-----EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL 459 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~-----~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~ 459 (790)
..-+++ |.++++ +.|+.+|+|.+..++..- +.++... ++.++|.++|+.++|. ..+|++|
T Consensus 14 f~qa~s-------p~~~~l----~agn~~G~iav~sl~sl~s~sa~~~gk~~i--v~eqahdgpiy~~~f~--d~~Lls~ 78 (325)
T KOG0649|consen 14 FAQAIS-------PSKQYL----FAGNLFGDIAVLSLKSLDSGSAEPPGKLKI--VPEQAHDGPIYYLAFH--DDFLLSG 78 (325)
T ss_pred HHHhhC-------CcceEE----EEecCCCeEEEEEehhhhccccCCCCCcce--eeccccCCCeeeeeee--hhheeec
Confidence 566787 889999 999999999999986431 1222222 2336899999999999 3457776
Q ss_pred eCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEecCCeEEEEECCCCc
Q 003871 460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQ 536 (790)
Q Consensus 460 ~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~sdg~I~vwd~~~~~ 536 (790)
+. |.|+-|.+..... .....++|......... . -.-..|+++... +..+.+|+|+.+.-||+++|+
T Consensus 79 gd-G~V~gw~W~E~~e------s~~~K~lwe~~~P~~~~--~--~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~ 147 (325)
T KOG0649|consen 79 GD-GLVYGWEWNEEEE------SLATKRLWEVKIPMQVD--A--VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR 147 (325)
T ss_pred cC-ceEEEeeehhhhh------hccchhhhhhcCccccC--c--ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE
Confidence 65 9999998875433 01122344433221110 0 123456677666 777777789999999999999
Q ss_pred EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCC----------CCEEEEEEeCCCCEEEEEe
Q 003871 537 TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ----------NRITCLAYSLSLNVLVSSG 605 (790)
Q Consensus 537 ~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~----------~~v~~l~~spdg~~l~s~s 605 (790)
..+++++|++.|.+++--... .+++|+.||++++||.++++.++.+.... ..|-+++.+ ..++++|+
T Consensus 148 i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg 225 (325)
T KOG0649|consen 148 IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG 225 (325)
T ss_pred EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC
Confidence 999999999999999874445 99999999999999999999888774321 235566554 44777665
Q ss_pred CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEE
Q 003871 606 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITY 685 (790)
Q Consensus 606 ~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~ 685 (790)
...+.+|+++..+.....++. +.+..+.|..| ..++.|..+.|.-|.+. |..-...... ....++
T Consensus 226 -Gp~lslwhLrsse~t~vfpip----------a~v~~v~F~~d-~vl~~G~g~~v~~~~l~-Gvl~a~ip~~--s~~c~s 290 (325)
T KOG0649|consen 226 -GPKLSLWHLRSSESTCVFPIP----------ARVHLVDFVDD-CVLIGGEGNHVQSYTLN-GVLQANIPVE--STACYS 290 (325)
T ss_pred -CCceeEEeccCCCceEEEecc----------cceeEeeeecc-eEEEeccccceeeeeec-cEEEEeccCC--ccceee
Confidence 568999999997665555554 57888988755 23444566778888874 5544444332 334555
Q ss_pred EEEecC-CCEEEEEEcCCeEEEE
Q 003871 686 ATYSCD-GKCIYVSCKSGHVKVF 707 (790)
Q Consensus 686 l~~s~d-g~~l~sgs~dg~i~vw 707 (790)
..|+.. -++|-.++..+.+.|+
T Consensus 291 ~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 291 ASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ecccCCceEEEEecccceeeeee
Confidence 555533 3455555555666554
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=6.9e-17 Score=153.38 Aligned_cols=280 Identities=12% Similarity=0.110 Sum_probs=196.7
Q ss_pred CCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCC-------C
Q 003871 342 NNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSL-------E 414 (790)
Q Consensus 342 ~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d-------~ 414 (790)
.|+.|.+--+|...+.... +.|..|.+.| +.++-+ |-.+.+ ++|+-.+ .
T Consensus 38 ~dNqVhll~~d~e~s~l~s-------kvf~h~agEv-------w~las~-------P~d~~i---laT~yn~~s~s~vl~ 93 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLS-------KVFFHHAGEV-------WDLASS-------PFDQRI---LATVYNDTSDSGVLT 93 (370)
T ss_pred CcceeEEEEecCccchhhh-------hhhhcCCcce-------ehhhcC-------CCCCce---EEEEEeccCCCccee
Confidence 3666763345555554443 7788888998 898887 544443 2554332 3
Q ss_pred ceEeeeccccCCCCceeeeec---cCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccC
Q 003871 415 KSVNLKLQLINEPSECRTLLL---PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQP 491 (790)
Q Consensus 415 ~i~iwd~~~~~~~~~~~~~~l---~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~ 491 (790)
.+-||.+.+...+.....+.. ....+-+.|.|+.|.|++..+++.. |..|.+|+++.......
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~va------------- 159 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVA------------- 159 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchhe-------------
Confidence 478999875332322111111 1123456899999999999888776 78899999986543000
Q ss_pred CCceeeeecccCCCCCCeEEEEec----CcEEEEecCCeEEEEECCCCcEEEEEc-CCCCCeEEEEEcCCC--eEEEEeC
Q 003871 492 SSKLVMTNDIAADPKDSISCFALR----GSHLFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQD--LFAFGFD 564 (790)
Q Consensus 492 ~~~~~~~~~~~~~~~~~V~~l~~s----~~~l~s~sdg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~g--~l~sgs~ 564 (790)
.+.. ....++....++-+|+ ++.+++.+|+++..||+++.++...+. .|...|..+.|+|+- .|++|++
T Consensus 160 ---ev~s-s~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gD 235 (370)
T KOG1007|consen 160 ---EVLS-SESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGD 235 (370)
T ss_pred ---eecc-cccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCC
Confidence 0000 0011355667777888 889999999999999999887776664 788899999999998 9999999
Q ss_pred CCcEEEEeCCCC-ceEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCce-------------------eec
Q 003871 565 DSSILVHCPCTK-KTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKK-------------------LCS 623 (790)
Q Consensus 565 dg~I~iwd~~~~-~~~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~-------------------~~~ 623 (790)
||.|++||.+.- .++..+.+|+..|.++.|+| ..+++++|+.|..|.+|....-.. .+.
T Consensus 236 dgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~ 315 (370)
T KOG1007|consen 236 DGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV 315 (370)
T ss_pred CccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhc
Confidence 999999999864 56889999999999999999 457889999999999997654110 001
Q ss_pred eeeee----eccCCCCCCCCeEEEEEeCCCCEEEE--EeCCcEEEEECC
Q 003871 624 KFLHS----FQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAP 666 (790)
Q Consensus 624 ~~l~~----~~~~~~~~~~~v~~i~~sp~~~~l~~--~~dg~I~iwd~~ 666 (790)
++++. ....|. ..|.+++||.-..++++ +.||.+.|=.+.
T Consensus 316 kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 316 KPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccc---cceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12221 223344 79999999998888877 489998876553
No 175
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.5e-16 Score=155.07 Aligned_cols=312 Identities=11% Similarity=0.061 Sum_probs=214.9
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.+|.+.|.++.||.++++|++|+.|..+++|++...-. ....+.+.. ....|.+.|.|++|.
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~---------------~k~~KPI~~-~~~~H~SNIF~L~F~~~ 116 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV---------------RKTPKPIGV-MEHPHRSNIFSLEFDLE 116 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHh---------------hcCCCCcee-ccCccccceEEEEEccC
Confidence 36999999999999999999999999999999864211 111122221 122577999999999
Q ss_pred CcEEEEec-CCeEEEEECCCCcEEEEEcC--CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-eEE--EEcCCCCC
Q 003871 516 GSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKA--KLKGHQNR 588 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~--~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~-~~~--~l~~h~~~ 588 (790)
+.++++|. +++|...|+++.+.+..+.. ..+.|..+..+|.+ .+++.+.++.|.+||.+... ... ........
T Consensus 117 N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~ 196 (609)
T KOG4227|consen 117 NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKN 196 (609)
T ss_pred CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcc
Confidence 66788888 89999999999988887752 23589999999999 99999999999999998654 222 22334556
Q ss_pred EEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeee--eeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEE
Q 003871 589 ITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH--SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 664 (790)
Q Consensus 589 v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~--~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd 664 (790)
...+.|+| ...+|++.+..+-+-+||.+... .++. ....+-......-.++.|+|.|..+.+- ....-.+||
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~----~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQA----RPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD 272 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeecccc----chHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence 78889999 45678899999999999998632 1111 0011100000234678999999888874 444456788
Q ss_pred CCCCceeeeecCCCC------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE----------------Eecccc
Q 003871 665 APTLNHTSQLVPDKM------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC----------------QINLTA 722 (790)
Q Consensus 665 ~~~~~~~~~~~~~~h------~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~----------------~~~~~~ 722 (790)
+.+.++. .++..+. ...+.+++|--|- -+++|+.+-.|++|.+....... .+....
T Consensus 273 ~~S~R~~-V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~ 350 (609)
T KOG4227|consen 273 FISQRCF-VLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKEL 350 (609)
T ss_pred eecccce-eEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheeccee
Confidence 8764442 2222211 2346677887554 49999999999999875311100 011111
Q ss_pred ccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccccccCCCCCC
Q 003871 723 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTDS 777 (790)
Q Consensus 723 ~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~~~~~~~ 777 (790)
.+..|| ...++ .|.|+| ...+|++.|....++||..-. .-|....|.+.
T Consensus 351 ~VLrGH-RSv~N--QVRF~~-H~~~l~SSGVE~~~KlWS~~r--~P~~~D~~~E~ 399 (609)
T KOG4227|consen 351 TVLRGH-RSVPN--QVRFSQ-HNNLLVSSGVENSFKLWSDHR--LPWSYDLPFER 399 (609)
T ss_pred EEEecc-ccccc--ceeecC-CcceEeccchhhheecccccc--CCcccCCcccc
Confidence 223476 44556 999999 788999999999999997633 22665555444
No 176
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.9e-17 Score=167.94 Aligned_cols=296 Identities=14% Similarity=0.191 Sum_probs=217.0
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.+|.+.|..+.|+..|..|++++.|..|.+||+..+.. ... +..+|...|..-.|-
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~--------------------~l~--f~SGH~~NvfQaKFiP~ 196 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP--------------------KLS--FESGHCNNVFQAKFIPF 196 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCc--------------------ccc--cccccccchhhhhccCC
Confidence 36999999999999999999999999999999987554 111 223677666666665
Q ss_pred --CcEEEEec-CCeEEEEECCC-CcE--EEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEE---cC
Q 003871 516 --GSHLFSAS-GGKISIFSLET-FQT--LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL---KG 584 (790)
Q Consensus 516 --~~~l~s~s-dg~I~vwd~~~-~~~--~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l---~~ 584 (790)
...+++++ ||.+++=.+.. +.+ ...+..|.++|.-++.-|+. .|.+++.|+.+.-+|++++.+...+ +.
T Consensus 197 s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 197 SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred CCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeecc
Confidence 56677777 99999877643 332 23445789999999999998 8999999999999999887654333 22
Q ss_pred CCC---CEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceee-ceeeeeeccCCCC--CCCCeEEEEEeCCCCEEEEE-e
Q 003871 585 HQN---RITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLC-SKFLHSFQTGLVP--ETTIVNHIQFHPDQIHLLSI-H 656 (790)
Q Consensus 585 h~~---~v~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~-~~~l~~~~~~~~~--~~~~v~~i~~sp~~~~l~~~-~ 656 (790)
+.. ...+++.+|. ...+++|+.|..+++||.+.-.... ...+.++...|.. ..-.|++++|+.++.-|.++ .
T Consensus 277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 333 5678899994 4589999999999999987632210 1112212111110 11579999999777666665 7
Q ss_pred CCcEEEEECCC--C----------ceeee-ecCCCCCCCeEEEEE-ecCCCEEEEEEcCCeEEEEECCCCeEEEEecccc
Q 003871 657 EGQIDVYEAPT--L----------NHTSQ-LVPDKMDLPITYATY-SCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA 722 (790)
Q Consensus 657 dg~I~iwd~~~--~----------~~~~~-~~~~~h~~~v~~l~~-s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~ 722 (790)
|-.|+++.-.. | ..++. ++++.....|..+-| .|...|+++|+.-|.|.||+-.+++++..+.+.
T Consensus 357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD- 435 (559)
T KOG1334|consen 357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD- 435 (559)
T ss_pred ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc-
Confidence 88899996432 2 12222 555444556777765 589999999999999999999999988776632
Q ss_pred ccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 723 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 723 ~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
...|+ |+--|| .-..||+.|-|.-|+||.+.+.+
T Consensus 436 -------r~VVN--CLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 436 -------RHVVN--CLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred -------cceEe--ccCCCC-CCchhhccCCccceeeecCCccc
Confidence 22556 999999 78899999999999999996654
No 177
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=3.1e-15 Score=159.73 Aligned_cols=276 Identities=13% Similarity=0.129 Sum_probs=177.8
Q ss_pred ceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC-CCcEEEEecCCCCccccccccccc
Q 003871 407 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNME 485 (790)
Q Consensus 407 ~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~-dg~i~vw~~~~~~~~~g~~~~~~~ 485 (790)
+++...++.|.+|++.. .+....+... .+.+....++++|++++|++++. ++.|.+|++..... .
T Consensus 5 y~~~~~~~~I~~~~~~~---~g~l~~~~~~--~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~----l----- 70 (330)
T PRK11028 5 YIASPESQQIHVWNLNH---EGALTLLQVV--DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA----L----- 70 (330)
T ss_pred EEEcCCCCCEEEEEECC---CCceeeeeEE--ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc----e-----
Confidence 36667889999999963 2322111110 13456778899999999887755 78899998763111 0
Q ss_pred cccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec--CCeEEEEECCC-Cc---EEEEEcCCCCCeEEEEEcCCC
Q 003871 486 SQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQ---TLATFANPPPIATYFILLPQD 557 (790)
Q Consensus 486 ~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~~-~~---~~~~~~~~~~~v~~l~~s~~g 557 (790)
...... ........++++ ++++++++ ++.|.+|++++ +. .+..+. +.....+++++|+|
T Consensus 71 ---------~~~~~~---~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g 137 (330)
T PRK11028 71 ---------TFAAES---PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDN 137 (330)
T ss_pred ---------EEeeee---cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCC
Confidence 011100 122346688999 78888777 79999999964 32 223332 22345778899999
Q ss_pred -eE-EEEeCCCcEEEEeCCCCceEE-------EEcCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCC--Cceeecee
Q 003871 558 -LF-AFGFDDSSILVHCPCTKKTKA-------KLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCSKF 625 (790)
Q Consensus 558 -~l-~sgs~dg~I~iwd~~~~~~~~-------~l~~h~~~v~~l~~spdg~~l~s~s~-dg~I~vwd~~~--~~~~~~~~ 625 (790)
++ ++...++.|.+||+.+...+. ... .......++|+|||+++++++. +++|.+||++. ++......
T Consensus 138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred CEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence 55 555567899999997632221 111 1234678999999999988776 89999999973 33221122
Q ss_pred eeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEECCCCc----eeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 003871 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDGKCIYVSC 699 (790)
Q Consensus 626 l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~~~~----~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 699 (790)
+..++.... .......+.++|++++++++ .++.|.+|++.... .+..+.. ......++|+|||++|+++.
T Consensus 217 ~~~~p~~~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 217 LDMMPADFS-DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EecCCCcCC-CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEEEE
Confidence 221211111 00234468999999999986 57889999985432 2232222 23456789999999999877
Q ss_pred c-CCeEEEEECC--CCeE
Q 003871 700 K-SGHVKVFDTS--TLEL 714 (790)
Q Consensus 700 ~-dg~i~vwd~~--~~~~ 714 (790)
. +++|.+|+++ ++.+
T Consensus 293 ~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 293 QKSHHISVYEIDGETGLL 310 (330)
T ss_pred ccCCcEEEEEEcCCCCcE
Confidence 5 8999999875 4443
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.6e-16 Score=154.77 Aligned_cols=273 Identities=14% Similarity=0.151 Sum_probs=184.0
Q ss_pred CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec----CcEEEEec-CCeEE
Q 003871 454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKIS 528 (790)
Q Consensus 454 ~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s----~~~l~s~s-dg~I~ 528 (790)
..+|++-++|.|++||..++.. +... .++...+..+.|. .+.+.+|+ ||+|+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~---------------------l~~f--k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr 97 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL---------------------LEEF--KGPPATTNGVRFISCDSPHGVISCSSDGTVR 97 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh---------------------hhee--cCCCCcccceEEecCCCCCeeEEeccCCeEE
Confidence 4688888899999999877443 1111 1566777778877 46677777 99999
Q ss_pred EEECCCCcEEEEE--cCCC-CCeEEEEEcCCC-eEEEEeC----CCcEEEEeCCCCce-EEEE-cCCCCCEEEEEEeC-C
Q 003871 529 IFSLETFQTLATF--ANPP-PIATYFILLPQD-LFAFGFD----DSSILVHCPCTKKT-KAKL-KGHQNRITCLAYSL-S 597 (790)
Q Consensus 529 vwd~~~~~~~~~~--~~~~-~~v~~l~~s~~g-~l~sgs~----dg~I~iwd~~~~~~-~~~l-~~h~~~v~~l~~sp-d 597 (790)
+||+++......+ ..+. .+..+++..-.+ .+++|+. +-.|.+||++..+. +..+ ..|...|+++.|+| +
T Consensus 98 ~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~ 177 (376)
T KOG1188|consen 98 LWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD 177 (376)
T ss_pred EEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence 9999986555444 3444 456777776566 7777753 45799999997755 5554 55999999999999 6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCC--CEEEEEeCCcEEEEECCCCceeeeec
Q 003871 598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHTSQLV 675 (790)
Q Consensus 598 g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~--~~l~~~~dg~I~iwd~~~~~~~~~~~ 675 (790)
.++|++||.||-|.+||++.... ....+..+..+ ..|.++.|..++ +....++..+..+|+++.+.+...+.
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~E-eDaL~~viN~~-----sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNE-EDALLHVINHG-----SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred CCeEEeecccceEEeeecCCCcc-hhhHHHhhccc-----ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 78999999999999999986321 11122222222 579999999988 54444799999999999888655543
Q ss_pred CCCCC----------CCeEEEEEec-CCCEEEEEEc-CCeEEEEECC---CCeEEEEeccccccCCCCcccccceEEEEE
Q 003871 676 PDKMD----------LPITYATYSC-DGKCIYVSCK-SGHVKVFDTS---TLELRCQINLTAYAQPGTISLELYPLVIAA 740 (790)
Q Consensus 676 ~~~h~----------~~v~~l~~s~-dg~~l~sgs~-dg~i~vwd~~---~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 740 (790)
...-. ..+... .+| ++...+.++. -|...++-+. ++...... ..+.|+|...|+ ++.|
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~----a~l~g~~~eiVR--~i~~ 324 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEP----AILQGGHEEIVR--DILF 324 (376)
T ss_pred CccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCcc----ccccCCcHHHHH--HHhh
Confidence 22100 011111 223 3444554444 4555555433 33332221 122366677778 8888
Q ss_pred ecCCCCEEEEEeCCCcEEEEecC
Q 003871 741 HPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 741 sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
.. .+.++.|||+||.+.+|..+
T Consensus 325 ~~-~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 325 DV-KNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred hc-ccceeeccCCCceEEEEecC
Confidence 76 78999999999999999953
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=4.6e-16 Score=147.84 Aligned_cols=206 Identities=16% Similarity=0.142 Sum_probs=151.3
Q ss_pred CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEEEc-----CCCCCEEEEEEeC--CCCEEEEEeCCCcEEEEE
Q 003871 544 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLK-----GHQNRITCLAYSL--SLNVLVSSGADAQLCVWD 614 (790)
Q Consensus 544 ~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~-~~~l~-----~h~~~v~~l~~sp--dg~~l~s~s~dg~I~vwd 614 (790)
+-+.|.|+.|.|++ .+++-. |..|.+|++..+.. +..+. +|....++-+|+| ||+.+++.+ |+++..||
T Consensus 122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D 199 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWD 199 (370)
T ss_pred HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEE
Confidence 34578999999999 877765 88999999987755 33332 2456678889999 788887765 89999999
Q ss_pred CCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE--EeCCcEEEEECCCCc-eeeeecCCCCCCCeEEEEEecC
Q 003871 615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCD 691 (790)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~--~~dg~I~iwd~~~~~-~~~~~~~~~h~~~v~~l~~s~d 691 (790)
+++.. ....+...|. ..|..+.|+|+-.++++ |.||.|++||.+..+ ++.++. .|...|+++.|+|.
T Consensus 200 ~RT~~-----~~~sI~dAHg---q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~--~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 200 LRTMK-----KNNSIEDAHG---QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP--GHSHWVWAVRFNPE 269 (370)
T ss_pred ccchh-----hhcchhhhhc---ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC--CCceEEEEEEecCc
Confidence 99833 3333666676 68999999999876665 489999999998644 556664 47899999999984
Q ss_pred -CCEEEEEEcCCeEEEEECCCCeEE---------------------EEeccccccCCCCcccccceEEEEEecCCCCEEE
Q 003871 692 -GKCIYVSCKSGHVKVFDTSTLELR---------------------CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 749 (790)
Q Consensus 692 -g~~l~sgs~dg~i~vwd~~~~~~~---------------------~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~la 749 (790)
.++|++||.|..|.+|...+-.-. +.+.......-..|.+.|| +++|+..|.-.+|
T Consensus 270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY--~~aWSsadPWiFA 347 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVY--ALAWSSADPWIFA 347 (370)
T ss_pred cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceE--EEeeccCCCeeEE
Confidence 578889999999999976532100 0000000000012356788 9999998888899
Q ss_pred EEeCCCcEEEEecC
Q 003871 750 LGLTNGRVHVIEPL 763 (790)
Q Consensus 750 s~s~Dg~i~iW~~~ 763 (790)
+-|.||++.|=++.
T Consensus 348 SLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 348 SLSYDGRVIISSVP 361 (370)
T ss_pred EeccCceEEeecCC
Confidence 99999999886653
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=1.8e-16 Score=156.85 Aligned_cols=202 Identities=11% Similarity=0.116 Sum_probs=165.1
Q ss_pred CCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCC-------cEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEE
Q 003871 503 ADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSIL 569 (790)
Q Consensus 503 ~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~-------~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~ 569 (790)
.+|.++|..++|+ ++.||+|+ |.+|.+|.+..+ +.+..+.+|...|.-++|+|.. .|++++.|.+|.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence 3899999999999 78899999 899999998653 4567788999999999999998 889999999999
Q ss_pred EEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCC
Q 003871 570 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 649 (790)
Q Consensus 570 iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~ 649 (790)
+||+.+|+.+..+. |...|.++.|+.||.++++.+.|..|||||.++++..... .+|.. ..-..+.|-.+|
T Consensus 158 iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~------~~heG--~k~~Raifl~~g 228 (472)
T KOG0303|consen 158 IWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG------VAHEG--AKPARAIFLASG 228 (472)
T ss_pred EEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec------ccccC--CCcceeEEeccC
Confidence 99999999888888 9999999999999999999999999999999997654432 23332 345667788889
Q ss_pred CEEEEE----eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEE-EEEcCCeEEEEECCCCe
Q 003871 650 IHLLSI----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 650 ~~l~~~----~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~dg~i~vwd~~~~~ 713 (790)
..+.+| ++.++-+||..+.+....+..-..+..|.---|.+|.+.++ +|-.|+.|+-|++....
T Consensus 229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 866655 67889999987654332222222367788888999998877 55569999999998765
No 181
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=7.3e-16 Score=158.20 Aligned_cols=208 Identities=15% Similarity=0.203 Sum_probs=150.0
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.||++.|.++.|+.+|.+|++|++|-.+.|||.-..+. +. .+..+|...|.++.|.
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl---------------------lh-sI~TgHtaNIFsvKFvP~ 104 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL---------------------LH-SISTGHTANIFSVKFVPY 104 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcce---------------------ee-eeecccccceeEEeeecc
Confidence 48999999999999999999999999999998653221 11 1234899999999998
Q ss_pred --CcEEEEec-CCeEEEEECCC----------CcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceE-
Q 003871 516 --GSHLFSAS-GGKISIFSLET----------FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK- 579 (790)
Q Consensus 516 --~~~l~s~s-dg~I~vwd~~~----------~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~- 579 (790)
++.+++|. |..|+++|+.. ....+.+..|...|..++..|++ .+.+++.||+|+-+|++.....
T Consensus 105 tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~ 184 (758)
T KOG1310|consen 105 TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN 184 (758)
T ss_pred CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC
Confidence 66778887 99999999974 12344556788899999999999 8999999999999999863211
Q ss_pred ------EE---EcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCC--------Cceeec-----eeeeeeccCCCCC
Q 003871 580 ------AK---LKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVG--------WKKLCS-----KFLHSFQTGLVPE 636 (790)
Q Consensus 580 ------~~---l~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~--------~~~~~~-----~~l~~~~~~~~~~ 636 (790)
.. +.+.--...++..+| +..+|++|+.|-..++||.+. +..... ..++.+..+|...
T Consensus 185 p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 185 PDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred ccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 11 111123467899999 567899999999999999542 110000 0122122222210
Q ss_pred C--------CCeEEEEEeCCCCEEEEE-eCCcEEEEECCC
Q 003871 637 T--------TIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (790)
Q Consensus 637 ~--------~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~ 667 (790)
. ..++.++|+|+|..|+++ ....|+++|+..
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 0 125678999999999987 445699999864
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.7e-15 Score=166.53 Aligned_cols=294 Identities=16% Similarity=0.154 Sum_probs=200.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec----Cc
Q 003871 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GS 517 (790)
Q Consensus 442 ~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s----~~ 517 (790)
..-..+.|+|=...++++...-.|+|||++.+... ..+.........|+.+.+- ..
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l--------------------~~F~n~~~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL--------------------NGFDNGAFPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCcee--------------------ccccCCCCCCCccceeeeecccchh
Confidence 34567889998888999988889999999876541 1111111246678888887 45
Q ss_pred EEEEec-CCeEEEEECCC-----CcEEEEEcC-------CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEc
Q 003871 518 HLFSAS-GGKISIFSLET-----FQTLATFAN-------PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 583 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~~-----~~~~~~~~~-------~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~ 583 (790)
++++|+ ||.|+||+-.. .+.+..+.+ ..+.-.-+.|.... +|++++.-..|+|||......+..+.
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP 1204 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP 1204 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc
Confidence 677888 99999997432 223332221 11111346777666 77777778899999998877776664
Q ss_pred C-CCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCE-EEE-EeCCc
Q 003871 584 G-HQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH-LLS-IHEGQ 659 (790)
Q Consensus 584 ~-h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~-l~~-~~dg~ 659 (790)
. ....|+++.-+- .|+.+++|..||.|++||.+..... ..+. ....|.. ..+|..+.+.+.|-- |++ +.+|.
T Consensus 1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--s~v~-~~R~h~~-~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--SLVC-VYREHND-VEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred cCCCccceeecccccCCceEEEeecCCceEEeecccCCcc--ccce-eecccCC-cccceeEEeecCCCcceeeeccCCe
Confidence 3 344567665443 5799999999999999999874322 1222 3334441 023899999886643 666 59999
Q ss_pred EEEEECCCCceeeeecCCCC---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecc-ccccCCCCcccccce
Q 003871 660 IDVYEAPTLNHTSQLVPDKM---DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL-TAYAQPGTISLELYP 735 (790)
Q Consensus 660 I~iwd~~~~~~~~~~~~~~h---~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~-~~~~~~gh~~~~v~~ 735 (790)
|++||++.......+....| ++..+++..+++...+|+|+. +.|+||++...+ +..+.. ..|. |...+.+.
T Consensus 1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~--~q~~gs~s- 1355 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFM--GQRIGSVS- 1355 (1387)
T ss_pred EEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccc--cCcCCCcc-
Confidence 99999987422222211112 235999999999999999998 999999987544 333332 1221 22233444
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 736 LVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 736 ~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
+++||| ..-++|+|+.|.+|.||....++
T Consensus 1356 -cL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1356 -CLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred -eeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 999999 78889999999999999987654
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=2.2e-14 Score=153.20 Aligned_cols=272 Identities=11% Similarity=0.060 Sum_probs=172.7
Q ss_pred EEEE-eCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec--CCeEEEE
Q 003871 456 LVAL-TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIF 530 (790)
Q Consensus 456 l~s~-~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s--dg~I~vw 530 (790)
++++ ..++.|.+|++.+... ...+... ...+....++++ +++|++++ ++.|.+|
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~------------------l~~~~~~---~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~ 62 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGA------------------LTLLQVV---DVPGQVQPMVISPDKRHLYVGVRPEFRVLSY 62 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCc------------------eeeeeEE---ecCCCCccEEECCCCCEEEEEECCCCcEEEE
Confidence 4444 5589999999853211 0011111 133456678888 77777665 6899999
Q ss_pred ECC-CCcE--EEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCcEEEEeCCC-Cc---eEEEEcCCCCCEEEEEEeCCCCEE
Q 003871 531 SLE-TFQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCT-KK---TKAKLKGHQNRITCLAYSLSLNVL 601 (790)
Q Consensus 531 d~~-~~~~--~~~~~~~~~~v~~l~~s~~g-~l~sgs-~dg~I~iwd~~~-~~---~~~~l~~h~~~v~~l~~spdg~~l 601 (790)
++. +++. ..... .......++++|++ .+++++ .++.|.+|++.+ +. .+..+. +.....+++++|+++++
T Consensus 63 ~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l 140 (330)
T PRK11028 63 RIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTL 140 (330)
T ss_pred EECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEE
Confidence 996 3432 22222 23356789999999 666665 488999999964 32 233333 22346778999999988
Q ss_pred EEE-eCCCcEEEEECCCCceeec---eeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEECCC--Cc--ee
Q 003871 602 VSS-GADAQLCVWDAVGWKKLCS---KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT--LN--HT 671 (790)
Q Consensus 602 ~s~-s~dg~I~vwd~~~~~~~~~---~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~~--~~--~~ 671 (790)
+++ ..++.|.+||+.+...... .... ...+ .....++|+|+|++++++ .++.|.+||+.. ++ .+
T Consensus 141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~-~~~g-----~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVT-TVEG-----AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred EEeeCCCCEEEEEEECCCCcccccCCCcee-cCCC-----CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence 654 4569999999986322111 1111 2222 346789999999999885 489999999973 32 23
Q ss_pred eeecCC----CCCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCC
Q 003871 672 SQLVPD----KMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 746 (790)
Q Consensus 672 ~~~~~~----~h~~~v~~l~~s~dg~~l~sgs~-dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 746 (790)
..+... .+......+.|+|+|++++++.. ++.|.+|++........+..+ .+.| .. +..++++| +|+
T Consensus 215 ~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~--~~~~---~~--p~~~~~~~-dg~ 286 (330)
T PRK11028 215 QTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGH--QPTE---TQ--PRGFNIDH-SGK 286 (330)
T ss_pred EEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE--Eecc---cc--CCceEECC-CCC
Confidence 333211 01223346889999999998864 689999999654311111111 0111 12 33789999 899
Q ss_pred EEEEEeC-CCcEEEEecCC
Q 003871 747 RIALGLT-NGRVHVIEPLE 764 (790)
Q Consensus 747 ~las~s~-Dg~i~iW~~~~ 764 (790)
+|++++. +++|.+|++..
T Consensus 287 ~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 287 YLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEEEEccCCcEEEEEEcC
Confidence 9887775 89999998753
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.8e-16 Score=152.07 Aligned_cols=276 Identities=8% Similarity=0.062 Sum_probs=183.9
Q ss_pred ceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcC--CCCEEEEEeCCCcEEEEecCCCCcccccccccc
Q 003871 407 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 484 (790)
Q Consensus 407 ~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~sp--dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~ 484 (790)
+|++-+.|.|++||... .+....++ +|...+..+.|.. ....+.+|+.||+|++||++....
T Consensus 43 vav~lSngsv~lyd~~t---g~~l~~fk----~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e--------- 106 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGT---GQLLEEFK----GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE--------- 106 (376)
T ss_pred EEEEecCCeEEEEeccc---hhhhheec----CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh---------
Confidence 38888899999999974 23333433 5778888888876 456788999999999999987443
Q ss_pred ccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-----CCeEEEEECCCCcE-EEEE-cCCCCCeEEEEEcC
Q 003871 485 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-----GGKISIFSLETFQT-LATF-ANPPPIATYFILLP 555 (790)
Q Consensus 485 ~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-----dg~I~vwd~~~~~~-~~~~-~~~~~~v~~l~~s~ 555 (790)
............+..|++.+ ++.+++|. +-.|.+||++..+. ++.+ ..|...|+++.|+|
T Consensus 107 -----------~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 107 -----------SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred -----------hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 11111111123566777776 66777765 35799999998765 5544 57999999999999
Q ss_pred CC--eEEEEeCCCcEEEEeCCCCce---EEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeceeeeee
Q 003871 556 QD--LFAFGFDDSSILVHCPCTKKT---KAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 629 (790)
Q Consensus 556 ~g--~l~sgs~dg~I~iwd~~~~~~---~~~l~~h~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~ 629 (790)
.. +|++||.||-|.+||+..... +...-.|...|..+.|..++ +.|.+-+...+..+|+++.+..........+
T Consensus 176 ~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~ 255 (376)
T KOG1188|consen 176 SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV 255 (376)
T ss_pred CCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc
Confidence 99 999999999999999975432 22223366779999998876 4588889999999999998653322211111
Q ss_pred ccCCCC---CCCCeEEEEEeCCCCEEEE-Ee-CCcEEEEEC---CCC---ceeeeecCCCCCCCeEEEEEecCCCEEEEE
Q 003871 630 QTGLVP---ETTIVNHIQFHPDQIHLLS-IH-EGQIDVYEA---PTL---NHTSQLVPDKMDLPITYATYSCDGKCIYVS 698 (790)
Q Consensus 630 ~~~~~~---~~~~v~~i~~sp~~~~l~~-~~-dg~I~iwd~---~~~---~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 698 (790)
..+-.. ....+.......+....+. +. -+...++-+ .++ +.+..+.+ +|..-|+++.|...+.++++|
T Consensus 256 ~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~TG 334 (376)
T KOG1188|consen 256 SADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYTG 334 (376)
T ss_pred hhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeecc
Confidence 100000 0011111111223334444 32 444444433 222 33344433 467788999999999999999
Q ss_pred EcCCeEEEEECC
Q 003871 699 CKSGHVKVFDTS 710 (790)
Q Consensus 699 s~dg~i~vwd~~ 710 (790)
|+||.+.+|...
T Consensus 335 GEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 335 GEDGLLQAWKVE 346 (376)
T ss_pred CCCceEEEEecC
Confidence 999999999853
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.4e-16 Score=164.71 Aligned_cols=246 Identities=14% Similarity=0.150 Sum_probs=184.9
Q ss_pred CCCCCeEEEEec--CcEEEEec-CCeEEEEECCC--------CcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEE
Q 003871 504 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET--------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVH 571 (790)
Q Consensus 504 ~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~--------~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iw 571 (790)
.|...|..++|. ...|++++ ||+|++|++.. -+++.+|.+|.++|.|+++.+++ .+++|+.||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 488888889998 77899999 99999999932 25678899999999999999999 99999999999999
Q ss_pred eCCCC----------ceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeE
Q 003871 572 CPCTK----------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 641 (790)
Q Consensus 572 d~~~~----------~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~ 641 (790)
++... .....+.||.+.|+.+++|+....|++++.||+++.|+...... ..+. .+..+ +...
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~---~~f~-~~~e~----g~Pl 443 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP---CTFG-EPKEH----GYPL 443 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc---cccC-Ccccc----CCcc
Confidence 65421 23456789999999999999988999999999999999877432 1111 22222 3455
Q ss_pred EEEEeCCC-CEEEEE-eCCcEEEEECCCCceeeeecCCC-----CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003871 642 HIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 714 (790)
Q Consensus 642 ~i~~sp~~-~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~-----h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~ 714 (790)
++.+-... ...+++ .-+.-.+++...+..+..+.... ....+..+.+.|.+.+.+++.+|+.|+++|..++++
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 66654332 112222 33444455555554444443211 124577888999999999999999999999999998
Q ss_pred EEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccc
Q 003871 715 RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 715 ~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
+.....+ ...+. ++++.| +|.+|++++.||.+++|.+....+.
T Consensus 524 l~s~~a~--------~~svt--slai~~-ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 524 LHSMVAH--------KDSVT--SLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred chheeec--------cceec--ceeecC-CCceEEeecCCceeehhhccchhee
Confidence 8776532 33455 999999 8999999999999999999776554
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.9e-15 Score=166.10 Aligned_cols=298 Identities=14% Similarity=0.094 Sum_probs=200.6
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcC--CCCEEEEEeCC
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQT 462 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~sp--dg~~l~s~~~d 462 (790)
..+.|+ |=...+ ++++....|++||.+. ......+.. +......|+.+.+-. |...+++++.|
T Consensus 1068 k~~~~h-------pf~p~i----~~ad~r~~i~vwd~e~---~~~l~~F~n-~~~~~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1068 KTLKFH-------PFEPQI----AAADDRERIRVWDWEK---GRLLNGFDN-GAFPDTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred ceeeec-------CCCcee----EEcCCcceEEEEeccc---CceeccccC-CCCCCCccceeeeecccchhheeeeccC
Confidence 455666 666677 8888889999999974 233233221 112346788888865 45689999999
Q ss_pred CcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEE
Q 003871 463 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA 539 (790)
Q Consensus 463 g~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~ 539 (790)
|.|+||+--.......+. ..-|..-++... +..+.=.-+.|. ..+|++++ -..|+|||.....+..
T Consensus 1133 GvIRIwk~y~~~~~~~eL-----VTaw~~Ls~~~~------~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPEL-----VTAWSSLSDQLP------GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred ceEEEecccccccCCcee-----EEeeccccccCc------cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 999999743211000000 011222222111 111111445676 44444444 6899999999888777
Q ss_pred EEcC-CCCCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCc---eEEEEcCCCCC--EEEEEEeCCCC-EEEEEeCCCcE
Q 003871 540 TFAN-PPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQNR--ITCLAYSLSLN-VLVSSGADAQL 610 (790)
Q Consensus 540 ~~~~-~~~~v~~l~~s~~-g-~l~sgs~dg~I~iwd~~~~~---~~~~l~~h~~~--v~~l~~spdg~-~l~s~s~dg~I 610 (790)
.+.. ....|+++.-+-. | .+++|..||.|++||.+... .+...+.|+.. |..+.+.+.|- .|++|+.||.|
T Consensus 1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence 7653 3445666654433 4 99999999999999987643 46677888887 99999998664 49999999999
Q ss_pred EEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCC-----CCCCCeEE
Q 003871 611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD-----KMDLPITY 685 (790)
Q Consensus 611 ~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~-----~h~~~v~~ 685 (790)
++||++...... .+. +..... ..+..+++..+++...+|+|..+.|+||++. |+.+..+... ...+.+.+
T Consensus 1282 ~~~DlR~~~~e~--~~~-iv~~~~-yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~sc 1356 (1387)
T KOG1517|consen 1282 QLLDLRMSSKET--FLT-IVAHWE-YGSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSC 1356 (1387)
T ss_pred EEEecccCcccc--cce-eeeccc-cCccceeeeeccCCCeeeecCcceEEEEecC-hhhhcccccCcccccCcCCCcce
Confidence 999999842221 122 211110 0035899999999999999866999999995 5555444321 12567899
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003871 686 ATYSCDGKCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 686 l~~s~dg~~l~sgs~dg~i~vwd~~~~~ 713 (790)
++|+|..-.+++|+.|.+|.||....++
T Consensus 1357 L~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1357 LAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eeecchhHhhhhccCCceEEEeecCCcC
Confidence 9999999999999999999999877654
No 187
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=4.1e-15 Score=141.68 Aligned_cols=284 Identities=12% Similarity=0.114 Sum_probs=195.5
Q ss_pred CCceEEEEEcC--C-CCEEEEEeC----CCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEE
Q 003871 441 GGRVVRLIYSH--S-GDFLVALTQ----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 513 (790)
Q Consensus 441 ~~~V~~l~~sp--d-g~~l~s~~~----dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~ 513 (790)
.-.+.++.||. + +-+|+.|+. .+.|.|-.+.. .++...... ...|.-+++.+.
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~-------------------~s~e~~~~a-~fd~~YP~tK~~ 103 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDE-------------------DSGELVEDA-NFDHPYPVTKLM 103 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEcc-------------------CCCceeccC-CCCCCCCccceE
Confidence 34577788883 3 335777765 45666665442 222222111 125888999999
Q ss_pred ec-C---c--EEEEecCCeEEEEECCC--CcEE--EEE-----cCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC
Q 003871 514 LR-G---S--HLFSASGGKISIFSLET--FQTL--ATF-----ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 576 (790)
Q Consensus 514 ~s-~---~--~l~s~sdg~I~vwd~~~--~~~~--~~~-----~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~ 576 (790)
|. . . -+++.++..+++|.+.. .+.. ..+ ..+..+++++.|+.-. ++.+.|-|-+..|||+++|
T Consensus 104 wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~ 183 (364)
T KOG0290|consen 104 WIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG 183 (364)
T ss_pred ecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec
Confidence 98 2 2 24555566899999873 2211 111 2356789999999877 8999999999999999987
Q ss_pred c---eEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCC-CE
Q 003871 577 K---TKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IH 651 (790)
Q Consensus 577 ~---~~~~l~~h~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~-~~ 651 (790)
. ....+-.|...|..++|...+ +.+|+.+.||.||+||++.-+ ....+..-+..+ .+...++|++.. ++
T Consensus 184 ~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le--HSTIIYE~p~~~----~pLlRLswnkqDpny 257 (364)
T KOG0290|consen 184 VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE--HSTIIYEDPSPS----TPLLRLSWNKQDPNY 257 (364)
T ss_pred cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc--cceEEecCCCCC----CcceeeccCcCCchH
Confidence 3 355677899999999999854 579999999999999999833 222333122212 478889998854 67
Q ss_pred EEE-E-eCCcEEEEECCCC-ceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecc-ccccCC
Q 003871 652 LLS-I-HEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINL-TAYAQP 726 (790)
Q Consensus 652 l~~-~-~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~dg~i~vwd~~~~~~~~~~~~-~~~~~~ 726 (790)
+|+ . ....|.|.|++.. .++..+. .|...|..++|.|.. ..|+++|.|..+.+||+..--......+ ..|..
T Consensus 258 mATf~~dS~~V~iLDiR~P~tpva~L~--~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a- 334 (364)
T KOG0290|consen 258 MATFAMDSNKVVILDIRVPCTPVARLR--NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA- 334 (364)
T ss_pred HhhhhcCCceEEEEEecCCCcceehhh--cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc-
Confidence 777 4 5567999999863 4566664 489999999999964 6899999999999999986432111111 11221
Q ss_pred CCcccccceEEEEEecCCCCEEEEEeCCCcEEE
Q 003871 727 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 759 (790)
Q Consensus 727 gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~i 759 (790)
.+.|+ .+.|+|..+..++.+.. +++.|
T Consensus 335 ---~~EVN--qi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 335 ---GGEVN--QIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ---cceee--eeeecccCCCEEEEEec-CeeeE
Confidence 34677 99999878889988864 44444
No 188
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=2.2e-17 Score=176.81 Aligned_cols=237 Identities=22% Similarity=0.274 Sum_probs=187.4
Q ss_pred CCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE
Q 003871 504 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 579 (790)
Q Consensus 504 ~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~ 579 (790)
+|...|+|+.|. |.++++|+ |..++||.++++.++....+|.+.|+.++.+.++ ++++++.|..|++|.+.++.++
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv 267 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV 267 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence 799999999999 99999999 7899999999999999999999999999999999 9999999999999999999999
Q ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC-ceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eC
Q 003871 580 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW-KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 657 (790)
Q Consensus 580 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~-~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d 657 (790)
..+.+|++.|++++|+|-. +.+.||++++||.+-. ......++. ...+ .-+.++.|..++..++++ .|
T Consensus 268 svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~-~~~~-----~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 268 SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLK-FTEK-----DLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred HHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCC-cccc-----cceeeeeccccccccccccCC
Confidence 9999999999999999964 7789999999999821 111111221 1111 467778888888888885 77
Q ss_pred CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceE
Q 003871 658 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 736 (790)
Q Consensus 658 g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 736 (790)
+.-..|....... +...+.-+.++.|. .+.+++-.+..+.+|++.+|.+.+.+. || .+.++
T Consensus 338 ~ea~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-------gh-sd~~y-- 399 (1113)
T KOG0644|consen 338 GEARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-------GH-SDEVY-- 399 (1113)
T ss_pred cccccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-------cc-cccee--
Confidence 8777776542111 11222222222222 567777788999999999999888776 55 55777
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEecCCCccc
Q 003871 737 VIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 737 ~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
.+.+||-+.....+++.||...|||+..|-+.
T Consensus 400 vLd~Hpfn~ri~msag~dgst~iwdi~eg~pi 431 (1113)
T KOG0644|consen 400 VLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI 431 (1113)
T ss_pred eeeecCCCcHhhhhccCCCceEeeecccCCcc
Confidence 88999966667789999999999999887544
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.8e-16 Score=162.57 Aligned_cols=275 Identities=11% Similarity=0.052 Sum_probs=187.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCC---ceeeeeccCCCCCCce
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRV 444 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~---~~~~~~l~~~~h~~~V 444 (790)
.++..|.+.+ +.++|. |-...+ ++|+.||++++|++...+... ....+++ .+|.++|
T Consensus 288 ~tl~s~~d~i-------r~l~~~-------~sep~l----it~sed~~lk~WnLqk~~~s~~~~~epi~tf--raH~gPV 347 (577)
T KOG0642|consen 288 FTLRSHDDCI-------RALAFH-------PSEPVL----ITASEDGTLKLWNLQKAKKSAEKDVEPILTF--RAHEGPV 347 (577)
T ss_pred eeeecchhhh-------hhhhcC-------CCCCeE----EEeccccchhhhhhcccCCccccceeeeEEE--ecccCce
Confidence 5666788888 899997 656677 999999999999994321111 1122222 4799999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecC
Q 003871 445 VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASG 524 (790)
Q Consensus 445 ~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sd 524 (790)
.|+++++++.++++||-||+|+.|++..+.- +.+
T Consensus 348 l~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d---------------p~d------------------------------- 381 (577)
T KOG0642|consen 348 LCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD---------------PDD------------------------------- 381 (577)
T ss_pred EEEEecCCceEEEeeccCceeeeeccCCCCC---------------ccc-------------------------------
Confidence 9999999999999999999999998763211 000
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcC--CCCCEEEEEEeCCC-CE
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLSL-NV 600 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~--h~~~v~~l~~spdg-~~ 600 (790)
.+|. ......+.||.+.|+.+++|+.. .|++++.||+++.|+.....+ ..+.. ..+...++.+.... .+
T Consensus 382 ----s~dp--~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~ 454 (577)
T KOG0642|consen 382 ----SYDP--SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAH 454 (577)
T ss_pred ----ccCc--chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHh
Confidence 1111 12234567899999999999999 999999999999999876555 33322 12334455554322 22
Q ss_pred EEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCC
Q 003871 601 LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKM 679 (790)
Q Consensus 601 l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h 679 (790)
.++...-+.-.+++...+.......-...+.... ...+..+.++|.+.+.+++ .|+.|+++|..++.++..... |
T Consensus 455 ~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~--~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a--~ 530 (577)
T KOG0642|consen 455 SLASFRFGYTSIDDMEVVSDLLIFESSASPGPRR--YPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVA--H 530 (577)
T ss_pred hhhhcccccccchhhhhhhheeeccccCCCcccc--cCccceEEecCCCCeeEecccCCceecccccccccchheee--c
Confidence 2222222222333333321111000010111100 0357788999999888886 899999999999999887754 6
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003871 680 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 680 ~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~ 719 (790)
...++++++.|+|-+|++|+.||.+++|.+.....+....
T Consensus 531 ~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 531 KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred cceecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 8899999999999999999999999999987765554433
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=8.1e-14 Score=137.53 Aligned_cols=235 Identities=13% Similarity=0.177 Sum_probs=176.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEE
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLF 520 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~ 520 (790)
...+..+.|+.+...|..|+.|| .++|+...... +.. .......|.-+-|+..++|
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k--------------------~~~---~~~~~~~IvEmLFSSSLva 60 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK--------------------CFS---KDTEGVSIVEMLFSSSLVA 60 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH--------------------hhc---ccCCCeEEEEeecccceeE
Confidence 45567777999998888888887 56666554211 100 0123445666677766776
Q ss_pred Eec-C--CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcC---CCCCEEEEEE
Q 003871 521 SAS-G--GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCLAY 594 (790)
Q Consensus 521 s~s-d--g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~---h~~~v~~l~~ 594 (790)
..+ + ..+++++++.+..+..+. ....|.++.++.+ .++++-.+. |+|||+++.+.++++.. +...+.++.+
T Consensus 61 iV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~-RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~ 137 (391)
T KOG2110|consen 61 IVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK-RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSP 137 (391)
T ss_pred EEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc-eEEEEEccc-EEEEecccceeehhhhccCCCccceEeecc
Confidence 666 3 579999999888877765 4566888888766 566665554 99999999988877743 5556777777
Q ss_pred eCCCCEEEEEe--CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCc-EEEEECCCCce
Q 003871 595 SLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ-IDVYEAPTLNH 670 (790)
Q Consensus 595 spdg~~l~s~s--~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~-I~iwd~~~~~~ 670 (790)
++.+.++|.-+ ..|.|.+||+.+ .+++..+. .|. +.+.+++|+|+|.+||++ ..|+ |+|+.+.+|+.
T Consensus 138 n~~n~ylAyp~s~t~GdV~l~d~~n-----l~~v~~I~-aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k 208 (391)
T KOG2110|consen 138 NNANCYLAYPGSTTSGDVVLFDTIN-----LQPVNTIN-AHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK 208 (391)
T ss_pred CCCCceEEecCCCCCceEEEEEccc-----ceeeeEEE-ecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccE
Confidence 77777888633 468899999988 34444333 676 799999999999999996 5555 89999999999
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 671 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 671 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
+..|..+.-...|.+++|+|++++|++.|..++|++|.++.
T Consensus 209 l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 209 LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 99997644456789999999999999999999999999864
No 191
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.69 E-value=3.1e-15 Score=148.10 Aligned_cols=206 Identities=17% Similarity=0.238 Sum_probs=159.6
Q ss_pred EEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-------ceEEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCc
Q 003871 540 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-------KTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQ 609 (790)
Q Consensus 540 ~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~-------~~~~~l~~h~~~v~~l~~spd-g~~l~s~s~dg~ 609 (790)
.+.+|.++|..++|+|-+ .||+||.|.+|.||++..+ +++..+.||...|--++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 346899999999999988 9999999999999998654 457788999999999999994 578999999999
Q ss_pred EEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEE
Q 003871 610 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY 688 (790)
Q Consensus 610 I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~ 688 (790)
|.+||+.+|+. .+. +. |. ..|.++.|+.||.++++ +.|..|+|||.++++.+..-..+. ...-..+-|
T Consensus 156 v~iWnv~tgea----li~-l~--hp---d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he-G~k~~Raif 224 (472)
T KOG0303|consen 156 VSIWNVGTGEA----LIT-LD--HP---DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE-GAKPARAIF 224 (472)
T ss_pred EEEEeccCCce----eee-cC--CC---CeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc-CCCcceeEE
Confidence 99999999762 222 32 55 79999999999999998 699999999999999988875432 455667778
Q ss_pred ecCCCEEEEEE---cCCeEEEEECCCCeE---EEEeccccccCCCCcccccceEEEEEecCCCCEEE-EEeCCCcEEEEe
Q 003871 689 SCDGKCIYVSC---KSGHVKVFDTSTLEL---RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGLTNGRVHVIE 761 (790)
Q Consensus 689 s~dg~~l~sgs---~dg~i~vwd~~~~~~---~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~la-s~s~Dg~i~iW~ 761 (790)
-.+|..+-||. .+..+-+||...-+. ...+. .+++ ++---|.| |.+++. +|-.|+.||.|.
T Consensus 225 l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD--------tSnG---vl~PFyD~-dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 225 LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD--------TSNG---VLLPFYDP-DTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred eccCceeeeccccccccceeccCcccccCcceeEEec--------cCCc---eEEeeecC-CCCEEEEEecCCcceEEEE
Confidence 88898555554 368899999776432 22222 1122 33455778 566665 455799999999
Q ss_pred cCCCccc
Q 003871 762 PLESEVE 768 (790)
Q Consensus 762 ~~~~~~~ 768 (790)
+.+..+-
T Consensus 293 it~d~P~ 299 (472)
T KOG0303|consen 293 ITNEPPF 299 (472)
T ss_pred ecCCCce
Confidence 9876643
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=3.1e-14 Score=140.45 Aligned_cols=237 Identities=16% Similarity=0.178 Sum_probs=172.9
Q ss_pred CCCeEEEEec--CcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCC--CcEEEEeCCCCceEEE
Q 003871 506 KDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDD--SSILVHCPCTKKTKAK 581 (790)
Q Consensus 506 ~~~V~~l~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~d--g~I~iwd~~~~~~~~~ 581 (790)
...+..+.|+ ...|..|+....++|.................|.-+-|+.. ++|..+.+ +.+++++.+.+..+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-LVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccc-eeEEEecCCCceEEEEEcccCceEEE
Confidence 4456667788 44566666555678877654432222223334555556544 44444433 4699999988877766
Q ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccC--CCCCCCCeEEEEEeCCCCEEEE-E--e
Q 003871 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG--LVPETTIVNHIQFHPDQIHLLS-I--H 656 (790)
Q Consensus 582 l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~--~~~~~~~v~~i~~sp~~~~l~~-~--~ 656 (790)
+. ....|.++.++. ++|+++-.+ .|+|||+++.+ .+.++..- +. ..+.++.+++.+.++|. + .
T Consensus 84 ~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~Mk-----lLhTI~t~~~n~---~gl~AlS~n~~n~ylAyp~s~t 151 (391)
T KOG2110|consen 84 IF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMK-----LLHTIETTPPNP---KGLCALSPNNANCYLAYPGSTT 151 (391)
T ss_pred Ee-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccce-----eehhhhccCCCc---cceEeeccCCCCceEEecCCCC
Confidence 65 456799998875 467766655 49999999843 33333222 21 45777777777889998 3 6
Q ss_pred CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe-EEEEECCCCeEEEEeccccccCCCCcccccce
Q 003871 657 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH-VKVFDTSTLELRCQINLTAYAQPGTISLELYP 735 (790)
Q Consensus 657 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~-i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 735 (790)
.|.|.+||+.+.+.+..+. .|.+++-+++|+++|.+|||+++.|+ |+|+.+.+|+.+..|.- |.. .+++
T Consensus 152 ~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR------G~~--~~~I 221 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR------GTY--PVSI 221 (391)
T ss_pred CceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC------Cce--eeEE
Confidence 7899999999999998886 48999999999999999999999987 69999999999999863 432 3444
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 736 LVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 736 ~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
.+++|+| ++.+|++.|..++|+|+.+....
T Consensus 222 ySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 222 YSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 4999999 89999999999999999997654
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2e-15 Score=148.81 Aligned_cols=295 Identities=10% Similarity=0.044 Sum_probs=210.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
+.+.+|.+.| +++.|| .+|++| |+|+.|..+++|+++..-.....+.+.+.++.|...|.|+
T Consensus 50 KD~~~H~GCi-------NAlqFS-------~N~~~L----~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L 111 (609)
T KOG4227|consen 50 KDVREHTGCI-------NALQFS-------HNDRFL----ASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSL 111 (609)
T ss_pred hhhhhhcccc-------ceeeec-------cCCeEE----eecCCcceeeeechHHHHhhcCCCCceeccCccccceEEE
Confidence 5667999999 999999 889999 9999999999999975432333333444556788999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-C
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 524 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-d 524 (790)
+|....+++++|+.+++|...|+.+... +...-.....+.|+.+..+ ++.+++.+ +
T Consensus 112 ~F~~~N~~~~SG~~~~~VI~HDiEt~qs---------------------i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~ 170 (609)
T KOG4227|consen 112 EFDLENRFLYSGERWGTVIKHDIETKQS---------------------IYVANENNNRGDVYHMDQHPTDNTLIVVTRA 170 (609)
T ss_pred EEccCCeeEecCCCcceeEeeeccccee---------------------eeeecccCcccceeecccCCCCceEEEEecC
Confidence 9999999999999999999998876433 1111111234588988888 78888877 8
Q ss_pred CeEEEEECCCCc-EEEE--EcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce-EEE---EcCCC---CCEEEE
Q 003871 525 GKISIFSLETFQ-TLAT--FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAK---LKGHQ---NRITCL 592 (790)
Q Consensus 525 g~I~vwd~~~~~-~~~~--~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~-~~~---l~~h~---~~v~~l 592 (790)
+.|.+||.+... .+.. ..........+.|+|.. +|++.+..+-+-+||.+.... +.. +.+-. ..-.++
T Consensus 171 ~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~ 250 (609)
T KOG4227|consen 171 KLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGS 250 (609)
T ss_pred ceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhe
Confidence 999999997644 2211 12334456788999988 889999999999999875432 211 12211 223568
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCC----CCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCC
Q 003871 593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP----ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (790)
Q Consensus 593 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~----~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~ 667 (790)
.|+|+|+.+.+--....-.+||+-+.++ .. +...|.+ ....+.+++|-.|-. +++| .+-.|++|.+..
T Consensus 251 ~~~~~G~Q~msiRR~~~P~~~D~~S~R~---~V---~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 251 LWSPSGNQFMSIRRGKCPLYFDFISQRC---FV---LKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPR 323 (609)
T ss_pred eeCCCCCeehhhhccCCCEEeeeecccc---ee---EeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCC
Confidence 8999999988877666667888876321 11 2233332 113566778876644 6675 566799998752
Q ss_pred C----------c-------------eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 003871 668 L----------N-------------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 668 ~----------~-------------~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~ 710 (790)
. . .+..+. +|..-+..+.|+|...+|++.+-...+++|.-.
T Consensus 324 ~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr--GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 324 ANDSYGFTQIGHDEEEMPSEIFIEKELTVLR--GHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred CccccCccccCcchhhCchhheecceeEEEe--cccccccceeecCCcceEeccchhhheeccccc
Confidence 1 1 112232 478889999999999999999999999999643
No 194
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=8.7e-15 Score=139.43 Aligned_cols=271 Identities=14% Similarity=0.188 Sum_probs=181.8
Q ss_pred CCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCcccceeccCCCceEeee
Q 003871 343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTS--LPDADSAVCAKSLEKSVNLK 420 (790)
Q Consensus 343 d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg--~~la~~~at~s~d~~i~iwd 420 (790)
.+.|.|--.|-.+|+.+. ..-..|..++ +.+.|. ||. .+- +.+||++ ..+|+|.
T Consensus 72 ~Nkvqiv~ld~~s~e~~~-------~a~fd~~YP~-------tK~~wi-------Pd~~g~~p-dlLATs~--D~LRlWr 127 (364)
T KOG0290|consen 72 NNKVQIVQLDEDSGELVE-------DANFDHPYPV-------TKLMWI-------PDSKGVYP-DLLATSS--DFLRLWR 127 (364)
T ss_pred CCeeEEEEEccCCCceec-------cCCCCCCCCc-------cceEec-------CCccccCc-chhhccc--CeEEEEe
Confidence 444552134545555542 2224688998 999997 544 222 3346655 5899999
Q ss_pred ccccCCCCceeeeecc---CCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCcee
Q 003871 421 LQLINEPSECRTLLLP---DNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLV 496 (790)
Q Consensus 421 ~~~~~~~~~~~~~~l~---~~~h~~~V~~l~~sp-dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~ 496 (790)
+.... .....+..+. ...+..++++..|+. |-+++.+++-|-+..|||++++.. +.+
T Consensus 128 i~~ee-~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~------------------~~v 188 (364)
T KOG0290|consen 128 IGDEE-SRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS------------------GTV 188 (364)
T ss_pred ccCcC-CceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc------------------cce
Confidence 97311 1111111111 123667899999987 556777788899999999987421 122
Q ss_pred eeecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCcEEE-EEcC--CCCCeEEEEEcCCC--eEEEEeCC-C
Q 003871 497 MTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLA-TFAN--PPPIATYFILLPQD--LFAFGFDD-S 566 (790)
Q Consensus 497 ~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~-~~~~--~~~~v~~l~~s~~g--~l~sgs~d-g 566 (790)
.+.++ .|+..|..++|. -+.+|+.+ ||.+++||++.-+--. .++. ...+...++|++.+ ++|+-..| .
T Consensus 189 kTQLI--AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~ 266 (364)
T KOG0290|consen 189 KTQLI--AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN 266 (364)
T ss_pred eeEEE--ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence 22222 699999999999 35678877 9999999998643222 2222 24567889999988 77765555 4
Q ss_pred cEEEEeCCCC-ceEEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCce-eeceeeeeeccCCCCCCCCeEEE
Q 003871 567 SILVHCPCTK-KTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKK-LCSKFLHSFQTGLVPETTIVNHI 643 (790)
Q Consensus 567 ~I~iwd~~~~-~~~~~l~~h~~~v~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~-~~~~~l~~~~~~~~~~~~~v~~i 643 (790)
.|.|.|++.. .++..+++|.+.|++++|.|. +..|.+|++|..+.+||+..... ....++-....+ +.|+.+
T Consensus 267 ~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~-----~EVNqi 341 (364)
T KOG0290|consen 267 KVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAG-----GEVNQI 341 (364)
T ss_pred eEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhcc-----ceeeee
Confidence 7999999864 568889999999999999994 67899999999999999986321 011122111222 579999
Q ss_pred EEeC-CCCEEEEEeCCcEEEE
Q 003871 644 QFHP-DQIHLLSIHEGQIDVY 663 (790)
Q Consensus 644 ~~sp-~~~~l~~~~dg~I~iw 663 (790)
.|+| .+.+++++.++.+.+.
T Consensus 342 ~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 342 QWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred eecccCCCEEEEEecCeeeEE
Confidence 9996 5678888776665543
No 195
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=7.6e-15 Score=164.10 Aligned_cols=357 Identities=10% Similarity=0.045 Sum_probs=209.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
..+..|...+ ..++-+ ++++.++ +|||.||+|++|+.......+...+-.+.-+.-.+++.++
T Consensus 1042 AhL~Ehs~~v-------~k~a~s------~~~~s~F----vsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1042 AHLHEHSSAV-------IKLAVS------SEHTSLF----VSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKV 1104 (1431)
T ss_pred ehhhhccccc-------cceeec------CCCCceE----EEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEE
Confidence 6777788887 666665 3667888 9999999999999875322211111111001136789999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---Cc-EEEEec
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS-HLFSAS 523 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~-~l~s~s 523 (790)
...+.|..+|.++.||.|++.+++.... .+. ........-.......|..-+|. +. .++.+.
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~--~~~------------~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNV--SKR------------VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEcccccc--ccc------------eeeeeecccccCCCceEEeecccccccceeEEEEE
Confidence 9999999999999999999998875211 000 00000000001122233334444 34 566666
Q ss_pred -CCeEEEEECCCCcEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcC-CCCCEEEEEEeCCC
Q 003871 524 -GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSL 598 (790)
Q Consensus 524 -dg~I~vwd~~~~~~~~~~~--~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~-h~~~v~~l~~spdg 598 (790)
-+.|..||+.......+++ ...+.|++++.+|.+ .+++|+..|.+.+||++=+.++..+.- +..+++.+..+|-.
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~ 1250 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY 1250 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccC
Confidence 6899999998776665554 335679999999999 999999999999999998888877752 55778888877732
Q ss_pred ---CEEEEEe--CCCcEEEEECCCCceeeceeeeee----------ccC--CCCCCCCeEEEEEeCCCCEEEE-EeCCcE
Q 003871 599 ---NVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSF----------QTG--LVPETTIVNHIQFHPDQIHLLS-IHEGQI 660 (790)
Q Consensus 599 ---~~l~s~s--~dg~I~vwd~~~~~~~~~~~l~~~----------~~~--~~~~~~~v~~i~~sp~~~~l~~-~~dg~I 660 (790)
...++++ ..+.|.+|++.+|.... .+..- +.. ..++.-......+...+..+.+ |.|..|
T Consensus 1251 ~~~S~~vs~~~~~~nevs~wn~~~g~~~~--vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1251 PQESVSVSAGSSSNNEVSTWNMETGLRQT--VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred CCCceEEEecccCCCceeeeecccCcceE--EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence 4555444 46789999999874322 22100 000 0011111222233333455666 589999
Q ss_pred EEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE-EE-----CCCCeEEEEeccccccCCCCcccccc
Q 003871 661 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV-FD-----TSTLELRCQINLTAYAQPGTISLELY 734 (790)
Q Consensus 661 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~v-wd-----~~~~~~~~~~~~~~~~~~gh~~~~v~ 734 (790)
+.||........ +...+..........+.+ .-++.|+.--...+ .. ...+........+...+.+.|.+.|.
T Consensus 1329 R~wD~~~p~~ss-~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~It 1406 (1431)
T KOG1240|consen 1329 RKWDPTRPEISS-YAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPIT 1406 (1431)
T ss_pred eeccCCCccccc-ccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhh
Confidence 999987554332 221111222222222221 12222221100000 11 11111122222333333333455777
Q ss_pred eEEEEEecCCCCEEEEEeCCCcEEEEe
Q 003871 735 PLVIAAHPLEPNRIALGLTNGRVHVIE 761 (790)
Q Consensus 735 ~~~v~~sp~d~~~las~s~Dg~i~iW~ 761 (790)
++++-..+..+|++++.||.|+||.
T Consensus 1407 --dma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1407 --DMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred --hhhhhccCccEEEEecCCCeeeecC
Confidence 7777665567999999999999994
No 196
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.67 E-value=2.6e-15 Score=145.12 Aligned_cols=340 Identities=12% Similarity=0.058 Sum_probs=214.3
Q ss_pred ccccCCC------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 003871 334 CINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSA 407 (790)
Q Consensus 334 ~i~fspd------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~ 407 (790)
-..|||+ ..+..+. |-|..+-+.. +.+. .-+.| ..+.|. .|.-++ +
T Consensus 13 ~c~fSp~g~yiAs~~~yrlv--iRd~~tlq~~--------qlf~-cldki-------~yieW~-------ads~~i---l 64 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLV--IRDSETLQLH--------QLFL-CLDKI-------VYIEWK-------ADSCHI---L 64 (447)
T ss_pred ceeECCCCCeeeeeeeeEEE--EeccchhhHH--------HHHH-HHHHh-------hheeee-------ccceee---e
Confidence 3567787 2333444 6677666542 1111 12344 678887 777776 3
Q ss_pred eeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC-CCcEEEEecCCCCcccccccccccc
Q 003871 408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMES 486 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~-dg~i~vw~~~~~~~~~g~~~~~~~~ 486 (790)
-.+..|+.|.+|++.. ..-..++ .....++.++.|||||+.++..+. +-.|.||.+.+...
T Consensus 65 C~~yk~~~vqvwsl~Q-----pew~ckI--deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~----------- 126 (447)
T KOG4497|consen 65 CVAYKDPKVQVWSLVQ-----PEWYCKI--DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG----------- 126 (447)
T ss_pred eeeeccceEEEEEeec-----ceeEEEe--ccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee-----------
Confidence 5667889999999963 2222122 124688999999999987777666 88999999876432
Q ss_pred ccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec--C--CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eE
Q 003871 487 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LF 559 (790)
Q Consensus 487 ~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s--d--g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l 559 (790)
..++ .....+..++|+ |++.+.++ | ..+.+..-.....++.+...+-..+.+.|+||| .+
T Consensus 127 --------~~~~-----~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l 193 (447)
T KOG4497|consen 127 --------YLLP-----HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL 193 (447)
T ss_pred --------EEec-----ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE
Confidence 1221 234455778888 77766666 3 233333333344455555556667788888887 55
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee-----------------
Q 003871 560 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC----------------- 622 (790)
Q Consensus 560 ~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~----------------- 622 (790)
|+ ||---.-.+..+. -.-.+..++|+|.+++|+.|+.|+.+|+.+--+++...
T Consensus 194 aV---------wd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ 263 (447)
T KOG4497|consen 194 AV---------WDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLE 263 (447)
T ss_pred EE---------ecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhh
Confidence 53 3321111111111 12347778888888888888888887775543321100
Q ss_pred --------------------------------------ceeeeee--ccCCCCCCCCeEEEEEeCCCCEEEEEeC---Cc
Q 003871 623 --------------------------------------SKFLHSF--QTGLVPETTIVNHIQFHPDQIHLLSIHE---GQ 659 (790)
Q Consensus 623 --------------------------------------~~~l~~~--~~~~~~~~~~v~~i~~sp~~~~l~~~~d---g~ 659 (790)
...++.+ +.+..++...+.-++|++|+.++++-.| +.
T Consensus 264 ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pna 343 (447)
T KOG4497|consen 264 KETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNA 343 (447)
T ss_pred hhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCce
Confidence 0000000 0111112246777999999999999544 56
Q ss_pred EEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEE
Q 003871 660 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIA 739 (790)
Q Consensus 660 I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~ 739 (790)
+.+||++..+....+. ...+|....|+|....|+.+.....+++|.......+..-. . + ..+..+.
T Consensus 344 lW~Wdlq~l~l~avLi---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~--------~-G--F~i~~l~ 409 (447)
T KOG4497|consen 344 LWLWDLQNLKLHAVLI---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK--------K-G--FNIQKLQ 409 (447)
T ss_pred EEEEechhhhhhhhhh---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC--------C-C--ceeeeEE
Confidence 9999999877655553 36789999999999888888888889999988765554421 1 2 3344999
Q ss_pred EecCCCCEEEEEeCCCcE
Q 003871 740 AHPLEPNRIALGLTNGRV 757 (790)
Q Consensus 740 ~sp~d~~~las~s~Dg~i 757 (790)
|+- +|..++..+.|.-.
T Consensus 410 W~~-~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 410 WLQ-PGEFIVLCGKDAFC 426 (447)
T ss_pred ecC-CCcEEEEEcCCceE
Confidence 999 89999999998643
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=2e-14 Score=156.93 Aligned_cols=263 Identities=15% Similarity=0.212 Sum_probs=180.6
Q ss_pred CceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCC-EEEEEeCCCcEEEEecCCCCccccccccccccccccCC
Q 003871 414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS 492 (790)
Q Consensus 414 ~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~-~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~ 492 (790)
+.+.+|++... ......+. -...|.+++|+|... .++.|..+|.|.+||+..+... +.
T Consensus 222 ~~~~vW~~~~p--~~Pe~~~~-----~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~--------------~~ 280 (555)
T KOG1587|consen 222 GVLLVWSLKNP--NTPELVLE-----SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT--------------PP 280 (555)
T ss_pred ceEEEEecCCC--CCceEEEe-----cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC--------------CC
Confidence 47899999852 22333322 368899999999655 4555556999999999875440 00
Q ss_pred CceeeeecccCCCCCCeEEEEec----CcEEEEec-CCeEEEEECCCCcE-EE-----EEc------CCCCCeEEEEEcC
Q 003871 493 SKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQT-LA-----TFA------NPPPIATYFILLP 555 (790)
Q Consensus 493 ~~~~~~~~~~~~~~~~V~~l~~s----~~~l~s~s-dg~I~vwd~~~~~~-~~-----~~~------~~~~~v~~l~~s~ 555 (790)
.+... ....|..+|+.+.|. +.-+++++ ||.|..|+++.-.. .. ... .....+++++|.+
T Consensus 281 s~ls~---~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~ 357 (555)
T KOG1587|consen 281 SGLSA---LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP 357 (555)
T ss_pred ccccc---ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc
Confidence 11010 112589999999998 44477777 99999998864322 11 111 1234678999999
Q ss_pred CC--eEEEEeCCCcEEEEeCCCCc--------eEEEEcCCCCCEEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceeece
Q 003871 556 QD--LFAFGFDDSSILVHCPCTKK--------TKAKLKGHQNRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSK 624 (790)
Q Consensus 556 ~g--~l~sgs~dg~I~iwd~~~~~--------~~~~l~~h~~~v~~l~~spdg~~-l~s~s~dg~I~vwd~~~~~~~~~~ 624 (790)
.. .+++|+.+|.|.--+....+ ....+..|.++|+++.++|=+.. +.+++ |-++++|.-... ..
T Consensus 358 ~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~----~~ 432 (555)
T KOG1587|consen 358 TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI----AS 432 (555)
T ss_pred CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC----CC
Confidence 88 99999999998874433221 12244568899999999995544 44444 999999987731 23
Q ss_pred eeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E-eCCcEEEEECCCCc--eeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 003871 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIYVSCK 700 (790)
Q Consensus 625 ~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~I~iwd~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 700 (790)
++. ....+. ..+++++|||...-+++ + .||.+.+||+.... ++.+... +....+.+.|+++|+.|++|..
T Consensus 433 Pl~-~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~ 506 (555)
T KOG1587|consen 433 PLL-SLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDA 506 (555)
T ss_pred cch-hhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--cccccceeecCCCCcEEEEecC
Confidence 443 222222 46999999998755554 4 79999999997543 3333332 3567788889999999999999
Q ss_pred CCeEEEEECCC
Q 003871 701 SGHVKVFDTST 711 (790)
Q Consensus 701 dg~i~vwd~~~ 711 (790)
.|++.+|++..
T Consensus 507 ~G~~~~~~l~~ 517 (555)
T KOG1587|consen 507 NGTTHILKLSE 517 (555)
T ss_pred CCcEEEEEcCc
Confidence 99999999864
No 198
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.65 E-value=5.3e-16 Score=166.44 Aligned_cols=281 Identities=14% Similarity=0.182 Sum_probs=208.2
Q ss_pred chhhhhhhhccCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 316 KSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSC 388 (790)
Q Consensus 316 ~~~~~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~ 388 (790)
..+.++.+.+|.+.|. |+.|... +.|..++ ||..+++.|+ ....||.+.+ +.++
T Consensus 179 kmk~ikrLlgH~naVy--ca~fDrtg~~Iitgsdd~lvK--iwS~et~~~l--------As~rGhs~di-------tdla 239 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVY--CAIFDRTGRYIITGSDDRLVK--IWSMETARCL--------ASCRGHSGDI-------TDLA 239 (1113)
T ss_pred HHHHHHHHHhhhhhee--eeeeccccceEeecCccceee--eeeccchhhh--------ccCCCCcccc-------chhc
Confidence 4456778889998866 9999887 7888999 9999999998 9999999999 9999
Q ss_pred CCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 003871 389 FNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468 (790)
Q Consensus 389 fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw 468 (790)
.+ .+...+ |++|.|..|++|.+.. +....+. .||++.|++++|+|-. +.+.||++++|
T Consensus 240 vs-------~~n~~i----aaaS~D~vIrvWrl~~----~~pvsvL---rghtgavtaiafsP~~----sss~dgt~~~w 297 (1113)
T KOG0644|consen 240 VS-------SNNTMI----AAASNDKVIRVWRLPD----GAPVSVL---RGHTGAVTAIAFSPRA----SSSDDGTCRIW 297 (1113)
T ss_pred cc-------hhhhhh----hhcccCceEEEEecCC----CchHHHH---hccccceeeeccCccc----cCCCCCceEec
Confidence 97 666677 9999999999999973 4443332 3899999999999954 77789999999
Q ss_pred ecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCC
Q 003871 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP 545 (790)
Q Consensus 469 ~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~ 545 (790)
|..-. ++++-+..... ....-+.++.|. +..+++++ |+.-..|.+.--. .+.
T Consensus 298 d~r~~------------~~~y~prp~~~-------~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~ 352 (1113)
T KOG0644|consen 298 DARLE------------PRIYVPRPLKF-------TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA------WRS 352 (1113)
T ss_pred ccccc------------ccccCCCCCCc-------ccccceeeeeccccccccccccCCcccccchhhHhh------hhc
Confidence 97611 11222111100 123445556665 67788888 7877777654211 122
Q ss_pred CCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceee
Q 003871 546 PIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLC 622 (790)
Q Consensus 546 ~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~ 622 (790)
..+.-+..+.+- ..+++-.+-.+++|++.+|...+.+.+|...+..+.++| +.+...+++.||...|||+-.|..+
T Consensus 353 ~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi- 431 (1113)
T KOG0644|consen 353 NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI- 431 (1113)
T ss_pred cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc-
Confidence 222233333233 666777788899999999999999999999999999999 5666778999999999999886533
Q ss_pred ceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCcee
Q 003871 623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT 671 (790)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~ 671 (790)
+....+| +.+..-+||+||..++.+ .-|.++|.....++..
T Consensus 432 ----k~y~~gh----~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 432 ----KHYFIGH----GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred ----eeeeccc----ceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 3223445 478888999999999987 5688999887655443
No 199
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.65 E-value=1.7e-15 Score=142.48 Aligned_cols=243 Identities=13% Similarity=0.154 Sum_probs=174.3
Q ss_pred CCCCCeEEEEec-CcEEEEec-CCeEEEEECCCCcEEEEEc-CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEE
Q 003871 504 DPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 580 (790)
Q Consensus 504 ~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~ 580 (790)
+|.+.|+++.|. +.+|.+|. -|.|++|++.+.+....++ .+...|+.+..-|++.+.+-+.|+.+.+|++.-+..+.
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~ 91 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFIS 91 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEE
Confidence 689999999999 88899999 7999999999988887777 55677888888887777788899999999886421110
Q ss_pred --------------EE-------------c--------------------------CCCCCEEEEEEeC-CCC--EEEEE
Q 003871 581 --------------KL-------------K--------------------------GHQNRITCLAYSL-SLN--VLVSS 604 (790)
Q Consensus 581 --------------~l-------------~--------------------------~h~~~v~~l~~sp-dg~--~l~s~ 604 (790)
.+ . +..+.+.+..+.. ++. ++++|
T Consensus 92 i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaG 171 (323)
T KOG0322|consen 92 IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAG 171 (323)
T ss_pred EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEe
Confidence 00 0 0112334444322 222 46678
Q ss_pred eCCCcEEEEECCCCceeecee----eeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCC--ce--eeeec
Q 003871 605 GADAQLCVWDAVGWKKLCSKF----LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--NH--TSQLV 675 (790)
Q Consensus 605 s~dg~I~vwd~~~~~~~~~~~----l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~--~~--~~~~~ 675 (790)
..+|.+.+||+.++..+-..+ +..-...|. .+|.++.+.+.-..=++ |.+..+..|++... .+ .....
T Consensus 172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~---qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~ 248 (323)
T KOG0322|consen 172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK---QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT 248 (323)
T ss_pred ccCCeEEEEEccCCceeeccccccccccchhhcc---CcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE
Confidence 889999999999864321111 000112233 78999998864333333 35666788877532 21 11111
Q ss_pred CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCC
Q 003871 676 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 755 (790)
Q Consensus 676 ~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg 755 (790)
. ....|..+..-||++.+|+++.|+.|+||+.++...+.++..| .+.|+ +++|+| +.+.+|++|.|+
T Consensus 249 l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH--------sagvn--~vAfsp-d~~lmAaaskD~ 315 (323)
T KOG0322|consen 249 L--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH--------SAGVN--AVAFSP-DCELMAAASKDA 315 (323)
T ss_pred e--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh--------hccee--EEEeCC-CCchhhhccCCc
Confidence 1 1456888999999999999999999999999999999998743 45677 999999 789999999999
Q ss_pred cEEEEec
Q 003871 756 RVHVIEP 762 (790)
Q Consensus 756 ~i~iW~~ 762 (790)
+|-+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 200
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.65 E-value=6.3e-15 Score=150.98 Aligned_cols=202 Identities=14% Similarity=0.161 Sum_probs=156.5
Q ss_pred cccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccc
Q 003871 404 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 483 (790)
Q Consensus 404 a~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~ 483 (790)
+|.++.++.||.+.|-+-. +.+.... ..|.+.|.+-.|+|||.-|+++|.||.|++|.-...
T Consensus 75 ~d~~~i~s~DGkf~il~k~-----~rVE~sv---~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM---------- 136 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS-----ARVERSI---SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM---------- 136 (737)
T ss_pred cceEEEEcCCceEEEeccc-----chhhhhh---hhhhhhhhhcccCCCCceeeeecCCceEEEEeccch----------
Confidence 3445999999999998764 3332211 369999999999999999999999999999975431
Q ss_pred cccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEE
Q 003871 484 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA 560 (790)
Q Consensus 484 ~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~ 560 (790)
+..... ....+|+|++|. .+-++.+..+.+.+=.+.....+-..+.|++-|.++.|++.+ .++
T Consensus 137 ------------LRStl~--Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~ 202 (737)
T KOG1524|consen 137 ------------LRSTVV--QNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIA 202 (737)
T ss_pred ------------HHHHHh--hcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCcccccee
Confidence 111111 367889999999 666777777777777777666677788999999999999999 999
Q ss_pred EEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCe
Q 003871 561 FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 640 (790)
Q Consensus 561 sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v 640 (790)
+|+.|-..++||.. |..+..-..|..+|++++|+|| +.++.+|.+ +.++= .... +.|
T Consensus 203 sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~-----------------~p~~---GSi 259 (737)
T KOG1524|consen 203 SGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFS-----------------SPRV---GSI 259 (737)
T ss_pred ecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-eeeec-----------------CCCc---cce
Confidence 99999999999965 6777666779999999999999 666666642 44411 1111 689
Q ss_pred EEEEEeCCCCEEEEE-eCCcE
Q 003871 641 NHIQFHPDQIHLLSI-HEGQI 660 (790)
Q Consensus 641 ~~i~~sp~~~~l~~~-~dg~I 660 (790)
..++||+||..+++| ..|.+
T Consensus 260 fnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 260 FNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred EEEEEcCCCceeeccccCceE
Confidence 999999999999986 56654
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=3e-14 Score=137.83 Aligned_cols=242 Identities=12% Similarity=0.067 Sum_probs=169.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEE
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLF 520 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~ 520 (790)
..+|+|.+|++|+..+|.+..+..+.||.......
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------------------------------------- 44 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------------------------------------- 44 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCC---------------------------------------------
Confidence 45677777777777777777777777766543221
Q ss_pred EecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-C--ceEEEEcCCCCCEEEEEEeC
Q 003871 521 SASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-K--KTKAKLKGHQNRITCLAYSL 596 (790)
Q Consensus 521 s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~-~--~~~~~l~~h~~~v~~l~~sp 596 (790)
.+..+++..|...|+.++|+|.. .|++|+.|..-++|.... + ++.-.+..+...++++.|+|
T Consensus 45 --------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP 110 (361)
T KOG1523|consen 45 --------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP 110 (361)
T ss_pred --------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC
Confidence 24567778899999999999999 999999999999999843 3 23344556889999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECC-----C---
Q 003871 597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP-----T--- 667 (790)
Q Consensus 597 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~-----~--- 667 (790)
.++.+|+||..+.|.||-++...-= -.-+.+...+. ..|+++.|+|++-+|++| .|+.++++..- +
T Consensus 111 ~enkFAVgSgar~isVcy~E~ENdW--WVsKhikkPir---Stv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpa 185 (361)
T KOG1523|consen 111 KENKFAVGSGARLISVCYYEQENDW--WVSKHIKKPIR---STVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPA 185 (361)
T ss_pred cCceEEeccCccEEEEEEEecccce--ehhhhhCCccc---cceeeeeccCCcceecccccCcceeEEEEeeeccccCCC
Confidence 9999999999999999987752110 00000111222 689999999999999985 89999988742 1
Q ss_pred ----------CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEeccccccCCCCcccccceE
Q 003871 668 ----------LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPL 736 (790)
Q Consensus 668 ----------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~ 736 (790)
|+++..+. ...+.+..+.|+|+|..|+-.+.|+.+.+-|...... +..... ..+ + .+
T Consensus 186 p~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~-~~l-------P--~l 253 (361)
T KOG1523|consen 186 PTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVAT-AQL-------P--LL 253 (361)
T ss_pred CCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhh-ccC-------C--ce
Confidence 12222231 2367899999999999999999999999999887752 222221 111 2 23
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEE
Q 003871 737 VIAAHPLEPNRIALGLTNGRVHVI 760 (790)
Q Consensus 737 ~v~~sp~d~~~las~s~Dg~i~iW 760 (790)
++.|-. .+.++.++.|..=.++
T Consensus 254 s~~~is--e~~vv~ag~~c~P~lf 275 (361)
T KOG1523|consen 254 SVSWIS--ENSVVAAGYDCGPVLF 275 (361)
T ss_pred eeEeec--CCceeecCCCCCceEE
Confidence 566654 3455666666433333
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.63 E-value=8.9e-15 Score=149.93 Aligned_cols=205 Identities=18% Similarity=0.214 Sum_probs=154.8
Q ss_pred CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEE
Q 003871 454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF 530 (790)
Q Consensus 454 ~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vw 530 (790)
..++.+++||.+.+.+-.. ++.. ....|.+.+.+-.|+ |.-|++++ ||.|++|
T Consensus 76 d~~~i~s~DGkf~il~k~~----------------------rVE~--sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiW 131 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA----------------------RVER--SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIW 131 (737)
T ss_pred ceEEEEcCCceEEEecccc----------------------hhhh--hhhhhhhhhhhcccCCCCceeeeecCCceEEEE
Confidence 4678888899888765322 1111 123699999999999 77788777 9999999
Q ss_pred ECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCc
Q 003871 531 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 609 (790)
Q Consensus 531 d~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~ 609 (790)
.-. |-...++.....+|.|++|.|+. .++-+ ..+.+.|=.+.....+-.++.|.+-|.++.|+|..+.+++|+.|-.
T Consensus 132 Srs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k 209 (737)
T KOG1524|consen 132 SRS-GMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR 209 (737)
T ss_pred ecc-chHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee
Confidence 854 55555555667789999999999 44433 2356777777766667789999999999999999999999999999
Q ss_pred EEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEe
Q 003871 610 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 689 (790)
Q Consensus 610 I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s 689 (790)
.++||... ..+. ....|. .+|++++|.|+ +.++.++-++.+ +.. ...+.|..++||
T Consensus 210 fKvWD~~G------~~Lf-~S~~~e---y~ITSva~npd-~~~~v~S~nt~R------------~~~-p~~GSifnlsWS 265 (737)
T KOG1524|consen 210 FKIWDAQG------ANLF-TSAAEE---YAITSVAFNPE-KDYLLWSYNTAR------------FSS-PRVGSIFNLSWS 265 (737)
T ss_pred EEeecccC------cccc-cCChhc---cceeeeeeccc-cceeeeeeeeee------------ecC-CCccceEEEEEc
Confidence 99999887 3343 223344 69999999999 666655444444 221 137889999999
Q ss_pred cCCCEEEEEEcCCeEEEEE
Q 003871 690 CDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 690 ~dg~~l~sgs~dg~i~vwd 708 (790)
+||..+++|+..|.+.+=.
T Consensus 266 ~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 266 ADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred CCCceeeccccCceEEEee
Confidence 9999999999999876543
No 203
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3.7e-14 Score=146.82 Aligned_cols=273 Identities=12% Similarity=0.070 Sum_probs=202.9
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
+.+..+ |||+|+ +|||..--.|++||+.. ...+ +..+-....|.-.-.+.|-..++....|.+
T Consensus 55 t~ik~s-------~DGqY~---lAtG~YKP~ikvydlan-----LSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~ 117 (703)
T KOG2321|consen 55 TRIKVS-------PDGQYL---LATGTYKPQIKVYDLAN-----LSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRT 117 (703)
T ss_pred ceeEec-------CCCcEE---EEecccCCceEEEEccc-----ceee--eeecccccceeEEEeccchhhheEeecCce
Confidence 677777 999998 79999999999999973 2222 222222345555566666666777777887
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEecCCeEEEEECCCCcEEEEE
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATF 541 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~sdg~I~vwd~~~~~~~~~~ 541 (790)
|.+.. ..|...... -...-..++++ ..+++.|+...|.-++++.|+.+..+
T Consensus 118 IefHa----------------------k~G~hy~~R----IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~ 171 (703)
T KOG2321|consen 118 IEFHA----------------------KYGRHYRTR----IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPF 171 (703)
T ss_pred eeehh----------------------hcCeeeeee----cCcCCccccccCCCccEEEeecCcceEEEEcccccccccc
Confidence 77532 122211111 12233455666 45566666888999999999999999
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEc------CCCC-----CEEEEEEeCCCCEEEEEeCCCc
Q 003871 542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK------GHQN-----RITCLAYSLSLNVLVSSGADAQ 609 (790)
Q Consensus 542 ~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~------~h~~-----~v~~l~~spdg~~l~s~s~dg~ 609 (790)
....+.++++..++-. +|++|+.+|.|..||.++...+..+. .|.+ .|+++.|+.||-.+++|+.+|.
T Consensus 172 ~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~ 251 (703)
T KOG2321|consen 172 ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS 251 (703)
T ss_pred ccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc
Confidence 8888999999999998 99999999999999998876555543 2333 3999999999999999999999
Q ss_pred EEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC--CCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEE
Q 003871 610 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT 687 (790)
Q Consensus 610 I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~--~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~ 687 (790)
+.+||+++. .++..-..+.. -+|..+.|.+. +..+++.....++|||-.+|+....+.+ ...+..+|
T Consensus 252 v~iyDLRa~-----~pl~~kdh~~e---~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C 320 (703)
T KOG2321|consen 252 VLIYDLRAS-----KPLLVKDHGYE---LPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP---TSDLNDFC 320 (703)
T ss_pred EEEEEcccC-----CceeecccCCc---cceeeecccccCCCceEEecchHHhhhcccccCCceeeccc---cCCcCcee
Confidence 999999984 34431111222 57889999775 4566666778899999999999888764 66799999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCC
Q 003871 688 YSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 688 ~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
+-|++.+++++-+++.+..|=+..
T Consensus 321 ~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 321 FVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred eecCCceEEEecCCCcceeEEccc
Confidence 999999999999888877776554
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=5.5e-15 Score=148.47 Aligned_cols=197 Identities=17% Similarity=0.116 Sum_probs=149.6
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeee
Q 003871 549 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 627 (790)
Q Consensus 549 ~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~ 627 (790)
.+++|+++| .+++|+.||++|+|+..+...+.....|.+.|.++.|+|||++|++-+.| ..+||+.++|.. ++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-----~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-----LA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-----hh
Confidence 689999999 99999999999999977777766777799999999999999999999999 999999999632 22
Q ss_pred eec-cCCCCCCCCeEEEEEeCCC---C-EEEEE--eCCcEEEEECCCCce---eeeecCCCCCCCeEEEEEecCCCEEEE
Q 003871 628 SFQ-TGLVPETTIVNHIQFHPDQ---I-HLLSI--HEGQIDVYEAPTLNH---TSQLVPDKMDLPITYATYSCDGKCIYV 697 (790)
Q Consensus 628 ~~~-~~~~~~~~~v~~i~~sp~~---~-~l~~~--~dg~I~iwd~~~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s 697 (790)
... .... .....+.|+.|+ . ++++. ..+.|..||+....- .+..+.-.....|++++.|+||++++.
T Consensus 222 ~~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 222 RKTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hcCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence 111 1222 456778888876 2 23332 455677776643221 111111112568999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 698 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 698 gs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
|+.||.|-|++..+-+.++... +-| ..-|+ .+.|+| |.+++++.+.|.++.|..+.-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk------~aH-~~~VT--~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK------EAH-LGFVT--GLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh------hhh-eeeee--eEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999999887766554 133 44455 999999 899999999999999988764
No 205
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.62 E-value=1.6e-14 Score=139.83 Aligned_cols=305 Identities=14% Similarity=0.178 Sum_probs=203.0
Q ss_pred CCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC-CCc
Q 003871 386 SSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TAT 464 (790)
Q Consensus 386 ~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~-dg~ 464 (790)
-.+|| |+|+++ |+++.- .+.|-|.+ +-++.++.. --+.|..+.|..|..+++.+.. ++.
T Consensus 13 ~c~fS-------p~g~yi----As~~~y-rlviRd~~----tlq~~qlf~----cldki~yieW~ads~~ilC~~yk~~~ 72 (447)
T KOG4497|consen 13 FCSFS-------PCGNYI----ASLSRY-RLVIRDSE----TLQLHQLFL----CLDKIVYIEWKADSCHILCVAYKDPK 72 (447)
T ss_pred ceeEC-------CCCCee----eeeeee-EEEEeccc----hhhHHHHHH----HHHHhhheeeeccceeeeeeeeccce
Confidence 35677 999999 998875 77777775 344433321 1467889999999988877665 889
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec--CCeEEEEECCCCcEEEE
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLAT 540 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~ 540 (790)
|.+|++...+. ..+ ......++.+++|+ |+.+...+ +-.|.+|.+.+.+...
T Consensus 73 vqvwsl~Qpew--------------------~ck---Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~- 128 (447)
T KOG4497|consen 73 VQVWSLVQPEW--------------------YCK---IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL- 128 (447)
T ss_pred EEEEEeeccee--------------------EEE---eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-
Confidence 99999876443 111 11356788999999 76666555 8999999998765443
Q ss_pred EcCCCCCeEEEEEcCCC-eEEEEeCCCc---EEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 003871 541 FANPPPIATYFILLPQD-LFAFGFDDSS---ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616 (790)
Q Consensus 541 ~~~~~~~v~~l~~s~~g-~l~sgs~dg~---I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 616 (790)
+.-....+..++|+||| +.+.++.-.. +.+.....-..++.++..+-..+++.|+|||+.||+ ||--
T Consensus 129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~ 199 (447)
T KOG4497|consen 129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNV 199 (447)
T ss_pred ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecch
Confidence 33345567889999999 7777665422 222211222344556556667889999999988775 4422
Q ss_pred CCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeee----------------------
Q 003871 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ---------------------- 673 (790)
Q Consensus 617 ~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~---------------------- 673 (790)
- ...+.....+ -.+..++|+|.+++|++| .|+.+++.+--+.+....
T Consensus 200 L-----eykv~aYe~~-----lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~ 269 (447)
T KOG4497|consen 200 L-----EYKVYAYERG-----LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSI 269 (447)
T ss_pred h-----hheeeeeeec-----cceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcch
Confidence 1 0011101111 367889999999999996 898887765322111100
Q ss_pred --------------------------------------ecCC----CCCCCeEEEEEecCCCEEEEEEcC--CeEEEEEC
Q 003871 674 --------------------------------------LVPD----KMDLPITYATYSCDGKCIYVSCKS--GHVKVFDT 709 (790)
Q Consensus 674 --------------------------------------~~~~----~h~~~v~~l~~s~dg~~l~sgs~d--g~i~vwd~ 709 (790)
+++. .....+.-++||+|..|+++-.+. +.+.+||+
T Consensus 270 ~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdl 349 (447)
T KOG4497|consen 270 VQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDL 349 (447)
T ss_pred hhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEec
Confidence 1100 012346678999999999986543 78999999
Q ss_pred CCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 710 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 710 ~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
+.-++...+.. ..+|. +..|+| ....|+.+.....+++|.+...
T Consensus 350 q~l~l~avLiQ---------k~pir--af~WdP-~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 350 QNLKLHAVLIQ---------KHPIR--AFEWDP-GRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred hhhhhhhhhhh---------cccee--EEEeCC-CCceEEEEcCCceEEEEcCCCc
Confidence 98887666542 34666 999999 6677777766778999988654
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2.6e-14 Score=157.53 Aligned_cols=243 Identities=11% Similarity=0.021 Sum_probs=157.4
Q ss_pred ccccCCC----CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccee
Q 003871 334 CINVMPN----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVC 409 (790)
Q Consensus 334 ~i~fspd----~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at 409 (790)
.|+|.-. ..+..|. +||...+. . +.+.+|...+ .+++|| |||+.+ +.
T Consensus 170 ria~v~~~~~~~~~~~i~--i~d~dg~~-~--------~~lt~~~~~v-------~~p~wS-------PDG~~l----a~ 220 (429)
T PRK01742 170 RIAYVVQKNGGSQPYEVR--VADYDGFN-Q--------FIVNRSSQPL-------MSPAWS-------PDGSKL----AY 220 (429)
T ss_pred EEEEEEEEcCCCceEEEE--EECCCCCC-c--------eEeccCCCcc-------ccceEc-------CCCCEE----EE
Confidence 5555433 2234555 99985544 3 5667787777 899999 999999 76
Q ss_pred ccCC---CceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCccccccccccc
Q 003871 410 AKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNME 485 (790)
Q Consensus 410 ~s~d---~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~-~dg~i~vw~~~~~~~~~g~~~~~~~ 485 (790)
++.+ ..|.+||+.+ +....+.- ..+....++|+|||++|+.++ .+|.+.||.
T Consensus 221 ~s~~~~~~~i~i~dl~t----g~~~~l~~----~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~---------------- 276 (429)
T PRK01742 221 VSFENKKSQLVVHDLRS----GARKVVAS----FRGHNGAPAFSPDGSRLAFASSKDGVLNIYV---------------- 276 (429)
T ss_pred EEecCCCcEEEEEeCCC----CceEEEec----CCCccCceeECCCCCEEEEEEecCCcEEEEE----------------
Confidence 6543 4799999963 43333221 122334689999999988875 467666553
Q ss_pred cccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEe-
Q 003871 486 SQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF- 563 (790)
Q Consensus 486 ~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs- 563 (790)
||+.++. ...+..+...+....|+||| .++.++
T Consensus 277 --------------------------------------------~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 277 --------------------------------------------MGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred --------------------------------------------EECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEEC
Confidence 3333232 23334445557789999999 665544
Q ss_pred CCCcEEEEeCCCC-ceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEE
Q 003871 564 DDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH 642 (790)
Q Consensus 564 ~dg~I~iwd~~~~-~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 642 (790)
.+|...+|++... .....+ .+.. ....|+|||++++.++.++ +.+||+.+++.. . +.... ...+
T Consensus 312 ~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~---~---lt~~~-----~~~~ 376 (429)
T PRK01742 312 RSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE---V---LSSTF-----LDES 376 (429)
T ss_pred CCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE---E---ecCCC-----CCCC
Confidence 5777777776432 222333 3433 4578999999999888765 556999886522 1 11111 2345
Q ss_pred EEEeCCCCEEEEE-eCCcEEEEEC--CCCceeeeecCCCCCCCeEEEEEecC
Q 003871 643 IQFHPDQIHLLSI-HEGQIDVYEA--PTLNHTSQLVPDKMDLPITYATYSCD 691 (790)
Q Consensus 643 i~~sp~~~~l~~~-~dg~I~iwd~--~~~~~~~~~~~~~h~~~v~~l~~s~d 691 (790)
+.|+|+|++++.+ .++.+.+|++ .+|+..+.+.. |...+...+|+|-
T Consensus 377 ~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~--~~g~~~~p~wsp~ 426 (429)
T PRK01742 377 PSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG--SDGQVKFPAWSPY 426 (429)
T ss_pred ceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC--CCCCCCCcccCCC
Confidence 7899999999984 6777777764 35777777753 5677888999974
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=3.8e-13 Score=132.10 Aligned_cols=296 Identities=11% Similarity=0.068 Sum_probs=182.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
..++|+ +.-.-+ |++..|-.|++|+-.. .....++ +..+..|++++|-|.+..-++.+-.+-
T Consensus 102 r~~aWh-------qH~~~f----ava~nddvVriy~kss----t~pt~Lk---s~sQrnvtclawRPlsaselavgCr~g 163 (445)
T KOG2139|consen 102 RGVAWH-------QHIIAF----AVATNDDVVRIYDKSS----TCPTKLK---SVSQRNVTCLAWRPLSASELAVGCRAG 163 (445)
T ss_pred eeEeec-------hhhhhh----hhhccCcEEEEeccCC----CCCceec---chhhcceeEEEeccCCcceeeeeecce
Confidence 566776 433334 8999999999999873 2222222 234678999999997654444444566
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec--CCeEEEEECCCCcEEEE
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLAT 540 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~ 540 (790)
|.+|........ ...++......+++.+ ..+| .+|+++.|. |..+++++ +..|.+||..++..+..
T Consensus 164 IciW~~s~tln~------~r~~~~~s~~~~qvl~---~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 164 ICIWSDSRTLNA------NRNIRMMSTHHLQVLQ---DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eEEEEcCccccc------ccccccccccchhhee---CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc
Confidence 999987643220 0000000001111221 1234 789999999 88899998 68999999999987766
Q ss_pred EcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC--
Q 003871 541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-- 617 (790)
Q Consensus 541 ~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~-- 617 (790)
.....+.++-+.||||| ++++++-|+..++|+.........+..-++.|....|+|+|++|+.+.. |.-++|.+.-
T Consensus 234 ~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~ 312 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDG 312 (445)
T ss_pred cccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecC
Confidence 54556778899999999 9999999999999965543333333334568999999999998665443 2333443321
Q ss_pred --Ccee------eceeee-----eeccCCCCCCCCeEEEEEeCCCCEEEEEe---C------CcEEEEECCCCceeeeec
Q 003871 618 --WKKL------CSKFLH-----SFQTGLVPETTIVNHIQFHPDQIHLLSIH---E------GQIDVYEAPTLNHTSQLV 675 (790)
Q Consensus 618 --~~~~------~~~~l~-----~~~~~~~~~~~~v~~i~~sp~~~~l~~~~---d------g~I~iwd~~~~~~~~~~~ 675 (790)
+... ....+. ++..+...-.+++.+++|+|.|.+||+.. + ..|.+||.+..-.+.-..
T Consensus 313 ~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~ 392 (445)
T KOG2139|consen 313 EDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSY 392 (445)
T ss_pred CCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEe
Confidence 1100 000010 01111111126889999999999999852 2 237788887544433221
Q ss_pred -CCCCCCCeEEEEEec---CCCEEEEEEcCCeEEEEEC
Q 003871 676 -PDKMDLPITYATYSC---DGKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 676 -~~~h~~~v~~l~~s~---dg~~l~sgs~dg~i~vwd~ 709 (790)
+.........++|+| +|.+|..+=.-|.+.-|++
T Consensus 393 cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 393 CGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred cccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 111123355566665 5666666655666666654
No 208
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.9e-13 Score=132.05 Aligned_cols=282 Identities=17% Similarity=0.170 Sum_probs=187.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---Cc
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS 517 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~ 517 (790)
+..+..++|++.-..++++..|-.|++|+-..... .. +.......|+|++|- +.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p-------------------t~----Lks~sQrnvtclawRPlsas 154 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-------------------TK----LKSVSQRNVTCLAWRPLSAS 154 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC-------------------ce----ecchhhcceeEEEeccCCcc
Confidence 45688899999777788999999999998654111 01 112356789999999 77
Q ss_pred EEEEecCCeEEEEECCCC----cEE----------EEEcCCCCCeEEEEEcCCC-eEEEEeC-CCcEEEEeCCCCceEEE
Q 003871 518 HLFSASGGKISIFSLETF----QTL----------ATFANPPPIATYFILLPQD-LFAFGFD-DSSILVHCPCTKKTKAK 581 (790)
Q Consensus 518 ~l~s~sdg~I~vwd~~~~----~~~----------~~~~~~~~~v~~l~~s~~g-~l~sgs~-dg~I~iwd~~~~~~~~~ 581 (790)
.++.|+.+.|.+|..... +.+ ....+| .+|+++.|.+|| .+++++. |..|.|||..++..+..
T Consensus 155 elavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 155 ELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc
Confidence 889999889999986531 111 112233 579999999999 8888775 56899999999876654
Q ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC-CCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcE
Q 003871 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQI 660 (790)
Q Consensus 582 l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~-~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I 660 (790)
.....+.++-+.|||||.+|..++-|+..++|+.. ++.... ...+. +.|...+|+|+|++|+.+..|.-
T Consensus 234 ~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er------w~lgs----grvqtacWspcGsfLLf~~sgsp 303 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER------WILGS----GRVQTACWSPCGSFLLFACSGSP 303 (445)
T ss_pred cccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc------eeccC----CceeeeeecCCCCEEEEEEcCCc
Confidence 43345678999999999999999999999999544 322211 11111 57999999999999987655555
Q ss_pred EEEECCCCc-e--------------eeee------cCC-CCCCCeEEEEEecCCCEEEEEEcCC--------eEEEEECC
Q 003871 661 DVYEAPTLN-H--------------TSQL------VPD-KMDLPITYATYSCDGKCIYVSCKSG--------HVKVFDTS 710 (790)
Q Consensus 661 ~iwd~~~~~-~--------------~~~~------~~~-~h~~~v~~l~~s~dg~~l~sgs~dg--------~i~vwd~~ 710 (790)
++|.+.-.. . +..+ .+. --.+++.+++|+|.|.+|++.-..+ .|.+||..
T Consensus 304 ~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr 383 (445)
T KOG2139|consen 304 RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTR 383 (445)
T ss_pred eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccc
Confidence 555543110 0 0000 000 0146788999999999999876543 46777776
Q ss_pred CCeEEEEeccccccCCCCcccccceEEEEEec--CCCCEEEEEeCCCcEEEEecC
Q 003871 711 TLELRCQINLTAYAQPGTISLELYPLVIAAHP--LEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 711 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp--~d~~~las~s~Dg~i~iW~~~ 763 (790)
..-.+.-. .-.+.. |. . +-.++|+| .++.+|..+=..|.+.-|.+.
T Consensus 384 ~sp~vels-~cg~i~-ge---~--P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 384 KSPPVELS-YCGMIG-GE---Y--PAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ccCceEEE-eccccc-CC---C--CceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 54333221 111111 11 1 22455555 345667777677877777653
No 209
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.1e-13 Score=152.47 Aligned_cols=207 Identities=17% Similarity=0.104 Sum_probs=144.1
Q ss_pred CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCce--EEEEcCCCCCEEEEEEeCC
Q 003871 524 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKT--KAKLKGHQNRITCLAYSLS 597 (790)
Q Consensus 524 dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~d---g~I~iwd~~~~~~--~~~l~~h~~~v~~l~~spd 597 (790)
+..|.+||.+... .+.+..+...+.+.+|+||| .++.++.+ ..|++||+.+++. +..+.+| ...++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 3689999987444 56667778889999999999 77776643 3699999988754 3334443 346899999
Q ss_pred CCEEEEEe-CCCcEEEE--ECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E-eCCcEEEEECCC-Ccee
Q 003871 598 LNVLVSSG-ADAQLCVW--DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT-LNHT 671 (790)
Q Consensus 598 g~~l~s~s-~dg~I~vw--d~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~I~iwd~~~-~~~~ 671 (790)
|+.|+.++ .+|.+.+| |+.++.. ..+.. +. ..+.+..|+|||+.|+. + .++...||++.. +...
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~------~~lt~-~~---~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTP------SQLTS-GA---GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCe------Eeecc-CC---CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 99988765 67765555 6665431 21222 22 46788999999998876 4 467777776543 2222
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEE
Q 003871 672 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 672 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~ 751 (790)
..+ . +.. ...+|+|||++|+.++.++ +.+||+.+++...... ++ ... .++|+| ||++|+++
T Consensus 329 ~~l-~--~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-------~~---~~~--~~~~sP-dG~~i~~~ 389 (429)
T PRK01742 329 SLV-G--GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-------TF---LDE--SPSISP-NGIMIIYS 389 (429)
T ss_pred EEe-c--CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-------CC---CCC--CceECC-CCCEEEEE
Confidence 223 2 222 4578999999999887765 5569999987653321 11 123 678999 89999999
Q ss_pred eCCCcEEEEecC
Q 003871 752 LTNGRVHVIEPL 763 (790)
Q Consensus 752 s~Dg~i~iW~~~ 763 (790)
+.+|.+.+|.+.
T Consensus 390 s~~g~~~~l~~~ 401 (429)
T PRK01742 390 STQGLGKVLQLV 401 (429)
T ss_pred EcCCCceEEEEE
Confidence 999999988864
No 210
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.7e-13 Score=140.51 Aligned_cols=293 Identities=12% Similarity=0.113 Sum_probs=200.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEeC-CCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEE-ec-
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA-LR- 515 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~-dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~-~s- 515 (790)
.|...-+.|..+|||+|+++.|. --.|++||+.+-.. . +..+..+.+..+. .+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL----------------------K--FERhlDae~V~feiLsD 104 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL----------------------K--FERHLDAEVVDFEILSD 104 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee----------------------e--eeecccccceeEEEecc
Confidence 46777889999999999877665 77899999876332 0 1111223333322 22
Q ss_pred --CcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEE
Q 003871 516 --GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 592 (790)
Q Consensus 516 --~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l 592 (790)
...++...|.+|.+.... |.- ..+.- +..-..++++.-. -|+.++....|+-+++..|..+..+....+.++++
T Consensus 105 D~SK~v~L~~DR~IefHak~-G~h-y~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 105 DYSKSVFLQNDRTIEFHAKY-GRH-YRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred chhhheEeecCceeeehhhc-Cee-eeeec-CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceee
Confidence 333444446666554332 211 11111 1122456666555 45555556689999999999998888888999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCC--CCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCc
Q 003871 593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP--ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 669 (790)
Q Consensus 593 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~--~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~ 669 (790)
..++-..+|++|+.+|.|..||.++...........-...|.. ....|+++.|+.+|-.+++| .+|.+.|||+++.+
T Consensus 182 ~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 182 SINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred eecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 9999888999999999999999998443322211111011110 11359999999999999997 89999999999988
Q ss_pred eeeeecCCCCCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCE
Q 003871 670 HTSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 747 (790)
Q Consensus 670 ~~~~~~~~~h~~~v~~l~~s~d--g~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~ 747 (790)
++..-. +....+|..+.|.+. ++.+++. ....++|||-.+|+....+.+. ..++ .+++-| ++.+
T Consensus 262 pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt---------~~lN--D~C~~p-~sGm 327 (703)
T KOG2321|consen 262 PLLVKD-HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT---------SDLN--DFCFVP-GSGM 327 (703)
T ss_pred ceeecc-cCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc---------CCcC--ceeeec-CCce
Confidence 865432 223678999999765 3455543 4578999999999988877642 2466 899999 7889
Q ss_pred EEEEeCCCcEEEEecC--CCccccccC
Q 003871 748 IALGLTNGRVHVIEPL--ESEVEWGKL 772 (790)
Q Consensus 748 las~s~Dg~i~iW~~~--~~~~~w~~~ 772 (790)
+.+|-.++.+..|=+. .+.|.|+..
T Consensus 328 ~f~Ane~~~m~~yyiP~LGPaPrWCSf 354 (703)
T KOG2321|consen 328 FFTANESSKMHTYYIPSLGPAPRWCSF 354 (703)
T ss_pred EEEecCCCcceeEEccccCCCchhhhH
Confidence 9999988877766554 356789875
No 211
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.59 E-value=8.1e-14 Score=152.22 Aligned_cols=277 Identities=12% Similarity=0.068 Sum_probs=185.7
Q ss_pred CCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCcccceeccCCCceEeeec
Q 003871 343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTS-LPDADSAVCAKSLEKSVNLKL 421 (790)
Q Consensus 343 d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg-~~la~~~at~s~d~~i~iwd~ 421 (790)
++.+. +|+.......- ..+. ....| +|+.|+ |.. .++ |.|..+|+|.+||+
T Consensus 221 ~~~~~--vW~~~~p~~Pe-------~~~~-~~s~v-------~~~~f~-------p~~p~ll----~gG~y~GqV~lWD~ 272 (555)
T KOG1587|consen 221 DGVLL--VWSLKNPNTPE-------LVLE-SPSEV-------TCLKFC-------PFDPNLL----AGGCYNGQVVLWDL 272 (555)
T ss_pred CceEE--EEecCCCCCce-------EEEe-cCCce-------eEEEec-------cCCcceE----EeeccCceEEEEEc
Confidence 34566 89887652210 2222 34455 899998 544 455 99999999999999
Q ss_pred cccCCCCceeeeeccCCCCCCceEEEEEcCCCCE--EEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeee
Q 003871 422 QLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF--LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN 499 (790)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~--l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~ 499 (790)
.....+- ...+......|..+++.+.|..+-.- +++++.||.|..|+++.-..+........ .. -..
T Consensus 273 ~~~~~~~-~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~-------~~--~~~- 341 (555)
T KOG1587|consen 273 RKGSDTP-PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES-------KK--HKG- 341 (555)
T ss_pred cCCCCCC-CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccc-------cc--ccc-
Confidence 7532210 22222233579999999999875444 99999999999998775433111110000 00 000
Q ss_pred cccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCC--------cEEEEEcCCCCCeEEEEEcCCC--eEEEEeCC
Q 003871 500 DIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF--------QTLATFANPPPIATYFILLPQD--LFAFGFDD 565 (790)
Q Consensus 500 ~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~--------~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~d 565 (790)
........+++++|. ...++.|+ +|.|.-=+.... +....+..|.++|.++.++|=+ .+.+++ |
T Consensus 342 -~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-D 419 (555)
T KOG1587|consen 342 -QQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-D 419 (555)
T ss_pred -cccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-c
Confidence 000234567888888 55677777 688776333221 1233556788999999999999 444554 9
Q ss_pred CcEEEEeCC-CCceEEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEE
Q 003871 566 SSILVHCPC-TKKTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 643 (790)
Q Consensus 566 g~I~iwd~~-~~~~~~~l~~h~~~v~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i 643 (790)
-+|+||... ...++..+..+...|++++|||. ...++++..||.+.+||+..... .++.+...+ . ...+.+
T Consensus 420 W~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~---~Pv~s~~~~-~---~~l~~~ 492 (555)
T KOG1587|consen 420 WTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE---EPVLSQKVC-S---PALTRV 492 (555)
T ss_pred ceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc---CCccccccc-c---ccccee
Confidence 999999987 56677777778888999999995 45788888999999999986432 233322222 2 467788
Q ss_pred EEeCCCCEEEEE-eCCcEEEEECCC
Q 003871 644 QFHPDQIHLLSI-HEGQIDVYEAPT 667 (790)
Q Consensus 644 ~~sp~~~~l~~~-~dg~I~iwd~~~ 667 (790)
.|++.|+.|++| ..|.+++|++..
T Consensus 493 ~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 493 RWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ecCCCCcEEEEecCCCcEEEEEcCc
Confidence 999999999998 789999999963
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.59 E-value=2.2e-12 Score=137.44 Aligned_cols=315 Identities=14% Similarity=0.132 Sum_probs=194.8
Q ss_pred eeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccc
Q 003871 408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQ 487 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~ 487 (790)
++-..++.|.+.|... ......+.. ....-..+.|+|||+++++++.||.|.++|+.+.+.
T Consensus 10 V~~~~~~~v~viD~~t---~~~~~~i~~----~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~------------ 70 (369)
T PF02239_consen 10 VVERGSGSVAVIDGAT---NKVVARIPT----GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV------------ 70 (369)
T ss_dssp EEEGGGTEEEEEETTT----SEEEEEE-----STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE------------
T ss_pred EEecCCCEEEEEECCC---CeEEEEEcC----CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE------------
Confidence 5666789999999973 233344331 223345578999999999999999999999876543
Q ss_pred cccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec--CCeEEEEECCCCcEEEEEcCC-------CCCeEEEEEcCC
Q 003871 488 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANP-------PPIATYFILLPQ 556 (790)
Q Consensus 488 i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~-------~~~v~~l~~s~~ 556 (790)
+... .......+++++ |+++++++ .+.+.++|.++.+.++.+... ...+..+..+|.
T Consensus 71 ---------v~~i---~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~ 138 (369)
T PF02239_consen 71 ---------VATI---KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG 138 (369)
T ss_dssp ---------EEEE---E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS
T ss_pred ---------EEEE---ecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCC
Confidence 2211 134456788998 89988887 799999999999999887532 346778888888
Q ss_pred C-eEEEE-eCCCcEEEEeCCCCceEE-EEcCCCCCEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCceeeceeeeeeccC
Q 003871 557 D-LFAFG-FDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTG 632 (790)
Q Consensus 557 g-~l~sg-s~dg~I~iwd~~~~~~~~-~l~~h~~~v~~l~~spdg~~l~s~-s~dg~I~vwd~~~~~~~~~~~l~~~~~~ 632 (790)
. .++.. -+.+.|.+.|....+.+. .............|+|++++++.+ ..+..|-++|.++++.... +..+
T Consensus 139 ~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~-----i~~g 213 (369)
T PF02239_consen 139 RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL-----IDTG 213 (369)
T ss_dssp SSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE-----EE-S
T ss_pred CCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEE-----eecc
Confidence 8 55544 445789888987654332 222234567789999999987654 5577899999998654321 2222
Q ss_pred CCCCCCCeEEEEEeCC----------CCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE---
Q 003871 633 LVPETTIVNHIQFHPD----------QIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS--- 698 (790)
Q Consensus 633 ~~~~~~~v~~i~~sp~----------~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg--- 698 (790)
..++..+...+ .+|. +...++ -..+.+.+||..+.+.++++... ..+ ..+.-+|+++++.+.
T Consensus 214 ~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~--G~g-lFi~thP~s~~vwvd~~~ 289 (369)
T PF02239_consen 214 KKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ--GGG-LFIKTHPDSRYVWVDTFL 289 (369)
T ss_dssp SSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S--SSS---EE--TT-SEEEEE-TT
T ss_pred ccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC--CCc-ceeecCCCCccEEeeccC
Confidence 22221233322 1222 222222 23446678999999999999763 344 788889999999987
Q ss_pred -EcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEe--CCCcEEEEecCCCccccccC
Q 003871 699 -CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL--TNGRVHVIEPLESEVEWGKL 772 (790)
Q Consensus 699 -s~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s--~Dg~i~iW~~~~~~~~w~~~ 772 (790)
...++|.++|.++.+....+... ....++.+.|++ +|+.+..+. .+|.|.|+|..+.+..-...
T Consensus 290 ~~~~~~v~viD~~tl~~~~~i~~~---------~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 290 NPDADTVQVIDKKTLKVVKTITPG---------PGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -SSHT-EEEEECCGTEEEE-HHHH---------HT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCCceEEEEECcCcceeEEEecc---------CCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 44589999999999887776532 121255899999 888654443 33479999999988664443
No 213
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.3e-14 Score=147.43 Aligned_cols=300 Identities=14% Similarity=0.065 Sum_probs=219.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEE
Q 003871 367 KPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVR 446 (790)
Q Consensus 367 ~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~ 446 (790)
...|.+|.+.| ..+.|. ..|..+ ++||.|..|.+||... ...... +. .||...|..
T Consensus 135 ~~kL~~H~GcV-------ntV~FN-------~~Gd~l----~SgSDD~~vv~WdW~~---~~~~l~--f~-SGH~~NvfQ 190 (559)
T KOG1334|consen 135 QKKLNKHKGCV-------NTVHFN-------QRGDVL----ASGSDDLQVVVWDWVS---GSPKLS--FE-SGHCNNVFQ 190 (559)
T ss_pred hhcccCCCCcc-------ceeeec-------ccCcee----eccCccceEEeehhhc---cCcccc--cc-cccccchhh
Confidence 37889999999 999998 889999 9999999999999963 222233 22 489999998
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEEEE
Q 003871 447 LIYSHS--GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFS 521 (790)
Q Consensus 447 l~~spd--g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s 521 (790)
..|-|. ...+++++.||.+++=.+... +.+........|.++|..++.. ..-+.+
T Consensus 191 aKFiP~s~d~ti~~~s~dgqvr~s~i~~t--------------------~~~e~t~rl~~h~g~vhklav~p~sp~~f~S 250 (559)
T KOG1334|consen 191 AKFIPFSGDRTIVTSSRDGQVRVSEILET--------------------GYVENTKRLAPHEGPVHKLAVEPDSPKPFLS 250 (559)
T ss_pred hhccCCCCCcCceeccccCceeeeeeccc--------------------cceecceecccccCccceeeecCCCCCcccc
Confidence 889883 356899999999997654432 2232222233689999999888 455677
Q ss_pred ec-CCeEEEEECCCCcEEEEEc---CCCC---CeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc------eEEEEcC--
Q 003871 522 AS-GGKISIFSLETFQTLATFA---NPPP---IATYFILLPQD--LFAFGFDDSSILVHCPCTKK------TKAKLKG-- 584 (790)
Q Consensus 522 ~s-dg~I~vwd~~~~~~~~~~~---~~~~---~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~------~~~~l~~-- 584 (790)
++ |+.+.-+|+.++.....+. .+.. ....++..|.. .+++|+.|..+++||.+.-. .+..+..
T Consensus 251 ~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h 330 (559)
T KOG1334|consen 251 CGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH 330 (559)
T ss_pred cccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc
Confidence 77 9999999998765444332 2222 45788999988 99999999999999976421 1233322
Q ss_pred ----CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce---e----eceeeeeeccCCCCCCCCeEEEE-EeCCCCEE
Q 003871 585 ----HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK---L----CSKFLHSFQTGLVPETTIVNHIQ-FHPDQIHL 652 (790)
Q Consensus 585 ----h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~---~----~~~~l~~~~~~~~~~~~~v~~i~-~sp~~~~l 652 (790)
..-.|++++|+.++.-+.++..|-.|+++.-..+.- . ....++.+..+|.+. ..|..+- |-|...|+
T Consensus 331 l~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyV 409 (559)
T KOG1334|consen 331 LVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYV 409 (559)
T ss_pred ccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceE
Confidence 234689999998877777777888999995443221 0 012223335666632 3466665 46888999
Q ss_pred EEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003871 653 LSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 653 ~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~ 713 (790)
++| .-|.|.||+-.+++.++-+.+..| .|.|+.=+|--..||++|-|..|+||-..+.+
T Consensus 410 vSGSDCGhIFiW~K~t~eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 410 VSGSDCGHIFIWDKKTGEIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred EecCccceEEEEecchhHHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 997 568899999999999988877544 89999999999999999999999999875543
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=6.9e-13 Score=128.56 Aligned_cols=237 Identities=16% Similarity=0.228 Sum_probs=165.1
Q ss_pred CeEEEEec--CcEEEEecCCeEEEEECCCCcEEEEEcCCCCC--eEEEEEcCCC-eEEEEeCC------CcEEEEeCCCC
Q 003871 508 SISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPI--ATYFILLPQD-LFAFGFDD------SSILVHCPCTK 576 (790)
Q Consensus 508 ~V~~l~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~--v~~l~~s~~g-~l~sgs~d------g~I~iwd~~~~ 576 (790)
...+++|+ ..-+++|.|...++|+.+-.+.......+.++ +..+-| ..+ ..++|+.+ ..|.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf-R~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF-RSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh-hhceEEEecCCCCCCCCCceEEEEecccC
Confidence 44558888 55677777888999998753332222222222 222222 233 44455544 37999996666
Q ss_pred ceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E
Q 003871 577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 655 (790)
Q Consensus 577 ~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~ 655 (790)
.++..+. ...+|.++.+.++ .|++.- .+.|+||...+.- +.+..+.....| ....++.-+.+..+||. |
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~----k~l~~~et~~NP--kGlC~~~~~~~k~~LafPg 155 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNP----KLLHVIETRSNP--KGLCSLCPTSNKSLLAFPG 155 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCCh----hheeeeecccCC--CceEeecCCCCceEEEcCC
Confidence 7777776 5678999999876 565554 6799999988522 222212222211 34445544445556666 6
Q ss_pred -eCCcEEEEECCCCcee--eeecCCCCCCCeEEEEEecCCCEEEEEEcCCe-EEEEECCCCeEEEEeccccccCCCCccc
Q 003871 656 -HEGQIDVYEAPTLNHT--SQLVPDKMDLPITYATYSCDGKCIYVSCKSGH-VKVFDTSTLELRCQINLTAYAQPGTISL 731 (790)
Q Consensus 656 -~dg~I~iwd~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~-i~vwd~~~~~~~~~~~~~~~~~~gh~~~ 731 (790)
.-|.|.|-|+...+.- ..+ ..|...|.+++.+.+|..+||+|..|+ |+|||..+|+++..+.- |....
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I--~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR------G~d~A 227 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSII--NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR------GVDRA 227 (346)
T ss_pred CccceEEEEEhhhcCcCCceEE--EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec------CCchh
Confidence 6799999999765542 333 358999999999999999999999998 79999999999998763 65566
Q ss_pred ccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 732 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 732 ~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
.|+ +++||| +..+||++|+-|++.|+.+....
T Consensus 228 ~iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 228 DIY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eEE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 788 999999 89999999999999999987643
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=1e-14 Score=147.36 Aligned_cols=279 Identities=11% Similarity=0.111 Sum_probs=215.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEE
Q 003871 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 519 (790)
Q Consensus 442 ~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l 519 (790)
..-..+.++.+|++|+.|+.-|.+-.+|+.+... .... .-...|.++.|- .+++
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L---------------------~~Ei---~v~Etv~Dv~~LHneq~~ 185 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL---------------------HFEI---NVMETVRDVTFLHNEQFF 185 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccccee---------------------eeee---ehhhhhhhhhhhcchHHH
Confidence 4567788999999999999999999999887543 1111 245678888888 6677
Q ss_pred EEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCC
Q 003871 520 FSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL 598 (790)
Q Consensus 520 ~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg 598 (790)
|++....+.+||-. |..+.-+..+ ..|..+.|-|-. +|++++..|.+..-|+.+|+.+..+..-.+.+..+.-+|-.
T Consensus 186 AVAQK~y~yvYD~~-GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N 263 (545)
T KOG1272|consen 186 AVAQKKYVYVYDNN-GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN 263 (545)
T ss_pred HhhhhceEEEecCC-CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc
Confidence 77778999999975 6666666544 458899999999 99999999999999999999999988888899999999988
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCC
Q 003871 599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD 677 (790)
Q Consensus 599 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~ 677 (790)
..+-+|...|+|.+|..... .++-.+.. |. ++|.++++.++|+|+++ |.|..++|||+++-..+.++..
T Consensus 264 aVih~GhsnGtVSlWSP~sk-----ePLvKiLc-H~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t- 333 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNSK-----EPLVKILC-HR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT- 333 (545)
T ss_pred ceEEEcCCCceEEecCCCCc-----chHHHHHh-cC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeec-
Confidence 88999999999999999873 34443444 44 69999999999999999 6999999999998877766643
Q ss_pred CCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC-CCCe--EEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC
Q 003871 678 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDT-STLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 754 (790)
Q Consensus 678 ~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~-~~~~--~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D 754 (790)
..+...++||..| +++.+....|.||.= -.+. ....+..|. ..+.|. .+.|.| -...|-.|..-
T Consensus 334 --p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~------~~~~V~--~l~FcP-~EDvLGIGH~~ 400 (545)
T KOG1272|consen 334 --PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHR------CGGPVE--DLRFCP-YEDVLGIGHAG 400 (545)
T ss_pred --CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhc------cCcccc--cceecc-HHHeeeccccC
Confidence 3567788888665 455566778999952 2211 111111111 133566 999999 78888888888
Q ss_pred CcEEEEecCCCcccc
Q 003871 755 GRVHVIEPLESEVEW 769 (790)
Q Consensus 755 g~i~iW~~~~~~~~w 769 (790)
|---+.-+..|++..
T Consensus 401 G~tsilVPGsGePN~ 415 (545)
T KOG1272|consen 401 GITSILVPGSGEPNY 415 (545)
T ss_pred CceeEeccCCCCCCc
Confidence 877788888888764
No 216
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3e-14 Score=143.19 Aligned_cols=196 Identities=15% Similarity=0.128 Sum_probs=154.1
Q ss_pred EEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcC-
Q 003871 510 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG- 584 (790)
Q Consensus 510 ~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~- 584 (790)
.+++|+ |..+++++ ||++|+|+..+...+.....|...|.++.|+||| .|++-+.| ..+||+.++|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678888 79999999 9999999988888888888899999999999999 99999999 899999999976655542
Q ss_pred -CCCCEEEEEEeCCC-----CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eC
Q 003871 585 -HQNRITCLAYSLSL-----NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 657 (790)
Q Consensus 585 -h~~~v~~l~~spdg-----~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d 657 (790)
.......+.|+.|+ ...+....-+.|+.||+..+..-..-...+....+ ..|++++.+++|+++|.| .|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEeccC
Confidence 22345677888776 33444455667888887764431111222222233 379999999999999996 89
Q ss_pred CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 658 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 658 g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
|.|-|++..+.+.++-.+ ..|...|+.+.|+||.+++++.+.|....|..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999888876665 45889999999999999999999998888877654
No 217
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.57 E-value=6.5e-15 Score=138.47 Aligned_cols=161 Identities=22% Similarity=0.256 Sum_probs=132.9
Q ss_pred chhHHHHHHHHHHHHhcHHHHHHHHHHhcCCch---------hHHHHHHHHhcCCHHHHHHHhccc--ccccCCccccee
Q 003871 12 TYTHLITLIMKFLEEENFKESLQALEQESKIFF---------NVHRFGEIVMNGEWEKAEKYLSAF--TKLDDSNHSKKM 80 (790)
Q Consensus 12 ~~~e~~~li~q~l~~~g~~~s~~~l~~Esg~~~---------~~~~~~~~i~~g~w~~~~~~l~~~--~~~~~~~~~~~~ 80 (790)
.++++.||||.||-.+||.++|..+.+|+|+.. +...+|.+|..|+.++|+..+.++ +.++.+.. +
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~---l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE---L 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh---H
Confidence 489999999999999999999999999999987 288999999999999999999998 45666644 7
Q ss_pred eehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhcccccchhhhccCCCC--chhHHHHHHHHHHHh
Q 003871 81 FFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTN--ATSSRAKLIDSLKLL 158 (790)
Q Consensus 81 ~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~ 158 (790)
.|.+++|+++||++.+...+||.|+|.+|+|++..+++.++.|...|...-+. .+..++.+. ..+.|.++++.++..
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~-~~~~sp~~~l~~~s~R~kvA~~vN~a 180 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFE-LSQESPSAELLSQSLRQKVASEVNSA 180 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcC-CcccCcHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999887888999999888776663 344444433 467799999999887
Q ss_pred hcccccccccccCCCCcchHHHHHHH
Q 003871 159 VKENRILQDKLIFPCVNNSALSSLIK 184 (790)
Q Consensus 159 i~~~~~~~~~~~~~~~p~~rL~~L~~ 184 (790)
|=...= .. ...+|..|++
T Consensus 181 iL~~~~---~~-----~~~~l~~llk 198 (228)
T KOG2659|consen 181 ILASQE---HE-----SEPKLPFLLK 198 (228)
T ss_pred HHHHhc---cc-----ccchHHHHHH
Confidence 655222 11 1447777764
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=2.3e-13 Score=131.87 Aligned_cols=230 Identities=14% Similarity=0.118 Sum_probs=166.0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
+|.+|+ +|+..+ |.+-....|.||...........+.+. .|...|+.+.|+|.++.|++|+.|..
T Consensus 14 tchAwn-------~drt~i----Av~~~~~evhiy~~~~~~~w~~~htls----~Hd~~vtgvdWap~snrIvtcs~drn 78 (361)
T KOG1523|consen 14 TCHAWN-------SDRTQI----AVSPNNHEVHIYSMLGADLWEPAHTLS----EHDKIVTGVDWAPKSNRIVTCSHDRN 78 (361)
T ss_pred eeeeec-------CCCceE----EeccCCceEEEEEecCCCCceeceehh----hhCcceeEEeecCCCCceeEccCCCC
Confidence 999999 999999 999999999999987422223334433 58999999999999999999999999
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEE---
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL--- 538 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~--- 538 (790)
-.||....+.. |.+ ....-.++...+++.|+ .+.+++|+ ...|.||-++....-
T Consensus 79 ayVw~~~~~~~-------------Wkp-------tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 79 AYVWTQPSGGT-------------WKP-------TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS 138 (361)
T ss_pred ccccccCCCCe-------------ecc-------ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh
Confidence 99998743322 221 11112488999999999 88899999 678888877642211
Q ss_pred -EEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC-----C-------------CceEEEEcCCCCCEEEEEEeCCC
Q 003871 539 -ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-----T-------------KKTKAKLKGHQNRITCLAYSLSL 598 (790)
Q Consensus 539 -~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~-----~-------------~~~~~~l~~h~~~v~~l~~spdg 598 (790)
..-+.+...|++++|+|++ ++++|+.|+..+++..- . |+.+..+....+.|..+.|+|+|
T Consensus 139 KhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG 218 (361)
T KOG1523|consen 139 KHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG 218 (361)
T ss_pred hhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC
Confidence 1123456779999999999 99999999999988642 1 12233343456789999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeC
Q 003871 599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE 657 (790)
Q Consensus 599 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~d 657 (790)
+.|+-.+.|.++.+-|...... .++++...+- +..++.|-.+...+++|.|
T Consensus 219 ~~lawv~Hds~v~~~da~~p~~----~v~~~~~~~l----P~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 219 NRLAWVGHDSTVSFVDAAGPSE----RVQSVATAQL----PLLSVSWISENSVVAAGYD 269 (361)
T ss_pred CEeeEecCCCceEEeecCCCch----hccchhhccC----CceeeEeecCCceeecCCC
Confidence 9999999999999999876431 1222222222 5666666555544444433
No 219
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.56 E-value=1.1e-12 Score=147.33 Aligned_cols=256 Identities=13% Similarity=0.094 Sum_probs=179.3
Q ss_pred CCCCCeEEEEec---CcEEEEec-CCeEEEEECCC-------CcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEE
Q 003871 504 DPKDSISCFALR---GSHLFSAS-GGKISIFSLET-------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVH 571 (790)
Q Consensus 504 ~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~-------~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iw 571 (790)
.|...|..++.+ +.++++|+ ||+|++|+... .+...++......+.++...+.+ .+|+|+.||.|.+.
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence 588888888888 58999999 89999999853 23344555556788999999999 99999999999999
Q ss_pred eCCCC--c-----eEEEEcCC-CCCEEE-EEEeC-CCC-EEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCe
Q 003871 572 CPCTK--K-----TKAKLKGH-QNRITC-LAYSL-SLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 640 (790)
Q Consensus 572 d~~~~--~-----~~~~l~~h-~~~v~~-l~~sp-dg~-~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v 640 (790)
+++.. . .......+ .+.+.+ -+|.. ++. .++.+..-+.|..||+++..... .++ ....| +.|
T Consensus 1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w--~lk-~~~~h----G~v 1198 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW--RLK-NQLRH----GLV 1198 (1431)
T ss_pred EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH--hhh-cCccc----cce
Confidence 88752 1 11111112 233333 34433 333 68888889999999999833221 122 22223 689
Q ss_pred EEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecC---CCEEEEEE--cCCeEEEEECCCCeE
Q 003871 641 NHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD---GKCIYVSC--KSGHVKVFDTSTLEL 714 (790)
Q Consensus 641 ~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d---g~~l~sgs--~dg~i~vwd~~~~~~ 714 (790)
++++.+|.+.++++| ..|.+.+||++-+.++..+..+ +..++..++.+|- ..+.++++ ..+.|.+|++.+|..
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 999999999999998 7899999999999999888754 3588888888763 34555544 468899999999987
Q ss_pred EEEeccc-c------ccCCC--CcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccc
Q 003871 715 RCQINLT-A------YAQPG--TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 715 ~~~~~~~-~------~~~~g--h~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
..++... . ..|.. ...+.+.....++.. .+.++.+|+.|+.||.||...++..
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeeccCCCcccc
Confidence 7776543 1 11110 001112222333433 4678999999999999999988755
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=2.2e-13 Score=140.29 Aligned_cols=243 Identities=15% Similarity=0.201 Sum_probs=163.0
Q ss_pred eEEEEec--CcEEEEecCCeEEEEECCCCcEE----E--EEcCCCCCeEEEEE-----cCCC-eEEEEeCCCcEEEEeCC
Q 003871 509 ISCFALR--GSHLFSASGGKISIFSLETFQTL----A--TFANPPPIATYFIL-----LPQD-LFAFGFDDSSILVHCPC 574 (790)
Q Consensus 509 V~~l~~s--~~~l~s~sdg~I~vwd~~~~~~~----~--~~~~~~~~v~~l~~-----s~~g-~l~sgs~dg~I~iwd~~ 574 (790)
+....++ |.+|+..-...+.+|+...+... . .+.+.. .+|-+| .|.+ -+.+|-.-|.|.+.|..
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~--P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTS--PTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCC--CceecccccccCCCCcceEEeeccCceEEecch
Confidence 3444444 66777766777888887643221 1 122211 123333 4667 88899999999999977
Q ss_pred CCceEEEEc----CCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceee-----------ceeeeeecc--CCCC-
Q 003871 575 TKKTKAKLK----GHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLC-----------SKFLHSFQT--GLVP- 635 (790)
Q Consensus 575 ~~~~~~~l~----~h~~~v~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~-----------~~~l~~~~~--~~~~- 635 (790)
..+..+.+. -.+..|+++.|-|. ...++.+-.+|.+++||..-.-... ...+.+-.. ...|
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 533222121 13468999999994 4566677789999999764210000 000000000 0000
Q ss_pred -----CCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 003871 636 -----ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 636 -----~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~ 709 (790)
..+.|..++|+|||++||+ +.||.++|||..+.+++..++. --+...|++|||||+||++|++|.-|.||.+
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS--YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS--YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh--hccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 1257889999999999998 7999999999988777655532 2577999999999999999999999999999
Q ss_pred CCCeEEEEeccccccCCCCcccccceEEEEEecC----------------------------------CC----------
Q 003871 710 STLELRCQINLTAYAQPGTISLELYPLVIAAHPL----------------------------------EP---------- 745 (790)
Q Consensus 710 ~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~----------------------------------d~---------- 745 (790)
..++.+..-. || ...|. .|+|.|- ++
T Consensus 362 ~erRVVARGq-------GH-kSWVs--~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~ 431 (636)
T KOG2394|consen 362 EERRVVARGQ-------GH-KSWVS--VVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRIN 431 (636)
T ss_pred ccceEEEecc-------cc-cccee--eEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccccccc
Confidence 9999888743 54 44455 8888720 01
Q ss_pred ---CEEEEEeCCCcEEEEecCCC
Q 003871 746 ---NRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 746 ---~~las~s~Dg~i~iW~~~~~ 765 (790)
-.+.++|.|..+.+||+...
T Consensus 432 ~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 432 SVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred ceEEEeecccccceEEEEecchh
Confidence 24788999999999998754
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.8e-12 Score=141.93 Aligned_cols=215 Identities=10% Similarity=0.026 Sum_probs=148.9
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeC---CCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCE
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 600 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~---dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~ 600 (790)
..|.++|.+ +...+.+..+...+.+.+|+||| .|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+|||+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 378899985 45556677778889999999999 7776653 458999999888653 45556667788999999998
Q ss_pred EE-EEeCCCc--EEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEe--C--CcEEEEECCCCceeee
Q 003871 601 LV-SSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--E--GQIDVYEAPTLNHTSQ 673 (790)
Q Consensus 601 l~-s~s~dg~--I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--d--g~I~iwd~~~~~~~~~ 673 (790)
|+ +.+.++. |++||+.+++. ..+.. +. .......|+|||+.++... + ..|+++|+.++... .
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~------~~Lt~-~~---~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~ 328 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT------TRLTD-SP---AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-R 328 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce------EEccC-CC---CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-E
Confidence 76 4555554 77789887542 11222 22 3466789999999988742 2 35899998766543 3
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEE
Q 003871 674 LVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 750 (790)
Q Consensus 674 ~~~~~h~~~v~~l~~s~dg~~l~sgs~d---g~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las 750 (790)
+.. +...+....|+|||++|+..+.+ ..|.+||+.++.. ..+.. + ..+. ..+|+| ||++|+.
T Consensus 329 lt~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~------~---~~~~--~p~~sp-DG~~i~~ 393 (435)
T PRK05137 329 ISF--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS------G---FLVE--GPTWAP-NGRVIMF 393 (435)
T ss_pred eec--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC------C---CCCC--CCeECC-CCCEEEE
Confidence 332 24456778999999999876643 3688999876653 23221 2 1234 789999 8998876
Q ss_pred EeCC------CcEEEEecCCCcc
Q 003871 751 GLTN------GRVHVIEPLESEV 767 (790)
Q Consensus 751 ~s~D------g~i~iW~~~~~~~ 767 (790)
.+.+ ..+++.++..++.
T Consensus 394 ~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 394 FRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEccCCCCCcceEEEEECCCCce
Confidence 6543 2577778766543
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.54 E-value=1.2e-12 Score=139.57 Aligned_cols=314 Identities=15% Similarity=0.132 Sum_probs=187.8
Q ss_pred CCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeec
Q 003871 342 NNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKL 421 (790)
Q Consensus 342 ~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~ 421 (790)
.++.+. +.|..+.+.+ .++......- ..+.|+ |||+++ ++++.||.|.++|+
T Consensus 14 ~~~~v~--viD~~t~~~~--------~~i~~~~~~h-------~~~~~s-------~Dgr~~----yv~~rdg~vsviD~ 65 (369)
T PF02239_consen 14 GSGSVA--VIDGATNKVV--------ARIPTGGAPH-------AGLKFS-------PDGRYL----YVANRDGTVSVIDL 65 (369)
T ss_dssp GGTEEE--EEETTT-SEE--------EEEE-STTEE-------EEEE-T-------T-SSEE----EEEETTSEEEEEET
T ss_pred CCCEEE--EEECCCCeEE--------EEEcCCCCce-------eEEEec-------CCCCEE----EEEcCCCeEEEEEC
Confidence 356777 8899888776 5555433222 356788 999999 88899999999999
Q ss_pred cccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC-CCcEEEEecCCCCccccccccccccccccCCCceeeeec
Q 003871 422 QLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTND 500 (790)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~-dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~ 500 (790)
.. .....++.. .....++++|+||++++++.. ++.+.++|..+.+. +-....+...
T Consensus 66 ~~---~~~v~~i~~-----G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~------------v~~I~~~~~~--- 122 (369)
T PF02239_consen 66 AT---GKVVATIKV-----GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP------------VKTIPTGGMP--- 122 (369)
T ss_dssp TS---SSEEEEEE------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E------------EEEEE--EE----
T ss_pred Cc---ccEEEEEec-----CCCcceEEEcCCCCEEEEEecCCCceeEeccccccc------------eeeccccccc---
Confidence 84 334445442 456789999999999998875 89999999877543 0000000000
Q ss_pred ccCCCCCCeEEEEec--Cc-EEEEecC-CeEEEEECCCCcEEE-EEcCCCCCeEEEEEcCCC-eEEE-EeCCCcEEEEeC
Q 003871 501 IAADPKDSISCFALR--GS-HLFSASG-GKISIFSLETFQTLA-TFANPPPIATYFILLPQD-LFAF-GFDDSSILVHCP 573 (790)
Q Consensus 501 ~~~~~~~~V~~l~~s--~~-~l~s~sd-g~I~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~g-~l~s-gs~dg~I~iwd~ 573 (790)
.......+.++..+ .. ++++--| +.|.+.|....+.+. +............|+|++ ++++ ...+..|-++|.
T Consensus 123 -~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 123 -VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp -TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred -ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEee
Confidence 00134566677666 44 4444444 889888987654332 222234556789999999 5554 456678999999
Q ss_pred CCCceEEEEc----CCCCCEEEEEEeCC----------CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCC
Q 003871 574 CTKKTKAKLK----GHQNRITCLAYSLS----------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 639 (790)
Q Consensus 574 ~~~~~~~~l~----~h~~~v~~l~~spd----------g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~ 639 (790)
.+++.+..+. .|..++..+ .+|. +...++.-....+.+||..+++. ++++.... ++
T Consensus 202 ~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv-----v~~I~~~G----~g 271 (369)
T PF02239_consen 202 KTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV-----VKTIPTQG----GG 271 (369)
T ss_dssp TTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE-----EEEEE-SS----SS
T ss_pred ccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeE-----EEEEECCC----Cc
Confidence 9988776553 244444433 2232 22222222223555677777543 33333321 23
Q ss_pred eEEEEEeCCCCEEEEE-----eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC--CeEEEEECCCC
Q 003871 640 VNHIQFHPDQIHLLSI-----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--GHVKVFDTSTL 712 (790)
Q Consensus 640 v~~i~~sp~~~~l~~~-----~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d--g~i~vwd~~~~ 712 (790)
.-+..+|+++++.+. ..++|.++|.++.+.+.++.... ...+..+.|++||+.+..+..+ +.|.+||..+.
T Consensus 272 -lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 272 -LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp ---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred -ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 778889999999985 34689999999998887775321 3459999999999977755544 47999999999
Q ss_pred eEEEEec
Q 003871 713 ELRCQIN 719 (790)
Q Consensus 713 ~~~~~~~ 719 (790)
+++.++.
T Consensus 350 ~~~~~i~ 356 (369)
T PF02239_consen 350 KEKKRIP 356 (369)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9998875
No 223
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=9.1e-12 Score=129.63 Aligned_cols=318 Identities=11% Similarity=0.137 Sum_probs=201.5
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
...++| ++|+++ |.+. ++.++|++... ........ ...+.++.|||.|++|.+--.
T Consensus 38 ~v~~~S-------~~G~lf----A~~~-~~~v~i~~~~~---~~~~lt~~------~~~~~~L~fSP~g~yL~T~e~--- 93 (566)
T KOG2315|consen 38 NVFAYS-------NNGRLF----AYSD-NQVVKVFEIAT---LKVVLCVE------LKKTYDLLFSPKGNYLLTWEP--- 93 (566)
T ss_pred eeEEEc-------CCCcEE----EEEc-CCeEEEEEccC---CcEEEEec------cceeeeeeecccccccccccc---
Confidence 566787 888887 5544 48899999863 12222222 238999999999998866211
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEec-CCeEEEEECCCCcEEEEEc
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA 542 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~ 542 (790)
--+|.-.+ ......++|+.+++..... +....+.. ++..|+ +..+++-- .+.+++|+..+.+.+.. .
T Consensus 94 ~~i~~~~~--------~~~pn~~v~~vet~~~~s~-~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-k 162 (566)
T KOG2315|consen 94 WAIYGPKN--------ASNPNVLVYNVETGVQRSQ-IQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-K 162 (566)
T ss_pred cccccCCC--------CCCCceeeeeeccceehhh-eehhhhcC-cccccccchhhhhhhhcceEEEEecCCccceee-e
Confidence 00110000 0011223444444322211 11112222 578888 55555444 78999999987443322 2
Q ss_pred CCCCCeEEEEEcCCC---eEEE-----EeCCCcEEEEeCCCCceEEEE--cC-CCCCEEEEEEeCCCCE-EEEEe--CC-
Q 003871 543 NPPPIATYFILLPQD---LFAF-----GFDDSSILVHCPCTKKTKAKL--KG-HQNRITCLAYSLSLNV-LVSSG--AD- 607 (790)
Q Consensus 543 ~~~~~v~~l~~s~~g---~l~s-----gs~dg~I~iwd~~~~~~~~~l--~~-h~~~v~~l~~spdg~~-l~s~s--~d- 607 (790)
-|...|+.+.+||.+ .+|+ ++.-+.|+||...-...-..+ +. ....-..+.|++-|.- |+.++ -|
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk 242 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK 242 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence 357789999999985 5553 344458999987632211111 10 1122335678876653 22222 23
Q ss_pred --------CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE--E-eCCcEEEEECCCCceeeeecC
Q 003871 608 --------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVP 676 (790)
Q Consensus 608 --------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~--~-~dg~I~iwd~~~~~~~~~~~~ 676 (790)
.++++.++++ .. ..+. +. .. ++|.++.|+|+|+.+++ | .-..+.|||++ +.++..+.
T Consensus 243 tn~SYYGEq~Lyll~t~g-~s---~~V~-L~--k~---GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~- 310 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQG-ES---VSVP-LL--KE---GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP- 310 (566)
T ss_pred CCccccccceEEEEEecC-ce---EEEe-cC--CC---CCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-
Confidence 3588888873 21 1222 22 22 79999999999999887 4 56789999996 77877773
Q ss_pred CCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeC
Q 003871 677 DKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 753 (790)
Q Consensus 677 ~~h~~~v~~l~~s~dg~~l~sgs~d---g~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~ 753 (790)
.++-.++-|+|.|++++.+|-+ |.+-|||+.+.+++..+... +.+-+.|+| ||.+++|++.
T Consensus 311 ---egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~------------~tt~~eW~P-dGe~flTATT 374 (566)
T KOG2315|consen 311 ---EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA------------NTTVFEWSP-DGEYFLTATT 374 (566)
T ss_pred ---CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC------------CceEEEEcC-CCcEEEEEec
Confidence 6788899999999999877764 89999999998888776532 134789999 8999998874
Q ss_pred ------CCcEEEEecCCC
Q 003871 754 ------NGRVHVIEPLES 765 (790)
Q Consensus 754 ------Dg~i~iW~~~~~ 765 (790)
|+.++||+....
T Consensus 375 aPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 375 APRLRVDNGIKIWHYTGS 392 (566)
T ss_pred cccEEecCCeEEEEecCc
Confidence 788999998643
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.53 E-value=1.4e-11 Score=119.53 Aligned_cols=216 Identities=13% Similarity=0.249 Sum_probs=156.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc-------ccc-----------------ccc-ccc---ccccccCCC
Q 003871 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-------SLE-----------------EEN-VNM---ESQLYQPSS 493 (790)
Q Consensus 442 ~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~-------~~g-----------------~~~-~~~---~~~i~~~~~ 493 (790)
....+++|+.|...++++..+| .+||+.+.-.. ..| ... ..+ ..-|||-..
T Consensus 6 ~~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred CceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 4456689999999888877666 89998875333 011 100 111 126898655
Q ss_pred ceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEEEECC-CCcEEEEEcCC--CCCeEEEEEcCCC-eEE-EEeCCCcE
Q 003871 494 KLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLE-TFQTLATFANP--PPIATYFILLPQD-LFA-FGFDDSSI 568 (790)
Q Consensus 494 ~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~-~~~~~~~~~~~--~~~v~~l~~s~~g-~l~-sgs~dg~I 568 (790)
.+++... ....+|.++.+....|++.-.+.|.+|... +.+.++.+... ..++.+++-+.+. .|| -|-.-|.|
T Consensus 85 ~~~i~el---~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 85 ERCIIEL---SFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred CcEEEEE---EeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 5554433 367899999999888888889999999997 45666666432 2334444333233 444 35567899
Q ss_pred EEEeCCCCce--EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCc-EEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEE
Q 003871 569 LVHCPCTKKT--KAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 645 (790)
Q Consensus 569 ~iwd~~~~~~--~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~-I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~ 645 (790)
.|-|+...+. ...+..|.+.|.+++.+-+|..+|++|..|+ |||||..+|+++ +.+..|... ..|.+++|
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l-----~E~RRG~d~--A~iy~iaF 234 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLL-----QELRRGVDR--ADIYCIAF 234 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEe-----eeeecCCch--heEEEEEe
Confidence 9999976554 4678889999999999999999999999998 799999997643 334444443 68999999
Q ss_pred eCCCCEEEEE-eCCcEEEEECCCC
Q 003871 646 HPDQIHLLSI-HEGQIDVYEAPTL 668 (790)
Q Consensus 646 sp~~~~l~~~-~dg~I~iwd~~~~ 668 (790)
||++.+||++ ..|+++|+.++..
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999995 7789999998753
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.5e-12 Score=140.19 Aligned_cols=234 Identities=12% Similarity=0.042 Sum_probs=149.0
Q ss_pred CceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCC-CcEEEEecCCCCccccccccccccccccCC
Q 003871 414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-ATHKLWKWQSNKQSLEEENVNMESQLYQPS 492 (790)
Q Consensus 414 ~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~d-g~i~vw~~~~~~~~~g~~~~~~~~~i~~~~ 492 (790)
..|.+||.+. ...+.+. .+...+.+.+|||||+.|+..+.. +.
T Consensus 179 ~~l~~~d~dg----~~~~~lt----~~~~~~~~p~wSPDG~~la~~s~~~g~---------------------------- 222 (429)
T PRK03629 179 YELRVSDYDG----YNQFVVH----RSPQPLMSPAWSPDGSKLAYVTFESGR---------------------------- 222 (429)
T ss_pred eeEEEEcCCC----CCCEEee----cCCCceeeeEEcCCCCEEEEEEecCCC----------------------------
Confidence 4688888863 3334433 256789999999999998876531 10
Q ss_pred CceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEE-eCCC--cE
Q 003871 493 SKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-FDDS--SI 568 (790)
Q Consensus 493 ~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg-s~dg--~I 568 (790)
..|.+|++.+++... +......+..++|+||| .|+.. +.+| .|
T Consensus 223 --------------------------------~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I 269 (429)
T PRK03629 223 --------------------------------SALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 269 (429)
T ss_pred --------------------------------cEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence 123345554443222 11222334568999999 66644 4455 59
Q ss_pred EEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCC-C--cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEE
Q 003871 569 LVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-A--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 645 (790)
Q Consensus 569 ~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d-g--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~ 645 (790)
++||+.+++... +..+...+....|+|||+.|+..+.+ + .|.++|+.+++. ..+. .. . .......|
T Consensus 270 ~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~---~~lt---~~-~---~~~~~~~~ 338 (429)
T PRK03629 270 YVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP---QRIT---WE-G---SQNQDADV 338 (429)
T ss_pred EEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe---EEee---cC-C---CCccCEEE
Confidence 999998876544 44444567889999999998877764 3 455557766432 1121 11 1 24567899
Q ss_pred eCCCCEEEE-Ee-C--CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe---EEEEECCCCeEEEEe
Q 003871 646 HPDQIHLLS-IH-E--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH---VKVFDTSTLELRCQI 718 (790)
Q Consensus 646 sp~~~~l~~-~~-d--g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~---i~vwd~~~~~~~~~~ 718 (790)
+|||++++. +. + ..|++||+.+++. ..+.. ........|+|||++|+.++.++. ++++++..+ ....+
T Consensus 339 SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~---~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~-~~~~l 413 (429)
T PRK03629 339 SSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTD---TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKARL 413 (429)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCC---CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC-CeEEC
Confidence 999999987 32 2 3589999988764 34432 122346789999999998887764 777887544 34444
Q ss_pred ccccccCCCCcccccceEEEEEec
Q 003871 719 NLTAYAQPGTISLELYPLVIAAHP 742 (790)
Q Consensus 719 ~~~~~~~~gh~~~~v~~~~v~~sp 742 (790)
. +| .+.+. ..+|+|
T Consensus 414 ~-------~~-~~~~~--~p~Wsp 427 (429)
T PRK03629 414 P-------AT-DGQVK--FPAWSP 427 (429)
T ss_pred c-------cC-CCCcC--CcccCC
Confidence 3 32 33455 788887
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3.7e-12 Score=140.08 Aligned_cols=213 Identities=12% Similarity=0.095 Sum_probs=143.9
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCE
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 600 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs---~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~ 600 (790)
..|.++|.+... .+.+..+...+.+.+|+||| .++..+ .+..|++||+.+|+... +....+.+..++|+|||+.
T Consensus 179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence 378899987543 34445566788999999999 776544 23479999998886432 2223334557899999998
Q ss_pred EEEE-eCCC--cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-e-CC--cEEEEECCCCceeee
Q 003871 601 LVSS-GADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H-EG--QIDVYEAPTLNHTSQ 673 (790)
Q Consensus 601 l~s~-s~dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~-dg--~I~iwd~~~~~~~~~ 673 (790)
|+.. +.++ .|++||+.+++.. + +..+. ..+....|+|||+.|+.. . ++ .|+++|+.++... .
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~-----~-lt~~~----~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~ 325 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIR-----Q-VTDGR----SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-R 325 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEE-----E-ccCCC----CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-E
Confidence 8865 3344 5899999885421 1 22222 357789999999988874 2 33 4666688766543 3
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEE
Q 003871 674 LVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 750 (790)
Q Consensus 674 ~~~~~h~~~v~~l~~s~dg~~l~sgs~d---g~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las 750 (790)
+.. +.......+|+|||++|+..+.+ ..|++||+.+++... +.. +. ... ..+|+| ||++|+.
T Consensus 326 lt~--~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~------~~---~~~--~p~~Sp-DG~~i~~ 390 (429)
T PRK03629 326 ITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD------TF---LDE--TPSIAP-NGTMVIY 390 (429)
T ss_pred eec--CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC------CC---CCC--CceECC-CCCEEEE
Confidence 332 23445678999999999876644 468999999887543 221 11 122 578999 8999999
Q ss_pred EeCCCc---EEEEecCCC
Q 003871 751 GLTNGR---VHVIEPLES 765 (790)
Q Consensus 751 ~s~Dg~---i~iW~~~~~ 765 (790)
++.++. +.++++..+
T Consensus 391 ~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 391 SSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EEcCCCceEEEEEECCCC
Confidence 988875 667776443
No 227
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=1.5e-10 Score=123.74 Aligned_cols=278 Identities=16% Similarity=0.152 Sum_probs=176.9
Q ss_pred CceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC----CCcEEEEecCCCCccccccccccccccc
Q 003871 414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----TATHKLWKWQSNKQSLEEENVNMESQLY 489 (790)
Q Consensus 414 ~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~----dg~i~vw~~~~~~~~~g~~~~~~~~~i~ 489 (790)
+.|.+|+++. +.+.+...... .-......++++|++++|+++.. ++.|..|.+...
T Consensus 13 ~gI~~~~~d~--~~g~l~~~~~~--~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~---------------- 72 (345)
T PF10282_consen 13 GGIYVFRFDE--ETGTLTLVQTV--AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD---------------- 72 (345)
T ss_dssp TEEEEEEEET--TTTEEEEEEEE--EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT----------------
T ss_pred CcEEEEEEcC--CCCCceEeeee--cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC----------------
Confidence 7899999953 23443322210 12455677899999999999987 468888876642
Q ss_pred cCCCceeeeecccCCCCCCeEEEEec--CcEEEEec--CCeEEEEECCC-CcEEEE---Ec----------CCCCCeEEE
Q 003871 490 QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLAT---FA----------NPPPIATYF 551 (790)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~~-~~~~~~---~~----------~~~~~v~~l 551 (790)
++.+...............++++ +++++++. +|.|.++++.. |..... +. .......++
T Consensus 73 ---~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v 149 (345)
T PF10282_consen 73 ---TGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV 149 (345)
T ss_dssp ---TTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred ---cceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence 12221111101134455678887 88888877 79999999986 443322 21 123457899
Q ss_pred EEcCCC-eEEEEe-CCCcEEEEeCCCCc--eE--EEEc-CCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECC--CCcee
Q 003871 552 ILLPQD-LFAFGF-DDSSILVHCPCTKK--TK--AKLK-GHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAV--GWKKL 621 (790)
Q Consensus 552 ~~s~~g-~l~sgs-~dg~I~iwd~~~~~--~~--~~l~-~h~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~--~~~~~ 621 (790)
.++|+| ++++.. ....|++|++.... .. ..+. ........++|+|+++++.+.. .+++|.++++. ++...
T Consensus 150 ~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~ 229 (345)
T PF10282_consen 150 VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT 229 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee
Confidence 999999 666554 34489999987654 32 2222 2345688999999999876654 57889999988 55443
Q ss_pred eceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEECC--CCce--eeeecCCCCCCCeEEEEEecCCCEE
Q 003871 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNH--TSQLVPDKMDLPITYATYSCDGKCI 695 (790)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~--~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l 695 (790)
....+..++.+... ......|+++|||++|+++ ..+.|.+|++. +++. +..+.. .....+.++++|+|++|
T Consensus 230 ~~~~~~~~~~~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 230 EIQTISTLPEGFTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYL 306 (345)
T ss_dssp EEEEEESCETTSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEE
T ss_pred EEEEeeeccccccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEE
Confidence 33334433332221 1257889999999999996 56789999983 3433 333332 24558999999999999
Q ss_pred EEEEc-CCeEEEEEC--CCCeEEEE
Q 003871 696 YVSCK-SGHVKVFDT--STLELRCQ 717 (790)
Q Consensus 696 ~sgs~-dg~i~vwd~--~~~~~~~~ 717 (790)
+++.. ++.|.+|++ .+|.+...
T Consensus 307 ~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 307 YVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEEecCCCeEEEEEEeCCCCcEEEe
Confidence 98874 578999876 57776554
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.9e-12 Score=140.58 Aligned_cols=213 Identities=17% Similarity=0.086 Sum_probs=145.2
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCE
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 600 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~d---g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~ 600 (790)
..|.+||.. +...+.+..+...+.+.+|+||| .|+..+.+ ..|++||+.+++.. .+..+.+...+++|+|||+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCE
Confidence 368899986 44455566677788999999999 77776643 36999999887653 33334445567899999998
Q ss_pred EE-EEeCCC--cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCC--cEEEEECCCCceeee
Q 003871 601 LV-SSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEG--QIDVYEAPTLNHTSQ 673 (790)
Q Consensus 601 l~-s~s~dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg--~I~iwd~~~~~~~~~ 673 (790)
++ +.+.++ .|++||+.+++.. . +.. +. ......+|+|||+.|+.+ .+| .|+++|+.+++...
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~---~---lt~-~~---~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~- 330 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT---R---LTN-HF---GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER- 330 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE---E---Ccc-CC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-
Confidence 76 445555 5999999886421 1 221 22 245678999999998874 333 38888887766433
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCC---eEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEE
Q 003871 674 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 750 (790)
Q Consensus 674 ~~~~~h~~~v~~l~~s~dg~~l~sgs~dg---~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las 750 (790)
+.. +.......+|+|||++|+..+.++ .|++||+.+++.. .+.. + . ... ..+|+| ||++++.
T Consensus 331 lt~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~------~--~-~~~--~p~~sp-dG~~i~~ 395 (433)
T PRK04922 331 LTF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP------G--S-LDE--SPSFAP-NGSMVLY 395 (433)
T ss_pred eec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC------C--C-CCC--CceECC-CCCEEEE
Confidence 322 133445789999999998765443 6999999988765 3321 2 1 223 578999 8998877
Q ss_pred EeCC---CcEEEEecCCC
Q 003871 751 GLTN---GRVHVIEPLES 765 (790)
Q Consensus 751 ~s~D---g~i~iW~~~~~ 765 (790)
.+.+ +.|.++++..+
T Consensus 396 ~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 396 ATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEecCCceEEEEEECCCC
Confidence 6653 35777777543
No 229
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1.8e-10 Score=114.65 Aligned_cols=280 Identities=11% Similarity=0.063 Sum_probs=183.9
Q ss_pred CCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCC---CcEEEEecCCCCccccccccccccccc
Q 003871 413 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLY 489 (790)
Q Consensus 413 d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~d---g~i~vw~~~~~~~~~g~~~~~~~~~i~ 489 (790)
++.|.+|+++.. .+......+ -.+.+.++-++|+|++++|.++..+ |.|..|.++
T Consensus 15 s~gI~v~~ld~~--~g~l~~~~~--v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD------------------ 72 (346)
T COG2706 15 SQGIYVFNLDTK--TGELSLLQL--VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID------------------ 72 (346)
T ss_pred CCceEEEEEeCc--ccccchhhh--ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc------------------
Confidence 578999999841 233222111 2367889999999999999998774 567766644
Q ss_pred cCCCceeeeecccCCCCCCeEEEEec--CcEEEEec--CCeEEEEECCC-CcEEEE--EcCCCCC----------eEEEE
Q 003871 490 QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLAT--FANPPPI----------ATYFI 552 (790)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~~-~~~~~~--~~~~~~~----------v~~l~ 552 (790)
..+|.+...-.......+.+.++++ |++++++. .|.|.++-+.. |..... ...|.+. +.+..
T Consensus 73 -~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 73 -PDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred -CCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence 3344432211111233444778888 88999988 69999999965 433221 1123333 78889
Q ss_pred EcCCC-eEEEEeC-CCcEEEEeCCCCceEEEEc---CCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCC--Cceeece
Q 003871 553 LLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCSK 624 (790)
Q Consensus 553 ~s~~g-~l~sgs~-dg~I~iwd~~~~~~~~~l~---~h~~~v~~l~~spdg~~l~s~s~-dg~I~vwd~~~--~~~~~~~ 624 (790)
+.|++ ++++..- --.|.+|++..|+....-. .-......|+|+|++++....++ +++|.+|.... ++....+
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence 99999 7766643 2379999999776432211 13345788999999999776654 89999999887 4544444
Q ss_pred eeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEECCC--CceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 003871 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT--LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 700 (790)
Q Consensus 625 ~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 700 (790)
.+.+++.+.. ...+..+|.++|||++|.++ ....|.+|.+.. +++...-....+....+.+.|+++|++|+++.+
T Consensus 232 ~i~tlP~dF~-g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 232 TIDTLPEDFT-GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred eeccCccccC-CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 4554555433 11467789999999999997 344788887653 332111111223556889999999999998887
Q ss_pred C-CeEEEEECC--CCeEEE
Q 003871 701 S-GHVKVFDTS--TLELRC 716 (790)
Q Consensus 701 d-g~i~vwd~~--~~~~~~ 716 (790)
+ ..|.+|.++ +|++-.
T Consensus 311 ~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 311 KSDNITVFERDKETGRLTL 329 (346)
T ss_pred CCCcEEEEEEcCCCceEEe
Confidence 6 568888765 565443
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=7.6e-12 Score=138.44 Aligned_cols=218 Identities=15% Similarity=0.083 Sum_probs=146.1
Q ss_pred CceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCC
Q 003871 414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 493 (790)
Q Consensus 414 ~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~ 493 (790)
..|.+||.+ ....+.+. .|...+.+.+|||||+.|+..+..+.
T Consensus 182 ~~l~~~d~d----g~~~~~lt----~~~~~v~~p~wSpDG~~lay~s~~~g----------------------------- 224 (435)
T PRK05137 182 KRLAIMDQD----GANVRYLT----DGSSLVLTPRFSPNRQEITYMSYANG----------------------------- 224 (435)
T ss_pred eEEEEECCC----CCCcEEEe----cCCCCeEeeEECCCCCEEEEEEecCC-----------------------------
Confidence 478888875 34444444 46778999999999999888764210
Q ss_pred ceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eE-EEEeCCC--cEE
Q 003871 494 KLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDS--SIL 569 (790)
Q Consensus 494 ~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l-~sgs~dg--~I~ 569 (790)
+..|.+||+.+++. ..+..+.+.+...+|+||| .+ ++.+.++ .|+
T Consensus 225 ------------------------------~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 225 ------------------------------RPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred ------------------------------CCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 11344555555543 2333445566788999999 55 4556565 488
Q ss_pred EEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeC-CC--cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEe
Q 003871 570 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 646 (790)
Q Consensus 570 iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~-dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~s 646 (790)
+||+.+++. ..+..+........|+|||+.|+..+. ++ .|+++|+.+++. .. +..+ . +.+....|+
T Consensus 274 ~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~---~~---lt~~-~---~~~~~~~~S 342 (435)
T PRK05137 274 TMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP---RR---ISFG-G---GRYSTPVWS 342 (435)
T ss_pred EEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe---EE---eecC-C---CcccCeEEC
Confidence 889987765 456556666778999999999887764 33 688889877442 11 2221 1 356678899
Q ss_pred CCCCEEEEE-e-C--CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC------CeEEEEECCCCeE
Q 003871 647 PDQIHLLSI-H-E--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS------GHVKVFDTSTLEL 714 (790)
Q Consensus 647 p~~~~l~~~-~-d--g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d------g~i~vwd~~~~~~ 714 (790)
|||+.|+.. . . ..|.+||+.++. ...+.. ...+..+.|+|||+.|+..+.+ ..++++|+.++..
T Consensus 343 pdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 343 PRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 999999874 2 2 358899986544 344432 2346788999999998765543 3688889877654
No 231
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.47 E-value=1.2e-13 Score=139.70 Aligned_cols=266 Identities=11% Similarity=0.163 Sum_probs=198.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCcee-eeeccCCCCCCceEEEEEcCCCCEEEEEeCCC
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA 463 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~-~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg 463 (790)
..+.|+ .+|+++ +.|+.-|.+--+|... ..++ .+. -...|.++.|-.+.+++|++ ...
T Consensus 133 Y~~~yt-------rnGrhl----llgGrKGHlAa~Dw~t----~~L~~Ei~-----v~Etv~Dv~~LHneq~~AVA-QK~ 191 (545)
T KOG1272|consen 133 YHLDYT-------RNGRHL----LLGGRKGHLAAFDWVT----KKLHFEIN-----VMETVRDVTFLHNEQFFAVA-QKK 191 (545)
T ss_pred eeeeec-------CCccEE----EecCCccceeeeeccc----ceeeeeee-----hhhhhhhhhhhcchHHHHhh-hhc
Confidence 466777 889999 9999999999999973 4332 222 25679999999988866655 457
Q ss_pred cEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcE-EEEec-CCeEEEEECCCCcEEEE
Q 003871 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH-LFSAS-GGKISIFSLETFQTLAT 540 (790)
Q Consensus 464 ~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~-l~s~s-dg~I~vwd~~~~~~~~~ 540 (790)
.+.|||-..... .|+ .....|..+.|- -.+ |++++ .|.++.-|+.+|+.+..
T Consensus 192 y~yvYD~~GtEl-------------------HCl------k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~ 246 (545)
T KOG1272|consen 192 YVYVYDNNGTEL-------------------HCL------KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS 246 (545)
T ss_pred eEEEecCCCcEE-------------------eeh------hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHH
Confidence 788887543211 021 134667778887 555 45555 69999999999999999
Q ss_pred EcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 003871 541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619 (790)
Q Consensus 541 ~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 619 (790)
+....+.+..++-+|-+ .+-+|...|+|.+|.....+++..+-.|.++|.++++.++|+++|+.+.|..++|||+++..
T Consensus 247 ~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 247 IRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred HHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 98888889999999999 99999999999999999998888888899999999999999999999999999999999833
Q ss_pred eeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEE-CCCC--ceeeeecCCCCCCCeEEEEEecCCCEEE
Q 003871 620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE-APTL--NHTSQLVPDKMDLPITYATYSCDGKCIY 696 (790)
Q Consensus 620 ~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd-~~~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 696 (790)
.+.+.... .+...++||..| .||.|....|.||. .-.+ ..-..+..+...++|..+.|.|-...|.
T Consensus 327 -----ql~t~~tp-----~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLG 395 (545)
T KOG1272|consen 327 -----QLHTYRTP-----HPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLG 395 (545)
T ss_pred -----ccceeecC-----CCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeee
Confidence 22222222 357788888765 67777777899995 2221 1112222222256899999999888877
Q ss_pred EEEcCCeEEEE
Q 003871 697 VSCKSGHVKVF 707 (790)
Q Consensus 697 sgs~dg~i~vw 707 (790)
.|...|.-.+.
T Consensus 396 IGH~~G~tsil 406 (545)
T KOG1272|consen 396 IGHAGGITSIL 406 (545)
T ss_pred ccccCCceeEe
Confidence 77665544433
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.47 E-value=3.3e-12 Score=123.66 Aligned_cols=150 Identities=11% Similarity=0.137 Sum_probs=108.2
Q ss_pred EEEEEeCCCCEEEEEeC---C-------CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE--E-e
Q 003871 590 TCLAYSLSLNVLVSSGA---D-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-H 656 (790)
Q Consensus 590 ~~l~~spdg~~l~s~s~---d-------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~--~-~ 656 (790)
..+.|+|+|++|+.-.. | +...+|.++... .+...+..... ++|.+++|+|+|..+++ | .
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~----~~~~~i~l~~~---~~I~~~~WsP~g~~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN----IPVESIELKKE---GPIHDVAWSPNGNEFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC----CccceeeccCC---CceEEEEECcCCCEEEEEEccC
Confidence 45789999988665332 1 234455543311 12222222222 57999999999999876 3 5
Q ss_pred CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEeccccccCCCCccccc
Q 003871 657 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLEL 733 (790)
Q Consensus 657 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d---g~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v 733 (790)
++.|.+||++ ++.+..+. ...+..+.|||+|++|++|+.+ |.|.+||.++.+.+.... | . .
T Consensus 82 ~~~v~lyd~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--------~-~-~- 145 (194)
T PF08662_consen 82 PAKVTLYDVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--------H-S-D- 145 (194)
T ss_pred CcccEEEcCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--------c-C-c-
Confidence 6789999996 77777763 5678899999999999998754 679999999888877653 2 2 2
Q ss_pred ceEEEEEecCCCCEEEEEeC------CCcEEEEecCC
Q 003871 734 YPLVIAAHPLEPNRIALGLT------NGRVHVIEPLE 764 (790)
Q Consensus 734 ~~~~v~~sp~d~~~las~s~------Dg~i~iW~~~~ 764 (790)
+..++|+| ||++|++++. |+.++||+...
T Consensus 146 -~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 146 -ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred -EEEEEEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence 44899999 8999998874 78999999853
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=6.3e-12 Score=138.87 Aligned_cols=233 Identities=14% Similarity=0.066 Sum_probs=148.0
Q ss_pred eeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccC---CCceEeeeccc
Q 003871 347 SLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKS---LEKSVNLKLQL 423 (790)
Q Consensus 347 ~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~---d~~i~iwd~~~ 423 (790)
.||+||...+.. +.+..|...+ .+.+|+ |||+.+ +..+. +..|.+||+.
T Consensus 185 ~l~i~D~~g~~~---------~~lt~~~~~v-------~~p~wS-------pDg~~l----a~~s~~~~~~~l~~~dl~- 236 (433)
T PRK04922 185 ALQVADSDGYNP---------QTILRSAEPI-------LSPAWS-------PDGKKL----AYVSFERGRSAIYVQDLA- 236 (433)
T ss_pred EEEEECCCCCCc---------eEeecCCCcc-------ccccCC-------CCCCEE----EEEecCCCCcEEEEEECC-
Confidence 455999854433 5566677777 899999 999998 65553 3469999996
Q ss_pred cCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEecCCCCccccccccccccccccCCCceeeeeccc
Q 003871 424 INEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL-TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA 502 (790)
Q Consensus 424 ~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~-~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~ 502 (790)
++....+. .+.+...+.+|+|||+.++.. +.+|.-
T Consensus 237 ---~g~~~~l~----~~~g~~~~~~~SpDG~~l~~~~s~~g~~------------------------------------- 272 (433)
T PRK04922 237 ---TGQRELVA----SFRGINGAPSFSPDGRRLALTLSRDGNP------------------------------------- 272 (433)
T ss_pred ---CCCEEEec----cCCCCccCceECCCCCEEEEEEeCCCCc-------------------------------------
Confidence 34444433 233445578999999987654 334321
Q ss_pred CCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeC-CC--cEEEEeCCCCce
Q 003871 503 ADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKT 578 (790)
Q Consensus 503 ~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~-dg--~I~iwd~~~~~~ 578 (790)
.|.+||+.+++. ..+..+.......+|+||| .++.++. +| .|+++|+.+++.
T Consensus 273 -----------------------~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 273 -----------------------EIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred -----------------------eEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 233455554443 2333344444678999999 7766653 44 477778877654
Q ss_pred EEEEcCCCCCEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE
Q 003871 579 KAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 655 (790)
Q Consensus 579 ~~~l~~h~~~v~~l~~spdg~~l~s~s~dg---~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~ 655 (790)
. .+..+......++|+|||++|+..+.++ .|.+||+.+++.. . +..+ .......|+|||++++..
T Consensus 329 ~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~---~---Lt~~-----~~~~~p~~spdG~~i~~~ 396 (433)
T PRK04922 329 E-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR---T---LTPG-----SLDESPSFAPNGSMVLYA 396 (433)
T ss_pred E-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE---E---CCCC-----CCCCCceECCCCCEEEEE
Confidence 3 3322333455789999999998765443 5999999875422 1 2222 123457899999988873
Q ss_pred -e---CCcEEEEECCCCceeeeecCCCCCCCeEEEEEec
Q 003871 656 -H---EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 690 (790)
Q Consensus 656 -~---dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~ 690 (790)
. .+.++++++. +.....+.. +.+.+...+|+|
T Consensus 397 s~~~g~~~L~~~~~~-g~~~~~l~~--~~g~~~~p~wsp 432 (433)
T PRK04922 397 TREGGRGVLAAVSTD-GRVRQRLVS--ADGEVREPAWSP 432 (433)
T ss_pred EecCCceEEEEEECC-CCceEEccc--CCCCCCCCccCC
Confidence 2 2458889985 444455532 245677778876
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.9e-11 Score=134.56 Aligned_cols=203 Identities=17% Similarity=0.099 Sum_probs=134.7
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCE
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 600 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~d---g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~ 600 (790)
..|.++|.. +...+.+..+...+.+.+|+||| .|+..+.+ ..|++||+.+++.. .+....+.+.+.+|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCE
Confidence 467788874 55555566677788999999999 77766643 36999999988654 33334455678999999998
Q ss_pred EE-EEeCCCcEEEEE--CCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E-eCCc--EEEEECCCCceeee
Q 003871 601 LV-SSGADAQLCVWD--AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQ--IDVYEAPTLNHTSQ 673 (790)
Q Consensus 601 l~-s~s~dg~I~vwd--~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~--I~iwd~~~~~~~~~ 673 (790)
|+ +.+.++...+|. +.++. +..+.. +. +......|+|||+.|+. + .++. |+++++.++....
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~------~~~lt~-~~---~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~- 322 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG------LRRLTQ-SS---GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR- 322 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC------cEECCC-CC---CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-
Confidence 87 456777766665 44432 221222 22 34567889999999886 4 3344 4455555554332
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCC---eEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEE
Q 003871 674 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 750 (790)
Q Consensus 674 ~~~~~h~~~v~~l~~s~dg~~l~sgs~dg---~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las 750 (790)
+... .......+|||||++|+..+.++ .|++||+.+++...... + .... ..+|+| ||++|+.
T Consensus 323 lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-------~---~~~~--~p~~sp-dg~~l~~ 387 (427)
T PRK02889 323 VTFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-------T---TRDE--SPSFAP-NGRYILY 387 (427)
T ss_pred EecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-------C---CCcc--CceECC-CCCEEEE
Confidence 2221 23344678999999998777654 69999999887543321 1 1223 679999 8998887
Q ss_pred EeCCC
Q 003871 751 GLTNG 755 (790)
Q Consensus 751 ~s~Dg 755 (790)
++.++
T Consensus 388 ~~~~~ 392 (427)
T PRK02889 388 ATQQG 392 (427)
T ss_pred EEecC
Confidence 77554
No 235
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.46 E-value=7.2e-11 Score=121.50 Aligned_cols=326 Identities=9% Similarity=0.036 Sum_probs=209.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
..++|| |.|++| ++... ..|.+|.-.. ...+.++. ...|..+.|||.++||.+-+....
T Consensus 36 ~~~~~S-------P~G~~l----~~~~~-~~V~~~~g~~---~~~l~~~~------~~~V~~~~fSP~~kYL~tw~~~pi 94 (561)
T COG5354 36 AYVSES-------PLGTYL----FSEHA-AGVECWGGPS---KAKLVRFR------HPDVKYLDFSPNEKYLVTWSREPI 94 (561)
T ss_pred hheeec-------Ccchhe----ehhhc-cceEEccccc---hhheeeee------cCCceecccCcccceeeeeccCCc
Confidence 788998 999999 77666 6788998864 45566654 356999999999999998776554
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeE-EEEec--CcEEEEecCCeEEEEECCCCcE-EEE
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALR--GSHLFSASGGKISIFSLETFQT-LAT 540 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~-~l~~s--~~~l~s~sdg~I~vwd~~~~~~-~~~ 540 (790)
+ +......+.+.. -.+.+||..+|.++............+ -+.|+ +.++|--....+.++++ ++.. ...
T Consensus 95 ~---~pe~e~sp~~~~---n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p 167 (561)
T COG5354 95 I---EPEIEISPFTSK---NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHP 167 (561)
T ss_pred c---ChhhccCCcccc---CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCc
Confidence 2 111000000000 034577777777655332111121133 46666 56655555778999997 3221 111
Q ss_pred EcC-CCCCeEEEEEcCCC---eEEE-----EeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEe------
Q 003871 541 FAN-PPPIATYFILLPQD---LFAF-----GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG------ 605 (790)
Q Consensus 541 ~~~-~~~~v~~l~~s~~g---~l~s-----gs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s------ 605 (790)
+.. ....+....|+|.| .|+. +..++.+++|.+..+..+..-.-....-..+.|++.|+++..--
T Consensus 168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 111 13568889999985 4443 45667899999987765543322222334678889888765321
Q ss_pred -----CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE--E-eCCcEEEEECCCCceeeeecCC
Q 003871 606 -----ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPD 677 (790)
Q Consensus 606 -----~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~--~-~dg~I~iwd~~~~~~~~~~~~~ 677 (790)
....+.++++... .+. +..+.. ++|...+|.|.++.+++ | .+..+.++|++.. .+..+.
T Consensus 248 nKsyfgesnLyl~~~~e~------~i~-V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P-- 314 (561)
T COG5354 248 NKSYFGESNLYLLRITER------SIP-VEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP-- 314 (561)
T ss_pred ccceeccceEEEEeeccc------ccc-eecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecC--
Confidence 1245778887742 222 111222 68999999999988887 3 6788999999754 444332
Q ss_pred CCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEE-EeccccccCCCCcccccceEEEEEecCCCCEEEEEe-
Q 003871 678 KMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL- 752 (790)
Q Consensus 678 ~h~~~v~~l~~s~dg~~l~sgs~d---g~i~vwd~~~~~~~~-~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s- 752 (790)
...-..+.|+|.+++++.++-| |.+-+||......+. .+. |. . ..-+.|+| |+.++.+..
T Consensus 315 --e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-------~~---n--~s~~~wsp-d~qF~~~~~t 379 (561)
T COG5354 315 --EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-------GL---N--TSYCDWSP-DGQFYDTDTT 379 (561)
T ss_pred --CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee-------cC---C--ceEeeccC-CceEEEecCC
Confidence 4556778899999999988766 789999988765443 443 21 1 22578999 898877664
Q ss_pred -----CCCcEEEEecCCCc
Q 003871 753 -----TNGRVHVIEPLESE 766 (790)
Q Consensus 753 -----~Dg~i~iW~~~~~~ 766 (790)
.|..|.||++....
T Consensus 380 s~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 380 SEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CcccccCcceEEEEecCch
Confidence 47889999987653
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.44 E-value=1.1e-11 Score=120.07 Aligned_cols=153 Identities=17% Similarity=0.199 Sum_probs=107.5
Q ss_pred EEEEEcCCC-eEE-EEeC--C-------CcEEEEeCCC-CceEEEEcC-CCCCEEEEEEeCCCCEEEEE--eCCCcEEEE
Q 003871 549 TYFILLPQD-LFA-FGFD--D-------SSILVHCPCT-KKTKAKLKG-HQNRITCLAYSLSLNVLVSS--GADAQLCVW 613 (790)
Q Consensus 549 ~~l~~s~~g-~l~-sgs~--d-------g~I~iwd~~~-~~~~~~l~~-h~~~v~~l~~spdg~~l~s~--s~dg~I~vw 613 (790)
..+.|+|+| .|+ .... | |...+|.++. +.....+.- ..++|.+++|+|+|+.+|+. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467899999 333 3221 1 2344444422 233444433 34579999999999987654 457899999
Q ss_pred ECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE----eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEe
Q 003871 614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 689 (790)
Q Consensus 614 d~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~----~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s 689 (790)
|++. ..+..+.. ..+..+.|+|+|++++++ ..|.|.+||.++.+.+.+.. ...++.++|+
T Consensus 89 d~~~------~~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws 152 (194)
T PF08662_consen 89 DVKG------KKIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS 152 (194)
T ss_pred cCcc------cEeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence 9974 33333332 467899999999999984 24679999999888877763 3457899999
Q ss_pred cCCCEEEEEEc------CCeEEEEECCCCeEEEEe
Q 003871 690 CDGKCIYVSCK------SGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 690 ~dg~~l~sgs~------dg~i~vwd~~~~~~~~~~ 718 (790)
|||+++++++. |+.++||+.. |+++...
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 99999998874 7889999985 5555543
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.1e-11 Score=123.43 Aligned_cols=250 Identities=13% Similarity=0.079 Sum_probs=175.6
Q ss_pred CCceEEEEEcCCCC--EEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcE
Q 003871 441 GGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH 518 (790)
Q Consensus 441 ~~~V~~l~~spdg~--~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~ 518 (790)
...|.+++|.-+++ .+...+.+..+....+..... .+.+|+..+- .....+|..++..+..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~---------~s~~~~~~~~--------~l~~~~I~gl~~~dg~ 117 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEI---------SSSLDDAKTV--------SLGTKSIKGLKLADGT 117 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCcc---------cccccccccc--------ccccccccchhhcCCE
Confidence 45677777776554 344444555555555444322 1122322211 1356777777777555
Q ss_pred EEEec-CCeEEEEECCCCc----EEEEEcCCCCCeEEEEEcCCC--eEEEEeCC--CcEEEEeCCCCceEEEEcCC----
Q 003871 519 LFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD--LFAFGFDD--SSILVHCPCTKKTKAKLKGH---- 585 (790)
Q Consensus 519 l~s~s-dg~I~vwd~~~~~----~~~~~~~~~~~v~~l~~s~~g--~l~sgs~d--g~I~iwd~~~~~~~~~l~~h---- 585 (790)
|++|- +|.+.+|..+.+. .+..+.. ..++..+.-++.. .+++|+.. ..+.+||+.+.+.+..-+.-
T Consensus 118 Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~ 196 (412)
T KOG3881|consen 118 LITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDR 196 (412)
T ss_pred EEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence 55555 8999999998442 2223332 2446666666666 77779988 78999999987554432221
Q ss_pred -----CCCEEEEEEeCC--CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eC
Q 003871 586 -----QNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 657 (790)
Q Consensus 586 -----~~~v~~l~~spd--g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d 657 (790)
.-.++++.|-|. ...+|+++.-+.+++||.+.++ +|+..+.-.. .+++++...|++.+++++ .-
T Consensus 197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----RPV~~fd~~E----~~is~~~l~p~gn~Iy~gn~~ 268 (412)
T KOG3881|consen 197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR----RPVAQFDFLE----NPISSTGLTPSGNFIYTGNTK 268 (412)
T ss_pred ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC----cceeEecccc----CcceeeeecCCCcEEEEeccc
Confidence 123567888886 7889999999999999999754 4554444333 489999999999999997 78
Q ss_pred CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003871 658 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 717 (790)
Q Consensus 658 g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~ 717 (790)
+.+..||++.++....... +..+.|+++..+|.+++++++|-|..|+|+|+++.+++..
T Consensus 269 g~l~~FD~r~~kl~g~~~k-g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 269 GQLAKFDLRGGKLLGCGLK-GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred chhheecccCceeeccccC-CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 9999999999988777332 2488999999999999999999999999999999766543
No 238
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.43 E-value=6.2e-12 Score=129.70 Aligned_cols=162 Identities=12% Similarity=0.124 Sum_probs=118.7
Q ss_pred EEEEec-CCeEEEEECCCCcEEEEEc----CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC--------------C
Q 003871 518 HLFSAS-GGKISIFSLETFQTLATFA----NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT--------------K 576 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~~~~~~~~~~----~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~--------------~ 576 (790)
-+..|- -|.|.+.|....+..+.+. -....|+|+.|-|.+ .++++-.+|.+++||..- +
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 344454 5788888765422222121 124679999999988 888888999999997531 1
Q ss_pred --------------ceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEE
Q 003871 577 --------------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH 642 (790)
Q Consensus 577 --------------~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 642 (790)
.++..+.--.+.|+..+|+|||++||+.+.||.+||||..+.++.. +....- +...|
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg------~mkSYF---GGLLC 337 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG------VMKSYF---GGLLC 337 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH------HHHhhc---cceEE
Confidence 1111222223578899999999999999999999999999843322 222222 58999
Q ss_pred EEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEec
Q 003871 643 IQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 690 (790)
Q Consensus 643 i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~ 690 (790)
++|||||++|++| .|.-|.||.+..++.+..- ++|...|..++|+|
T Consensus 338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG--qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG--QGHKSWVSVVAFDP 384 (636)
T ss_pred EEEcCCccEEEecCCcceEEEEEeccceEEEec--cccccceeeEeecc
Confidence 9999999999995 8999999999988888765 45899999999983
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.1e-11 Score=136.56 Aligned_cols=246 Identities=12% Similarity=0.052 Sum_probs=151.0
Q ss_pred ccccCCCCCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccC-
Q 003871 334 CINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKS- 412 (790)
Q Consensus 334 ~i~fspd~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~- 412 (790)
.++|... ..+.-.||++|. .|... +.+..+...+ .+.+|+ |||+.+ +..+.
T Consensus 165 ~iayv~~-~~~~~~L~~~D~-dG~~~--------~~l~~~~~~v-------~~p~wS-------PDG~~l----a~~s~~ 216 (427)
T PRK02889 165 RIAYVIK-TGNRYQLQISDA-DGQNA--------QSALSSPEPI-------ISPAWS-------PDGTKL----AYVSFE 216 (427)
T ss_pred EEEEEEc-cCCccEEEEECC-CCCCc--------eEeccCCCCc-------ccceEc-------CCCCEE----EEEEcc
Confidence 4444433 223445669998 44443 4455677777 899999 999998 65543
Q ss_pred --CCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEE-EeCCCcEEEEecCCCCccccccccccccccc
Q 003871 413 --LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA-LTQTATHKLWKWQSNKQSLEEENVNMESQLY 489 (790)
Q Consensus 413 --d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s-~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~ 489 (790)
...|.+||+. ++....+. ...+.+.+.+|||||+.|+. .+.++...+|.++
T Consensus 217 ~~~~~I~~~dl~----~g~~~~l~----~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d------------------ 270 (427)
T PRK02889 217 SKKPVVYVHDLA----TGRRRVVA----NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN------------------ 270 (427)
T ss_pred CCCcEEEEEECC----CCCEEEee----cCCCCccceEECCCCCEEEEEEccCCCceEEEEE------------------
Confidence 2459999997 35444433 12345678899999998875 4556666665432
Q ss_pred cCCCceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeC-CCc
Q 003871 490 QPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DSS 567 (790)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~-dg~ 567 (790)
..++. ...+..+........|+||| .++..+. +|.
T Consensus 271 ------------------------------------------~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~ 307 (427)
T PRK02889 271 ------------------------------------------ADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA 307 (427)
T ss_pred ------------------------------------------CCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCC
Confidence 22221 22333333344567899999 6665554 455
Q ss_pred EEEE--eCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCceeeceeeeeeccCCCCCCCCeEE
Q 003871 568 ILVH--CPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH 642 (790)
Q Consensus 568 I~iw--d~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg---~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 642 (790)
..+| +..++... .+..+.......+|+|||++|+..+.++ .|.+||+.+++.. . +..+ .....
T Consensus 308 ~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~---~---lt~~-----~~~~~ 375 (427)
T PRK02889 308 PQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT---A---LTDT-----TRDES 375 (427)
T ss_pred cEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE---E---ccCC-----CCccC
Confidence 5555 55555432 2222223345678999999999877654 5999999886421 1 2222 13456
Q ss_pred EEEeCCCCEEEEE-e-CC--cEEEEECCCCceeeeecCCCCCCCeEEEEEecC
Q 003871 643 IQFHPDQIHLLSI-H-EG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 691 (790)
Q Consensus 643 i~~sp~~~~l~~~-~-dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d 691 (790)
..|+|||+.|+.+ . .| .+++.++ ++.....+.. +.+.+...+|+|-
T Consensus 376 p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~--~~g~~~~p~wsp~ 425 (427)
T PRK02889 376 PSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSV--QGGDVREPSWGPF 425 (427)
T ss_pred ceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeec--CCCCCCCCccCCC
Confidence 8999999999874 2 22 3777777 4555555532 3566777888873
No 240
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=8.7e-12 Score=124.21 Aligned_cols=210 Identities=15% Similarity=0.134 Sum_probs=155.8
Q ss_pred eeccCCCceEeeeccccC-CCCceeeeeccCCCCCCceEEEEEcCCCCEEEE-EeCC--CcEEEEecCCCCccccccccc
Q 003871 408 VCAKSLEKSVNLKLQLIN-EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA-LTQT--ATHKLWKWQSNKQSLEEENVN 483 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~-~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s-~~~d--g~i~vw~~~~~~~~~g~~~~~ 483 (790)
++|-.+|.+.+|.....- .......+. -...+..+.-++..+++++ ||.. ..+.+||++....
T Consensus 119 itc~~sG~l~~~~~k~~d~hss~l~~la-----~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q-------- 185 (412)
T KOG3881|consen 119 ITCVSSGNLQVRHDKSGDLHSSKLIKLA-----TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ-------- 185 (412)
T ss_pred EEEecCCcEEEEeccCCccccccceeee-----cCCceeeeccCCCCCceEecCchhcccceeeeeccccee--------
Confidence 788899999999986311 012222222 2356777777776666655 7777 7899999987543
Q ss_pred cccccccCCCce--eeeecccCCCCCCeEEEEec-C---cEEEEec-CCeEEEEECCCC-cEEEEEcCCCCCeEEEEEcC
Q 003871 484 MESQLYQPSSKL--VMTNDIAADPKDSISCFALR-G---SHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFILLP 555 (790)
Q Consensus 484 ~~~~i~~~~~~~--~~~~~~~~~~~~~V~~l~~s-~---~~l~s~s-dg~I~vwd~~~~-~~~~~~~~~~~~v~~l~~s~ 555 (790)
+|....-. .+.. .-.-.++++.|- + ..++++. -+.+++||...+ +++..+.-...+++++...|
T Consensus 186 ----iw~aKNvpnD~L~L----rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p 257 (412)
T KOG3881|consen 186 ----IWSAKNVPNDRLGL----RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP 257 (412)
T ss_pred ----eeeccCCCCccccc----eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC
Confidence 55543221 1100 123455677777 4 5688888 799999999865 57788887788999999999
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCceEEE-EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCC
Q 003871 556 QD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 633 (790)
Q Consensus 556 ~g-~l~sgs~dg~I~iwd~~~~~~~~~-l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 633 (790)
++ .+++|..-|.+..+|+++++.... +.+-++.|+++..+|.++++++|+-|+.+||+|+++.+.+....+.
T Consensus 258 ~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK------ 331 (412)
T KOG3881|consen 258 SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK------ 331 (412)
T ss_pred CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh------
Confidence 99 999999999999999999988776 8889999999999999999999999999999999995443332222
Q ss_pred CCCCCCeEEEEEeCC
Q 003871 634 VPETTIVNHIQFHPD 648 (790)
Q Consensus 634 ~~~~~~v~~i~~sp~ 648 (790)
..++++.+.++
T Consensus 332 ----s~lt~il~~~~ 342 (412)
T KOG3881|consen 332 ----SRLTFILLRDD 342 (412)
T ss_pred ----ccccEEEecCC
Confidence 45777777654
No 241
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.2e-12 Score=134.92 Aligned_cols=215 Identities=12% Similarity=0.091 Sum_probs=152.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
..|.||.+.| +|+.|+ .||.+| ++||.|..+.|||.-. .+..+.+. .||...|.++
T Consensus 44 ~eL~GH~GCV-------N~LeWn-------~dG~lL----~SGSDD~r~ivWd~~~---~KllhsI~---TgHtaNIFsv 99 (758)
T KOG1310|consen 44 AELTGHTGCV-------NCLEWN-------ADGELL----ASGSDDTRLIVWDPFE---YKLLHSIS---TGHTANIFSV 99 (758)
T ss_pred hhhcccccee-------cceeec-------CCCCEE----eecCCcceEEeecchh---cceeeeee---cccccceeEE
Confidence 7889999999 999999 999999 9999999999999963 34444443 5899999999
Q ss_pred EEcC--CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C-cEEEEe
Q 003871 448 IYSH--SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSA 522 (790)
Q Consensus 448 ~~sp--dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~-~~l~s~ 522 (790)
+|-| +.+.+++|+.|..|+++|+...+. |.. ..|-..+......|...|..++.. + +.+.++
T Consensus 100 KFvP~tnnriv~sgAgDk~i~lfdl~~~~~--~~~-----------d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsa 166 (758)
T KOG1310|consen 100 KFVPYTNNRIVLSGAGDKLIKLFDLDSSKE--GGM-----------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSA 166 (758)
T ss_pred eeeccCCCeEEEeccCcceEEEEecccccc--ccc-----------ccCccchhhhhhhhhhhhhheecCCCCCceEEEe
Confidence 9998 456788899999999999986333 100 011111111122477777777777 3 678888
Q ss_pred c-CCeEEEEECCCCcEE-------E---EEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC--------Cc----
Q 003871 523 S-GGKISIFSLETFQTL-------A---TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT--------KK---- 577 (790)
Q Consensus 523 s-dg~I~vwd~~~~~~~-------~---~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~--------~~---- 577 (790)
+ ||+|+-+|++....- . .+...--...|+.++|.. +|++|+.|-..++||.+. +.
T Consensus 167 sEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~ 246 (758)
T KOG1310|consen 167 SEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTC 246 (758)
T ss_pred cCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCC
Confidence 8 999999999752211 1 111112245789999998 999999999999999431 11
Q ss_pred ------eEEEE-cCCC-----------CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 003871 578 ------TKAKL-KGHQ-----------NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619 (790)
Q Consensus 578 ------~~~~l-~~h~-----------~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 619 (790)
++..+ .+|. ..++-++|+|+|.-|+..-....|+++|+..++
T Consensus 247 pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 247 PPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred CCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 22222 2232 125668899999876665556689999987643
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=6.6e-11 Score=115.86 Aligned_cols=264 Identities=11% Similarity=0.100 Sum_probs=171.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCce--eeeecccCCCCCCeEEEEec---
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR--- 515 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~V~~l~~s--- 515 (790)
.+-|.++.|...|.+|++|..+|.|.++.-..... |.. .+. .-++...+. .+... .-...|..+.|.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~--~ey--~~~-t~fqshepEFDYLkSl---eieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK--GEY--NFQ-TEFQSHEPEFDYLKSL---EIEEKINKIRWLDDG 96 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccc--cce--eee-eeeeccCcccchhhhh---hhhhhhhhceecCCC
Confidence 56789999999999999999999999987543211 000 000 000000000 00000 134678888888
Q ss_pred --CcEEEEecCCeEEEEECCCCcE-----------------------------------EEEE-cCCCCCeEEEEEcCCC
Q 003871 516 --GSHLFSASGGKISIFSLETFQT-----------------------------------LATF-ANPPPIATYFILLPQD 557 (790)
Q Consensus 516 --~~~l~s~sdg~I~vwd~~~~~~-----------------------------------~~~~-~~~~~~v~~l~~s~~g 557 (790)
..+|+++.|.+|++|.+..... .+.+ ..|+..|.++.++.|+
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 4567777799999998753210 0111 2567778999999999
Q ss_pred -eEEEEeCCCcEEEEeCCCCce---EEEEcCC-----CCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcee-eceee
Q 003871 558 -LFAFGFDDSSILVHCPCTKKT---KAKLKGH-----QNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKL-CSKFL 626 (790)
Q Consensus 558 -~l~sgs~dg~I~iwd~~~~~~---~~~l~~h-----~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~-~~~~l 626 (790)
.++++ +|-.|.+|++.--.. +-.++.+ +.-|++..|+| ..+.++-.+..|+|++-|++...+- ....+
T Consensus 177 Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 177 ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 76665 577899999863321 2223333 24588899999 4678888999999999999852210 00001
Q ss_pred eeeccCCCC------CCCCeEEEEEeCCCCEEEEEeCCcEEEEEC-CCCceeeeecCCCC----------CC---CeEEE
Q 003871 627 HSFQTGLVP------ETTIVNHIQFHPDQIHLLSIHEGQIDVYEA-PTLNHTSQLVPDKM----------DL---PITYA 686 (790)
Q Consensus 627 ~~~~~~~~~------~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~-~~~~~~~~~~~~~h----------~~---~v~~l 686 (790)
...+....+ -...|..+.|+++|+++++-.--+|++||+ ...+++.++..+.. .. .-..+
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 001111000 114788899999999999876688999999 45667766654221 11 23467
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCe
Q 003871 687 TYSCDGKCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 687 ~~s~dg~~l~sgs~dg~i~vwd~~~~~ 713 (790)
+|+-++.+++||+..+.+++++...|.
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEcCCcceEecccccceEEEecCCCCc
Confidence 899999999999999999999976554
No 243
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.4e-10 Score=120.28 Aligned_cols=325 Identities=12% Similarity=0.092 Sum_probs=210.6
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCC--
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-- 462 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~d-- 462 (790)
+.+.|| |-|.|| +|--. .-|.+|--.. ...++++. | ..|.-+.|||+.+||++-+..
T Consensus 214 tyv~wS-------P~GTYL----~t~Hk-~GI~lWGG~~---f~r~~RF~-----H-p~Vq~idfSP~EkYLVT~s~~p~ 272 (698)
T KOG2314|consen 214 TYVRWS-------PKGTYL----VTFHK-QGIALWGGES---FDRIQRFY-----H-PGVQFIDFSPNEKYLVTYSPEPI 272 (698)
T ss_pred eeEEec-------CCceEE----EEEec-cceeeecCcc---HHHHHhcc-----C-CCceeeecCCccceEEEecCCcc
Confidence 678899 999999 88776 5578887653 66777754 3 458899999999999997752
Q ss_pred ---------CcEEEEecCCCCccccccccccccccccCCCceeeeeccc-CCCCCCeEEEEec--CcEEEEecCCeEEEE
Q 003871 463 ---------ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA-ADPKDSISCFALR--GSHLFSASGGKISIF 530 (790)
Q Consensus 463 ---------g~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~V~~l~~s--~~~l~s~sdg~I~vw 530 (790)
..++|||+.++.. ...... .+....-.-+.|| ++++|.-....|.||
T Consensus 273 ~~~~~d~e~~~l~IWDI~tG~l---------------------krsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIy 331 (698)
T KOG2314|consen 273 IVEEDDNEGQQLIIWDIATGLL---------------------KRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIY 331 (698)
T ss_pred ccCcccCCCceEEEEEccccch---------------------hcceeccCCCccccceEEeccCCceeEEeccceEEEE
Confidence 3566666665433 221111 0111112236777 778877778899999
Q ss_pred ECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEE
Q 003871 531 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS 604 (790)
Q Consensus 531 d~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~d-----g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~ 604 (790)
+.....++..-.-.-.+|....|+|.+ .||--+.. -.+.+-.+.+++.++.-.-|.-.=..+.|-.+|.+|+.-
T Consensus 332 Etpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 332 ETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred ecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEE
Confidence 987654443323335678899999999 66643322 256677777777766655554334456677788887642
Q ss_pred e----------CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE--E--eCCcEEEEECCC-C-
Q 003871 605 G----------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I--HEGQIDVYEAPT-L- 668 (790)
Q Consensus 605 s----------~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~--~--~dg~I~iwd~~~-~- 668 (790)
- .-..+.|+.++... .++..+.-. ..|...+|-|.|..+++ | ...++.+|.+++ .
T Consensus 412 vdR~tK~~~~g~f~n~eIfrireKd----Ipve~velk-----e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~ 482 (698)
T KOG2314|consen 412 VDRHTKSKVKGQFSNLEIFRIREKD----IPVEVVELK-----ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK 482 (698)
T ss_pred EEeeccccccceEeeEEEEEeeccC----CCceeeecc-----hheeeeeeccCCCeEEEEEccccccceeEEEeecCCC
Confidence 2 11234555555421 222212111 57999999999988887 3 345689998873 2
Q ss_pred --ceeeeecCCCCCCCeEEEEEecCCCEEEEEE---cCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecC
Q 003871 669 --NHTSQLVPDKMDLPITYATYSCDGKCIYVSC---KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 743 (790)
Q Consensus 669 --~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs---~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~ 743 (790)
+.+..+ .....+.+.|+|.|++++.+. ..|.+.++|+.-......-.+ -| . . ...+-|.|
T Consensus 483 ~~~lVk~~----dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~------eh-~-~--at~veWDP- 547 (698)
T KOG2314|consen 483 KPSLVKEL----DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP------EH-F-A--ATEVEWDP- 547 (698)
T ss_pred chhhhhhh----cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc------cc-c-c--cccceECC-
Confidence 223333 246688999999999988654 468999999885333222111 12 1 1 33788999
Q ss_pred CCCEEEEEeC------CCcEEEEecCCC-----------ccccccCCCC
Q 003871 744 EPNRIALGLT------NGRVHVIEPLES-----------EVEWGKLPFT 775 (790)
Q Consensus 744 d~~~las~s~------Dg~i~iW~~~~~-----------~~~w~~~~~~ 775 (790)
.|+|++|++. |..-+||+.+.+ +-.|.+.||.
T Consensus 548 tGRYvvT~ss~wrhk~d~GYri~tfqGrll~~~~i~~f~qF~WRPRPps 596 (698)
T KOG2314|consen 548 TGRYVVTSSSSWRHKVDNGYRIFTFQGRLLKEDIIDRFKQFLWRPRPPS 596 (698)
T ss_pred CCCEEEEeeehhhhccccceEEEEeecHHHHHHHHHHHHhhccCCCCCc
Confidence 8999999885 566788988764 3447776654
No 244
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.1e-10 Score=121.72 Aligned_cols=130 Identities=15% Similarity=0.216 Sum_probs=101.3
Q ss_pred CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEE--EeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEE
Q 003871 566 SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS--SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 643 (790)
Q Consensus 566 g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s--~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i 643 (790)
.++++++++...+.-.+. ..++|.++.|+|+|+-+++ |-.-..+.+||++. .++..+.. ++-+++
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~------~~v~df~e------gpRN~~ 317 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG------KPVFDFPE------GPRNTA 317 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC------CEeEeCCC------CCccce
Confidence 368888887434444443 4789999999999977554 55678899999997 45554555 467899
Q ss_pred EEeCCCCEEEE-E---eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc------CCeEEEEECCCC
Q 003871 644 QFHPDQIHLLS-I---HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTSTL 712 (790)
Q Consensus 644 ~~sp~~~~l~~-~---~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~------dg~i~vwd~~~~ 712 (790)
-|+|.|++++. | -.|.|-+||+.+.+++..+. ...-+-+.|+|||++++|++. |+.++||+....
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~----a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK----AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccchhhccccc----cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 99999999987 4 46889999999988888774 345677899999999998875 788999997643
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.36 E-value=2.6e-10 Score=126.18 Aligned_cols=210 Identities=16% Similarity=0.089 Sum_probs=142.0
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCE
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 600 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~d---g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~ 600 (790)
..|.++|... ...+.+..+...+.+.+|+||| .++.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+.
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 4688888763 4445555566678899999999 77766543 479999999886543 3335566778999999998
Q ss_pred EEE-EeCCC--cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCC--cEEEEECCCCceeee
Q 003871 601 LVS-SGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEG--QIDVYEAPTLNHTSQ 673 (790)
Q Consensus 601 l~s-~s~dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg--~I~iwd~~~~~~~~~ 673 (790)
|+. .+.++ .|++||+.++... . +.. +. .......|+|||+.|+.. .++ .|+++|+.+++.. .
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~---~---l~~-~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~ 316 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT---R---LTN-GP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-R 316 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE---E---CCC-CC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-E
Confidence 764 44443 5889999875421 1 222 11 234567899999988763 222 5888998876643 3
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCC---eEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEE
Q 003871 674 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 750 (790)
Q Consensus 674 ~~~~~h~~~v~~l~~s~dg~~l~sgs~dg---~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las 750 (790)
+.. +...+..+.|+|+|++++.++.++ .|++||+.++....... + . ... ..+|+| ||++|+.
T Consensus 317 l~~--~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-------~--~-~~~--~p~~sp-dg~~l~~ 381 (417)
T TIGR02800 317 LTF--RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-------T--G-LDE--SPSFAP-NGRMILY 381 (417)
T ss_pred eec--CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-------C--C-CCC--CceECC-CCCEEEE
Confidence 322 245677889999999999888776 89999998876433211 1 1 122 568999 8888877
Q ss_pred EeCCC---cEEEEec
Q 003871 751 GLTNG---RVHVIEP 762 (790)
Q Consensus 751 ~s~Dg---~i~iW~~ 762 (790)
++.++ .+++.+.
T Consensus 382 ~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 382 ATTRGGRGVLGLVST 396 (417)
T ss_pred EEeCCCcEEEEEEEC
Confidence 77654 3444443
No 246
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=4.9e-09 Score=112.13 Aligned_cols=243 Identities=15% Similarity=0.160 Sum_probs=156.1
Q ss_pred CCCeEEEEec--CcEEEEec-----CCeEEEEECCCC--c--EEEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCcEEEEe
Q 003871 506 KDSISCFALR--GSHLFSAS-----GGKISIFSLETF--Q--TLATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHC 572 (790)
Q Consensus 506 ~~~V~~l~~s--~~~l~s~s-----dg~I~vwd~~~~--~--~~~~~~~~~~~v~~l~~s~~g-~l~sgs-~dg~I~iwd 572 (790)
......++++ +++|.+.. ++.|..|++... + .+.+..........++++|++ +++++. .+|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 3445567776 77777665 368988888753 2 233333334456789999999 666665 588999999
Q ss_pred CCC-CceEEE---Ec----------CCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCc--eeeceeeeeeccCCCC
Q 003871 573 PCT-KKTKAK---LK----------GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWK--KLCSKFLHSFQTGLVP 635 (790)
Q Consensus 573 ~~~-~~~~~~---l~----------~h~~~v~~l~~spdg~~l~s~s~-dg~I~vwd~~~~~--~~~~~~l~~~~~~~~~ 635 (790)
+.. |..... +. .......++.++|||+++++... ...|.+|++.... ......+. ++.+
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~-~~~G--- 191 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK-VPPG--- 191 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE-CSTT---
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc-cccC---
Confidence 986 433222 21 11245789999999998877653 4579999997644 22222222 3333
Q ss_pred CCCCeEEEEEeCCCCEEEEE--eCCcEEEEECC--CCce--eeeecCC---C-CCCCeEEEEEecCCCEEEEEEc-CCeE
Q 003871 636 ETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNH--TSQLVPD---K-MDLPITYATYSCDGKCIYVSCK-SGHV 704 (790)
Q Consensus 636 ~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~--~~~~--~~~~~~~---~-h~~~v~~l~~s~dg~~l~sgs~-dg~i 704 (790)
...+.++|+|+++++++. .++.|.++++. ++.. +..+... . .......++++|||++|+++.. ++.|
T Consensus 192 --~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 192 --SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp --SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred --CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 568999999999999884 67889999987 4432 2222211 1 1236889999999999887664 6789
Q ss_pred EEEECC--CCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEe-CCCcEEEEecC
Q 003871 705 KVFDTS--TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPL 763 (790)
Q Consensus 705 ~vwd~~--~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s-~Dg~i~iW~~~ 763 (790)
.+|+++ +|++...-... .....+..++++| +|++|+++. .++.|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~--------~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVP--------TGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEE--------ESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEe--------CCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEe
Confidence 999993 45443221111 1112255999999 899888776 56799999874
No 247
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.33 E-value=1.8e-09 Score=110.05 Aligned_cols=145 Identities=14% Similarity=0.088 Sum_probs=109.7
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCC-cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEE
Q 003871 584 GHQNRITCLAYSLSLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 661 (790)
Q Consensus 584 ~h~~~v~~l~~spdg~~l~s~s~dg-~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~ 661 (790)
+|.+.|.-..+..+++-++.|..|| .+-++|.++++... +..+- +.|.++..+|+|++++++ ....+.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr------~e~~l----g~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR------IEKDL----GNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE------eeCCc----cceEEEEEcCCCcEEEEEcCceEEE
Confidence 4666677777777888889999998 89999999865221 22222 589999999999999997 556799
Q ss_pred EEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC----eEEEEECCCCeEEEEeccccccCCCCcccccceEE
Q 003871 662 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG----HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 737 (790)
Q Consensus 662 iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg----~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 737 (790)
++|+.+++....-. ...+-|+.++|+|+++++|-+--+| .|+++|+.+++......+. ++ -+ +
T Consensus 427 vididngnv~~idk--S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t-----a~----Df--s 493 (668)
T COG4946 427 VIDIDNGNVRLIDK--SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT-----AY----DF--S 493 (668)
T ss_pred EEEecCCCeeEecc--cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc-----cc----cc--C
Confidence 99999988643322 2367799999999999999877665 5899999999877665432 22 23 6
Q ss_pred EEEecCCCCEEEEEe
Q 003871 738 IAAHPLEPNRIALGL 752 (790)
Q Consensus 738 v~~sp~d~~~las~s 752 (790)
-+|.| |+++|.--+
T Consensus 494 PaFD~-d~ryLYfLs 507 (668)
T COG4946 494 PAFDP-DGRYLYFLS 507 (668)
T ss_pred cccCC-CCcEEEEEe
Confidence 78888 888876554
No 248
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.33 E-value=1.4e-10 Score=113.84 Aligned_cols=247 Identities=13% Similarity=0.138 Sum_probs=164.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCce-eeeeccCCCCCCceEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVR 446 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~-~~~~l~~~~h~~~V~~ 446 (790)
+.++||.+.+ +....- |-..-+ ++.+.|.++|||--.+ .++. ..+. +....++++
T Consensus 18 ~~~eG~~d~v-------n~~~l~-------~~e~gv----~~~s~drtvrv~lkrd---s~q~wpsI~---~~mP~~~~~ 73 (404)
T KOG1409|consen 18 SKIEGSQDDV-------NAAILI-------PKEEGV----ISVSEDRTVRVWLKRD---SGQYWPSIY---HYMPSPCSA 73 (404)
T ss_pred hhhcCchhhh-------hhheec-------cCCCCe----EEccccceeeeEEecc---ccccCchhh---hhCCCCceE
Confidence 7788998888 666555 556667 9999999999997653 2222 1111 224578999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-
Q 003871 447 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS- 523 (790)
Q Consensus 447 l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s- 523 (790)
+.+.++...|+.|-.+|++.-+.+...- +.....+.. ..|...|..+-|+ ...+++++
T Consensus 74 ~~y~~e~~~L~vg~~ngtvtefs~sedf-----------------nkm~~~r~~--~~h~~~v~~~if~~~~e~V~s~~~ 134 (404)
T KOG1409|consen 74 MEYVSESRRLYVGQDNGTVTEFALSEDF-----------------NKMTFLKDY--LAHQARVSAIVFSLTHEWVLSTGK 134 (404)
T ss_pred eeeeccceEEEEEEecceEEEEEhhhhh-----------------hhcchhhhh--hhhhcceeeEEecCCceeEEEecc
Confidence 9999999999999999998877654311 111111111 1689999999999 77788888
Q ss_pred CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeC--CCCceEEEEcCCCCCEEEEEEeCCCCEE
Q 003871 524 GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCP--CTKKTKAKLKGHQNRITCLAYSLSLNVL 601 (790)
Q Consensus 524 dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~--~~~~~~~~l~~h~~~v~~l~~spdg~~l 601 (790)
|..+.---.+.+..+..+.-.. ..+++.+.-. +...|...|.|....+ ..-.++..+.+|.+.+.++.|.|....+
T Consensus 135 dk~~~~hc~e~~~~lg~Y~~~~-~~t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~L 212 (404)
T KOG1409|consen 135 DKQFAWHCTESGNRLGGYNFET-PASALQFDAL-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLL 212 (404)
T ss_pred ccceEEEeeccCCcccceEeec-cCCCCceeeE-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEE
Confidence 6665444444444333221000 0011111000 3445555666555443 3346788899999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCC
Q 003871 602 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT 667 (790)
Q Consensus 602 ~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~ 667 (790)
.+|..|..+.+||+-.++.. .-...+|. ..|..+..-+.-+.+.+ +.||.|.+||...
T Consensus 213 fSg~~d~~vi~wdigg~~g~-----~~el~gh~---~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 213 FSGASDHSVIMWDIGGRKGT-----AYELQGHN---DKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EeccccCceEEEeccCCcce-----eeeeccch---hhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 99999999999999874322 11333555 57888777777777777 5999999999864
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=6.8e-10 Score=123.12 Aligned_cols=213 Identities=14% Similarity=0.024 Sum_probs=140.1
Q ss_pred eEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEE
Q 003871 526 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 601 (790)
Q Consensus 526 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~d---g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l 601 (790)
.|.++|.+.+. .+.+..+...+....|+||| .|+..+.+ ..|++||+.+++... +....+.+....|+|||+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 47788887443 45555567778999999999 77665543 369999999886533 33334445678999999988
Q ss_pred EE-EeCCC--cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eC--CcEEEEECCCCceeeee
Q 003871 602 VS-SGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE--GQIDVYEAPTLNHTSQL 674 (790)
Q Consensus 602 ~s-~s~dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~d--g~I~iwd~~~~~~~~~~ 674 (790)
+. .+.++ .|++||+.+++.. . +.. +. .......|+|||+.++.. .+ ..|+++|+.+++... +
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~---~---lt~-~~---~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-l 326 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS---R---VTN-HP---AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-V 326 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE---E---ccc-CC---CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e
Confidence 74 44444 5888899885421 1 222 21 345668899999988864 23 358888988777533 2
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEE
Q 003871 675 VPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 675 ~~~~h~~~v~~l~~s~dg~~l~sgs~d-g--~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~ 751 (790)
... ........|+|||++|+..+.+ + .|++||+.+++.... .. + . ... ..+|+| ||++++..
T Consensus 327 t~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~------~--~-~~~--~p~~sp-dg~~i~~~ 391 (430)
T PRK00178 327 TFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL-TD------T--S-LDE--SPSVAP-NGTMLIYA 391 (430)
T ss_pred ecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc-cC------C--C-CCC--CceECC-CCCEEEEE
Confidence 221 2234467899999999877653 3 588999998875332 21 1 1 112 458999 88888766
Q ss_pred eCC-C--cEEEEecCCCc
Q 003871 752 LTN-G--RVHVIEPLESE 766 (790)
Q Consensus 752 s~D-g--~i~iW~~~~~~ 766 (790)
+.+ | .|.++++..+.
T Consensus 392 ~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 392 TRQQGRGVLMLVSINGRV 409 (430)
T ss_pred EecCCceEEEEEECCCCc
Confidence 644 3 46677765433
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=3.8e-10 Score=123.66 Aligned_cols=245 Identities=13% Similarity=0.085 Sum_probs=146.2
Q ss_pred cceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCC--ceEeeecc
Q 003871 345 TISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLE--KSVNLKLQ 422 (790)
Q Consensus 345 ~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~--~i~iwd~~ 422 (790)
.-.||+.|...+.. +.+....... .+.+|| |||+.++. +++...++ .|.+.++.
T Consensus 164 ~~~l~~~d~dG~~~---------~~lt~~~~~~-------~sP~wS-------PDG~~~~~-~y~S~~~g~~~I~~~~l~ 219 (428)
T PRK01029 164 QGELWSVDYDGQNL---------RPLTQEHSLS-------ITPTWM-------HIGSGFPY-LYVSYKLGVPKIFLGSLE 219 (428)
T ss_pred cceEEEEcCCCCCc---------eEcccCCCCc-------ccceEc-------cCCCceEE-EEEEccCCCceEEEEECC
Confidence 34567999866654 4444444555 688999 99987411 12444444 46666665
Q ss_pred ccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC-CCcEEEEecCCCCccccccccccccccccCCCceeeeecc
Q 003871 423 LINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDI 501 (790)
Q Consensus 423 ~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~-dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~ 501 (790)
++...++. ...+.....+|||||+.|+..+. +|...+|
T Consensus 220 ----~g~~~~lt----~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~--------------------------------- 258 (428)
T PRK01029 220 ----NPAGKKIL----ALQGNQLMPTFSPRKKLLAFISDRYGNPDLF--------------------------------- 258 (428)
T ss_pred ----CCCceEee----cCCCCccceEECCCCCEEEEEECCCCCccee---------------------------------
Confidence 34444433 12344557899999999988764 2211111
Q ss_pred cCCCCCCeEEEEecCcEEEEecCCeEEEEECCC---CcEEEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCc--EEEEeCC
Q 003871 502 AADPKDSISCFALRGSHLFSASGGKISIFSLET---FQTLATFANPPPIATYFILLPQD-LFAFGF-DDSS--ILVHCPC 574 (790)
Q Consensus 502 ~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~---~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs-~dg~--I~iwd~~ 574 (790)
+..|++.+ ++...............+|+||| .|+..+ .+|. |+++++.
T Consensus 259 -------------------------~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 259 -------------------------IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred -------------------------EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 11222222 12222222222334567999999 666555 4564 5555554
Q ss_pred C-CceEEEEcCCCCCEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCC
Q 003871 575 T-KKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 650 (790)
Q Consensus 575 ~-~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d---g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~ 650 (790)
. +.....+..+...+....|+|||++|+..+.+ ..|.+||+.+++.. . +..+. ..+....|+|||+
T Consensus 314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~---~---Lt~~~----~~~~~p~wSpDG~ 383 (428)
T PRK01029 314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY---Q---LTTSP----ENKESPSWAIDSL 383 (428)
T ss_pred ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE---E---ccCCC----CCccceEECCCCC
Confidence 2 23344555555667789999999999876653 36999999986532 1 22221 2467789999999
Q ss_pred EEEE-E---eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC
Q 003871 651 HLLS-I---HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 692 (790)
Q Consensus 651 ~l~~-~---~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg 692 (790)
.|+. + ....|+++|+.+++...... ..+.+...+|+|-.
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~---~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITKKTRKIVI---GSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEEECCCCCceEEEEECCCCCEEEeec---CCCcccCceecCCC
Confidence 8886 3 23569999998776544332 24556778888753
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.6e-09 Score=119.83 Aligned_cols=169 Identities=15% Similarity=0.071 Sum_probs=106.3
Q ss_pred eEEEEEcCCC-eEE-EEeCCCc--EEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeC-CC--cEEEEECCCCce
Q 003871 548 ATYFILLPQD-LFA-FGFDDSS--ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKK 620 (790)
Q Consensus 548 v~~l~~s~~g-~l~-sgs~dg~--I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~-dg--~I~vwd~~~~~~ 620 (790)
....+|+||| .|+ +.+.+|. |+++|+.+++. ..+..+.......+|+|||+.|+..+. ++ .|.++|+.+++.
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 3467999999 555 4566664 88889887764 345445556678899999998877654 33 477778877542
Q ss_pred eeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCC--cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEE
Q 003871 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 696 (790)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 696 (790)
. .+. ..+ ......+|+|||++++.. .++ .|.++|+.+++.. .+... .......|+|||+.|+
T Consensus 343 ~---~Lt--~~g-----~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~ 408 (448)
T PRK04792 343 S---RLT--FEG-----EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVI 408 (448)
T ss_pred E---EEe--cCC-----CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEE
Confidence 1 121 112 123457899999999873 333 4677888877653 33221 1223458999999887
Q ss_pred EEEcC-C--eEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEec
Q 003871 697 VSCKS-G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 742 (790)
Q Consensus 697 sgs~d-g--~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 742 (790)
..+.+ + .+++++.. |.....+.. + .+.+. ..+|+|
T Consensus 409 ~~~~~~g~~~l~~~~~~-G~~~~~l~~-------~-~g~~~--~p~Wsp 446 (448)
T PRK04792 409 YSTTYQGKQVLAAVSID-GRFKARLPA-------G-QGEVK--SPAWSP 446 (448)
T ss_pred EEEecCCceEEEEEECC-CCceEECcC-------C-CCCcC--CCccCC
Confidence 65543 3 37788874 444444431 1 22344 677877
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.3e-09 Score=120.58 Aligned_cols=210 Identities=14% Similarity=0.102 Sum_probs=134.5
Q ss_pred eEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeC-CC--cEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEE
Q 003871 526 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 601 (790)
Q Consensus 526 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~-dg--~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l 601 (790)
.|.++|..... .+.+......+.+..|+||| .|+..+. ++ .|++||+.+++... +....+.....+|+|||+.|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 67777876443 34555567788899999999 7766543 33 68999998876532 32223334578999999988
Q ss_pred EE-EeCCCc--EEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eC--CcEEEEECCCCceeeee
Q 003871 602 VS-SGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE--GQIDVYEAPTLNHTSQL 674 (790)
Q Consensus 602 ~s-~s~dg~--I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~d--g~I~iwd~~~~~~~~~~ 674 (790)
+. .+.++. |+++|+.+++. ..+... . ......+|+|||+.++.. .+ ..|+++|+.+++... +
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~------~~lt~~-~---~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-L 345 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL------TRITRH-R---AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-L 345 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe------EECccC-C---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-E
Confidence 75 455664 77888887542 112222 1 345678999999998873 23 358888888776543 3
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEE
Q 003871 675 VPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 675 ~~~~h~~~v~~l~~s~dg~~l~sgs~d-g--~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~ 751 (790)
... .......+|+|||++|+..+.+ + .|.++|+.+++... +.. + . ... ..+|+| ||++|+..
T Consensus 346 t~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~------~--~-~d~--~ps~sp-dG~~I~~~ 410 (448)
T PRK04792 346 TFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS------T--R-LDE--SPSVAP-NGTMVIYS 410 (448)
T ss_pred ecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC------C--C-CCC--CceECC-CCCEEEEE
Confidence 211 2233457899999998876553 3 56778888887533 221 1 1 111 457999 78887665
Q ss_pred eC-CCc--EEEEecC
Q 003871 752 LT-NGR--VHVIEPL 763 (790)
Q Consensus 752 s~-Dg~--i~iW~~~ 763 (790)
+. +|. +++++..
T Consensus 411 ~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 411 TTYQGKQVLAAVSID 425 (448)
T ss_pred EecCCceEEEEEECC
Confidence 54 343 6666663
No 253
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.27 E-value=2.2e-09 Score=110.85 Aligned_cols=265 Identities=13% Similarity=0.094 Sum_probs=165.0
Q ss_pred CCCCcceeeeccCCCcccccccccCCCCCCCCCCCC--CCCCCCCCC-CCCCCCCCCCCCCCCCCCcccceeccCCCceE
Q 003871 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLD--ASSGDDSND-SSCFNDNNQSRESTSLPDADSAVCAKSLEKSV 417 (790)
Q Consensus 341 ~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~--v~~~~~~i~-~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~ 417 (790)
..++.+. +||..+|..+ ..+.+-..+ . | -+.|+ -|.++. |-- ....+.
T Consensus 105 ~~~n~~~--vwd~~sg~iv--------~sf~~~~q~~~~-------Wp~~k~s-------~~D~y~----ARv-v~~sl~ 155 (561)
T COG5354 105 TSKNNVF--VWDIASGMIV--------FSFNGISQPYLG-------WPVLKFS-------IDDKYV----ARV-VGSSLY 155 (561)
T ss_pred cccCcee--EEeccCceeE--------eeccccCCcccc-------cceeeee-------ecchhh----hhh-ccCeEE
Confidence 4556677 9999999887 566555444 3 5 67888 778877 333 335688
Q ss_pred eeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceee
Q 003871 418 NLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVM 497 (790)
Q Consensus 418 iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~ 497 (790)
|+++...-+......+. ...|....|+|.|+ ...+..|-.....
T Consensus 156 i~e~t~n~~~~p~~~lr------~~gi~dFsisP~~n-------~~~la~~tPEk~~----------------------- 199 (561)
T COG5354 156 IHEITDNIEEHPFKNLR------PVGILDFSISPEGN-------HDELAYWTPEKLN----------------------- 199 (561)
T ss_pred EEecCCccccCchhhcc------ccceeeEEecCCCC-------CceEEEEccccCC-----------------------
Confidence 99863211111122211 35688888998763 1224555433211
Q ss_pred eecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEE--E---------eCC
Q 003871 498 TNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAF--G---------FDD 565 (790)
Q Consensus 498 ~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~s--g---------s~d 565 (790)
..+.+++|.+..+..+.+-.-....-..+.|.+.| ++.. - -..
T Consensus 200 -------------------------kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfge 254 (561)
T COG5354 200 -------------------------KPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGE 254 (561)
T ss_pred -------------------------CCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceecc
Confidence 12345566655444444332222222456677777 2221 0 112
Q ss_pred CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEE--eCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEE
Q 003871 566 SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS--GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 643 (790)
Q Consensus 566 g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~--s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i 643 (790)
..++++++.... +....+-.++|...+|.|+++.+++. -.+..+.++|+++. ....++.. .=..+
T Consensus 255 snLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N------l~~~~Pe~------~rNT~ 321 (561)
T COG5354 255 SNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN------LRFYFPEQ------KRNTI 321 (561)
T ss_pred ceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc------eEEecCCc------ccccc
Confidence 468888887433 33333567899999999998876654 47889999999982 22213332 44678
Q ss_pred EEeCCCCEEEE-E---eCCcEEEEECCCCceee-eecCCCCCCCeEEEEEecCCCEEEEEE------cCCeEEEEECCCC
Q 003871 644 QFHPDQIHLLS-I---HEGQIDVYEAPTLNHTS-QLVPDKMDLPITYATYSCDGKCIYVSC------KSGHVKVFDTSTL 712 (790)
Q Consensus 644 ~~sp~~~~l~~-~---~dg~I~iwd~~~~~~~~-~~~~~~h~~~v~~l~~s~dg~~l~sgs------~dg~i~vwd~~~~ 712 (790)
.|+|.+++++. | ..|.+-+||......+. .+. ......+.|+|||+++.+.. .|..|.|||+...
T Consensus 322 ~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 322 FFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred cccCcccEEEEecCCccccceEEeccCCceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 89999999998 4 35779999997655444 442 34566778999999988764 3788999998754
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.6e-09 Score=120.14 Aligned_cols=215 Identities=13% Similarity=0.089 Sum_probs=136.0
Q ss_pred ceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCC-cEEEEecCCCCccccccccccccccccCCC
Q 003871 415 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA-THKLWKWQSNKQSLEEENVNMESQLYQPSS 493 (790)
Q Consensus 415 ~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg-~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~ 493 (790)
.+.++|.+. ...+.+. .+...+...+|||||++|+..+.++ .
T Consensus 180 ~l~~~d~~g----~~~~~l~----~~~~~~~~p~wSpDG~~la~~s~~~~~----------------------------- 222 (430)
T PRK00178 180 TLQRSDYDG----ARAVTLL----QSREPILSPRWSPDGKRIAYVSFEQKR----------------------------- 222 (430)
T ss_pred EEEEECCCC----CCceEEe----cCCCceeeeeECCCCCEEEEEEcCCCC-----------------------------
Confidence 466677752 3333333 3567889999999999998876532 1
Q ss_pred ceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCCC--cEE
Q 003871 494 KLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS--SIL 569 (790)
Q Consensus 494 ~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~-sgs~dg--~I~ 569 (790)
..|.+||+.+++... +....+.+....|+||| .++ +.+.+| .|+
T Consensus 223 -------------------------------~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 223 -------------------------------PRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred -------------------------------CEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 123345554443322 22223334568999999 665 455555 688
Q ss_pred EEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeC-CC--cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEe
Q 003871 570 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 646 (790)
Q Consensus 570 iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~-dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~s 646 (790)
+||+.+++.. .+..+........|+|||+.++..+. ++ .|+++|+.+++.. .+. . .+ .......|+
T Consensus 271 ~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~lt-~-~~-----~~~~~~~~S 339 (430)
T PRK00178 271 VMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---RVT-F-VG-----NYNARPRLS 339 (430)
T ss_pred EEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE---Eee-c-CC-----CCccceEEC
Confidence 8999887653 45555556677899999998877664 33 5777888775421 121 1 11 133457899
Q ss_pred CCCCEEEEE--eCC--cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCCe
Q 003871 647 PDQIHLLSI--HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLE 713 (790)
Q Consensus 647 p~~~~l~~~--~dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d---g~i~vwd~~~~~ 713 (790)
|+|+.++.. .++ .|.+||+.+++. ..+.. ........|+|||++++..+.+ ..++++++..+.
T Consensus 340 pdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~---~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 340 ADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD---TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV 409 (430)
T ss_pred CCCCEEEEEEccCCceEEEEEECCCCCE-EEccC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 999999874 233 488999988765 33332 1122356899999998876654 357777876443
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.5e-09 Score=118.89 Aligned_cols=221 Identities=11% Similarity=0.046 Sum_probs=137.6
Q ss_pred eEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-e--EE-EEeCCC--cEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCC
Q 003871 526 KISIFSLETFQTLATFANPPPIATYFILLPQD-L--FA-FGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 599 (790)
Q Consensus 526 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~--l~-sgs~dg--~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~ 599 (790)
.|.+.|.+.+. .+.+......+.+-+|+||| . ++ +...+| .|++.++.+|+.. .+....+.....+|+|||+
T Consensus 166 ~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCC
Confidence 57777776443 34455455566788999998 4 32 333343 6888899877543 3333444556789999999
Q ss_pred EEEEEeC-CC----cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E-eCCc--EEEEECCC-Cc
Q 003871 600 VLVSSGA-DA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQ--IDVYEAPT-LN 669 (790)
Q Consensus 600 ~l~s~s~-dg----~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~--I~iwd~~~-~~ 669 (790)
.|+..+. +| .+..|++.++.. ....+ +..+.. +.....+|+|||+.|+. + .+|. |+++++.. +.
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~--g~~~~-lt~~~~---~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAI--GKPRR-LLNEAF---GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCC--CcceE-eecCCC---CCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 9887653 22 344477665311 01111 222221 23467899999998887 3 3554 55556542 22
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCC
Q 003871 670 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 746 (790)
Q Consensus 670 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d---g~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 746 (790)
....+.. +...+....|||||++|+..+.+ ..|++||+.+++...... + ...+. ...|+| ||+
T Consensus 318 ~~~~lt~--~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-------~--~~~~~--~p~wSp-DG~ 383 (428)
T PRK01029 318 SPRLLTK--KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-------S--PENKE--SPSWAI-DSL 383 (428)
T ss_pred ceEEecc--CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-------C--CCCcc--ceEECC-CCC
Confidence 3333432 24566788999999998876543 479999999987654321 1 12334 789999 888
Q ss_pred EEEEEeC---CCcEEEEecCCCccc
Q 003871 747 RIALGLT---NGRVHVIEPLESEVE 768 (790)
Q Consensus 747 ~las~s~---Dg~i~iW~~~~~~~~ 768 (790)
+|+..+. ++.|++|++.+++..
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred EEEEEECCCCCceEEEEECCCCCEE
Confidence 8775443 346888898877643
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=1.4e-10 Score=129.11 Aligned_cols=186 Identities=11% Similarity=0.040 Sum_probs=145.0
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEEEcCCCC----CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCC
Q 003871 558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQN----RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 633 (790)
Q Consensus 558 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~----~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 633 (790)
.++.++.+..+.+||...+.....+..... ...-+.++++.-++++|+--+.|.+|+.... ..+. ...+|
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d----n~p~--~l~GH 174 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED----NKPI--RLKGH 174 (967)
T ss_pred eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc----CCcc--eeccc
Confidence 788888888999999887766555543211 1122344666678999999999999998731 1222 34577
Q ss_pred CCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003871 634 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 634 ~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
. +.|.++.++.||+++++ +.|.++++|++.+++... ...-+|...|..++|.|+ .++++++|.+.++|+....
T Consensus 175 e---G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~ 248 (967)
T KOG0974|consen 175 E---GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGT 248 (967)
T ss_pred C---CceEEEEEccCCcEEEEEecCcceeeeecccccccC-cccccccceeEEEEeccc--eeEEeccceEEEEEecccc
Confidence 7 89999999999999999 689999999999988766 222358999999999998 9999999999999976654
Q ss_pred eEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 713 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 713 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
++. .+. +|....++ .++.++ +...++|++.||.+++|+.....
T Consensus 249 ~l~-~y~-------~h~g~~iw--~~~~~~-~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 249 QLE-VYD-------EHSGKGIW--KIAVPI-GVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred eeh-hhh-------hhhhccee--EEEEcC-CceEEEeeccCcchhhhhhhccc
Confidence 433 444 66677788 888888 78899999999999999987653
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=4.9e-10 Score=124.99 Aligned_cols=184 Identities=14% Similarity=0.111 Sum_probs=144.4
Q ss_pred CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCe----EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCE
Q 003871 516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA----TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 589 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v----~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v 589 (790)
+..++.+. ++.+.+||...+............. .-+..+++. ++++|+--+.|.+|+....+....+.||.+.|
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i 178 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI 178 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence 55666666 8999999998776666654332211 122345666 99999999999999987444444689999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCC
Q 003871 590 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 668 (790)
Q Consensus 590 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~ 668 (790)
.++.++-||+++++.|+|+++|+|++++.+... ...-+|+ +.+..+.|+|+ .+++ +.|-+.++|+.. +
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgHs---aRvw~~~~~~n--~i~t~gedctcrvW~~~-~ 247 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-----CTGFGHS---ARVWACCFLPN--RIITVGEDCTCRVWGVN-G 247 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccC-----ccccccc---ceeEEEEeccc--eeEEeccceEEEEEecc-c
Confidence 999999999999999999999999999965332 1333566 79999999998 6666 799999999774 5
Q ss_pred ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 669 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 669 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
..+..+..+ ....+..++..++...++|++.|+.+++||+..
T Consensus 248 ~~l~~y~~h-~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 TQLEVYDEH-SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceehhhhhh-hhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 555566542 377899999999999999999999999999764
No 258
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.23 E-value=4e-08 Score=102.42 Aligned_cols=268 Identities=13% Similarity=0.099 Sum_probs=164.4
Q ss_pred CceEeeeccccCCCCce-eeeeccCCCCCCceEEEEEcCCCCEEEEEeC----------CCcEEEEecCCCCcccccccc
Q 003871 414 EKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATHKLWKWQSNKQSLEEENV 482 (790)
Q Consensus 414 ~~i~iwd~~~~~~~~~~-~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~----------dg~i~vw~~~~~~~~~g~~~~ 482 (790)
++|.+.|... .+. ..+.. |.... .+ +||||+.++++.. +..|.+||..+...
T Consensus 27 ~~v~ViD~~~----~~v~g~i~~---G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~------- 89 (352)
T TIGR02658 27 TQVYTIDGEA----GRVLGMTDG---GFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP------- 89 (352)
T ss_pred ceEEEEECCC----CEEEEEEEc---cCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-------
Confidence 8899999973 443 33332 22222 24 9999999888776 67899999887554
Q ss_pred ccccccccCCCceeeeecccCC----CCCCeEEEEec--CcEEEEec---CCeEEEEECCCCcEEEEEcCCCCCeEEEEE
Q 003871 483 NMESQLYQPSSKLVMTNDIAAD----PKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATYFIL 553 (790)
Q Consensus 483 ~~~~~i~~~~~~~~~~~~~~~~----~~~~V~~l~~s--~~~l~s~s---dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~ 553 (790)
.....+... .......++++ |+++++.. +..|.+.|+.+++.+..+.-... ..-...
T Consensus 90 -------------~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t 155 (352)
T TIGR02658 90 -------------IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPT 155 (352)
T ss_pred -------------EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEe
Confidence 100000000 11223356677 78877665 68999999999999998875332 122222
Q ss_pred cCCCeEEEEeCCCcEEEEeCC-CCceE----EEEcCCCCCEE-EEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceee
Q 003871 554 LPQDLFAFGFDDSSILVHCPC-TKKTK----AKLKGHQNRIT-CLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFL 626 (790)
Q Consensus 554 s~~g~l~sgs~dg~I~iwd~~-~~~~~----~~l~~h~~~v~-~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l 626 (790)
++++.. +-+.||......+. +|+.. ..+.+...++. .-.|.+ +|+++..... |+|.+.|+.+........+
T Consensus 156 ~e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~ 233 (352)
T TIGR02658 156 ANDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAI 233 (352)
T ss_pred cCCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceeccee
Confidence 222222 22234433332222 12211 11111001100 014456 8877776665 9999999765433223333
Q ss_pred eeecc-----CCCCCCCCeEEEEEeCCCCEEEEE-e--C--------CcEEEEECCCCceeeeecCCCCCCCeEEEEEec
Q 003871 627 HSFQT-----GLVPETTIVNHIQFHPDQIHLLSI-H--E--------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 690 (790)
Q Consensus 627 ~~~~~-----~~~~~~~~v~~i~~sp~~~~l~~~-~--d--------g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~ 690 (790)
..+.. +-.| +.+.-++++|+++.+++. . . +.|.++|..+++.+..+.. ...+..++++|
T Consensus 234 ~~~~~~~~~~~wrP--~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~ 308 (352)
T TIGR02658 234 EAFTEAEKADGWRP--GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQ 308 (352)
T ss_pred eeccccccccccCC--CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECC
Confidence 32211 1122 455569999999998873 1 2 4699999999999998865 56899999999
Q ss_pred CCC-EEEEEE-cCCeEEEEECCCCeEEEEec
Q 003871 691 DGK-CIYVSC-KSGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 691 dg~-~l~sgs-~dg~i~vwd~~~~~~~~~~~ 719 (790)
||+ +|++.. .++.|.++|..+++.+..+.
T Consensus 309 Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 309 DAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 999 777666 57889999999999988873
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.23 E-value=6.2e-10 Score=109.29 Aligned_cols=334 Identities=16% Similarity=0.160 Sum_probs=206.7
Q ss_pred hhhhhhhccCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCC-CCCCCCCCCCCCCCCCCCC
Q 003871 318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQ-EGRPLDASSGDDSNDSSCF 389 (790)
Q Consensus 318 ~~~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l-~~h~~~v~~~~~~i~~~~f 389 (790)
.+++.++||.+.+. ....-|. +.|.+++ ||-..+.-+.+ ..+ ...+.++ +++.+
T Consensus 15 ~ll~~~eG~~d~vn--~~~l~~~e~gv~~~s~drtvr--v~lkrds~q~w-------psI~~~mP~~~-------~~~~y 76 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVN--AAILIPKEEGVISVSEDRTVR--VWLKRDSGQYW-------PSIYHYMPSPC-------SAMEY 76 (404)
T ss_pred hhhhhhcCchhhhh--hheeccCCCCeEEccccceee--eEEeccccccC-------chhhhhCCCCc-------eEeee
Confidence 45677888888765 6555554 8899999 77544433322 222 1233444 78888
Q ss_pred CCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 003871 390 NDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 469 (790)
Q Consensus 390 s~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~ 469 (790)
. ++.+.| +.|-..|++.-+.+.+.-+.....+.. ..|...|..+.|+-....+++.+.|..+.---
T Consensus 77 ~-------~e~~~L----~vg~~ngtvtefs~sedfnkm~~~r~~---~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc 142 (404)
T KOG1409|consen 77 V-------SESRRL----YVGQDNGTVTEFALSEDFNKMTFLKDY---LAHQARVSAIVFSLTHEWVLSTGKDKQFAWHC 142 (404)
T ss_pred e-------ccceEE----EEEEecceEEEEEhhhhhhhcchhhhh---hhhhcceeeEEecCCceeEEEeccccceEEEe
Confidence 7 888888 999999999999886411111111111 35999999999999999999999998765322
Q ss_pred cCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEec-CCeEEEEEC--CCCcEEEEEcCCC
Q 003871 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSL--ETFQTLATFANPP 545 (790)
Q Consensus 470 ~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd~--~~~~~~~~~~~~~ 545 (790)
.+.+.. .| +..+ ....+++.+. + +...|. .|.|.+-.+ ..-..+.++.+|.
T Consensus 143 ~e~~~~-lg---------------~Y~~--------~~~~t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~ 197 (404)
T KOG1409|consen 143 TESGNR-LG---------------GYNF--------ETPASALQFDAL-YAFVGDHSGQITMLKLEQNGCQLITTFNGHT 197 (404)
T ss_pred eccCCc-cc---------------ceEe--------eccCCCCceeeE-EEEecccccceEEEEEeecCCceEEEEcCcc
Confidence 222111 00 0000 1111122222 2 334444 455554443 3346778889999
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeec
Q 003871 546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 623 (790)
Q Consensus 546 ~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~-~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~ 623 (790)
+.+.+++|.|.. .+.+|..|..+.+||+..++- ...+.+|...|..+..-+--+.+.+++.||.|.+||++.......
T Consensus 198 ~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etp 277 (404)
T KOG1409|consen 198 GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETP 277 (404)
T ss_pred cceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCc
Confidence 999999999998 999999999999999975543 456788999999999888888999999999999999986332211
Q ss_pred eeeee------------------------eccCCCCCCCC-eEEEEEeCCCCEEEEEeCCcEEEE--------ECCCCce
Q 003871 624 KFLHS------------------------FQTGLVPETTI-VNHIQFHPDQIHLLSIHEGQIDVY--------EAPTLNH 670 (790)
Q Consensus 624 ~~l~~------------------------~~~~~~~~~~~-v~~i~~sp~~~~l~~~~dg~I~iw--------d~~~~~~ 670 (790)
.-+.+ +..+|-+..+. +...+-+....+...|..-.+++- |.. ..+
T Consensus 278 ewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~-~t~ 356 (404)
T KOG1409|consen 278 EWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEE-RTP 356 (404)
T ss_pred cccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCC-CCc
Confidence 10000 00000000011 111111111111111222234443 332 222
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 671 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 671 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
+..+. .-...|+.+.+...-.+|+|+|.|..|+|||+..
T Consensus 357 LA~ph--ei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 357 LAIPH--EIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred ccccc--ccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 33331 1245799999988888999999999999999874
No 260
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=4.9e-08 Score=97.64 Aligned_cols=246 Identities=15% Similarity=0.151 Sum_probs=164.2
Q ss_pred CCCCCeEEEEec--CcEEEEec----CCeEEEEECCC--CcEE--EEEcCCCCCeEEEEEcCCC-eEEEEe-CCCcEEEE
Q 003871 504 DPKDSISCFALR--GSHLFSAS----GGKISIFSLET--FQTL--ATFANPPPIATYFILLPQD-LFAFGF-DDSSILVH 571 (790)
Q Consensus 504 ~~~~~V~~l~~s--~~~l~s~s----dg~I~vwd~~~--~~~~--~~~~~~~~~v~~l~~s~~g-~l~sgs-~dg~I~iw 571 (790)
...+.++-++|+ ++.|.++. +|.|..|.++. |+.. ........+-+.++++++| +++++. ..|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 466778889999 55777765 36787777764 4432 2222233344889999999 777765 45789999
Q ss_pred eCCC-CceEE--EEcCCCCC----------EEEEEEeCCCCEEEEEeC-CCcEEEEECCCCceeeceeeeeeccCCCCCC
Q 003871 572 CPCT-KKTKA--KLKGHQNR----------ITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 637 (790)
Q Consensus 572 d~~~-~~~~~--~l~~h~~~----------v~~l~~spdg~~l~s~s~-dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~ 637 (790)
-++. |.+.. .+..|.+. +....++|+++++++.+. -..|.+|++..|+.....+.. ++.+
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-VKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-cCCC-----
Confidence 8865 43321 12225555 888999999999888764 347999999987765544444 4444
Q ss_pred CCeEEEEEeCCCCEEEE-E-eCCcEEEEECCCC-ceeeeecC------C-CCCCCeEEEEEecCCCEEEEEEc-CCeEEE
Q 003871 638 TIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL-NHTSQLVP------D-KMDLPITYATYSCDGKCIYVSCK-SGHVKV 706 (790)
Q Consensus 638 ~~v~~i~~sp~~~~l~~-~-~dg~I~iwd~~~~-~~~~~~~~------~-~h~~~v~~l~~s~dg~~l~sgs~-dg~i~v 706 (790)
...+.|+|+|++++..+ + -+++|.+|..... ..+..+.. . ........+..++||++|+++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 56789999999999887 4 7899999998763 22222211 1 11456778889999999998764 357888
Q ss_pred EECCC--CeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCC-cEEEEecCC
Q 003871 707 FDTST--LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG-RVHVIEPLE 764 (790)
Q Consensus 707 wd~~~--~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg-~i~iW~~~~ 764 (790)
|.+.. |++...-.. + .....+-.+.++| ++++|++++.|+ .|.++....
T Consensus 271 f~V~~~~g~L~~~~~~----~----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 271 FSVDPDGGKLELVGIT----P----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred EEEcCCCCEEEEEEEe----c----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcC
Confidence 87754 443222110 0 1123344889999 899998888664 788887654
No 261
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.21 E-value=2.1e-09 Score=103.55 Aligned_cols=271 Identities=14% Similarity=0.058 Sum_probs=162.7
Q ss_pred CCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcC---CCC-EEEEEeCCCcEEEEecCCCCccccccccccccc
Q 003871 412 SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH---SGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQ 487 (790)
Q Consensus 412 ~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~sp---dg~-~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~ 487 (790)
..|.+.+|++.+.+... ...+.. .....+..+.|.. +|. .++-+..+|.|.++.......
T Consensus 44 R~Gkl~Lys~~d~~~~~-l~~~q~---~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s------------ 107 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSP-LDTLQC---TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES------------ 107 (339)
T ss_pred eccceEEEeecccccCc-cceeee---ecccccceeeeeeccCCccceeeeccccceEEEEeecccee------------
Confidence 34678888887533222 111111 1245667777763 444 345556688888887553211
Q ss_pred cccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEE--EEcCCCCCeEEEEEcCCC--eEE
Q 003871 488 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA--TFANPPPIATYFILLPQD--LFA 560 (790)
Q Consensus 488 i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~g--~l~ 560 (790)
...+.......-......++.|+ +..++++. +|.+.+-+........ ..+.|.-+++...|+... .+.
T Consensus 108 -----s~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvy 182 (339)
T KOG0280|consen 108 -----SVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVY 182 (339)
T ss_pred -----eeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEE
Confidence 11111000000001123455666 55666666 7888866665554433 778899999999998777 999
Q ss_pred EEeCCCcEEEEeCCC-CceEEE-EcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCC
Q 003871 561 FGFDDSSILVHCPCT-KKTKAK-LKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 637 (790)
Q Consensus 561 sgs~dg~I~iwd~~~-~~~~~~-l~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~ 637 (790)
+|++|+.+..||++. ++.+.. .+-|...|.++.-+| .+.++++|+.|..|++||.++- .+++..-+.+
T Consensus 183 tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm----~kPl~~~~v~----- 253 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM----GKPLFKAKVG----- 253 (339)
T ss_pred ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc----cCccccCccc-----
Confidence 999999999999983 344433 345888999998887 6789999999999999999952 1333312222
Q ss_pred CCeEEEEEeCCC--CEEEEEeCCcEEEEECCCCcee---eeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEE-EEECC
Q 003871 638 TIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHT---SQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVK-VFDTS 710 (790)
Q Consensus 638 ~~v~~i~~sp~~--~~l~~~~dg~I~iwd~~~~~~~---~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~dg~i~-vwd~~ 710 (790)
+.|+.+..+|.- +.|+++.-+..+|-+...+... .......|..-+..-.|.....+++|++ .|+.++ +|-.-
T Consensus 254 GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 254 GGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred cceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeec
Confidence 789999999953 4455554444666666543321 1111112455566666654445677654 455544 66544
Q ss_pred CC
Q 003871 711 TL 712 (790)
Q Consensus 711 ~~ 712 (790)
++
T Consensus 334 t~ 335 (339)
T KOG0280|consen 334 TG 335 (339)
T ss_pred cC
Confidence 43
No 262
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.21 E-value=1.7e-09 Score=119.83 Aligned_cols=224 Identities=14% Similarity=0.091 Sum_probs=139.4
Q ss_pred CCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCC---CceEee
Q 003871 343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSL---EKSVNL 419 (790)
Q Consensus 343 d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d---~~i~iw 419 (790)
++.-.||++|...+.. +.+..+...+ .+.+|+ |||+.+ +.++.+ ..|.+|
T Consensus 167 ~~~~~l~~~d~~g~~~---------~~l~~~~~~~-------~~p~~S-------pdg~~l----a~~~~~~~~~~i~v~ 219 (417)
T TIGR02800 167 SRRYELQVADYDGANP---------QTITRSREPI-------LSPAWS-------PDGQKL----AYVSFESGKPEIYVQ 219 (417)
T ss_pred CCcceEEEEcCCCCCC---------EEeecCCCce-------ecccCC-------CCCCEE----EEEEcCCCCcEEEEE
Confidence 4444556999854433 4455566666 788999 999999 554432 579999
Q ss_pred eccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC-CCcEEEEecCCCCccccccccccccccccCCCceeee
Q 003871 420 KLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT 498 (790)
Q Consensus 420 d~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~-dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~ 498 (790)
|+.. +....+. .+...+.+++|+|||+.|+.... ++..
T Consensus 220 d~~~----g~~~~~~----~~~~~~~~~~~spDg~~l~~~~~~~~~~--------------------------------- 258 (417)
T TIGR02800 220 DLAT----GQREKVA----SFPGMNGAPAFSPDGSKLAVSLSKDGNP--------------------------------- 258 (417)
T ss_pred ECCC----CCEEEee----cCCCCccceEECCCCCEEEEEECCCCCc---------------------------------
Confidence 9963 4433332 24456677899999998775433 3321
Q ss_pred ecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeC-CC--cEEEEeCC
Q 003871 499 NDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPC 574 (790)
Q Consensus 499 ~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~-dg--~I~iwd~~ 574 (790)
.|.+||+.++.. ..+..+........|+|+| .|+..+. ++ .|+++|+.
T Consensus 259 ---------------------------~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~ 310 (417)
T TIGR02800 259 ---------------------------DIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD 310 (417)
T ss_pred ---------------------------cEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 122344433322 2222233333456899999 7665554 33 68888988
Q ss_pred CCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCE
Q 003871 575 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 651 (790)
Q Consensus 575 ~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg---~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~ 651 (790)
+++.. .+..+...+..+.|+|||++++.++.++ .|.+||+.++.. .. +... .......|+|+|+.
T Consensus 311 ~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~---~~---l~~~-----~~~~~p~~spdg~~ 378 (417)
T TIGR02800 311 GGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE---RV---LTDT-----GLDESPSFAPNGRM 378 (417)
T ss_pred CCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---EE---ccCC-----CCCCCceECCCCCE
Confidence 76643 4444556677889999999999888776 789999987432 11 2211 12345689999998
Q ss_pred EEEE-e-C--CcEEEEECCCCceeeeec
Q 003871 652 LLSI-H-E--GQIDVYEAPTLNHTSQLV 675 (790)
Q Consensus 652 l~~~-~-d--g~I~iwd~~~~~~~~~~~ 675 (790)
|+.. . + ..+++.+.. +.....+.
T Consensus 379 l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 379 ILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 8874 3 2 236666654 55555553
No 263
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.20 E-value=1.5e-08 Score=110.36 Aligned_cols=274 Identities=12% Similarity=0.041 Sum_probs=170.8
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEE
Q 003871 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 531 (790)
Q Consensus 453 g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd 531 (790)
+..+++++.++.+..+|..+++. +|....+.. ........+..++.++ +|.+..+|
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~------------~W~~~~~~~-----------~~~~p~v~~~~v~v~~~~g~l~ald 121 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKR------------LWRVDLDER-----------LSGGVGADGGLVFVGTEKGEVIALD 121 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcE------------eeeecCCCC-----------cccceEEcCCEEEEEcCCCEEEEEE
Confidence 56788888899999998877654 555332211 1112334466666666 89999999
Q ss_pred CCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEE-----EEEEeCCCCEEEEEeC
Q 003871 532 LETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-----CLAYSLSLNVLVSSGA 606 (790)
Q Consensus 532 ~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~-----~l~~spdg~~l~s~s~ 606 (790)
..+|+.+.+............. .++.++.++.+|.++.+|.++|+.+..+........ +.... +..++.+..
T Consensus 122 ~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~ 198 (377)
T TIGR03300 122 AEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFA 198 (377)
T ss_pred CCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECC
Confidence 9999998876533221111222 233777788899999999999988777654322111 11121 246778888
Q ss_pred CCcEEEEECCCCceeeceeeeeeccCCCCCCCC---e-EEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCC
Q 003871 607 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI---V-NHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLP 682 (790)
Q Consensus 607 dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~---v-~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~ 682 (790)
++.+..+|.++|+......+. .+.+... ... + ....+. ++..++++.+|.++.||..+|+.+-..... .
T Consensus 199 ~g~v~ald~~tG~~~W~~~~~-~~~g~~~-~~~~~~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~----~ 271 (377)
T TIGR03300 199 GGKLVALDLQTGQPLWEQRVA-LPKGRTE-LERLVDVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKRDAS----S 271 (377)
T ss_pred CCEEEEEEccCCCEeeeeccc-cCCCCCc-hhhhhccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEEEeeccC----C
Confidence 999999999998755433222 1111000 000 0 111122 343334468999999999999876554321 1
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEec
Q 003871 683 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 683 v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
..... .++..++.++.||.++.+|..+|+.+...... + ..... +... .+..+++++.||.|++++.
T Consensus 272 ~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-----~--~~~~s--sp~i---~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 272 YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL-----K--YRQLT--APAV---VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc-----c--CCccc--cCEE---ECCEEEEEeCCCEEEEEEC
Confidence 11222 34677888889999999999999877554211 1 11111 1111 3568888999999999999
Q ss_pred CCCccccccCC
Q 003871 763 LESEVEWGKLP 773 (790)
Q Consensus 763 ~~~~~~w~~~~ 773 (790)
.+|+..|....
T Consensus 338 ~tG~~~~~~~~ 348 (377)
T TIGR03300 338 EDGSFVARLKT 348 (377)
T ss_pred CCCCEEEEEEc
Confidence 99999987643
No 264
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.19 E-value=2.7e-08 Score=101.75 Aligned_cols=224 Identities=14% Similarity=0.143 Sum_probs=150.9
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEecCCeE
Q 003871 449 YSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKI 527 (790)
Q Consensus 449 ~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~sdg~I 527 (790)
.+.||+.++.. ..|.|.+||..+... .+....+ | +. ......+.. ....-....+.. |++++..+.|+.
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~l--ekldI~l-p-l~--rk~k~~k~~---~pskyledfa~~~Gd~ia~VSRGka 343 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSL--EKLDIGL-P-LD--RKKKQPKFV---NPSKYLEDFAVVNGDYIALVSRGKA 343 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCcc--eeeecCC-c-cc--ccccccccc---CHHHhhhhhccCCCcEEEEEecCcE
Confidence 46789877654 457899998876544 0000000 0 00 000000000 001111123333 899999999998
Q ss_pred EEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC-cEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEe
Q 003871 528 SIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 605 (790)
Q Consensus 528 ~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg-~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s 605 (790)
.+.+...+-.++. ++...|.-..+..++ .++.|..|| .+-|+|..+++. +.+...-+.|.++..+|||++++.+.
T Consensus 344 Fi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaN 420 (668)
T COG4946 344 FIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVAN 420 (668)
T ss_pred EEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEc
Confidence 8888765544432 567779888888888 899999999 899999987754 45666678899999999999999999
Q ss_pred CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eC----CcEEEEECCCCceeeeecCCCCC
Q 003871 606 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE----GQIDVYEAPTLNHTSQLVPDKMD 680 (790)
Q Consensus 606 ~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d----g~I~iwd~~~~~~~~~~~~~~h~ 680 (790)
+...+.+.|+.+|.. +.+. .... +-|+.+.|||+++++|-+ -+ ..|+++|+.+++....... .
T Consensus 421 dr~el~vididngnv---~~id---kS~~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~---t 488 (668)
T COG4946 421 DRFELWVIDIDNGNV---RLID---KSEY---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP---T 488 (668)
T ss_pred CceEEEEEEecCCCe---eEec---cccc---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC---c
Confidence 999999999999763 2222 2222 689999999999999985 33 4599999998877655433 2
Q ss_pred CCeEEEEEecCCCEEEE
Q 003871 681 LPITYATYSCDGKCIYV 697 (790)
Q Consensus 681 ~~v~~l~~s~dg~~l~s 697 (790)
..=.+-+|.|||++|+-
T Consensus 489 a~DfsPaFD~d~ryLYf 505 (668)
T COG4946 489 AYDFSPAFDPDGRYLYF 505 (668)
T ss_pred ccccCcccCCCCcEEEE
Confidence 23345567777776653
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.18 E-value=7.5e-10 Score=108.58 Aligned_cols=257 Identities=15% Similarity=0.205 Sum_probs=170.3
Q ss_pred CCCCeEEEEec--CcEEEEec-CCeEEEEECCCCc-----EEEEEcCCC------------CCeEEEEEcCCC---eEEE
Q 003871 505 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-----TLATFANPP------------PIATYFILLPQD---LFAF 561 (790)
Q Consensus 505 ~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~-----~~~~~~~~~------------~~v~~l~~s~~g---~l~s 561 (790)
...-|.++.|. |++|++|. +|.|.++.-+... ....++.|. ..|..+.|.+++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45678899999 99999999 8999999764322 233344443 357788998887 7778
Q ss_pred EeCCCcEEEEeCCCCce-----------------------------------EEEE-cCCCCCEEEEEEeCCCCEEEEEe
Q 003871 562 GFDDSSILVHCPCTKKT-----------------------------------KAKL-KGHQNRITCLAYSLSLNVLVSSG 605 (790)
Q Consensus 562 gs~dg~I~iwd~~~~~~-----------------------------------~~~l-~~h~~~v~~l~~spdg~~l~s~s 605 (790)
.+.|.+|++|-+..... .+.+ .+|+--|+++.++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 88999999998753210 0111 24777899999999999888764
Q ss_pred CCCcEEEEECCCCceeeceeeeeeccCC-CCCCCCeEEEEEeCCCC-EEE-EEeCCcEEEEECCCCcee----eeecCC-
Q 003871 606 ADAQLCVWDAVGWKKLCSKFLHSFQTGL-VPETTIVNHIQFHPDQI-HLL-SIHEGQIDVYEAPTLNHT----SQLVPD- 677 (790)
Q Consensus 606 ~dg~I~vwd~~~~~~~~~~~l~~~~~~~-~~~~~~v~~i~~sp~~~-~l~-~~~dg~I~iwd~~~~~~~----~~~~~~- 677 (790)
|-.|-+|+++--.. ...+-.+.... .....-|++..|+|..- .++ +++.|+|++-|++...+. +.+...
T Consensus 184 -dLRINLWnlei~d~--sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQ--SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred -ceeeeeccccccCC--ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 77899999874211 11221121111 00113578889999653 333 358999999999843211 111100
Q ss_pred ---C------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEeccccccCCC----Ccccccc-eEEEEEec
Q 003871 678 ---K------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTS-TLELRCQINLTAYAQPG----TISLELY-PLVIAAHP 742 (790)
Q Consensus 678 ---~------h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~-~~~~~~~~~~~~~~~~g----h~~~~v~-~~~v~~sp 742 (790)
. --..|..+.|+++|+|+++-+. -+|++||+. ..+++..+..|.++..- ...+.|+ -.-++|+.
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 0 0246889999999999998532 789999994 45666666655433210 0112222 34789999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCc
Q 003871 743 LEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 743 ~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
++.+++|||....+++++...|.
T Consensus 340 -~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 340 -NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred -CcceEecccccceEEEecCCCCc
Confidence 78999999999999999976664
No 266
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=3e-09 Score=113.31 Aligned_cols=300 Identities=12% Similarity=0.138 Sum_probs=190.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc---cccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ---SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~---~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.....+++|+.+..|++.||.||.++|..+.+... ..| .+..+ + +.-....+||...|.-+.|+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g--laa~s-------n--LsmNQtLeGH~~sV~vvTWNe~ 82 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG--LAAAS-------N--LSMNQTLEGHNASVMVVTWNEN 82 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc--ccccc-------c--cchhhhhccCcceEEEEEeccc
Confidence 45678999999999999999999999999876544 111 11110 0 11111235899999999999
Q ss_pred CcEEEEec-CCeEEEEECCCCcEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE-EEEcCCCCCEE
Q 003871 516 GSHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRIT 590 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~--~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~-~~l~~h~~~v~ 590 (790)
.+.|-+.. +|.|.+|-+-.|.....+. ....-|.+++|..+| .+.....||.|.+=.++..+.. +.+++ ....
T Consensus 83 ~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~ 160 (1189)
T KOG2041|consen 83 NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLA 160 (1189)
T ss_pred cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--hecc
Confidence 44555555 7999999998776544332 234568999999999 9999999999887776643321 22333 2244
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceee---ceeeeeeccCCCCCCCCeEEEEE--------eCCCCEEEEE-eCC
Q 003871 591 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC---SKFLHSFQTGLVPETTIVNHIQF--------HPDQIHLLSI-HEG 658 (790)
Q Consensus 591 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~---~~~l~~~~~~~~~~~~~v~~i~~--------sp~~~~l~~~-~dg 658 (790)
.+.|++|.+.++.+-.+|.+.+||.+..-..+ ...+. ...+.++-...|..+.| -||...|+++ ..|
T Consensus 161 hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn-~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG 239 (1189)
T KOG2041|consen 161 HVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVN-GTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG 239 (1189)
T ss_pred ceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEe-eeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCc
Confidence 78999999998888899999999987631110 00011 11111100023444554 3477788887 677
Q ss_pred cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC---------eEEEEECCCCeEEEEeccccccCCCCc
Q 003871 659 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG---------HVKVFDTSTLELRCQINLTAYAQPGTI 729 (790)
Q Consensus 659 ~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg---------~i~vwd~~~~~~~~~~~~~~~~~~gh~ 729 (790)
.+.|..-.+......+.. ...+..+.|+++|..|+.+|.+. .|.+|.. -|+.+..+...
T Consensus 240 r~QiMR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvp-------- 307 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVP-------- 307 (1189)
T ss_pred eehhhhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecC--------
Confidence 777766544333333322 56789999999999999888652 3444432 24444444422
Q ss_pred ccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCcccccc
Q 003871 730 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 771 (790)
Q Consensus 730 ~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~ 771 (790)
+..|+ +++|-. .|-.+|.+ .|+.|++=++. ++.+|+.
T Consensus 308 g~~It--~lsWEg-~gLriA~A-vdsfiyfanIR-P~ykWgy 344 (1189)
T KOG2041|consen 308 GSCIT--GLSWEG-TGLRIAIA-VDSFIYFANIR-PEYKWGY 344 (1189)
T ss_pred Cceee--eeEEcC-CceEEEEE-ecceEEEEeec-ccceEEE
Confidence 22444 888877 56666655 46666655543 2344544
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.17 E-value=3.9e-08 Score=107.15 Aligned_cols=294 Identities=10% Similarity=0.042 Sum_probs=177.8
Q ss_pred CCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCce-EEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 003871 400 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 478 (790)
Q Consensus 400 g~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V-~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g 478 (790)
+..+ ++++.++.+.-+|..+ ....-+..+.. .+ .... .++..+++++.++.+..+|..++..
T Consensus 65 ~~~v----~v~~~~g~v~a~d~~t---G~~~W~~~~~~-----~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~--- 127 (377)
T TIGR03300 65 GGKV----YAADADGTVVALDAET---GKRLWRVDLDE-----RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKE--- 127 (377)
T ss_pred CCEE----EEECCCCeEEEEEccC---CcEeeeecCCC-----CcccceE--EcCCEEEEEcCCCEEEEEECCCCcE---
Confidence 5566 7888889999999863 22222333221 11 1122 2466788888899999999877654
Q ss_pred ccccccccccccCCCceeeeecccCCCCCCeEE-EEecCcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCe-----EEE
Q 003871 479 EENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-----TYF 551 (790)
Q Consensus 479 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~-l~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v-----~~l 551 (790)
+|....+ ..+.+ ....+..++.+. +|.+..||.++|+.+.++....... .+.
T Consensus 128 ---------~W~~~~~------------~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp 186 (377)
T TIGR03300 128 ---------LWRAKLS------------SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASP 186 (377)
T ss_pred ---------eeeeccC------------ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCC
Confidence 4543211 11111 122344555555 8999999999999888776433221 111
Q ss_pred EEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCC--C-----CEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCceee
Q 003871 552 ILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ--N-----RITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLC 622 (790)
Q Consensus 552 ~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~--~-----~v~~l~~sp--dg~~l~s~s~dg~I~vwd~~~~~~~~ 622 (790)
... ++.++.+..+|.+..+|..+|+.+....... + ....+.-+| .+..++.++.++.+..||..+|+...
T Consensus 187 ~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W 265 (377)
T TIGR03300 187 VIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLW 265 (377)
T ss_pred EEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEE
Confidence 111 2367788889999999999998765432110 0 000111112 34578888889999999999986543
Q ss_pred ceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC
Q 003871 623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 701 (790)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d 701 (790)
..... ....... ++..+++ +.+|.++.+|..+++.+-...... ......... .+..+++++.+
T Consensus 266 ~~~~~-----------~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~-~~~~ssp~i--~g~~l~~~~~~ 329 (377)
T TIGR03300 266 KRDAS-----------SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELK-YRQLTAPAV--VGGYLVVGDFE 329 (377)
T ss_pred eeccC-----------CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEcccccc-CCccccCEE--ECCEEEEEeCC
Confidence 32211 1112222 3445555 578999999999998765442111 112222222 46789999999
Q ss_pred CeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEE
Q 003871 702 GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 760 (790)
Q Consensus 702 g~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW 760 (790)
|.|+++|..+|+.+..+... ...+.. +.++. + +.|+.++.||.|+.|
T Consensus 330 G~l~~~d~~tG~~~~~~~~~--------~~~~~~-sp~~~--~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 330 GYLHWLSREDGSFVARLKTD--------GSGIAS-PPVVV--G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEECCCCCEEEEEEcC--------CCcccc-CCEEE--C-CEEEEEeCCceEEEe
Confidence 99999999999998877632 111210 12222 3 457888899999876
No 268
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.16 E-value=4.8e-09 Score=101.10 Aligned_cols=247 Identities=13% Similarity=0.063 Sum_probs=159.2
Q ss_pred CCCCeEEEEec-----Cc-EEEEec-CCeEEEEECCCCcEEEEEcCCCC------CeEEEEEcCCC-eEEEEeCCCcEEE
Q 003871 505 PKDSISCFALR-----GS-HLFSAS-GGKISIFSLETFQTLATFANPPP------IATYFILLPQD-LFAFGFDDSSILV 570 (790)
Q Consensus 505 ~~~~V~~l~~s-----~~-~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~------~v~~l~~s~~g-~l~sgs~dg~I~i 570 (790)
..+.+..+.|. |. .++-+. .|.|.++..........+.+-.. ...++.|++.+ .++++..+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 45566677776 44 233334 78999988764443333332211 23578899999 9999999999986
Q ss_pred EeCCCCce--EEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeC
Q 003871 571 HCPCTKKT--KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 647 (790)
Q Consensus 571 wd~~~~~~--~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp 647 (790)
-+...... ++.+++|........|+. +.+.+.+|++|+.+..||++..+ ..+..-..-|. ..|.+|.-+|
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~----~~i~~n~kvH~---~GV~SI~ss~ 220 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK----TFIWHNSKVHT---SGVVSIYSSP 220 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc----ceeeecceeee---cceEEEecCC
Confidence 66555543 347889999999999986 56789999999999999999422 12221122344 5899988876
Q ss_pred -CCCEEEEE-eCCcEEEEECC-CCceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEeccccc
Q 003871 648 -DQIHLLSI-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAY 723 (790)
Q Consensus 648 -~~~~l~~~-~dg~I~iwd~~-~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~ 723 (790)
.+.++++| .|..|++||.+ .++++..-. -.+.|+++.++|.- ..++.+..-+-.+|-+...+.... ....+
T Consensus 221 ~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~--~~~~~ 295 (339)
T KOG0280|consen 221 PKPTYIATGSYDECIRVLDTRNMGKPLFKAK---VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEF--QIVLP 295 (339)
T ss_pred CCCceEEEeccccceeeeehhcccCccccCc---cccceEEEEecchhhhHHHHHHHhcCceEEEecccccch--heeee
Confidence 46788886 89999999998 466655433 36889999999843 233333444446777766553321 11111
Q ss_pred cCCCCcccccceEEEEEecCCCCEEEEEe-CCCcEE-EEecCCCcc
Q 003871 724 AQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVH-VIEPLESEV 767 (790)
Q Consensus 724 ~~~gh~~~~v~~~~v~~sp~d~~~las~s-~Dg~i~-iW~~~~~~~ 767 (790)
.-.+| ..-.+ .-.|.. ....||||+ .|..++ +|-..++++
T Consensus 296 s~~~h-dSl~Y--G~DWd~-~~~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 296 SDKIH-DSLCY--GGDWDS-KDSFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred ccccc-cceee--cccccc-ccceeeeeeccccceeeeeeeccCCc
Confidence 11244 22333 555544 345688875 677755 887776653
No 269
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=5e-09 Score=112.92 Aligned_cols=412 Identities=10% Similarity=-0.020 Sum_probs=249.3
Q ss_pred ccccCccccchhhhhhhhccCCCccccccccCCC-------------------CCCCcceeeeccCCCcccccccccCCC
Q 003871 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------------------ANNETISLKDFPTVSNLRYASSILTDK 367 (790)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd-------------------~~d~~i~l~iwd~~~g~~~~~~~~~~~ 367 (790)
..|.+-|..+.+.+++++.|...|+ .+.|+|. ...|.|. +||...+..+
T Consensus 35 slV~VVDs~s~q~iqsie~h~s~V~--~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi--l~d~~~~s~~-------- 102 (1062)
T KOG1912|consen 35 SLVSVVDSRSLQLIQSIELHQSAVT--SVRWAPAPSPRDLLSPSSSQLLIASADISGRII--LVDFVLASVI-------- 102 (1062)
T ss_pred ceEEEEehhhhhhhhccccCcccee--EEEeccCCCchhccCccccceeEEeccccCcEE--EEEehhhhhh--------
Confidence 3445556667788999999998877 9999987 2356777 9999988876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
..+..|.+++ ..++|.... +|.+.+ ++.-....++.+|+.+. .+..-+.. .......|+
T Consensus 103 ~~l~~~~~~~-------qdl~W~~~r----d~Srd~---LlaIh~ss~lvLwntdt---G~k~Wk~~----ys~~iLs~f 161 (1062)
T KOG1912|consen 103 NWLSHSNDSV-------QDLCWVPAR----DDSRDV---LLAIHGSSTLVLWNTDT---GEKFWKYD----YSHEILSCF 161 (1062)
T ss_pred hhhcCCCcch-------hheeeeecc----Ccchhe---eEEecCCcEEEEEEccC---Cceeeccc----cCCcceeee
Confidence 7778888888 899997222 455333 25556668999999874 23333322 123445568
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEecCCCCccc--ccccccccc------ccccCCCceeeeecccCCCCCCeE--EEEec-
Q 003871 448 IYSH-SGDFLVALTQTATHKLWKWQSNKQSL--EEENVNMES------QLYQPSSKLVMTNDIAADPKDSIS--CFALR- 515 (790)
Q Consensus 448 ~~sp-dg~~l~s~~~dg~i~vw~~~~~~~~~--g~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~V~--~l~~s- 515 (790)
.+.| |.+.+...+..|.+.+-+.-....+. |+...--++ .--...+|...+... ....-..+ .++|+
T Consensus 162 ~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~-~sa~fity~a~faf~p 240 (1062)
T KOG1912|consen 162 RVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP-ASAYFITYCAQFAFSP 240 (1062)
T ss_pred eeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC-cchhHHHHHHhhhcCh
Confidence 8888 66677777777877776654333311 111000000 000000110000000 00000011 23444
Q ss_pred --CcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCC--------------
Q 003871 516 --GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTK-------------- 576 (790)
Q Consensus 516 --~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g---~l~sgs~dg~I~iwd~~~~-------------- 576 (790)
.+.++..-...+.++|++-..++....-..+.+.-+.|-|++ .++.+..||.+.+|-.+..
T Consensus 241 ~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~d 320 (1062)
T KOG1912|consen 241 HWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMD 320 (1062)
T ss_pred hhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccc
Confidence 556666667889999999888888887777777888999988 8899999999999976531
Q ss_pred --ceEEEEcC-CCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceeecee-----------------------eeee
Q 003871 577 --KTKAKLKG-HQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKF-----------------------LHSF 629 (790)
Q Consensus 577 --~~~~~l~~-h~~~v~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~-----------------------l~~~ 629 (790)
.....+.. .+..+...+..|. .+.++.--.+|.+.+|.+.+|+...... +..+
T Consensus 321 l~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~L 400 (1062)
T KOG1912|consen 321 LGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISL 400 (1062)
T ss_pred cccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccch
Confidence 11111111 1112222233343 3344444457777888887644211000 0000
Q ss_pred --ccCCCCCCCCeEEEEEeC-----------CC-------CEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEE
Q 003871 630 --QTGLVPETTIVNHIQFHP-----------DQ-------IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY 688 (790)
Q Consensus 630 --~~~~~~~~~~v~~i~~sp-----------~~-------~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~ 688 (790)
..+|. ...++....| .+ ..+|+| ..|+|.++|+.++...+.+.. |...|.++.|
T Consensus 401 S~dg~h~---sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsv--ht~~VkgleW 475 (1062)
T KOG1912|consen 401 SDDGSHS---SGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSV--HTSLVKGLEW 475 (1062)
T ss_pred hhcCCCC---CCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcc--cccceeeeee
Confidence 11222 3444444333 22 235556 789999999999988887765 7899999999
Q ss_pred ecCCCEEEE---------EEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEE
Q 003871 689 SCDGKCIYV---------SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 759 (790)
Q Consensus 689 s~dg~~l~s---------gs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~i 759 (790)
--..+++-. |+.-+.+.+-|+++|.-+. |... .+....+|. .+..+. .|.||+..-.|.-+-+
T Consensus 476 ~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~-fR~l----~~~despI~--~irvS~-~~~yLai~Fr~~plEi 547 (1062)
T KOG1912|consen 476 LGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR-FRGL----QKPDESPIR--AIRVSS-SGRYLAILFRREPLEI 547 (1062)
T ss_pred ccceeEEEeeeccccccccceeeeEEEEEcccccccc-cccC----CCCCcCcce--eeeecc-cCceEEEEecccchHH
Confidence 876665532 2233568888999985432 2210 133455677 667777 7899999999999999
Q ss_pred EecCCC
Q 003871 760 IEPLES 765 (790)
Q Consensus 760 W~~~~~ 765 (790)
||+.+.
T Consensus 548 wd~kt~ 553 (1062)
T KOG1912|consen 548 WDLKTL 553 (1062)
T ss_pred Hhhccc
Confidence 999654
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.14 E-value=5.6e-08 Score=101.35 Aligned_cols=265 Identities=12% Similarity=0.052 Sum_probs=157.4
Q ss_pred CcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceecc---------CCC
Q 003871 344 ETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK---------SLE 414 (790)
Q Consensus 344 ~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s---------~d~ 414 (790)
++|. +.|..+++.+ .++..-..+ ..+ +| |||+.+ +++.+ .+.
T Consensus 27 ~~v~--ViD~~~~~v~--------g~i~~G~~P--------~~~-~s-------pDg~~l---yva~~~~~R~~~G~~~d 77 (352)
T TIGR02658 27 TQVY--TIDGEAGRVL--------GMTDGGFLP--------NPV-VA-------SDGSFF---AHASTVYSRIARGKRTD 77 (352)
T ss_pred ceEE--EEECCCCEEE--------EEEEccCCC--------cee-EC-------CCCCEE---EEEeccccccccCCCCC
Confidence 7788 8999888775 444433333 233 77 999998 34445 589
Q ss_pred ceEeeeccccCCCCceeeeeccCCCC---CCceEEEEEcCCCCEEEEEeC--CCcEEEEecCCCCccccccccccccccc
Q 003871 415 KSVNLKLQLINEPSECRTLLLPDNSF---GGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLY 489 (790)
Q Consensus 415 ~i~iwd~~~~~~~~~~~~~~l~~~~h---~~~V~~l~~spdg~~l~s~~~--dg~i~vw~~~~~~~~~g~~~~~~~~~i~ 489 (790)
.|.+||..+ ......+.++...+ ......+++||||++|++... ++.+.+.|+.+.+.
T Consensus 78 ~V~v~D~~t---~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-------------- 140 (352)
T TIGR02658 78 YVEVIDPQT---HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-------------- 140 (352)
T ss_pred EEEEEECcc---CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE--------------
Confidence 999999985 33444444432111 233457899999999987773 78999999887554
Q ss_pred cCCCceeeeecccCCCCCCeEEEEec-CcEEEEecCCeEEEEECCC-CcEE----EEEcCCCCCe-EEEEEcC-CC-eEE
Q 003871 490 QPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTL----ATFANPPPIA-TYFILLP-QD-LFA 560 (790)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~sdg~I~vwd~~~-~~~~----~~~~~~~~~v-~~l~~s~-~g-~l~ 560 (790)
+...- -.....-+..+ ....+.+.||......+.+ |+.. ..+.....++ ..-.+.+ +| .+.
T Consensus 141 -------v~ei~---vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~ 210 (352)
T TIGR02658 141 -------VRMMD---VPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW 210 (352)
T ss_pred -------EEEEe---CCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE
Confidence 11000 01111111122 2223333344333322221 2111 1111111111 0013455 67 555
Q ss_pred EEeCCCcEEEEeCCCC-----ceEEEEcC-------CCCCEEEEEEeCCCCEEEEEeC----------CCcEEEEECCCC
Q 003871 561 FGFDDSSILVHCPCTK-----KTKAKLKG-------HQNRITCLAYSLSLNVLVSSGA----------DAQLCVWDAVGW 618 (790)
Q Consensus 561 sgs~dg~I~iwd~~~~-----~~~~~l~~-------h~~~v~~l~~spdg~~l~s~s~----------dg~I~vwd~~~~ 618 (790)
+... |+|++.|+... +....+.. ..+.+.-++++|+++++..... .+.|.++|..++
T Consensus 211 vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~ 289 (352)
T TIGR02658 211 PTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG 289 (352)
T ss_pred EecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC
Confidence 5554 99999996433 22322211 2344556999999998887431 247999999996
Q ss_pred ceeeceeeeeeccCCCCCCCCeEEEEEeCCCC-EEEEE--eCCcEEEEECCCCceeeeec
Q 003871 619 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI--HEGQIDVYEAPTLNHTSQLV 675 (790)
Q Consensus 619 ~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~--~dg~I~iwd~~~~~~~~~~~ 675 (790)
+.. ..+..+ ..+..++++||++ +|++. .++.|.++|..+++.++++.
T Consensus 290 kvi-----~~i~vG-----~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 290 KRL-----RKIELG-----HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred eEE-----EEEeCC-----CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 543 334444 4689999999999 77763 67889999999999998873
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.2e-08 Score=107.72 Aligned_cols=189 Identities=12% Similarity=0.099 Sum_probs=139.8
Q ss_pred CCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEE------cC--------------CCCEEE
Q 003871 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY------SH--------------SGDFLV 457 (790)
Q Consensus 398 ~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~------sp--------------dg~~l~ 457 (790)
|-+.++ |....||.++||+.. .++.++-..|...-++.-++.+| +| |-..++
T Consensus 3 ~~~~~~----A~~~~~g~l~iw~t~----~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lv 74 (541)
T KOG4547|consen 3 PALDYF----ALSTGDGRLRIWDTA----KNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLV 74 (541)
T ss_pred chhheE----eecCCCCeEEEEEcc----CceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEE
Confidence 446677 999999999999997 34444322222111223333333 22 223455
Q ss_pred EEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCC
Q 003871 458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET 534 (790)
Q Consensus 458 s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~ 534 (790)
-|...|.|.+|+.. .|.+........|.+.|.++.++ -..|.+++ |+.+..|+...
T Consensus 75 lgt~~g~v~~ys~~---------------------~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~ 133 (541)
T KOG4547|consen 75 LGTPQGSVLLYSVA---------------------GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE 133 (541)
T ss_pred eecCCccEEEEEec---------------------CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence 55556777666554 44455555556899999999999 66788888 99999999999
Q ss_pred CcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCC-----CCEEEE-EeCC
Q 003871 535 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS-----LNVLVS-SGAD 607 (790)
Q Consensus 535 ~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd-----g~~l~s-~s~d 607 (790)
.+.++.+......+.+++++||| .+++|+ +.|.+||+++++.+..|.||.++|+++.|.-+ |.++.+ ...+
T Consensus 134 ~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 134 KVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred ceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccc
Confidence 99999999888999999999999 888887 68999999999999999999999999999876 666554 4445
Q ss_pred CcEEEEECCC
Q 003871 608 AQLCVWDAVG 617 (790)
Q Consensus 608 g~I~vwd~~~ 617 (790)
.-+.+|-++.
T Consensus 212 r~i~~w~v~~ 221 (541)
T KOG4547|consen 212 RGITVWVVEK 221 (541)
T ss_pred cceeEEEEEc
Confidence 6677776654
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.10 E-value=2.2e-08 Score=105.68 Aligned_cols=197 Identities=14% Similarity=0.074 Sum_probs=144.0
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCCc-----cccccccccccccccCCCceeeeecccCCCCCCeEEEEec-----C-cE
Q 003871 450 SHSGDFLVALTQTATHKLWKWQSNKQ-----SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----G-SH 518 (790)
Q Consensus 450 spdg~~l~s~~~dg~i~vw~~~~~~~-----~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-----~-~~ 518 (790)
.|-+.|+|....||.+++|+...+.. +..+...+.....|...-+ .......+..+. + ..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~---------~s~~k~~~~~~~~~~s~~t~~ 72 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSAD---------YSPMKWLSLEKAKKASLDTSM 72 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEec---------cchHHHHhHHHHhhccCCceE
Confidence 34567889999999999999887665 1111111111122321000 011111111111 2 24
Q ss_pred EEEec-CCeEEEEECCCCcEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEE
Q 003871 519 LFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 594 (790)
Q Consensus 519 l~s~s-dg~I~vwd~~~~~~~~~~~--~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~ 594 (790)
++-|. .|.|.+|++..|+...++. .|.+.|.++.++.+- .|.+++.|+.+..|+...+..+..+...+..+.++++
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCI 152 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEE
Confidence 55566 7999999999999888886 688899999988877 9999999999999999999999999988889999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC-----CCEEEEE--eCCcEEEEECC
Q 003871 595 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-----QIHLLSI--HEGQIDVYEAP 666 (790)
Q Consensus 595 spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~-----~~~l~~~--~dg~I~iwd~~ 666 (790)
+|||..+++++ ++|++||+++++ .+. ...||. ++|++++|.-+ |.++.++ .+..+.+|-+.
T Consensus 153 s~D~~~l~~as--~~ik~~~~~~ke-----vv~-~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 153 SPDGKILLTAS--RQIKVLDIETKE-----VVI-TFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cCCCCEEEecc--ceEEEEEccCce-----EEE-EecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 99999999887 689999999943 344 556777 79999999887 7888874 55567777654
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.09 E-value=3.8e-07 Score=108.07 Aligned_cols=354 Identities=13% Similarity=0.158 Sum_probs=202.0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
-++.|- +|...+ +.+..+|.|.+...+.......+...- .-...|.+++||||+..|+.++.+++
T Consensus 79 vs~~yl-------~d~~~l----~~~~~~Gdi~~~~~~~~~~~~~~E~VG----~vd~GI~a~~WSPD~Ella~vT~~~~ 143 (928)
T PF04762_consen 79 VSFQYL-------ADSESL----CIALASGDIILVREDPDPDEDEIEIVG----SVDSGILAASWSPDEELLALVTGEGN 143 (928)
T ss_pred EEEEec-------cCCCcE----EEEECCceEEEEEccCCCCCceeEEEE----EEcCcEEEEEECCCcCEEEEEeCCCE
Confidence 677887 888888 888899999999332111122222211 12578999999999999999999998
Q ss_pred EEEEecCCCCc----cc----cc-ccccc--cc--ccccCCCcee-----eeeccc---C---CCCCCeEEEEec--CcE
Q 003871 465 HKLWKWQSNKQ----SL----EE-ENVNM--ES--QLYQPSSKLV-----MTNDIA---A---DPKDSISCFALR--GSH 518 (790)
Q Consensus 465 i~vw~~~~~~~----~~----g~-~~~~~--~~--~i~~~~~~~~-----~~~~~~---~---~~~~~V~~l~~s--~~~ 518 (790)
+.+.+-.=... .. |. ...++ .. .-++-..|+. ...... . .....-..++|- |.+
T Consensus 144 l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 144 LLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY 223 (928)
T ss_pred EEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE
Confidence 88764321110 00 00 00000 00 0001111110 000000 0 133455678888 888
Q ss_pred EEEec----C---CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeC---CCcEEEEeCCCCceEEEEc----
Q 003871 519 LFSAS----G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAKLK---- 583 (790)
Q Consensus 519 l~s~s----d---g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~---dg~I~iwd~~~~~~~~~l~---- 583 (790)
+|+.+ . ..++||+-+ |....+-+.-.+--.+++|.|.| +||+.-. ...|.+|.. +|-....|.
T Consensus 224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~ 301 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFD 301 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCC
Confidence 88765 2 379999987 66555544334444688999999 8887754 346777874 454433332
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCC-CEEEE-EeCCcEE
Q 003871 584 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQID 661 (790)
Q Consensus 584 ~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~-~~l~~-~~dg~I~ 661 (790)
.....|..+.|++|+..||....|. |.+|-..+..-.-...+. +... ..+..+.|+|.. ..|.+ ..+|.+.
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~-~~~~-----~~~~~~~Wdpe~p~~L~v~t~~g~~~ 374 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR-FSSS-----ESVNFVKWDPEKPLRLHVLTSNGQYE 374 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE-ccCC-----CCCCceEECCCCCCEEEEEecCCcEE
Confidence 3456799999999999999987665 999999885432223333 2221 245558888854 33444 3445554
Q ss_pred EEECC----CCc--------eeeee---------------cCC------CCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 662 VYEAP----TLN--------HTSQL---------------VPD------KMDLPITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 662 iwd~~----~~~--------~~~~~---------------~~~------~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
.++.. .+. .+..+ .++ .-..+|.+++|++++..+++-..||.|.+|.
T Consensus 375 ~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 375 IYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred EEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 44321 110 01111 000 1256899999999998899999999999998
Q ss_pred CCCCeEE--------EEecccc--ccCCCCcccccceEEEEEecCCCCEEEEEeCC---CcEEEEecCCC
Q 003871 709 TSTLELR--------CQINLTA--YAQPGTISLELYPLVIAAHPLEPNRIALGLTN---GRVHVIEPLES 765 (790)
Q Consensus 709 ~~~~~~~--------~~~~~~~--~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D---g~i~iW~~~~~ 765 (790)
....... ..+.... .......... ...++|.. +...++....+ +.+.+++....
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (928)
T PF04762_consen 455 WDLKNMWSVKPPKLLSSISLDSMDISDSELPLGS--LRQLAWLN-DDTLLVLSDSDSNQSKIVLVDIDDS 521 (928)
T ss_pred ecCCCcccccCcchhhhccccccccccccccccc--EEEEEEeC-CCEEEEEEecCcccceEEEEEeccC
Confidence 6543221 1111000 0000000122 34788887 55555555544 57788877433
No 274
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=6.2e-08 Score=105.52 Aligned_cols=210 Identities=10% Similarity=0.021 Sum_probs=132.6
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-e-EEEEeCC---CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCC
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 599 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~-l~sgs~d---g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~ 599 (790)
..|.+-|.+. ...+.+.... ......|+||| . ++..+.+ ..|+++|+.+++...... ..+......|+|||+
T Consensus 169 ~~l~~~d~dg-~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTL-TYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCC-CceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 3566666653 3344444333 67789999999 4 6654443 479999998886544333 455566788999998
Q ss_pred EEEEEe-C--CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeC--C--cEEEEECCCCceee
Q 003871 600 VLVSSG-A--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE--G--QIDVYEAPTLNHTS 672 (790)
Q Consensus 600 ~l~s~s-~--dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~d--g--~I~iwd~~~~~~~~ 672 (790)
.++... . +..|.++|+.+++. ..+. ... .......|+|||+.|+...+ + .|+++|+.+++..+
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~---~~LT---~~~----~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r 315 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL---TQIT---NYP----GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ 315 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE---EEcc---cCC----CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe
Confidence 876543 2 35688889887542 1222 111 12334579999998887432 2 69999998777644
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcC---------CeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecC
Q 003871 673 QLVPDKMDLPITYATYSCDGKCIYVSCKS---------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 743 (790)
Q Consensus 673 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~d---------g~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~ 743 (790)
.... .. ....|||||++|+..+.. ..|++.|+.+++... +... + ... ..+|+|
T Consensus 316 lt~~---g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-----~----~~~--~p~~SP- 377 (419)
T PRK04043 316 VVFH---GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-----G----VNQ--FPRFSS- 377 (419)
T ss_pred CccC---CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-----C----CcC--CeEECC-
Confidence 3321 11 124899999998866543 378999999887543 3211 1 112 578999
Q ss_pred CCCEEEEEeCC-C--cEEEEecCCC
Q 003871 744 EPNRIALGLTN-G--RVHVIEPLES 765 (790)
Q Consensus 744 d~~~las~s~D-g--~i~iW~~~~~ 765 (790)
||++++..+.+ + .+.+.++..+
T Consensus 378 DG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 378 DGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCCEEEEEEccCCcEEEEEEecCCC
Confidence 89887766543 3 3555666443
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.04 E-value=2.1e-07 Score=112.38 Aligned_cols=254 Identities=11% Similarity=0.044 Sum_probs=159.1
Q ss_pred EEEEec--Cc-EEEEec-CCeEEEEECCCCcEEEEEcC--C------------CCCeEEEEEcCCC-eEEEEe-CCCcEE
Q 003871 510 SCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFAN--P------------PPIATYFILLPQD-LFAFGF-DDSSIL 569 (790)
Q Consensus 510 ~~l~~s--~~-~l~s~s-dg~I~vwd~~~~~~~~~~~~--~------------~~~v~~l~~s~~g-~l~sgs-~dg~I~ 569 (790)
..++++ ++ ++++-+ ++.|+++|.. +..+..+.+ . -.....+++++++ .|+++. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 456776 34 444444 7899999986 555444432 1 1124788999887 655554 456899
Q ss_pred EEeCCCCceEEEEcCC-----------------CCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeecee--eeee
Q 003871 570 VHCPCTKKTKAKLKGH-----------------QNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKF--LHSF 629 (790)
Q Consensus 570 iwd~~~~~~~~~l~~h-----------------~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~--l~~~ 629 (790)
++|..++. +..+.+- -.....++++| ++..+++.+.++.|++||..++....... ....
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 99987764 3333210 01246799999 56667777788999999998754211000 0000
Q ss_pred ccCCCC---CCCCeEEEEEeCCCCEEEEE--eCCcEEEEECCCCceeeeecC-----------CC--------CCCCeEE
Q 003871 630 QTGLVP---ETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVP-----------DK--------MDLPITY 685 (790)
Q Consensus 630 ~~~~~~---~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~~~~~~~~~~~-----------~~--------h~~~v~~ 685 (790)
..++.. .-.....++++|++..|+++ .++.|++||+.++.......+ .. .......
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 000000 00245679999999876663 678999999987653211100 00 0123468
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccc--cCCCCc--ccccceEEEEEecCCCCEEEEEeCCCcEEEEe
Q 003871 686 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY--AQPGTI--SLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 761 (790)
Q Consensus 686 l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~--~~~gh~--~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~ 761 (790)
++++++|+.+++-+.++.|++||..++....... ... ...|.. ..--.+..++++| +|+++++-+.+++|++|+
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 9999999988888899999999999887654331 110 000000 0001245899999 899999989999999999
Q ss_pred cCCCcc
Q 003871 762 PLESEV 767 (790)
Q Consensus 762 ~~~~~~ 767 (790)
+.+++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 988764
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=7.8e-08 Score=100.31 Aligned_cols=298 Identities=9% Similarity=0.070 Sum_probs=183.5
Q ss_pred ccccCCC------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 003871 334 CINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSA 407 (790)
Q Consensus 334 ~i~fspd------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~ 407 (790)
-+.|||. -....|. +|--.+-..+ +.+ .|++. ..+.|| |..+||
T Consensus 215 yv~wSP~GTYL~t~Hk~GI~--lWGG~~f~r~--------~RF-~Hp~V--------q~idfS-------P~EkYL---- 264 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQGIA--LWGGESFDRI--------QRF-YHPGV--------QFIDFS-------PNEKYL---- 264 (698)
T ss_pred eEEecCCceEEEEEecccee--eecCccHHHH--------Hhc-cCCCc--------eeeecC-------CccceE----
Confidence 6778887 2233466 6754444333 333 36554 678898 889999
Q ss_pred eeccC-----------CCceEeeeccccCCCCcee-eeeccCCCCCCce-EEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 003871 408 VCAKS-----------LEKSVNLKLQLINEPSECR-TLLLPDNSFGGRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (790)
Q Consensus 408 at~s~-----------d~~i~iwd~~~~~~~~~~~-~~~l~~~~h~~~V-~~l~~spdg~~l~s~~~dg~i~vw~~~~~~ 474 (790)
+|-+. ...++|||+.+ +... .+..+. ....+ .-+.||.|++|+|-... .+|.||+..+-.
T Consensus 265 VT~s~~p~~~~~~d~e~~~l~IWDI~t----G~lkrsF~~~~--~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~ 337 (698)
T KOG2314|consen 265 VTYSPEPIIVEEDDNEGQQLIIWDIAT----GLLKRSFPVIK--SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM 337 (698)
T ss_pred EEecCCccccCcccCCCceEEEEEccc----cchhcceeccC--CCccccceEEeccCCceeEEecc-ceEEEEecCcee
Confidence 87653 25799999984 4433 222211 12223 24579999999988776 568888766522
Q ss_pred ccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec---C---CeEEEEECCCCcEEEEEcCCCC
Q 003871 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---G---GKISIFSLETFQTLATFANPPP 546 (790)
Q Consensus 475 ~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s---d---g~I~vwd~~~~~~~~~~~~~~~ 546 (790)
...++ . -.-..|....|+ ++.||.-. + ..+.+..+.+++.+++-.-+.-
T Consensus 338 lld~K----------------s-------lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV 394 (698)
T KOG2314|consen 338 LLDKK----------------S-------LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV 394 (698)
T ss_pred eeccc----------------c-------cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee
Confidence 21111 0 134567777888 66666544 1 3677778877777776554443
Q ss_pred CeEEEEEcCCC-eEEEE----------eCCCcEEEEeCCCCce-EEEEcCCCCCEEEEEEeCCCCEEEEEeC---CCcEE
Q 003871 547 IATYFILLPQD-LFAFG----------FDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLC 611 (790)
Q Consensus 547 ~v~~l~~s~~g-~l~sg----------s~dg~I~iwd~~~~~~-~~~l~~h~~~v~~l~~spdg~~l~s~s~---dg~I~ 611 (790)
.=..+-|-.+| +|+.- +.-..+.|+.++.... +..+. -...|...+|-|.|+.+++-+. ..++.
T Consensus 395 sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvs 473 (698)
T KOG2314|consen 395 SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVS 473 (698)
T ss_pred eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEcccccccee
Confidence 33456677777 66532 1112455666654432 33332 3467889999999988776543 35788
Q ss_pred EEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE----eCCcEEEEECCCCceeeeecCCCCCCCeEEEE
Q 003871 612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT 687 (790)
Q Consensus 612 vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~----~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~ 687 (790)
+|.+++... ....+..+.. ...+.+.|+|.|++++++ ..|.+..+|..-..+..+-.+ . ....+.+.
T Consensus 474 fY~~e~~~~-~~~lVk~~dk------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~-e-h~~at~ve 544 (698)
T KOG2314|consen 474 FYAVETNIK-KPSLVKELDK------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP-E-HFAATEVE 544 (698)
T ss_pred EEEeecCCC-chhhhhhhcc------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc-c-ccccccce
Confidence 998885211 1222332333 256789999999999873 478899999874333222211 1 34567899
Q ss_pred EecCCCEEEEEEcC
Q 003871 688 YSCDGKCIYVSCKS 701 (790)
Q Consensus 688 ~s~dg~~l~sgs~d 701 (790)
|.|.|+|+++++.-
T Consensus 545 WDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 545 WDPTGRYVVTSSSS 558 (698)
T ss_pred ECCCCCEEEEeeeh
Confidence 99999999998863
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.00 E-value=1.3e-09 Score=126.99 Aligned_cols=177 Identities=11% Similarity=0.146 Sum_probs=137.9
Q ss_pred CCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 003871 396 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 475 (790)
Q Consensus 396 ~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~ 475 (790)
+.|-..+. +||+.||.|++|.... ..++..+. .+....|+.+.|+.+|+....+..||.+.+|.......
T Consensus 2216 sHp~~~~Y----ltgs~dgsv~~~~w~~---~~~v~~~r---t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~ 2285 (2439)
T KOG1064|consen 2216 SHPSDPYY----LTGSQDGSVRMFEWGH---GQQVVCFR---TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY 2285 (2439)
T ss_pred CCCCCceE----EecCCCceEEEEeccC---CCeEEEee---ccCcchhhhhhhcccCCceeeeccCCceeecccCCcce
Confidence 44666666 9999999999999863 33333333 23348999999999999999999999999998663211
Q ss_pred cccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec----CCeEEEEECCCC---cEEEEEcCCCCCe
Q 003871 476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS----GGKISIFSLETF---QTLATFANPPPIA 548 (790)
Q Consensus 476 ~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s----dg~I~vwd~~~~---~~~~~~~~~~~~v 548 (790)
+....|+.....+.|-+..+++++ ++.+.+||.--. .++. ..|.+++
T Consensus 2286 ------------------------~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~ga 2339 (2439)
T KOG1064|consen 2286 ------------------------TSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGA 2339 (2439)
T ss_pred ------------------------eccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCc
Confidence 112257888888888887777766 478999996432 2333 7899999
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 003871 549 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (790)
Q Consensus 549 ~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 618 (790)
+++++.|.. .+++|+.+|.|++||++..+.++.++. ++ ...++++|+..|.++||++..-
T Consensus 2340 T~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2340 TVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred eEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 999999999 999999999999999998877766553 33 4568999999999999999873
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.97 E-value=4.9e-07 Score=109.29 Aligned_cols=257 Identities=9% Similarity=-0.014 Sum_probs=156.9
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEecCCCCc-cccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEE
Q 003871 445 VRLIYSHS-GDFLVALTQTATHKLWKWQSNKQ-SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 520 (790)
Q Consensus 445 ~~l~~spd-g~~l~s~~~dg~i~vw~~~~~~~-~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~ 520 (790)
..++++++ |+..++-+.++.|++||...... ..+... ......|.. ....-.....++++ ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g------~~G~~dG~~-----~~a~f~~P~GIavd~~gn~LY 639 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTG------EEGLRDGSF-----EDATFNRPQGLAYNAKKNLLY 639 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCC------CcCCCCCch-----hccccCCCcEEEEeCCCCEEE
Confidence 46788875 55555556688999998764321 000000 000000110 00123346788887 66666
Q ss_pred Eec--CCeEEEEECCCCcEEEEEcCC-----------------CCCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCceE
Q 003871 521 SAS--GGKISIFSLETFQTLATFANP-----------------PPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTK 579 (790)
Q Consensus 521 s~s--dg~I~vwd~~~~~~~~~~~~~-----------------~~~v~~l~~s~~-g-~l~sgs~dg~I~iwd~~~~~~~ 579 (790)
++. .+.|+++|..++. +.++.+. -.....++++|+ + .+++.+.++.|++||..++...
T Consensus 640 VaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~ 718 (1057)
T PLN02919 640 VADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR 718 (1057)
T ss_pred EEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 655 5789999987654 3333210 112367999995 4 6677778889999998876542
Q ss_pred EEEcCC---------------CCCEEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceeece--------eeeeeccCCC-
Q 003871 580 AKLKGH---------------QNRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSK--------FLHSFQTGLV- 634 (790)
Q Consensus 580 ~~l~~h---------------~~~v~~l~~spdg~~-l~s~s~dg~I~vwd~~~~~~~~~~--------~l~~~~~~~~- 634 (790)
.+.+. -...+.++++|+++. +++-+.++.|++||+.++...... .+..+.....
T Consensus 719 -~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~ 797 (1057)
T PLN02919 719 -VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV 797 (1057)
T ss_pred -EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc
Confidence 22111 123567999999985 455566789999999875421100 0000000000
Q ss_pred ---CCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCC-----------CCCCCeEEEEEecCCCEEEEEE
Q 003871 635 ---PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-----------KMDLPITYATYSCDGKCIYVSC 699 (790)
Q Consensus 635 ---~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~-----------~h~~~v~~l~~s~dg~~l~sgs 699 (790)
..-.....++++++|..+++ ..++.|++||..++......... ........++++++|+.+++-+
T Consensus 798 g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 798 GSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT 877 (1057)
T ss_pred hhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence 00013468999999987666 47889999999877654332111 0123578899999999988988
Q ss_pred cCCeEEEEECCCCeE
Q 003871 700 KSGHVKVFDTSTLEL 714 (790)
Q Consensus 700 ~dg~i~vwd~~~~~~ 714 (790)
.++.|++||+.+++.
T Consensus 878 ~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 878 NNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCEEEEEECCCCcc
Confidence 999999999999865
No 279
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.96 E-value=2.2e-07 Score=94.13 Aligned_cols=225 Identities=18% Similarity=0.125 Sum_probs=140.8
Q ss_pred CCeEEEEECCCCcEEEEEcCC--CCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEE
Q 003871 524 GGKISIFSLETFQTLATFANP--PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 601 (790)
Q Consensus 524 dg~I~vwd~~~~~~~~~~~~~--~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l 601 (790)
+|+|..||..+|+.+.+.... .....+..+..++.+++++.++.++.||..+|+.+..+.. .+.+.... ..++..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence 578999999999999988642 1222222332333777778999999999999998877764 22211111 2245567
Q ss_pred EEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCC
Q 003871 602 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD 680 (790)
Q Consensus 602 ~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~ 680 (790)
+.++.++.++.+|..+|+..........+.... .......+ ++..++++ .++.|..+|+++|+.+-........
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV---RSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCST---B--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred ccccceeeeEecccCCcceeeeecccccccccc---ccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 777788899999999987655422210001000 11222333 36667765 5899999999999998777552211
Q ss_pred --CC------eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEe
Q 003871 681 --LP------ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 752 (790)
Q Consensus 681 --~~------v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s 752 (790)
.. +..-....++ .++.++.++.+..+|+.+++.+..... . ... . ...+ ++..|+.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~---------~-~~~--~-~~~~-~~~~l~~~~ 219 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPI---------S-GIY--S-LPSV-DGGTLYVTS 219 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECS---------S--EC--E-CEEC-CCTEEEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecC---------C-Ccc--C-Ccee-eCCEEEEEe
Confidence 11 1122222344 777777777544449999986543221 1 112 2 1334 677888888
Q ss_pred CCCcEEEEecCCCccccc
Q 003871 753 TNGRVHVIEPLESEVEWG 770 (790)
Q Consensus 753 ~Dg~i~iW~~~~~~~~w~ 770 (790)
.++.|..||+.+|+..|.
T Consensus 220 ~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 220 SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCCCCEEeE
Confidence 999999999999999996
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.96 E-value=1.9e-07 Score=89.09 Aligned_cols=241 Identities=10% Similarity=0.052 Sum_probs=155.1
Q ss_pred CcEEEEec-CCeEEEEECCCCcEEE-EEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEE
Q 003871 516 GSHLFSAS-GGKISIFSLETFQTLA-TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 591 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~ 591 (790)
..+|+.|+ .|...+|...+.+... ....+...|+-+.-.-+. .+..++.|.++++.++..+.....+....-.+++
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 34688887 7999999998655432 223344433222211122 6777888999998888755433332211123889
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCce
Q 003871 592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH 670 (790)
Q Consensus 592 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~ 670 (790)
+++++|++++++.++...|..|.+......... +. ....+ ..-.+..|+.....+|++ .||++.|||++....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~--~a~t~---D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IY--EAPTS---DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeee-eE--ecccC---CCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 999999999999999999999998763211111 11 11111 345678899999899985 999999999986543
Q ss_pred eeee---cCCCCCCCeEEEEEecCCC--EEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCC
Q 003871 671 TSQL---VPDKMDLPITYATYSCDGK--CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 745 (790)
Q Consensus 671 ~~~~---~~~~h~~~v~~l~~s~dg~--~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 745 (790)
.... ..++|.+.+..+.|++.|. +|...-.-+.+.+-|++++...+.+.+..-....|....+. ...|+. ++
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~n 314 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-EN 314 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-CC
Confidence 2221 1234799999999998764 45555556889999999998776665432222233333355 677777 55
Q ss_pred CEEEEEeCCCcEEEEecCCCc
Q 003871 746 NRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 746 ~~las~s~Dg~i~iW~~~~~~ 766 (790)
.-..+.+++ .+.-|++.++.
T Consensus 315 ~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 315 ESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred cccccccch-hhheeeccccc
Confidence 555555444 45667766654
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.95 E-value=6.4e-09 Score=121.43 Aligned_cols=192 Identities=14% Similarity=0.234 Sum_probs=150.7
Q ss_pred CCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE
Q 003871 505 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 579 (790)
Q Consensus 505 ~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~ 579 (790)
+-..|.++.-+ ..+.++|+ ||.+++|....++.+..++ .....|+.+.|+.+| .+.++..||.+.+|... .++.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence 34455555555 55777777 9999999998888887775 233788999999999 99999999999999987 6667
Q ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEe---CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-
Q 003871 580 AKLKGHQNRITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI- 655 (790)
Q Consensus 580 ~~l~~h~~~v~~l~~spdg~~l~s~s---~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~- 655 (790)
...+.|....+++.|-. ..+++++ +++.+.+||..-... ... +...|. +.++++++-|....|++|
T Consensus 2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~--~s~---v~~~H~---~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM--NSL---VHTCHD---GGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc--cce---eeeecC---CCceEEEEcCcceEEEecC
Confidence 77788999999998875 5666654 478899999764211 111 335666 799999999999999995
Q ss_pred eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003871 656 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 656 ~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~ 719 (790)
.+|.|++||++..+.++++.. +. ...++++|+..|.++||++..-.+++.+.
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 899999999998887776642 44 56799999999999999999887777664
No 282
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=7.4e-08 Score=103.00 Aligned_cols=266 Identities=11% Similarity=0.056 Sum_probs=175.3
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCcee------eeecc--CCCCCCceEEEEEcCCCCEE
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECR------TLLLP--DNSFGGRVVRLIYSHSGDFL 456 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~------~~~l~--~~~h~~~V~~l~~spdg~~l 456 (790)
.|+.|. ....++ |+|+.||.+++-.+.......... .+.+. -.||...|.-+.|+.+.+.|
T Consensus 18 ~c~~WN-------ke~gyI----AcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL 86 (1189)
T KOG2041|consen 18 HCAEWN-------KESGYI----ACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL 86 (1189)
T ss_pred EEEEEc-------ccCCeE----EeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc
Confidence 789997 778899 999999999999886432111111 11111 15899999999999999888
Q ss_pred EEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECC
Q 003871 457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE 533 (790)
Q Consensus 457 ~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~ 533 (790)
-+...+|.|.||-+-.+.. + ...+.....+.|.+++|+ |..+.... ||.|.+=.++
T Consensus 87 TtSDt~GlIiVWmlykgsW--------------------~-EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSW--------------------C-EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD 145 (1189)
T ss_pred cccCCCceEEEEeeecccH--------------------H-HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec
Confidence 8888899999998776554 0 111112356778889998 77777776 7777666655
Q ss_pred CCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-------ceE----EEEcCCCCCEEEEEEe------
Q 003871 534 TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-------KTK----AKLKGHQNRITCLAYS------ 595 (790)
Q Consensus 534 ~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~-------~~~----~~l~~h~~~v~~l~~s------ 595 (790)
.. .+.--.-.......+.|++|. .+..+-..|.+.+||.+.. .+. ..+......|..+.|.
T Consensus 146 GN-RIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~ 224 (1189)
T KOG2041|consen 146 GN-RIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQP 224 (1189)
T ss_pred cc-eecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcccc
Confidence 32 222111112234578999999 7777888899999997532 111 1112122335555553
Q ss_pred --CCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeC---------CcEEEE
Q 003871 596 --LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE---------GQIDVY 663 (790)
Q Consensus 596 --pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~d---------g~I~iw 663 (790)
||...++.+..+|.+.+..-.+.. .++- +..+ -.+..+.|+++|..||+ |.+ +.|.+|
T Consensus 225 v~pdrP~lavcy~nGr~QiMR~eND~----~Pvv-~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy 294 (1189)
T KOG2041|consen 225 VPPDRPRLAVCYANGRMQIMRSENDP----EPVV-VDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY 294 (1189)
T ss_pred CCCCCCEEEEEEcCceehhhhhcCCC----CCeE-Eecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEe
Confidence 477889999999998876554421 2222 2333 36888999999999998 322 246777
Q ss_pred ECCCCceeeeecCCCCCCCeEEEEEecCCCEEE
Q 003871 664 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 696 (790)
Q Consensus 664 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 696 (790)
.. -|+.+.+++.+ +..|++++|-..|-.++
T Consensus 295 sp-~G~i~gtlkvp--g~~It~lsWEg~gLriA 324 (1189)
T KOG2041|consen 295 SP-YGHIVGTLKVP--GSCITGLSWEGTGLRIA 324 (1189)
T ss_pred cc-chhheEEEecC--CceeeeeEEcCCceEEE
Confidence 65 47777777653 67788888876554433
No 283
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=5.8e-09 Score=107.96 Aligned_cols=286 Identities=12% Similarity=0.127 Sum_probs=180.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCC---CCceeeeeccCCCCCCce
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINE---PSECRTLLLPDNSFGGRV 444 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~---~~~~~~~~l~~~~h~~~V 444 (790)
..+.||...| ..++-- .+.+.+ ++++.|++|++|.+..-.+ +..|+- +. +.|+.+|
T Consensus 729 ~nf~GH~~~i-------Rai~Ai-------dNENSF----iSASkDKTVKLWSik~EgD~~~tsaCQf-TY--~aHkk~i 787 (1034)
T KOG4190|consen 729 CNFTGHQEKI-------RAIAAI-------DNENSF----ISASKDKTVKLWSIKPEGDEIGTSACQF-TY--QAHKKPI 787 (1034)
T ss_pred ecccCcHHHh-------HHHHhc-------ccccce----eeccCCceEEEEEeccccCccccceeee-Eh--hhccCcc
Confidence 6678999988 666554 445667 9999999999999863211 222432 32 5699999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEe-
Q 003871 445 VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSA- 522 (790)
Q Consensus 445 ~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~- 522 (790)
.++.|-.+.++++++ ||.|.+||.--+.. ... -.|++.. +..+.|.|+.-. ...+..+
T Consensus 788 ~~igfL~~lr~i~Sc--D~giHlWDPFigr~-----Laq---~~dapk~----------~a~~~ikcl~nv~~~iliAgc 847 (1034)
T KOG4190|consen 788 HDIGFLADLRSIASC--DGGIHLWDPFIGRL-----LAQ---MEDAPKE----------GAGGNIKCLENVDRHILIAGC 847 (1034)
T ss_pred cceeeeeccceeeec--cCcceeecccccch-----hHh---hhcCccc----------CCCceeEecccCcchheeeec
Confidence 999999998877655 78899998543322 100 1122211 233344444433 4445555
Q ss_pred c-CCeEEEEECCCCcEEEEEc-----CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEe
Q 003871 523 S-GGKISIFSLETFQTLATFA-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 595 (790)
Q Consensus 523 s-dg~I~vwd~~~~~~~~~~~-----~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~s 595 (790)
+ ..+|+++|.+.++....++ ++...+.+++..+.| .+++|-.+|.|.+.|.++|+.+..++.-.-....++ .
T Consensus 848 saeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-a 926 (1034)
T KOG4190|consen 848 SAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-A 926 (1034)
T ss_pred cchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-C
Confidence 4 7899999999877665553 445668999999999 999999999999999999999888875444444443 3
Q ss_pred CCCCEEEEEeCCCcEEE-EECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeC-CcEEEEECC----CCc
Q 003871 596 LSLNVLVSSGADAQLCV-WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE-GQIDVYEAP----TLN 669 (790)
Q Consensus 596 pdg~~l~s~s~dg~I~v-wd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~d-g~I~iwd~~----~~~ 669 (790)
|..+.++....|.++.+ |..-.|.. .++ ..... .+..- ...-|.-+++... +.+.+|--. .-.
T Consensus 927 psdq~L~~saldHslaVnWhaldgim----h~q-~kppp----epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~s 995 (1034)
T KOG4190|consen 927 PSDQALAQSALDHSLAVNWHALDGIM----HLQ-DKPPP----EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAES 995 (1034)
T ss_pred chhHHHHhhcccceeEeeehhcCCee----eec-cCCCC----cchhh--hhccCceeEEeccCcEEEEEecchhhhhhh
Confidence 55567888888889888 87766432 111 10000 01110 0112444555433 334555311 011
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 003871 670 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 706 (790)
Q Consensus 670 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~v 706 (790)
.+..+.+....+..++++.-|-..-++.|.+.|.|.+
T Consensus 996 titKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 996 TITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 1223333334667788888887777778888888765
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=1.4e-08 Score=108.95 Aligned_cols=280 Identities=11% Similarity=0.078 Sum_probs=183.1
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCC--CEEEEEeCC
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG--DFLVALTQT 462 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg--~~l~s~~~d 462 (790)
..+..+ |-|+-+ |.++.-|- .+-|++. +.....+.. +-..-.|-.+.|+|.. .+-++..+.
T Consensus 28 ~a~si~-------p~grdi----~lAsr~gl-~i~dld~---p~~ppr~l~--h~tpw~vad~qws~h~a~~~wiVsts~ 90 (1081)
T KOG0309|consen 28 NAVSIN-------PSGRDI----VLASRQGL-YIIDLDD---PFTPPRWLH--HITPWQVADVQWSPHPAKPYWIVSTSN 90 (1081)
T ss_pred cceeec-------cccchh----hhhhhcCe-EEEeccC---CCCCceeee--ccCcchhcceecccCCCCceeEEecCc
Confidence 555666 889999 99988554 4557764 232222211 1112346677788753 344555555
Q ss_pred CcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCC-cE
Q 003871 463 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-QT 537 (790)
Q Consensus 463 g~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~-~~ 537 (790)
..-.+|++.... ...+.+. ..+|...|+.+.|. ...+++++ |-.+..||+++. ..
T Consensus 91 qkaiiwnlA~ss-------------------~~aIef~-lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p 150 (1081)
T KOG0309|consen 91 QKAIIWNLAKSS-------------------SNAIEFV-LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP 150 (1081)
T ss_pred chhhhhhhhcCC-------------------ccceEEE-EecCccceeccccCCCCCcceeeccccccceeeeccCCCcc
Confidence 566678765321 1122222 23799999999999 56788898 999999999875 34
Q ss_pred EEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEE
Q 003871 538 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWD 614 (790)
Q Consensus 538 ~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd 614 (790)
+..+..-....+.++|+-.. .+.+.+..+.|++||.+.| .++..+++|...|+.++|+. -...+.+++.|++|+.||
T Consensus 151 ~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~ 230 (1081)
T KOG0309|consen 151 FYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWD 230 (1081)
T ss_pred eeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeec
Confidence 45554445556789998877 6667777889999999876 56788899999999999976 234678899999999999
Q ss_pred CCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE--E-eCCcEEEEECC---------C-CceeeeecCCCCCC
Q 003871 615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAP---------T-LNHTSQLVPDKMDL 681 (790)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~--~-~dg~I~iwd~~---------~-~~~~~~~~~~~h~~ 681 (790)
...........+ ... .+|..-.+.|-|.-..+ . .+..+.+++.+ + .+++.+|.+ |..
T Consensus 231 y~kSt~e~~~~v---tt~-----~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G--H~D 300 (1081)
T KOG0309|consen 231 YSKSTTESKRTV---TTN-----FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG--HDD 300 (1081)
T ss_pred ccccccccceec---ccc-----CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC--cch
Confidence 986432222221 121 46777777775543333 2 33344444332 2 356778865 677
Q ss_pred CeEEEEEecCC----------CEEEEEEcCCeEEEEECCC
Q 003871 682 PITYATYSCDG----------KCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 682 ~v~~l~~s~dg----------~~l~sgs~dg~i~vwd~~~ 711 (790)
.|...-|-..+ -.|+|-+.|.++++|-+.+
T Consensus 301 ~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 301 VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 77666554322 2589999999999998764
No 285
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=1.2e-07 Score=102.59 Aligned_cols=290 Identities=11% Similarity=0.101 Sum_probs=188.7
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec----
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---- 515 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---- 515 (790)
|...-.++.|+|.|- +|.| ....|.+-|..+-+ .++ ..+.|...|+.+.|.
T Consensus 14 ~~sN~~A~Dw~~~GL-iAyg-shslV~VVDs~s~q---------------------~iq--sie~h~s~V~~VrWap~~~ 68 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSGL-IAYG-SHSLVSVVDSRSLQ---------------------LIQ--SIELHQSAVTSVRWAPAPS 68 (1062)
T ss_pred CcccccccccCccce-EEEe-cCceEEEEehhhhh---------------------hhh--ccccCccceeEEEeccCCC
Confidence 455577888999983 4444 44567776654422 111 123588899999987
Q ss_pred ----Cc------EEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCC---C--eEEEEeCCCcEEEEeCCCCceE
Q 003871 516 ----GS------HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ---D--LFAFGFDDSSILVHCPCTKKTK 579 (790)
Q Consensus 516 ----~~------~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~---g--~l~sgs~dg~I~iwd~~~~~~~ 579 (790)
+. .|+++. .|.|.+||...+..+..+..+..++..++|-+. . .+++-....++.+|+..+|+..
T Consensus 69 p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~ 148 (1062)
T KOG1912|consen 69 PRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF 148 (1062)
T ss_pred chhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee
Confidence 11 355566 799999999999888889888999988888653 2 5666667789999999999988
Q ss_pred EEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCc--eeeceeeeeeccCCCC-------------CC-C----
Q 003871 580 AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWK--KLCSKFLHSFQTGLVP-------------ET-T---- 638 (790)
Q Consensus 580 ~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~--~~~~~~l~~~~~~~~~-------------~~-~---- 638 (790)
...........|+.+.| |.+.+..-+..|.+.+-+.-... -...+.++ +...|.. +. .
T Consensus 149 Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts~~~sa 227 (1062)
T KOG1912|consen 149 WKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTSTPASA 227 (1062)
T ss_pred eccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccCCCcch
Confidence 77765556778899999 77777777777877776654311 11122333 3333221 00 0
Q ss_pred ----CeEEEEEeCCCCEEE-EEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC--CEEEEEEcCCeEEEEECCC
Q 003871 639 ----IVNHIQFHPDQIHLL-SIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG--KCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 639 ----~v~~i~~sp~~~~l~-~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~sgs~dg~i~vwd~~~ 711 (790)
....++|+|.-+.++ ......+.++|++-..++...... .+.+.-+.+-|++ ..|++.-.||.+.+|-.+.
T Consensus 228 ~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 228 YFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec--cCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 011256788655444 467788999999887887777654 3444555566654 5799999999999997665
Q ss_pred C----------------eEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 712 L----------------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 712 ~----------------~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
. +....+.+ ...+.+...+-.|.+...++.--.+|.+.+|.+.+|+
T Consensus 306 ~~~~f~~~~~~l~~dl~~Q~~~vr~---------m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 306 EPTEFKKPNASLSMDLGEQVHVVRP---------MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred cCccccccchhhccccccceEEEee---------chhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 2 11222111 1122233444456445566666678889999998654
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.87 E-value=2.5e-08 Score=106.99 Aligned_cols=281 Identities=12% Similarity=0.076 Sum_probs=177.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-----
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----- 515 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s----- 515 (790)
.+++.++..+|.|+-++.++.-| +.+-|+..... |.. .+.. -..-.|-.+.|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~----------ppr-------~l~h----~tpw~vad~qws~h~a~ 81 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT----------PPR-------WLHH----ITPWQVADVQWSPHPAK 81 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCC----------Cce-------eeec----cCcchhcceecccCCCC
Confidence 57788899999999999988866 44455543211 000 1110 011224455566
Q ss_pred CcEEEEecCCeEEEEECCC---CcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEEEcCCCCCE
Q 003871 516 GSHLFSASGGKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRI 589 (790)
Q Consensus 516 ~~~l~s~sdg~I~vwd~~~---~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~v 589 (790)
...+++.+...-.+|++.. ......+.+|...|+.+.|+|.. .+++++-|..+..||+++. .++..+..-....
T Consensus 82 ~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~a 161 (1081)
T KOG0309|consen 82 PYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAA 161 (1081)
T ss_pred ceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccC
Confidence 3456666666666888753 23444567899999999999998 9999999999999999876 3455555544567
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC--CCEEEEEeCCcEEEEECCC
Q 003871 590 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDVYEAPT 667 (790)
Q Consensus 590 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~--~~~l~~~~dg~I~iwd~~~ 667 (790)
..++|+.....+.+.+..+.|++||.+.|. .++..+. +|. ..|..+.|..- ++.+-++.|++|+.||...
T Consensus 162 sqVkwnyk~p~vlasshg~~i~vwd~r~gs----~pl~s~K-~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLASSHGNDIFVWDLRKGS----TPLCSLK-GHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred ceeeecccCcchhhhccCCceEEEeccCCC----cceEEec-ccc---eeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 889998844444445667889999999754 4444333 354 57888888653 3444446999999999875
Q ss_pred Cce--eeeecCCCCCCCeEEEEEecCCCEEEE--EEcCCeEEEEECC---------CC-eEEEEeccccccCCCCccccc
Q 003871 668 LNH--TSQLVPDKMDLPITYATYSCDGKCIYV--SCKSGHVKVFDTS---------TL-ELRCQINLTAYAQPGTISLEL 733 (790)
Q Consensus 668 ~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s--gs~dg~i~vwd~~---------~~-~~~~~~~~~~~~~~gh~~~~v 733 (790)
... -++.. ...+|+.-.+-|=|.-.+. .-.+..+.+++.+ ++ +.+..|. ||.+ .|
T Consensus 234 St~e~~~~vt---t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~-------GH~D-~V 302 (1081)
T KOG0309|consen 234 STTESKRTVT---TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV-------GHDD-VV 302 (1081)
T ss_pred cccccceecc---ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec-------Ccch-HH
Confidence 432 22222 2677888888875542222 1112244444333 22 4455555 6643 33
Q ss_pred ceEEEEEec--------C-CCCEEEEEeCCCcEEEEecCC
Q 003871 734 YPLVIAAHP--------L-EPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 734 ~~~~v~~sp--------~-d~~~las~s~Dg~i~iW~~~~ 764 (790)
- ..-|-- + ..-.|+|-|.|.++|+|.+.+
T Consensus 303 ~--eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 303 L--EFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred H--HHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 2 333322 1 123699999999999998864
No 287
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.87 E-value=1.4e-06 Score=95.37 Aligned_cols=286 Identities=9% Similarity=-0.008 Sum_probs=168.1
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCe-EEEEecCcEEEEec-CCeEEEE
Q 003871 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALRGSHLFSAS-GGKISIF 530 (790)
Q Consensus 453 g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V-~~l~~s~~~l~s~s-dg~I~vw 530 (790)
+..+++++.++.+.-+|..+++. +|......... .....+...+ ..+...+..++.++ +|.+..+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~------------~W~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~al 135 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKE------------IWSVDLSEKDG-WFSKNKSALLSGGVTVAGGKVYIGSEKGQVYAL 135 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcE------------eeEEcCCCccc-ccccccccccccccEEECCEEEEEcCCCEEEEE
Confidence 55677888888888888877665 56543222000 0000000111 12334455555665 8999999
Q ss_pred ECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEE-EEEEeC--CCCEEEEEeCC
Q 003871 531 SLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-CLAYSL--SLNVLVSSGAD 607 (790)
Q Consensus 531 d~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~-~l~~sp--dg~~l~s~s~d 607 (790)
|.++|+.+.+.........+.... ++.+++++.++.++-+|..+|+.+........... ...-+| .+..++.++.+
T Consensus 136 d~~tG~~~W~~~~~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~ 214 (394)
T PRK11138 136 NAEDGEVAWQTKVAGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN 214 (394)
T ss_pred ECCCCCCcccccCCCceecCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC
Confidence 999999988876433222222222 34677788899999999999998877653211100 000122 23356777889
Q ss_pred CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeC---CCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeE
Q 003871 608 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPIT 684 (790)
Q Consensus 608 g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp---~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~ 684 (790)
+.+..+|..+|+......+......+.. .....+.-+| ++..++++.+|.++.+|..+|+.+-+... ....
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~--~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~~~~ 288 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEI--DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY----GSVN 288 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccch--hcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC----CCcc
Confidence 9999999999876543332210000000 0011111122 34444446889999999999987644321 1111
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 685 YATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 685 ~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
.+. .++..++.++.+|.++.+|..+|+.+-..... + ..... +... .+.+|+.++.||.++..|..+
T Consensus 289 ~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-----~--~~~~~--sp~v---~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 289 DFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-----L--HRLLT--APVL---YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred CcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc-----C--CCccc--CCEE---ECCEEEEEeCCCEEEEEECCC
Confidence 222 34667888889999999999999875443210 0 00111 1111 245778889999999999999
Q ss_pred CccccccC
Q 003871 765 SEVEWGKL 772 (790)
Q Consensus 765 ~~~~w~~~ 772 (790)
|+..|...
T Consensus 355 G~~~~~~~ 362 (394)
T PRK11138 355 GRFVAQQK 362 (394)
T ss_pred CCEEEEEE
Confidence 99988753
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.86 E-value=3.3e-06 Score=92.36 Aligned_cols=259 Identities=9% Similarity=-0.018 Sum_probs=156.1
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEE
Q 003871 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 531 (790)
Q Consensus 453 g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd 531 (790)
+..++.++.++.+..+|..+++. +|....+.. ...+....+..++.+. ++.+..+|
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~------------~W~~~~~~~-----------~~ssP~v~~~~v~v~~~~g~l~ald 176 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEV------------AWQTKVAGE-----------ALSRPVVSDGLVLVHTSNGMLQALN 176 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCC------------cccccCCCc-----------eecCCEEECCEEEEECCCCEEEEEE
Confidence 45678888899999999887665 565432211 0111122344555555 89999999
Q ss_pred CCCCcEEEEEcCCCCCe-----EEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCC--C-----CEEEEEEeC--C
Q 003871 532 LETFQTLATFANPPPIA-----TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ--N-----RITCLAYSL--S 597 (790)
Q Consensus 532 ~~~~~~~~~~~~~~~~v-----~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~--~-----~v~~l~~sp--d 597 (790)
..+|+.+..+....... .+.... ++.++.++.+|.+..+|..+|+.+....... + ....+..+| .
T Consensus 177 ~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~ 255 (394)
T PRK11138 177 ESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV 255 (394)
T ss_pred ccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE
Confidence 99999998876432111 111111 2366677889999999999998765543110 0 011112233 3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCC
Q 003871 598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD 677 (790)
Q Consensus 598 g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~ 677 (790)
+..++.++.++.+..+|..+|+......+. ....+... ++..++.+.+|.++.+|..+|+.+-.....
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-----------~~~~~~~~-~~~vy~~~~~g~l~ald~~tG~~~W~~~~~ 323 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYG-----------SVNDFAVD-GGRIYLVDQNDRVYALDTRGGVELWSQSDL 323 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCC-----------CccCcEEE-CCEEEEEcCCCeEEEEECCCCcEEEccccc
Confidence 456777788999999999998755433221 11122222 333344468899999999998765433211
Q ss_pred CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcE
Q 003871 678 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV 757 (790)
Q Consensus 678 ~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i 757 (790)
. .....+... .+.+|+.++.||.+++.|..+|+.+...... ...+.. ...+ .+..|+.++.||.|
T Consensus 324 ~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~--------~~~~~s-~P~~---~~~~l~v~t~~G~l 388 (394)
T PRK11138 324 L-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD--------SSGFLS-EPVV---ADDKLLIQARDGTV 388 (394)
T ss_pred C-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC--------CCccee-CCEE---ECCEEEEEeCCceE
Confidence 1 111222222 2567888999999999999999988776431 111210 1111 23478888999999
Q ss_pred EEEec
Q 003871 758 HVIEP 762 (790)
Q Consensus 758 ~iW~~ 762 (790)
+.+++
T Consensus 389 ~~~~~ 393 (394)
T PRK11138 389 YAITR 393 (394)
T ss_pred EEEeC
Confidence 88765
No 289
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=1.6e-08 Score=100.79 Aligned_cols=119 Identities=15% Similarity=0.186 Sum_probs=101.8
Q ss_pred chhHHHHHHHHHHHHhcHHHHHHHHHHhcCCc--------hhHHHHHHHHhcCCHHHHHHHhcccc-cccCCcccceeee
Q 003871 12 TYTHLITLIMKFLEEENFKESLQALEQESKIF--------FNVHRFGEIVMNGEWEKAEKYLSAFT-KLDDSNHSKKMFF 82 (790)
Q Consensus 12 ~~~e~~~li~q~l~~~g~~~s~~~l~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~f 82 (790)
.|.-+-|+|+.||-.+||-+||..|-++|.+. .++..++++|++|+...|+.-.+.-. .+. +.+..+-|
T Consensus 114 ~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf 191 (389)
T KOG0396|consen 114 PRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEF 191 (389)
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhh
Confidence 46778999999999999999999999999988 25889999999999999988876542 111 11123779
Q ss_pred hhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhccccc
Q 003871 83 ELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDL 132 (790)
Q Consensus 83 ~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~ 132 (790)
.++.|+|+||++.+++.+|+.+.++.++|........++....+|.++..
T Consensus 192 ~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~ 241 (389)
T KOG0396|consen 192 QLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKY 241 (389)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccc
Confidence 99999999999999999999999999999977788999999999999765
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=2.3e-06 Score=93.34 Aligned_cols=169 Identities=7% Similarity=-0.063 Sum_probs=105.3
Q ss_pred EEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCC--CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEE
Q 003871 527 ISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDD--SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV 602 (790)
Q Consensus 527 I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~-sgs~d--g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~ 602 (790)
|.++|+.+++...... ..+......|+||| .++ +.+.+ ..|+++|+.+++. ..+..+........|+|||+.|+
T Consensus 215 Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~ 292 (419)
T PRK04043 215 LYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIV 292 (419)
T ss_pred EEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEE
Confidence 4466666655433332 34445667899999 444 44433 4788889887764 34544443344568999999888
Q ss_pred EEeCC-C--cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-Ee-C--------CcEEEEECCCCc
Q 003871 603 SSGAD-A--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-E--------GQIDVYEAPTLN 669 (790)
Q Consensus 603 s~s~d-g--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~-d--------g~I~iwd~~~~~ 669 (790)
..+.. + .|.+.|+.+++.. .+. ..+ .. ...|+|||+.++. +. . ..|.+.|+.++.
T Consensus 293 F~Sdr~g~~~Iy~~dl~~g~~~---rlt--~~g-----~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 293 FVSDRLGYPNIFMKKLNSGSVE---QVV--FHG-----KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred EEECCCCCceEEEEECCCCCeE---eCc--cCC-----Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 77642 2 6888888876531 111 111 11 2489999999987 32 2 368999998776
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCCe
Q 003871 670 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLE 713 (790)
Q Consensus 670 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d---g~i~vwd~~~~~ 713 (790)
. +.+... .......|+|||+.|+..+.+ ..+.+.++....
T Consensus 361 ~-~~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 361 I-RRLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred e-EECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 4 444332 223358899999988765543 246677776543
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.83 E-value=7.4e-07 Score=85.10 Aligned_cols=233 Identities=7% Similarity=-0.053 Sum_probs=145.4
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeE---EEEec-CcEEEEecCCeEE
Q 003871 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS---CFALR-GSHLFSASGGKIS 528 (790)
Q Consensus 453 g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~---~l~~s-~~~l~s~sdg~I~ 528 (790)
-.+||.||..|...+|...+... ..... ..+...|+ ..+-+ ...+++..|.+++
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~-------------------h~~~c---d~snn~v~~~~r~cd~~~~~~i~sndht~k 141 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDG-------------------HLYQC---DVSNNDVTLVKRYCDLKFPLNIASNDHTGK 141 (344)
T ss_pred ccEEEeccccceeeeecccCccc-------------------ceeee---cccccchhhhhhhcccccceeeccCCccee
Confidence 34799999999999998876433 00000 01222111 11112 2333333488888
Q ss_pred EEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceE-E-EEcCCCCCEEEEEEeCCCCEEEEE
Q 003871 529 IFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTK-A-KLKGHQNRITCLAYSLSLNVLVSS 604 (790)
Q Consensus 529 vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~-~~~-~-~l~~h~~~v~~l~~spdg~~l~s~ 604 (790)
+.+++-+..........-.+.++++++|+ ++++.++...|..|.+... +.+ . .....++.-.+..|+.....+|++
T Consensus 142 ~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 142 TMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVV 221 (344)
T ss_pred EEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEE
Confidence 88876443322222112237899999999 8888888899999988653 222 2 223334455678899988999999
Q ss_pred eCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCC--EEEEE-eCCcEEEEECCCCceeeeecCCC---
Q 003871 605 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI--HLLSI-HEGQIDVYEAPTLNHTSQLVPDK--- 678 (790)
Q Consensus 605 s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~--~l~~~-~dg~I~iwd~~~~~~~~~~~~~~--- 678 (790)
..||++.|||++....... ........|. +.+..+.|+|.|. +|..+ .-+.+++.|+++++..+.+....
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~-~~sstrp~hn---Ga~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~ 297 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMA-EISSTRPHHN---GAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVE 297 (344)
T ss_pred ecCCcEEEEEecccccchh-hhcccCCCCC---CceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccc
Confidence 9999999999997321111 1111122344 8999999998663 34445 67789999999988766654432
Q ss_pred --C-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003871 679 --M-DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 679 --h-~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
| ...|....|+.++.-+.+.+++ .+.=|++.+.
T Consensus 298 ~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 298 RKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred ccccccccccccccCCCcccccccch-hhheeecccc
Confidence 1 2457778888777666655443 3445555543
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=2.1e-08 Score=103.92 Aligned_cols=282 Identities=15% Similarity=0.151 Sum_probs=175.5
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-C
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G 516 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~ 516 (790)
.||+..|..++--.+.+-+++++.|+++++|.+.......|. ..+ +.+ ...|..+|.++.|- +
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t--------------saC-QfT-Y~aHkk~i~~igfL~~ 795 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT--------------SAC-QFT-YQAHKKPIHDIGFLAD 795 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc--------------cee-eeE-hhhccCcccceeeeec
Confidence 479999999987777888999999999999998764331111 111 111 12699999999999 5
Q ss_pred cEEEEecCCeEEEEECCCCcEEEEEc--CCCCCeEEEEEcCC--C--eEEEEeCCCcEEEEeCCCCceEEEEc-----CC
Q 003871 517 SHLFSASGGKISIFSLETFQTLATFA--NPPPIATYFILLPQ--D--LFAFGFDDSSILVHCPCTKKTKAKLK-----GH 585 (790)
Q Consensus 517 ~~l~s~sdg~I~vwd~~~~~~~~~~~--~~~~~v~~l~~s~~--g--~l~sgs~dg~I~iwd~~~~~~~~~l~-----~h 585 (790)
..-+..+||.|++||.--|+.+..+. ...+.+..+..-++ . .++.++...+|+++|.+.++....++ +.
T Consensus 796 lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 796 LRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred cceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 54455558899999998887766443 11223333333343 3 44555888999999999887665554 34
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeec-eeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEE-
Q 003871 586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS-KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDV- 662 (790)
Q Consensus 586 ~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~-~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~i- 662 (790)
...+.+++..|.|++++.+-.+|.|.+.|.++|+.+.. +++. .....++ .|....++. ..|.++.+
T Consensus 876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme----------cdllqla-apsdq~L~~saldHslaVn 944 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME----------CDLLQLA-APSDQALAQSALDHSLAVN 944 (1034)
T ss_pred chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc----------chhhhhc-CchhHHHHhhcccceeEee
Confidence 46688999999999999999999999999999774432 1211 1222222 244455555 37777777
Q ss_pred EECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC----eEEEEeccccccCCCCcccccceEEE
Q 003871 663 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL----ELRCQINLTAYAQPGTISLELYPLVI 738 (790)
Q Consensus 663 wd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~----~~~~~~~~~~~~~~gh~~~~v~~~~v 738 (790)
|..-.+....+..+.. .+..- ...-|.-++++...+.+.+|.-... ..+..+.+.. .+| . .+++
T Consensus 945 Whaldgimh~q~kppp--epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~--f~G----~--lTal 1012 (1034)
T KOG4190|consen 945 WHALDGIMHLQDKPPP--EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDE--FPG----T--LTAL 1012 (1034)
T ss_pred ehhcCCeeeeccCCCC--cchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccc--cCC----c--ccee
Confidence 8776665544443221 11100 0122455777776677777742211 1111222111 112 2 3377
Q ss_pred EEecCCCCEEEEEeCCCcEEE
Q 003871 739 AAHPLEPNRIALGLTNGRVHV 759 (790)
Q Consensus 739 ~~sp~d~~~las~s~Dg~i~i 759 (790)
+--|- ..-+..|...|.|.+
T Consensus 1013 a~LPL-N~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1013 APLPL-NCAFLAGNEHGAIAL 1032 (1034)
T ss_pred eeccc-cchhhccCCCCceee
Confidence 77784 444555777788775
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.82 E-value=1.7e-06 Score=84.22 Aligned_cols=216 Identities=13% Similarity=0.126 Sum_probs=131.5
Q ss_pred EEEcCCCeEEEEeCCCcEEEEeCCCC--ceEEEEcCC---CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeecee
Q 003871 551 FILLPQDLFAFGFDDSSILVHCPCTK--KTKAKLKGH---QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 625 (790)
Q Consensus 551 l~~s~~g~l~sgs~dg~I~iwd~~~~--~~~~~l~~h---~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~ 625 (790)
++.+.+|.+++.-.|..|.|-..++. ..+.+..-. .-.=..++||||+..||.+...|+|++||+.+.......+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP 82 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc
Confidence 45667774444456777777655442 222222222 2235679999999999999999999999998733221111
Q ss_pred eeeeccCCCCCCCCeEEEEEeCCC-------CEEEEEeCCcEEEEECCC-----CceeeeecCCC-CCCCeEEEEEecCC
Q 003871 626 LHSFQTGLVPETTIVNHIQFHPDQ-------IHLLSIHEGQIDVYEAPT-----LNHTSQLVPDK-MDLPITYATYSCDG 692 (790)
Q Consensus 626 l~~~~~~~~~~~~~v~~i~~sp~~-------~~l~~~~dg~I~iwd~~~-----~~~~~~~~~~~-h~~~v~~l~~s~dg 692 (790)
-......-. ..|..+.|-+.. .+|+...+|.++-|-+.. .+...++.... +...|.++.|+|.-
T Consensus 83 ~~~~~~d~~---~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 83 AMSFPGDLS---DAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred ccccCCccc---cceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 110111111 467777775532 455557888877666432 22333443322 36789999999998
Q ss_pred CEEEEEEcC-----------CeEEEEECCCCeEEEEec---------------------cccccCCCCcccccceEEEEE
Q 003871 693 KCIYVSCKS-----------GHVKVFDTSTLELRCQIN---------------------LTAYAQPGTISLELYPLVIAA 740 (790)
Q Consensus 693 ~~l~sgs~d-----------g~i~vwd~~~~~~~~~~~---------------------~~~~~~~gh~~~~v~~~~v~~ 740 (790)
++|+.||.. .-+..|.+-++.+-.... ...|...+.....|+ .++.
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmSl 237 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMSL 237 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEEE
Confidence 888877642 136677665443221110 001111232344555 8999
Q ss_pred ecCCCCEEEEEeCCCcEEEEecCCCc--cccccC
Q 003871 741 HPLEPNRIALGLTNGRVHVIEPLESE--VEWGKL 772 (790)
Q Consensus 741 sp~d~~~las~s~Dg~i~iW~~~~~~--~~w~~~ 772 (790)
|| ||..||+...+|.|.+|++.+-. ..|...
T Consensus 238 SP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 238 SP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 99 99999999999999999998764 447654
No 294
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.82 E-value=4.3e-06 Score=99.33 Aligned_cols=235 Identities=14% Similarity=0.195 Sum_probs=154.2
Q ss_pred CCCCeEEEEec--CcEEEEec-CCeEEEE----ECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC
Q 003871 505 PKDSISCFALR--GSHLFSAS-GGKISIF----SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK 576 (790)
Q Consensus 505 ~~~~V~~l~~s--~~~l~s~s-dg~I~vw----d~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~ 576 (790)
....|.++.+- ...++.+. +|.|.+. +..+.. +...-.-+.+|.+++||||+ .++..+.++++.+.+.. .
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-f 151 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-F 151 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-c
Confidence 45678888887 44444444 8888888 544332 22222346789999999999 88888888888776422 1
Q ss_pred ce----------------E--------EEEcC------------------------CCCCEEEEEEeCCCCEEEEEeC--
Q 003871 577 KT----------------K--------AKLKG------------------------HQNRITCLAYSLSLNVLVSSGA-- 606 (790)
Q Consensus 577 ~~----------------~--------~~l~~------------------------h~~~v~~l~~spdg~~l~s~s~-- 606 (790)
.+ + ..|.| +...-..++|-.||.++|+.+-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 10 0 11111 1223456889999999998764
Q ss_pred -C---CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE----eCCcEEEEECCCCceeeeecCC-
Q 003871 607 -D---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPTLNHTSQLVPD- 677 (790)
Q Consensus 607 -d---g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~----~dg~I~iwd~~~~~~~~~~~~~- 677 (790)
. +.++||+-+. . ++...+.-. +--.+++|.|.|.++|+. ....|.+|.- +|-....|...
T Consensus 232 ~~~~~R~iRVy~ReG-~------L~stSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~ 300 (928)
T PF04762_consen 232 ETGSRRVIRVYSREG-E------LQSTSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRF 300 (928)
T ss_pred CCCceeEEEEECCCc-e------EEeccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCC
Confidence 2 5799999874 2 221222111 334578999999999985 2345778875 45544555432
Q ss_pred -CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC
Q 003871 678 -KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 754 (790)
Q Consensus 678 -~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~--~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D 754 (790)
.....|..++|++|+..||..-.|. |.+|-..+.. +.+.+... ....+. .+.|+|.+...|...+.+
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~-------~~~~~~--~~~Wdpe~p~~L~v~t~~ 370 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS-------SSESVN--FVKWDPEKPLRLHVLTSN 370 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc-------CCCCCC--ceEECCCCCCEEEEEecC
Confidence 2367899999999999999977666 9999998875 33333321 122233 599999777778888887
Q ss_pred CcEEEEec
Q 003871 755 GRVHVIEP 762 (790)
Q Consensus 755 g~i~iW~~ 762 (790)
|.+..++.
T Consensus 371 g~~~~~~~ 378 (928)
T PF04762_consen 371 GQYEIYDF 378 (928)
T ss_pred CcEEEEEE
Confidence 87766554
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.77 E-value=2.6e-05 Score=79.31 Aligned_cols=215 Identities=19% Similarity=0.113 Sum_probs=134.1
Q ss_pred EEEec---CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEc-CCCeEEEEeCCCcEEEEeCCCCceEEEEcC-
Q 003871 511 CFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL-PQDLFAFGFDDSSILVHCPCTKKTKAKLKG- 584 (790)
Q Consensus 511 ~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s-~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~- 584 (790)
+++|. +.++++-. .+.|..|+..+++... +.... ...+++. +++.++++...+ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 34555 33444443 7899999998765433 33222 5677777 666555555544 55669988855433322
Q ss_pred ----CCCCEEEEEEeCCCCEEEEEeCC--------CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEE
Q 003871 585 ----HQNRITCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 652 (790)
Q Consensus 585 ----h~~~v~~l~~spdg~~l~s~s~d--------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l 652 (790)
.....+.+++.|+|++.++.... |.|..++.. ++.. .... +- ...+.++|+|+++.|
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~--~~~~----~~----~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT--VVAD----GL----GFPNGIAFSPDGKTL 148 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE--EEEE----EE----SSEEEEEEETTSSEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE--EEec----Cc----ccccceEECCcchhe
Confidence 34568899999999977776543 457777777 3311 1111 11 357899999999988
Q ss_pred EEE--eCCcEEEEECCCCce----eeeec-CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccC
Q 003871 653 LSI--HEGQIDVYEAPTLNH----TSQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 725 (790)
Q Consensus 653 ~~~--~dg~I~iwd~~~~~~----~~~~~-~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~ 725 (790)
+++ ..+.|..+++..... .+.+. ........-.++++.+|++.++....+.|.+++.+ |+++..+...
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---- 223 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP---- 223 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S----
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC----
Confidence 864 567799999853221 12221 11112347889999999988888889999999988 8887776532
Q ss_pred CCCcccccceEEEEEecCCCCEEEEE
Q 003871 726 PGTISLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 726 ~gh~~~~v~~~~v~~sp~d~~~las~ 751 (790)
.. .+++++|...+.+.|...
T Consensus 224 ----~~--~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 224 ----VP--RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp ----SS--SEEEEEEESTTSSEEEEE
T ss_pred ----CC--CEEEEEEECCCCCEEEEE
Confidence 11 255999953255555443
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.75 E-value=9.7e-08 Score=96.41 Aligned_cols=161 Identities=14% Similarity=0.031 Sum_probs=110.9
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE----EeCCcEEEE
Q 003871 588 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS----IHEGQIDVY 663 (790)
Q Consensus 588 ~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~----~~dg~I~iw 663 (790)
....+..+|.++++|.+..+....++++..... ..+.+...... ..-+++.|..+.....+ |....+.+|
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~-----~~~~ai~~~~~~~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP-----KRPTAISFIREDTSVLVADKAGDVYSFDIL 137 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc-----cCcceeeeeeccceEEEEeecCCceeeeee
Confidence 345566788889999988888887888776432 11222211111 23445555555544444 244556777
Q ss_pred ECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecC
Q 003871 664 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 743 (790)
Q Consensus 664 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~ 743 (790)
....+.+...+ +|-..++.++|+||+++|+++..|..|++-.......+..+.. || ..-|. .++.-+
T Consensus 138 s~~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl------GH-~eFVS--~isl~~- 204 (390)
T KOG3914|consen 138 SADSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL------GH-KEFVS--TISLTD- 204 (390)
T ss_pred cccccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc------cc-Hhhee--eeeecc-
Confidence 76655554333 4789999999999999999999999999988877665555542 76 44555 555555
Q ss_pred CCCEEEEEeCCCcEEEEecCCCccc
Q 003871 744 EPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 744 d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
+..|+++|.|++|++||+.+|++.
T Consensus 205 -~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 205 -NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred -CceeeecCCCCcEEEEecccCCcc
Confidence 567899999999999999999765
No 297
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.74 E-value=8.8e-06 Score=81.94 Aligned_cols=217 Identities=18% Similarity=0.109 Sum_probs=145.2
Q ss_pred CcEEEEec--CCeEEEEECCCCcEEEEEcCCCCCe--EEEEEcCCC-eEEEEeC-----CCcEEEEeCC-CCceEEEEcC
Q 003871 516 GSHLFSAS--GGKISIFSLETFQTLATFANPPPIA--TYFILLPQD-LFAFGFD-----DSSILVHCPC-TKKTKAKLKG 584 (790)
Q Consensus 516 ~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v--~~l~~s~~g-~l~sgs~-----dg~I~iwd~~-~~~~~~~l~~ 584 (790)
...++.+- .....+||..+++....+....+.- -.-+||+|| +|++.-+ .|.|-|||.. +-+.+..+..
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s 96 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS 96 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC
Confidence 33455555 3467799999999888776544432 246899999 7776543 4689999998 5577888888
Q ss_pred CCCCEEEEEEeCCCCEEEEEe------------------CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEe
Q 003871 585 HQNRITCLAYSLSLNVLVSSG------------------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 646 (790)
Q Consensus 585 h~~~v~~l~~spdg~~l~s~s------------------~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~s 646 (790)
|.-....+.+.|||+.|+++. .+..+...|..+|+.+....+. ...|. -+|..+++.
T Consensus 97 ~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp--~~~~~---lSiRHLa~~ 171 (305)
T PF07433_consen 97 HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP--PDLHQ---LSIRHLAVD 171 (305)
T ss_pred CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC--ccccc---cceeeEEec
Confidence 877778899999998888763 2335666777777655433331 12233 589999999
Q ss_pred CCCCEEEEE-eCC-------cEEEEECCCCceeeeecCC-----CCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCC
Q 003871 647 PDQIHLLSI-HEG-------QIDVYEAPTLNHTSQLVPD-----KMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTL 712 (790)
Q Consensus 647 p~~~~l~~~-~dg-------~I~iwd~~~~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~~~ 712 (790)
++|..++.. ..| -+.+++.. +.+..+... .-...+-++++++++.++++.+ ..+.+.+||..++
T Consensus 172 ~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 172 GDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred CCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 999877764 222 14555543 323333221 1257799999999998886554 5688999999999
Q ss_pred eEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeC
Q 003871 713 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 753 (790)
Q Consensus 713 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~ 753 (790)
+++...... .+. .++-.+ ++ +++|.+.
T Consensus 250 ~~~~~~~l~----------D~c--Gva~~~-~~-f~~ssG~ 276 (305)
T PF07433_consen 250 RLLGSVPLP----------DAC--GVAPTD-DG-FLVSSGQ 276 (305)
T ss_pred CEeeccccC----------cee--eeeecC-Cc-eEEeCCC
Confidence 988775421 233 666655 44 6666554
No 298
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.74 E-value=2.1e-08 Score=92.62 Aligned_cols=130 Identities=22% Similarity=0.238 Sum_probs=96.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHhcccc--cccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHH
Q 003871 45 NVHRFGEIVMNGEWEKAEKYLSAFT--KLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCE 122 (790)
Q Consensus 45 ~~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~ 122 (790)
+...++++|++||++.|++.++... ....+ ..+.|.|+.|+|+|||..++..+|+.+.|+.++|......+.++.
T Consensus 4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~---~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~ 80 (145)
T PF10607_consen 4 ERKKIRQAILNGDIDPAIEWLNENFPELLKRN---SSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKK 80 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcC---CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4788999999999999999998762 22222 238899999999999999999999999999998774435677888
Q ss_pred HHHHhcccccch--hhhccCCCCchhHHHHHHHHHHHhhcccccccccccCCCCc-chHHHHHHHHhc
Q 003871 123 LAELLALKDLRE--NEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVN-NSALSSLIKLIC 187 (790)
Q Consensus 123 l~~~l~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~~~~~~~p-~~rL~~L~~~~~ 187 (790)
+..+|...+..+ .......- ....|.+|++.+...+-...- +| .+.|+.++++.+
T Consensus 81 ~~~lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~ 138 (145)
T PF10607_consen 81 LMSLLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGL 138 (145)
T ss_pred HHHHHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHH
Confidence 888888776432 11111112 337799999999998777333 44 467888877643
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.72 E-value=6e-06 Score=83.55 Aligned_cols=195 Identities=17% Similarity=0.108 Sum_probs=121.0
Q ss_pred cCcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEE-cCCC---CCE
Q 003871 515 RGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL-KGHQ---NRI 589 (790)
Q Consensus 515 s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l-~~h~---~~v 589 (790)
.++.+++++ ++.|..||..+|+.+.++.... .+.......++.+++++.++.++.+|..+|+.+... .... ...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-cccceeeecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 366666665 9999999999999998887532 221112222336677778889999999999988774 3221 112
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCC--CCCCeEEEEEeCCCCEEEEEeCCcEEEEECCC
Q 003871 590 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP--ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT 667 (790)
Q Consensus 590 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~--~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~ 667 (790)
.......++..++.+..++.|..+|+++|+......+. ......+ ....+..-....++..++++.++.+.-+|+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~t 192 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLAT 192 (238)
T ss_dssp --SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTT
T ss_pred cccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCC
Confidence 22333334778888998999999999998865544442 1111000 00011222222345444445677544449999
Q ss_pred CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003871 668 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC 716 (790)
Q Consensus 668 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~ 716 (790)
++.+-... ...+.. ....++..|+.++.++.|..||+.+|+.+-
T Consensus 193 g~~~w~~~----~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 193 GEKLWSKP----ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TEEEEEEC----SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCEEEEec----CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 98653221 122222 145778888888899999999999998754
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.72 E-value=2.4e-05 Score=79.59 Aligned_cols=218 Identities=14% Similarity=0.100 Sum_probs=139.7
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEe
Q 003871 446 RLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 522 (790)
Q Consensus 446 ~l~~sp-dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~ 522 (790)
++.|.+ +|.++++-...+.|..|+..++.. .... ... ...+++. +..++.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~---------------------~~~~----~~~-~~G~~~~~~~g~l~v~ 57 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV---------------------EVID----LPG-PNGMAFDRPDGRLYVA 57 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE---------------------EEEE----SSS-EEEEEEECTTSEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE---------------------EEEe----cCC-CceEEEEccCCEEEEE
Confidence 567888 555444444588888888765332 1111 112 5566666 6666666
Q ss_pred cCCeEEEEECCCCcEEEEEcC-----CCCCeEEEEEcCCC-eEEEEeCC--------CcEEEEeCCCCceEEEEcCCCCC
Q 003871 523 SGGKISIFSLETFQTLATFAN-----PPPIATYFILLPQD-LFAFGFDD--------SSILVHCPCTKKTKAKLKGHQNR 588 (790)
Q Consensus 523 sdg~I~vwd~~~~~~~~~~~~-----~~~~v~~l~~s~~g-~l~sgs~d--------g~I~iwd~~~~~~~~~l~~h~~~ 588 (790)
..+.+.++|..+++....... .....+.+++.|+| ..++.... |.|+.++.. ++...... .-..
T Consensus 58 ~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~ 135 (246)
T PF08450_consen 58 DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGF 135 (246)
T ss_dssp ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESS
T ss_pred EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Cccc
Confidence 655566669988865444332 23457899999999 66665543 568888877 55443333 3456
Q ss_pred EEEEEEeCCCCEEE-EEeCCCcEEEEECCCCc--eeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEE
Q 003871 589 ITCLAYSLSLNVLV-SSGADAQLCVWDAVGWK--KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 664 (790)
Q Consensus 589 v~~l~~spdg~~l~-s~s~dg~I~vwd~~~~~--~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd 664 (790)
.+.++|+||++.|+ +-+..+.|..+++.... ......+..+.... +..-.+++.++|++.++. ..+.|.++|
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP----GYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS----CEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC----cCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 78999999998775 55667889999986422 22222222122221 247789999999877764 788999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEe-cCCCEEEEE
Q 003871 665 APTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVS 698 (790)
Q Consensus 665 ~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~sg 698 (790)
.. |+.+..+... ...+++++|. ++.+.|+..
T Consensus 212 p~-G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 212 PD-GKLLREIELP--VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp TT-SCEEEEEE-S--SSSEEEEEEESTTSSEEEEE
T ss_pred CC-ccEEEEEcCC--CCCEEEEEEECCCCCEEEEE
Confidence 97 8888888764 4589999995 676666544
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.71 E-value=4e-07 Score=88.48 Aligned_cols=262 Identities=13% Similarity=0.143 Sum_probs=163.2
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCce--eeeecccCCCCCCeEEEEec--
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~V~~l~~s-- 515 (790)
..+.|+++.|...|.|+++|...|.|.++.-..... -...-++ -++..... .+.. -.-...|..+.|.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~---ceykf~t--eFQshe~EFDYLkS---leieEKin~I~w~~~ 96 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG---CEYKFFT--EFQSHELEFDYLKS---LEIEEKINAIEWFDD 96 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccc---cchhhhh--hhcccccchhhhhh---ccHHHHhhheeeecC
Confidence 357899999999999999999999999987554221 0000000 00000000 0000 0124567788887
Q ss_pred ---CcEEEEecCCeEEEEECCCCc-------------------EE-----------------------EEE-cCCCCCeE
Q 003871 516 ---GSHLFSASGGKISIFSLETFQ-------------------TL-----------------------ATF-ANPPPIAT 549 (790)
Q Consensus 516 ---~~~l~s~sdg~I~vwd~~~~~-------------------~~-----------------------~~~-~~~~~~v~ 549 (790)
..+|+++.|.+|++|.+.... .+ +.+ ..|...+.
T Consensus 97 t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 567888889999999874320 00 011 24566678
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCc---eEEEEcCCC-----CCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCc
Q 003871 550 YFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQ-----NRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWK 619 (790)
Q Consensus 550 ~l~~s~~g-~l~sgs~dg~I~iwd~~~~~---~~~~l~~h~-----~~v~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~ 619 (790)
++.+..|. .++++ .|-.|.+|++.-.. .+..++.|. .-|++..|+|. .+.+...+..|.|++-|++...
T Consensus 177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 88888888 66654 57789999986432 123344443 35788899994 5567777889999999998421
Q ss_pred ee-eceeeeeec---cCCC---CCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCC-ceeeeecCCC----------CCC
Q 003871 620 KL-CSKFLHSFQ---TGLV---PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL-NHTSQLVPDK----------MDL 681 (790)
Q Consensus 620 ~~-~~~~l~~~~---~~~~---~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~-~~~~~~~~~~----------h~~ 681 (790)
.- ....+.... ..+. .....|..+.|+++|+++++-.-.+++|||++.. .++.++..+. ...
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 10 000000000 0000 0114788899999999999877788999999754 4566653211 012
Q ss_pred Ce---EEEEEecCCCEEEEEEcCCeEEEEECC
Q 003871 682 PI---TYATYSCDGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 682 ~v---~~l~~s~dg~~l~sgs~dg~i~vwd~~ 710 (790)
.| ..+.||-|.+.+.+|+..+..-+|-..
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeeeccc
Confidence 23 357888899999999988888887644
No 302
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.65 E-value=2.3e-05 Score=76.51 Aligned_cols=200 Identities=16% Similarity=0.113 Sum_probs=129.5
Q ss_pred CcEEEEecCCeEEEEECCCC--cEEEEEc---CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcC-----
Q 003871 516 GSHLFSASGGKISIFSLETF--QTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----- 584 (790)
Q Consensus 516 ~~~l~s~sdg~I~vwd~~~~--~~~~~~~---~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~----- 584 (790)
|+.||...|..|.+-..++. ..+.+.. .....-+.++||||+ .||.+...|+|+++|+.. ..+..+..
T Consensus 9 Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~ 87 (282)
T PF15492_consen 9 GKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFP 87 (282)
T ss_pred CcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccC
Confidence 67777777877777665432 2223332 223345789999999 999999999999999874 44444432
Q ss_pred --CCCCEEEEEEeCCC------CEEEEEeCCCcEEEEECCCCc---eeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEE
Q 003871 585 --HQNRITCLAYSLSL------NVLVSSGADAQLCVWDAVGWK---KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 653 (790)
Q Consensus 585 --h~~~v~~l~~spdg------~~l~s~s~dg~I~vwd~~~~~---~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~ 653 (790)
-...|.++.|-+.. ..|++-..+|.++-|-+..+. ......+. +...+. ..|.++.++|..++|+
T Consensus 88 ~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs-f~~~yp---~Gi~~~vy~p~h~LLl 163 (282)
T PF15492_consen 88 GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS-FSSHYP---HGINSAVYHPKHRLLL 163 (282)
T ss_pred CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE-ecccCC---CceeEEEEcCCCCEEE
Confidence 22467777775421 236666778888777654321 11122222 333333 6899999999998888
Q ss_pred EE--e---CC-------cEEEEECCCCceeee--------------------------ecC-CCCCCCeEEEEEecCCCE
Q 003871 654 SI--H---EG-------QIDVYEAPTLNHTSQ--------------------------LVP-DKMDLPITYATYSCDGKC 694 (790)
Q Consensus 654 ~~--~---dg-------~I~iwd~~~~~~~~~--------------------------~~~-~~h~~~v~~l~~s~dg~~ 694 (790)
+| . ++ .+.-|.+-++.+... +.. ......|..|..||||+.
T Consensus 164 VgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~ 243 (282)
T PF15492_consen 164 VGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSL 243 (282)
T ss_pred EeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCE
Confidence 74 1 11 256665543221100 000 012567899999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecc
Q 003871 695 IYVSCKSGHVKVFDTSTLELRCQINL 720 (790)
Q Consensus 695 l~sgs~dg~i~vwd~~~~~~~~~~~~ 720 (790)
||+...+|.|.+|++.+-++...+..
T Consensus 244 La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 244 LACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred EEEEEcCCeEEEEecCcchhhcccch
Confidence 99999999999999999887777653
No 303
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=9.7e-08 Score=94.17 Aligned_cols=163 Identities=12% Similarity=0.077 Sum_probs=117.9
Q ss_pred EEEcCC--CeEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeee
Q 003871 551 FILLPQ--DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628 (790)
Q Consensus 551 l~~s~~--g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~ 628 (790)
++|+-+ |+-++.+.+..|-+-|+.+|... .|. .++.|.++.|...++.+..|..+|.|..+|++.+..-...+.+.
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 366533 32255566778889999987432 343 56779999999888999999999999999999742211222222
Q ss_pred eccCCCCCCCCeEEEEEeC-CCCEEEE-EeCCcEEEEECCCCce---eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe
Q 003871 629 FQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 703 (790)
Q Consensus 629 ~~~~~~~~~~~v~~i~~sp-~~~~l~~-~~dg~I~iwd~~~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~ 703 (790)
+. |. ..|+++..-. ++.+|.+ +.+|+|++||.+.-++ +.++.++.......-+-..+....+++++.|..
T Consensus 295 ly--h~---Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcy 369 (425)
T KOG2695|consen 295 LY--HD---SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCY 369 (425)
T ss_pred EE--cC---cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeE
Confidence 22 33 5788887665 5666666 5899999999997777 888866433334444555677889999999999
Q ss_pred EEEEECCCCeEEEEecc
Q 003871 704 VKVFDTSTLELRCQINL 720 (790)
Q Consensus 704 i~vwd~~~~~~~~~~~~ 720 (790)
.+||.++.|.++.++..
T Consensus 370 tRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 370 TRIWSLDSGHLLCTIPF 386 (425)
T ss_pred EEEEecccCceeeccCC
Confidence 99999999999988753
No 304
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.60 E-value=6.9e-07 Score=90.39 Aligned_cols=149 Identities=15% Similarity=0.163 Sum_probs=101.6
Q ss_pred CcEEEEec-CCeEEEEECCCCc----EEEEEcCCCCCeEEEEEcCCC-eEEEE---eCCCcEEEEeCCCCceEEEEcCCC
Q 003871 516 GSHLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD-LFAFG---FDDSSILVHCPCTKKTKAKLKGHQ 586 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~----~~~~~~~~~~~v~~l~~s~~g-~l~sg---s~dg~I~iwd~~~~~~~~~l~~h~ 586 (790)
++++|++. +....++++.... ....+.. ...-+++.+..+. .+..+ ++...+.+|....+.+ ..+-||-
T Consensus 74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~lGhv 151 (390)
T KOG3914|consen 74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPILGHV 151 (390)
T ss_pred ceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccCc-chhhhhh
Confidence 56667666 4555566554322 2222222 2222344444444 33333 3344556666555443 3455799
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEEC
Q 003871 587 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 665 (790)
Q Consensus 587 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~ 665 (790)
..+++++|+||+++|+++..|..|++-.... ...+.++.-||. .-|..++.-++.. |++ |.|+++++||+
T Consensus 152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa-----~f~IesfclGH~---eFVS~isl~~~~~-LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPA-----TFVIESFCLGHK---EFVSTISLTDNYL-LLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhheeeecCCCCEEEEecCCceEEEEecCc-----ccchhhhccccH---hheeeeeeccCce-eeecCCCCcEEEEec
Confidence 9999999999999999999999999988776 456666777888 7999999987754 555 69999999999
Q ss_pred CCCceeeeec
Q 003871 666 PTLNHTSQLV 675 (790)
Q Consensus 666 ~~~~~~~~~~ 675 (790)
.+|+.+.++.
T Consensus 223 ~sgk~L~t~d 232 (390)
T KOG3914|consen 223 TSGKLLDTCD 232 (390)
T ss_pred ccCCcccccc
Confidence 9999887663
No 305
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.57 E-value=3.4e-05 Score=77.80 Aligned_cols=179 Identities=15% Similarity=0.142 Sum_probs=121.7
Q ss_pred EEec--CcEEEEec------CCeEEEEECC-CCcEEEEEcCCCCCeEEEEEcCCC-eEEEEe------------------
Q 003871 512 FALR--GSHLFSAS------GGKISIFSLE-TFQTLATFANPPPIATYFILLPQD-LFAFGF------------------ 563 (790)
Q Consensus 512 l~~s--~~~l~s~s------dg~I~vwd~~-~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs------------------ 563 (790)
-+|+ |++|++.- .|.|-|||.. +.+.+..+..+.-.-..+.+.||| .|+++-
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 5677 88888764 3789999998 677888888777777888999999 666542
Q ss_pred CCCcEEEEeCCCCceEEEEc----CCCCCEEEEEEeCCCCEEEEEeCCCc-------EEEEECCCCceeeceeeeeeccC
Q 003871 564 DDSSILVHCPCTKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGADAQ-------LCVWDAVGWKKLCSKFLHSFQTG 632 (790)
Q Consensus 564 ~dg~I~iwd~~~~~~~~~l~----~h~~~v~~l~~spdg~~l~s~s~dg~-------I~vwd~~~~~~~~~~~l~~~~~~ 632 (790)
.+.++...|..+|+.+.+.. .|...|..+++.++|..++..-..|. +-+++... .. ..+. .+..
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~--~~~~-~p~~ 210 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--AL--RLLP-APEE 210 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cc--eecc-CChH
Confidence 12356777888898877643 37788999999999876655443332 33333322 10 1111 1100
Q ss_pred C-CCCCCCeEEEEEeCCCCEEEE-E-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 003871 633 L-VPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 700 (790)
Q Consensus 633 ~-~~~~~~v~~i~~sp~~~~l~~-~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 700 (790)
. ....+.+-+|++++++.++++ + ..+.+.+||..+++.+.... -..+..++-.+++ ++++.+.
T Consensus 211 ~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 211 QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCCC
Confidence 0 001158999999999998887 4 78899999999999887663 3456777777666 6665543
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.9e-06 Score=88.08 Aligned_cols=290 Identities=16% Similarity=0.220 Sum_probs=186.8
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCce-eeeecccCCCCCCeEEEEec--C
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL-VMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
|.+.|+.+..+ -.+++++++-||.++.|.-... .|. .+... ..|...|.+++.+ +
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i-------------------sGvEfVKhF--raHL~~I~sl~~S~dg 65 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI-------------------SGVEFVKHF--RAHLGVILSLAVSYDG 65 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCc-------------------cceeehhhh--HHHHHHHHhhhccccc
Confidence 77878877554 4568999999999999964320 011 11111 1477778888888 5
Q ss_pred cEEEEec--CCeEEEEECCCCcEEEEEcC--CCCCeEEEEEcCCC---eEEEE-eCCCcEEEEeCCCCc-eEEEE-cCCC
Q 003871 517 SHLFSAS--GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD---LFAFG-FDDSSILVHCPCTKK-TKAKL-KGHQ 586 (790)
Q Consensus 517 ~~l~s~s--dg~I~vwd~~~~~~~~~~~~--~~~~v~~l~~s~~g---~l~sg-s~dg~I~iwd~~~~~-~~~~l-~~h~ 586 (790)
.++.+.+ |..++++|+++...+..++. ..+.+ +...++.. .++++ ..+|.+.++|-..+- ....+ .-|.
T Consensus 66 ~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~ 144 (558)
T KOG0882|consen 66 WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHF 144 (558)
T ss_pred eeEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccccc
Confidence 5666655 78999999987665543331 22222 33334443 44444 456799999976543 33333 3499
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-Ccee---------eceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E
Q 003871 587 NRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKL---------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 655 (790)
Q Consensus 587 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~-~~~~---------~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~ 655 (790)
.+|..+.++|-+..+++....|.|.-|.... .+.. ....+..++... ....++.|+|+|..+.+ +
T Consensus 145 sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K----t~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 145 SPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK----TEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred CceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccc----cCccceEEccccCcccccC
Confidence 9999999999999999999999999999873 1100 001111122222 46789999999999998 7
Q ss_pred eCCcEEEEECCCCceeeeecCC------------------------------CC-CCCeEEEEEecCCCEEEEEEcCCeE
Q 003871 656 HEGQIDVYEAPTLNHTSQLVPD------------------------------KM-DLPITYATYSCDGKCIYVSCKSGHV 704 (790)
Q Consensus 656 ~dg~I~iwd~~~~~~~~~~~~~------------------------------~h-~~~v~~l~~s~dg~~l~sgs~dg~i 704 (790)
.|..|++++..+|+.++.+... .| ...-+.+.|...|++|+-|+-=| |
T Consensus 221 ~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-i 299 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-I 299 (558)
T ss_pred cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-E
Confidence 9999999999998776553210 01 23346678888999999877544 8
Q ss_pred EEEECCCCeEEEEeccc---ccc--------CCCCccc------ccceEEEEEecCCCCEEEEEeCCCcEEEE
Q 003871 705 KVFDTSTLELRCQINLT---AYA--------QPGTISL------ELYPLVIAAHPLEPNRIALGLTNGRVHVI 760 (790)
Q Consensus 705 ~vwd~~~~~~~~~~~~~---~~~--------~~gh~~~------~v~~~~v~~sp~d~~~las~s~Dg~i~iW 760 (790)
++.++.++..+..+--. .+. ..++ .. ..++ .+.+-+ |..+++++-.-.+++++
T Consensus 300 kvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~-~~~~~~~a~~np-~~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 300 KVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSN-LAALEVAASNNP-LLEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEEEeecCeEEEEeccchhhhhhhHHHHhhhhhcc-chhhhhhhccCc-ccccCC-CCeEEEeeeecceEEEE
Confidence 89999998876655211 000 0010 00 0111 123455 67778888888888888
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=5.2e-07 Score=92.08 Aligned_cols=215 Identities=13% Similarity=0.044 Sum_probs=147.3
Q ss_pred CCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCC--C-ceEEEEcCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCc
Q 003871 544 PPPIATYFILLPQDLFAFGFDDSSILVHCPCT--K-KTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWK 619 (790)
Q Consensus 544 ~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~--~-~~~~~l~~h~~~v~~l~~spdg~~l~s~s~-dg~I~vwd~~~~~ 619 (790)
|...|+.+..+...++.+++.||.++.|--.. | +.+..+..|.+.|.+++.+.||..+.+++. |..++++|+.+-.
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 56667776655444999999999999998543 2 334556778889999999999999999887 9999999998854
Q ss_pred eeeceeeeeeccCCCCCCCCeEEEEEeCCC--CEEEEE--eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEE
Q 003871 620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI 695 (790)
Q Consensus 620 ~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~--~~l~~~--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 695 (790)
......+..++ +.+.. ..+|.. ..++++ .++.+.++|-....+-.-+...-|..+|..+.+.+-+..+
T Consensus 88 minmiKL~~lP-------g~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 88 MINMIKLVDLP-------GFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred hhhhcccccCC-------CceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 33222222111 12222 222221 245554 7899999998765533333333579999999999999999
Q ss_pred EEEEcCCeEEEEECCC------CeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccc
Q 003871 696 YVSCKSGHVKVFDTST------LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 696 ~sgs~dg~i~vwd~~~------~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
++....|.|.-|.... +++...+....++. |-....-.+.++.|+| ++..+++-+.|..|+++...+|+-.
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy-~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY-GFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhh-cccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhh
Confidence 9999999999999873 11111111111110 1111222355999999 8999999999999999999988633
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=4.8e-08 Score=106.76 Aligned_cols=256 Identities=11% Similarity=0.089 Sum_probs=170.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
+++..|+..- +|++|+ -+.++| +.|+..|.|+++++.. +....-. .+|..+|+.+
T Consensus 1095 ~~frd~~~~f-------Tc~afs-------~~~~hL----~vG~~~Geik~~nv~s----G~~e~s~---ncH~SavT~v 1149 (1516)
T KOG1832|consen 1095 RSFRDETALF-------TCIAFS-------GGTNHL----AVGSHAGEIKIFNVSS----GSMEESV---NCHQSAVTLV 1149 (1516)
T ss_pred hhhhccccce-------eeEEee-------cCCceE----EeeeccceEEEEEccC----ccccccc---cccccccccc
Confidence 6677787776 999999 778899 9999999999999974 4332211 4799999999
Q ss_pred EEcCCCCEEEEEeCCC--cEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec
Q 003871 448 IYSHSGDFLVALTQTA--THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 523 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg--~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s 523 (790)
.=+.||..+++.+.-. -..+|++.+... . . ..-..-.++.|+ ...-+.|.
T Consensus 1150 ePs~dgs~~Ltsss~S~PlsaLW~~~s~~~--------------------~-~-----Hsf~ed~~vkFsn~~q~r~~gt 1203 (1516)
T KOG1832|consen 1150 EPSVDGSTQLTSSSSSSPLSALWDASSTGG--------------------P-R-----HSFDEDKAVKFSNSLQFRALGT 1203 (1516)
T ss_pred cccCCcceeeeeccccCchHHHhccccccC--------------------c-c-----ccccccceeehhhhHHHHHhcc
Confidence 9999999888877633 345666543111 1 1 112334577888 22223333
Q ss_pred -CCeEEEEECCCCcEEEEEcC----CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCC
Q 003871 524 -GGKISIFSLETFQTLATFAN----PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 597 (790)
Q Consensus 524 -dg~I~vwd~~~~~~~~~~~~----~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd 597 (790)
.....+||+.|+..+.++-. ....-++..|+|++ +++ +|| .+||++..+.++.|...+..+. -.|+|.
T Consensus 1204 ~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~ 1277 (1516)
T KOG1832|consen 1204 EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGG-GGFHPS 1277 (1516)
T ss_pred cccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheeccc-ccccCC
Confidence 56788999999887766421 12233778899999 554 466 4799998887777765443332 359999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE---eC---------------Cc
Q 003871 598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HE---------------GQ 659 (790)
Q Consensus 598 g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~---~d---------------g~ 659 (790)
|.-++.-+ .|||+++.+ .+..++.- .-..+.|+..|..++.. .| ..
T Consensus 1278 g~eVIINS-----EIwD~RTF~-----lLh~VP~L------dqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSS 1341 (1516)
T KOG1832|consen 1278 GNEVIINS-----EIWDMRTFK-----LLHSVPSL------DQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSS 1341 (1516)
T ss_pred CceEEeec-----hhhhhHHHH-----HHhcCccc------cceEEEeccCccchhhhhhhhhhhhhhcccccccchhhh
Confidence 99888766 489999933 34433332 33568898888776642 11 12
Q ss_pred EEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 003871 660 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 699 (790)
Q Consensus 660 I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 699 (790)
.+-+|......+.++.. ...+..+|-+|...+|+.--
T Consensus 1342 FRTf~a~dYs~iaTi~v---~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1342 FRTFDAIDYSDIATIPV---DRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred hccccccccccceeeec---ccchhhhhcCCccceEEEEe
Confidence 34555555666666644 56677777777777776543
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.50 E-value=6.5e-07 Score=85.19 Aligned_cols=197 Identities=13% Similarity=0.096 Sum_probs=116.4
Q ss_pred eEEEEEcCCCeEEEEeCCCcEEEEeCCCCce------------EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 003871 548 ATYFILLPQDLFAFGFDDSSILVHCPCTKKT------------KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615 (790)
Q Consensus 548 v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~------------~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~ 615 (790)
++.+.++.+..|+++..++.+.....-++.+ .+.+..|+.+-.+-+.+--++.+++++.||.+.+++.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 4444444333566666665554444332222 2223333333222233334567999999999999998
Q ss_pred CCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE------eCCcEEEEECCCCceeeeecCC-CCCCCeEEEEE
Q 003871 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI------HEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATY 688 (790)
Q Consensus 616 ~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~------~dg~I~iwd~~~~~~~~~~~~~-~h~~~v~~l~~ 688 (790)
+. .. .....++..|. .-.+.++...+..+.++ .-+..+.|+++- ..++... .....|.+++-
T Consensus 119 ~~-~~---~~~~~i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p---~~t~~~~~~~~~~v~~l~~ 187 (319)
T KOG4714|consen 119 DK-DL---ALMSRIPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDP---IKTLIPSKKALDAVTALCS 187 (319)
T ss_pred hH-HH---hhhhhcccccc----cccccceeecccEEecCCcceEeeccceeeecccc---cccccccccccccchhhhC
Confidence 76 11 11111222222 12233334445555553 234466676653 2222221 11345899999
Q ss_pred ecCC-CEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 689 SCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 689 s~dg-~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
+|.. +.+++|+.||.+-+||.+.......+. ..| ..+++ .+-|||.++..|.++++||.+.-||..+
T Consensus 188 hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l------~ah-k~~i~--eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 188 HPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL------KAH-KAEIW--EVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CcccccEEEEecCCCeEEEEEcccccchHHHH------HHh-hhhhh--heeccCCCchheeEecCCCcEEEEcCCC
Confidence 9854 577789999999999999874322211 123 66788 9999999999999999999999999874
No 310
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.50 E-value=1.3e-06 Score=83.09 Aligned_cols=192 Identities=17% Similarity=0.202 Sum_probs=111.8
Q ss_pred eEEEEec-CcEEEEec-CCeEEEEECCCCcE------------EEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeC
Q 003871 509 ISCFALR-GSHLFSAS-GGKISIFSLETFQT------------LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP 573 (790)
Q Consensus 509 V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~~------------~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~ 573 (790)
++.+.++ ...|+++. ++.+......++.+ .+.+..+.++-.+-+.+-.+ .++++..||.+.+++.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 5666666 44555554 55555444433322 22232233322222333345 8999999999999987
Q ss_pred CCCc-eEEEEcC-CCCCEEEEEEeCCCCEEEEEe-----CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEe
Q 003871 574 CTKK-TKAKLKG-HQNRITCLAYSLSLNVLVSSG-----ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 646 (790)
Q Consensus 574 ~~~~-~~~~l~~-h~~~v~~l~~spdg~~l~s~s-----~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~s 646 (790)
+.-. ...++.. |.+ -.+..+...++.+.++. .-+..+.|+++..+ ++...+.. ...|++++-+
T Consensus 119 ~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~--------t~~~~~~~-~~~v~~l~~h 188 (319)
T KOG4714|consen 119 DKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK--------TLIPSKKA-LDAVTALCSH 188 (319)
T ss_pred hHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccc--------cccccccc-cccchhhhCC
Confidence 6421 1111111 211 11222333444444432 12345566665411 11111110 0358999999
Q ss_pred CCCCEEEE-E-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCC
Q 003871 647 PDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 647 p~~~~l~~-~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~dg~i~vwd~~~ 711 (790)
|....+++ | .||.+.+||.+.......+.. .|..+++.+-|+| ++..|+++++||.+.-||..+
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~-ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK-AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccEEEEecCCCeEEEEEcccccchHHHHH-HhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 98766665 5 789999999998754444332 4789999999998 567899999999999999875
No 311
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.50 E-value=0.00012 Score=74.75 Aligned_cols=271 Identities=19% Similarity=0.226 Sum_probs=160.2
Q ss_pred CceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC----------CCcEEEEecCCCCccccccccc
Q 003871 414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATHKLWKWQSNKQSLEEENVN 483 (790)
Q Consensus 414 ~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~----------dg~i~vw~~~~~~~~~g~~~~~ 483 (790)
+.+.+.|.+. ++..-.. ..+-.-.+..||||+.+++++. .-.|.+||..+-.. .+..
T Consensus 17 ~rv~viD~d~----~k~lGmi-----~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~-~~EI--- 83 (342)
T PF06433_consen 17 SRVYVIDADS----GKLLGMI-----DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP-TGEI--- 83 (342)
T ss_dssp EEEEEEETTT----TEEEEEE-----EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE-EEEE---
T ss_pred ceEEEEECCC----CcEEEEe-----ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc-cceE---
Confidence 4788888863 4433211 1334455778999999887543 34688888776433 0000
Q ss_pred cccccccCCCc-eeeeecccCCCCCCeEEEEec--CcEEEEec---CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC
Q 003871 484 MESQLYQPSSK-LVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQD 557 (790)
Q Consensus 484 ~~~~i~~~~~~-~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s---dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g 557 (790)
.+..+ +.. .......++++ |++++... ...|.|.|+..++.+..+..+. + .-.-|.+
T Consensus 84 ------~iP~k~R~~-------~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C--~~iyP~~ 146 (342)
T PF06433_consen 84 ------EIPPKPRAQ-------VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--C--WLIYPSG 146 (342)
T ss_dssp ------EETTS-B---------BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--E--EEEEEEE
T ss_pred ------ecCCcchhe-------ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--E--EEEEecC
Confidence 00000 000 00112234555 77766655 4789999999999888876432 2 2222333
Q ss_pred --eEEEEeCCCcEEEEeCC-CCceEEE----EcCCCCCE-EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeee
Q 003871 558 --LFAFGFDDSSILVHCPC-TKKTKAK----LKGHQNRI-TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 629 (790)
Q Consensus 558 --~l~sgs~dg~I~iwd~~-~~~~~~~----l~~h~~~v-~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~ 629 (790)
.+.+-+.||++.-..+. .|+...+ |.....++ ..-++...+..++.-+.+|.|+--|+.........+..-.
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccccc
Confidence 67777889988888876 4555422 11112222 2345555666777788999999999887543333333211
Q ss_pred c-----cCCCCCCCCeEEEEEeCCCCEEEE----EeCC-------cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCC
Q 003871 630 Q-----TGLVPETTIVNHIQFHPDQIHLLS----IHEG-------QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK 693 (790)
Q Consensus 630 ~-----~~~~~~~~~v~~i~~sp~~~~l~~----~~dg-------~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 693 (790)
. .+-.| +.-.-+++++....|++ +.++ .|.++|+.+++.+..+.. ..++.+++++.|.+
T Consensus 227 t~~e~~~~WrP--GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~ 301 (342)
T PF06433_consen 227 TDAEKADGWRP--GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDK 301 (342)
T ss_dssp -HHHHHTTEEE---SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS
T ss_pred CccccccCcCC--cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCC
Confidence 1 11112 45556899987766665 2232 399999999999999864 45688999998876
Q ss_pred -EEEEEE-cCCeEEEEECCCCeEEEEec
Q 003871 694 -CIYVSC-KSGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 694 -~l~sgs-~dg~i~vwd~~~~~~~~~~~ 719 (790)
+|++.+ .++.+.+||..+|+++..+.
T Consensus 302 P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 302 PLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp -EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred cEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 555544 57999999999999988876
No 312
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.48 E-value=1.8e-06 Score=83.99 Aligned_cols=262 Identities=15% Similarity=0.163 Sum_probs=158.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCce-eeeeccCCCC------------CCceEEEEEc
Q 003871 384 NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSF------------GGRVVRLIYS 450 (790)
Q Consensus 384 i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~-~~~~l~~~~h------------~~~V~~l~~s 450 (790)
|+++.|. ..|.++ +||...|.|.+|.-... .-| .++.-.-++| ...|..+.|-
T Consensus 29 ItaVefd-------~tg~Yl----atGDkgGRVvlfer~~s---~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~ 94 (460)
T COG5170 29 ITAVEFD-------ETGLYL----ATGDKGGRVVLFEREKS---YGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF 94 (460)
T ss_pred eeEEEec-------cccceE----eecCCCceEEEeecccc---cccchhhhhhhcccccchhhhhhccHHHHhhheeee
Confidence 3899997 779999 99999999999987632 111 1110000223 2457788887
Q ss_pred CCCC--EEEEEeCCCcEEEEecCCCCc--------------ccccccccc----ccccccCCCceee--eecccCCCCCC
Q 003871 451 HSGD--FLVALTQTATHKLWKWQSNKQ--------------SLEEENVNM----ESQLYQPSSKLVM--TNDIAADPKDS 508 (790)
Q Consensus 451 pdg~--~l~s~~~dg~i~vw~~~~~~~--------------~~g~~~~~~----~~~i~~~~~~~~~--~~~~~~~~~~~ 508 (790)
.++. .++..+.|.+|++|.+..... +.|....+. .|++-+...-... .......|.-.
T Consensus 95 ~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh 174 (460)
T COG5170 95 DDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH 174 (460)
T ss_pred cCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence 6543 567777899999999865432 111111000 1111000000000 00112358888
Q ss_pred eEEEEec--CcEEEEecCCeEEEEECCCCc-E--EEEEcCCC-----CCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC
Q 003871 509 ISCFALR--GSHLFSASGGKISIFSLETFQ-T--LATFANPP-----PIATYFILLPQD--LFAFGFDDSSILVHCPCTK 576 (790)
Q Consensus 509 V~~l~~s--~~~l~s~sdg~I~vwd~~~~~-~--~~~~~~~~-----~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~ 576 (790)
|.++.|+ .+.++++.|=.|.+|+++-.. + +.-+++|. .-|++..|+|.. .+.-.+..|.|++-|++..
T Consensus 175 iNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 175 INSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred eeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence 9999999 667888888999999986422 1 22223332 347888999988 6667778899999999843
Q ss_pred ceE----E------------EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCC-----
Q 003871 577 KTK----A------------KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP----- 635 (790)
Q Consensus 577 ~~~----~------------~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~----- 635 (790)
... + -+.+-...|..+.|+++|+++++-+. -+|++||++..+ .++.+++-...-
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k----~pikTi~~h~~l~~~l~ 329 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK----NPIKTIPMHCDLMDELN 329 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc----CCceeechHHHHHHHHH
Confidence 210 0 11222356889999999999987664 589999998743 344433211000
Q ss_pred ---CCCCe---EEEEEeCCCCEEEEE-eCCcEEEEE
Q 003871 636 ---ETTIV---NHIQFHPDQIHLLSI-HEGQIDVYE 664 (790)
Q Consensus 636 ---~~~~v---~~i~~sp~~~~l~~~-~dg~I~iwd 664 (790)
....| ..+.||.|.+.+.+| ..+..-+|-
T Consensus 330 d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 330 DVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred hhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 00233 247888888888775 555555554
No 313
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=1.2e-07 Score=103.86 Aligned_cols=194 Identities=14% Similarity=0.184 Sum_probs=137.9
Q ss_pred CCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCC-cEEEEeCCC-C
Q 003871 504 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS-SILVHCPCT-K 576 (790)
Q Consensus 504 ~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg-~I~iwd~~~-~ 576 (790)
.|+...+|++|+ .+.|+.|+ .|.|+++++.+|.....+.+|..+|+-+.-+.+| .+.+++... -..+|++.+ +
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 477889999999 77899999 8999999999999999999999999999999999 444444444 567899864 3
Q ss_pred ceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEe
Q 003871 577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH 656 (790)
Q Consensus 577 ~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~ 656 (790)
...+.|.+ -.++.|+.....-+.|.......+||++++. ++.+...+-......-++..|+|+..+++-
T Consensus 1179 ~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~-----~l~tylt~~~~~~y~~n~a~FsP~D~LIln-- 1247 (1516)
T KOG1832|consen 1179 GPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCS-----PLQTYLTDTVTSSYSNNLAHFSPCDTLILN-- 1247 (1516)
T ss_pred Cccccccc----cceeehhhhHHHHHhcccccceEEEecccCc-----HHHHhcCcchhhhhhccccccCCCcceEee--
Confidence 44555543 3567887754444555555678899999954 333222211100123467889999887763
Q ss_pred CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 003871 657 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 657 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~ 718 (790)
|| .+||++..+.++.|-. -..-..-.|+|.|.-++..++ |||+++-++++..
T Consensus 1248 dG--vLWDvR~~~aIh~FD~---ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFDQ---FTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSV 1299 (1516)
T ss_pred Cc--eeeeeccHHHHhhhhh---heecccccccCCCceEEeech-----hhhhHHHHHHhcC
Confidence 44 5899998877776631 122233469999999988775 9999998776553
No 314
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.45 E-value=0.00014 Score=81.65 Aligned_cols=289 Identities=13% Similarity=0.090 Sum_probs=164.5
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCe--EEEEecC-cEEEEec-CCeEE
Q 003871 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI--SCFALRG-SHLFSAS-GGKIS 528 (790)
Q Consensus 453 g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V--~~l~~s~-~~l~s~s-dg~I~ 528 (790)
+..++.++.++.+.-.|..+++. +|....+.... .....+ ..++..+ ..++.++ ++.|.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~------------~W~~~~~~~~~-----~~~~~~~~~g~~~~~~~~V~v~~~~g~v~ 123 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKV------------LWRYDPKLPAD-----RGCCDVVNRGVAYWDPRKVFFGTFDGRLV 123 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChh------------hceeCCCCCcc-----ccccccccCCcEEccCCeEEEecCCCeEE
Confidence 34577777889999888887665 56543321100 000011 1123334 6777777 89999
Q ss_pred EEECCCCcEEEEEcCCCCC-----e-EEEEEcCCCeEEEEe---------CCCcEEEEeCCCCceEEEEcCCCC------
Q 003871 529 IFSLETFQTLATFANPPPI-----A-TYFILLPQDLFAFGF---------DDSSILVHCPCTKKTKAKLKGHQN------ 587 (790)
Q Consensus 529 vwd~~~~~~~~~~~~~~~~-----v-~~l~~s~~g~l~sgs---------~dg~I~iwd~~~~~~~~~l~~h~~------ 587 (790)
.+|.++|+.+.++...... + .+..+. ++.++.++ .+|.++.+|..+|+.+..+.....
T Consensus 124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~ 202 (488)
T cd00216 124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFP 202 (488)
T ss_pred EEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCC
Confidence 9999999999888643321 1 112222 24455554 367899999999998776643211
Q ss_pred --------------CE-EEEEEeCCCCEEEEEeCCC------------------cEEEEECCCCceeeceeeeeec----
Q 003871 588 --------------RI-TCLAYSLSLNVLVSSGADA------------------QLCVWDAVGWKKLCSKFLHSFQ---- 630 (790)
Q Consensus 588 --------------~v-~~l~~spdg~~l~s~s~dg------------------~I~vwd~~~~~~~~~~~l~~~~---- 630 (790)
.+ ...++.+.+..++.++.++ .|.-+|..+|+...........
T Consensus 203 ~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~ 282 (488)
T cd00216 203 TWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY 282 (488)
T ss_pred CCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc
Confidence 01 1244555566777777665 7999999998866543221000
Q ss_pred cCCCCCCCCeEEEEEeCCCC---EEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE--------
Q 003871 631 TGLVPETTIVNHIQFHPDQI---HLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-------- 698 (790)
Q Consensus 631 ~~~~~~~~~v~~i~~sp~~~---~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg-------- 698 (790)
....+ ..+..+. .-++. .++++ .+|.++.+|.++|+.+-..... ...++.+| ..++.+
T Consensus 283 ~~~s~--p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 283 DGPNQ--PSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred ccCCC--CeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ceEEEccccccccC
Confidence 01100 0011111 01332 34444 7899999999999987654321 11223333 233322
Q ss_pred ----------EcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccc
Q 003871 699 ----------CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 699 ----------s~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
..+|.+.-.|+.+|+.+-..........-..+.....-.++. .+..++.++.||.|+.+|..+|+..
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEECCCCcee
Confidence 246889999999998876654320000000000111001111 4578888899999999999999999
Q ss_pred cccC
Q 003871 769 WGKL 772 (790)
Q Consensus 769 w~~~ 772 (790)
|...
T Consensus 430 W~~~ 433 (488)
T cd00216 430 WKFR 433 (488)
T ss_pred eEEE
Confidence 9853
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.45 E-value=1.3e-05 Score=88.12 Aligned_cols=187 Identities=10% Similarity=0.013 Sum_probs=115.0
Q ss_pred CcEEEEec--CCeEEEEECCCCcEEEEEcCC-CCCeEE-------------------EEEcCCC-eEE-EEeCCCcEEEE
Q 003871 516 GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIATY-------------------FILLPQD-LFA-FGFDDSSILVH 571 (790)
Q Consensus 516 ~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~-~~~v~~-------------------l~~s~~g-~l~-sgs~dg~I~iw 571 (790)
|++++.-. ...|-..+++..++-+.+.-+ ...+.. +=++||| .+. ..-..+.+.+.
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvI 220 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAV 220 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEE
Confidence 66777766 456666666655554433211 111111 2234555 332 22334567777
Q ss_pred eCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeC----------------------------------------CCcEE
Q 003871 572 CPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA----------------------------------------DAQLC 611 (790)
Q Consensus 572 d~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~----------------------------------------dg~I~ 611 (790)
|..+.+....+.-- +....++++|||+++++.+. ++.|.
T Consensus 221 D~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~ 299 (635)
T PRK02888 221 DAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVP 299 (635)
T ss_pred ECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEE
Confidence 87776665555422 23456778888888776651 23466
Q ss_pred EEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEECCCCce------------eeeecCC
Q 003871 612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH------------TSQLVPD 677 (790)
Q Consensus 612 vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~~~~~------------~~~~~~~ 677 (790)
+.|..+........+..++.+ .....+.++|||++++++ .+++|.|+|+.+.+. +.+...
T Consensus 300 VID~~t~~~~~~~v~~yIPVG-----KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 300 VVDGRKAANAGSALTRYVPVP-----KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred EEECCccccCCcceEEEEECC-----CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 666655100001223334444 356789999999999984 689999999987552 333322
Q ss_pred CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 678 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 678 ~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
.......+|+++|+...+-.-|..|..|++.+
T Consensus 374 --GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 --GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred --CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 45567889999999888888999999999886
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=1.9e-05 Score=87.37 Aligned_cols=203 Identities=14% Similarity=0.132 Sum_probs=129.0
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCC-EEEEEEeCCCCEEEEEeCCCc-----EEEEECCCCceee-c
Q 003871 552 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVLVSSGADAQ-----LCVWDAVGWKKLC-S 623 (790)
Q Consensus 552 ~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~-v~~l~~spdg~~l~s~s~dg~-----I~vwd~~~~~~~~-~ 623 (790)
+|++.+ .++.|+.+|.|.+++- +-+.++.++.+... |..+....+.++|++.+.|+. +++||++.-+... .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 356777 9999999999999884 34555777777666 444433334468888777654 8999997632111 1
Q ss_pred eee---e--eeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCC--ceeeeecCCCCCCCeEEEEEecCCCEE
Q 003871 624 KFL---H--SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKCI 695 (790)
Q Consensus 624 ~~l---~--~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l 695 (790)
..+ . +.+.+. ...++.+++.+.+-+.+|+| .+|.|..+.-.-. +-.+.-..+....+|+.+++..+++.+
T Consensus 109 ~c~~~~ri~~~~np~--~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPT--NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred ceeeeeeeeccCCCC--CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 122 1 111221 12688999999998889998 8899888852211 111111112237899999999999875
Q ss_pred EEEEcCCeEEEEECCCCeE-EEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCcccc
Q 003871 696 YVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 769 (790)
Q Consensus 696 ~sgs~dg~i~vwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w 769 (790)
+-...-..|.+|.+....+ .+.+. +++..++ |.++++..+ .+++|+. ..+.+|+....++.|
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld--------~~G~~ln--Css~~~~t~-qfIca~~-e~l~fY~sd~~~~cf 249 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLD--------NNGISLN--CSSFSDGTY-QFICAGS-EFLYFYDSDGRGPCF 249 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeec--------cCCccce--eeecCCCCc-cEEEecC-ceEEEEcCCCcceee
Confidence 5444567899999884432 22232 3455666 899998433 3555543 468888887655444
No 317
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.42 E-value=1.9e-07 Score=70.79 Aligned_cols=54 Identities=30% Similarity=0.529 Sum_probs=44.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChH
Q 003871 45 NVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERT 99 (790)
Q Consensus 45 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~ 99 (790)
++..++++|+.|+|++|++.++..........+. +.|.|++|+|+|||+.++..
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~-l~f~L~~q~~lell~~~~~~ 57 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSK-LEFELRKQKFLELVRQGKLE 57 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCC-chhHHHHHHHHHHHHcCCcC
Confidence 4789999999999999999998884433333333 99999999999999988653
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.42 E-value=5.1e-06 Score=92.05 Aligned_cols=179 Identities=18% Similarity=0.221 Sum_probs=130.3
Q ss_pred CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEE
Q 003871 516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 593 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~ 593 (790)
+..++-|+ ...+..+|+.+.+..+...-..+.|.-+. .++ .+.+|...|+|.+-|.++.+.++++..|++.|.++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 44555666 67788899998877776654454555554 356 899999999999999999999999999999998876
Q ss_pred EeCCCCEEEEEeC---------CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC--CCEEEEEeCCcEEE
Q 003871 594 YSLSLNVLVSSGA---------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDV 662 (790)
Q Consensus 594 ~spdg~~l~s~s~---------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~--~~~l~~~~dg~I~i 662 (790)
. .|+.|++||. |..|+|||++..+.+ .+++ ++. ...-+.|+|. .+..+++..|...+
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--~PI~-~~~-------~P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--SPIQ-FPY-------GPQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhcc--CCcc-ccc-------CchhhhhcccccceEEEEecccceee
Confidence 6 5889999875 566899999984432 2333 222 2345778885 33444478899999
Q ss_pred EECCC-Cce-eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 663 YEAPT-LNH-TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 663 wd~~~-~~~-~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
-|..+ +.+ ...+........+..+++|++|+.|+.|..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 99332 122 22222222355699999999999999999999999997
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.41 E-value=9.2e-07 Score=60.80 Aligned_cols=39 Identities=33% Similarity=0.579 Sum_probs=36.8
Q ss_pred CceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 003871 576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 614 (790)
Q Consensus 576 ~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd 614 (790)
|+++..+.+|.+.|++++|+|+++++++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=1.3e-05 Score=88.14 Aligned_cols=190 Identities=18% Similarity=0.229 Sum_probs=128.5
Q ss_pred CCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeecee
Q 003871 546 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 625 (790)
Q Consensus 546 ~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~ 625 (790)
..++|++++.. .++-|+.+|.|++++.. |.+ .....|+.. ..+|.++++|+.||+|.|-.+-+.+......
T Consensus 40 D~is~~av~~~-~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 40 DAISCCAVHDK-FFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred hHHHHHHhhcc-eeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence 34566666522 89999999999999976 444 333335443 5689999999999999999888865433333
Q ss_pred eeeeccCCCCCCCCeEEEEEeCC-----CCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 003871 626 LHSFQTGLVPETTIVNHIQFHPD-----QIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 700 (790)
Q Consensus 626 l~~~~~~~~~~~~~v~~i~~sp~-----~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 700 (790)
++ .++.+++++|+ ++.+++|....+.++.-+=.............++|.++.|. |+++|-++.
T Consensus 111 f~----------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 111 FK----------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred cC----------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecC
Confidence 33 48999999998 56677753333777764311111111222347899999997 778887765
Q ss_pred CCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 701 SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 701 dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
+| |+|||+.+++.+..+.+..-. ......+-.+.|.+ + ..|+.| ...+|+|..+..
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~~~----~R~e~fpphl~W~~-~-~~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPSQS----VRPELFPPHLHWQD-E-DRLVIG-WGDSVKICSIKK 234 (846)
T ss_pred CC-cEEEeccccceeeccCCCCCC----CCcccCCCceEecC-C-CeEEEe-cCCeEEEEEEec
Confidence 55 899999999988877654321 12334455888988 3 456655 444788888873
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=2.2e-05 Score=86.37 Aligned_cols=185 Identities=15% Similarity=0.205 Sum_probs=130.4
Q ss_pred CCCCeEEEEecCcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEE
Q 003871 505 PKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 582 (790)
Q Consensus 505 ~~~~V~~l~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l 582 (790)
....++|+++++++++.|. +|.|++++.. +.. .+...|... ..+| ++++|+.||+|.|-.+.+++...++
T Consensus 38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hhhHHHHHHhhcceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 3466778888899999999 8999999986 333 333333332 5678 9999999999999999888776665
Q ss_pred cCCCCCEEEEEEeCC-----CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeC
Q 003871 583 KGHQNRITCLAYSLS-----LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE 657 (790)
Q Consensus 583 ~~h~~~v~~l~~spd-----g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~d 657 (790)
. ...++.+++++|| .+.+++|+.-| +.++.-+--.. ...+. ...+ . ++|.++.|. |.++|-..|
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn--k~~v~-l~~~-e---G~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN--KDSVV-LSEG-E---GPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC--cccee-eecC-c---cceEEEEec--CcEEEEecC
Confidence 5 3468999999998 56799999888 76665332110 01111 1122 2 799999997 668888888
Q ss_pred CcEEEEECCCCceeeeecCCCC----CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 003871 658 GQIDVYEAPTLNHTSQLVPDKM----DLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 658 g~I~iwd~~~~~~~~~~~~~~h----~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~ 710 (790)
-.|++||+.+++.+..+..+.. ......+.|.++.+.++ |...+|+|..++
T Consensus 179 ~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 179 DGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIK 233 (846)
T ss_pred CCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEe
Confidence 8899999999888777655321 22345678877665444 344578887777
No 322
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.31 E-value=1.9e-06 Score=85.21 Aligned_cols=149 Identities=9% Similarity=0.108 Sum_probs=110.3
Q ss_pred eeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccc
Q 003871 408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQ 487 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~ 487 (790)
++.+.+..|-+-|+. ++.-+.+. ..+.|.++.|...++.+..|..+|.|...|+.....
T Consensus 228 fs~G~sqqv~L~nve----tg~~qsf~-----sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq------------ 286 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVE----TGHQQSFQ-----SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ------------ 286 (425)
T ss_pred ecccccceeEEEEee----cccccccc-----cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc------------
Confidence 455566778888886 34444322 467899999999999999999999999999986432
Q ss_pred cccCCCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCcE---EEEEcCCCCCeEEEE--EcCCC-
Q 003871 488 LYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT---LATFANPPPIATYFI--LLPQD- 557 (790)
Q Consensus 488 i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~---~~~~~~~~~~v~~l~--~s~~g- 557 (790)
-.+...+.. -|++.|+++..- +.+|++.+ +|+|++||.+--++ +.++.+|...-.-+- +.+..
T Consensus 287 ----G~~~~a~rl---yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg 359 (425)
T KOG2695|consen 287 ----GNGWCAQRL---YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG 359 (425)
T ss_pred ----CCCcceEEE---EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc
Confidence 111122222 388899887765 67777777 99999999987666 888888866443333 34444
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEEEcC
Q 003871 558 LFAFGFDDSSILVHCPCTKKTKAKLKG 584 (790)
Q Consensus 558 ~l~sgs~dg~I~iwd~~~~~~~~~l~~ 584 (790)
.++++++|-..+||.++.|..+.+++.
T Consensus 360 ~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 360 SIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eEEEccCeeEEEEEecccCceeeccCC
Confidence 888899999999999999998877753
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.31 E-value=0.00085 Score=64.52 Aligned_cols=140 Identities=13% Similarity=0.045 Sum_probs=92.0
Q ss_pred CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEec-CCeEEEEE
Q 003871 454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFS 531 (790)
Q Consensus 454 ~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd 531 (790)
.+++.|+-.+.+.--|.+++.. +|... -...|.+-+.- |++++.|. .|.+.+.+
T Consensus 24 T~v~igSHs~~~~avd~~sG~~------------~We~i------------lg~RiE~sa~vvgdfVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNL------------IWEAI------------LGVRIECSAIVVGDFVVLGCYSGGLYFLC 79 (354)
T ss_pred eEEEEecCCceEEEecCCCCcE------------Eeehh------------hCceeeeeeEEECCEEEEEEccCcEEEEE
Confidence 4555666677776666555443 33321 23445555555 88899998 89999999
Q ss_pred CCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcE
Q 003871 532 LETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 610 (790)
Q Consensus 532 ~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I 610 (790)
..+|.....+.....--......+++ .+..|+.|++.+..|.++..++.+.+-..+...+-+..|-...|..+...|.+
T Consensus 80 ~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 80 VKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred ecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 99998888776433211334557788 99999999999999999998888776444444455666633344445555655
Q ss_pred EEEECCC
Q 003871 611 CVWDAVG 617 (790)
Q Consensus 611 ~vwd~~~ 617 (790)
.--..++
T Consensus 160 lavt~~~ 166 (354)
T KOG4649|consen 160 LAVTKNP 166 (354)
T ss_pred EEEccCC
Confidence 4444444
No 324
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.00018 Score=73.19 Aligned_cols=240 Identities=20% Similarity=0.096 Sum_probs=143.1
Q ss_pred CCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc
Q 003871 504 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK 577 (790)
Q Consensus 504 ~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~ 577 (790)
++...|..++|+ ..++..++ +..|++.|+++..++..+..+ ..+++++|.-|. .+..|...|.|.+||++..+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 678889999999 34678888 999999999999999888877 778999999988 89999999999999998653
Q ss_pred e-EEEEcC--CCCCEEEEEE------eCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC
Q 003871 578 T-KAKLKG--HQNRITCLAY------SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 648 (790)
Q Consensus 578 ~-~~~l~~--h~~~v~~l~~------spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~ 648 (790)
- +..+.+ ...+|..++. .+.|.+++..+.+ ...|++..........+. .+.. +...++..++.
T Consensus 270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vle---le~p---G~cismqy~~~ 341 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLE---LEPP---GICISMQYHGV 341 (463)
T ss_pred chHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccc---cCCC---cceeeeeecCc
Confidence 2 222221 2234444332 2234445544432 455665432111111111 1111 56677777776
Q ss_pred CCEEEEE--eCC---c---EE-EEECCCCceeeeecC----CCCCCC-eE-EEEEecCCCEEE-EEEcCCeEEEEECCCC
Q 003871 649 QIHLLSI--HEG---Q---ID-VYEAPTLNHTSQLVP----DKMDLP-IT-YATYSCDGKCIY-VSCKSGHVKVFDTSTL 712 (790)
Q Consensus 649 ~~~l~~~--~dg---~---I~-iwd~~~~~~~~~~~~----~~h~~~-v~-~l~~s~dg~~l~-sgs~dg~i~vwd~~~~ 712 (790)
++.++.+ .+. + |- --|-.+|.++-.... .....- -+ .+.-.++.++++ +|+.-+.+.+||..++
T Consensus 342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 6666653 211 1 11 122233433322111 000000 01 111234556665 4555688999999999
Q ss_pred eEEEEeccccccCCCCcccccceEEEEEecCCC-CEEEEEeCCCcEEEEecCC
Q 003871 713 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEP-NRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 713 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~-~~las~s~Dg~i~iW~~~~ 764 (790)
+.++.+.. +.+|. +++....++ .+|++- .|..++|+..++
T Consensus 422 evvQ~l~~---------~epv~--Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 422 EVVQTLAL---------SEPVL--DICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred heeeeccc---------Cccee--ecceeecCCcchhhhe-ecceEEEEecCC
Confidence 99998863 34555 666655444 466655 566899987654
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.24 E-value=0.00014 Score=83.76 Aligned_cols=239 Identities=12% Similarity=0.097 Sum_probs=135.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
.++.|. -|+..+ ..+..+|.|.+-|..+ ....... .-.+.|.+++||||+..++..+..++
T Consensus 72 ~s~~fl-------~d~~~i----~v~~~~G~iilvd~et----~~~eivg----~vd~GI~aaswS~Dee~l~liT~~~t 132 (1265)
T KOG1920|consen 72 VSVQFL-------ADTNSI----CVITALGDIILVDPET----LELEIVG----NVDNGISAASWSPDEELLALITGRQT 132 (1265)
T ss_pred EEEEEe-------cccceE----EEEecCCcEEEEcccc----cceeeee----eccCceEEEeecCCCcEEEEEeCCcE
Confidence 677887 667777 8888889999888763 2222111 13678999999999999999998888
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEecCCeEEEEECCCCcE-EEEEc
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQT-LATFA 542 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~sdg~I~vwd~~~~~~-~~~~~ 542 (790)
+.+-+-. |++-.-+.+. ......+....+-|- ...=+-|+.|.....+...... .....
T Consensus 133 ll~mT~~-----------------f~~i~E~~L~--~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~ 193 (1265)
T KOG1920|consen 133 LLFMTKD-----------------FEPIAEKPLD--ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIE 193 (1265)
T ss_pred EEEEecc-----------------ccchhccccc--cccccccccceecccccceeeecchhhhcccccccccccccchh
Confidence 7764321 1110000000 000011222233333 2222333322222222111110 00011
Q ss_pred CCCCCeEEEEEcCCC-eEEEE-----eCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCCcEEEE
Q 003871 543 NPPPIATYFILLPQD-LFAFG-----FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG---ADAQLCVW 613 (790)
Q Consensus 543 ~~~~~v~~l~~s~~g-~l~sg-----s~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s---~dg~I~vw 613 (790)
....=+++.|-.|| ++|+. ...+.|++||.+ |..-..-....+.=.+++|-|.|..+++-. .|+.|.+|
T Consensus 194 -~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~Ivff 271 (1265)
T KOG1920|consen 194 -QDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFF 271 (1265)
T ss_pred -hccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEE
Confidence 12223578999999 88772 333799999977 543222222233345799999999998753 35679999
Q ss_pred ECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE---EeCC-cEEEEECCCCc
Q 003871 614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS---IHEG-QIDVYEAPTLN 669 (790)
Q Consensus 614 d~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~---~~dg-~I~iwd~~~~~ 669 (790)
.-++-+ .....+. .+... ..+..++|+.++..||+ ...+ .|++|-+.+..
T Consensus 272 ErNGL~-hg~f~l~-~p~de----~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 272 ERNGLR-HGEFVLP-FPLDE----KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ecCCcc-ccccccC-Ccccc----cchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 876521 1122222 22222 34899999999999998 3334 49999887643
No 326
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.23 E-value=0.0014 Score=73.70 Aligned_cols=236 Identities=14% Similarity=0.133 Sum_probs=137.2
Q ss_pred CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCe-EEEEecCcEEEEec---------
Q 003871 454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALRGSHLFSAS--------- 523 (790)
Q Consensus 454 ~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V-~~l~~s~~~l~s~s--------- 523 (790)
..++.++.++.+.-+|..+++. +|......... ....+ .+..+.+..++.++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~------------~W~~~~~~~~~------~~~~i~ssP~v~~~~v~vg~~~~~~~~~~ 172 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQ------------VWKFGNNDQVP------PGYTMTGAPTIVKKLVIIGSSGAEFFACG 172 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCE------------eeeecCCCCcC------cceEecCCCEEECCEEEEeccccccccCC
Confidence 5688888899999999887665 45433221100 00000 11122233344332
Q ss_pred -CCeEEEEECCCCcEEEEEcCCCC--------------------Ce-EEEEEcCCC-eEEEEeCCC--------------
Q 003871 524 -GGKISIFSLETFQTLATFANPPP--------------------IA-TYFILLPQD-LFAFGFDDS-------------- 566 (790)
Q Consensus 524 -dg~I~vwd~~~~~~~~~~~~~~~--------------------~v-~~l~~s~~g-~l~sgs~dg-------------- 566 (790)
+|.+..+|..+|+.+.++..... .+ ...++.+.+ .++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 57899999999998887753211 01 124455555 777777665
Q ss_pred ----cEEEEeCCCCceEEEEcC--CCC----CEEEEEEe----CCCC---EEEEEeCCCcEEEEECCCCceeeceeeeee
Q 003871 567 ----SILVHCPCTKKTKAKLKG--HQN----RITCLAYS----LSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHSF 629 (790)
Q Consensus 567 ----~I~iwd~~~~~~~~~l~~--h~~----~v~~l~~s----pdg~---~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~ 629 (790)
.|.-+|..+|+....++. |.. ......+. -+|. .++.++.+|.+...|.++|+.+......
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-- 330 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-- 330 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--
Confidence 799999999998876642 211 00111111 1343 5778889999999999998866543332
Q ss_pred ccCCCCCCCCeEEEEEeCCCCEEEE------------------EeCCcEEEEECCCCceeeeecCCCCC------CCeEE
Q 003871 630 QTGLVPETTIVNHIQFHPDQIHLLS------------------IHEGQIDVYEAPTLNHTSQLVPDKMD------LPITY 685 (790)
Q Consensus 630 ~~~~~~~~~~v~~i~~sp~~~~l~~------------------~~dg~I~iwd~~~~~~~~~~~~~~h~------~~v~~ 685 (790)
...++.+| +...+. ..+|.+.-.|+.+|+.+=+.....+. .+...
T Consensus 331 ----------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~ 399 (488)
T cd00216 331 ----------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWG 399 (488)
T ss_pred ----------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccC
Confidence 01122223 111110 13567888888888766554322110 11111
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecc
Q 003871 686 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 720 (790)
Q Consensus 686 l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~ 720 (790)
-.....+..|+.++.||.|+.+|.++|+.+-....
T Consensus 400 ~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 400 GSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred cceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 11123567899999999999999999999887653
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.21 E-value=0.00038 Score=80.41 Aligned_cols=234 Identities=12% Similarity=0.159 Sum_probs=144.6
Q ss_pred CCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC----C-
Q 003871 505 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC----T- 575 (790)
Q Consensus 505 ~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~----~- 575 (790)
.+..|.++.|. ++.++.+. +|.|.+-|.++... .....-..+|.+++|+||+ .++..+.++++.+-+-. .
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 44688999998 55555555 88888888876543 2223346789999999999 88888877777654321 0
Q ss_pred ------------------CceEEEEcCCCC---------------------CEEEEEEeCCCCEEEEEe----CC-CcEE
Q 003871 576 ------------------KKTKAKLKGHQN---------------------RITCLAYSLSLNVLVSSG----AD-AQLC 611 (790)
Q Consensus 576 ------------------~~~~~~l~~h~~---------------------~v~~l~~spdg~~l~s~s----~d-g~I~ 611 (790)
|+.-..|+|..+ .=+++.|--||+++|+.. .+ +.|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 011112221111 123588999999998832 23 7899
Q ss_pred EEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE--E--eCCcEEEEECCCCceeeeecC--CCCCCCeEE
Q 003871 612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I--HEGQIDVYEAPTLNHTSQLVP--DKMDLPITY 685 (790)
Q Consensus 612 vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~--~--~dg~I~iwd~~~~~~~~~~~~--~~h~~~v~~ 685 (790)
|||-+ |.. +....... +.-.+++|-|.|..+++ . +|+.|.+|.-+ |-....+.. +.....|..
T Consensus 226 V~drE-g~L------ns~se~~~---~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 226 VYDRE-GAL------NSTSEPVE---GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred Eeccc-chh------hcccCccc---ccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchhe
Confidence 99988 322 11111111 34568999999999998 2 67789999864 433333322 112445999
Q ss_pred EEEecCCCEEEE---EEcCCeEEEEECCCCeE--EEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEE
Q 003871 686 ATYSCDGKCIYV---SCKSGHVKVFDTSTLEL--RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 760 (790)
Q Consensus 686 l~~s~dg~~l~s---gs~dg~i~vwd~~~~~~--~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW 760 (790)
++|+.++..|+. ......|++|-+.+..- .+.+... + . . -+.|+|.....|..-..+|...++
T Consensus 295 L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~-----~--~---~--~~~W~p~~~~~L~v~~~sG~~~v~ 362 (1265)
T KOG1920|consen 295 LAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS-----Q--K---A--LLMWDPVTEKTLHVLRESGQRLVR 362 (1265)
T ss_pred eeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc-----c--c---c--cccccCCCceeEEEEecCCcEEEE
Confidence 999999999987 55556699999887642 2333211 1 1 1 266777444445544455655554
Q ss_pred ec
Q 003871 761 EP 762 (790)
Q Consensus 761 ~~ 762 (790)
+.
T Consensus 363 ~~ 364 (1265)
T KOG1920|consen 363 DF 364 (1265)
T ss_pred EE
Confidence 43
No 328
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.16 E-value=0.0046 Score=69.70 Aligned_cols=292 Identities=13% Similarity=0.044 Sum_probs=158.8
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEE
Q 003871 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 531 (790)
Q Consensus 453 g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd 531 (790)
+..+++++.++.|.-.|..+++. +|...................-..+++.+..++.++ ++.+.-.|
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~------------lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALD 136 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKE------------LWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALD 136 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCce------------eeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEE
Confidence 44677777788888888877655 454332110000000000000112344445555565 99999999
Q ss_pred CCCCcEEEEEcCCCC----CeEE-EEEcCCCeEEEEe------CCCcEEEEeCCCCceEEEEcCCCC-------------
Q 003871 532 LETFQTLATFANPPP----IATY-FILLPQDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQN------------- 587 (790)
Q Consensus 532 ~~~~~~~~~~~~~~~----~v~~-l~~s~~g~l~sgs------~dg~I~iwd~~~~~~~~~l~~h~~------------- 587 (790)
.++|+.+........ .+++ ..+ -++.++++. .+|.|+-+|..+|+.+-.+..-..
T Consensus 137 a~TGk~~W~~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~ 215 (527)
T TIGR03075 137 AKTGKVVWSKKNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVG 215 (527)
T ss_pred CCCCCEEeecccccccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccc
Confidence 999999887653211 1211 111 134455543 268999999999988765432110
Q ss_pred ------------------CEE-EEEEeCCCCEEEEEeCC-----C-----------cEEEEECCCCceeeceeeeeeccC
Q 003871 588 ------------------RIT-CLAYSLSLNVLVSSGAD-----A-----------QLCVWDAVGWKKLCSKFLHSFQTG 632 (790)
Q Consensus 588 ------------------~v~-~l~~spdg~~l~s~s~d-----g-----------~I~vwd~~~~~~~~~~~l~~~~~~ 632 (790)
.+. .+++.|...++..+..+ + .|.-.|+++|+.... .+.+ .
T Consensus 216 ~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~--~Q~~--~ 291 (527)
T TIGR03075 216 GEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWH--YQTT--P 291 (527)
T ss_pred cccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEe--eeCC--C
Confidence 111 23566655566555421 1 577778888876542 2211 1
Q ss_pred CCCCC----CCeEEEEEeCCCC---EEEEE-eCCcEEEEECCCCceeee--------ecC--CCCC-CC-----------
Q 003871 633 LVPET----TIVNHIQFHPDQI---HLLSI-HEGQIDVYEAPTLNHTSQ--------LVP--DKMD-LP----------- 682 (790)
Q Consensus 633 ~~~~~----~~v~~i~~sp~~~---~l~~~-~dg~I~iwd~~~~~~~~~--------~~~--~~h~-~~----------- 682 (790)
|.... ....-+.+..+|+ .++.+ .+|.+++.|..+|+.+.. +.. .... .+
T Consensus 292 ~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~ 371 (527)
T TIGR03075 292 HDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADG 371 (527)
T ss_pred CCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCC
Confidence 21000 1112222334665 44444 899999999999987621 100 0000 00
Q ss_pred -----------------eEEEEEecCCCEEEEEEcC---------------------------------CeEEEEECCCC
Q 003871 683 -----------------ITYATYSCDGKCIYVSCKS---------------------------------GHVKVFDTSTL 712 (790)
Q Consensus 683 -----------------v~~l~~s~dg~~l~sgs~d---------------------------------g~i~vwd~~~~ 712 (790)
-..++++|+..+++....+ |.|.-+|+.+|
T Consensus 372 ~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tG 451 (527)
T TIGR03075 372 KKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITG 451 (527)
T ss_pred CCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCC
Confidence 0125677766665543332 45777888888
Q ss_pred eEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccccccCC
Q 003871 713 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 773 (790)
Q Consensus 713 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~~~ 773 (790)
+.+-...... ....-.+.. .+..++.++.||.++.+|..+|+..|....
T Consensus 452 k~~W~~~~~~---------p~~~~~l~t---~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 452 KIVWEHKEDF---------PLWGGVLAT---AGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred ceeeEecCCC---------CCCCcceEE---CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 7776554210 000001121 345777788899999999999999997644
No 329
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.14 E-value=7e-06 Score=56.32 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=35.8
Q ss_pred CcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 003871 535 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 572 (790)
Q Consensus 535 ~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd 572 (790)
++++.++.+|...|++++|+|++ .+++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999 999999999999997
No 330
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.14 E-value=0.006 Score=63.80 Aligned_cols=280 Identities=15% Similarity=0.117 Sum_probs=134.1
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEe-c
Q 003871 448 IYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S 523 (790)
Q Consensus 448 ~~spdg~~l~s~~~-dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~-s 523 (790)
+|.+||+.|+.++. ||.-.+|- .|..++...+.+- +.........++ ++.++.. +
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~-------------------lDL~t~~i~QLTd--g~g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYL-------------------LDLATGEITQLTD--GPGDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEE-------------------EETTT-EEEE-----SS-B-TTT-EE-TTSSEEEEEET
T ss_pred CcCCCCCEEEEEeccCCCcceEE-------------------EEcccCEEEECcc--CCCCCccceEEecCCCeEEEEEC
Confidence 57899988888777 66555543 2334444554332 111212223333 5555444 4
Q ss_pred CCeEEEEECCCCcEEEEEcCCCCCeEEEEEc--CCCeEEEEeC----C-------------------CcEEEEeCCCCce
Q 003871 524 GGKISIFSLETFQTLATFANPPPIATYFILL--PQDLFAFGFD----D-------------------SSILVHCPCTKKT 578 (790)
Q Consensus 524 dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s--~~g~l~sgs~----d-------------------g~I~iwd~~~~~~ 578 (790)
+..|.-.|+.+.+....+..+..-+-...|. .++..++|.. | ..|.-.|+.+|+.
T Consensus 101 ~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~ 180 (386)
T PF14583_consen 101 GRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER 180 (386)
T ss_dssp TTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred CCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence 6788999999987767776666666555664 3342232221 1 2466678888876
Q ss_pred EEEEcCCCCCEEEEEEeC-CCCEEEEEeC------CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCE
Q 003871 579 KAKLKGHQNRITCLAYSL-SLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 651 (790)
Q Consensus 579 ~~~l~~h~~~v~~l~~sp-dg~~l~s~s~------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~ 651 (790)
...+. -...+..+.|+| |...|+.|-. |..|.+-|..+... .++..-..+ ..+..=-|.|||..
T Consensus 181 ~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~---~~v~~~~~~-----e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 181 KVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV---KKVHRRMEG-----ESVGHEFWVPDGST 251 (386)
T ss_dssp EEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS---TT-----EEEEEEEE-TTSS-
T ss_pred eEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc---eeeecCCCC-----cccccccccCCCCE
Confidence 55554 345678899999 4555666543 22344444443221 222211111 45677789999988
Q ss_pred EEE-E-----eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC----------------CeEEEEEC
Q 003871 652 LLS-I-----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----------------GHVKVFDT 709 (790)
Q Consensus 652 l~~-~-----~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d----------------g~i~vwd~ 709 (790)
+.. + .+..|.-+|+.+++...... ......+--++||++++-=+.| -.|+++++
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~ 327 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDV 327 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEET
T ss_pred EEEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecc
Confidence 875 3 23357888888876543221 2345667777999988744433 25778899
Q ss_pred CCCeEEEEecccc---ccCCCCcccccceEEEEEecCCCCEE-EEEeCCCcEEEEecCCC
Q 003871 710 STLELRCQINLTA---YAQPGTISLELYPLVIAAHPLEPNRI-ALGLTNGRVHVIEPLES 765 (790)
Q Consensus 710 ~~~~~~~~~~~~~---~~~~gh~~~~v~~~~v~~sp~d~~~l-as~s~Dg~i~iW~~~~~ 765 (790)
..++...... |. ....|+. .+.--...|+| ||+++ .++...|...||-++-+
T Consensus 328 ~~~~~~~l~~-h~~sw~v~~~~~--q~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 328 EAGRFRKLAR-HDTSWKVLDGDR--QVTHPHPSFSP-DGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp TTTEEEEEEE--------BTTBS--STT----EE-T-TSSEEEEEE-TTSS-EEEEEE--
T ss_pred ccCceeeeee-ccCcceeecCCC--ccCCCCCccCC-CCCEEEEECCCCCCccEEEEeCc
Confidence 8877543221 21 1112221 11222689999 77765 55567788777765433
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.12 E-value=0.0004 Score=75.62 Aligned_cols=221 Identities=10% Similarity=0.048 Sum_probs=113.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEE
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 519 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l 519 (790)
......+.++|+|++++++ .||...++....... ...+.-..++|. .+.+
T Consensus 32 ~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~----------------------------k~~G~g~~~vw~~~n~y 82 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN----------------------------KAFGSGLSFVWSSRNRY 82 (443)
T ss_dssp SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE----------------------------EEEEE-SEEEE-TSSEE
T ss_pred CcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc----------------------------cccCceeEEEEecCccE
Confidence 3457889999999988884 467777776322110 122334456777 4555
Q ss_pred EEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCC
Q 003871 520 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 597 (790)
Q Consensus 520 ~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd 597 (790)
|+-. .++|.++.--+.+..+.+... ..+..+.. | .|...+.+ .|.+||..+++.+..+... +|..+.|+++
T Consensus 83 Av~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~ 155 (443)
T PF04053_consen 83 AVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDD 155 (443)
T ss_dssp EEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred EEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECC
Confidence 5555 788998632222222333322 22344432 7 66666544 8999999999999998743 4899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCce------eeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCce-
Q 003871 598 LNVLVSSGADAQLCVWDAVGWKK------LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH- 670 (790)
Q Consensus 598 g~~l~s~s~dg~I~vwd~~~~~~------~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~- 670 (790)
|++++..+.+ .+.+++...... --...+..+.+-. ..|.+.+|..+ -++.+... .++- +-.|+.
T Consensus 156 g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~----~~IkSg~W~~d-~fiYtT~~-~lkY--l~~Ge~~ 226 (443)
T PF04053_consen 156 GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS----ERIKSGCWVED-CFIYTTSN-HLKY--LVNGETG 226 (443)
T ss_dssp SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT-EEEEE-TT-EEEE--EETTEEE
T ss_pred CCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec----ceeEEEEEEcC-EEEEEcCC-eEEE--EEcCCcc
Confidence 9999998855 777777554200 0000112111101 47888899876 33333333 6655 333432
Q ss_pred -eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 671 -TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 671 -~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
+..+ ..++.=+.+.|+.+.++....|+.|..+.+..
T Consensus 227 ~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 227 IIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred eEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 2222 55677777888777888888888888887653
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.11 E-value=0.00054 Score=73.81 Aligned_cols=110 Identities=14% Similarity=0.135 Sum_probs=80.5
Q ss_pred CCCeEEEEec---CcEEEEec-----CC----eEEEEECCCCcEEE--EE-cCCCCCeEEEEEcCCC-eEEEEeCCCcEE
Q 003871 506 KDSISCFALR---GSHLFSAS-----GG----KISIFSLETFQTLA--TF-ANPPPIATYFILLPQD-LFAFGFDDSSIL 569 (790)
Q Consensus 506 ~~~V~~l~~s---~~~l~s~s-----dg----~I~vwd~~~~~~~~--~~-~~~~~~v~~l~~s~~g-~l~sgs~dg~I~ 569 (790)
.....++.|+ +..+.+.. +| .-.+|+...++..+ .. -.....|.+++++|+. .++.|+.||+|.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 3445677888 45554432 33 24567766554322 11 1456789999999999 999999999999
Q ss_pred EEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 003871 570 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (790)
Q Consensus 570 iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~ 617 (790)
+||...+... +....-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus 285 LyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 285 LYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9998766333 223445678999999999999999999999999876
No 333
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.10 E-value=0.00052 Score=74.90 Aligned_cols=278 Identities=12% Similarity=0.097 Sum_probs=152.1
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--Cc
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 517 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~ 517 (790)
|...|.--+++..+++++.|++-|.+.+|+-..+.. .....++..+.+.....+ ..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~----------------------~~~~~~~~~~~~~~~~vs~~e~ 89 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM----------------------RKLKNEGATGITCVRSVSSVEY 89 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhh----------------------hcccccCccceEEEEEecchhH
Confidence 566677777888999999999999999998765433 111111234445555666 45
Q ss_pred EEEEec-CCeEEEEECCCCcEE-----EEE-cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc----eEEEEcCC
Q 003871 518 HLFSAS-GGKISIFSLETFQTL-----ATF-ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK----TKAKLKGH 585 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~~~~~~-----~~~-~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~----~~~~l~~h 585 (790)
++|.|+ .|.|.++-+..+... ... ..|...|++++|++++ .+++|...|+|..-.+.+.. ..+.+-.-
T Consensus 90 lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ 169 (726)
T KOG3621|consen 90 LVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE 169 (726)
T ss_pred hhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc
Confidence 556666 689999887653221 111 2467889999999999 99999999999988877621 11222223
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCC-CeEEEEEeCC-----CCEEEEEeCCc
Q 003871 586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT-IVNHIQFHPD-----QIHLLSIHEGQ 659 (790)
Q Consensus 586 ~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~-~v~~i~~sp~-----~~~l~~~~dg~ 659 (790)
.+.|-.+.+. ++..|++... ...+++.+.++. ..+.+-+.. + .-...+|-|. ...|+++.- .
T Consensus 170 ds~IVQlD~~-q~~LLVStl~--r~~Lc~tE~eti---~QIG~k~R~-----~~~~~GACF~~g~~~~q~~~IycaRP-G 237 (726)
T KOG3621|consen 170 DSEIVQLDYL-QSYLLVSTLT--RCILCQTEAETI---TQIGKKPRK-----SLIDFGACFFPGQCKAQKPQIYCARP-G 237 (726)
T ss_pred CcceEEeecc-cceehHhhhh--hhheeecchhHH---HHhcCCCcC-----CccccceEEeeccccCCCceEEEecC-C
Confidence 4566666554 3334443332 233555554221 111101111 1 1223344432 234444432 3
Q ss_pred EEEEECC-CCceeeeecCCC-----------C-----------CCCeEEEEEe----cCCCEEEEEEcCCeEEEEECCCC
Q 003871 660 IDVYEAP-TLNHTSQLVPDK-----------M-----------DLPITYATYS----CDGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 660 I~iwd~~-~~~~~~~~~~~~-----------h-----------~~~v~~l~~s----~dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
.++|... .|..+++..... + ...-..+.|. -.+..+++-++-| |||+|..+.
T Consensus 238 ~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~ 316 (726)
T KOG3621|consen 238 LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNS 316 (726)
T ss_pred CceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccc
Confidence 5667654 244433321100 0 0001111111 1223455555545 899999887
Q ss_pred eEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 713 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 713 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
+...-.. | ...| .+|+. +++-|..-..||.+++..+.+++
T Consensus 317 ~v~l~se-------~--~~DI--~dVs~---~~neiFvL~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 317 QVYLWSE-------G--GHDI--LDVSH---CGNEIFVLNLDRGLKVESVASRQ 356 (726)
T ss_pred eEEEeec-------C--CCce--eEEee---cCceEEEEecCCceeEEEeehhH
Confidence 7654432 1 1223 35654 45556666678888888887764
No 334
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.09 E-value=0.0024 Score=68.98 Aligned_cols=113 Identities=17% Similarity=0.247 Sum_probs=79.3
Q ss_pred CeEEEEEeCC-CCEEEE-----EeCCc----EEEEECCCCce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 003871 639 IVNHIQFHPD-QIHLLS-----IHEGQ----IDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 706 (790)
Q Consensus 639 ~v~~i~~sp~-~~~l~~-----~~dg~----I~iwd~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~v 706 (790)
...++.||-. ...+.+ +.+|. -.+|++...+. +..... .....+.+++++|+...++.|+.||.|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3466777763 333433 13443 45677654432 211111 24778999999999999999999999999
Q ss_pred EECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 707 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 707 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
||...+.-... ...+-+..++||| +|.++++|+.-|.+.+||+.-.
T Consensus 286 yD~~~~~t~~~------------ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 286 YDTTRGVTLLA------------KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCCeeeee------------eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 99987743222 1134466999999 8999999999999999998643
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=8.4e-05 Score=81.82 Aligned_cols=99 Identities=23% Similarity=0.307 Sum_probs=77.7
Q ss_pred CcEEEEec-----CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCE
Q 003871 516 GSHLFSAS-----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 589 (790)
Q Consensus 516 ~~~l~s~s-----dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v 589 (790)
..++++++ .|.|.||- ++|++.+... .+-.+++++|+|.. .++.|-.-|.+.+|...+.+.......|+.+|
T Consensus 27 ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i 104 (1416)
T KOG3617|consen 27 EPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPI 104 (1416)
T ss_pred CceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCc
Confidence 34555444 47888874 4566544332 22345789999999 99999999999999988776665666799999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECC
Q 003871 590 TCLAYSLSLNVLVSSGADAQLCVWDAV 616 (790)
Q Consensus 590 ~~l~~spdg~~l~s~s~dg~I~vwd~~ 616 (790)
..+.|||+|..++++..-|.+.+|...
T Consensus 105 ~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 105 QGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeEEecCCCCeEEEcCCCceeEEEEee
Confidence 999999999999999999999999876
No 336
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.06 E-value=0.00091 Score=71.89 Aligned_cols=226 Identities=17% Similarity=0.130 Sum_probs=125.6
Q ss_pred CCCeEEEEec--CcEEEEecCCeEEEEECCCCcEEEEEc-CC----------------CCCeEEEEEcCCC-eEEEEeCC
Q 003871 506 KDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFA-NP----------------PPIATYFILLPQD-LFAFGFDD 565 (790)
Q Consensus 506 ~~~V~~l~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~-~~----------------~~~v~~l~~s~~g-~l~sgs~d 565 (790)
...+....|+ |+.++...++.|.+++..++...+.-. +. -+.-..+.||||| +|+....|
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 4677888999 999999999999999988774433211 20 1123568899999 66654322
Q ss_pred -Cc-----------------------------------EEEEeCCCCceEE-EE----cCCCCCEEEEEEeCCCCEEEE-
Q 003871 566 -SS-----------------------------------ILVHCPCTKKTKA-KL----KGHQNRITCLAYSLSLNVLVS- 603 (790)
Q Consensus 566 -g~-----------------------------------I~iwd~~~~~~~~-~l----~~h~~~v~~l~~spdg~~l~s- 603 (790)
.. +.++|+.+++... .. ..-...+..+.|.++++.++.
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~ 201 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ 201 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEE
Confidence 22 3344554443321 11 112345778999999884443
Q ss_pred -EeCCC---cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEe-CCCCEEEE-E-eCCc--EEEEECCCCceeeee
Q 003871 604 -SGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH-PDQIHLLS-I-HEGQ--IDVYEAPTLNHTSQL 674 (790)
Q Consensus 604 -~s~dg---~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~s-p~~~~l~~-~-~dg~--I~iwd~~~~~~~~~~ 674 (790)
.+.+. .+.++|..++.... .......+.- .......|. +++..++. + .+|. |++++...+.. ..+
T Consensus 202 ~~nR~q~~~~l~~~d~~tg~~~~--~~~e~~~~Wv---~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~l 275 (353)
T PF00930_consen 202 WLNRDQNRLDLVLCDASTGETRV--VLEETSDGWV---DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQL 275 (353)
T ss_dssp EEETTSTEEEEEEEEECTTTCEE--EEEEESSSSS---SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EES
T ss_pred EcccCCCEEEEEEEECCCCceeE--EEEecCCcce---eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-ecc
Confidence 33332 36677887754321 1121222211 122355655 66665554 4 5554 77778866553 344
Q ss_pred cCCCCCCCeEE-EEEecCCCEEE-EEEc----CCeEEEEECC-CCeEEEEeccccccCCCCcccccceEEEEEecCCCCE
Q 003871 675 VPDKMDLPITY-ATYSCDGKCIY-VSCK----SGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 747 (790)
Q Consensus 675 ~~~~h~~~v~~-l~~s~dg~~l~-sgs~----dg~i~vwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~ 747 (790)
.. ..-.|.. +.|+++++.|+ ++.. ...|+.-++. ++.. ..+.... +. .. .++||| ++++
T Consensus 276 T~--G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~----~~----~~--~~~~Sp-dg~y 341 (353)
T PF00930_consen 276 TS--GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCED----GD----HY--SASFSP-DGKY 341 (353)
T ss_dssp S---SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTS----ST----TE--EEEE-T-TSSE
T ss_pred cc--CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCC----CC----ce--EEEECC-CCCE
Confidence 43 2556755 67888887665 4544 3467777888 5554 4443221 21 14 899999 7887
Q ss_pred EEEE
Q 003871 748 IALG 751 (790)
Q Consensus 748 las~ 751 (790)
++-.
T Consensus 342 ~v~~ 345 (353)
T PF00930_consen 342 YVDT 345 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6643
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00079 Score=75.04 Aligned_cols=203 Identities=13% Similarity=0.148 Sum_probs=130.3
Q ss_pred CeEEEEecCcEEEEec-CCeEEEEECCCCcEEEEEcCCCCC-eEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCC---
Q 003871 508 SISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPI-ATYFILLPQD-LFAFGFDDS-----SILVHCPCTK--- 576 (790)
Q Consensus 508 ~V~~l~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~-v~~l~~s~~g-~l~sgs~dg-----~I~iwd~~~~--- 576 (790)
.|+|+.-++..++.|+ +|.|.+.+-. .+.++.+..+... |..+....+. .+++-+.|+ .++||+++.-
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 5666655577888888 8998888743 4455777777766 4444433333 666655554 5899998632
Q ss_pred ---ceE--EEEcC-----CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEe
Q 003871 577 ---KTK--AKLKG-----HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 646 (790)
Q Consensus 577 ---~~~--~~l~~-----h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~s 646 (790)
.++ ..+.+ .+.++.+++.+.+-+.+|+|-.+|.|..+.-+--+-...+... ...+. .+|+.+++.
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~-~~~~~----~pITgL~~~ 180 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY-SHRGK----EPITGLALR 180 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee-eccCC----CCceeeEEe
Confidence 233 12222 3567889999999999999999999998854321111111111 11222 689999999
Q ss_pred CCCCE-EEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 003871 647 PDQIH-LLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 647 p~~~~-l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~ 718 (790)
.++.. +.++.-..|.+|.+. |+....-....|+.++.|..|++...-+++++ +..+++|+.+....-..+
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred cCCceeEEEEecceeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 99877 444677789999997 44422222345688899999987655344433 467899998754443333
No 338
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.00 E-value=0.00074 Score=72.59 Aligned_cols=264 Identities=11% Similarity=0.011 Sum_probs=146.2
Q ss_pred eeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCC
Q 003871 348 LKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEP 427 (790)
Q Consensus 348 l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~ 427 (790)
+||+|+.+++.. .+......+ ....|| |||+.+ |-.. ++.+.+++...
T Consensus 25 y~i~d~~~~~~~---------~l~~~~~~~-------~~~~~s-------P~g~~~----~~v~-~~nly~~~~~~---- 72 (353)
T PF00930_consen 25 YYIYDIETGEIT---------PLTPPPPKL-------QDAKWS-------PDGKYI----AFVR-DNNLYLRDLAT---- 72 (353)
T ss_dssp EEEEETTTTEEE---------ESS-EETTB-------SEEEE--------SSSTEE----EEEE-TTEEEEESSTT----
T ss_pred EEEEecCCCceE---------ECcCCcccc-------ccceee-------cCCCee----EEEe-cCceEEEECCC----
Confidence 449999998764 222224455 788899 999998 5554 47899998863
Q ss_pred CceeeeeccCCCC--------------CCceEEEEEcCCCCEEEEEeCC-CcEEEEec---CCC-C-c---------ccc
Q 003871 428 SECRTLLLPDNSF--------------GGRVVRLIYSHSGDFLVALTQT-ATHKLWKW---QSN-K-Q---------SLE 478 (790)
Q Consensus 428 ~~~~~~~l~~~~h--------------~~~V~~l~~spdg~~l~s~~~d-g~i~vw~~---~~~-~-~---------~~g 478 (790)
+...+++..+..+ -+.-.++.|||||++||....| ..+..+.+ ... . . ..|
T Consensus 73 ~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 73 GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence 4444444222000 1123467899999999988774 44444333 222 1 1 234
Q ss_pred ccccccccccccCCCceeeeeccc---CCCCCCeEEEEec--CcEEEEec---C---CeEEEEECCCCcEEEEEcC-CCC
Q 003871 479 EENVNMESQLYQPSSKLVMTNDIA---ADPKDSISCFALR--GSHLFSAS---G---GKISIFSLETFQTLATFAN-PPP 546 (790)
Q Consensus 479 ~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~V~~l~~s--~~~l~s~s---d---g~I~vwd~~~~~~~~~~~~-~~~ 546 (790)
.....+...+++..++........ ......+..+.|. ++.++..- + -.+.+.|..++.+...+.. ...
T Consensus 153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~ 232 (353)
T PF00930_consen 153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDG 232 (353)
T ss_dssp S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSS
T ss_pred CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCc
Confidence 444445557788888775432222 1345668889998 55244332 2 2577778877765433321 122
Q ss_pred C---eEEEEEc-CCC--eEEEEeCCC--cEEEEeCCCCceEEEEcCCCCCEEE-EEEeCCCCEEE-EEeCC----CcEEE
Q 003871 547 I---ATYFILL-PQD--LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNRITC-LAYSLSLNVLV-SSGAD----AQLCV 612 (790)
Q Consensus 547 ~---v~~l~~s-~~g--~l~sgs~dg--~I~iwd~~~~~~~~~l~~h~~~v~~-l~~spdg~~l~-s~s~d----g~I~v 612 (790)
. -....+. +++ ++.....+| .|++++..++. ...+....-.|.. +.++++++.+. ++..+ ..+..
T Consensus 233 Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~ 311 (353)
T PF00930_consen 233 WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYR 311 (353)
T ss_dssp SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred ceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEE
Confidence 1 2345554 666 666666777 56667776555 4456555566755 67888877655 44442 24555
Q ss_pred EECC-CCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE
Q 003871 613 WDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (790)
Q Consensus 613 wd~~-~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~ 654 (790)
-++. ++. +..+..... .-..+.|||++++++.
T Consensus 312 v~~~~~~~------~~~LT~~~~----~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 312 VSLDSGGE------PKCLTCEDG----DHYSASFSPDGKYYVD 344 (353)
T ss_dssp EETTETTE------EEESSTTSS----TTEEEEE-TTSSEEEE
T ss_pred EEeCCCCC------eEeccCCCC----CceEEEECCCCCEEEE
Confidence 5666 433 222333221 2258999999999986
No 339
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.98 E-value=0.0044 Score=64.78 Aligned_cols=287 Identities=13% Similarity=0.081 Sum_probs=127.6
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
+.=+|. +||+.| ++.+..||.-.+|-++- .++...+++- +.........++|+++.++....+..
T Consensus 39 ~~~~ft-------~dG~kl---lF~s~~dg~~nly~lDL--~t~~i~QLTd---g~g~~~~g~~~s~~~~~~~Yv~~~~~ 103 (386)
T PF14583_consen 39 YQNCFT-------DDGRKL---LFASDFDGNRNLYLLDL--ATGEITQLTD---GPGDNTFGGFLSPDDRALYYVKNGRS 103 (386)
T ss_dssp TS--B--------TTS-EE---EEEE-TTSS-EEEEEET--TT-EEEE------SS-B-TTT-EE-TTSSEEEEEETTTE
T ss_pred cCCCcC-------CCCCEE---EEEeccCCCcceEEEEc--ccCEEEECcc---CCCCCccceEEecCCCeEEEEECCCe
Confidence 455777 889777 36666777766666543 3577777652 11122334667898888877776677
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeee-ecccCCCCCCeEEEEec---CcE---------EEEec-CCeEEEE
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT-NDIAADPKDSISCFALR---GSH---------LFSAS-GGKISIF 530 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~V~~l~~s---~~~---------l~s~s-dg~I~vw 530 (790)
++--|+.+.+. ..||....+..-. .....+....+..+... ... +..+. ...|.-.
T Consensus 104 l~~vdL~T~e~----------~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 104 LRRVDLDTLEE----------RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp EEEEETTT--E----------EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred EEEEECCcCcE----------EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 88778776443 0122222111100 00000000001111111 000 00011 3356677
Q ss_pred ECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeC---CC-cEEEEeCCC-CceEEEEcCCCC--CEEEEEEeCCCCEE
Q 003871 531 SLETFQTLATFANPPPIATYFILLPQD--LFAFGFD---DS-SILVHCPCT-KKTKAKLKGHQN--RITCLAYSLSLNVL 601 (790)
Q Consensus 531 d~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~---dg-~I~iwd~~~-~~~~~~l~~h~~--~v~~l~~spdg~~l 601 (790)
|+.+|+....+. ....+..+.|+|.. .|+-|-. +. .-+||-+++ |...+.+..+.. .+..=-|.|||..|
T Consensus 174 dl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 174 DLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp ETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred ECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence 888887655554 45667889999998 5544432 22 235565433 333444433322 23344589999876
Q ss_pred EEEe-----CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCC----------------c
Q 003871 602 VSSG-----ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG----------------Q 659 (790)
Q Consensus 602 ~s~s-----~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg----------------~ 659 (790)
.--+ .+..|.-+|+.+++... +... .....+.-++||++++. |.|. -
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~---~~~~--------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~ 321 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRR---LMEM--------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW 321 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEE---EEEE---------SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred EEEeecCCCCceEEEeeCCCCCCceE---EEeC--------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence 6532 24467778888865321 2211 13446677899998887 5432 4
Q ss_pred EEEEECCCCceeeeecC------CCCCC--CeEEEEEecCCCEEEEEE-cCCeEEEEE
Q 003871 660 IDVYEAPTLNHTSQLVP------DKMDL--PITYATYSCDGKCIYVSC-KSGHVKVFD 708 (790)
Q Consensus 660 I~iwd~~~~~~~~~~~~------~~h~~--~v~~l~~s~dg~~l~sgs-~dg~i~vwd 708 (790)
|+++++..++....... ..+.. .=....|+|||++++-.| ..|...||-
T Consensus 322 i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 322 IYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp EEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred EEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 67788877664322110 00111 124679999999887544 456655553
No 340
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.96 E-value=0.0034 Score=67.56 Aligned_cols=270 Identities=12% Similarity=0.132 Sum_probs=140.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccc-cccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEE
Q 003871 443 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL-EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS 521 (790)
Q Consensus 443 ~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~-g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s 521 (790)
.|+.+.|+++..-|+++...|.|.+|.+..++... ....... +.. .-.+ .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~-----~~~------------------~~~~------~ 53 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDL-----DYN------------------FRRF------S 53 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------------------------S--------
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCccc-----Ccc------------------cccc------c
Confidence 48899999998889999999999999987654410 0000000 000 0000 0
Q ss_pred ecCCeEEEEECCC---------CcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEE--cC------
Q 003871 522 ASGGKISIFSLET---------FQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL--KG------ 584 (790)
Q Consensus 522 ~sdg~I~vwd~~~---------~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l--~~------ 584 (790)
..++.-.+-|+.. ..+..-+....++|++++.|.-|++|+|..+|.+.|.|++....+..- ..
T Consensus 54 ~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~ 133 (395)
T PF08596_consen 54 LNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKS 133 (395)
T ss_dssp GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS
T ss_pred ccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccc
Confidence 0000111122211 123333445578999999987779999999999999999877666542 22
Q ss_pred CCCCEEEEEEeC-----CC---CEEEEEeCCCcEEEEECC--CCceeeceeeeeeccCCCCCCCCeEEEE-EeCC-----
Q 003871 585 HQNRITCLAYSL-----SL---NVLVSSGADAQLCVWDAV--GWKKLCSKFLHSFQTGLVPETTIVNHIQ-FHPD----- 648 (790)
Q Consensus 585 h~~~v~~l~~sp-----dg---~~l~s~s~dg~I~vwd~~--~~~~~~~~~l~~~~~~~~~~~~~v~~i~-~sp~----- 648 (790)
....|+++.|+. |+ -.+++|...|.+.+|.+. .+......... ....+. ++|..+. |+.+
T Consensus 134 ~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~-~~~~~~---~~i~~I~~i~~~~G~~a 209 (395)
T PF08596_consen 134 SSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAG-ATTNHD---SPILSIIPINADTGESA 209 (395)
T ss_dssp ----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEE-EE--SS-------EEEEEETTT--B-
T ss_pred cccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEee-ccccCC---CceEEEEEEECCCCCcc
Confidence 234688888863 33 368889999999999875 21111111111 111222 3555544 3222
Q ss_pred ----------------CCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEe-----cCCCEEEEEEcCCeEEEE
Q 003871 649 ----------------QIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-----CDGKCIYVSCKSGHVKVF 707 (790)
Q Consensus 649 ----------------~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s-----~dg~~l~sgs~dg~i~vw 707 (790)
..+++++.+..++++...+.+....... .......+++- ..+..|++-..+|.|++|
T Consensus 210 ~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 210 LATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred cCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 1255557788899999988877665541 12334445552 356788888999999999
Q ss_pred ECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC
Q 003871 708 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 754 (790)
Q Consensus 708 d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D 754 (790)
.+..-+.+..+.... .-....+. ..++++ +|..++-.|..
T Consensus 288 SLP~Lkei~~~~l~~----~~d~~~~~--~ssis~-~Gdi~~~~gps 327 (395)
T PF08596_consen 288 SLPSLKEIKSVSLPP----PLDSRRLS--SSSISR-NGDIFYWTGPS 327 (395)
T ss_dssp ETTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE-SSS
T ss_pred ECCCchHhhcccCCC----cccccccc--ccEECC-CCCEEEEeCcc
Confidence 999988887766421 10112233 556678 78877766543
No 341
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.96 E-value=1.2e-05 Score=53.19 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHHHHhcHHHHHHHHHHhcCCc
Q 003871 12 TYTHLITLIMKFLEEENFKESLQALEQESKIF 43 (790)
Q Consensus 12 ~~~e~~~li~q~l~~~g~~~s~~~l~~Esg~~ 43 (790)
.++++.++|+|||...||.+|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 37899999999999999999999999999975
No 342
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.94 E-value=3.3e-06 Score=90.22 Aligned_cols=204 Identities=13% Similarity=0.118 Sum_probs=132.4
Q ss_pred CCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCce--EEEEcCCCCCEEEEEEeC-CCCEEEEEeC----CCcEEEEEC
Q 003871 546 PIATYFILLPQD---LFAFGFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSL-SLNVLVSSGA----DAQLCVWDA 615 (790)
Q Consensus 546 ~~v~~l~~s~~g---~l~sgs~dg~I~iwd~~~~~~--~~~l~~h~~~v~~l~~sp-dg~~l~s~s~----dg~I~vwd~ 615 (790)
..+.|+++.-+. .+++|..+|.|.+-..+...- .....+|..+.++++|++ |.++||.|-+ |..+.+||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 445677665444 889999999999988765432 234566888899999998 6778887743 567999999
Q ss_pred CCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCC-ceeeeecCCCCCCCeEEEEEec-CC
Q 003871 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSC-DG 692 (790)
Q Consensus 616 ~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~l~~s~-dg 692 (790)
.++-........ +..+.. ....+++|..+.+.+.+| ....++++|++.. .....+ .+..+..+.++| .+
T Consensus 137 ~s~ltvPke~~~-fs~~~l---~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv----nTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 137 NSLLTVPKESPL-FSSSTL---DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV----NTKYVQGITVDPFSP 208 (783)
T ss_pred ccccCCCccccc-cccccc---cCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh----hhhhcccceecCCCC
Confidence 985211111111 222111 356688898888888887 6778999999832 222222 255677888888 77
Q ss_pred CEEEEEEcCCeEEEEEC-CCCe-EEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC-CcEEEEecCC
Q 003871 693 KCIYVSCKSGHVKVFDT-STLE-LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPLE 764 (790)
Q Consensus 693 ~~l~sgs~dg~i~vwd~-~~~~-~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D-g~i~iW~~~~ 764 (790)
.|+++.. ||.|.+||. .+-+ ++..+. + .....+-....++|.|.....+++...| ++|+.+++..
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~-~-----~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIIL-R-----NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHh-h-----CCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 7887765 999999993 2222 111111 0 0000011244999999766677777765 6899998753
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.00062 Score=73.92 Aligned_cols=179 Identities=16% Similarity=0.143 Sum_probs=112.6
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEE---eCC-CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCC
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG---FDD-SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 599 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg---s~d-g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~ 599 (790)
..+.+-|.+ +.....+......+..-+|+|++ .++.. ... ..++++|+.+++....+. ..+.-...+|+|||+
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 455565655 66666666566677888999999 43322 222 369999999886544433 223334578999999
Q ss_pred EEEEEe-CCCc--EEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCC--cEEEEECCCCceee
Q 003871 600 VLVSSG-ADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEG--QIDVYEAPTLNHTS 672 (790)
Q Consensus 600 ~l~s~s-~dg~--I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg--~I~iwd~~~~~~~~ 672 (790)
+|+.+. .||. |.+.|+.++. +..+.... +.-+.-.|+|||+.++.. ..| .|.++|...+.. .
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~------~~~Lt~~~----gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~ 319 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKN------LPRLTNGF----GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-T 319 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCc------ceecccCC----ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-e
Confidence 877654 4554 6777887744 11122221 233467899999999974 333 488888876654 3
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEc-CCe--EEEEECCCCeEEEEe
Q 003871 673 QLVPDKMDLPITYATYSCDGKCIYVSCK-SGH--VKVFDTSTLELRCQI 718 (790)
Q Consensus 673 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~-dg~--i~vwd~~~~~~~~~~ 718 (790)
.+... ...-..-.|+|||++++..+. +|. |.+.|+.++.....+
T Consensus 320 riT~~--~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 320 RLTFS--GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred Eeecc--CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 33332 222227789999999987664 344 777777776644443
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.91 E-value=0.0025 Score=69.51 Aligned_cols=220 Identities=16% Similarity=0.152 Sum_probs=118.1
Q ss_pred CCCeEEEEec--CcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEc
Q 003871 506 KDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK 583 (790)
Q Consensus 506 ~~~V~~l~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~ 583 (790)
...+..+.++ |++++++++|.-.++.....+.... +.-..++|.+.+.+|+-...++|.++.--+.+..+.++
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~ 106 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIK 106 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT----
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCccccceEEc
Confidence 3446778888 8888888899999998554443322 22346788886677777778899996322233323343
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEE
Q 003871 584 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVY 663 (790)
Q Consensus 584 ~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iw 663 (790)
. ...+..+-. |..|...+.+ .|.+||..+++.+.. +.. .+|..+.|+++|.+++...+..++|+
T Consensus 107 ~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~-----i~v------~~vk~V~Ws~~g~~val~t~~~i~il 170 (443)
T PF04053_consen 107 L-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRR-----IDV------SAVKYVIWSDDGELVALVTKDSIYIL 170 (443)
T ss_dssp --SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEE-----ESS-------E-EEEEE-TTSSEEEEE-S-SEEEE
T ss_pred C-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeE-----Eec------CCCcEEEEECCCCEEEEEeCCeEEEE
Confidence 2 123444422 7777777654 899999999654432 221 25899999999999999777788888
Q ss_pred ECCCC-----------ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccc
Q 003871 664 EAPTL-----------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 732 (790)
Q Consensus 664 d~~~~-----------~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~ 732 (790)
+.... .....+.. -...|.+.+|..| -++++. .. +++. +..|+.-.. . |-..+
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i-~--------~ld~~ 234 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETGII-A--------HLDKP 234 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEE-E--------E-SS-
T ss_pred EecchhcccccccCchhceEEEEE--ecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcceE-E--------EcCCc
Confidence 76432 02222210 1567888899866 344443 33 6665 444543221 1 12446
Q ss_pred cceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 733 LYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 733 v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
++ -+.+.| ..+.+.....|+.|..+.+...
T Consensus 235 ~y--llgy~~-~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 235 LY--LLGYLP-KENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp -E--EEEEET-TTTEEEEE-TT--EEEEE--HH
T ss_pred eE--EEEEEc-cCCEEEEEECCCCEEEEEECHH
Confidence 67 556667 5678888889999998877643
No 345
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.87 E-value=0.0026 Score=70.38 Aligned_cols=92 Identities=21% Similarity=0.125 Sum_probs=67.8
Q ss_pred CcEEEEECCC-----CceeeeecCCCCCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeE------------EEEec
Q 003871 658 GQIDVYEAPT-----LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLEL------------RCQIN 719 (790)
Q Consensus 658 g~I~iwd~~~-----~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-dg~i~vwd~~~~~~------------~~~~~ 719 (790)
+.|.+.|.++ ...+..+.. ......+.++|||+++++++. +.+|.|.|+.+.+. +....
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 4577888776 344444443 567889999999999886654 89999999988552 22222
Q ss_pred cccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 720 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 720 ~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
. | ..++..+|.+ +|+...|-.-|..|..|++..
T Consensus 373 v------G-----lGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 L------G-----LGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred c------C-----CCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 1 2 1266789999 788888889999999999876
No 346
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.85 E-value=0.00032 Score=78.39 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=110.1
Q ss_pred CeEEEEecCcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeC---------CCcEEEEeCCCC
Q 003871 508 SISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---------DSSILVHCPCTK 576 (790)
Q Consensus 508 ~V~~l~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~---------dg~I~iwd~~~~ 576 (790)
.|.-++.+++++.+|. .|+|.+-|..+.+.++++..|.+.|..+.. .| .|++++. |.-|++||++.-
T Consensus 179 ~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm 256 (1118)
T KOG1275|consen 179 GVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM 256 (1118)
T ss_pred ceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhh
Confidence 3666666688888888 899999999999999999999999987665 46 7777764 446899999987
Q ss_pred ceEEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE
Q 003871 577 KTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 655 (790)
Q Consensus 577 ~~~~~l~~h~~~v~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~ 655 (790)
+.+..+.-+.++ .-+.|+|. ...+++++..|...+-|..+............+.+ ..+..+.+++++..++.+
T Consensus 257 ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~-----s~i~~fDiSsn~~alafg 330 (1118)
T KOG1275|consen 257 RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNG-----SGISAFDISSNGDALAFG 330 (1118)
T ss_pred hccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCC-----CcceeEEecCCCceEEEe
Confidence 666555444443 55678884 45788889999999999443211101111101111 459999999999999998
Q ss_pred -eCCcEEEEEC
Q 003871 656 -HEGQIDVYEA 665 (790)
Q Consensus 656 -~dg~I~iwd~ 665 (790)
.+|.|.+|--
T Consensus 331 d~~g~v~~wa~ 341 (1118)
T KOG1275|consen 331 DHEGHVNLWAD 341 (1118)
T ss_pred cccCcEeeecC
Confidence 8999999973
No 347
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.00088 Score=72.79 Aligned_cols=183 Identities=13% Similarity=0.067 Sum_probs=105.0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC-CC
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TA 463 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~-dg 463 (790)
...+|+ ||++.++......+....+.+++++. ......+.+ .+.-..-+|+|||++|+.+.. ||
T Consensus 196 ~~p~ws-------~~~~~~~y~~f~~~~~~~i~~~~l~~---g~~~~i~~~-----~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 196 LTPAWS-------PDGKKLAYVSFELGGCPRIYYLDLNT---GKRPVILNF-----NGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred eccccC-------cCCCceEEEEEecCCCceEEEEeccC---Cccceeecc-----CCccCCccCCCCCCEEEEEECCCC
Confidence 677888 99998844333333335688888874 222222222 233445579999998887766 66
Q ss_pred cEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEcC
Q 003871 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFAN 543 (790)
Q Consensus 464 ~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~ 543 (790)
...+| ++|+.++. ...+..
T Consensus 261 ~~~iy------------------------------------------------------------~~dl~~~~-~~~Lt~ 279 (425)
T COG0823 261 SPDIY------------------------------------------------------------LMDLDGKN-LPRLTN 279 (425)
T ss_pred CccEE------------------------------------------------------------EEcCCCCc-ceeccc
Confidence 55544 33333332 222332
Q ss_pred CCCCeEEEEEcCCC-eEEEE-eCCC--cEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCC-Cc--EEEEECC
Q 003871 544 PPPIATYFILLPQD-LFAFG-FDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-AQ--LCVWDAV 616 (790)
Q Consensus 544 ~~~~v~~l~~s~~g-~l~sg-s~dg--~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d-g~--I~vwd~~ 616 (790)
..+.-+.-.|+||| .++-. +..| .|.++|.+.+.. ..+....+.-..-.|+|||++++..+.. |. |.+.|+.
T Consensus 280 ~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 280 GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 22222366899999 55444 4444 577888776654 3333333333377899999999987753 43 6666666
Q ss_pred CCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE
Q 003871 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (790)
Q Consensus 617 ~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~ 654 (790)
++.. ++.+... .....-.|.|+++.+..
T Consensus 359 ~~~~-----~~~lt~~-----~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 359 SGGK-----IRILTST-----YLNESPSWAPNGRMIMF 386 (425)
T ss_pred CCCc-----EEEcccc-----ccCCCCCcCCCCceEEE
Confidence 5432 2211111 13345677888888776
No 348
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.82 E-value=0.043 Score=61.98 Aligned_cols=245 Identities=16% Similarity=0.130 Sum_probs=138.8
Q ss_pred CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeE-EEEecCcEEEEec-------CC
Q 003871 454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-------GG 525 (790)
Q Consensus 454 ~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~-~l~~s~~~l~s~s-------dg 525 (790)
..++.++.|+.+.-.|..+++. +|+....... ....+. .....+..++.+. +|
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~------------~W~~~~~~~~-------~~~~~tssP~v~~g~Vivg~~~~~~~~~G 181 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKV------------VWSKKNGDYK-------AGYTITAAPLVVKGKVITGISGGEFGVRG 181 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCE------------Eeeccccccc-------ccccccCCcEEECCEEEEeecccccCCCc
Confidence 4577788889999888887665 5654322110 001111 1112233444432 57
Q ss_pred eEEEEECCCCcEEEEEcCCCC-------------------------------Ce-EEEEEcCCC-eEEEEeCC-----C-
Q 003871 526 KISIFSLETFQTLATFANPPP-------------------------------IA-TYFILLPQD-LFAFGFDD-----S- 566 (790)
Q Consensus 526 ~I~vwd~~~~~~~~~~~~~~~-------------------------------~v-~~l~~s~~g-~l~sgs~d-----g- 566 (790)
.|..+|.++|+.+.++..-.. .+ ..+++.|.. +++.+..+ +
T Consensus 182 ~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~ 261 (527)
T TIGR03075 182 YVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSH 261 (527)
T ss_pred EEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCC
Confidence 899999999998877642111 11 133566655 55554411 2
Q ss_pred ----------cEEEEeCCCCceEEEEcCCCCCE---------EEEEEeCCCC---EEEEEeCCCcEEEEECCCCceeece
Q 003871 567 ----------SILVHCPCTKKTKAKLKGHQNRI---------TCLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLCSK 624 (790)
Q Consensus 567 ----------~I~iwd~~~~~~~~~l~~h~~~v---------~~l~~spdg~---~l~s~s~dg~I~vwd~~~~~~~~~~ 624 (790)
+|.-.|++||+..-.++.....+ .-+....+|+ .++.+..+|.+.+.|-++|+.+...
T Consensus 262 ~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~ 341 (527)
T TIGR03075 262 LRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAE 341 (527)
T ss_pred CCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccc
Confidence 67778999999877665422111 1122334666 6789999999999999998864211
Q ss_pred eee---ee------ccCC---------------C-----C-CCC--CeEEEEEeCCCCEEEEE-eC--------------
Q 003871 625 FLH---SF------QTGL---------------V-----P-ETT--IVNHIQFHPDQIHLLSI-HE-------------- 657 (790)
Q Consensus 625 ~l~---~~------~~~~---------------~-----~-~~~--~v~~i~~sp~~~~l~~~-~d-------------- 657 (790)
+.. .. ..+. . | ..+ .-..++++|+..++++. .+
T Consensus 342 ~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~ 421 (527)
T TIGR03075 342 PFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKK 421 (527)
T ss_pred cccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCC
Confidence 110 00 0000 0 0 000 01125677766655541 11
Q ss_pred -------------------CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 003871 658 -------------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 658 -------------------g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~ 718 (790)
|.+.-+|+.+++..-+... ..+...-...-.+..++.++.||.++.+|.++|+.+..+
T Consensus 422 g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~---~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 422 GAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKE---DFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred CCceeccccccCCCCCCCceeEEEEeCCCCceeeEecC---CCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence 3477778888876654432 111111112235567778888999999999999998877
Q ss_pred cc
Q 003871 719 NL 720 (790)
Q Consensus 719 ~~ 720 (790)
..
T Consensus 499 ~~ 500 (527)
T TIGR03075 499 KT 500 (527)
T ss_pred eC
Confidence 53
No 349
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.82 E-value=0.011 Score=59.15 Aligned_cols=213 Identities=14% Similarity=0.067 Sum_probs=114.9
Q ss_pred EEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 003871 540 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616 (790)
Q Consensus 540 ~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h-~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 616 (790)
.+.+-...++.++|.|+. ++++....+.|..++.. |+.++.+.-. .+..-+|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 445556679999999986 77777888899999974 7887776533 3568899998888777766668999999984
Q ss_pred CCc-eeeceeeeeeccCC-CCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCC---Cceeee-----ec-CCCCCCCeE
Q 003871 617 GWK-KLCSKFLHSFQTGL-VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT---LNHTSQ-----LV-PDKMDLPIT 684 (790)
Q Consensus 617 ~~~-~~~~~~l~~~~~~~-~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~---~~~~~~-----~~-~~~h~~~v~ 684 (790)
... .......+.+.-+. ......+-.++|+|.+..|++. ...-..+|.+.. ...+.. +. .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 11111111121110 0111568999999987777765 444455555542 111111 11 011245688
Q ss_pred EEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcc---cccceEEEEEecCCCCEEEEEeCCCcEEEE
Q 003871 685 YATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS---LELYPLVIAAHPLEPNRIALGLTNGRVHVI 760 (790)
Q Consensus 685 ~l~~s~d-g~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~---~~v~~~~v~~sp~d~~~las~s~Dg~i~iW 760 (790)
+++++|. |++++.+..+..|..+| .+|+.+..+.... |.++ .--.+=.++|.| +|++.++ ++-+..+++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~----g~~gl~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDR----GFHGLSKDIPQPEGIAFDP-DGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-ST----TGGG-SS---SEEEEEE-T-T--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCC----cccCcccccCCccEEEECC-CCCEEEE-cCCceEEEe
Confidence 9999986 56777777889999999 6777776665332 2111 111244899999 7865554 566666554
No 350
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.79 E-value=3.4e-05 Score=47.31 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHhc
Q 003871 14 THLITLIMKFLEEENFKESLQALEQES 40 (790)
Q Consensus 14 ~e~~~li~q~l~~~g~~~s~~~l~~Es 40 (790)
+++.+||.+||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 478999999999999999999999997
No 351
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00085 Score=68.39 Aligned_cols=92 Identities=12% Similarity=0.112 Sum_probs=76.6
Q ss_pred EEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCC-CEEEE
Q 003871 527 ISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVS 603 (790)
Q Consensus 527 I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg-~~l~s 603 (790)
+++.+..+.+...-+..+...|..++|+|.. ++..++.+..|.|.|+++...+..+..| ..+++++|.-|. ++|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 5666666666666666778889999999988 7889999999999999999888888877 789999998865 56778
Q ss_pred EeCCCcEEEEECCCCc
Q 003871 604 SGADAQLCVWDAVGWK 619 (790)
Q Consensus 604 ~s~dg~I~vwd~~~~~ 619 (790)
|...|.|.+||++..+
T Consensus 254 Gl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPE 269 (463)
T ss_pred eccCceEEEEEccCCC
Confidence 8889999999999743
No 352
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.011 Score=61.18 Aligned_cols=218 Identities=12% Similarity=0.056 Sum_probs=127.2
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEecC
Q 003871 448 IYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG 524 (790)
Q Consensus 448 ~~spdg~~l~s~~~-dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~sd 524 (790)
.|.++...|+.+.- .+.|.-|+..++.. ... .+.+.+.++..- +..|+++..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~---------------------~~~----~~p~~~~~~~~~d~~g~Lv~~~~ 85 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK---------------------RVF----PSPGGFSSGALIDAGGRLIACEH 85 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce---------------------EEE----ECCCCcccceeecCCCeEEEEcc
Confidence 36677765555544 66777666553322 111 123333444433 445555543
Q ss_pred CeEEEEECCCCcEEEEEcC-----CCCCeEEEEEcCCCeEEEEeCC------------CcEEEEeCCCCceEEEEcCCCC
Q 003871 525 GKISIFSLETFQTLATFAN-----PPPIATYFILLPQDLFAFGFDD------------SSILVHCPCTKKTKAKLKGHQN 587 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~-----~~~~v~~l~~s~~g~l~sgs~d------------g~I~iwd~~~~~~~~~l~~h~~ 587 (790)
.+.+++.+++..+..+.. .....+.+.+.|+|.+..+... |.|+.+|. .+..++.+..+-.
T Consensus 86 -g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~ 163 (307)
T COG3386 86 -GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT 163 (307)
T ss_pred -ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE
Confidence 344566565555333321 1234578889999933333322 34555554 4666666766666
Q ss_pred CEEEEEEeCCCCEEEEEeC-CCcEEEEECCC--CceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eC-CcEEE
Q 003871 588 RITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-GQIDV 662 (790)
Q Consensus 588 ~v~~l~~spdg~~l~s~s~-dg~I~vwd~~~--~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d-g~I~i 662 (790)
.-+.++||||++.+..+.. .+.|.-|++.. +......... ...... +..-.++...+|.+-+++ .+ +.|.+
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~-~~~~~~---G~PDG~~vDadG~lw~~a~~~g~~v~~ 239 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFV-DFDEEP---GLPDGMAVDADGNLWVAAVWGGGRVVR 239 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEE-EccCCC---CCCCceEEeCCCCEEEecccCCceEEE
Confidence 7789999999988777665 47788887762 2221111111 111111 456678888888887654 33 38999
Q ss_pred EECCCCceeeeecCCCCCCCeEEEEEe-cCCCEEEEEE
Q 003871 663 YEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSC 699 (790)
Q Consensus 663 wd~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~sgs 699 (790)
|+.. |+.+..+..+ ...+++++|- |+.+.|+..+
T Consensus 240 ~~pd-G~l~~~i~lP--~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 240 FNPD-GKLLGEIKLP--VKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ECCC-CcEEEEEECC--CCCCccceEeCCCcCEEEEEe
Confidence 9998 9998888653 3778888887 5556555443
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.018 Score=62.96 Aligned_cols=166 Identities=12% Similarity=0.091 Sum_probs=89.1
Q ss_pred CCeEEEEec-C-cEEEEecCCeEEEEECCCCcEEEEEc---------CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC
Q 003871 507 DSISCFALR-G-SHLFSASGGKISIFSLETFQTLATFA---------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPC 574 (790)
Q Consensus 507 ~~V~~l~~s-~-~~l~s~sdg~I~vwd~~~~~~~~~~~---------~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~ 574 (790)
+.|.++.|+ . ++++...||.+++||+. |+. .+. -....+....+..+| .+.+ .++.+++.+-.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCc
Confidence 789999999 5 45555559999999986 444 221 111122223344466 4444 34445444322
Q ss_pred CCc-eEEEE---cC-----CCCC-EEE-EEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEE
Q 003871 575 TKK-TKAKL---KG-----HQNR-ITC-LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 643 (790)
Q Consensus 575 ~~~-~~~~l---~~-----h~~~-v~~-l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i 643 (790)
... ..+.+ .+ |... ... ..++.+....+....++.+.+.+-...+ . +.. . +++..+
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~-----~---i~~-~----~~i~~i 222 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK-----Q---IDS-D----GPIIKI 222 (410)
T ss_pred cccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc-----c---ccC-C----CCeEEE
Confidence 211 11111 11 0000 000 2234444444444555555544433210 1 111 1 579999
Q ss_pred EEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecC
Q 003871 644 QFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 691 (790)
Q Consensus 644 ~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d 691 (790)
++||+|+++|. ..+|.+.+.+..-.+....+... .......+.|.-+
T Consensus 223 avSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 223 AVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGN 270 (410)
T ss_pred EECCCCCEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECC
Confidence 99999999998 57899999887666666665443 1345667777644
No 354
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.0011 Score=73.46 Aligned_cols=70 Identities=20% Similarity=0.358 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
+++||+ |..-.| +.|-.-|.+.+|... ....+++. ..|..+|..+.|||+|..++++..-|.
T Consensus 63 tSLCWH-------pe~~vL----a~gwe~g~~~v~~~~----~~e~htv~---~th~a~i~~l~wS~~G~~l~t~d~~g~ 124 (1416)
T KOG3617|consen 63 TSLCWH-------PEEFVL----AQGWEMGVSDVQKTN----TTETHTVV---ETHPAPIQGLDWSHDGTVLMTLDNPGS 124 (1416)
T ss_pred hhhccC-------hHHHHH----hhccccceeEEEecC----Cceeeeec---cCCCCCceeEEecCCCCeEEEcCCCce
Confidence 789999 877777 999999999999987 34555544 258999999999999999999999999
Q ss_pred EEEEecCC
Q 003871 465 HKLWKWQS 472 (790)
Q Consensus 465 i~vw~~~~ 472 (790)
+.+|....
T Consensus 125 v~lwr~d~ 132 (1416)
T KOG3617|consen 125 VHLWRYDV 132 (1416)
T ss_pred eEEEEeee
Confidence 99998763
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.71 E-value=0.023 Score=56.78 Aligned_cols=198 Identities=15% Similarity=0.097 Sum_probs=110.6
Q ss_pred CCCCCeEEEEec--CcEEEEec--CCeEEEEECCCCcEEEEEcCC-CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc
Q 003871 504 DPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 577 (790)
Q Consensus 504 ~~~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~ 577 (790)
+-...+..++|+ .+.|++.. .+.|..++.+ |+.++++.-. .+..-.+++..++ ++++--.++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 455669999999 45555544 5888888874 8888887533 3557888998888 66665568899999884321
Q ss_pred ------eEEEEc-----CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---Cceeeceeeeeec--cCCCCCCCCeE
Q 003871 578 ------TKAKLK-----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG---WKKLCSKFLHSFQ--TGLVPETTIVN 641 (790)
Q Consensus 578 ------~~~~l~-----~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~---~~~~~~~~l~~~~--~~~~~~~~~v~ 641 (790)
....+. .+...+-.++|+|.++.|+.+-...-..+|.+.. ...........+. .... ..+.
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~S 174 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV---RDLS 174 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S---S---
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee---cccc
Confidence 112221 2445689999999888887777776677776654 1111000000011 1111 4678
Q ss_pred EEEEeCCCCEEEE-E-eCCcEEEEECCCCceeeeecCCC--C-----CCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 003871 642 HIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK--M-----DLPITYATYSCDGKCIYVSCKSGHVKVF 707 (790)
Q Consensus 642 ~i~~sp~~~~l~~-~-~dg~I~iwd~~~~~~~~~~~~~~--h-----~~~v~~l~~s~dg~~l~sgs~dg~i~vw 707 (790)
+++++|....|.+ + .+..|..+| .+|+.+..+.... | -...-.++|.++|++. ..++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCceEEEe
Confidence 8999998766655 6 677799999 4688766554321 1 1347789999999644 44577777665
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.68 E-value=0.031 Score=61.08 Aligned_cols=183 Identities=15% Similarity=0.088 Sum_probs=100.4
Q ss_pred eEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEE-------cCCCCCEEEEEEeCCC
Q 003871 526 KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL-------KGHQNRITCLAYSLSL 598 (790)
Q Consensus 526 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l-------~~h~~~v~~l~~spdg 598 (790)
.|++|+.. |+.+.++.-..+.+.++.|+.+..|++-..||.+++||+. |+....+ .-....+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence 59999876 7777776644588999999886666667789999999986 4331111 1111222222333355
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCC-C-CCCeEE-EEEeCCCCEEEE-EeCCcEEEEECCCCceeeee
Q 003871 599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP-E-TTIVNH-IQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 674 (790)
Q Consensus 599 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~-~-~~~v~~-i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~ 674 (790)
++.-..++.+.+.+--.... ..+.+..++..... + ...... ..++.+....+. ..++.+.+.+-...+. +
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPV-KLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred --EEEECCCCeEEEEeCccccc-hhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 33333445544432222110 00111111111100 0 001111 234444444333 4555566554432211 2
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003871 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 675 ~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~ 719 (790)
. ..+++..+++||+|+++|.-..+|.+.+...+-.+....+.
T Consensus 214 ~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 214 D---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred c---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 1 24689999999999999999999999999877666665554
No 357
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.65 E-value=0.081 Score=54.52 Aligned_cols=228 Identities=14% Similarity=0.097 Sum_probs=133.3
Q ss_pred CeEEEEECCCCcEEEEEcCCCC-------CeEEEEEcCCC-eEEE--EeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEE
Q 003871 525 GKISIFSLETFQTLATFANPPP-------IATYFILLPQD-LFAF--GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 594 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~-------~v~~l~~s~~g-~l~s--gs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~ 594 (790)
..|.+||..+-.....+.-+.. ....++++.|| ++++ .+-..+|.+.|+..++.+..+.. .+ ...+ +
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG-C~~i-y 143 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG-CWLI-Y 143 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TS-EEEE-E
T ss_pred eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CC-EEEE-E
Confidence 3699999999887776542221 12346788888 4443 44556899999998888877752 22 1222 2
Q ss_pred eC-CCCEEEEEeCCCcEEEEECCC-CceeeceeeeeeccCCCCCCCCeEEEEEeCC-CCEEEEEeCCcEEEEECCCCce-
Q 003871 595 SL-SLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNH- 670 (790)
Q Consensus 595 sp-dg~~l~s~s~dg~I~vwd~~~-~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~-~~~l~~~~dg~I~iwd~~~~~~- 670 (790)
| ..+.+.+-+.||++.-..+.. |+.. .+.-.-+..... ..+..-++... +.++..+.+|.|+-.|+.....
T Consensus 144 -P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~d---p~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~ 218 (342)
T PF06433_consen 144 -PSGNRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDD---PLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK 218 (342)
T ss_dssp -EEETTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS----B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE
T ss_pred -ecCCCceEEEecCCceEEEEECCCCCEe-EeeccccCCCCc---ccccccceECCCCeEEEEecCCEEEEEeccCCccc
Confidence 2 224577888899999888873 4432 222121111221 12234455544 4566678899999988865432
Q ss_pred -eeeecCCC--------CCCCeEEEEEecCCCEEEEEEc---C-------CeEEEEECCCCeEEEEeccccccCCCCccc
Q 003871 671 -TSQLVPDK--------MDLPITYATYSCDGKCIYVSCK---S-------GHVKVFDTSTLELRCQINLTAYAQPGTISL 731 (790)
Q Consensus 671 -~~~~~~~~--------h~~~v~~l~~s~dg~~l~sgs~---d-------g~i~vwd~~~~~~~~~~~~~~~~~~gh~~~ 731 (790)
...+.... ..+.-.-+++++..+.|+.--. + ..|.++|+.+++.+.++.. ..
T Consensus 219 ~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---------~~ 289 (342)
T PF06433_consen 219 FGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---------EH 289 (342)
T ss_dssp EEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---------EE
T ss_pred ccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---------CC
Confidence 12221100 0123345778876655554221 1 2488899999999998864 22
Q ss_pred ccceEEEEEecCCCCEEEEEe-CCCcEEEEecCCCcccccc
Q 003871 732 ELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLESEVEWGK 771 (790)
Q Consensus 732 ~v~~~~v~~sp~d~~~las~s-~Dg~i~iW~~~~~~~~w~~ 771 (790)
.+. +++.+.++..+|++.+ .++.+.+||..+|+..-..
T Consensus 290 ~~~--Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 290 PID--SIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EES--EEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred ccc--eEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 455 7777885666776654 5799999999999866443
No 358
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.64 E-value=4.8e-05 Score=81.59 Aligned_cols=196 Identities=15% Similarity=0.181 Sum_probs=128.6
Q ss_pred CCCCeEEEEec---C-cEEEEec-CCeEEEEECCCCcEE--EEEcCCCCCeEEEEEcCCC--eEEEEe----CCCcEEEE
Q 003871 505 PKDSISCFALR---G-SHLFSAS-GGKISIFSLETFQTL--ATFANPPPIATYFILLPQD--LFAFGF----DDSSILVH 571 (790)
Q Consensus 505 ~~~~V~~l~~s---~-~~l~s~s-dg~I~vwd~~~~~~~--~~~~~~~~~v~~l~~s~~g--~l~sgs----~dg~I~iw 571 (790)
....+.|+++. + ..+++|. +|.|.+-.++....- ....++....++++|++-+ .||+|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 45567777777 3 3466677 899988877653322 2334567788999999987 777763 35589999
Q ss_pred eCCCC--ceEE--EEcC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEe
Q 003871 572 CPCTK--KTKA--KLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 646 (790)
Q Consensus 572 d~~~~--~~~~--~l~~-h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~s 646 (790)
|+.++ .+.. .|.+ ......+++|-.+.+.+.+|...+.+.++|++..-. ....+. . ..+..+..+
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svn---T------k~vqG~tVd 204 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVN---T------KYVQGITVD 204 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhh---h------hhcccceec
Confidence 99876 2221 2222 334566888888888999999999999999984110 011111 1 256678888
Q ss_pred C-CCCEEEEEeCCcEEEEEC-CCC-ceeeeecCCC--CCCCeEEEEEecCCC-EEEEEEc-CCeEEEEECC
Q 003871 647 P-DQIHLLSIHEGQIDVYEA-PTL-NHTSQLVPDK--MDLPITYATYSCDGK-CIYVSCK-SGHVKVFDTS 710 (790)
Q Consensus 647 p-~~~~l~~~~dg~I~iwd~-~~~-~~~~~~~~~~--h~~~v~~l~~s~dg~-~l~sgs~-dg~i~vwd~~ 710 (790)
| .+.+++...||.|.+||. ++- .++..+.... ....+..++|+|... .+++... .++|+++|+.
T Consensus 205 p~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 205 PFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 8 778888888999999993 322 2333332211 123489999998543 3444444 5889999985
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.023 Score=61.66 Aligned_cols=203 Identities=17% Similarity=0.132 Sum_probs=140.5
Q ss_pred eEEEEec--CcEEEEec--CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeC---CCcEEEEeCCCCceEE
Q 003871 509 ISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKA 580 (790)
Q Consensus 509 V~~l~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~---dg~I~iwd~~~~~~~~ 580 (790)
...++.+ +..+.... ++.|.+.|..+.+......... ....++++|++ .+.++.. ++++.+.|..+++...
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 3455665 55444333 6899999988777766654322 45689999999 5555544 6899999999888877
Q ss_pred EEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--e-
Q 003871 581 KLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H- 656 (790)
Q Consensus 581 ~l~~h~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~- 656 (790)
....-..+ ..++++|+|+.++.+. .++.|.+.|..+..............+ .....+.++|+|.++.+. .
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-----~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-----TGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-----CCCceEEECCCCCEEEEEeccC
Confidence 75433334 8899999999766555 788999999877433210000001111 245678999999987773 2
Q ss_pred -CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-CeEEEEECCCCeEEEEec
Q 003871 657 -EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-GHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 657 -dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d-g~i~vwd~~~~~~~~~~~ 719 (790)
++.+...|..++.....-...... ....+.++|+|+++++.... +.+.+-|..+........
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 268999999888776652222223 57788999999999887554 899999999988777654
No 360
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=0.018 Score=56.62 Aligned_cols=234 Identities=14% Similarity=0.053 Sum_probs=136.0
Q ss_pred EEEec---CcEEEEec--CCeEEEEECCCCcEEEEEcCCCCC--eEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCC-
Q 003871 511 CFALR---GSHLFSAS--GGKISIFSLETFQTLATFANPPPI--ATYFILLPQD-LFAFGFDD-----SSILVHCPCTK- 576 (790)
Q Consensus 511 ~l~~s---~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~--v~~l~~s~~g-~l~sgs~d-----g~I~iwd~~~~- 576 (790)
.++++ ..-++.+- .....++|..+.+...++...++. .-.-.||||| +|+..-+| |.|-+||.+.+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 45555 34455554 234568888877666655433221 1234689999 66655433 57999998854
Q ss_pred ceEEEEcCCCCCEEEEEEeCCCCEEEEEeC------------------CCcEEEEECCCCceeeceeeeeeccCCCCCCC
Q 003871 577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGA------------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 638 (790)
Q Consensus 577 ~~~~~l~~h~~~v~~l~~spdg~~l~s~s~------------------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~ 638 (790)
+.+..+..|.-....+.+.+||+.++.+.. .-++.+.|..+|..+....+. -...+ -
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp-~~l~~----l 226 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP-ASLRQ----L 226 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc-hhhhh----c
Confidence 456678888878889999999999887643 113445555555544333322 00112 4
Q ss_pred CeEEEEEeCCCCEEEEE-eCCc-----EEEEECCCCceeeeecCCC-----CCCCeEEEEEecCCCEEEEEE-cCCeEEE
Q 003871 639 IVNHIQFHPDQIHLLSI-HEGQ-----IDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSC-KSGHVKV 706 (790)
Q Consensus 639 ~v~~i~~sp~~~~l~~~-~dg~-----I~iwd~~~~~~~~~~~~~~-----h~~~v~~l~~s~dg~~l~sgs-~dg~i~v 706 (790)
.|..++..+||+..+.+ ..|. -.+=-...++.+.-+.... ....|-+++.+.+..+++..+ ..+...+
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 78889999999877764 2221 1111122344433332111 134577888886666665444 4566789
Q ss_pred EECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 707 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 707 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
||..+|..+..-... ... .++- .+.-++..+.+|.+.++.-..
T Consensus 307 ~da~tG~vv~~a~l~----------daa--Gva~---~~~gf~vssg~G~~~~~s~~~ 349 (366)
T COG3490 307 WDAATGAVVSEAALP----------DAA--GVAA---AKGGFAVSSGQGRIIFYSRAA 349 (366)
T ss_pred EEcCCCcEEeccccc----------ccc--ccee---ccCceEEecCCceEEeccccc
Confidence 999999987654321 111 2322 223345556788888875433
No 361
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00034 Score=71.60 Aligned_cols=118 Identities=17% Similarity=0.196 Sum_probs=93.4
Q ss_pred chhHHHHHHHHHHHHhcHHHHHHHHHHhcCCch----------hHHHHHHHHhcCCHHHHHHHhccc-ccccCCccccee
Q 003871 12 TYTHLITLIMKFLEEENFKESLQALEQESKIFF----------NVHRFGEIVMNGEWEKAEKYLSAF-TKLDDSNHSKKM 80 (790)
Q Consensus 12 ~~~e~~~li~q~l~~~g~~~s~~~l~~Esg~~~----------~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~ 80 (790)
+.+.+..+|..++...|..+.+..|-+|||... ++.++-+++..||-.-|++.+..- +.+.++. ..+
T Consensus 115 ~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~--s~L 192 (394)
T KOG2817|consen 115 TSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS--SSL 192 (394)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc--ccH
Confidence 445569999999999999999999999999885 389999999999999999998654 2223221 228
Q ss_pred eehhhhhhHHHHHhcCChH--HHHHHHHhccccccccChhHHHH-HHHHhcccc
Q 003871 81 FFELRKHKYCEALCRHERT--EADSIFRKDLKVFSVSQNRIDCE-LAELLALKD 131 (790)
Q Consensus 81 ~f~l~~q~~lEll~~~~~~--~al~~l~~~l~~~~~~~~~~~~~-l~~~l~~~~ 131 (790)
.|.|..++|++++..|... +||...|+.++|+.......++. +..++.+.+
T Consensus 193 E~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl~~l~~ 246 (394)
T KOG2817|consen 193 EFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSLLYLRN 246 (394)
T ss_pred HHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc
Confidence 8999999999999999988 99999999999995433333443 455555544
No 362
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.073 Score=57.72 Aligned_cols=197 Identities=15% Similarity=0.108 Sum_probs=135.7
Q ss_pred eEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeC---CCcEEEEECCCCceee
Q 003871 548 ATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLC 622 (790)
Q Consensus 548 v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~---dg~I~vwd~~~~~~~~ 622 (790)
-..++.++.+ ..+....++.|.+.|..+.+......--. ....++++|+++.+..+.. ++++.+.|..+++.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~-- 152 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV-- 152 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE--
Confidence 3577888888 44444556899999987776665553222 5678999999988777665 68899999888543
Q ss_pred ceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEECCCCceeeeecC---CCCCCCeEEEEEecCCCEEEE
Q 003871 623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVP---DKMDLPITYATYSCDGKCIYV 697 (790)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~~~~~~~~~~~---~~h~~~v~~l~~s~dg~~l~s 697 (790)
+.+.+.+.. + ..++++|+|..+++. .++.|.+.|..+....+ -.. -.-......+.++|+|++++.
T Consensus 153 ---~~~~~vG~~----P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV 223 (381)
T COG3391 153 ---TATIPVGNT----P-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYV 223 (381)
T ss_pred ---EEEEecCCC----c-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEE
Confidence 332333432 3 889999999988874 68999999987665543 110 011445678999999997776
Q ss_pred EEcC---CeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEe-CCCcEEEEecCCCc
Q 003871 698 SCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLESE 766 (790)
Q Consensus 698 gs~d---g~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s-~Dg~i~iW~~~~~~ 766 (790)
.... +.+...|..++.....-.+. ... .+..+..+| +|..+.... ..+.+.+-|..+..
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~~~--------~~~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDLPV--------GSG-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEecccc--------ccC-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCc
Confidence 5544 59999999998776552211 111 234788899 788877774 34788888877654
No 363
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.56 E-value=0.022 Score=55.17 Aligned_cols=148 Identities=12% Similarity=0.088 Sum_probs=96.9
Q ss_pred EEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeee
Q 003871 551 FILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628 (790)
Q Consensus 551 l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~ 628 (790)
+..-+|. +++.|+..+.+.-.|..+|+.+..-. -..++.+-+.- -|++++.|...|.+++.+.++|.+.....+.
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~- 92 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL- 92 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh-
Confidence 3344555 88999999999999999998764422 12233332222 4678999999999999999998654433322
Q ss_pred eccCCCCCCCCeE-EEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 003871 629 FQTGLVPETTIVN-HIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 706 (790)
Q Consensus 629 ~~~~~~~~~~~v~-~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~v 706 (790)
+.|. .....+++..+.++ +|+..+..|.++..++...+.+ .....+-+..|...-|+.+...|.|.-
T Consensus 93 ---------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcg--G~~f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 93 ---------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG--GGTFVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred ---------hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccC--CceeccceecCCCceEEEEeccceEEE
Confidence 1222 24557788889885 9999999999998888776543 333444556663334444455555544
Q ss_pred EECCCC
Q 003871 707 FDTSTL 712 (790)
Q Consensus 707 wd~~~~ 712 (790)
-..+++
T Consensus 162 vt~~~~ 167 (354)
T KOG4649|consen 162 VTKNPY 167 (354)
T ss_pred EccCCC
Confidence 444444
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.53 E-value=0.013 Score=66.51 Aligned_cols=211 Identities=13% Similarity=0.102 Sum_probs=110.9
Q ss_pred CCeEEEEEcCCC-eEEEEe------CCC--cEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCC-CcEEEEEC
Q 003871 546 PIATYFILLPQD-LFAFGF------DDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-AQLCVWDA 615 (790)
Q Consensus 546 ~~v~~l~~s~~g-~l~sgs------~dg--~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d-g~I~vwd~ 615 (790)
..+.+.+++|+| .++... .|. .+.+++.. +.......+. ..+...|+|||+.+++.+.. ..+++.+-
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 457889999999 554443 233 56666653 3332223332 37788999999988877643 22333322
Q ss_pred CCCceeeceeeee--eccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEE---EECCCCce-e---eeecCCCCCCCeEEE
Q 003871 616 VGWKKLCSKFLHS--FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV---YEAPTLNH-T---SQLVPDKMDLPITYA 686 (790)
Q Consensus 616 ~~~~~~~~~~l~~--~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~i---wd~~~~~~-~---~~~~~~~h~~~v~~l 686 (790)
..........+.. ...... +.|..+.|||||..++.-.++.|++ -....|.. + ..+.. .-...+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~~~~---g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~-~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVASRVP---GPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGP-GLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhhccC---CCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeec-ccCCccccc
Confidence 1110100001100 000111 5799999999999999865678777 45444541 1 11211 113346889
Q ss_pred EEecCCCEEEEEEcCCeEEEE--ECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 687 TYSCDGKCIYVSCKSGHVKVF--DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 687 ~~s~dg~~l~sgs~dg~i~vw--d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
.|..++.++ .+..++...+| ++..... ..+. . +.....+. +++-+| + .++.+..+|.+.+=.-.+
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~-~~~~-~-----~n~~~~v~--~vaa~~-~--~iyv~~~~g~~~l~~~~~ 569 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLDGSNS-DALP-S-----RNLSAPVV--AVAASP-S--TVYVTDARAVLQLPNSDS 569 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecCCccc-cccC-C-----CCccCceE--EEecCC-c--eEEEEcCCceEEecCCCC
Confidence 999999855 44544444444 4443221 1111 1 10122333 666666 2 355556676444443344
Q ss_pred CccccccCCCCC
Q 003871 765 SEVEWGKLPFTD 776 (790)
Q Consensus 765 ~~~~w~~~~~~~ 776 (790)
....|.-.+...
T Consensus 570 ~~~~W~ev~~l~ 581 (591)
T PRK13616 570 GDQYWREVPGLM 581 (591)
T ss_pred CCCCceECcccc
Confidence 566787655433
No 365
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.48 E-value=0.024 Score=60.06 Aligned_cols=216 Identities=18% Similarity=0.161 Sum_probs=120.4
Q ss_pred CeEEEEECCCCcEEEEEcCC-CCCeEEE---EEcCC----C-eEEEEeC----------CCcEEEEeCCCC----ceEEE
Q 003871 525 GKISIFSLETFQTLATFANP-PPIATYF---ILLPQ----D-LFAFGFD----------DSSILVHCPCTK----KTKAK 581 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~-~~~v~~l---~~s~~----g-~l~sgs~----------dg~I~iwd~~~~----~~~~~ 581 (790)
..|++.|..+.+.+.++.-. ...+.++ .+..+ . ++++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36788888888877766522 2234443 33332 4 7777653 288999999874 12222
Q ss_pred E--cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eC
Q 003871 582 L--KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK-KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 657 (790)
Q Consensus 582 l--~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~-~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d 657 (790)
+ ....++|++++-- +++ ++.+. .+.|.+|++...+ ........ .. ..+.++... +.++++| ..
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~----~~----~~i~sl~~~--~~~I~vgD~~ 148 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYD----SP----FYITSLSVF--KNYILVGDAM 148 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-----BS----SSEEEEEEE--TTEEEEEESS
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheec----ce----EEEEEEecc--ccEEEEEEcc
Confidence 2 2256889998766 444 44444 4799999998855 22211111 11 356666555 4588887 45
Q ss_pred CcEEEEECCC-CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC-------C--eEEEEeccccccCCC
Q 003871 658 GQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-------L--ELRCQINLTAYAQPG 727 (790)
Q Consensus 658 g~I~iwd~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~-------~--~~~~~~~~~~~~~~g 727 (790)
..+.++.... ...+..+........++++.|-++++.++++..+|.+.++.... + ++......
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f------- 221 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF------- 221 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE-------
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEE-------
Confidence 5666664332 23233332222356688999987778999999999999998763 2 22222221
Q ss_pred CcccccceEEE---EEecC--CC-----CEEEEEeCCCcEEEEec
Q 003871 728 TISLELYPLVI---AAHPL--EP-----NRIALGLTNGRVHVIEP 762 (790)
Q Consensus 728 h~~~~v~~~~v---~~sp~--d~-----~~las~s~Dg~i~iW~~ 762 (790)
|.+..|. ++ +..|. +. ..++.++.+|.|.+.-+
T Consensus 222 ~lg~~v~--~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 222 HLGDIVN--SFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp E-SS-EE--EEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred ECCCccc--eEEEEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 1233444 44 43441 11 24788889999986555
No 366
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.0015 Score=71.44 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=96.5
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE-EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeece
Q 003871 547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 624 (790)
Q Consensus 547 ~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~-~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~ 624 (790)
.|.--+++..+ +++.|+.-|.+++|+...+.... ...+-.+.+.....+++..++|.|+..|.|.++-+..+....
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~-- 112 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD-- 112 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc--
Confidence 34334455566 99999999999999987665432 223344566777889998899999999999999887733221
Q ss_pred eeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCc----eeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 003871 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDGKCIYVSC 699 (790)
Q Consensus 625 ~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~----~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 699 (790)
... +...+..|...|++++|++++..+++| +.|+|..-.+.+.. ..+.+.. -...|..+.+. ++.+|++..
T Consensus 113 ~~~-~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~--~ds~IVQlD~~-q~~LLVStl 188 (726)
T KOG3621|consen 113 LDY-VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILS--EDSEIVQLDYL-QSYLLVSTL 188 (726)
T ss_pred cee-eccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeec--cCcceEEeecc-cceehHhhh
Confidence 122 222222233799999999999999998 67888887776511 1111111 25667766664 344444433
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.31 E-value=0.16 Score=52.40 Aligned_cols=225 Identities=12% Similarity=0.073 Sum_probs=122.9
Q ss_pred CcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEE-------------
Q 003871 516 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK------------- 581 (790)
Q Consensus 516 ~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~------------- 581 (790)
++.|+.|.++.+.+++........... +...|..+...|+- .+++-+ |+.++++++..-.....
T Consensus 7 ~~~L~vGt~~Gl~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 7 GDRLLVGTEDGLYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred CCEEEEEECCCEEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccc
Confidence 677888884338999983332222222 22339999988876 444433 59999999875433221
Q ss_pred -EcCCCCCEEEEE--EeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCC
Q 003871 582 -LKGHQNRITCLA--YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEG 658 (790)
Q Consensus 582 -l~~h~~~v~~l~--~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg 658 (790)
-......+...+ -.+.+...+.....++|.+|............++.+.-. ..+.+++|. +..+++|..+
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-----~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-----DPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-----CCcEEEEEe--CCEEEEEeCC
Confidence 011223444444 122333333444456899888776311100122222222 478899998 5578888777
Q ss_pred cEEEEECCCCceeeeecCCCC----------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE--EeccccccCC
Q 003871 659 QIDVYEAPTLNHTSQLVPDKM----------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC--QINLTAYAQP 726 (790)
Q Consensus 659 ~I~iwd~~~~~~~~~~~~~~h----------~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~--~~~~~~~~~~ 726 (790)
...+.|+.++.....+..... ..++..+.. +++.+|++- |..-.+.|.. |+... .+...
T Consensus 158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W~----- 228 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKN-GEPSRKSTIQWS----- 228 (275)
T ss_pred ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCC-CCcCcccEEEcC-----
Confidence 799999987766444322111 123333333 345666653 3333344443 33222 22211
Q ss_pred CCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccc
Q 003871 727 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 727 gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
. . +.++++.. .+|+..+. +.|-||++.+++..
T Consensus 229 ---~-~--p~~~~~~~---pyli~~~~-~~iEV~~~~~~~lv 260 (275)
T PF00780_consen 229 ---S-A--PQSVAYSS---PYLIAFSS-NSIEVRSLETGELV 260 (275)
T ss_pred ---C-c--hhEEEEEC---CEEEEECC-CEEEEEECcCCcEE
Confidence 1 2 33666644 57777665 45999999999643
No 368
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.31 E-value=0.065 Score=53.31 Aligned_cols=199 Identities=13% Similarity=0.034 Sum_probs=117.2
Q ss_pred cEEEEEcCCCC--CeEEEEEcCCC-eEEEEeCCC--cEEEEeCCCCceEEEEcCC-CCCEEEEEEeCCCCEEEEEeCCCc
Q 003871 536 QTLATFANPPP--IATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQ 609 (790)
Q Consensus 536 ~~~~~~~~~~~--~v~~l~~s~~g-~l~sgs~dg--~I~iwd~~~~~~~~~l~~h-~~~v~~l~~spdg~~l~s~s~dg~ 609 (790)
+.+.++. |+. -...+.|..+| ++-+.+.-| .|+.+|+.+|+......-. ...--.++...| +.....=.++.
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSE
T ss_pred EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCe
Confidence 3455554 333 23567787788 666666666 7999999999877654322 222234444433 34444456889
Q ss_pred EEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCC---CCeEE
Q 003871 610 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITY 685 (790)
Q Consensus 610 I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~---~~v~~ 685 (790)
..+||..+.+........ +.=+.++ .|+..|+.+ ....++.+|..+.+..+++...... ..++-
T Consensus 112 ~f~yd~~tl~~~~~~~y~----------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNE 179 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYP----------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNE 179 (264)
T ss_dssp EEEEETTTTEEEEEEE-S----------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEE
T ss_pred EEEEccccceEEEEEecC----------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEe
Confidence 999999985543322221 2345555 456666665 6778999999888877766543223 34556
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCC----C-C--cccccceEEEEEecCCCCEEEEE
Q 003871 686 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP----G-T--ISLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 686 l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~----g-h--~~~~v~~~~v~~sp~d~~~las~ 751 (790)
+.|- +|...|=.=....|...|..+|+....+......+. . + ..+-.+ .+||+|..+.+++||
T Consensus 180 LE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLN--GIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 180 LEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLN--GIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EE--EEEEETTTTEEEEEE
T ss_pred EEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeE--eEeEeCCCCEEEEEe
Confidence 7775 666555555677889999999999988765433221 0 0 022344 999999666666776
No 369
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.23 E-value=0.27 Score=50.74 Aligned_cols=238 Identities=12% Similarity=0.085 Sum_probs=137.0
Q ss_pred CCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 003871 399 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 478 (790)
Q Consensus 399 dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g 478 (790)
.++.+ +.|..+| +.+++... .....++. +...|..+...|+-+.+++-+ |+.+.++++..-.....
T Consensus 6 ~~~~L----~vGt~~G-l~~~~~~~---~~~~~~i~-----~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~ 71 (275)
T PF00780_consen 6 WGDRL----LVGTEDG-LYVYDLSD---PSKPTRIL-----KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVST 71 (275)
T ss_pred CCCEE----EEEECCC-EEEEEecC---CccceeEe-----ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccc
Confidence 46777 8898888 89998832 23333222 244599999999988777776 49999999886443100
Q ss_pred ccccccccccccCCCceeeeecccCCCCCCeEEEE---ec--CcEEEEecCCeEEEEECCCC-----cEEEEEcCCCCCe
Q 003871 479 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA---LR--GSHLFSASGGKISIFSLETF-----QTLATFANPPPIA 548 (790)
Q Consensus 479 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~---~s--~~~l~s~sdg~I~vwd~~~~-----~~~~~~~~~~~~v 548 (790)
.... ....+....... .....+..++ -. ...++++....|.+|..... +..+.+.- ...+
T Consensus 72 ~~~~-------~~~~~~~~~~~~--~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~ 141 (275)
T PF00780_consen 72 SAPL-------AFPKSRSLPTKL--PETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPP 141 (275)
T ss_pred cccc-------cccccccccccc--cccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCc
Confidence 0000 000000000000 2344555555 11 44566666778888887653 45555553 4667
Q ss_pred EEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCC------------CCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 003871 549 TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH------------QNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616 (790)
Q Consensus 549 ~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h------------~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 616 (790)
.+++|.++ .++.|..+ ...+.|+.++.....+... ..++..+.. +++.+|++ . |..-.+.|..
T Consensus 142 ~~i~~~~~-~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~-~~~g~fv~~~ 216 (275)
T PF00780_consen 142 SSIAFLGN-KICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-Y-DNIGVFVNKN 216 (275)
T ss_pred EEEEEeCC-EEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-e-cceEEEEcCC
Confidence 88999844 66666654 4788899877654433211 123333333 34556654 2 3344445554
Q ss_pred CCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecC
Q 003871 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP 676 (790)
Q Consensus 617 ~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~ 676 (790)
+ +......+. +. ..+.++++. ..+|++-.++.|.||++.+++.++++..
T Consensus 217 G-~~~r~~~i~-W~-------~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 217 G-EPSRKSTIQ-WS-------SAPQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred C-CcCcccEEE-cC-------CchhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 4 222222222 21 245566664 3477776667799999999999998854
No 370
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.22 E-value=0.073 Score=57.44 Aligned_cols=207 Identities=15% Similarity=0.127 Sum_probs=112.1
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-------------------------------------------eEEEE
Q 003871 547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKK-------------------------------------------TKAKL 582 (790)
Q Consensus 547 ~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~-------------------------------------------~~~~l 582 (790)
.|+.+.++++. -+++|...|.|.+|.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 46778888887 88888888887777532110 11122
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeee--eccCCCCCCCCeEEEEEeC-----CC---CEE
Q 003871 583 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS--FQTGLVPETTIVNHIQFHP-----DQ---IHL 652 (790)
Q Consensus 583 ~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~--~~~~~~~~~~~v~~i~~sp-----~~---~~l 652 (790)
....++|++++.|.-| ++|.|..+|.+.|.|+++...+....+.. ...... ..++++.|+- |+ -.+
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~---~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSS---SYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS-------EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccc---cCeeEEEEEEEecCCCcccceEE
Confidence 3346789999997544 99999999999999999866655444442 111122 5788888863 22 345
Q ss_pred EEE-eCCcEEEEECC--C-CceeeeecC--CCCCCCeEEEE-EecCC--------------------CEEEEEEcCCeEE
Q 003871 653 LSI-HEGQIDVYEAP--T-LNHTSQLVP--DKMDLPITYAT-YSCDG--------------------KCIYVSCKSGHVK 705 (790)
Q Consensus 653 ~~~-~dg~I~iwd~~--~-~~~~~~~~~--~~h~~~v~~l~-~s~dg--------------------~~l~sgs~dg~i~ 705 (790)
++| ..|.+.+|.+. . +.....+.. ..+..+|..+. |+.+. +-++....+..++
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 556 67888888764 1 211111111 12355666555 43221 1233444578899
Q ss_pred EEECCCCeEEEEeccccccCCCCcccccceEEEEE-----ecCCCCEEEEEeCCCcEEEEecCCCccc
Q 003871 706 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA-----HPLEPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 706 vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~-----sp~d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
++...+.+..+.... ..+-+.++++ .. .+..|++-..||.|+++.+..-++.
T Consensus 239 v~~~~~~k~~~K~~~----------~~~~~~~~~vv~~~~~~-~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFD----------DPFLCSSASVVPTISRN-GGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp EE-TT---EEEEE-S----------S-EEEEEEEEEEEE-EE-EEEEEEEEETTSEEEEEETTT--EE
T ss_pred EEeCCCCcccceeec----------cccccceEEEEeecccC-CceEEEEEECCCcEEEEECCCchHh
Confidence 999988876555331 1111223333 22 4667889999999999999876655
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.21 E-value=0.031 Score=59.26 Aligned_cols=180 Identities=16% Similarity=0.099 Sum_probs=107.3
Q ss_pred CcEEEEeCCCCceEEEEcCC-CCCEEEEE---EeCC----CCEEEEEeC----------CCcEEEEECCCCce--eecee
Q 003871 566 SSILVHCPCTKKTKAKLKGH-QNRITCLA---YSLS----LNVLVSSGA----------DAQLCVWDAVGWKK--LCSKF 625 (790)
Q Consensus 566 g~I~iwd~~~~~~~~~l~~h-~~~v~~l~---~spd----g~~l~s~s~----------dg~I~vwd~~~~~~--~~~~~ 625 (790)
+.|++.|..+.+.+..+.-. ...+.+++ +..+ ..+++.|+. .|.|.++++..... .....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36888888887776555321 22344443 3322 457777653 28899999988410 01111
Q ss_pred eeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCc-eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE
Q 003871 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 704 (790)
Q Consensus 626 l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i 704 (790)
+.... .. ++|++++-- +..|+++.++.|++|++...+ ....-... ....+.++... +++++.|.....+
T Consensus 82 i~~~~--~~---g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~--~~~I~vgD~~~sv 151 (321)
T PF03178_consen 82 IHSTE--VK---GPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVF--KNYILVGDAMKSV 151 (321)
T ss_dssp EEEEE--ES---S-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEe--ec---CcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheec-ceEEEEEEecc--ccEEEEEEcccCE
Confidence 21111 11 688888766 345888888999999998777 44333221 13355555544 6699999988888
Q ss_pred EEEECCC-CeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 705 KVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 705 ~vwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
.++..+. +.....+.. ...+.+++++.|-+ +++.++.+..+|.+.++....
T Consensus 152 ~~~~~~~~~~~l~~va~--------d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 152 SLLRYDEENNKLILVAR--------DYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEETTTE-EEEEEE--------ESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEccCCEEEEEEe--------cCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECC
Confidence 8875543 222222221 12244566899987 557999999999999998863
No 372
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.15 E-value=0.59 Score=53.99 Aligned_cols=329 Identities=11% Similarity=0.036 Sum_probs=168.6
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
.|+.++ |- +|++..+..++.|..+..+.+--... +........+...--...|.-..|-.|+.+|+++..||.
T Consensus 534 aCLDis-p~----~d~~~~s~~~aVG~Ws~~~~~l~~~p--d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~ 606 (1096)
T KOG1897|consen 534 ACLDIS-PL----GDAPNKSRLLAVGLWSDISMILTFLP--DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGA 606 (1096)
T ss_pred EEEecc-cC----CCCCCcceEEEEEeecceEEEEEECC--CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCce
Confidence 778786 33 44555444458888777665544321 011111111111112344666667777889999999999
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEecCCeEEEEECCCCcEEEEE
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATF 541 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~sdg~I~vwd~~~~~~~~~~ 541 (790)
+.-+.++.. +|.........-...|+.--.|+ ...+++++|.-..+|... ++...+-
T Consensus 607 l~~fv~d~~-------------------tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~sp 666 (1096)
T KOG1897|consen 607 LLYFVLDIN-------------------TGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSP 666 (1096)
T ss_pred EEEEEEEcc-------------------cceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEec
Confidence 887765432 22211111000134555555566 566777777666666543 3433221
Q ss_pred cCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCc--eEEEEcCCCCCEEEEEEeCCCCEEEEEeC----------
Q 003871 542 ANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCLAYSLSLNVLVSSGA---------- 606 (790)
Q Consensus 542 ~~~~~~v~~l~~s~~g---~l~sgs~dg~I~iwd~~~~~--~~~~l~~h~~~v~~l~~spdg~~l~s~s~---------- 606 (790)
-.-+.--.-+.|+.++ .++++.. +.+.+.-++.-+ .++++.-+ .....+++.+....+++.+.
T Consensus 667 ls~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ 744 (1096)
T KOG1897|consen 667 LSLKEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYG 744 (1096)
T ss_pred cchHHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcC
Confidence 1111100112233333 4555443 445555443211 12333322 33556666664444443332
Q ss_pred -C---CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC-CCEEEEEe-----------CCcEEEEECCCCce
Q 003871 607 -D---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIH-----------EGQIDVYEAPTLNH 670 (790)
Q Consensus 607 -d---g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~-~~~l~~~~-----------dg~I~iwd~~~~~~ 670 (790)
. ..++++|-++.+......+...... ..+.++.|..| +.++++|. .|.|.+|....++.
T Consensus 745 ee~~~s~l~vlD~nTf~vl~~hef~~~E~~-----~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 745 EEYEVSFLRVLDQNTFEVLSSHEFERNETA-----LSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred CcceEEEEEEecCCceeEEeecccccccee-----eeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 1 1367777777443333332211111 34566678887 67777641 36788888877444
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEE
Q 003871 671 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 750 (790)
Q Consensus 671 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las 750 (790)
++......-.+.+.++.. -+|+++|. -+..|++|++.+++.+..-. +| ..++. ++...- .|+.++.
T Consensus 820 L~~v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~-------~~-~~~~~--aL~l~v-~gdeI~V 885 (1096)
T KOG1897|consen 820 LELVAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIEC-------NI-SNPII--ALDLQV-KGDEIAV 885 (1096)
T ss_pred eeeeeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhh-------cc-cCCeE--EEEEEe-cCcEEEE
Confidence 444321111445555443 35776654 46789999999885544432 22 22444 444444 6788888
Q ss_pred EeCCCcEEEEe
Q 003871 751 GLTNGRVHVIE 761 (790)
Q Consensus 751 ~s~Dg~i~iW~ 761 (790)
|.-=+++.+-.
T Consensus 886 gDlm~Sitll~ 896 (1096)
T KOG1897|consen 886 GDLMRSITLLQ 896 (1096)
T ss_pred eeccceEEEEE
Confidence 87766665543
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.29 Score=50.90 Aligned_cols=205 Identities=19% Similarity=0.103 Sum_probs=115.4
Q ss_pred CCeEEEEECCCCcEEEEEcCCCCCeEEEEE-cCCCeEEEEeCCCcEEEEeCCCCceEEEEc----C-CCCCEEEEEEeCC
Q 003871 524 GGKISIFSLETFQTLATFANPPPIATYFIL-LPQDLFAFGFDDSSILVHCPCTKKTKAKLK----G-HQNRITCLAYSLS 597 (790)
Q Consensus 524 dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~-s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~----~-h~~~v~~l~~spd 597 (790)
.+.|.-|+..+++. ..+..+ ..+.++.. ...+.|+++.. .+++++.+++..+..+. + -....+.+...|+
T Consensus 46 ~~~i~r~~~~~g~~-~~~~~p-~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd 121 (307)
T COG3386 46 GGRIHRLDPETGKK-RVFPSP-GGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD 121 (307)
T ss_pred CCeEEEecCCcCce-EEEECC-CCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC
Confidence 67888888876543 333322 22344443 33335555433 35667766665533321 1 1245678889999
Q ss_pred CCEEEEEeC-----------CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEE
Q 003871 598 LNVLVSSGA-----------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYE 664 (790)
Q Consensus 598 g~~l~s~s~-----------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd 664 (790)
|.+.++... -|.++.+|... . ... +...+- ...+.++||||++.|+.+ ..+.|+-|+
T Consensus 122 G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g-~-----~~~-l~~~~~---~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 122 GRIWFGDMGYFDLGKSEERPTGSLYRVDPDG-G-----VVR-LLDDDL---TIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCEEEeCCCccccCccccCCcceEEEEcCCC-C-----EEE-eecCcE---EecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 987665333 12344444322 1 111 222211 345789999999988885 457788887
Q ss_pred CCC--Cce---eeeecCCCCCCCeEEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEeccccccCCCCcccccceEEE
Q 003871 665 APT--LNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 738 (790)
Q Consensus 665 ~~~--~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg-~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 738 (790)
+.. +.. ...+......+..-.++...+|.+-+++..+| .|.+|+.+ |+++..+..+. .. +.++
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~--------~~--~t~~ 260 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV--------KR--PTNP 260 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC--------CC--Cccc
Confidence 752 211 11111111345667788888898876555554 99999999 88888776431 12 3377
Q ss_pred EEecCCCCEEEEEeC
Q 003871 739 AAHPLEPNRIALGLT 753 (790)
Q Consensus 739 ~~sp~d~~~las~s~ 753 (790)
+|-..+.+.|...+.
T Consensus 261 ~FgG~~~~~L~iTs~ 275 (307)
T COG3386 261 AFGGPDLNTLYITSA 275 (307)
T ss_pred eEeCCCcCEEEEEec
Confidence 776545565554443
No 374
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.08 E-value=0.57 Score=51.61 Aligned_cols=241 Identities=12% Similarity=0.082 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCEEEEEeC-CC----cEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C
Q 003871 444 VVRLIYSHSGDFLVALTQ-TA----THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 444 V~~l~~spdg~~l~s~~~-dg----~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
+...++||||+++|.+-+ .| .++++|+.++.. +...+ .......+.|. +
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~---------------------l~d~i---~~~~~~~~~W~~d~ 181 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF---------------------LPDGI---ENPKFSSVSWSDDG 181 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE---------------------EEEEE---EEEESEEEEECTTS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC---------------------cCCcc---cccccceEEEeCCC
Confidence 446789999999887643 34 577777766433 21111 01111237777 4
Q ss_pred cEEEEec-C-----------CeEEEEECCCCcE--EEEEcCCCCC--eEEEEEcCCC-eEEE-EeCC---CcEEEEeCCC
Q 003871 517 SHLFSAS-G-----------GKISIFSLETFQT--LATFANPPPI--ATYFILLPQD-LFAF-GFDD---SSILVHCPCT 575 (790)
Q Consensus 517 ~~l~s~s-d-----------g~I~vwd~~~~~~--~~~~~~~~~~--v~~l~~s~~g-~l~s-gs~d---g~I~iwd~~~ 575 (790)
+.++... + ..|..|.+.+... ...+...... ...+..++|+ +++. .... ..+++.|+..
T Consensus 182 ~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 182 KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 5554433 2 1378888876532 3445444333 5678889999 5443 3322 3588888887
Q ss_pred C----ceEEEEcCCCCCEEEEEEeCCCCEEEEEeC---CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC
Q 003871 576 K----KTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 648 (790)
Q Consensus 576 ~----~~~~~l~~h~~~v~~l~~spdg~~l~s~s~---dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~ 648 (790)
+ .....+......+....-+..+.+++.... ++.|.-.++..........+- ++.... ..+..+.. .
T Consensus 262 ~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l-~~~~~~---~~l~~~~~--~ 335 (414)
T PF02897_consen 262 GGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVL-IPEDED---VSLEDVSL--F 335 (414)
T ss_dssp TTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEE-E--SSS---EEEEEEEE--E
T ss_pred cCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEE-cCCCCc---eeEEEEEE--E
Confidence 4 233333333334433333334444444332 356777777764321111111 111111 13444444 4
Q ss_pred CCEEEEE--eCC--cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc----CCeEEEEECCCCeEE
Q 003871 649 QIHLLSI--HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK----SGHVKVFDTSTLELR 715 (790)
Q Consensus 649 ~~~l~~~--~dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~----dg~i~vwd~~~~~~~ 715 (790)
+.+|+.. .++ .|+++|+..+.....+.... .+.|..+...++++.+...-. -++++.||+.+++..
T Consensus 336 ~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 336 KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 5566653 444 49999998344444444332 445666666666665442222 378999999998754
No 375
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.14 Score=50.52 Aligned_cols=226 Identities=16% Similarity=0.054 Sum_probs=128.1
Q ss_pred CcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCc-EEEEeCCCCceEEEEcCCCCCE--EEEEEeCCCCEEEEEeCC--
Q 003871 535 FQTLATFANPPPIATYFILLPQD--LFAFGFDDSS-ILVHCPCTKKTKAKLKGHQNRI--TCLAYSLSLNVLVSSGAD-- 607 (790)
Q Consensus 535 ~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~-I~iwd~~~~~~~~~l~~h~~~v--~~l~~spdg~~l~s~s~d-- 607 (790)
|+++.... -...-..++++|.- -++.+-.-|+ ..++|..+.+....+...++.- -.=.|||||.+|...-.|
T Consensus 58 Gk~v~~~~-lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd 136 (366)
T COG3490 58 GKIVFATA-LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD 136 (366)
T ss_pred Cceeeeee-cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCC
Confidence 45554433 22334567888887 6777777775 5688988776655443222111 113699999998865433
Q ss_pred ---CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeC--------C-----------cEEEEEC
Q 003871 608 ---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE--------G-----------QIDVYEA 665 (790)
Q Consensus 608 ---g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~d--------g-----------~I~iwd~ 665 (790)
|.|-|||.+.+- ..+..++. |. -....+.+.+||+.+++... | ++.+.|.
T Consensus 137 ~~rGViGvYd~r~~f----qrvgE~~t-~G---iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~ 208 (366)
T COG3490 137 PNRGVIGVYDAREGF----QRVGEFST-HG---IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDA 208 (366)
T ss_pred CCCceEEEEeccccc----ceeccccc-CC---cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEec
Confidence 679999998521 12221222 22 34567899999999987321 1 2566676
Q ss_pred CCCceeeeecCC--CCCCCeEEEEEecCCCEEEEEEcCCe-----EEEEECCCCeEEEEeccccccCCCCcccccceEEE
Q 003871 666 PTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGH-----VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 738 (790)
Q Consensus 666 ~~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~sgs~dg~-----i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 738 (790)
.+|..+.+.... .+..+|..++..+||..++.+-..|. -.+=....|+.+.-+....-...+- .+- +-++
T Consensus 209 atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~-anY--igsi 285 (366)
T COG3490 209 ATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAF-ANY--IGSI 285 (366)
T ss_pred cccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHH-Hhh--hhhe
Confidence 677776554433 34678999999999987665443221 1111222333333322110000000 112 2377
Q ss_pred EEecCCCCEEEEEeCCCcEEEEecCCCccccccC
Q 003871 739 AAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 772 (790)
Q Consensus 739 ~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~~ 772 (790)
+.+..++-..+|.-..+...+||..+|+..-..+
T Consensus 286 A~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 286 AANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred eecccCCeEEEecCCCCeEEEEEcCCCcEEeccc
Confidence 7776445444555555678899999998664443
No 376
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.94 E-value=0.0023 Score=42.52 Aligned_cols=39 Identities=31% Similarity=0.512 Sum_probs=34.3
Q ss_pred CceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 003871 576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 614 (790)
Q Consensus 576 ~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd 614 (790)
+++...+..|...|.++.|+++++.+++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778889999999999999999999999999996
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.048 Score=58.19 Aligned_cols=137 Identities=17% Similarity=0.283 Sum_probs=96.3
Q ss_pred EEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC---eE-----EEEeCCCcEEEEeCCCC-c-eEEEEcCCC-
Q 003871 519 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LF-----AFGFDDSSILVHCPCTK-K-TKAKLKGHQ- 586 (790)
Q Consensus 519 l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g---~l-----~sgs~dg~I~iwd~~~~-~-~~~~l~~h~- 586 (790)
+.++. ...++-.|+++|+.+....-+.. |+-+.+.|+. .+ +.|-.|..|.-||.+-. . .+..-.+|.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 33444 57788899999999999886665 7777888876 32 45777889999998743 2 222223332
Q ss_pred ---CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEE
Q 003871 587 ---NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVY 663 (790)
Q Consensus 587 ---~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iw 663 (790)
....|.+-..+| ++|+||.+|.|++||--. .. .++...+-. .+|..|..+.+|+++++..+..+.+.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~-~~-----AKTAlPgLG---~~I~hVdvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIG-RR-----AKTALPGLG---DAIKHVDVTADGKWILATCKTYLLLI 497 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehhhh-hh-----hhhcccccC---CceeeEEeeccCcEEEEecccEEEEE
Confidence 345666666666 899999999999999732 21 111222333 68999999999999999888888888
Q ss_pred ECC
Q 003871 664 EAP 666 (790)
Q Consensus 664 d~~ 666 (790)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 764
No 378
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.94 E-value=0.37 Score=53.13 Aligned_cols=240 Identities=12% Similarity=0.047 Sum_probs=123.1
Q ss_pred CCCCCCCCCCCCCCCCCCcccceeccC-CCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCC-
Q 003871 386 SSCFNDNNQSRESTSLPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA- 463 (790)
Q Consensus 386 ~~~fs~~~~~~s~dg~~la~~~at~s~-d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg- 463 (790)
..++| |||+++|..+-.+|. ...+++.|+.. +....-.+. ...-..+.|.+|++.++....+.
T Consensus 128 ~~~~S-------pdg~~la~~~s~~G~e~~~l~v~Dl~t----g~~l~d~i~----~~~~~~~~W~~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 128 GFSVS-------PDGKRLAYSLSDGGSEWYTLRVFDLET----GKFLPDGIE----NPKFSSVSWSDDGKGFFYTRFDED 192 (414)
T ss_dssp EEEET-------TTSSEEEEEEEETTSSEEEEEEEETTT----TEEEEEEEE----EEESEEEEECTTSSEEEEEECSTT
T ss_pred eeeEC-------CCCCEEEEEecCCCCceEEEEEEECCC----CcCcCCccc----ccccceEEEeCCCCEEEEEEeCcc
Confidence 45677 999999444333333 35699999973 443322221 11223499999999887776533
Q ss_pred ----------cEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCC-eEEEEec--CcEEEEec----C-C
Q 003871 464 ----------THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS-ISCFALR--GSHLFSAS----G-G 525 (790)
Q Consensus 464 ----------~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-V~~l~~s--~~~l~s~s----d-g 525 (790)
.|..|++.+... ...++ +.+..... ...+..+ +++++... + .
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~-----------------~d~lv---fe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s 252 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQS-----------------EDELV---FEEPDEPFWFVSVSRSKDGRYLFISSSSGTSES 252 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GG-----------------G-EEE---EC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEE
T ss_pred cccccCCCCcEEEEEECCCChH-----------------hCeeE---EeecCCCcEEEEEEecCcccEEEEEEEccccCC
Confidence 255666554322 00011 11111222 4566667 77766443 3 4
Q ss_pred eEEEEECCCC----cEEEEEcCCCCCeEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCce---EEEEcCCCCC--EEEE
Q 003871 526 KISIFSLETF----QTLATFANPPPIATYFILLPQD-LFAFGF---DDSSILVHCPCTKKT---KAKLKGHQNR--ITCL 592 (790)
Q Consensus 526 ~I~vwd~~~~----~~~~~~~~~~~~v~~l~~s~~g-~l~sgs---~dg~I~iwd~~~~~~---~~~l~~h~~~--v~~l 592 (790)
.+.+.+...+ .....+......+....-+..+ +++... ..+.|.-.++.+... ...+..+... +..+
T Consensus 253 ~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~ 332 (414)
T PF02897_consen 253 EVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDV 332 (414)
T ss_dssp EEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEE
T ss_pred eEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEE
Confidence 6888888764 2333333333344333323344 333322 234677778776642 2244445553 4444
Q ss_pred EEeCCCCEEEE-EeCCC--cEEEEECC-CCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE---E--eCCcEEEE
Q 003871 593 AYSLSLNVLVS-SGADA--QLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS---I--HEGQIDVY 663 (790)
Q Consensus 593 ~~spdg~~l~s-~s~dg--~I~vwd~~-~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~---~--~dg~I~iw 663 (790)
.. .+++|+. ...++ .|+++|+. +.. . ..+. ++.. +.|..+...+++..+.. + .-++++.|
T Consensus 333 ~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~-~--~~~~-~p~~-----g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~ 401 (414)
T PF02897_consen 333 SL--FKDYLVLSYRENGSSRLRVYDLDDGKE-S--REIP-LPEA-----GSVSGVSGDFDSDELRFSYSSFTTPPTVYRY 401 (414)
T ss_dssp EE--ETTEEEEEEEETTEEEEEEEETT-TEE-E--EEEE-SSSS-----SEEEEEES-TT-SEEEEEEEETTEEEEEEEE
T ss_pred EE--ECCEEEEEEEECCccEEEEEECCCCcE-E--eeec-CCcc-----eEEeccCCCCCCCEEEEEEeCCCCCCEEEEE
Confidence 44 3445544 44444 58899998 422 1 1122 2221 45666666677766654 3 45679999
Q ss_pred ECCCCcee
Q 003871 664 EAPTLNHT 671 (790)
Q Consensus 664 d~~~~~~~ 671 (790)
|+.+++..
T Consensus 402 d~~t~~~~ 409 (414)
T PF02897_consen 402 DLATGELT 409 (414)
T ss_dssp ETTTTCEE
T ss_pred ECCCCCEE
Confidence 99988753
No 379
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.92 E-value=0.02 Score=66.01 Aligned_cols=144 Identities=16% Similarity=0.136 Sum_probs=95.4
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEcCCCCC-EEEEEEeC-----CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccC
Q 003871 559 FAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSL-----SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 632 (790)
Q Consensus 559 l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~-v~~l~~sp-----dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~ 632 (790)
|........|+-.|+..|+.+..+..|... |..++-.. +......|-.+..+..||.+-.. .+.+..-...
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~v~~~~k~ 573 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKLVDSQSKQ 573 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC---Cceeeccccc
Confidence 333445678999999999999999887643 55543221 12345667788899999998632 1111100000
Q ss_pred CCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 003871 633 LVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 633 ~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~ 709 (790)
. ......+|++-+.+|...+.+.+|.|++||- .|+.-++..+ +-+.+|.++..+.||+||++.+ +..+.+++.
T Consensus 574 Y-~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 574 Y-SSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALP-GLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred c-ccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCC-CCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 0 0114678888888885555569999999995 4444344333 3478999999999999998766 566777775
No 380
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0043 Score=67.21 Aligned_cols=94 Identities=15% Similarity=0.094 Sum_probs=74.9
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEE-EEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Q 003871 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 622 (790)
Q Consensus 545 ~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~-~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~ 622 (790)
...+.-+.|+|.- .+|.+..+|.|.+..+. -+.+..+.-|...++ +++|.|||+.||.|-.||+|++.|+.++....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4457789999998 99999999999999887 566677776666677 99999999999999999999999999976544
Q ss_pred ceeeeeeccCCCCCCCCeEEEEEeC
Q 003871 623 SKFLHSFQTGLVPETTIVNHIQFHP 647 (790)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~i~~sp 647 (790)
..+.. .. ..|.++.|+|
T Consensus 99 ~~~~s-----~e---~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFS-----VE---TDISKGIWDR 115 (665)
T ss_pred ccccc-----cc---cchheeeccc
Confidence 32221 11 4678888874
No 381
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.92 E-value=0.025 Score=65.31 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=93.7
Q ss_pred CCeEEEEECCCCcEEEEEcCCCCC-eEEEEEcC-----CC-eEEEEeCCCcEEEEeCCCCc--eEE-EEc--CCCCCEEE
Q 003871 524 GGKISIFSLETFQTLATFANPPPI-ATYFILLP-----QD-LFAFGFDDSSILVHCPCTKK--TKA-KLK--GHQNRITC 591 (790)
Q Consensus 524 dg~I~vwd~~~~~~~~~~~~~~~~-v~~l~~s~-----~g-~l~sgs~dg~I~iwd~~~~~--~~~-~l~--~h~~~v~~ 591 (790)
...|+-.|+++|+.+..+..+... |..++-.. ++ ..+.|-.+..+..||.+-.. ++. ..+ ......+|
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 478999999999999999877654 55443221 12 56778888999999988532 221 111 12345778
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEEC
Q 003871 592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 665 (790)
Q Consensus 592 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~ 665 (790)
++-+.+| +||+|+.+|.||+||-- |.. .++...+-. .+|.+|..+.||+++++..+..+.+++.
T Consensus 583 ~aTt~~G-~iavgs~~G~IRLyd~~-g~~-----AKT~lp~lG---~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 583 FATTEDG-YIAVGSNKGDIRLYDRL-GKR-----AKTALPGLG---DPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred EEecCCc-eEEEEeCCCcEEeeccc-chh-----hhhcCCCCC---CCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 8887777 79999999999999943 221 222222322 6999999999999999988888888885
No 382
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.89 E-value=0.49 Score=50.31 Aligned_cols=230 Identities=14% Similarity=0.120 Sum_probs=104.4
Q ss_pred CCCEEEEEeC-CCcEEEEecCCCCccccccccccccccccCCCceeeeeccc----C--CCCCCeEEEEec-CcEEEEec
Q 003871 452 SGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA----A--DPKDSISCFALR-GSHLFSAS 523 (790)
Q Consensus 452 dg~~l~s~~~-dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~----~--~~~~~V~~l~~s-~~~l~s~s 523 (790)
+.++|+..+- .+.|.|.|+.+... ..++.+..-. . +-..+=+.-+.- |+.++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr-----------------~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~l 148 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPR-----------------KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISAL 148 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TT-----------------S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCC-----------------CCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEec
Confidence 4678888885 78999999886432 1111111100 0 001111111222 55666642
Q ss_pred -------CCeEEEEECCCCcEEEEEcCCCC---CeEEEEEcCCC-eEEEEeC--------------------CCcEEEEe
Q 003871 524 -------GGKISIFSLETFQTLATFANPPP---IATYFILLPQD-LFAFGFD--------------------DSSILVHC 572 (790)
Q Consensus 524 -------dg~I~vwd~~~~~~~~~~~~~~~---~v~~l~~s~~g-~l~sgs~--------------------dg~I~iwd 572 (790)
-|.+.+.|-++.+.......... --..+.|.|.. .+++... ..++.+||
T Consensus 149 Gd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD 228 (461)
T PF05694_consen 149 GDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWD 228 (461)
T ss_dssp EETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEE
T ss_pred cCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEE
Confidence 25788899888887777654322 23567777776 6666432 24799999
Q ss_pred CCCCceEEEEcCCC--CCEEEEEEeCC--CCE-EEEEeCCCcEEEEEC-CCCceeeceeeeeeccCC-C----CC-----
Q 003871 573 PCTKKTKAKLKGHQ--NRITCLAYSLS--LNV-LVSSGADAQLCVWDA-VGWKKLCSKFLHSFQTGL-V----PE----- 636 (790)
Q Consensus 573 ~~~~~~~~~l~~h~--~~v~~l~~spd--g~~-l~s~s~dg~I~vwd~-~~~~~~~~~~l~~~~~~~-~----~~----- 636 (790)
+.+.+.++++.--. ..+..+.|..+ ..+ ++.+.-.++|..|-- +.++-...+.+. ++... . +.
T Consensus 229 ~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~-ip~~~v~~~~lp~ml~~~ 307 (461)
T PF05694_consen 229 WSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVID-IPAKKVEGWILPEMLKPF 307 (461)
T ss_dssp TTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEE-E--EE--SS---GGGGGG
T ss_pred CCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEE-CCCcccCccccccccccc
Confidence 99999999886432 23556777544 344 343334455555433 444433333333 32210 0 00
Q ss_pred ---CCCeEEEEEeCCCCEEEEE--eCCcEEEEECCCCc---eeeeecCCC--------------CCCCeEEEEEecCCCE
Q 003871 637 ---TTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN---HTSQLVPDK--------------MDLPITYATYSCDGKC 694 (790)
Q Consensus 637 ---~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~~~~---~~~~~~~~~--------------h~~~v~~l~~s~dg~~ 694 (790)
..-|+.|.+|.|.++|.++ ..|.|+.||+.... ++.++...+ -.+...-+..|.||+.
T Consensus 308 ~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkR 387 (461)
T PF05694_consen 308 GAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKR 387 (461)
T ss_dssp -EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSE
T ss_pred ccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeE
Confidence 1458999999999999996 79999999997532 333222110 0223467888999998
Q ss_pred EEEEE
Q 003871 695 IYVSC 699 (790)
Q Consensus 695 l~sgs 699 (790)
|+..+
T Consensus 388 lYvTn 392 (461)
T PF05694_consen 388 LYVTN 392 (461)
T ss_dssp EEEE-
T ss_pred EEEEe
Confidence 87654
No 383
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.038 Score=58.92 Aligned_cols=144 Identities=14% Similarity=0.126 Sum_probs=100.0
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCE-------EEEEeCCCcEEEEECCCCceeeceeeeeec
Q 003871 558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV-------LVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630 (790)
Q Consensus 558 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~-------l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~ 630 (790)
++.++.....++-.|+..|+.+..++-|.. |+-+.+.|+.+. -+.|-.|..|.-||.+-.... .+. ..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~-~~ 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLA-VV 422 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eee-ee
Confidence 566777777899999999999999987766 888888887542 235667889999999842211 111 11
Q ss_pred cCCC-CCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 003871 631 TGLV-PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 631 ~~~~-~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~ 709 (790)
.+|. .......|.+-..+|..++.+.+|.|++||- .+..-++..+ +-+.+|..+..+.||++|++.+ +.++.+-++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 1211 0013566777777775555579999999997 5555555443 3588999999999999988765 566666664
No 384
>PHA02713 hypothetical protein; Provisional
Probab=96.76 E-value=0.14 Score=58.52 Aligned_cols=197 Identities=12% Similarity=0.038 Sum_probs=100.4
Q ss_pred CC-eEEEEeCC------CcEEEEeCCCCceEEEEcC-CCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCceee
Q 003871 556 QD-LFAFGFDD------SSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLC 622 (790)
Q Consensus 556 ~g-~l~sgs~d------g~I~iwd~~~~~~~~~l~~-h~~~v~~l~~spdg~~l~s~s~dg-----~I~vwd~~~~~~~~ 622 (790)
++ .+++|+.+ ..+..||..++.-. .+.. ....-......-+|+..+.||.++ ++..||..+.+-
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W-- 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKW-- 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeE--
Confidence 56 66666643 35788998876432 2211 111111112223677888888764 488899887432
Q ss_pred ceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eC-----------------------CcEEEEECCCCceeeeecCCC
Q 003871 623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-----------------------GQIDVYEAPTLNHTSQLVPDK 678 (790)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d-----------------------g~I~iwd~~~~~~~~~~~~~~ 678 (790)
..+..++.... ....+++ +|+..+.| .+ ..+..||..+.+-... ..-
T Consensus 380 -~~~~~mp~~r~----~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m- 450 (557)
T PHA02713 380 -KMLPDMPIALS----SYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNF- 450 (557)
T ss_pred -EECCCCCcccc----cccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec-CCC-
Confidence 22222222211 1112222 45555554 32 2477888876543211 110
Q ss_pred CCCCeEEEEEecCCCEEEEEEcC------CeEEEEECCC-CeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEE
Q 003871 679 MDLPITYATYSCDGKCIYVSCKS------GHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 679 h~~~v~~l~~s~dg~~l~sgs~d------g~i~vwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~ 751 (790)
........+..-+|+..+.||.+ ..+..||..+ .+-...-.. +.. .... +++.. ++.+.++|
T Consensus 451 ~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m----~~~--r~~~---~~~~~--~~~iyv~G 519 (557)
T PHA02713 451 WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT----ESR--LSAL---HTILH--DNTIMMLH 519 (557)
T ss_pred CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc----Ccc--cccc---eeEEE--CCEEEEEe
Confidence 01111222233457777777754 2467899887 443221110 000 1111 22222 67899999
Q ss_pred eCCC--cEEEEecCCCccccccCCCCCC
Q 003871 752 LTNG--RVHVIEPLESEVEWGKLPFTDS 777 (790)
Q Consensus 752 s~Dg--~i~iW~~~~~~~~w~~~~~~~~ 777 (790)
|.|| .+-.||+.+.+ |....|+..
T Consensus 520 g~~~~~~~e~yd~~~~~--W~~~~~~~~ 545 (557)
T PHA02713 520 CYESYMLQDTFNVYTYE--WNHICHQHS 545 (557)
T ss_pred eecceeehhhcCccccc--ccchhhhcC
Confidence 9998 77788887764 987776653
No 385
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.74 E-value=0.1 Score=44.34 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=65.2
Q ss_pred eEEEE---EcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Q 003871 548 ATYFI---LLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 622 (790)
Q Consensus 548 v~~l~---~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~ 622 (790)
|++++ |..+| .|++|+.|..|++|+- .+.+..+.. ...|+++.-... ..++.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~----- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ----- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc-----
Confidence 44444 44566 8999999999999984 356666663 456888877665 5789999999999998754
Q ss_pred ceeeeeeccCCCCCCCCeEEEEEeC-C--C-CEEEEE-eCCcEE
Q 003871 623 SKFLHSFQTGLVPETTIVNHIQFHP-D--Q-IHLLSI-HEGQID 661 (790)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~i~~sp-~--~-~~l~~~-~dg~I~ 661 (790)
+..+ +...+ .++++++.. + | ..|++| .+|.|-
T Consensus 73 -RlWR-iKSK~-----~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 -RLWR-IKSKN-----QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eeee-eccCC-----CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 33333 466665543 2 2 356666 677654
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.73 E-value=0.099 Score=59.59 Aligned_cols=185 Identities=10% Similarity=-0.010 Sum_probs=100.7
Q ss_pred CCeEEEEec--CcEEEEec-------CC--eEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---------
Q 003871 507 DSISCFALR--GSHLFSAS-------GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD--------- 565 (790)
Q Consensus 507 ~~V~~l~~s--~~~l~s~s-------dg--~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~d--------- 565 (790)
..+.+.+++ |+.++... |. .|.+++.. +.. ..+.. ....+.-.|+|+| .+++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 356677777 66654432 32 55565643 222 33322 2237888999998 66655432
Q ss_pred ---CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEE---EECCCCceeeceeeeeeccCCCCCCCC
Q 003871 566 ---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV---WDAVGWKKLCSKFLHSFQTGLVPETTI 639 (790)
Q Consensus 566 ---g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~v---wd~~~~~~~~~~~l~~~~~~~~~~~~~ 639 (790)
+.+++.++..+.... ...+.|..+.|||||..++... ++.|.+ -....|......+.. +..+-. ..
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~-l~~~l~---~~ 498 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPRE-VGPGLG---DT 498 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEE-eecccC---Cc
Confidence 233333444333322 2345799999999999988766 477776 444444421111211 322222 34
Q ss_pred eEEEEEeCCCCEEEEEe--CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEE
Q 003871 640 VNHIQFHPDQIHLLSIH--EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 705 (790)
Q Consensus 640 v~~i~~sp~~~~l~~~~--dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~ 705 (790)
+.++.|.+++.+++... +..++..++. |.....+.......++..++=+++ -++....+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 68899999998654433 3345555554 332222222222556777776653 455555566443
No 387
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.70 E-value=0.53 Score=55.26 Aligned_cols=201 Identities=12% Similarity=0.038 Sum_probs=120.4
Q ss_pred CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCC--------eEEEEEc----------------CCC-eEEEEeCCCcEE
Q 003871 516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPI--------ATYFILL----------------PQD-LFAFGFDDSSIL 569 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~--------v~~l~~s----------------~~g-~l~sgs~dg~I~ 569 (790)
+..++.++ ++.|.-.|..+|+.+.++...... .+.+++. ..+ .++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55666666 899999999999999888633211 1112221 123 788899999999
Q ss_pred EEeCCCCceEEEEcCCCCCEE-------------EEEEeC--CCCEEEEEeC----------CCcEEEEECCCCceeece
Q 003871 570 VHCPCTKKTKAKLKGHQNRIT-------------CLAYSL--SLNVLVSSGA----------DAQLCVWDAVGWKKLCSK 624 (790)
Q Consensus 570 iwd~~~~~~~~~l~~h~~~v~-------------~l~~sp--dg~~l~s~s~----------dg~I~vwd~~~~~~~~~~ 624 (790)
-.|.++|+.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++|+.....
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876632 22111 111122 2345666643 688999999999876543
Q ss_pred eeee------eccCCC--CCCCCe-EEEEEeCCCCEEEEE-------------------eCCcEEEEECCCCceeeeecC
Q 003871 625 FLHS------FQTGLV--PETTIV-NHIQFHPDQIHLLSI-------------------HEGQIDVYEAPTLNHTSQLVP 676 (790)
Q Consensus 625 ~l~~------~~~~~~--~~~~~v-~~i~~sp~~~~l~~~-------------------~dg~I~iwd~~~~~~~~~~~~ 676 (790)
.... ...+.. .....+ ..++++|....++.+ ..+.|.-.|.++|+..=.+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 3210 000000 000111 234556655444431 124477788889988766654
Q ss_pred CCCC-------CCeEEEEEec-CCC---EEEEEEcCCeEEEEECCCCeEEEE
Q 003871 677 DKMD-------LPITYATYSC-DGK---CIYVSCKSGHVKVFDTSTLELRCQ 717 (790)
Q Consensus 677 ~~h~-------~~v~~l~~s~-dg~---~l~sgs~dg~i~vwd~~~~~~~~~ 717 (790)
.+|+ ....-+.+.. +|+ .++.++.+|.++++|.++|+.+..
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 3331 1112222333 563 789999999999999999988754
No 388
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.63 E-value=0.87 Score=45.50 Aligned_cols=185 Identities=14% Similarity=0.131 Sum_probs=110.1
Q ss_pred CCeEEEEe-c-CcEEEEec-C--CeEEEEECCCCcEEEEEcCCCC-CeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEE
Q 003871 507 DSISCFAL-R-GSHLFSAS-G--GKISIFSLETFQTLATFANPPP-IATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 580 (790)
Q Consensus 507 ~~V~~l~~-s-~~~l~s~s-d--g~I~vwd~~~~~~~~~~~~~~~-~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~ 580 (790)
.-...+.| . |.++-+.+ - ..|+.+|+.+++......-... ---.++...+....-.-.++...+||..+-+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEE
Confidence 34567888 4 55555555 3 4899999999998776653322 1234444433333444578899999999998888
Q ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCc
Q 003871 581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ 659 (790)
Q Consensus 581 ~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~ 659 (790)
.+.- .+.=..++ .|++.|+.......++++|..+.+......+. .... +...++-+.+- +|...|-- ....
T Consensus 125 ~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~---~~g~-pv~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 125 TFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT---DNGR-PVSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E---ETTE-E---EEEEEEE-TTEEEEEETTSSE
T ss_pred EEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE---ECCE-ECCCcEeEEEE-cCEEEEEeCCCCe
Confidence 8753 34556666 46777777777789999999885544332222 1111 11356667776 45444434 6778
Q ss_pred EEEEECCCCceeeeecCC----------C---CCCCeEEEEEecCCCEEEEEE
Q 003871 660 IDVYEAPTLNHTSQLVPD----------K---MDLPITYATYSCDGKCIYVSC 699 (790)
Q Consensus 660 I~iwd~~~~~~~~~~~~~----------~---h~~~v~~l~~s~dg~~l~sgs 699 (790)
|...|..+|+.+..+... . .....+.+|+.|..+.+...|
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 999999999987754210 0 135678999998776555444
No 389
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.56 E-value=0.12 Score=43.91 Aligned_cols=97 Identities=16% Similarity=0.225 Sum_probs=66.0
Q ss_pred eEEEEec------CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEE
Q 003871 509 ISCFALR------GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK 581 (790)
Q Consensus 509 V~~l~~s------~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~ 581 (790)
|+++++. .+.|++|+ |..|++|+-+ ..+..+. ....|++++-...+.++.|..+|+|-+|+-. ..+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeee
Confidence 5566665 25688888 8999999854 5666665 3556777776665699999999999999853 23344
Q ss_pred EcCCCCCEEEEEEeC-C--C-CEEEEEeCCCcEE
Q 003871 582 LKGHQNRITCLAYSL-S--L-NVLVSSGADAQLC 611 (790)
Q Consensus 582 l~~h~~~v~~l~~sp-d--g-~~l~s~s~dg~I~ 611 (790)
.+.. ..+.++++.. + | .-|++|-.+|.|-
T Consensus 77 iKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4432 3366665543 3 3 3588888888774
No 390
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.56 E-value=0.49 Score=45.50 Aligned_cols=150 Identities=11% Similarity=0.024 Sum_probs=87.5
Q ss_pred CCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCC--------CCCEEEEEEeCCCCEEE-EEeCCCcEEEEE--
Q 003871 546 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH--------QNRITCLAYSLSLNVLV-SSGADAQLCVWD-- 614 (790)
Q Consensus 546 ~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h--------~~~v~~l~~spdg~~l~-s~s~dg~I~vwd-- 614 (790)
.+.+.-..+|+|....|...-.-..+....|....-+.+| -+--+.++|+.|.+.+. +-+.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd 188 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD 188 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecC
Confidence 3456677889992244432211112222222222222222 23346789988776654 455677887787
Q ss_pred CCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEe-cCC
Q 003871 615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDG 692 (790)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s-~dg 692 (790)
..+|.....+.+..+........-..-.+++..+|.+.++. ..++|...|..+|+.+.++..+ ...|+++||. ++-
T Consensus 189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgGkn~ 266 (310)
T KOG4499|consen 189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGGKNL 266 (310)
T ss_pred CCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecCCCc
Confidence 66776554444443333111000123345666778777765 7788999999999999998764 7889999997 333
Q ss_pred CEEEE
Q 003871 693 KCIYV 697 (790)
Q Consensus 693 ~~l~s 697 (790)
..+++
T Consensus 267 d~~yv 271 (310)
T KOG4499|consen 267 DILYV 271 (310)
T ss_pred cEEEE
Confidence 44443
No 391
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.54 E-value=0.25 Score=56.32 Aligned_cols=224 Identities=16% Similarity=0.128 Sum_probs=117.7
Q ss_pred CeEEEEECCCCcEEEEEcCCCC-CeEEEEEcCCC-eEEEEeCC-C-----cEEEEeCCCCceEEEEcC-CCCCEEEEEEe
Q 003871 525 GKISIFSLETFQTLATFANPPP-IATYFILLPQD-LFAFGFDD-S-----SILVHCPCTKKTKAKLKG-HQNRITCLAYS 595 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~-~v~~l~~s~~g-~l~sgs~d-g-----~I~iwd~~~~~~~~~l~~-h~~~v~~l~~s 595 (790)
..+..||..+++......-... .-.+++.. +| ..++|+.| | ++..||..+++-.. +.. ...+...-.-.
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEE
Confidence 4688899887744332221222 22334443 45 77888888 3 68889988776332 211 11111111112
Q ss_pred CCCCEEEEEeCCCc-----EEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeC------CcEEEE
Q 003871 596 LSLNVLVSSGADAQ-----LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE------GQIDVY 663 (790)
Q Consensus 596 pdg~~l~s~s~dg~-----I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~d------g~I~iw 663 (790)
-+|...|+||.||. |-.||..+.+- ..+..+.... ...... .-+|+..++ |.+ .++..|
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W---~~va~m~~~r----~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~Y 449 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKW---TPVAPMLTRR----SGHGVA--VLGGKLYIIGGGDGSSNCLNSVECY 449 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcc---cccCCCCcce----eeeEEE--EECCEEEEEcCcCCCccccceEEEE
Confidence 26788899999864 77888877432 1121111111 111112 224555555 333 347889
Q ss_pred ECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEEEEeccccccCCCCcccccceEEE
Q 003871 664 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 738 (790)
Q Consensus 664 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg-----~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 738 (790)
|..+.+-...-.-. ......-.-.-++...+.||.|+ +|..||..+.+-...-.. .+....+. .+
T Consensus 450 DP~t~~W~~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m------~~~rs~~g--~~ 519 (571)
T KOG4441|consen 450 DPETNTWTLIAPMN--TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM------TSPRSAVG--VV 519 (571)
T ss_pred cCCCCceeecCCcc--cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC------cccccccc--EE
Confidence 98876543221111 11111112234677788888776 377888887764433110 01011121 12
Q ss_pred EEecCCCCEEEEEeCCC-----cEEEEecCCCccccccCCC
Q 003871 739 AAHPLEPNRIALGLTNG-----RVHVIEPLESEVEWGKLPF 774 (790)
Q Consensus 739 ~~sp~d~~~las~s~Dg-----~i~iW~~~~~~~~w~~~~~ 774 (790)
.. ++...+.||.|| +|-.||+.+.+ |...++
T Consensus 520 ~~---~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 520 VL---GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred EE---CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 11 577888898886 57788887764 876554
No 392
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.012 Score=63.94 Aligned_cols=93 Identities=11% Similarity=0.147 Sum_probs=71.9
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeE-EEEEeCCCCEEEEE-eCCcEEEEE
Q 003871 587 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN-HIQFHPDQIHLLSI-HEGQIDVYE 664 (790)
Q Consensus 587 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~-~i~~sp~~~~l~~~-~dg~I~iwd 664 (790)
..+.-+.|+|.-..+|.+..+|.|.+..+.- . .+.+++... ..++ +++|.|||+.||+| .||+|++.|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-q-----Rlwtip~p~----~~v~~sL~W~~DGkllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW-Q-----RLWTIPIPG----ENVTASLCWRPDGKLLAVGFKDGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc-c-----eeEeccCCC----CccceeeeecCCCCEEEEEecCCeEEEEE
Confidence 4577899999999999999999999888873 2 333344222 2455 99999999999998 899999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEec
Q 003871 665 APTLNHTSQLVPDKMDLPITYATYSC 690 (790)
Q Consensus 665 ~~~~~~~~~~~~~~h~~~v~~l~~s~ 690 (790)
+.++..+..+... -...|.++-|++
T Consensus 91 ve~~~~l~~~~~s-~e~~is~~~w~~ 115 (665)
T KOG4640|consen 91 VEKGGRLVSFLFS-VETDISKGIWDR 115 (665)
T ss_pred ccCCCceeccccc-cccchheeeccc
Confidence 9999888774221 266788888863
No 393
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.42 E-value=0.0093 Score=39.36 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=33.1
Q ss_pred CcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 003871 535 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 572 (790)
Q Consensus 535 ~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd 572 (790)
+++...+..|...|.++.|++++ .+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566777788899999999999 999999999999996
No 394
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.41 E-value=0.0054 Score=58.42 Aligned_cols=104 Identities=7% Similarity=0.007 Sum_probs=59.9
Q ss_pred CCEEEEE-eCCcEEEEECCC-CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCC
Q 003871 649 QIHLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 726 (790)
Q Consensus 649 ~~~l~~~-~dg~I~iwd~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~ 726 (790)
+.-+++| .+|.|++|...- +.....+.. ....-...+.-..++.+.++++.||.|+.|++.-++.+....
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g------- 141 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG------- 141 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhc-ccccceeccccccccceeEEeccCCceeeeccccCceeeeec-------
Confidence 4556665 899999998752 111111111 111122223333456789999999999999999988776653
Q ss_pred CCcc-cccceEEEEEecCCCCEEEEE--eCCCcEEEEecCC
Q 003871 727 GTIS-LELYPLVIAAHPLEPNRIALG--LTNGRVHVIEPLE 764 (790)
Q Consensus 727 gh~~-~~v~~~~v~~sp~d~~~las~--s~Dg~i~iW~~~~ 764 (790)
+|. .++. ....+. .+..++.+ |.|..++.|++..
T Consensus 142 -~h~~~~~e--~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 142 -QHNFESGE--ELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred -cccCCCcc--eeEEec-CCceEEeeccccchhhhhcchhh
Confidence 323 2222 222233 34566666 6666666666643
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.35 E-value=1.6 Score=45.20 Aligned_cols=278 Identities=13% Similarity=0.054 Sum_probs=126.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEE
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 519 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l 519 (790)
...+..|.|..+..-.++ +..+.| +...++.. -|....... .....-...++.|. +..+
T Consensus 16 ~~~l~dV~F~d~~~G~~V-G~~g~i--l~T~DGG~------------tW~~~~~~~-----~~~~~~~l~~I~f~~~~g~ 75 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAV-GAYGTI--LKTTDGGK------------TWQPVSLDL-----DNPFDYHLNSISFDGNEGW 75 (302)
T ss_dssp SS-EEEEEESSSS-EEEE-ETTTEE--EEESSTTS------------S-EE----------S-----EEEEEEEETTEEE
T ss_pred CCceEEEEEecCCEEEEE-ecCCEE--EEECCCCc------------cccccccCC-----CccceeeEEEEEecCCceE
Confidence 568899999955554444 555643 33333221 143221100 00112345677777 5455
Q ss_pred EEecCCeEEEEECCCCcEEEEEc---CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEE-EcCCCCCEEEEEEe
Q 003871 520 FSASGGKISIFSLETFQTLATFA---NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYS 595 (790)
Q Consensus 520 ~s~sdg~I~vwd~~~~~~~~~~~---~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~-l~~h~~~v~~l~~s 595 (790)
++|..+. .+...+.|+.-..+. ........+....++....++..|.|+.-. +.|+.-+. ...-.+.+..+..+
T Consensus 76 ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~ 153 (302)
T PF14870_consen 76 IVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS 153 (302)
T ss_dssp EEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-
T ss_pred EEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC
Confidence 5555554 233333343333321 112233334443444333334556554332 33443332 34455778899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEEC-CCCceeee-
Q 003871 596 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA-PTLNHTSQ- 673 (790)
Q Consensus 596 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~-~~~~~~~~- 673 (790)
+||+++++++.-....-||.-... ..+.. .... ..|.++.|+|++...+++..|.|+.=+. .....-..
T Consensus 154 ~dG~~vavs~~G~~~~s~~~G~~~---w~~~~---r~~~---~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~ 224 (302)
T PF14870_consen 154 SDGRYVAVSSRGNFYSSWDPGQTT---WQPHN---RNSS---RRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEP 224 (302)
T ss_dssp TTS-EEEEETTSSEEEEE-TT-SS----EEEE-----SS---S-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---
T ss_pred CCCcEEEEECcccEEEEecCCCcc---ceEEc---cCcc---ceehhceecCCCCEEEEeCCcEEEEccCCCCccccccc
Confidence 999999888766666678764311 11111 1111 5899999999998888888888888772 22221111
Q ss_pred -ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEe
Q 003871 674 -LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 752 (790)
Q Consensus 674 -~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s 752 (790)
.........+..++|.+++...++|+ .|.+ +...+.|+-=..-.... ......+ .+.|.+ ..+-+| .+
T Consensus 225 ~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~-----~~~~n~~--~i~f~~-~~~gf~-lG 293 (302)
T PF14870_consen 225 IIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGE-----NVPSNLY--RIVFVN-PDKGFV-LG 293 (302)
T ss_dssp B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGT-----TSSS-----EEEEEE-TTEEEE-E-
T ss_pred cCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECcccc-----CCCCceE--EEEEcC-CCceEE-EC
Confidence 11111245589999999877777655 4544 34555665433322110 0122455 888876 444444 45
Q ss_pred CCCcEEEE
Q 003871 753 TNGRVHVI 760 (790)
Q Consensus 753 ~Dg~i~iW 760 (790)
.+|.|--|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 78877654
No 396
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.21 E-value=0.29 Score=48.85 Aligned_cols=168 Identities=8% Similarity=0.086 Sum_probs=107.7
Q ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcE
Q 003871 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 660 (790)
Q Consensus 582 l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I 660 (790)
+.|-...+.++.|+|+.+.|.+......-.|+=...|+.+...++.- - ...-.|.+..+|.+.++- .++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g---~-----~DpE~Ieyig~n~fvi~dER~~~l 152 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG---F-----SDPETIEYIGGNQFVIVDERDRAL 152 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc---c-----CChhHeEEecCCEEEEEehhcceE
Confidence 34545569999999999998888777776677666666666555552 1 234457777788777775 78888
Q ss_pred EEEECCCCceeee-----ec--CCCC-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCc---
Q 003871 661 DVYEAPTLNHTSQ-----LV--PDKM-DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI--- 729 (790)
Q Consensus 661 ~iwd~~~~~~~~~-----~~--~~~h-~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~--- 729 (790)
+++.+.....+.. +. ...+ +...-.++|+|..+.+..+-+-.-+.||.+..+..- +..+... ++.
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~--l~~~~~~--~~~~~~ 228 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS--LSVHASL--DPTADR 228 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc--ccccccc--Cccccc
Confidence 8887765432221 11 1112 567889999999999988888877777776633211 1111000 111
Q ss_pred ---ccccceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 730 ---SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 730 ---~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
-..+. ++.|++..+..|+-+.+++.+.-.+..
T Consensus 229 ~~f~~DvS--gl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 229 DLFVLDVS--GLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ceEeeccc--cceecCCCCcEEEEecCCceEEEEecC
Confidence 11344 788888777788887777777666653
No 397
>PHA02713 hypothetical protein; Provisional
Probab=96.16 E-value=0.42 Score=54.61 Aligned_cols=185 Identities=13% Similarity=0.094 Sum_probs=92.1
Q ss_pred CcEEEEec-C------CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCCceEE--
Q 003871 516 GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKA-- 580 (790)
Q Consensus 516 ~~~l~s~s-d------g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg-----~I~iwd~~~~~~~~-- 580 (790)
+...+.|+ + ..+..||..+......-.-+...-......-+| ..+.|+.++ ++..||..+++-..
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 66666666 3 247788887764321111111111111222356 667777654 48889988764321
Q ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCCC-----------------------cEEEEECCCCceeeceeeeeeccCCCCCC
Q 003871 581 KLKGHQNRITCLAYSLSLNVLVSSGADA-----------------------QLCVWDAVGWKKLCSKFLHSFQTGLVPET 637 (790)
Q Consensus 581 ~l~~h~~~v~~l~~spdg~~l~s~s~dg-----------------------~I~vwd~~~~~~~~~~~l~~~~~~~~~~~ 637 (790)
.+.........+ .-+|+..+.||.++ .+..||..+.+- ..+..++....
T Consensus 384 ~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W---~~v~~m~~~r~--- 455 (557)
T PHA02713 384 DMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW---ETLPNFWTGTI--- 455 (557)
T ss_pred CCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE---eecCCCCcccc---
Confidence 111111111122 23677778787652 477888877432 12222222221
Q ss_pred CCeEEEEEeCCCCEEEEE-eC------CcEEEEECCC-Cce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcCC--eEE
Q 003871 638 TIVNHIQFHPDQIHLLSI-HE------GQIDVYEAPT-LNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG--HVK 705 (790)
Q Consensus 638 ~~v~~i~~sp~~~~l~~~-~d------g~I~iwd~~~-~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg--~i~ 705 (790)
.. +++. -+++..++| .+ ..+..||..+ .+- +..+.. .......+ .-+|+..++||.|| .+.
T Consensus 456 -~~-~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~--~r~~~~~~--~~~~~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 456 -RP-GVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES--RLSALHTI--LHDNTIMMLHCYESYMLQD 528 (557)
T ss_pred -cC-cEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc--ccccceeE--EECCEEEEEeeecceeehh
Confidence 11 1222 235555554 32 2367899886 332 222211 11112222 23788888999888 777
Q ss_pred EEECCCCeEE
Q 003871 706 VFDTSTLELR 715 (790)
Q Consensus 706 vwd~~~~~~~ 715 (790)
.||..+.+-.
T Consensus 529 ~yd~~~~~W~ 538 (557)
T PHA02713 529 TFNVYTYEWN 538 (557)
T ss_pred hcCccccccc
Confidence 8888776543
No 398
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.03 E-value=1 Score=53.00 Aligned_cols=209 Identities=14% Similarity=0.076 Sum_probs=117.2
Q ss_pred CeEEEEeCCCcEEEEeCCCCceEEEEcCCCCC--------EEEEEEeC----------------CCCEEEEEeCCCcEEE
Q 003871 557 DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNR--------ITCLAYSL----------------SLNVLVSSGADAQLCV 612 (790)
Q Consensus 557 g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~--------v~~l~~sp----------------dg~~l~s~s~dg~I~v 612 (790)
+.++.++.++.|+-.|..+|+.+.++...... ...+++.. .+..++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 37777888889999999999888776532210 12233321 3347888899999999
Q ss_pred EECCCCceeeceeee---eeccCCCCCCCCeEEEEEeC---CCCEEEEE--e--------CCcEEEEECCCCceeeeecC
Q 003871 613 WDAVGWKKLCSKFLH---SFQTGLVPETTIVNHIQFHP---DQIHLLSI--H--------EGQIDVYEAPTLNHTSQLVP 676 (790)
Q Consensus 613 wd~~~~~~~~~~~l~---~~~~~~~~~~~~v~~i~~sp---~~~~l~~~--~--------dg~I~iwd~~~~~~~~~~~~ 676 (790)
.|.++|+........ .+..+.......-..+.-.| ++..++.+ . +|.|+-+|.++|+.+=.+..
T Consensus 275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 275 LDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred EECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence 999998765321110 00000000000000111111 33333322 1 47799999999998766542
Q ss_pred CC---------------CCCCe-EEEEEecCCCEEEEEE------------------cCCeEEEEECCCCeEEEEecccc
Q 003871 677 DK---------------MDLPI-TYATYSCDGKCIYVSC------------------KSGHVKVFDTSTLELRCQINLTA 722 (790)
Q Consensus 677 ~~---------------h~~~v-~~l~~s~dg~~l~sgs------------------~dg~i~vwd~~~~~~~~~~~~~~ 722 (790)
.. ....+ ..++++++...++.+. ..+.|.-.|.+||+.+-.+...
T Consensus 355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~- 433 (764)
T TIGR03074 355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV- 433 (764)
T ss_pred CCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc-
Confidence 10 00111 2345555555544322 1356777889999888776531
Q ss_pred ccCCCCccccc-----ceEEEEEecCCCC---EEEEEeCCCcEEEEecCCCcccccc
Q 003871 723 YAQPGTISLEL-----YPLVIAAHPLEPN---RIALGLTNGRVHVIEPLESEVEWGK 771 (790)
Q Consensus 723 ~~~~gh~~~~v-----~~~~v~~sp~d~~---~las~s~Dg~i~iW~~~~~~~~w~~ 771 (790)
||+..- .++-+.+...+|+ .++.++.+|.+++.|..+|+..|..
T Consensus 434 -----~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 434 -----HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred -----CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 221100 0111112111443 7899999999999999999999864
No 399
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.02 Score=65.86 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=70.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeec
Q 003871 597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV 675 (790)
Q Consensus 597 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~ 675 (790)
.+..++.|++.|.+-..|+.+.- .++. ...+ ..++|++++|+.+|+.++.| .+|.|.+||...++..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL----~~~~--~ne~--v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNL----GPLH--QNER--VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhccc----chhh--cCCc--cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence 35578899999999999887621 1111 0111 11799999999999999998 89999999999999888876
Q ss_pred CCCC-CCCeEEEEEecCCCEEEEEEcCCe
Q 003871 676 PDKM-DLPITYATYSCDGKCIYVSCKSGH 703 (790)
Q Consensus 676 ~~~h-~~~v~~l~~s~dg~~l~sgs~dg~ 703 (790)
..++ ...+..+.+..++..++++...|.
T Consensus 170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence 5322 233444555566677888877776
No 400
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.02 E-value=2 Score=43.21 Aligned_cols=176 Identities=9% Similarity=0.080 Sum_probs=107.5
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 003871 542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619 (790)
Q Consensus 542 ~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h-~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 619 (790)
.+....++++.|+|+. .|++..+...-.++=...|+.+.++.-. -...-++.+..+|++.++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 3445569999999999 6666666665555555668888876431 2234578888888888888888998888776542
Q ss_pred e-eeceeeeeeccCCCCC-CCCeEEEEEeCCCCEEEEEe-CCcEEEEECCCCc-ee--eeecCCC-----CCCCeEEEEE
Q 003871 620 K-LCSKFLHSFQTGLVPE-TTIVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLN-HT--SQLVPDK-----MDLPITYATY 688 (790)
Q Consensus 620 ~-~~~~~l~~~~~~~~~~-~~~v~~i~~sp~~~~l~~~~-dg~I~iwd~~~~~-~~--~~~~~~~-----h~~~v~~l~~ 688 (790)
. ......+ ++-+..++ ....-.++|+|....|.+.. -+-+.||.+..+. .+ ....... .-..|.++.|
T Consensus 162 ~~~~~~~~~-i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 162 TVISAKVQK-IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred cEEeccceE-EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 1 1111111 22211111 25678899999988888873 3445555554222 11 1100000 0235677888
Q ss_pred ec-CCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003871 689 SC-DGKCIYVSCKSGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 689 s~-dg~~l~sgs~dg~i~vwd~~~~~~~~~~~ 719 (790)
++ .+.+|+-+.+++.+.-.|.... .+..+.
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~ls 271 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE-VIELLS 271 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC-eeeeEE
Confidence 85 5677788888888888887654 344443
No 401
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.92 E-value=0.88 Score=51.97 Aligned_cols=193 Identities=17% Similarity=0.106 Sum_probs=100.2
Q ss_pred eEEEEec-CcEEEEec-C-C-----eEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC-----cEEEEeCC
Q 003871 509 ISCFALR-GSHLFSAS-G-G-----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPC 574 (790)
Q Consensus 509 V~~l~~s-~~~l~s~s-d-g-----~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg-----~I~iwd~~ 574 (790)
-.+++.. |...++|+ + | .+..||..+++-...-.-.......-...-+| ..|+|+.|| +|..||..
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence 4455555 66677777 6 3 57788888766433111111111111112256 888899887 57888887
Q ss_pred CCceEEEEcCCCCCEEEEEE-eCCCCEEEEEeCCC------cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeC
Q 003871 575 TKKTKAKLKGHQNRITCLAY-SLSLNVLVSSGADA------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 647 (790)
Q Consensus 575 ~~~~~~~l~~h~~~v~~l~~-spdg~~l~s~s~dg------~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp 647 (790)
+.+--.. ........+.+. .-+|+..++||.++ ++..||..++.-....++. .... . ..++.-
T Consensus 405 ~~~W~~v-a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~---~~R~----~-~g~a~~- 474 (571)
T KOG4441|consen 405 TNKWTPV-APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN---TRRS----G-FGVAVL- 474 (571)
T ss_pred CCccccc-CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc---cccc----c-ceEEEE-
Confidence 6543211 111112222222 23678888888654 5788998885532222222 2211 1 123322
Q ss_pred CCCEEEE-EeCC-----cEEEEECCCCceeeeecCCCCCCCeEEEEEe-cCCCEEEEEEcCC-----eEEEEECCCCeE
Q 003871 648 DQIHLLS-IHEG-----QIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKSG-----HVKVFDTSTLEL 714 (790)
Q Consensus 648 ~~~~l~~-~~dg-----~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~sgs~dg-----~i~vwd~~~~~~ 714 (790)
++...++ |.|+ +|..||..+.+-...- .. ..+...+... -+++..++|+.|| +|..||..+.+-
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~-~m--~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVA-PM--TSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCceeEcc-cC--ccccccccEEEECCEEEEEecccCccccceeEEcCCCCCce
Confidence 4455555 4554 3788998876644331 11 1222222222 3566777888774 466777666543
No 402
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.90 E-value=0.02 Score=40.60 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=31.1
Q ss_pred ccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccccc
Q 003871 732 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 770 (790)
Q Consensus 732 ~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~ 770 (790)
.|. .++|+| ..+++|.++.||.|.++++ +++..|.
T Consensus 13 ~v~--~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qriw~ 47 (47)
T PF12894_consen 13 RVS--CMSWCP-TMDLIALGTEDGEVLVYRL-NWQRIWS 47 (47)
T ss_pred cEE--EEEECC-CCCEEEEEECCCeEEEEEC-CCcCccC
Confidence 455 999999 8999999999999999999 8887774
No 403
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.83 E-value=5.3 Score=46.67 Aligned_cols=323 Identities=11% Similarity=0.007 Sum_probs=157.6
Q ss_pred CCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccc
Q 003871 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 477 (790)
Q Consensus 398 ~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~ 477 (790)
++|... ..|..+|.+...-+.-..++..-..+++..-|..+-..|+.+-++| .+.+|+.-|.-.+-.+.+....
T Consensus 267 ~~~~~y----Ll~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng-~lFvGS~~gdSqLi~L~~e~d~- 340 (1096)
T KOG1897|consen 267 LQGSRY----LLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG-VLFVGSRFGDSQLIKLNTEPDV- 340 (1096)
T ss_pred CCccEE----EEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc-eEEEeccCCceeeEEccccCCC-
Confidence 556666 7777888776655541111111101111111334555667777776 5888888665566555543220
Q ss_pred cccccccccccccCCCceeeeecccCCCCCCeEEEEec------CcEEEEec----CCeEEEEECCCCc-EEE--EEcCC
Q 003871 478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS----GGKISIFSLETFQ-TLA--TFANP 544 (790)
Q Consensus 478 g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s------~~~l~s~s----dg~I~vwd~~~~~-~~~--~~~~~ 544 (790)
|+.. ..+... ..-+||..++.. ...+++++ ||++++..-.-+- ... .+.+
T Consensus 341 gsy~-------------~ilet~---~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G- 403 (1096)
T KOG1897|consen 341 GSYV-------------VILETF---VNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG- 403 (1096)
T ss_pred Cchh-------------hhhhhc---ccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-
Confidence 0000 011111 244677777776 33455554 6999998653221 112 2223
Q ss_pred CCCeEEEE--EcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCc
Q 003871 545 PPIATYFI--LLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWK 619 (790)
Q Consensus 545 ~~~v~~l~--~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~ 619 (790)
-..++.+. +.+.- +++.+-.+ .-++..+...-......+.......+..|- .|+.|+=.. ...||+++-.. .
T Consensus 404 ikg~w~lk~~v~~~~d~ylvlsf~~-eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~~-~ 480 (1096)
T KOG1897|consen 404 IKGMWSLKSMVDENYDNYLVLSFIS-ETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSAG-L 480 (1096)
T ss_pred ccceeEeeccccccCCcEEEEEecc-ceEEEEEccceEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcchh-h
Confidence 33456666 33332 55444333 334444432211111222223333343333 334433332 23577776552 1
Q ss_pred eeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC------
Q 003871 620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG------ 692 (790)
Q Consensus 620 ~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg------ 692 (790)
.....+. +.++..+.+-+...++. +.++.+...++..+.. +..........|.|+.++|-|
T Consensus 481 ~~~W~~p-----------~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l-~e~~~~~~e~evaCLDisp~~d~~~~s 548 (1096)
T KOG1897|consen 481 RSEWRPP-----------GKITIGVVSANASQVVVAGGGLALFYLEIEDGGL-REVSHKEFEYEVACLDISPLGDAPNKS 548 (1096)
T ss_pred hhcccCC-----------CceEEEEEeecceEEEEecCccEEEEEEeeccce-eeeeeheecceeEEEecccCCCCCCcc
Confidence 1111111 23444334444445555 4556666667665552 222222236789999999742
Q ss_pred CEEEEEEcCCeEEEE-ECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 693 KCIYVSCKSGHVKVF-DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 693 ~~l~sgs~dg~i~vw-d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
++++.|..+..+.+. -......++..... +. .-+-.++-..+-. |..+|.++..||.+.-+.+...
T Consensus 549 ~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~-----~~-~iPRSIl~~~~e~-d~~yLlvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 549 RLLAVGLWSDISMILTFLPDLILITHEQLS-----GE-IIPRSILLTTFEG-DIHYLLVALGDGALLYFVLDIN 615 (1096)
T ss_pred eEEEEEeecceEEEEEECCCcceeeeeccC-----CC-ccchheeeEEeec-cceEEEEEcCCceEEEEEEEcc
Confidence 378888876655443 33444444333211 10 1122244555655 6789999999999887665443
No 404
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.59 E-value=4.3 Score=43.94 Aligned_cols=81 Identities=9% Similarity=0.014 Sum_probs=55.0
Q ss_pred CCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecC-C----------------CE-EEEE
Q 003871 638 TIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-G----------------KC-IYVS 698 (790)
Q Consensus 638 ~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d-g----------------~~-l~sg 698 (790)
..+.+++.+|++++.|+. .=|.|.++|+.++..++.+++-. +..+.-+..... . .+ ++-+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR-dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR-DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc-cceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 357789999999888886 55889999999998888776532 222221111111 1 12 3345
Q ss_pred EcCCeEEEEECCCCeEEEEec
Q 003871 699 CKSGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 699 s~dg~i~vwd~~~~~~~~~~~ 719 (790)
-.-|.|.||.++.|..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 667999999999998777664
No 405
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.58 E-value=3.4 Score=42.73 Aligned_cols=159 Identities=9% Similarity=0.013 Sum_probs=81.2
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q 003871 542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 620 (790)
Q Consensus 542 ~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 620 (790)
......+..+..+++| ++++++......-||.-...-...-+.-+.+|.++.|+|++...+.+ ..|.|++=+......
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 4445678888889999 77777655555567754322222223356789999999998776644 788888877222111
Q ss_pred eeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecC-CCCCCCeEEEEEecCCCEEEEEE
Q 003871 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSC 699 (790)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs 699 (790)
...+++..+.... ..+..++|.+++...+++..|.+. .....|+.=+.-.. ..-...++.+.|.++.+-++.|
T Consensus 220 ~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG- 293 (302)
T PF14870_consen 220 TWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG- 293 (302)
T ss_dssp EE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred ccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-
Confidence 1111111111111 358999999999888888777543 34445554333221 1124568899998776655554
Q ss_pred cCCeEEEE
Q 003871 700 KSGHVKVF 707 (790)
Q Consensus 700 ~dg~i~vw 707 (790)
.+|.|--|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 67776544
No 406
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=0.047 Score=63.04 Aligned_cols=104 Identities=13% Similarity=0.200 Sum_probs=72.3
Q ss_pred CCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCC
Q 003871 649 QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG 727 (790)
Q Consensus 649 ~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~g 727 (790)
+..++.| +.|.+...|.... .-.-..+..-.++|++++|+.+|+.++.|-.+|.|.+||+..++..+.+..+ |
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-----~ 172 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-----G 172 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-----C
Confidence 4466665 6677888887542 2111222223789999999999999999999999999999999988887643 3
Q ss_pred CcccccceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 728 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 728 h~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
+.. ..++.+.+.. ++..+.++..-|. +|...
T Consensus 173 ap~--t~vi~v~~t~-~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 173 APV--TGVIFVGRTS-QNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred Ccc--ceEEEEEEeC-CCcEEEEccCCCc--eEEEE
Confidence 322 2244666666 4566777766665 66654
No 407
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.41 E-value=2.8 Score=40.56 Aligned_cols=204 Identities=19% Similarity=0.196 Sum_probs=108.2
Q ss_pred CCeEEEEECCCCcEEE-EEcCCCCCeEEEEEcC-CC--eEEEE-eCCCcEEEEeCCCC--ceEEEE---cC--CCCCEEE
Q 003871 524 GGKISIFSLETFQTLA-TFANPPPIATYFILLP-QD--LFAFG-FDDSSILVHCPCTK--KTKAKL---KG--HQNRITC 591 (790)
Q Consensus 524 dg~I~vwd~~~~~~~~-~~~~~~~~v~~l~~s~-~g--~l~sg-s~dg~I~iwd~~~~--~~~~~l---~~--h~~~v~~ 591 (790)
.|.|.-||+.+.+..+ ++.+.. ..++.+-- ++ .++++ +..-.|.-||.... ....++ .. ...+.+.
T Consensus 36 ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~ND 113 (310)
T KOG4499|consen 36 AGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLND 113 (310)
T ss_pred cCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhccccc
Confidence 4667779988765443 233221 33333322 22 33333 32223445663321 222221 11 2345667
Q ss_pred EEEeCCCCEEEEEeCC---------CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE--EeCCcE
Q 003871 592 LAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQI 660 (790)
Q Consensus 592 l~~spdg~~l~s~s~d---------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~--~~dg~I 660 (790)
-..+|+|++.+-.-.| |.++.|-... .+..+.. .- +.-+.++|+.+.+.+.. +.+-.|
T Consensus 114 gkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-------~v~~i~~-~v---~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 114 GKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-------QVELIWN-CV---GISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred CccCCCCceeeeeeccccccccccccEEEEeccCC-------Cceeeeh-hc---cCCccccccccCcEEEEEccCceEE
Confidence 7789999984422222 2344443322 0110101 00 23456899988887776 466677
Q ss_pred EEEE--CCCCce-----eeeecCC--CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCccc
Q 003871 661 DVYE--APTLNH-----TSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 731 (790)
Q Consensus 661 ~iwd--~~~~~~-----~~~~~~~--~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~ 731 (790)
.-|| ..+|.. +-.+... ......-.++...+|++.++.-..++|...|..+|+.+..+... ..
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--------t~ 254 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--------TP 254 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--------CC
Confidence 6677 555532 2112110 01222345666778898888888999999999999999888743 22
Q ss_pred ccceEEEEEecCCCCEEEE
Q 003871 732 ELYPLVIAAHPLEPNRIAL 750 (790)
Q Consensus 732 ~v~~~~v~~sp~d~~~las 750 (790)
.++ +++|-..+-..+++
T Consensus 255 qit--sccFgGkn~d~~yv 271 (310)
T KOG4499|consen 255 QIT--SCCFGGKNLDILYV 271 (310)
T ss_pred ceE--EEEecCCCccEEEE
Confidence 445 88986533334443
No 408
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.34 E-value=3.7 Score=41.61 Aligned_cols=146 Identities=13% Similarity=0.076 Sum_probs=87.1
Q ss_pred CeEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE-CCCCcee
Q 003871 547 IATYFILLPQD-LFAFGF---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD-AVGWKKL 621 (790)
Q Consensus 547 ~v~~l~~s~~g-~l~sgs---~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd-~~~~~~~ 621 (790)
.+.+.++++++ .++... ....++++.... .....+.+ ..+....|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-cceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 67899999999 555444 233566655432 22222233 3678889999988777777677777774 3332211
Q ss_pred eceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE----eCCcEEEEECC---CCceee-----eecCCCCCCCeEEEEEe
Q 003871 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDVYEAP---TLNHTS-----QLVPDKMDLPITYATYS 689 (790)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~----~dg~I~iwd~~---~~~~~~-----~~~~~~h~~~v~~l~~s 689 (790)
...+. ..... +.|+++.+||||..++.- .++.|.+--+. .+.... .+.. .....+..++|.
T Consensus 102 -~~~v~-~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~ 174 (253)
T PF10647_consen 102 -PVEVD-WPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWS 174 (253)
T ss_pred -eEEec-ccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeec
Confidence 11122 11111 279999999999999873 35667766543 221110 1110 124678999999
Q ss_pred cCCCEEEEEEcCC
Q 003871 690 CDGKCIYVSCKSG 702 (790)
Q Consensus 690 ~dg~~l~sgs~dg 702 (790)
+++.+++.+...+
T Consensus 175 ~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 175 DDSTLVVLGRSAG 187 (253)
T ss_pred CCCEEEEEeCCCC
Confidence 9999877666543
No 409
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.28 E-value=1.6 Score=44.27 Aligned_cols=151 Identities=19% Similarity=0.094 Sum_probs=84.8
Q ss_pred CEEEEEEeCCCCEEEEEe---CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEE
Q 003871 588 RITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 663 (790)
Q Consensus 588 ~v~~l~~spdg~~l~s~s---~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iw 663 (790)
.+.+.++++|++.+|... ....++++...... .....+ ..+....|++++...++. .+...+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~-------~~~~~g-----~~l~~PS~d~~g~~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV-------RPVLTG-----GSLTRPSWDPDGWVWTVDDGSGGVRVV 92 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc-------eeeccC-----CccccccccCCCCEEEEEcCCCceEEE
Confidence 688999999999887766 33456666554311 111122 367888999998777764 44445555
Q ss_pred -ECCCCceee-eecCCCCCCCeEEEEEecCCCEEEEEE---cCCeEEEEECC---CCeEEEEeccccccCCCCcccccce
Q 003871 664 -EAPTLNHTS-QLVPDKMDLPITYATYSCDGKCIYVSC---KSGHVKVFDTS---TLELRCQINLTAYAQPGTISLELYP 735 (790)
Q Consensus 664 -d~~~~~~~~-~~~~~~h~~~v~~l~~s~dg~~l~sgs---~dg~i~vwd~~---~~~~~~~~~~~~~~~~gh~~~~v~~ 735 (790)
+..++.... ..........|..+.+||||..++.-. .++.|++=-+. .+.......+..... .. ...+
T Consensus 93 ~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~-~~~v-- 168 (253)
T PF10647_consen 93 RDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PL-LSDV-- 168 (253)
T ss_pred EecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cc-cCcc--
Confidence 333333221 121111122899999999999877555 35777776554 231111111111111 10 2234
Q ss_pred EEEEEecCCCCEEEEEeCCC
Q 003871 736 LVIAAHPLEPNRIALGLTNG 755 (790)
Q Consensus 736 ~~v~~sp~d~~~las~s~Dg 755 (790)
.+++|.+ ++.+++.+...+
T Consensus 169 ~~v~W~~-~~~L~V~~~~~~ 187 (253)
T PF10647_consen 169 TDVAWSD-DSTLVVLGRSAG 187 (253)
T ss_pred eeeeecC-CCEEEEEeCCCC
Confidence 4999999 677666555443
No 410
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.12 E-value=2.9 Score=41.52 Aligned_cols=204 Identities=11% Similarity=0.008 Sum_probs=132.2
Q ss_pred eEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceee
Q 003871 548 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 626 (790)
Q Consensus 548 v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l 626 (790)
-..++-.||| .-+++...+.|--.|..+|+....--+....-..|...|||..-++-+.. .|.-.|-++.+.. ..
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt---~f 139 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT---RF 139 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE---Ee
Confidence 4567888999 88888888889999999998765544555566788899998876664433 5666677664422 22
Q ss_pred eeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 003871 627 HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 706 (790)
Q Consensus 627 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~v 706 (790)
. ++..|.. .......|.+.|.+-+++..|.---.|.. ...++.+... .....+.++..|||..-++.-.++.|-.
T Consensus 140 ~-lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa-~~~i~vfpaP-qG~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 140 P-LPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPA-RNVISVFPAP-QGGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred e-cccccCC--CcccceeeCCCccEEEeeccccceecCcc-cCceeeeccC-CCCCCcceEECCCCcEEEEeccccceEE
Confidence 2 3344433 57788999999998888644332222322 1233444333 3566788999999998888778888888
Q ss_pred EECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCcccccc
Q 003871 707 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 771 (790)
Q Consensus 707 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~ 771 (790)
.|..++.. .++... .+.+.+ .. .+--+| -|..-+|....+.+.-+|+.... |..
T Consensus 215 idp~~~~a-ev~p~P----~~~~~g-sR--riwsdp-ig~~wittwg~g~l~rfdPs~~s--W~e 268 (353)
T COG4257 215 IDPFAGHA-EVVPQP----NALKAG-SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTS--WIE 268 (353)
T ss_pred cccccCCc-ceecCC----Cccccc-cc--ccccCc-cCcEEEeccCCceeeEeCccccc--cee
Confidence 88887733 222211 121111 12 333345 57777777777888888887664 544
No 411
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.97 E-value=0.83 Score=51.74 Aligned_cols=114 Identities=10% Similarity=0.038 Sum_probs=75.3
Q ss_pred CeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEe--cCCCEEEEEEcCCeEEEEECC-----
Q 003871 639 IVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS--CDGKCIYVSCKSGHVKVFDTS----- 710 (790)
Q Consensus 639 ~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s--~dg~~l~sgs~dg~i~vwd~~----- 710 (790)
.++-+.-+.-++..++. ....+.|||.+.+.....-.- .....|.++.|. |+|+.+++.|-.+.|.+|--.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 44555555555555554 455699999988775433322 237889999987 799999999999999998532
Q ss_pred ----CCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 711 ----TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 711 ----~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
+...+..+... +++.++|. +..|.+ +|..++.+ ++.+.|++-.
T Consensus 110 ~~~p~w~~i~~i~i~-----~~T~h~Ig--ds~Wl~-~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDIS-----SHTPHPIG--DSIWLK-DGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEee-----cCCCCCcc--ceeEec-CCeEEEEe--CCEEEEECCC
Confidence 11233333322 34455677 899999 77665544 3578888753
No 412
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.89 E-value=6.6 Score=42.11 Aligned_cols=190 Identities=19% Similarity=0.149 Sum_probs=90.8
Q ss_pred CcEEEEec--CCeEEEEECCC----CcEEEEEcC---CC----CCeEEEEEcCCC-eEEEEe--CC----CcEEEEeCCC
Q 003871 516 GSHLFSAS--GGKISIFSLET----FQTLATFAN---PP----PIATYFILLPQD-LFAFGF--DD----SSILVHCPCT 575 (790)
Q Consensus 516 ~~~l~s~s--dg~I~vwd~~~----~~~~~~~~~---~~----~~v~~l~~s~~g-~l~sgs--~d----g~I~iwd~~~ 575 (790)
.++|+..+ .+.|.+.|+.+ .+..+.++. +. ..-..+-.-|+| .++++- .+ |.+.++|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 45677776 68999999974 344555542 10 122344556888 666643 33 3688899888
Q ss_pred CceEEEEcCC---CCCEEEEEEeCCCCEEEEEeC--------------------CCcEEEEECCCCceeeceeeeeeccC
Q 003871 576 KKTKAKLKGH---QNRITCLAYSLSLNVLVSSGA--------------------DAQLCVWDAVGWKKLCSKFLHSFQTG 632 (790)
Q Consensus 576 ~~~~~~l~~h---~~~v~~l~~spdg~~l~s~s~--------------------dg~I~vwd~~~~~~~~~~~l~~~~~~ 632 (790)
.+....+... ...-..+.|.|..+.++|... ..++.+||+.+.+. ++++.-+
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~-----~Q~idLg 241 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL-----LQTIDLG 241 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE-----EEEEES-
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE-----eeEEecC
Confidence 8887777542 234567888998888888642 35799999999543 3333333
Q ss_pred CCCCCCCeEEEEEeC--CCCEEEE--EeCCcEEEEEC-CCCc----eeeeecCCCC---------------CCCeEEEEE
Q 003871 633 LVPETTIVNHIQFHP--DQIHLLS--IHEGQIDVYEA-PTLN----HTSQLVPDKM---------------DLPITYATY 688 (790)
Q Consensus 633 ~~~~~~~v~~i~~sp--~~~~l~~--~~dg~I~iwd~-~~~~----~~~~~~~~~h---------------~~~v~~l~~ 688 (790)
... .....+.|.. +..+=++ .-.++|..|-- ..++ .+..+..... ..-|+.+..
T Consensus 242 ~~g--~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 242 EEG--QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp TTE--EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred CCC--CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 220 2355666654 3444443 23444544433 3332 1222211100 234799999
Q ss_pred ecCCCEEEEEEc-CCeEEEEECCCC
Q 003871 689 SCDGKCIYVSCK-SGHVKVFDTSTL 712 (790)
Q Consensus 689 s~dg~~l~sgs~-dg~i~vwd~~~~ 712 (790)
|.|.++|+.+.. +|.|+.||+...
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SST
T ss_pred ccCCCEEEEEcccCCcEEEEecCCC
Confidence 999999987664 899999999863
No 413
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=1.7 Score=41.18 Aligned_cols=180 Identities=13% Similarity=0.068 Sum_probs=100.7
Q ss_pred EEEec-CcEEEEec---CCeEEEEECCCCcEEEEEcCCCCCeEE--EEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcC
Q 003871 511 CFALR-GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATY--FILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG 584 (790)
Q Consensus 511 ~l~~s-~~~l~s~s---dg~I~vwd~~~~~~~~~~~~~~~~v~~--l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~ 584 (790)
.+.+. |.++.+.+ ...|++||+.+|+.+..-.-....+.. +.-..|....-.-.+|....+|.++-+++..+.
T Consensus 50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~- 128 (262)
T COG3823 50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS- 128 (262)
T ss_pred ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-
Confidence 45555 65666666 368999999999887765422222211 111112222333468888999998887776664
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEE
Q 003871 585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 663 (790)
Q Consensus 585 h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iw 663 (790)
..+.=..+ ..|++.|+.++...+++.-|.++-.... .++....+.. ...++-+.|- +|...|-- .+..|...
T Consensus 129 y~GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~--~v~VT~~g~p--v~~LNELE~V-dG~lyANVw~t~~I~rI 201 (262)
T COG3823 129 YEGEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELD--TVQVTDDGVP--VSKLNELEWV-DGELYANVWQTTRIARI 201 (262)
T ss_pred cCCcceee--ecCCcceEeeCCceEEEecCHHHhhhcc--eEEEEECCee--cccccceeee-ccEEEEeeeeecceEEE
Confidence 23333444 3456667777666778877877633222 2221111110 0223334443 45444432 55667777
Q ss_pred ECCCCceeeeecCC----------CCCCCeEEEEEecCC-CEEEEE
Q 003871 664 EAPTLNHTSQLVPD----------KMDLPITYATYSCDG-KCIYVS 698 (790)
Q Consensus 664 d~~~~~~~~~~~~~----------~h~~~v~~l~~s~dg-~~l~sg 698 (790)
|..+|+.+..+... .+....+.+++.|++ +++++|
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 77777776654321 234567889999887 555555
No 414
>PRK13684 Ycf48-like protein; Provisional
Probab=94.84 E-value=6.5 Score=41.75 Aligned_cols=179 Identities=12% Similarity=0.027 Sum_probs=95.0
Q ss_pred eCCCcEEEEeCCCCceEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCcEEE-EECCCCceeeceeeeeeccCCCCCCCCe
Q 003871 563 FDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCV-WDAVGWKKLCSKFLHSFQTGLVPETTIV 640 (790)
Q Consensus 563 s~dg~I~iwd~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~s~s~dg~I~v-wd~~~~~~~~~~~l~~~~~~~~~~~~~v 640 (790)
+..|.|..=+ +.|+.-..+. +..+.+.++.+.|++.+++++. .|.+.. +|-.. +. ...+. .... ..+
T Consensus 149 g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg-~t--W~~~~---~~~~---~~l 217 (334)
T PRK13684 149 TNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQ-TA--WTPHQ---RNSS---RRL 217 (334)
T ss_pred eccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceEEEEcCCCC-Ce--EEEee---CCCc---ccc
Confidence 3445443322 3344333332 2345788999999887665554 555543 22211 10 11111 1211 578
Q ss_pred EEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCC--CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 003871 641 NHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 641 ~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~ 718 (790)
+++.+.|+++.++++..|.+++=....|..-.....+ .....+..+.+.+++..+++ +.+|.+. .....|+--...
T Consensus 218 ~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~ 295 (334)
T PRK13684 218 QSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKD 295 (334)
T ss_pred eeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeEC
Confidence 9999999999888887777654333444332221111 11345788999998876554 4567665 344544432222
Q ss_pred ccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 719 NLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 719 ~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
.... +- ....+ .+.|.. ++..++ ++..|.|--|+..
T Consensus 296 ~~~~----~~-~~~~~--~~~~~~-~~~~~~-~G~~G~il~~~~~ 331 (334)
T PRK13684 296 PVGE----EV-PSNFY--KIVFLD-PEKGFV-LGQRGVLLRYVGS 331 (334)
T ss_pred CcCC----CC-CcceE--EEEEeC-CCceEE-ECCCceEEEecCC
Confidence 1100 11 11234 677776 455555 5678888887643
No 415
>PRK10115 protease 2; Provisional
Probab=94.77 E-value=11 Score=44.24 Aligned_cols=173 Identities=12% Similarity=0.027 Sum_probs=80.4
Q ss_pred eEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeC-C-----CcEEEEeCCCC--ceEEEEcCCCCCEE-EEEEe
Q 003871 526 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-D-----SSILVHCPCTK--KTKAKLKGHQNRIT-CLAYS 595 (790)
Q Consensus 526 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~-d-----g~I~iwd~~~~--~~~~~l~~h~~~v~-~l~~s 595 (790)
.|++.|+.+|..+...-... . ..++|++|+ .|+.... + ..|+.+++.++ +....+........ .+..+
T Consensus 154 ~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s 231 (686)
T PRK10115 154 GIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKT 231 (686)
T ss_pred EEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEc
Confidence 34566666554221111111 1 458999988 4443332 2 36888898887 33334443333333 33334
Q ss_pred CCCCEEEEEeC---CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEe----CCcEEEEECCCC
Q 003871 596 LSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH----EGQIDVYEAPTL 668 (790)
Q Consensus 596 pdg~~l~s~s~---dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~----dg~I~iwd~~~~ 668 (790)
.|+++++..+. ++.+.+++....... ...+. +... +....+. +..+.+++... ...|...++...
T Consensus 232 ~d~~~l~i~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~----~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~ 303 (686)
T PRK10115 232 TSKHYVVIHLASATTSEVLLLDAELADAE-PFVFL--PRRK----DHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDE 303 (686)
T ss_pred CCCCEEEEEEECCccccEEEEECcCCCCC-ceEEE--ECCC----CCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCc
Confidence 48887665443 457888885331100 11111 1111 1222222 32333333332 223555555421
Q ss_pred ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 003871 669 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 669 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~ 709 (790)
.....+........+..+.+. .+.++++...+|.-+++-+
T Consensus 304 ~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 304 QQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred ccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 222333332223467888887 3355566666776555443
No 416
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.73 E-value=7.7 Score=42.12 Aligned_cols=277 Identities=15% Similarity=0.089 Sum_probs=146.8
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-------CcEEEEecCC
Q 003871 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSASGG 525 (790)
Q Consensus 453 g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-------~~~l~s~sdg 525 (790)
...+++|+..|.++||+...... ++. .-++. ..-..+|..++.- ...||+-.-.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~--------------~~~-~lllE----~~l~~PILqv~~G~F~s~~~~~~LaVLhP~ 97 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEF--------------QPE-DLLLE----TQLKDPILQVECGKFVSGSEDLQLAVLHPR 97 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCC--------------CCc-cEEEE----EecCCcEEEEEeccccCCCCcceEEEecCC
Confidence 45799999999999998754332 111 11111 1245666666654 3456666677
Q ss_pred eEEEEECCC--Cc-------EEEEEcCC--CCCeEEEEEcC----CC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCCC
Q 003871 526 KISIFSLET--FQ-------TLATFANP--PPIATYFILLP----QD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 588 (790)
Q Consensus 526 ~I~vwd~~~--~~-------~~~~~~~~--~~~v~~l~~s~----~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~ 588 (790)
.+.+|.+.. |. .+..+..| ......+++-| .| ++.+-+.||.+.+|+-+.-.....+.+ ---
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCC
Confidence 777887621 11 11111112 22223344332 22 788999999999999765443444443 112
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCce------------------eeceeeeeeccCCCCCCCCeEEEE---EeC
Q 003871 589 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK------------------LCSKFLHSFQTGLVPETTIVNHIQ---FHP 647 (790)
Q Consensus 589 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~------------------~~~~~l~~~~~~~~~~~~~v~~i~---~sp 647 (790)
.-.+.|.|....+++++.+..+..|....-.. ....+-.++.-| ..+..+. ++.
T Consensus 177 PgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlG-----E~~l~i~v~~~~~ 251 (418)
T PF14727_consen 177 PGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLG-----EQALDIQVVRFSS 251 (418)
T ss_pred CcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECC-----ceeEEEEEEEcCC
Confidence 23467888888899999998998887632000 000011111112 2333333 332
Q ss_pred CCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEE-EEe----cCC---CEEEEEEcCCeEEEEECCCCeEEEEec
Q 003871 648 DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYA-TYS----CDG---KCIYVSCKSGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 648 ~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l-~~s----~dg---~~l~sgs~dg~i~vwd~~~~~~~~~~~ 719 (790)
....+++-....+.+.+- +|......+. .....++ .|. .++ ..++.++.++++.||.=. +++-...
T Consensus 252 ~~~~IvvLger~Lf~l~~-~G~l~~~krL---d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~ 325 (418)
T PF14727_consen 252 SESDIVVLGERSLFCLKD-NGSLRFQKRL---DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQ 325 (418)
T ss_pred CCceEEEEecceEEEEcC-CCeEEEEEec---CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecC
Confidence 333444434556777766 4554433322 2222222 122 122 247888999999998633 2332221
Q ss_pred cccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCcccc
Q 003871 720 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 769 (790)
Q Consensus 720 ~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w 769 (790)
. . ..+|.+.-..|.. -..++++-+.+|.+.+-=+.|.-...
T Consensus 326 l------~--~~PVal~v~~~~~-~~G~IV~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 326 L------P--HVPVALSVANFNG-LKGLIVSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred C------C--CCCEEEEecccCC-CCceEEEEcCCCcEEEEEeCCCCccc
Confidence 1 1 2233322223333 46789999999999987665544333
No 417
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.71 E-value=3.4 Score=44.68 Aligned_cols=203 Identities=13% Similarity=0.084 Sum_probs=110.6
Q ss_pred CCeEEEEeCCCcEEEEeCCCCceEEEEcCC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCC
Q 003871 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 633 (790)
Q Consensus 556 ~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h--~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 633 (790)
+|.+.++..+|.|.-.|..++..+.....- ...+.+-.+..+|+ ++.++.++.+..+|.++|+......... .
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~--- 142 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S--- 142 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-C---
Confidence 447777788999999999888765433221 12233333333665 7778889999999998887665554441 0
Q ss_pred CCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCC-CCCCeEEEEEecCCCEEEEEEc--CCeEEEEECC
Q 003871 634 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCK--SGHVKVFDTS 710 (790)
Q Consensus 634 ~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~sgs~--dg~i~vwd~~ 710 (790)
. .+..-..-.++..+..+.++.++-.|..+|+..-...... -...+...-...+ ..++.+.. ++.+.-.|..
T Consensus 143 ~----~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 143 P----YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIAS-GTVYVGSDGYDGILYALNAE 217 (370)
T ss_pred e----EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeec-ceEEEecCCCcceEEEEEcc
Confidence 0 1222222334433333356777777777777654432211 0111111111222 34455555 6678888888
Q ss_pred CCeEEEEeccccccCCCCcc----cccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccccccCCC
Q 003871 711 TLELRCQINLTAYAQPGTIS----LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 774 (790)
Q Consensus 711 ~~~~~~~~~~~~~~~~gh~~----~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~~~~ 774 (790)
+|............ |... ..+..-.+- .+.-+..++.+|.+.-.+..+++..|....+
T Consensus 218 ~G~~~w~~~~~~~~--~~~~~~~~~~~~~~~v~----v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 218 DGTLKWSQKVSQTI--GRTAISTTPAVDGGPVY----VDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CCcEeeeeeeeccc--CcccccccccccCceEE----ECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 88877664321111 1100 011100111 1123466677888888999999999977654
No 418
>PHA03098 kelch-like protein; Provisional
Probab=94.58 E-value=2 Score=49.06 Aligned_cols=185 Identities=11% Similarity=0.020 Sum_probs=88.8
Q ss_pred CcEEEEec-C------CeEEEEECCCCcEEEEEcCCCCCe-EEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEE
Q 003871 516 GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK 581 (790)
Q Consensus 516 ~~~l~s~s-d------g~I~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~g-~l~sgs~d-----g~I~iwd~~~~~~~~~ 581 (790)
+..++.|+ + ..+..||..+.+....-.-+.... .+++ .-++ .++.|+.+ ..+..||..+++-..
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~- 372 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWRE- 372 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCceee-
Confidence 55566665 3 257788887765432111111111 1222 2356 66667655 257788887664321
Q ss_pred EcC--CCCCEEEEEEeCCCCEEEEEeCC------CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEE
Q 003871 582 LKG--HQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 653 (790)
Q Consensus 582 l~~--h~~~v~~l~~spdg~~l~s~s~d------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~ 653 (790)
... +...-.+++ .-+++..+.||.+ ..+..||..+++-. .+..++..+. .. +++. .+++..+
T Consensus 373 ~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~---~~~~~p~~r~----~~-~~~~-~~~~iyv 442 (534)
T PHA03098 373 EPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS---KGSPLPISHY----GG-CAIY-HDGKIYV 442 (534)
T ss_pred CCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee---ecCCCCcccc----Cc-eEEE-ECCEEEE
Confidence 111 111111222 2356777777732 35888998874321 2221222221 11 2222 2455555
Q ss_pred EE-eC--------CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCCeE
Q 003871 654 SI-HE--------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLEL 714 (790)
Q Consensus 654 ~~-~d--------g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d-----g~i~vwd~~~~~~ 714 (790)
.| .+ ..+.+||..+++-...- ..... .........+++.++.||.+ +.+.+||..+.+-
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELS-SLNFP-RINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCC-CCCcc-cccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 54 21 13889998876533211 10011 11111122367777777754 4688888877653
No 419
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.54 E-value=0.1 Score=36.93 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=29.7
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003871 680 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 680 ~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~ 713 (790)
...|..++|+|...+||.|+.+|.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 567999999999999999999999999998 444
No 420
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.52 E-value=1.2 Score=50.55 Aligned_cols=117 Identities=9% Similarity=0.050 Sum_probs=73.3
Q ss_pred CeEEEEEcCCCeEEEEe-CCCcEEEEeCCCCceEEEEc-CCCCCEEEEEEe--CCCCEEEEEeCCCcEEEEECCCC----
Q 003871 547 IATYFILLPQDLFAFGF-DDSSILVHCPCTKKTKAKLK-GHQNRITCLAYS--LSLNVLVSSGADAQLCVWDAVGW---- 618 (790)
Q Consensus 547 ~v~~l~~s~~g~l~sgs-~dg~I~iwd~~~~~~~~~l~-~h~~~v~~l~~s--pdg~~l~s~s~dg~I~vwd~~~~---- 618 (790)
..+-+.-+.-+.++... ....+.|||.+.+.....-. ...+.|.++.|. |||+.+++.|..+.|.+|--...
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34445455555344334 44589999998876433221 346789999985 58999999999999998854211
Q ss_pred ceeeceeeeee-ccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECC
Q 003871 619 KKLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 666 (790)
Q Consensus 619 ~~~~~~~l~~~-~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~ 666 (790)
......+++.+ ...+++ .+|.+..|.++|. ++++.++.+.|+|-.
T Consensus 111 ~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~-LvV~sGNqlfv~dk~ 156 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTP--HPIGDSIWLKDGT-LVVGSGNQLFVFDKW 156 (631)
T ss_pred CCcccceeEEEEeecCCC--CCccceeEecCCe-EEEEeCCEEEEECCC
Confidence 11111222222 123333 5788999999984 555667788898753
No 421
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.40 E-value=6.6 Score=39.88 Aligned_cols=69 Identities=10% Similarity=0.057 Sum_probs=46.6
Q ss_pred eEEEEEcCCC-eEEEEeCCCcEEEEeCC------CC-ceEEEEcC-----CCCCEEEEEEeCCCC------------EEE
Q 003871 548 ATYFILLPQD-LFAFGFDDSSILVHCPC------TK-KTKAKLKG-----HQNRITCLAYSLSLN------------VLV 602 (790)
Q Consensus 548 v~~l~~s~~g-~l~sgs~dg~I~iwd~~------~~-~~~~~l~~-----h~~~v~~l~~spdg~------------~l~ 602 (790)
-+.++++|.+ .-++....+...+||.. .. ..+-.+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4789999999 66676677889999986 12 22333332 224577777764332 257
Q ss_pred EEeCCCcEEEEECC
Q 003871 603 SSGADAQLCVWDAV 616 (790)
Q Consensus 603 s~s~dg~I~vwd~~ 616 (790)
.+++||+|.-|...
T Consensus 105 f~tEdGTisaW~p~ 118 (336)
T TIGR03118 105 FVTEDGTLSGWAPA 118 (336)
T ss_pred EEeCCceEEeecCc
Confidence 78899999999854
No 422
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.36 E-value=1.3 Score=47.72 Aligned_cols=150 Identities=9% Similarity=0.063 Sum_probs=80.1
Q ss_pred CCEEEEEEeCCCCEEEEEe-----------CCC-cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE
Q 003871 587 NRITCLAYSLSLNVLVSSG-----------ADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (790)
Q Consensus 587 ~~v~~l~~spdg~~l~s~s-----------~dg-~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~ 654 (790)
.....|+|.++|+++++-. ..+ .|.+++-.++.-.. .....+..+. .....+++.++| .+++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~-d~~~vfa~~l----~~p~Gi~~~~~G-lyV~ 87 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY-DKSNVFAEEL----SMVTGLAVAVGG-VYVA 87 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc-ceeEEeecCC----CCccceeEecCC-EEEe
Confidence 3466789999998777643 223 67777654321110 0111122222 246789999998 4444
Q ss_pred EeCCcEEEE-ECCCC-----c--ee-eeecCCC--CCCCeEEEEEecCCCEEEEEEcC-------------------CeE
Q 003871 655 IHEGQIDVY-EAPTL-----N--HT-SQLVPDK--MDLPITYATYSCDGKCIYVSCKS-------------------GHV 704 (790)
Q Consensus 655 ~~dg~I~iw-d~~~~-----~--~~-~~~~~~~--h~~~v~~l~~s~dg~~l~sgs~d-------------------g~i 704 (790)
. ...|..| |.... + .+ ..+.... +......++|.|||.+.++-+.. |.|
T Consensus 88 ~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 88 T-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred C-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 3 3345544 54311 1 11 1222110 13457789999999876654421 456
Q ss_pred EEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCC
Q 003871 705 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 755 (790)
Q Consensus 705 ~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg 755 (790)
.-++..+++.. .+. .|+ -++..++|+| +|+++++-..++
T Consensus 167 ~r~~pdg~~~e-~~a------~G~----rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 167 FRYNPDGGKLR-VVA------HGF----QNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEEecCCCeEE-EEe------cCc----CCCccceECC-CCCEEEEccCCC
Confidence 66666655532 221 132 2244899999 888887655443
No 423
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.28 E-value=0.15 Score=48.97 Aligned_cols=102 Identities=15% Similarity=0.076 Sum_probs=67.1
Q ss_pred CcEEEEec-CCeEEEEECCCC-cEEEEEcCCCCCeEE-EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCC-CCEE
Q 003871 516 GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATY-FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRIT 590 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~-~~~~~~~~~~~~v~~-l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-~~v~ 590 (790)
+..+++|+ +|.|.+|+..-. .....+......|.+ +....++ +..+++.||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 55667777 999999987621 111111222233333 3333444 88899999999999999888777776677 5555
Q ss_pred EEEEeCCCCEEEEE--eCCCcEEEEECCC
Q 003871 591 CLAYSLSLNVLVSS--GADAQLCVWDAVG 617 (790)
Q Consensus 591 ~l~~spdg~~l~s~--s~dg~I~vwd~~~ 617 (790)
....+..++.++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 66666666677776 7777788887765
No 424
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.16 E-value=0.62 Score=50.95 Aligned_cols=145 Identities=9% Similarity=0.028 Sum_probs=87.9
Q ss_pred CCCeEEEEec-CcEEEEec----CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-----eEEEEeCCCcEEEEeCCC
Q 003871 506 KDSISCFALR-GSHLFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-----LFAFGFDDSSILVHCPCT 575 (790)
Q Consensus 506 ~~~V~~l~~s-~~~l~s~s----dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-----~l~sgs~dg~I~iwd~~~ 575 (790)
-.++..++|. |+.++-.. +|.+++=|. +.+..| ..|..+.|.|-+ .+.+.-....|.+|.+.-
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4578899999 77765543 455544332 233333 458889999874 455556677899998752
Q ss_pred -----CceEEEEcC-C--CC--CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeee-eeccCCCCCCCCeEEEE
Q 003871 576 -----KKTKAKLKG-H--QN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-SFQTGLVPETTIVNHIQ 644 (790)
Q Consensus 576 -----~~~~~~l~~-h--~~--~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~-~~~~~~~~~~~~v~~i~ 644 (790)
++.+..-.. . .- --..+.|+|....|++-.....=.++++.... ..++ .+.. + +-|.|.+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~----srVkaDi~~-~----G~IhCAC 162 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS----SRVKADIKT-S----GLIHCAC 162 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC----ceEEEeccC-C----ceEEEEE
Confidence 222221111 1 11 12467899988888776655444556665422 1111 1211 1 6899999
Q ss_pred EeCCCCEEEEE--eCCcEEEEECC
Q 003871 645 FHPDQIHLLSI--HEGQIDVYEAP 666 (790)
Q Consensus 645 ~sp~~~~l~~~--~dg~I~iwd~~ 666 (790)
|.+||..|+++ +.=.-++||-.
T Consensus 163 WT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 163 WTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ecCcCCEEEEEeCCeEEEEEecCc
Confidence 99999999885 33346788853
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.05 E-value=1.3 Score=51.55 Aligned_cols=90 Identities=10% Similarity=0.184 Sum_probs=58.0
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECC----------CCe--EEEEec--cccccCCCCcccccceEEEEEecC--
Q 003871 680 DLPITYATYSCDGKCIYVSCKSGHVKVFDTS----------TLE--LRCQIN--LTAYAQPGTISLELYPLVIAAHPL-- 743 (790)
Q Consensus 680 ~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~----------~~~--~~~~~~--~~~~~~~gh~~~~v~~~~v~~sp~-- 743 (790)
...|..+.++|+|++|+..|..|. .|-.+. .|+ ..+... ...+... +..+.+..+.|||.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~---~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTS---NSSLEIKQVRWHPWSE 159 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccC---CCCceEEEEEEcCCCC
Confidence 456889999999999998887654 343332 111 122211 1112211 12334559999993
Q ss_pred CCCEEEEEeCCCcEEEEecCCCccccccCC
Q 003871 744 EPNRIALGLTNGRVHVIEPLESEVEWGKLP 773 (790)
Q Consensus 744 d~~~las~s~Dg~i~iW~~~~~~~~w~~~~ 773 (790)
++.+|+.-..|+++|+||+...+..|.+.+
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 257888889999999999988776776544
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=3.8 Score=46.34 Aligned_cols=230 Identities=10% Similarity=0.073 Sum_probs=115.1
Q ss_pred CeEEEEec-CcEEEEec-CCeEEEEECCCCcEEEEE----cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE
Q 003871 508 SISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA 580 (790)
Q Consensus 508 ~V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~----~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~ 580 (790)
.+-.+.|+ .+.|++.. +|++.+|++- |+.+..+ ......|..+.+..+| .+.+. +|.+.+-+-.......
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~~ 161 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKLR 161 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchhh
Confidence 78889999 77777766 9999999986 4444432 2233446666666677 44443 3444443322111222
Q ss_pred EEcC---CCCCEEEEEEeCCCCE-EEEEeCCCcE--EEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE
Q 003871 581 KLKG---HQNRITCLAYSLSLNV-LVSSGADAQL--CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (790)
Q Consensus 581 ~l~~---h~~~v~~l~~spdg~~-l~s~s~dg~I--~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~ 654 (790)
+++. ..-+-+|-...+++.. .....-+-.| .++....+. ..... +...+ +.+..+..||+.++|+.
T Consensus 162 ~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~---~q~~~-~~~~~----~~~~ki~VS~n~~~laL 233 (829)
T KOG2280|consen 162 KMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR---VQLHA-LSWPN----SSVVKISVSPNRRFLAL 233 (829)
T ss_pred hCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccc---ccccc-cCCCC----ceEEEEEEcCCcceEEE
Confidence 2222 1112122222232211 1101111010 112222211 11111 22233 46888999999999998
Q ss_pred -EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCccccc
Q 003871 655 -IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 733 (790)
Q Consensus 655 -~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v 733 (790)
...|.|.+-+....+....+....|. +...++|. |.|..+..|+.. +... |..++.|
T Consensus 234 yt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wc---------gndaVvl~~e~~----l~lv--------gp~gd~V 291 (829)
T KOG2280|consen 234 YTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWC---------GNDAVVLSWEVN----LMLV--------GPPGDSV 291 (829)
T ss_pred EecCCcEEEEecchhhhhhccCCCCCC-chHhceee---------cCCceEEEEeee----EEEE--------cCCCCcc
Confidence 68999999988877776666543332 22355665 344445555532 1111 2112222
Q ss_pred ceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccccccCCCCCC
Q 003871 734 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTDS 777 (790)
Q Consensus 734 ~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~~~~~~~ 777 (790)
. |-- +...+++.--|| |||..-.+.+-.-.++++++|
T Consensus 292 ~-----f~y-d~t~~l~~E~DG-VRI~t~t~~EFl~rvp~~~en 328 (829)
T KOG2280|consen 292 Q-----FYY-DETAILSAEVDG-VRIITSTSHEFLQRVPAETEN 328 (829)
T ss_pred c-----ccc-CCCceeeeccCe-eEEeccchHHHHHhCChhhhh
Confidence 2 222 233345666665 788876665544444444444
No 427
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.79 E-value=17 Score=42.75 Aligned_cols=71 Identities=17% Similarity=0.044 Sum_probs=49.0
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCC----------CCce---EEEE--------cCCCCCEEEEEEeCC---CCE
Q 003871 546 PIATYFILLPQD-LFAFGFDDSSILVHCPC----------TKKT---KAKL--------KGHQNRITCLAYSLS---LNV 600 (790)
Q Consensus 546 ~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~----------~~~~---~~~l--------~~h~~~v~~l~~spd---g~~ 600 (790)
-.|..+.++|+| .++..+..|. .|..+. .|+. .+.+ ..+...|..+.|+|. +.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 357889999999 8877777663 333331 1111 1111 123457889999995 578
Q ss_pred EEEEeCCCcEEEEECCC
Q 003871 601 LVSSGADAQLCVWDAVG 617 (790)
Q Consensus 601 l~s~s~dg~I~vwd~~~ 617 (790)
|+.-..|+++|+||+..
T Consensus 164 l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEecCCEEEEEecCC
Confidence 99999999999999975
No 428
>PRK13684 Ycf48-like protein; Provisional
Probab=93.64 E-value=11 Score=39.89 Aligned_cols=155 Identities=6% Similarity=-0.028 Sum_probs=87.2
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Q 003871 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 622 (790)
Q Consensus 545 ~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l-~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~ 622 (790)
...+.++.+.|++ .+++| ..|.+..-.-..++..... ..-...++++.+.|+++.++++ ..|.+++=..+.|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW- 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW- 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc-
Confidence 4567889999988 65554 4565543211223322222 2334678999999998877665 4676653223333210
Q ss_pred ceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecC-CCCCCCeEEEEEecCCCEEEEEEcC
Q 003871 623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKS 701 (790)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs~d 701 (790)
..+. .+.... ...+.++.+.|++..++++.+|.+.. ....++.-..... ..-....+.+.|..+++.+++ +..
T Consensus 249 -~~~~-~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~ 322 (334)
T PRK13684 249 -SKPI-IPEITN--GYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQR 322 (334)
T ss_pred -cccc-CCcccc--ccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCC
Confidence 1111 110100 03578899999988888888876653 3444443333221 111345788888877766554 567
Q ss_pred CeEEEEE
Q 003871 702 GHVKVFD 708 (790)
Q Consensus 702 g~i~vwd 708 (790)
|.|-.|+
T Consensus 323 G~il~~~ 329 (334)
T PRK13684 323 GVLLRYV 329 (334)
T ss_pred ceEEEec
Confidence 7776664
No 429
>PHA03098 kelch-like protein; Provisional
Probab=93.58 E-value=3.4 Score=47.22 Aligned_cols=182 Identities=10% Similarity=-0.022 Sum_probs=87.6
Q ss_pred cEEEEeCCCCceEEEEcC-CCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCceeeceeeeeeccCCCCCCCCe
Q 003871 567 SILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 640 (790)
Q Consensus 567 ~I~iwd~~~~~~~~~l~~-h~~~v~~l~~spdg~~l~s~s~d-----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v 640 (790)
.+..||..+++.. .+.. .......-...-+++..+.||.+ ..+..||..+++-. .+..++.... .
T Consensus 312 ~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~---~~~~lp~~r~----~- 382 (534)
T PHA03098 312 SVVSYDTKTKSWN-KVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR---EEPPLIFPRY----N- 382 (534)
T ss_pred cEEEEeCCCCeee-ECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee---eCCCcCcCCc----c-
Confidence 5778888766542 2221 10111111122367777888865 34778888774422 1221222211 1
Q ss_pred EEEEEeCCCCEEEEEe---C----CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC--------CeEE
Q 003871 641 NHIQFHPDQIHLLSIH---E----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--------GHVK 705 (790)
Q Consensus 641 ~~i~~sp~~~~l~~~~---d----g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d--------g~i~ 705 (790)
.+++. -+++..+.|. + +.+..||..+.+-...-... .......+...+++..+.||.+ ..+.
T Consensus 383 ~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 459 (534)
T PHA03098 383 PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--ISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVE 459 (534)
T ss_pred ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--ccccCceEEEECCEEEEECCccCCCCCcccceEE
Confidence 12222 2455555532 1 35889998765432211100 1111112233466777777643 2388
Q ss_pred EEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC-----CcEEEEecCCCccccccCC
Q 003871 706 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKLP 773 (790)
Q Consensus 706 vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D-----g~i~iW~~~~~~~~w~~~~ 773 (790)
+||..+++-...-. .. .+.. . .. .+.+ ++.+++.||.+ ..+.++|+.+. .|...+
T Consensus 460 ~yd~~~~~W~~~~~-~~-~~r~--~--~~--~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~ 519 (534)
T PHA03098 460 SYNPVTNKWTELSS-LN-FPRI--N--AS--LCIF---NNKIYVVGGDKYEYYINEIEVYDDKTN--TWTLFC 519 (534)
T ss_pred EecCCCCceeeCCC-CC-cccc--c--ce--EEEE---CCEEEEEcCCcCCcccceeEEEeCCCC--EEEecC
Confidence 99988775433211 10 1111 1 11 2222 56777777764 46788888766 487544
No 430
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.45 E-value=1.8 Score=47.48 Aligned_cols=154 Identities=12% Similarity=0.134 Sum_probs=87.0
Q ss_pred CCeEEEEEcCCC-eEEEEe--CCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCC----CCEEEEEeCCCcEEEEECCCC
Q 003871 546 PIATYFILLPQD-LFAFGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS----LNVLVSSGADAQLCVWDAVGW 618 (790)
Q Consensus 546 ~~v~~l~~s~~g-~l~sgs--~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd----g~~l~s~s~dg~I~vwd~~~~ 618 (790)
.++..++|.... .+.+.- .+|.+++=| .+.+..|+ .|.++.|.|- ...+.+.-....|.||.+...
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 457788886332 444432 334333322 23344443 5889999984 334556667889999998732
Q ss_pred ceeeceeeee----eccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCC--CceeeeecCCCCCCCeEEEEEecC
Q 003871 619 KKLCSKFLHS----FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT--LNHTSQLVPDKMDLPITYATYSCD 691 (790)
Q Consensus 619 ~~~~~~~l~~----~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~--~~~~~~~~~~~h~~~v~~l~~s~d 691 (790)
.....+.+.. +.+... --...+.|+|....|++ .....-.+++++. .+....+. ..+.|.|.+|.+|
T Consensus 93 ~~e~~K~l~sQtcEi~e~~p---vLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~---~~G~IhCACWT~D 166 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFP---VLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK---TSGLIHCACWTKD 166 (671)
T ss_pred ccccccceeeeeeeccCCcc---cCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc---CCceEEEEEecCc
Confidence 2222222210 111100 12245789999999888 3333334455543 23333343 3788999999999
Q ss_pred CCEEEEEE-cCCeEEEEECCCC
Q 003871 692 GKCIYVSC-KSGHVKVFDTSTL 712 (790)
Q Consensus 692 g~~l~sgs-~dg~i~vwd~~~~ 712 (790)
|+.|+.+- ..=.-++||-...
T Consensus 167 G~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CCEEEEEeCCeEEEEEecCchh
Confidence 98776543 3445789986543
No 431
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.34 E-value=4.4 Score=43.95 Aligned_cols=149 Identities=11% Similarity=0.181 Sum_probs=91.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeC-----CCCEEEEEeCCcEEEEECCC--Cc-
Q 003871 598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-----DQIHLLSIHEGQIDVYEAPT--LN- 669 (790)
Q Consensus 598 g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp-----~~~~l~~~~dg~I~iwd~~~--~~- 669 (790)
...|++||..|.++||+...+.......+-...- . .+|..+...+ +...||+=+-..+.+|.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l--~---~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL--K---DPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEec--C---CcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCc
Confidence 4589999999999999996644222211111111 1 5787776543 33566666788888888731 11
Q ss_pred ------eeeeecCCCCCCCeEEEEEec----C-CCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEE
Q 003871 670 ------HTSQLVPDKMDLPITYATYSC----D-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 738 (790)
Q Consensus 670 ------~~~~~~~~~h~~~v~~l~~s~----d-g~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 738 (790)
.+.....+.-......+++.| . -.+++.=+.||.+.+|+-+..-....+. . ++.+| -+
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp-~-~llPg---------Pl 180 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP-D-FLLPG---------PL 180 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC-C-CCCCc---------Ce
Confidence 112222111133445555554 2 3578889999999999987655444332 2 33334 45
Q ss_pred EEecCCCCEEEEEeCCCcEEEEecC
Q 003871 739 AAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 739 ~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
+|.| .-+.+++++.+..+.-|+.+
T Consensus 181 ~Y~~-~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 181 CYCP-RTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred EEee-cCCEEEEecCceeEEEecHH
Confidence 6777 56788888888888888764
No 432
>PHA02790 Kelch-like protein; Provisional
Probab=93.03 E-value=6.9 Score=43.94 Aligned_cols=184 Identities=9% Similarity=-0.102 Sum_probs=85.1
Q ss_pred CcEEEEec-C-----CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC--CcEEEEeCCCCceEEEEcCCC
Q 003871 516 GSHLFSAS-G-----GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD--SSILVHCPCTKKTKAKLKGHQ 586 (790)
Q Consensus 516 ~~~l~s~s-d-----g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~d--g~I~iwd~~~~~~~~~l~~h~ 586 (790)
+..++.|+ + ..+..||..+++....-.-+..........-+| ..++|+.+ ..+..||..+++-. .+..-.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~-~~~~l~ 350 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWV-NMPSLL 350 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEE-ECCCCC
Confidence 44455555 3 257778887765433211111111111122356 66666653 36888887765432 221111
Q ss_pred CCE-EEEEEeCCCCEEEEEeCCC---cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEE
Q 003871 587 NRI-TCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV 662 (790)
Q Consensus 587 ~~v-~~l~~spdg~~l~s~s~dg---~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~i 662 (790)
.+. ...+..-+|+..+.||.++ .+..||.++.+-. .+..++.... .. +++ .-+++..+.| |.+.+
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~---~~~~m~~~r~----~~-~~~-~~~~~IYv~G--G~~e~ 419 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQ---FGPSTYYPHY----KS-CAL-VFGRRLFLVG--RNAEF 419 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEE---eCCCCCCccc----cc-eEE-EECCEEEEEC--CceEE
Confidence 111 1112223677778887653 4778888774321 1111111111 11 221 2345555555 35678
Q ss_pred EECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCCe
Q 003871 663 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLE 713 (790)
Q Consensus 663 wd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d-----g~i~vwd~~~~~ 713 (790)
||..+.+-... ....+...-.++ ..-+|+..+.||.+ ..+.+||..+++
T Consensus 420 ydp~~~~W~~~-~~m~~~r~~~~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 420 YCESSNTWTLI-DDPIYPRDNPEL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ecCCCCcEeEc-CCCCCCccccEE-EEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 88876543221 111111111122 23467777777754 245556655543
No 433
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.93 E-value=11 Score=37.86 Aligned_cols=153 Identities=11% Similarity=0.062 Sum_probs=91.3
Q ss_pred CCCCeEEEEecCcEEEEec-CCeEEEEECCCCcEEEEEcC--CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC---c
Q 003871 505 PKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---K 577 (790)
Q Consensus 505 ~~~~V~~l~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~--~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~---~ 577 (790)
..+-+..+.+++++...+. +.-+++.|+.+......... ..+--.++.. .| +..++..|.-..+.|+.+. .
T Consensus 85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 3455667788888888888 78899999987644333221 1122344444 45 6666675666778887654 3
Q ss_pred eEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeC
Q 003871 578 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE 657 (790)
Q Consensus 578 ~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~d 657 (790)
...++......-..++.| |++-..+..|+-+.+-|+..... ...+.....+ ..+.++..+++-.+++.. +
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~s--Pvli~~~n~g-----~g~~sv~vsdnr~y~vvy-~ 232 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHS--PVLIGSYNTG-----PGTYSVSVSDNRAYLVVY-D 232 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCC--CeEEEEEecC-----CceEEEEecCCeeEEEEc-c
Confidence 344454445555677776 66777778899999999987321 1112111111 367777777765555543 3
Q ss_pred CcEEEEECCCCc
Q 003871 658 GQIDVYEAPTLN 669 (790)
Q Consensus 658 g~I~iwd~~~~~ 669 (790)
..+.+-|..+.+
T Consensus 233 egvlivd~s~~s 244 (370)
T COG5276 233 EGVLIVDVSGPS 244 (370)
T ss_pred cceEEEecCCCC
Confidence 335555655443
No 434
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.63 E-value=1.8 Score=50.99 Aligned_cols=141 Identities=12% Similarity=0.068 Sum_probs=89.1
Q ss_pred CeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCce-----EEEEcCC------CCCEEEEEEeCCC-CEEEEEeCCCcEE
Q 003871 547 IATYFILLPQD---LFAFGFDDSSILVHCPCTKKT-----KAKLKGH------QNRITCLAYSLSL-NVLVSSGADAQLC 611 (790)
Q Consensus 547 ~v~~l~~s~~g---~l~sgs~dg~I~iwd~~~~~~-----~~~l~~h------~~~v~~l~~spdg-~~l~s~s~dg~I~ 611 (790)
++..+...+|+ .++..+++-.|+.||+++-.. ..-+..| .....++.|+|.- -..+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45566667777 334444545788999875321 1112111 2345578888853 2356777899999
Q ss_pred EEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCC--CCCeEEEEE
Q 003871 612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKM--DLPITYATY 688 (790)
Q Consensus 612 vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h--~~~v~~l~~ 688 (790)
+.-+.-.. ....+++-. ...++++|+|.|+.+++| ..|++.-|... ++....+..... ...|.+++|
T Consensus 182 V~~~~~~~----~~v~s~p~t-----~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 182 VKSTKQLA----QNVTSFPVT-----NSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred hhhhhhhh----hhhcccCcc-----cceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEE
Confidence 88776422 112212222 478999999999999998 77888888763 554444433221 478999999
Q ss_pred ecCCCEEEE
Q 003871 689 SCDGKCIYV 697 (790)
Q Consensus 689 s~dg~~l~s 697 (790)
-....++++
T Consensus 252 l~t~eflvv 260 (1405)
T KOG3630|consen 252 LSTQEFLVV 260 (1405)
T ss_pred ecceeEEEE
Confidence 877777764
No 435
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.56 E-value=11 Score=39.91 Aligned_cols=173 Identities=14% Similarity=0.104 Sum_probs=93.0
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCc------EEEEECCC--Cceeeceeee--eeccCCC-C---CCCCeEEEEEeCCCCEE
Q 003871 587 NRITCLAYSLSLNVLVSSGADAQ------LCVWDAVG--WKKLCSKFLH--SFQTGLV-P---ETTIVNHIQFHPDQIHL 652 (790)
Q Consensus 587 ~~v~~l~~spdg~~l~s~s~dg~------I~vwd~~~--~~~~~~~~l~--~~~~~~~-~---~~~~v~~i~~sp~~~~l 652 (790)
+.+.++.+.|++..+++.++++. +..+++.. +......... .+..... + .....-+|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 56788999976667777787877 66665543 1000000000 0111110 0 00133468888888888
Q ss_pred EEE-eC------CcEEEEECCCCceeeeecC-------------CCCCCCeEEEEEecCCCEEEEEEcC-----C--e--
Q 003871 653 LSI-HE------GQIDVYEAPTLNHTSQLVP-------------DKMDLPITYATYSCDGKCIYVSCKS-----G--H-- 703 (790)
Q Consensus 653 ~~~-~d------g~I~iwd~~~~~~~~~~~~-------------~~h~~~v~~l~~s~dg~~l~sgs~d-----g--~-- 703 (790)
++. .+ ..|+-++.. |+....+.. ...+..+-+++++|||+.|+++.+. + .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 876 55 678888876 666555421 1135678899999999977765542 2 1
Q ss_pred -----EEE--EECCC-CeEEEEeccccccCC-CCcccccceEEEEEecCCCCEEEEEe-----CCCcEEEEecC
Q 003871 704 -----VKV--FDTST-LELRCQINLTAYAQP-GTISLELYPLVIAAHPLEPNRIALGL-----TNGRVHVIEPL 763 (790)
Q Consensus 704 -----i~v--wd~~~-~~~~~~~~~~~~~~~-gh~~~~v~~~~v~~sp~d~~~las~s-----~Dg~i~iW~~~ 763 (790)
+++ ||..+ ++....+....-.+. ......+. .+.+-| ++++|+.== ....++|+.+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~is--d~~al~-d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGIS--DIAALP-DGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCce--eEEEEC-CCcEEEEEccCCCCccceEEEEEEE
Confidence 444 45544 333333321110000 00123344 888888 777766332 23456666554
No 436
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.18 E-value=18 Score=39.81 Aligned_cols=113 Identities=14% Similarity=0.046 Sum_probs=61.7
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccC-CCCCCCCeEEEEEeCCC------CEEEEE--e
Q 003871 586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQ------IHLLSI--H 656 (790)
Q Consensus 586 ~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~-~~~~~~~v~~i~~sp~~------~~l~~~--~ 656 (790)
-...+.|+|.|||+++++--..|.|++++..++.......+..+... .. +....|+++|+- .+|.++ .
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge---~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQH---NGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCC---CceeeEEECCCccccCCCcEEEEEEec
Confidence 34578899999998887765579999998765432111111111111 12 578999999874 345543 1
Q ss_pred ---C------CcEEEEECCCC--ce---eeeecC--CCCCCCeEEEEEecCCCEEEEEEcC
Q 003871 657 ---E------GQIDVYEAPTL--NH---TSQLVP--DKMDLPITYATYSCDGKCIYVSCKS 701 (790)
Q Consensus 657 ---d------g~I~iwd~~~~--~~---~~~~~~--~~h~~~v~~l~~s~dg~~l~sgs~d 701 (790)
+ ..|.-|.+... .. ...+.. ......-..++|.|||.+.++.++.
T Consensus 106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1 23444544311 11 111111 0112335578899999876655543
No 437
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.84 E-value=6.2 Score=42.56 Aligned_cols=148 Identities=14% Similarity=0.056 Sum_probs=78.8
Q ss_pred CeEEEEEcCCC-eEEEEe-----------CCC-cEEEEeCCC--Cc--eEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCc
Q 003871 547 IATYFILLPQD-LFAFGF-----------DDS-SILVHCPCT--KK--TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 609 (790)
Q Consensus 547 ~v~~l~~s~~g-~l~sgs-----------~dg-~I~iwd~~~--~~--~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~ 609 (790)
....++|.++| ++++-. ..+ .|.+++-.+ |+ ....+.......+.+++.++| .++ ++.+..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 34678999999 444432 223 677776443 32 223443334456889999998 444 444433
Q ss_pred EEEEECCCCc-ee-ece-eeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeC-------------------CcEEEEECC
Q 003871 610 LCVWDAVGWK-KL-CSK-FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-------------------GQIDVYEAP 666 (790)
Q Consensus 610 I~vwd~~~~~-~~-~~~-~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~d-------------------g~I~iwd~~ 666 (790)
.++.|..... .. ... .+..+......+......++|.|||.+.++ +.. +.|.-+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 3344554311 10 011 122122210000035778999999987665 411 345666665
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 003871 667 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 699 (790)
Q Consensus 667 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 699 (790)
+++ +..+.. . ......++|+++|+++++-.
T Consensus 173 g~~-~e~~a~-G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGK-LRVVAH-G-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCe-EEEEec-C-cCCCccceECCCCCEEEEcc
Confidence 443 233321 1 34567899999999877644
No 438
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.81 E-value=8.3 Score=36.78 Aligned_cols=181 Identities=12% Similarity=0.039 Sum_probs=95.2
Q ss_pred CC-eEEEEeCC--CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceeeceeeeeecc
Q 003871 556 QD-LFAFGFDD--SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQT 631 (790)
Q Consensus 556 ~g-~l~sgs~d--g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l-~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~ 631 (790)
+| ++.+.+.- ..|++||+.+|+.+..-+-....+..=-...-|.++ +..-.+|.-..+|.++-+........
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~---- 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE---- 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC----
Confidence 44 55555443 379999999998765543221112111111112222 22345778888888874332222211
Q ss_pred CCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCC---eEEEEEecCCCEEEEEEcCCeEEEE
Q 003871 632 GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLP---ITYATYSCDGKCIYVSCKSGHVKVF 707 (790)
Q Consensus 632 ~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~---v~~l~~s~dg~~l~sgs~dg~i~vw 707 (790)
+.=+.++ .|++.|..+ ....++.-|.++-....++.......+ ++.+.|- ||...|-.-.+..|...
T Consensus 131 ------GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI 201 (262)
T COG3823 131 ------GEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARI 201 (262)
T ss_pred ------Ccceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEE
Confidence 2334444 344445554 455677777665443333221111222 3344442 56666655556677778
Q ss_pred ECCCCeEEEEeccccccC----CCCcccccceEEEEEecCCCCEEEEE
Q 003871 708 DTSTLELRCQINLTAYAQ----PGTISLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 708 d~~~~~~~~~~~~~~~~~----~gh~~~~v~~~~v~~sp~d~~~las~ 751 (790)
|..+|+.+..+......+ .+.+.+..+ .+++.|+.+++++||
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlN--GIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLN--GIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCcccccccccc--ceeecCcCCeEEEec
Confidence 888998887776443221 122233445 899999544666765
No 439
>PRK10115 protease 2; Provisional
Probab=91.46 E-value=35 Score=40.22 Aligned_cols=193 Identities=7% Similarity=-0.076 Sum_probs=98.2
Q ss_pred CeEEEEEcCCC-eEEEEeC-CC----cEEEEeCCCCceEEE-EcCCCCCEEEEEEeCCCCEEEEEeCC------CcEEEE
Q 003871 547 IATYFILLPQD-LFAFGFD-DS----SILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVW 613 (790)
Q Consensus 547 ~v~~l~~s~~g-~l~sgs~-dg----~I~iwd~~~~~~~~~-l~~h~~~v~~l~~spdg~~l~s~s~d------g~I~vw 613 (790)
.+..+.++||| +|+.+.. +| .|++.|+.+|..+.. +.+ . -..++|++|++.|+....+ ..|+.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 35678899999 6665433 33 689999988864322 222 1 1469999999877665442 357778
Q ss_pred ECCCCceeeceeeeeeccCCCCCCCCeE-EEEEeCCCCEEEE-E---eCCcEEEEECC--CCceeeeecCCCCCCCeEEE
Q 003871 614 DAVGWKKLCSKFLHSFQTGLVPETTIVN-HIQFHPDQIHLLS-I---HEGQIDVYEAP--TLNHTSQLVPDKMDLPITYA 686 (790)
Q Consensus 614 d~~~~~~~~~~~l~~~~~~~~~~~~~v~-~i~~sp~~~~l~~-~---~dg~I~iwd~~--~~~~~~~~~~~~h~~~v~~l 686 (790)
++.++.... ..+. .... .... .+..+.++++++. + .++.+.+++.. ++.....+.. . ......+
T Consensus 205 ~lgt~~~~d-~lv~---~e~~---~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~-~~~~~~~ 275 (686)
T PRK10115 205 TIGTPASQD-ELVY---EEKD---DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR-R-KDHEYSL 275 (686)
T ss_pred ECCCChhHC-eEEE---eeCC---CCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC-C-CCCEEEE
Confidence 888752111 1222 1111 1222 3344558887776 2 45679999953 3332222221 1 2222222
Q ss_pred EEecCCCEEEEEEc---CCeEEEEECC-CCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEec
Q 003871 687 TYSCDGKCIYVSCK---SGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 687 ~~s~dg~~l~sgs~---dg~i~vwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
. +..+.+.+.... ...|...++. .++....+. + .....+. .+.++. +.++++...+|.-+++-+
T Consensus 276 ~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~-~------~~~~~i~--~~~~~~--~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 276 D-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIP-P------RENIMLE--GFTLFT--DWLVVEERQRGLTSLRQI 343 (686)
T ss_pred E-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEEC-C------CCCCEEE--EEEEEC--CEEEEEEEeCCEEEEEEE
Confidence 2 223333332222 2234444544 222222221 1 1122344 667664 456677777887666655
Q ss_pred C
Q 003871 763 L 763 (790)
Q Consensus 763 ~ 763 (790)
.
T Consensus 344 ~ 344 (686)
T PRK10115 344 N 344 (686)
T ss_pred c
Confidence 4
No 440
>PHA02790 Kelch-like protein; Provisional
Probab=91.20 E-value=8.6 Score=43.21 Aligned_cols=188 Identities=6% Similarity=-0.035 Sum_probs=90.1
Q ss_pred CC-eEEEEeCCC-----cEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCC--CcEEEEECCCCceeeceeee
Q 003871 556 QD-LFAFGFDDS-----SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD--AQLCVWDAVGWKKLCSKFLH 627 (790)
Q Consensus 556 ~g-~l~sgs~dg-----~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d--g~I~vwd~~~~~~~~~~~l~ 627 (790)
++ .+++|+.++ .+..||..+++....-.............-++...+.||.+ ..+..||..+++- ..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W---~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAW---VNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeE---EECC
Confidence 35 566666543 57778887764322111111111111122367777777754 3578888766432 2222
Q ss_pred eeccCCCCCCCCeEEEEEeCCCCEEEEE-eC---CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe
Q 003871 628 SFQTGLVPETTIVNHIQFHPDQIHLLSI-HE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 703 (790)
Q Consensus 628 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d---g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~ 703 (790)
.++.... .. +++ .-+|+..+.| .+ ..+..||..+.+-...-.. . .......+..-+|+..+.| |.
T Consensus 348 ~l~~~r~----~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m-~-~~r~~~~~~~~~~~IYv~G---G~ 416 (480)
T PHA02790 348 SLLKPRC----NP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST-Y-YPHYKSCALVFGRRLFLVG---RN 416 (480)
T ss_pred CCCCCCc----cc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC-C-CccccceEEEECCEEEEEC---Cc
Confidence 2222211 11 122 2245555554 33 3477888876543221111 0 1111112223466666666 35
Q ss_pred EEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC-----CcEEEEecCCCccccc
Q 003871 704 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWG 770 (790)
Q Consensus 704 i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D-----g~i~iW~~~~~~~~w~ 770 (790)
+.+||..+++-... .+. ..+.. . . +++.. ++++.+.||.+ .++..||+.+.+ |.
T Consensus 417 ~e~ydp~~~~W~~~-~~m-~~~r~--~--~---~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~--W~ 475 (480)
T PHA02790 417 AEFYCESSNTWTLI-DDP-IYPRD--N--P---ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS--WN 475 (480)
T ss_pred eEEecCCCCcEeEc-CCC-CCCcc--c--c---EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe--EE
Confidence 77899887654322 111 01111 1 1 22222 57788888865 357788887664 64
No 441
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.01 E-value=24 Score=37.44 Aligned_cols=235 Identities=13% Similarity=0.105 Sum_probs=115.6
Q ss_pred CeEEEEec--CcEEEEecCCeEEEEECCCCcE---EEEE----cCCCCCeEEEEEcCC----C-eEEEEeCC--------
Q 003871 508 SISCFALR--GSHLFSASGGKISIFSLETFQT---LATF----ANPPPIATYFILLPQ----D-LFAFGFDD-------- 565 (790)
Q Consensus 508 ~V~~l~~s--~~~l~s~sdg~I~vwd~~~~~~---~~~~----~~~~~~v~~l~~s~~----g-~l~sgs~d-------- 565 (790)
..++|+|. |+++++-..|.|++++ ..+.. +..+ .........++++|+ + ..++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35678888 6666655589999999 44443 2222 123456789999995 5 22322311
Q ss_pred CcEEEEeCCCC-------c-eEEEEcC---CCCCEEEEEEeCCCCEEEEEeCCCc-------------EEEEECCCCcee
Q 003871 566 SSILVHCPCTK-------K-TKAKLKG---HQNRITCLAYSLSLNVLVSSGADAQ-------------LCVWDAVGWKKL 621 (790)
Q Consensus 566 g~I~iwd~~~~-------~-~~~~l~~---h~~~v~~l~~spdg~~l~s~s~dg~-------------I~vwd~~~~~~~ 621 (790)
..|.-|....+ + .+..+.. ....-..++|.|||.+.++.++.+. |.-.+... +..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCC
Confidence 23444444333 1 1112222 2234567999999977776654332 22223222 100
Q ss_pred ece--------eeeeeccCCCCCCCCeEEEEEeCC-CCEEEE--EeCCcEEEEECCCCc---------------------
Q 003871 622 CSK--------FLHSFQTGLVPETTIVNHIQFHPD-QIHLLS--IHEGQIDVYEAPTLN--------------------- 669 (790)
Q Consensus 622 ~~~--------~l~~~~~~~~~~~~~v~~i~~sp~-~~~l~~--~~dg~I~iwd~~~~~--------------------- 669 (790)
... ....+..++. ....++|+|. |.+.++ |.++.=.|.-+..|.
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlR----N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLR----NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--S----EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CCCccccCCCceEEEEEeCCC----ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 000 0011112332 4567999999 766665 444332222222211
Q ss_pred --------eeeeecCCCCCCCeEEEEEec-------CCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccc
Q 003871 670 --------HTSQLVPDKMDLPITYATYSC-------DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 734 (790)
Q Consensus 670 --------~~~~~~~~~h~~~v~~l~~s~-------dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 734 (790)
++..+ .+...+..+.|.. +|.++++.-..+.|...++..+..+..... +. .+. ...
T Consensus 237 ~~~~~~~~P~~~~---~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~-~~r-- 307 (331)
T PF07995_consen 237 PSCPGFVPPVFAY---PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FL-GGF-GGR-- 307 (331)
T ss_dssp SS-TTS---SEEE---TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--EC-TTS-SS---
T ss_pred cCCCCcCccceee---cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--cc-ccC-CCC--
Confidence 11111 1235677777764 455666666667888888875533222110 00 011 223
Q ss_pred eEEEEEecCCCCEEEEEeCCCcEE
Q 003871 735 PLVIAAHPLEPNRIALGLTNGRVH 758 (790)
Q Consensus 735 ~~~v~~sp~d~~~las~s~Dg~i~ 758 (790)
+.++++.| ||.+.++.+.+|.|+
T Consensus 308 ~~~v~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 308 PRDVAQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEEET-TSEEEEEE-TTTTEE
T ss_pred ceEEEEcC-CCeEEEEECCCCeEe
Confidence 45999999 899988888888774
No 442
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.98 E-value=29 Score=38.89 Aligned_cols=153 Identities=19% Similarity=0.092 Sum_probs=77.1
Q ss_pred eEEEE---eCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCC
Q 003871 558 LFAFG---FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 634 (790)
Q Consensus 558 ~l~sg---s~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~ 634 (790)
+++.+ ...+...++|.. |.....+.........+...++|.+++..+ ..+..+|+.+ +...... ++.+..
T Consensus 117 ~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~---l~~~~~ 189 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYD---LPGGYY 189 (477)
T ss_dssp EEEEETT--BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE-----TTEE
T ss_pred EEEeCCCCCCCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCC-CEEEeee---cCCccc
Confidence 45554 244567777754 666555543222221266778998877655 7888889875 3322222 222100
Q ss_pred CCCCCeEEEEEeCCCCEEEEEe--------------CCcEEEEECCCCceeeeecCCCC---------------------
Q 003871 635 PETTIVNHIQFHPDQIHLLSIH--------------EGQIDVYEAPTLNHTSQLVPDKM--------------------- 679 (790)
Q Consensus 635 ~~~~~v~~i~~sp~~~~l~~~~--------------dg~I~iwd~~~~~~~~~~~~~~h--------------------- 679 (790)
..-..+..-|+|.+|+.+. ...|..+| .+|+.+..+....|
T Consensus 190 ---~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~ 265 (477)
T PF05935_consen 190 ---DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSG 265 (477)
T ss_dssp ----B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SS
T ss_pred ---ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCC
Confidence 0113467778888888643 22366666 66766655322111
Q ss_pred ----CCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCeEEEEeccc
Q 003871 680 ----DLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLT 721 (790)
Q Consensus 680 ----~~~v~~l~~s~-dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~ 721 (790)
=..+.++.+.+ ++.+|+++-.-..|...|..+++....+..+
T Consensus 266 ~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 266 GGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp TTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 02478999998 5555555555568999999999988887644
No 443
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.83 E-value=27 Score=37.86 Aligned_cols=150 Identities=8% Similarity=-0.011 Sum_probs=82.6
Q ss_pred EEEEEcCCC-eEEEEeCCCcEE-EEeCCCCceE-EEE-cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeece
Q 003871 549 TYFILLPQD-LFAFGFDDSSIL-VHCPCTKKTK-AKL-KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 624 (790)
Q Consensus 549 ~~l~~s~~g-~l~sgs~dg~I~-iwd~~~~~~~-~~l-~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~ 624 (790)
..+..+++| .++.|. .|.+. -||- |... ... ......++++.+.+++..++++ .+|.+.. ....++.-...
T Consensus 242 ~~v~~~~dG~~~~vg~-~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~ 316 (398)
T PLN00033 242 STVNRSPDGDYVAVSS-RGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF 316 (398)
T ss_pred eeEEEcCCCCEEEEEC-CccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence 445566777 555554 34433 3442 3221 111 2234568899999998877665 5566543 33332210000
Q ss_pred eeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeec-CCCCCCCeEEEEEecCCCEEEEEEcCCe
Q 003871 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLV-PDKMDLPITYATYSCDGKCIYVSCKSGH 703 (790)
Q Consensus 625 ~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~sgs~dg~ 703 (790)
.+........+ ..+.++.|.+++..+++|..|.+.... ..|+.-.... ...-....+.+.|.++++.+++| .+|.
T Consensus 317 ~f~~~~~~~~~--~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~ 392 (398)
T PLN00033 317 DFEEADIKSRG--FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGV 392 (398)
T ss_pred ceeecccCCCC--cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcE
Confidence 12211111110 358899999999998889888776664 3344322222 11124568899998777666654 5777
Q ss_pred EEEE
Q 003871 704 VKVF 707 (790)
Q Consensus 704 i~vw 707 (790)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 6544
No 444
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.65 E-value=28 Score=37.60 Aligned_cols=198 Identities=10% Similarity=-0.050 Sum_probs=109.6
Q ss_pred CcEEEEe-cCCeEEEEECCCCcEEEEEcCCC--CCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCC-CCEEE
Q 003871 516 GSHLFSA-SGGKISIFSLETFQTLATFANPP--PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITC 591 (790)
Q Consensus 516 ~~~l~s~-sdg~I~vwd~~~~~~~~~~~~~~--~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-~~v~~ 591 (790)
+..++.+ .+|.|.-.|.++++.+....... ..+..-.+..+|.++.++.+|.++.+|..+|+.+....... ..+..
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 4444444 48999999999988776544321 22333333336688899999999999998898887776544 11222
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEe--CCcEEEEECCCCc
Q 003871 592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--EGQIDVYEAPTLN 669 (790)
Q Consensus 592 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--dg~I~iwd~~~~~ 669 (790)
-..-.++ .+..++.++.+...|..+|+.........- .. ..+..-....++..++... ++.+.-.|..+|.
T Consensus 148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~-----~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 148 PPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP-LS-----LSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred CcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc-cc-----cccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence 2222233 344444788999999888775443322210 00 0111101122333333333 4567777887777
Q ss_pred eeeeecCCC--CCCCeEEE-EEec----CCCEEEEEEcCCeEEEEECCCCeEEEEecc
Q 003871 670 HTSQLVPDK--MDLPITYA-TYSC----DGKCIYVSCKSGHVKVFDTSTLELRCQINL 720 (790)
Q Consensus 670 ~~~~~~~~~--h~~~v~~l-~~s~----dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~ 720 (790)
..-...... ....+... .+.. .+.-++.++.++.+...|..+|+.+-.+..
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 665532110 01111001 1110 122346777788899999999998877654
No 445
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.49 E-value=3.7 Score=48.54 Aligned_cols=153 Identities=12% Similarity=0.111 Sum_probs=88.9
Q ss_pred CCEEEEEEeCCCCEEEE--EeCCCcEEEEECCCCceee---ceeeeeeccCCCCCCCCeEEEEEeCCCCE--EEEEeCCc
Q 003871 587 NRITCLAYSLSLNVLVS--SGADAQLCVWDAVGWKKLC---SKFLHSFQTGLVPETTIVNHIQFHPDQIH--LLSIHEGQ 659 (790)
Q Consensus 587 ~~v~~l~~spdg~~l~s--~s~dg~I~vwd~~~~~~~~---~~~l~~~~~~~~~~~~~v~~i~~sp~~~~--l~~~~dg~ 659 (790)
-++..+...+|+...++ .+.+-.|..||++.-.... ..++........ ......++.|.|.-.. +++..|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~e-k~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFE-KPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhc-cccccccccccCCccchhhhhccccc
Confidence 35666777788765443 3344478999998632111 122211000000 0034567788885332 23348888
Q ss_pred EEEEECCCCc-eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEE
Q 003871 660 IDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 738 (790)
Q Consensus 660 I~iwd~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 738 (790)
|++.-+.... .+..+ ......++++|+|.|+.++.|-..|++.-|... ++....+..... ....+++++
T Consensus 180 l~V~~~~~~~~~v~s~---p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~------~e~yrvl~v 249 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF---PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPV------EENYRVLSV 249 (1405)
T ss_pred hhhhhhhhhhhhhccc---CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCc------CCCcceeEE
Confidence 8887764322 22222 236789999999999999999999999988754 333333322111 113456799
Q ss_pred EEecCCCCEEEEE
Q 003871 739 AAHPLEPNRIALG 751 (790)
Q Consensus 739 ~~sp~d~~~las~ 751 (790)
+|-. ...++++-
T Consensus 250 ~Wl~-t~eflvvy 261 (1405)
T KOG3630|consen 250 TWLS-TQEFLVVY 261 (1405)
T ss_pred EEec-ceeEEEEe
Confidence 9987 55665543
No 446
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.34 E-value=28 Score=37.18 Aligned_cols=199 Identities=11% Similarity=0.019 Sum_probs=107.4
Q ss_pred EEEEcCCC----eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeC----CCCE--EEEEeC-C---CcEEEEEC
Q 003871 550 YFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL----SLNV--LVSSGA-D---AQLCVWDA 615 (790)
Q Consensus 550 ~l~~s~~g----~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~sp----dg~~--l~s~s~-d---g~I~vwd~ 615 (790)
.+-.+|.. +++....++-+.+||+. |+.+..+. .+.++.+..-. +|+. |+.++. + .+|++|-+
T Consensus 58 AIWvnp~dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~i 134 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRI 134 (381)
T ss_dssp EEE--SS-GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEE
T ss_pred cEecCCCCcccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEe
Confidence 34455544 67777788899999987 67777764 24555554422 3443 444442 2 46999977
Q ss_pred CC--Cceeeceee-eeeccCCCCCCCCeEEEEE--eC-CCCEEEE--EeCCcEEEEECC---CC----ceeeeecCCCCC
Q 003871 616 VG--WKKLCSKFL-HSFQTGLVPETTIVNHIQF--HP-DQIHLLS--IHEGQIDVYEAP---TL----NHTSQLVPDKMD 680 (790)
Q Consensus 616 ~~--~~~~~~~~l-~~~~~~~~~~~~~v~~i~~--sp-~~~~l~~--~~dg~I~iwd~~---~~----~~~~~~~~~~h~ 680 (790)
.. +........ ..+.... ..+..+++ +| +|.+.+. ..+|.+..|.+. .+ +.+++|.. .
T Consensus 135 d~~~g~L~~v~~~~~p~~~~~----~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~ 207 (381)
T PF02333_consen 135 DPDTGELTDVTDPAAPIATDL----SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---G 207 (381)
T ss_dssp ETTTTEEEE-CBTTC-EE-SS----SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----S
T ss_pred cCCCCcceEcCCCCccccccc----ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---C
Confidence 53 322110000 0011111 24566665 44 4555444 477877766653 33 45777764 4
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-----eEEEEeccccccCCCCcccccceEEEEEecCCC-C-EEEEEeC
Q 003871 681 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTL-----ELRCQINLTAYAQPGTISLELYPLVIAAHPLEP-N-RIALGLT 753 (790)
Q Consensus 681 ~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~-----~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~-~-~las~s~ 753 (790)
..+-.++......+|+.|-++--|.-|+.+.. +++..... ++-...+--+++-..+ ++ . +|||.-.
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g------~~l~aDvEGlaly~~~-~g~gYLivSsQG 280 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADG------DGLVADVEGLALYYGS-DGKGYLIVSSQG 280 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSS------SSB-S-EEEEEEEE-C-CC-EEEEEEEGG
T ss_pred CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccc------cccccCccceEEEecC-CCCeEEEEEcCC
Confidence 57889999988899999999988888888632 22222111 1223455544444444 33 3 4555556
Q ss_pred CCcEEEEecCCC
Q 003871 754 NGRVHVIEPLES 765 (790)
Q Consensus 754 Dg~i~iW~~~~~ 765 (790)
+++..||+....
T Consensus 281 ~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 281 DNSFAVYDREGP 292 (381)
T ss_dssp GTEEEEEESSTT
T ss_pred CCeEEEEecCCC
Confidence 779999998764
No 447
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.33 E-value=3.8 Score=43.52 Aligned_cols=146 Identities=8% Similarity=0.083 Sum_probs=90.4
Q ss_pred eeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccc
Q 003871 408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQ 487 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~ 487 (790)
..+...|.+.=|.+.... ......+.+ ...++|.++.||+|.+.+|+--.+++|.+.+......
T Consensus 37 lfavrSggatgvvvkgpn-dDVpiSfdm---~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~------------ 100 (657)
T KOG2377|consen 37 LFAVRSGGATGVVVKGPN-DDVPISFDM---DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS------------ 100 (657)
T ss_pred EEEEecCCeeEEEEeCCC-CCCCceeee---cCCCceeEEEeccCcceEEEEecCceEEEEecCCCch------------
Confidence 445555677777776422 222233332 2467999999999999999999999999998754322
Q ss_pred cccCCCceeeeecccCCCCCCeEEEEec-CcEEEEecCCeEEEEECCCC-cEEEEEcCCCCCeEEEEEcCCC---eEEEE
Q 003871 488 LYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETF-QTLATFANPPPIATYFILLPQD---LFAFG 562 (790)
Q Consensus 488 i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~sdg~I~vwd~~~~-~~~~~~~~~~~~v~~l~~s~~g---~l~sg 562 (790)
...........+..|....|+ +.-+|...+..+-+|-.... +.++..+.+...|.-..|.++. .++++
T Consensus 101 -------~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 101 -------QLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred -------hhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 000000011245568899999 77777777766777765443 3344556677788888888887 34444
Q ss_pred eCCCcEEEEeCCCC
Q 003871 563 FDDSSILVHCPCTK 576 (790)
Q Consensus 563 s~dg~I~iwd~~~~ 576 (790)
-..+++.=+.++++
T Consensus 174 ~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 174 VLENVLNPFHFRAG 187 (657)
T ss_pred ccccccccEEEeec
Confidence 34444444444443
No 448
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.24 E-value=9 Score=46.37 Aligned_cols=144 Identities=13% Similarity=0.129 Sum_probs=90.9
Q ss_pred EeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEE--------eCCCCEEEEEeCCCcEEEEECCCCceee-----ceeeee
Q 003871 562 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY--------SLSLNVLVSSGADAQLCVWDAVGWKKLC-----SKFLHS 628 (790)
Q Consensus 562 gs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~--------spdg~~l~s~s~dg~I~vwd~~~~~~~~-----~~~l~~ 628 (790)
.+.|+.+.+|+..++.....+.+-+..|..|.. -|.=++++....--.|.++-+.-.+... ...+.
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~- 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK- 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee-
Confidence 356889999999998777777776666666543 2333454444445566666543211100 00111
Q ss_pred eccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEE--EECCCC---c-e----------------eeeecCCCCCCCeEEE
Q 003871 629 FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV--YEAPTL---N-H----------------TSQLVPDKMDLPITYA 686 (790)
Q Consensus 629 ~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~i--wd~~~~---~-~----------------~~~~~~~~h~~~v~~l 686 (790)
+.... ..|+++....+|+.+.+|.||.++= |....+ + + +-.+. ..+..+|..+
T Consensus 174 i~~dg----~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~qi 248 (1311)
T KOG1900|consen 174 ISVDG----VSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIRQI 248 (1311)
T ss_pred eecCC----ceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcceee
Confidence 22211 4789999899999999998885432 222211 1 1 01111 1346789999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCC
Q 003871 687 TYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 687 ~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
+.....+.+++-++.|+|.+||+..
T Consensus 249 ~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 249 TIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EeccccceeeeeccCceEEEEEccC
Confidence 9998888999999999999999986
No 449
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.90 E-value=1.6 Score=43.03 Aligned_cols=75 Identities=9% Similarity=0.159 Sum_probs=51.4
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeece-eeeeeccCC----CCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCC
Q 003871 594 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSK-FLHSFQTGL----VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL 668 (790)
Q Consensus 594 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~-~l~~~~~~~----~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~ 668 (790)
+..+++++++.+.+|.+++||+.+++..... .+..+.... ......|..+.++.+|.-+++-.+|..+.||..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999987654322 222122110 01115788999999998887767788899987644
No 450
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.77 E-value=30 Score=36.60 Aligned_cols=152 Identities=14% Similarity=0.059 Sum_probs=86.1
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCc------EEEEeCCC--C--ceE-----EEEcCCCC--------CEEEEEEeCCCCE
Q 003871 545 PPIATYFILLPQD-LFAFGFDDSS------ILVHCPCT--K--KTK-----AKLKGHQN--------RITCLAYSLSLNV 600 (790)
Q Consensus 545 ~~~v~~l~~s~~g-~l~sgs~dg~------I~iwd~~~--~--~~~-----~~l~~h~~--------~v~~l~~spdg~~ 600 (790)
-+.++.+.+.+++ .+++-+++|. ++.+++.. + ..+ ..+..-.+ ..-++++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 3457888888666 6666777777 66655543 1 111 11111111 3447888778888
Q ss_pred EEEEeCC------CcEEEEECCCCceeeceeeee-e-cc----CCCCCCCCeEEEEEeCCCCEEEEE------eCC----
Q 003871 601 LVSSGAD------AQLCVWDAVGWKKLCSKFLHS-F-QT----GLVPETTIVNHIQFHPDQIHLLSI------HEG---- 658 (790)
Q Consensus 601 l~s~s~d------g~I~vwd~~~~~~~~~~~l~~-~-~~----~~~~~~~~v~~i~~sp~~~~l~~~------~dg---- 658 (790)
+++.-.+ ..|+.++.. |+......+.. + +. ...+.....-+++++|+|+.|++. .|+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8876666 788888877 44322221111 1 00 111123678899999999955542 233
Q ss_pred -------cEEEEECCC-CceeeeecC--CC-----CCCCeEEEEEecCCCEEEE
Q 003871 659 -------QIDVYEAPT-LNHTSQLVP--DK-----MDLPITYATYSCDGKCIYV 697 (790)
Q Consensus 659 -------~I~iwd~~~-~~~~~~~~~--~~-----h~~~v~~l~~s~dg~~l~s 697 (790)
.|..||..+ +.....+.. .. ....+..+.+-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 134455544 333333221 11 3577899999999997763
No 451
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.49 E-value=28 Score=35.96 Aligned_cols=168 Identities=13% Similarity=0.054 Sum_probs=89.9
Q ss_pred eEEEEECCCCcEEEEEcCC------CCCeEEEEEcCC------CeEE-EEeCCCcEEEEeCCCCceEEEEcCCC------
Q 003871 526 KISIFSLETFQTLATFANP------PPIATYFILLPQ------DLFA-FGFDDSSILVHCPCTKKTKAKLKGHQ------ 586 (790)
Q Consensus 526 ~I~vwd~~~~~~~~~~~~~------~~~v~~l~~s~~------g~l~-sgs~dg~I~iwd~~~~~~~~~l~~h~------ 586 (790)
+|.+||+.+++.++++.-+ ...+..+.+... +++. +=+..+.|.++|+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6778999999988887532 334667777651 2333 33444689999999987665554321
Q ss_pred -------------CCEEEEEEeC---CCCEEEEEeCCCcEEEEECCCC-----ceeec----eeeeeeccCCCCCCCCeE
Q 003871 587 -------------NRITCLAYSL---SLNVLVSSGADAQLCVWDAVGW-----KKLCS----KFLHSFQTGLVPETTIVN 641 (790)
Q Consensus 587 -------------~~v~~l~~sp---dg~~l~s~s~dg~I~vwd~~~~-----~~~~~----~~l~~~~~~~~~~~~~v~ 641 (790)
..+..++.+| ++++|......+. ++|-+.+. ..... ..++.+ +..+ ....
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~l--G~k~--~~s~ 189 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDL--GDKG--SQSD 189 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEE--EE-----SEC
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceec--cccC--CCCc
Confidence 2255566655 5556655543322 23333221 00000 011111 1110 2556
Q ss_pred EEEEeCCCCEEEEE-eCCcEEEEECCCCc---eeeeecCCCC-CCCeEEEEEec--CCCEEEEE
Q 003871 642 HIQFHPDQIHLLSI-HEGQIDVYEAPTLN---HTSQLVPDKM-DLPITYATYSC--DGKCIYVS 698 (790)
Q Consensus 642 ~i~~sp~~~~l~~~-~dg~I~iwd~~~~~---~~~~~~~~~h-~~~v~~l~~s~--dg~~l~sg 698 (790)
.++++++|..+++- ..+.|..|+..+.- ....+..... -..+.++.+.+ +|.+.+..
T Consensus 190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 190 GMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred eEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 78899988877774 78899999987511 1222322222 35678888888 66654444
No 452
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.22 E-value=37 Score=36.90 Aligned_cols=151 Identities=11% Similarity=0.014 Sum_probs=82.4
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCC
Q 003871 589 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL 668 (790)
Q Consensus 589 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~ 668 (790)
...+..++||.+++.+..-..++-||--. .. ..++. .+. . ..++++.+.+++..++++..|.+..= ...+
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~--~~-W~~~~-~~~--~---~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G 310 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ--PY-WQPHN-RAS--A---RRIQNMGWRADGGLWLLTRGGGLYVS-KGTG 310 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCC--cc-eEEec-CCC--c---cceeeeeEcCCCCEEEEeCCceEEEe-cCCC
Confidence 44556677887777665443333444322 00 01111 111 1 57899999999999988877775443 3334
Q ss_pred c-----eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecC
Q 003871 669 N-----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 743 (790)
Q Consensus 669 ~-----~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~ 743 (790)
+ .............+.++.|.+++..+++ +.+|.+.... ..|+.-....... +. ....+ .+.|.+
T Consensus 311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~----~~-~~~ly--~v~f~~- 380 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGAD----NI-AANLY--SVKFFD- 380 (398)
T ss_pred CcccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccC----CC-Cccee--EEEEcC-
Confidence 3 1222211111345899999988776555 4677766653 4444322211000 11 23456 888877
Q ss_pred CCCEEEEEeCCCcEEEE
Q 003871 744 EPNRIALGLTNGRVHVI 760 (790)
Q Consensus 744 d~~~las~s~Dg~i~iW 760 (790)
+++-+++ +.+|.|.-|
T Consensus 381 ~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVL-GNDGVLLRY 396 (398)
T ss_pred CCceEEE-eCCcEEEEe
Confidence 5555555 578877655
No 453
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.20 E-value=22 Score=34.39 Aligned_cols=117 Identities=13% Similarity=-0.012 Sum_probs=69.3
Q ss_pred EEEEcCCCeEEEEeCCCcEEEEeCCC--CceEEEEcCCCCCEEEEEEeCCCCEEEEEeCC------CcEEEE-ECCCCce
Q 003871 550 YFILLPQDLFAFGFDDSSILVHCPCT--KKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVW-DAVGWKK 620 (790)
Q Consensus 550 ~l~~s~~g~l~sgs~dg~I~iwd~~~--~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d------g~I~vw-d~~~~~~ 620 (790)
.++.++.+.++.+.....|.+|++.+ .+....|..- +.|..++++..|+++++--.+ ..+|+| |.+....
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 44444534333335567899999883 3456666643 789999999999999985432 255664 2222100
Q ss_pred eeceeeeeeccCCC------------------CCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCC
Q 003871 621 LCSKFLHSFQTGLV------------------PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL 668 (790)
Q Consensus 621 ~~~~~l~~~~~~~~------------------~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~ 668 (790)
...++.....||. |...++.+++-.|-..-|++|.++.+.+|.+...
T Consensus 101 -~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 101 -ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred -cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 0011110000100 1224778888888777788888889999987543
No 454
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.07 E-value=9.6 Score=41.37 Aligned_cols=48 Identities=15% Similarity=-0.001 Sum_probs=35.8
Q ss_pred cceEEEEEecCC--CCEEEEEeCCCcEEEEecCCCccccccCC-CCCCCCc
Q 003871 733 LYPLVIAAHPLE--PNRIALGLTNGRVHVIEPLESEVEWGKLP-FTDSREF 780 (790)
Q Consensus 733 v~~~~v~~sp~d--~~~las~s~Dg~i~iW~~~~~~~~w~~~~-~~~~~~~ 780 (790)
+....++|||+. ...|..-+.|.+||+|+..+....|..++ |-..++.
T Consensus 166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpgepgRS~tn 216 (741)
T KOG4460|consen 166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGEPGRSPTN 216 (741)
T ss_pred eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCCCcCCCCcc
Confidence 345588999944 46788888999999999999988887654 4444444
No 455
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=88.91 E-value=32 Score=38.05 Aligned_cols=271 Identities=13% Similarity=0.099 Sum_probs=134.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEE
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 519 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l 519 (790)
..+|.++.+...|. +-+|+.||- ..||.. +++.++.... ....+|..+..+ +..+
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dGL-~~fd~~---------------------~gkalql~s~-~~dk~I~al~~d~qg~L 219 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDGL-SYFDAG---------------------RGKALQLASP-PLDKAINALIADVQGRL 219 (671)
T ss_pred CccceeeeeeccCc-EEEecCCcc-eEEccc---------------------cceEEEcCCC-cchhhHHHHHHHhcCcE
Confidence 57788999998886 667777774 334433 3333332211 123566666666 7788
Q ss_pred EEecCCeEEEEECCCCcEEEEEc-CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCC--CCCEEEEEEeC
Q 003871 520 FSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSL 596 (790)
Q Consensus 520 ~s~sdg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h--~~~v~~l~~sp 596 (790)
..|++.-+.+.+.+..+...-.. -+...|..+.-..+|.+-.|+..|-.+.--.+.+-.....+.| -+.|+++....
T Consensus 220 WVGTdqGv~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~ 299 (671)
T COG3292 220 WVGTDQGVYLQEAEGWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDT 299 (671)
T ss_pred EEEeccceEEEchhhccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeecc
Confidence 88998778888876522221111 1233454444444447777887775543222222111112222 23566676666
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeC--CCCEEEE-EeCCcEEEEECCCCceeee
Q 003871 597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLS-IHEGQIDVYEAPTLNHTSQ 673 (790)
Q Consensus 597 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp--~~~~l~~-~~dg~I~iwd~~~~~~~~~ 673 (790)
+|+ +-+++.++.+++-+..- .. ...+. ...+ ..+...+..| .+..+-. -+.|.+.+-+-.+|..+++
T Consensus 300 dGs-LWv~t~~giv~~~~a~w-~~--ma~in-~~dG-----~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~s 369 (671)
T COG3292 300 DGS-LWVGTYGGIVRYLTADW-KR--MAVIN-DSDG-----GVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRS 369 (671)
T ss_pred CCC-EeeeccCceEEEecchh-hh--eeeee-cCCC-----chhhhhccCchhcccceeeccccceEEEecCCCCcEEEE
Confidence 775 44556666655433321 10 01111 1111 1111122222 1111111 1223344444455665555
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEe
Q 003871 674 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 752 (790)
Q Consensus 674 ~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s 752 (790)
.... ....|+.+++..+|+ +-.|+...-+..|+-.+ +-...... |--..+|. ++.-.| +++ |..|+
T Consensus 370 v~q~-Rg~nit~~~~d~~g~-lWlgs~q~GLsrl~n~n~~avlde~a-------gl~ss~V~--aived~-dns-LWIGT 436 (671)
T COG3292 370 VHQL-RGMNITTTLEDSRGR-LWLGSMQNGLSRLDNKNEWAVLDEDA-------GLPSSEVS--AIVEDP-DNS-LWIGT 436 (671)
T ss_pred eeec-cccccchhhhccCCc-EEEEecccchhhhccCCccccccccc-------CCccccee--eeeecC-CCC-EEEec
Confidence 4321 245677777877554 44555554455666665 32222221 22233555 777778 555 77787
Q ss_pred CCCcEE
Q 003871 753 TNGRVH 758 (790)
Q Consensus 753 ~Dg~i~ 758 (790)
.+|.++
T Consensus 437 s~Glvk 442 (671)
T COG3292 437 SGGLVK 442 (671)
T ss_pred cCCeEe
Confidence 787554
No 456
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.90 E-value=15 Score=42.38 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=70.4
Q ss_pred CeEEEEEeC--CCCEEEEE-eCCcEEEEECCC-------C----c---------eeeeecCCCCCCCeEEEEEe--cCCC
Q 003871 639 IVNHIQFHP--DQIHLLSI-HEGQIDVYEAPT-------L----N---------HTSQLVPDKMDLPITYATYS--CDGK 693 (790)
Q Consensus 639 ~v~~i~~sp--~~~~l~~~-~dg~I~iwd~~~-------~----~---------~~~~~~~~~h~~~v~~l~~s--~dg~ 693 (790)
.|+.|.... +...|+++ .||.|.+|.+++ . . +...+ .-...+++++++ ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~---~v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL---RVGASAWGLDIHDYKKSR 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe---ecCCceeEEEEEecCcce
Confidence 355554443 23445554 899999997631 0 0 11111 125678999998 7888
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCC----CC-EEEEEeCCCcEEEEec
Q 003871 694 CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE----PN-RIALGLTNGRVHVIEP 762 (790)
Q Consensus 694 ~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d----~~-~las~s~Dg~i~iW~~ 762 (790)
+||+++....|.||-............ . ..+.+.|- +|+|-+.+ |. .|++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~--s---~~~~hNIP--~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVP--S---HQHSHNIP--NVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEecccccccccc--c---cccccCCC--eeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999998888888887654321111110 0 01234566 88888743 22 7888999999999888
No 457
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.78 E-value=7.7 Score=41.13 Aligned_cols=111 Identities=15% Similarity=0.087 Sum_probs=60.8
Q ss_pred CeEEEEEeCCCCEEEEEeCCcEEEEECCCCce---eeeec--CCCCCCCeEEEEEecC---CCEEE-EEEcC--------
Q 003871 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH---TSQLV--PDKMDLPITYATYSCD---GKCIY-VSCKS-------- 701 (790)
Q Consensus 639 ~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~---~~~~~--~~~h~~~v~~l~~s~d---g~~l~-sgs~d-------- 701 (790)
..++|+|.|||+.+++-..|.|++++ ..+.. +..+. ..........++++|+ ..+|+ +.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 46899999999988887899999999 34443 22221 1123567899999994 33443 33321
Q ss_pred CeEEEEECCCC--eE---EEEeccccc-cCCCCcccccceEEEEEecCCCCEEEEEeCCCc
Q 003871 702 GHVKVFDTSTL--EL---RCQINLTAY-AQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 756 (790)
Q Consensus 702 g~i~vwd~~~~--~~---~~~~~~~~~-~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~ 756 (790)
..|.-|....+ .. ...+..... ....| . .. .++|.| ||.+.++.++.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H-~--g~--~l~fgp-DG~LYvs~G~~~~ 136 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNH-N--GG--GLAFGP-DGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS----EE--EEEE-T-TSEEEEEEB-TTT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCC-C--Cc--cccCCC-CCcEEEEeCCCCC
Confidence 34555555443 11 111111111 01123 2 23 799999 8887777776544
No 458
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.65 E-value=1.7 Score=29.96 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=24.3
Q ss_pred CeEEEEEeCCCC---EEEEE-eCCcEEEEECCCC
Q 003871 639 IVNHIQFHPDQI---HLLSI-HEGQIDVYEAPTL 668 (790)
Q Consensus 639 ~v~~i~~sp~~~---~l~~~-~dg~I~iwd~~~~ 668 (790)
.+.++.|+|++. +|+.+ ..|.|.|+|++++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 689999998544 77777 7789999999853
No 459
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.61 E-value=20 Score=40.90 Aligned_cols=51 Identities=12% Similarity=0.166 Sum_probs=38.4
Q ss_pred CCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 003871 565 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (790)
Q Consensus 565 dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~ 617 (790)
--.|+||+.. |..+..+.-..+.+-.+.|+.+. .|++...||++++|++-.
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence 3468889865 76666654444578899999765 566778999999999976
No 460
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.57 E-value=21 Score=40.03 Aligned_cols=130 Identities=12% Similarity=-0.041 Sum_probs=72.3
Q ss_pred EEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCC-CCeEEEEEecCCCEEEEEEc-------------CCeEEEEE
Q 003871 643 IQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMD-LPITYATYSCDGKCIYVSCK-------------SGHVKVFD 708 (790)
Q Consensus 643 i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~-~~v~~l~~s~dg~~l~sgs~-------------dg~i~vwd 708 (790)
+..-++|.+++... ..++.+|.. |+.+..+...... ..=..+..-|+|++|+.+.. +..|..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 66678887776544 788889984 7766655432210 01135667799999987772 23477778
Q ss_pred CCCCeEEEEecccccc-CC----------------CCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCcccccc
Q 003871 709 TSTLELRCQINLTAYA-QP----------------GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 771 (790)
Q Consensus 709 ~~~~~~~~~~~~~~~~-~~----------------gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~ 771 (790)
.+|+.+..+.....+ +. +...+.....++.+.|.++.+++|+-.-..|...|..+++-.|..
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 889888877643222 00 111223445699999966667777655568999998999999987
Q ss_pred CCCC
Q 003871 772 LPFT 775 (790)
Q Consensus 772 ~~~~ 775 (790)
.++.
T Consensus 310 g~~~ 313 (477)
T PF05935_consen 310 GPPG 313 (477)
T ss_dssp S-ST
T ss_pred CCCC
Confidence 7653
No 461
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.12 E-value=18 Score=32.06 Aligned_cols=107 Identities=16% Similarity=0.103 Sum_probs=65.3
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCC--------ceEEEEcCCCCCEEEEEEeC-----CCCEEEEEeCCCcEEEEECC
Q 003871 551 FILLPQD-LFAFGFDDSSILVHCPCTK--------KTKAKLKGHQNRITCLAYSL-----SLNVLVSSGADAQLCVWDAV 616 (790)
Q Consensus 551 l~~s~~g-~l~sgs~dg~I~iwd~~~~--------~~~~~l~~h~~~v~~l~~sp-----dg~~l~s~s~dg~I~vwd~~ 616 (790)
-.|.... .|+.++.-|.|.|++.... ..+..+. -...|++++-.+ +...|+.|+ ...+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 3454445 7888888899999986533 2333343 345677776544 234566665 5689999998
Q ss_pred CCceeeceeeeeeccCCCCCCCCeEEEEEeC----CCCEEEEEeCCcEEEEECCCCc
Q 003871 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHP----DQIHLLSIHEGQIDVYEAPTLN 669 (790)
Q Consensus 617 ~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp----~~~~l~~~~dg~I~iwd~~~~~ 669 (790)
...-...+.+. ..+.++.+-. +...+++|.+..|.-||....+
T Consensus 82 ~N~d~Fyke~~----------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 82 NNSDLFYKEVP----------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cCchhhhhhCc----------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 75433222222 4677777643 3455666777777777775433
No 462
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.69 E-value=35 Score=34.87 Aligned_cols=226 Identities=15% Similarity=0.138 Sum_probs=114.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccC--CCCCCeEEEEec--Cc-
Q 003871 443 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA--DPKDSISCFALR--GS- 517 (790)
Q Consensus 443 ~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~V~~l~~s--~~- 517 (790)
.-|.|+++|.+.+-++....+...+||......+ |.. ..-........ ......+.+.|+ ..
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~-g~~------------~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F 90 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQP-LVQ------------DPLVVVIPAPPPLAAEGTPTGQVFNGSDTF 90 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCccccc-CCc------------cceEEEecCCCCCCCCCCccEEEEeCCCce
Confidence 3588999999988888888899999998622110 000 00000000000 012334445444 11
Q ss_pred -----------EEEEec-CCeEEEEECCCCcE-----EEEEc-CCCCCe-EEEEEcCC--C-eEEEE-eCCCcEEEEeCC
Q 003871 518 -----------HLFSAS-GGKISIFSLETFQT-----LATFA-NPPPIA-TYFILLPQ--D-LFAFG-FDDSSILVHCPC 574 (790)
Q Consensus 518 -----------~l~s~s-dg~I~vwd~~~~~~-----~~~~~-~~~~~v-~~l~~s~~--g-~l~sg-s~dg~I~iwd~~ 574 (790)
.++.++ ||+|.-|...-+.. ...+. .....| ..+++... + +|..+ -..++|.++|-.
T Consensus 91 ~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 91 VVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 134444 89999998532221 12222 112333 44555533 3 44444 457789998854
Q ss_pred CCceE--EEEcCC-----CC-----------CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeecc-CCCC
Q 003871 575 TKKTK--AKLKGH-----QN-----------RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-GLVP 635 (790)
Q Consensus 575 ~~~~~--~~l~~h-----~~-----------~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~-~~~~ 635 (790)
=.+.. ..+... -. .|+-..-.++++.=+.|..-|.|-+||... ..++.+.. +.-
T Consensus 171 f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G------~l~~r~as~g~L- 243 (336)
T TIGR03118 171 FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG------QLLRRVASSGRL- 243 (336)
T ss_pred cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC------cEEEEeccCCcc-
Confidence 22111 011100 00 011111122222223334457899999986 33332322 222
Q ss_pred CCCCeEEEEEeC------CCCEEEEE-eCCcEEEEECCCCceeeeecCCCC----CCCeEEEEEec
Q 003871 636 ETTIVNHIQFHP------DQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKM----DLPITYATYSC 690 (790)
Q Consensus 636 ~~~~v~~i~~sp------~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h----~~~v~~l~~s~ 690 (790)
...+.|+..| .+.+|+.- .||+|..||..+++.+..+..... -..++.++|..
T Consensus 244 --NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 244 --NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred --cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 3556777766 34555553 799999999999988877754211 12345666654
No 463
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.66 E-value=0.075 Score=56.27 Aligned_cols=145 Identities=13% Similarity=0.110 Sum_probs=96.6
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E-eCCcEEEEECC
Q 003871 589 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP 666 (790)
Q Consensus 589 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~I~iwd~~ 666 (790)
.-...|.|.+.-++.++.+..+..||-... ..+...+. +....++|+.++..+++ . ..+.+++||+.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq-----~~le~n~t------g~aldm~wDkegdvlavlAek~~piylwd~n 105 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQ-----VILELNPT------GKALDMAWDKEGDVLAVLAEKTGPIYLWDVN 105 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcc-----eecccCCc------hhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence 334567887766888888889999997651 22221111 45677889998888887 4 78899999997
Q ss_pred CCceeeeec-CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCC
Q 003871 667 TLNHTSQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 745 (790)
Q Consensus 667 ~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 745 (790)
+... .++. +..+.... +.|++.+..++.|...|.+.|++..+.+...+. |.|...+. +.++.+ .
T Consensus 106 ~eyt-qqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~--------Gkh~RRgt--q~av~l--E 170 (615)
T KOG2247|consen 106 SEYT-QQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM--------GKHQRRGT--QIAVTL--E 170 (615)
T ss_pred hhhH-HHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhh--------ccccccee--EEEecc--c
Confidence 5432 2222 11223333 789999999999999999999998877654432 52233444 889988 3
Q ss_pred CEEEEEeCCCcEEE
Q 003871 746 NRIALGLTNGRVHV 759 (790)
Q Consensus 746 ~~las~s~Dg~i~i 759 (790)
++.+.++.|..+.+
T Consensus 171 d~vil~dcd~~L~v 184 (615)
T KOG2247|consen 171 DYVILCDCDNTLSV 184 (615)
T ss_pred ceeeecCcHHHHHH
Confidence 56677776654433
No 464
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.11 E-value=0.62 Score=53.18 Aligned_cols=179 Identities=7% Similarity=-0.008 Sum_probs=98.1
Q ss_pred CCeEEEEECCCCcE-EEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCC--CCceEEE-----EcCCCCCEEEEE
Q 003871 524 GGKISIFSLETFQT-LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC--TKKTKAK-----LKGHQNRITCLA 593 (790)
Q Consensus 524 dg~I~vwd~~~~~~-~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~--~~~~~~~-----l~~h~~~v~~l~ 593 (790)
.+.+++-+..+... ...+++..+.+-.+.|.... .+. -.-|.+.+||++ .|+.... .......+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 45566665543221 01224556667777775544 333 334678888875 3443222 222334455566
Q ss_pred EeC---CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEE-----------EEeCCCCEEEE-EeCC
Q 003871 594 YSL---SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI-----------QFHPDQIHLLS-IHEG 658 (790)
Q Consensus 594 ~sp---dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i-----------~~sp~~~~l~~-~~dg 658 (790)
|.| +.-++..+-.+++|++.+..+... .+..+|. ..++.+ ..||||..++. +.||
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-------~l~rsHs---~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-------SLFRSHS---QRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-------HHHHhcC---CCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 655 556677777888999887765221 2333454 344433 36999999998 5888
Q ss_pred cEEEEE-----CCCCceeeeecCCCCCCCeEEEEEecCC---------CEEEEEEc-CCeEEEEECCCCeEE
Q 003871 659 QIDVYE-----APTLNHTSQLVPDKMDLPITYATYSCDG---------KCIYVSCK-SGHVKVFDTSTLELR 715 (790)
Q Consensus 659 ~I~iwd-----~~~~~~~~~~~~~~h~~~v~~l~~s~dg---------~~l~sgs~-dg~i~vwd~~~~~~~ 715 (790)
.++.|- ...-++...++.+. ..+-.|.-|..+. .++++++. +..+++|.-...++.
T Consensus 258 ~v~f~Qiyi~g~~~~rclhewkphd-~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 258 SVGFYQIYITGKIVHRCLHEWKPHD-KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccceeeeeeeccccHhhhhccCCCC-CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 766554 34445556665532 1232222244321 23344443 466899987766654
No 465
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.10 E-value=10 Score=42.74 Aligned_cols=73 Identities=8% Similarity=0.043 Sum_probs=45.4
Q ss_pred CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEE
Q 003871 679 MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVH 758 (790)
Q Consensus 679 h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~ 758 (790)
|.+.|--+..+..+..|+.-...-.+.++|+.+.+....+.. +.-+.|-| ....++.-+.| .++
T Consensus 336 h~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmilnf--------------csymqwvp-~sdvivaqn~d-nl~ 399 (1636)
T KOG3616|consen 336 HEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMILNF--------------CSYMQWVP-GSDVIVAQNGD-NLC 399 (1636)
T ss_pred ccccccceeccchhhhhhcccccceeEEEEcccchHHHHHHH--------------hhhheecc-CcceEEecCCC-ceE
Confidence 567777777777777677666667788888887653222211 22567888 56666665555 466
Q ss_pred EE-ecCCCcc
Q 003871 759 VI-EPLESEV 767 (790)
Q Consensus 759 iW-~~~~~~~ 767 (790)
|| ++..+++
T Consensus 400 iwyn~d~peq 409 (1636)
T KOG3616|consen 400 IWYNIDAPEQ 409 (1636)
T ss_pred EEecCCcchh
Confidence 66 5554443
No 466
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=87.09 E-value=78 Score=40.03 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=81.4
Q ss_pred EEeCCCcEEEEECCCC--ceeeceeeeeeccCCCC-----CCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCc-eeeee
Q 003871 603 SSGADAQLCVWDAVGW--KKLCSKFLHSFQTGLVP-----ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN-HTSQL 674 (790)
Q Consensus 603 s~s~dg~I~vwd~~~~--~~~~~~~l~~~~~~~~~-----~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~-~~~~~ 674 (790)
.|-.||.|.-||-.+. +....+-+..+..|-.. ..+.|..+.+++...-++-+.+..+.+=-.++.- .-..+
T Consensus 618 v~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~l 697 (1774)
T PF11725_consen 618 VGLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDAL 697 (1774)
T ss_pred eeeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCccc
Confidence 3445899999997652 11111111112222110 1156777777776666665544433321111110 11112
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC
Q 003871 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 754 (790)
Q Consensus 675 ~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D 754 (790)
.+.. ...|..++.-.+ +.+++-...|.+.... ..+..+.. ...|- .+.|. +++... ..+ |.....+
T Consensus 698 ~Gl~-~~~i~a~Avv~~-~~fvald~qg~lt~h~-k~g~p~~l------~~~gl-~G~ik--~l~lD~-~~n-L~Alt~~ 763 (1774)
T PF11725_consen 698 EGLE-DRVITAFAVVND-NKFVALDDQGDLTAHQ-KPGRPVPL------SRPGL-SGEIK--DLALDE-KQN-LYALTST 763 (1774)
T ss_pred cCCC-cCcceeEEEEcC-CceEEeccCCcccccc-CCCCCccC------CCCCC-Ccchh--heeecc-ccc-eeEecCC
Confidence 2222 567888888655 4556667889999988 66663322 12233 45777 666665 444 4555677
Q ss_pred CcEEE-----EecCCC----ccccccCC
Q 003871 755 GRVHV-----IEPLES----EVEWGKLP 773 (790)
Q Consensus 755 g~i~i-----W~~~~~----~~~w~~~~ 773 (790)
|.++- |.-... ...|....
T Consensus 764 G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~ 791 (1774)
T PF11725_consen 764 GELFRLPKEAWQGNAEGDQMAAKWQKVA 791 (1774)
T ss_pred CceeecCHHHhhCcccCCccccCceecc
Confidence 87764 443332 26687643
No 467
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.90 E-value=11 Score=40.78 Aligned_cols=131 Identities=14% Similarity=0.201 Sum_probs=83.9
Q ss_pred CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--------eEEEEeCCCcEEEEeCCC-CceEEE--EcC--CCCCEE
Q 003871 524 GGKISIFSLETFQTLATFANPPPIATYFILLPQD--------LFAFGFDDSSILVHCPCT-KKTKAK--LKG--HQNRIT 590 (790)
Q Consensus 524 dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--------~l~sgs~dg~I~iwd~~~-~~~~~~--l~~--h~~~v~ 590 (790)
...+.-.|++.|+.+.....|..- -+.+.|+. .-++|-.+..|.-.|.+- |..+.. .+. .....+
T Consensus 489 ~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fs 566 (776)
T COG5167 489 RDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFS 566 (776)
T ss_pred cccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccccccc
Confidence 467888899999999988876654 46777764 234565666676667653 322222 111 112223
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECC
Q 003871 591 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 666 (790)
Q Consensus 591 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~ 666 (790)
+..-.. ..++|.||..|-|++||--.-+ ..+...+-. ..|..+..+.+|+++++.....+.+-|++
T Consensus 567 s~~tTe-sGyIa~as~kGDirLyDRig~r------AKtalP~lG---~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 567 SGMTTE-SGYIAAASRKGDIRLYDRIGKR------AKTALPGLG---DAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred cccccc-CceEEEecCCCceeeehhhcch------hhhcCcccc---cceeeeEeecCCcEEEEeecceEEEEecc
Confidence 333333 3489999999999999965411 111111222 57889999999999998777788888875
No 468
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.79 E-value=79 Score=37.93 Aligned_cols=167 Identities=16% Similarity=0.126 Sum_probs=100.4
Q ss_pred CCCCCeEEEEEc---C--CC--eEEEEeCCCcEEEEeCC------C---------CceEEEEcC---CCCCEEEEEEeC-
Q 003871 543 NPPPIATYFILL---P--QD--LFAFGFDDSSILVHCPC------T---------KKTKAKLKG---HQNRITCLAYSL- 596 (790)
Q Consensus 543 ~~~~~v~~l~~s---~--~g--~l~sgs~dg~I~iwd~~------~---------~~~~~~l~~---h~~~v~~l~~sp- 596 (790)
....+|..|+|. . +. ..+..-....+.|+... . ..++..+.. -..+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 356678888887 2 11 23333445566666611 1 023333432 123677899999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeceeeeeecc---CCC---C-CCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCc
Q 003871 597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT---GLV---P-ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 669 (790)
Q Consensus 597 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~---~~~---~-~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~ 669 (790)
+.+.+|.....|...|||+..+.......+. ... |+- + .......+.|.++...|+++....+.++|+.+..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~-~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR-LSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCccee-eccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence 5668999999999999999332221111121 111 110 0 0134457899999889999888899999998776
Q ss_pred eeeeecCCCCCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCC
Q 003871 670 HTSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 670 ~~~~~~~~~h~~~v~~l~~s~d--g~~l~sgs~dg~i~vwd~~~~ 712 (790)
....+........|..+.-+|+ +..++.. ...|...++.+.
T Consensus 236 ~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 236 QTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred ccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 5432332234677999998887 3333332 256777777763
No 469
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=86.68 E-value=38 Score=38.98 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=69.6
Q ss_pred eEEEEEeCCCCEEEE-EeCCc-----EEEEECCCCceeeeecC-CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003871 640 VNHIQFHPDQIHLLS-IHEGQ-----IDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 640 v~~i~~sp~~~~l~~-~~dg~-----I~iwd~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
-..+.|-|.|..+++ +.||. |..+... |-....+.. .+....+...+|+.....++. ...+.+.+|-..+.
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-GLrHGef~lr~~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkNy 326 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERN-GLRHGEFDLRVGCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKNY 326 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccC-CcccCCccccCCchhhhhhhhhhHHHHHHHH-hhcceEEEEEccce
Confidence 345899999999998 54442 5566542 221111100 011344566677655544443 35678999987765
Q ss_pred eEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccccccCCCCCCCCccCCCCC
Q 003871 713 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTDSREFSTTFGS 786 (790)
Q Consensus 713 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~~~~~~~~~~s~~~~~ 786 (790)
.-.-... .+. ..+. -+.|||...+.|...+. +.|-.-.+......-....|.++|...-..+|
T Consensus 327 hWYLK~e--~~i------p~~s--~vkwhpe~~nTl~f~d~-~~I~~V~f~~k~~~~~s~~p~d~g~~~ViDGs 389 (1243)
T COG5290 327 HWYLKVE--RQI------PGIS--YVKWHPEEKNTLLFRDG-ERILRVFFSEKKTHHGSEYPFDNGTSYVIDGS 389 (1243)
T ss_pred EEEEEEe--ecC------CCcc--eeeeccccCcEEEEecC-CeEEEEEeehhhhcCCcccCccCCceEEEcCc
Confidence 4221111 111 1233 68999965555555433 34444334333333344556677766544433
No 470
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.31 E-value=22 Score=41.06 Aligned_cols=143 Identities=14% Similarity=0.152 Sum_probs=85.5
Q ss_pred CcEEEEecCCeEEEEECCCCcEE------EEEc----------------CCCCCeEEEEEcCCC---eEEEEeCCCcEEE
Q 003871 516 GSHLFSASGGKISIFSLETFQTL------ATFA----------------NPPPIATYFILLPQD---LFAFGFDDSSILV 570 (790)
Q Consensus 516 ~~~l~s~sdg~I~vwd~~~~~~~------~~~~----------------~~~~~v~~l~~s~~g---~l~sgs~dg~I~i 570 (790)
.++++.+..+.|.||+.+.-... ..+. .....|+.+....=| .|+.+.+||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 56788888999999998642211 1110 012235555544333 8899999999999
Q ss_pred EeCCC-------C----c---------eEEEEcCCCCCEEEEEEe--CCCCEEEEEeCCCcEEEEECCCCceeeceeeee
Q 003871 571 HCPCT-------K----K---------TKAKLKGHQNRITCLAYS--LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628 (790)
Q Consensus 571 wd~~~-------~----~---------~~~~l~~h~~~v~~l~~s--pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~ 628 (790)
|.+++ . . +...+. -...+++++++ ...++||+++....|.||-........ .....
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~-~~~~s 206 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERF-YHVPS 206 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccc-ccccc
Confidence 97531 0 0 111122 23468899998 777888888888888887654421100 00111
Q ss_pred eccCCCCCCCCeEEEEEeCCC-----C-EEEE-EeCCcEEEEEC
Q 003871 629 FQTGLVPETTIVNHIQFHPDQ-----I-HLLS-IHEGQIDVYEA 665 (790)
Q Consensus 629 ~~~~~~~~~~~v~~i~~sp~~-----~-~l~~-~~dg~I~iwd~ 665 (790)
.... ..|.+|+|-++. . .+++ +-.|.+.+|++
T Consensus 207 ~~~~-----hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHS-----HNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccc-----cCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1222 468899997753 2 4444 47888888777
No 471
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.89 E-value=4.1 Score=40.20 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=48.9
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEe-ccccccCC----C-CcccccceEEEEEecCCCCEEEEEeCCCcEEEEe
Q 003871 688 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQI-NLTAYAQP----G-TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 761 (790)
Q Consensus 688 ~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~-~~~~~~~~----g-h~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~ 761 (790)
+..++++|++-+.+|.+++||+.+++.+..- .....+.. + .....|. .+..+. +|.-+++-+ +|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~--~~~lt~-~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNIT--SCSLTS-NGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEE--EEEEcC-CCCEEEEEe-CCCEEEec
Confidence 4467899999999999999999998765432 11111110 0 1123344 777777 787777665 57889998
Q ss_pred cCCC
Q 003871 762 PLES 765 (790)
Q Consensus 762 ~~~~ 765 (790)
..-+
T Consensus 94 ~~L~ 97 (219)
T PF07569_consen 94 PDLG 97 (219)
T ss_pred cccc
Confidence 7654
No 472
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=85.13 E-value=79 Score=36.39 Aligned_cols=163 Identities=10% Similarity=0.161 Sum_probs=86.3
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeC------CCCEEEE-Ee-C
Q 003871 586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP------DQIHLLS-IH-E 657 (790)
Q Consensus 586 ~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp------~~~~l~~-~~-d 657 (790)
...|-++.+.++++.+++...+|.|.+||...+....... +...+. ..+.-=.|-+ ...++++ +. +
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~---l~~~~~---~~v~ys~fv~~~~~~~~~~~ll~v~~~~ 202 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQ---LKLKSS---INVSYSKFVNDFELENGKDLLLTVSQLS 202 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccc---cccccc---cceehhhhhcccccccCCceEEEEEEcC
Confidence 5678899999999999999999999999994322211111 111221 1111112222 2234444 43 2
Q ss_pred C---cEEEEECC-CCceeeeecC-CCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCccc
Q 003871 658 G---QIDVYEAP-TLNHTSQLVP-DKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 731 (790)
Q Consensus 658 g---~I~iwd~~-~~~~~~~~~~-~~h~~~v~~l~~s~-dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~ 731 (790)
+ ..+++.+. +...+..+.. ..+........|.- +|+...- .++.|.+|++..-+..+.+.......... ..
T Consensus 203 ~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~-~~ 279 (670)
T PF10395_consen 203 NSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKES-DD 279 (670)
T ss_pred CCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhcccc-cc
Confidence 2 36777771 1222222210 01123333444443 4554333 67899999999998888876543332111 11
Q ss_pred ccceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 732 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 732 ~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
.+++.|...+.+.-+ .++.|++.|+.
T Consensus 280 -----~vSl~~~s~nRvLLs-~~nkIyLld~~ 305 (670)
T PF10395_consen 280 -----LVSLKPPSPNRVLLS-VNNKIYLLDLK 305 (670)
T ss_pred -----ceEeecCCCCeEEEE-cCCEEEEEeeh
Confidence 223332233444433 46789999975
No 473
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=84.75 E-value=4.2 Score=28.04 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=26.0
Q ss_pred CCeEEEEEecCC---CEEEEEEcCCeEEEEECCCC
Q 003871 681 LPITYATYSCDG---KCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 681 ~~v~~l~~s~dg---~~l~sgs~dg~i~vwd~~~~ 712 (790)
+.+.++.|||+. .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 368899999854 47888777899999999953
No 474
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=84.69 E-value=11 Score=40.93 Aligned_cols=81 Identities=12% Similarity=0.039 Sum_probs=55.1
Q ss_pred EcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEE-e-CCC----------------C-E
Q 003871 541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY-S-LSL----------------N-V 600 (790)
Q Consensus 541 ~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~-s-pdg----------------~-~ 600 (790)
+......+.+++.+|++ +.|+...-|.|.++|+.++..++.++|..+.=..-.. . +.. . +
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 33444567899999999 8888777789999999999999888886543221111 1 111 1 2
Q ss_pred EEEEeCCCcEEEEECCCCcee
Q 003871 601 LVSSGADAQLCVWDAVGWKKL 621 (790)
Q Consensus 601 l~s~s~dg~I~vwd~~~~~~~ 621 (790)
++-+-.-|.|.||+++.|..+
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EEEeccCCeEEEEecCCCCEE
Confidence 334566788999999886543
No 475
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.58 E-value=41 Score=32.65 Aligned_cols=151 Identities=13% Similarity=0.151 Sum_probs=80.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE----eCC---cEEEE---ECC--
Q 003871 599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEG---QIDVY---EAP-- 666 (790)
Q Consensus 599 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~----~dg---~I~iw---d~~-- 666 (790)
..|..+...+.|.+|++.+... ..+.+++.- +.|..+.++..|.++++- ... .+++| ...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~---~~~~~F~Tv-----~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEEC---PLLCTFSTV-----GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCC---ceeEEEcch-----hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 3444445667899999984332 233334333 589999999999999982 222 45554 222
Q ss_pred CCceee-eecCC-------------------CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEeccccccC
Q 003871 667 TLNHTS-QLVPD-------------------KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL-RCQINLTAYAQ 725 (790)
Q Consensus 667 ~~~~~~-~~~~~-------------------~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~-~~~~~~~~~~~ 725 (790)
...++. .+.++ .-..++.+++..|-..-|+.|+ ++.+.+|.+..+.. ...+....|..
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~ 179 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFER 179 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechh
Confidence 112222 11110 0134567777777433344443 67888998765443 11111111110
Q ss_pred --CCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 726 --PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 726 --~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
--| ...+.+..+++.. .|+|..+. -.+++..+.
T Consensus 180 ~l~~~-~~~~~p~~v~ic~---~yiA~~s~-~ev~Vlkl~ 214 (215)
T PF14761_consen 180 SLIDH-IDNFKPTQVAICE---GYIAVMSD-LEVLVLKLE 214 (215)
T ss_pred hhhhe-ecCceEEEEEEEe---eEEEEecC-CEEEEEEEe
Confidence 012 1233455677754 68887764 567777653
No 476
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=82.70 E-value=2.7 Score=32.29 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=34.3
Q ss_pred HHhcCCHHHHHHHhcccc-cccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccc
Q 003871 52 IVMNGEWEKAEKYLSAFT-KLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVF 112 (790)
Q Consensus 52 ~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~ 112 (790)
++.+|+|++|+.++.++- ..|++.. +++.+ -.=+++.|++++|..+|. ++...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~---~~~~l----a~~~~~~g~~~~A~~~l~-~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPE---ARLLL----AQCYLKQGQYDEAEELLE-RLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHH---HHHHH----HHHHHHTT-HHHHHHHHH-CCHGG
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHH---HHHHH----HHHHHHcCCHHHHHHHHH-HHHHH
Confidence 467899999999998872 3333322 33332 223457799999999999 44444
No 477
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.08 E-value=29 Score=38.21 Aligned_cols=110 Identities=13% Similarity=0.004 Sum_probs=62.4
Q ss_pred CeEEEEEeCCCCEEEEEe-CCcEEEEECCCCce--eeeec---CCCCCCCeEEEEEecCC------CEEEEEE-------
Q 003871 639 IVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNH--TSQLV---PDKMDLPITYATYSCDG------KCIYVSC------- 699 (790)
Q Consensus 639 ~v~~i~~sp~~~~l~~~~-dg~I~iwd~~~~~~--~~~~~---~~~h~~~v~~l~~s~dg------~~l~sgs------- 699 (790)
..+.|+|.|||++|++-. .|.|++++..++.. +..+. ..........++++|+- ++|+...
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~ 110 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK 110 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence 578999999999888876 69999998755432 21111 11125678999999874 3444432
Q ss_pred ---cCCeEEEEECCCC--eE---EEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCC
Q 003871 700 ---KSGHVKVFDTSTL--EL---RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 755 (790)
Q Consensus 700 ---~dg~i~vwd~~~~--~~---~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg 755 (790)
....|.-|.+... .+ ...+.... ....|.. . .++|.| ||.+.++.++.+
T Consensus 111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP-~~~~H~G---g--rI~FgP-DG~LYVs~GD~g 167 (454)
T TIGR03606 111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLP-AGNDHNG---G--RLVFGP-DGKIYYTIGEQG 167 (454)
T ss_pred CccCCcEEEEEEecCCCCccccceEEEecCC-CCCCcCC---c--eEEECC-CCcEEEEECCCC
Confidence 1234555554321 11 11121100 0012322 2 788999 888777666543
No 478
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=81.84 E-value=12 Score=35.44 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=28.6
Q ss_pred eEEEEEecC-----CCCEEEEEeCCCcEEEEecCCC-cccccc
Q 003871 735 PLVIAAHPL-----EPNRIALGLTNGRVHVIEPLES-EVEWGK 771 (790)
Q Consensus 735 ~~~v~~sp~-----d~~~las~s~Dg~i~iW~~~~~-~~~w~~ 771 (790)
+.+++|||. .+.+||+.+.+|.|.||..... ...|..
T Consensus 88 vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~ 130 (173)
T PF12657_consen 88 VVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNR 130 (173)
T ss_pred EEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEee
Confidence 459999993 1347999999999999998865 555754
No 479
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=81.72 E-value=0.98 Score=29.10 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=26.3
Q ss_pred cchhhhHhhhhhcccchhHHHHhhhhcccc
Q 003871 195 KEELIYLIHQFLNEEEFKETLHKLEQETRV 224 (790)
Q Consensus 195 ~~~~~~~~~q~l~~~~~~~~~~~l~~e~~~ 224 (790)
+.++.++|.|+|...||..++..+++|++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~ 32 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGL 32 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCC
Confidence 346778899999999999999999999875
No 480
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=81.72 E-value=1 Score=27.65 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=21.6
Q ss_pred hhhhHhhhhhcccchhHHHHhhhhcc
Q 003871 197 ELIYLIHQFLNEEEFKETLHKLEQET 222 (790)
Q Consensus 197 ~~~~~~~q~l~~~~~~~~~~~l~~e~ 222 (790)
++.++|.++|...||.+++..+.+|+
T Consensus 2 ~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 2 ELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 46678999999999999999987775
No 481
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=81.61 E-value=1.6 Score=49.98 Aligned_cols=197 Identities=9% Similarity=0.080 Sum_probs=103.2
Q ss_pred CCCCCeEEEEec-C--cEEEEec-CCeEEEEECCC--CcEEEE-----EcCCCCCeEEEEEc---CCC-eEEEEeCCCcE
Q 003871 504 DPKDSISCFALR-G--SHLFSAS-GGKISIFSLET--FQTLAT-----FANPPPIATYFILL---PQD-LFAFGFDDSSI 568 (790)
Q Consensus 504 ~~~~~V~~l~~s-~--~~l~s~s-dg~I~vwd~~~--~~~~~~-----~~~~~~~v~~l~~s---~~g-~l~sgs~dg~I 568 (790)
+..+.|-.+.|. . ..+. . -|.+.||+++- |+.... .......+.-+.|. ++. ++..+-.++.|
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 455666666655 1 1111 2 26777888752 432222 22223333444454 444 77777888888
Q ss_pred EEEeCCCCceEEEEcCCCCCEEEEE-----------EeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCC
Q 003871 569 LVHCPCTKKTKAKLKGHQNRITCLA-----------YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 637 (790)
Q Consensus 569 ~iwd~~~~~~~~~l~~h~~~v~~l~-----------~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~ 637 (790)
++.+..+... ..+.+|...+..++ .||||..+|.++.||.++.|.+.-......+.+... ..|+.
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhew-kphd~-- 283 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEW-KPHDK-- 283 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhcc-CCCCC--
Confidence 8877654322 34556776655543 589999999999999999998753222212223211 22221
Q ss_pred CCeEEEEEeCC-------CC--EEEEE--eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCC--------E----
Q 003871 638 TIVNHIQFHPD-------QI--HLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK--------C---- 694 (790)
Q Consensus 638 ~~v~~i~~sp~-------~~--~l~~~--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~--------~---- 694 (790)
.+-.|.-|+.+ +. +++++ .+..+++|.....+|+-.+. -..|..+. -++|+ |
T Consensus 284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~----~d~v~iV~-p~~~~v~~~~~~~~~~~~ 358 (1283)
T KOG1916|consen 284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL----IDGVQIVG-PHDGEVTDLSMCQWMTTR 358 (1283)
T ss_pred CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc----ccceEeec-CCCccccchhhhHHHHHH
Confidence 22223224332 22 23333 34568999877766652221 12233333 22332 1
Q ss_pred EEEEEcCCeEEEEECCC
Q 003871 695 IYVSCKSGHVKVFDTST 711 (790)
Q Consensus 695 l~sgs~dg~i~vwd~~~ 711 (790)
+++.+-++.|.+|.-..
T Consensus 359 ~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 359 LVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred HHHhhhHHHHHHhhcch
Confidence 23455678888886443
No 482
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=81.43 E-value=70 Score=33.06 Aligned_cols=107 Identities=11% Similarity=-0.069 Sum_probs=64.3
Q ss_pred EEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCC
Q 003871 570 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 649 (790)
Q Consensus 570 iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~ 649 (790)
++|+.+++.+.. |.. -..+..|+ +|++.++-+..|.+..+|.++|+......+. +....++|. |
T Consensus 189 vidv~s~evl~~--GLs-mPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vp----------G~~rGL~f~--G 252 (335)
T TIGR03032 189 VIDIPSGEVVAS--GLS-MPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLP----------GFTRGLAFA--G 252 (335)
T ss_pred EEEeCCCCEEEc--Ccc-CCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECC----------CCCccccee--C
Confidence 456666654421 111 11233454 6788888888999999999877643222222 456778887 7
Q ss_pred CEEEEEe-----CC----------------cEEEEECCCCceeeeecCCCCCCCeEEEEEecCC
Q 003871 650 IHLLSIH-----EG----------------QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 692 (790)
Q Consensus 650 ~~l~~~~-----dg----------------~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg 692 (790)
.++++|. ++ .|.+.|+++|..+..+.....-..+.++++-|+-
T Consensus 253 ~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~ 316 (335)
T TIGR03032 253 DFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGV 316 (335)
T ss_pred CEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecCC
Confidence 7777641 11 2667777777777766554444556666666653
No 483
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=80.78 E-value=69 Score=32.57 Aligned_cols=270 Identities=11% Similarity=0.024 Sum_probs=138.0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
..+.++ +++. ..+..+.-++|.|+.....+...-.+.. .+--.+ |.-.|++...+.-|.-
T Consensus 90 ~Dv~vs---------e~yv----yvad~ssGL~IvDIS~P~sP~~~~~lnt-----~gyayg--v~vsGn~aYVadlddg 149 (370)
T COG5276 90 ADVRVS---------EEYV----YVADWSSGLRIVDISTPDSPTLIGFLNT-----DGYAYG--VYVSGNYAYVADLDDG 149 (370)
T ss_pred heeEec---------ccEE----EEEcCCCceEEEeccCCCCcceeccccC-----CceEEE--EEecCCEEEEeeccCc
Confidence 556676 6666 7777888899999986322222222221 122233 3445888888886666
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEECCCCc---EEEE
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQ---TLAT 540 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd~~~~~---~~~~ 540 (790)
+.+.|+.+... ..+..... .....-..++.+|++-..+. |+-+.+.|+.+.. .+..
T Consensus 150 fLivdvsdpss------------------P~lagrya--~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~ 209 (370)
T COG5276 150 FLIVDVSDPSS------------------PQLAGRYA--LPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGS 209 (370)
T ss_pred EEEEECCCCCC------------------ceeeeeec--cCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEE
Confidence 77788775433 22211111 22333467788877777766 9999999987642 3333
Q ss_pred EcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcC--CCC--CEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 003871 541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQN--RITCLAYSLSLNVLVSSGADAQLCVWDA 615 (790)
Q Consensus 541 ~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~--h~~--~v~~l~~spdg~~l~s~s~dg~I~vwd~ 615 (790)
+. ....+.++..+++- +++.. +--+.+-|..+.+....+-. ... .++.+.. .+++...+..+.-+-+-|+
T Consensus 210 ~n-~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idi 284 (370)
T COG5276 210 YN-TGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDI 284 (370)
T ss_pred Ee-cCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEec
Confidence 32 23367777777765 55443 33466777765543333321 112 2222333 3556666666666667777
Q ss_pred CCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEE
Q 003871 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI 695 (790)
Q Consensus 616 ~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 695 (790)
.+... ......+.... .....+..+ +.++.........+.|....+......+ ...-+.+.+.+-+.+.+
T Consensus 285 snp~s--pfl~ss~~t~g----~~a~gi~ay--~~y~yiadkn~g~vV~~s~~s~m~~~~g--~~ti~~s~~v~~~~q~~ 354 (370)
T COG5276 285 SNPPS--PFLSSSLDTAG----YQAAGIRAY--GNYNYIADKNTGAVVDASPPSMMDKRPG--RPTIGQSCDVSVDTQII 354 (370)
T ss_pred cCCCC--CchhccccCCC----ccccceEEe--cCeeEeccCCceEEEeCCChhhcccccC--cceEeeecceEEEeeEE
Confidence 65210 00000000000 012222222 2233333222333444332222111111 11223344455556688
Q ss_pred EEEEcCCeEEEEEC
Q 003871 696 YVSCKSGHVKVFDT 709 (790)
Q Consensus 696 ~sgs~dg~i~vwd~ 709 (790)
.+...++-+.+|+.
T Consensus 355 y~~d~~~gl~i~~~ 368 (370)
T COG5276 355 YSTDYNGGLSIIEY 368 (370)
T ss_pred EEeecCCCEEEEEe
Confidence 88888888888875
No 484
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=80.75 E-value=94 Score=37.87 Aligned_cols=152 Identities=15% Similarity=0.080 Sum_probs=82.2
Q ss_pred CEEEEEeC---------CCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecC
Q 003871 454 DFLVALTQ---------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASG 524 (790)
Q Consensus 454 ~~l~s~~~---------dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sd 524 (790)
.||++|.. -|.+.++|+-.--...| .+.+...++....+...++|..++=...+|+++.+
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepg-----------kP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~G 1115 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPG-----------KPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQG 1115 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCC-----------CCcccceeeeeehhhcccceEEEEEeccEEEEccC
Confidence 47777754 37788888643111001 12222333333444577888888777778888888
Q ss_pred CeEEEEECCCC-cEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-eEEEEc-C-CCCCEEEEEEeCCCC
Q 003871 525 GKISIFSLETF-QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKAKLK-G-HQNRITCLAYSLSLN 599 (790)
Q Consensus 525 g~I~vwd~~~~-~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~-~~~~l~-~-h~~~v~~l~~spdg~ 599 (790)
.+|.+|+++.. ..+.. .--.-++......--. +++.|.--..|.+...+... .+..+. + ..-.+.++.|--||.
T Consensus 1116 qKI~v~~l~r~~~ligV-aFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~ 1194 (1366)
T KOG1896|consen 1116 QKIIVRKLDRDSELIGV-AFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGS 1194 (1366)
T ss_pred cEEEEEEeccCCcceee-EEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCC
Confidence 99999999543 22211 0011111111111112 55555555556655544321 121221 1 223577788877765
Q ss_pred --EEEEEeCCCcEEEEECCC
Q 003871 600 --VLVSSGADAQLCVWDAVG 617 (790)
Q Consensus 600 --~l~s~s~dg~I~vwd~~~ 617 (790)
.++++..|+.|++|-...
T Consensus 1195 ~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1195 NLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred eeEEEEEcCCCcEEEEEeCC
Confidence 467888899998876543
No 485
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=80.54 E-value=6.3 Score=26.72 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=24.3
Q ss_pred CCCCEEEEE--eCCcEEEEECCCCceeeeecC
Q 003871 647 PDQIHLLSI--HEGQIDVYEAPTLNHTSQLVP 676 (790)
Q Consensus 647 p~~~~l~~~--~dg~I~iwd~~~~~~~~~~~~ 676 (790)
|++++|+++ .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 577777774 678999999999988888765
No 486
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.16 E-value=42 Score=38.62 Aligned_cols=133 Identities=8% Similarity=0.035 Sum_probs=71.3
Q ss_pred EEEEcCCC-eEEEEeCC----CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCc
Q 003871 550 YFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWK 619 (790)
Q Consensus 550 ~l~~s~~g-~l~sgs~d----g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg-----~I~vwd~~~~~ 619 (790)
-+.|-.|. +.+++... ..+++|... |..-..-...++.-..+.|-|.|..+++-+.|| .|.++.-++-+
T Consensus 206 ~i~wrgD~~y~~v~r~Ee~prra~rvysre-g~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr 284 (1243)
T COG5290 206 IIFWRGDTEYNLVGRSEERPRRAFRVYSRE-GQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLR 284 (1243)
T ss_pred EEEEccCcceeeecchhcccccceeeeccc-cccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcc
Confidence 35565555 55555432 246666532 322211122223334588999999999877554 36666554311
Q ss_pred eeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC
Q 003871 620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 692 (790)
Q Consensus 620 ~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg 692 (790)
.....+. . +.+ ..+..++|+-....++++..+.+.+|-..+-.-..... ..-..+.-+.|+|..
T Consensus 285 -HGef~lr-~--~~d---Ek~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e--~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 285 -HGEFDLR-V--GCD---EKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVE--RQIPGISYVKWHPEE 348 (1243)
T ss_pred -cCCcccc-C--Cch---hhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEe--ecCCCcceeeecccc
Confidence 1111122 1 111 35677888877777777778889999876543221111 113345667777743
No 487
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.12 E-value=0.28 Score=52.21 Aligned_cols=144 Identities=15% Similarity=0.138 Sum_probs=91.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEE
Q 003871 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 519 (790)
Q Consensus 442 ~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l 519 (790)
.......|-|.+.-++.++.+..+..||-..... . ....+.....++|. +..+
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~----------------------l---e~n~tg~aldm~wDkegdvl 89 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI----------------------L---ELNPTGKALDMAWDKEGDVL 89 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhhccee----------------------c---ccCCchhHhhhhhccccchh
Confidence 3334456778777788888888888777443211 0 01234445566676 4444
Q ss_pred EE-ec-CCeEEEEECCCCcEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEe
Q 003871 520 FS-AS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 595 (790)
Q Consensus 520 ~s-~s-dg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~s 595 (790)
+. +. .+.+.+||+.+... .++. +....-.-+.|++.+ .++.|...|.+.+++..+.+.+-..-.|..+++++++.
T Consensus 90 avlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 90 AVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 43 33 68999999975321 1221 111122237789888 88999999999999987766554444488999999999
Q ss_pred CCCCEEEEEeCCCcEEE
Q 003871 596 LSLNVLVSSGADAQLCV 612 (790)
Q Consensus 596 pdg~~l~s~s~dg~I~v 612 (790)
+.+ +.+.++.|..+.+
T Consensus 169 lEd-~vil~dcd~~L~v 184 (615)
T KOG2247|consen 169 LED-YVILCDCDNTLSV 184 (615)
T ss_pred ccc-eeeecCcHHHHHH
Confidence 976 4555666655443
No 488
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=78.67 E-value=77 Score=31.91 Aligned_cols=182 Identities=13% Similarity=0.041 Sum_probs=111.7
Q ss_pred EEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEc--
Q 003871 510 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-- 583 (790)
Q Consensus 510 ~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~-- 583 (790)
..++-. |..-+++. .+.|--.|..+|+....--+....-..+...||| .-++-+.. .|.-.|.++.+.. .|.
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt-~f~lp 142 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT-RFPLP 142 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE-Eeecc
Confidence 334444 33444444 4566667777777655444445555677888888 44432222 5666676655432 221
Q ss_pred --CCCCCEEEEEEeCCCCEEEEEeCC---------CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEE
Q 003871 584 --GHQNRITCLAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 652 (790)
Q Consensus 584 --~h~~~v~~l~~spdg~~l~s~s~d---------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l 652 (790)
.-........|.+.|++-.++... +.|++|+.. .+ .....|+..|+|..-
T Consensus 143 ~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP--------------qG-----~gpyGi~atpdGsvw 203 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP--------------QG-----GGPYGICATPDGSVW 203 (353)
T ss_pred cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC--------------CC-----CCCcceEECCCCcEE
Confidence 123457788899999988877632 223333322 12 356778899999888
Q ss_pred EEE-eCCcEEEEECCCCceeeeecCCCC-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003871 653 LSI-HEGQIDVYEAPTLNHTSQLVPDKM-DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 653 ~~~-~dg~I~iwd~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~ 713 (790)
+++ .++.|-..|..++.. ..+..... ...-..+.-+|.|+.-++....+.+.-+|-....
T Consensus 204 yaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 204 YASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EEeccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 886 677788888877633 23322211 3445666667888888887778888888877654
No 489
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=78.59 E-value=48 Score=29.50 Aligned_cols=117 Identities=6% Similarity=-0.033 Sum_probs=68.6
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcee---eceeeeeeccCCCCCCCCeEEEEEeC-----CCCEEEEEeCCcEEEEE
Q 003871 593 AYSLSLNVLVSSGADAQLCVWDAVGWKKL---CSKFLHSFQTGLVPETTIVNHIQFHP-----DQIHLLSIHEGQIDVYE 664 (790)
Q Consensus 593 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~---~~~~l~~~~~~~~~~~~~v~~i~~sp-----~~~~l~~~~dg~I~iwd 664 (790)
.|.....-|+.++.-+.|.|++....... ....+..+.-. ..|++++-.| +...|+.|....+..||
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-----~~italaaG~l~~~~~~D~LliGt~t~llaYD 79 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-----QEITALAAGRLKPDDGRDCLLIGTQTSLLAYD 79 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-----CceEEEEEEecCCCCCcCEEEEeccceEEEEE
Confidence 45445556788888888988887643211 11222222222 3577775544 34677789899999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEec---CCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003871 665 APTLNHTSQLVPDKMDLPITYATYSC---DGKCIYVSCKSGHVKVFDTSTLELRCQ 717 (790)
Q Consensus 665 ~~~~~~~~~~~~~~h~~~v~~l~~s~---dg~~l~sgs~dg~i~vwd~~~~~~~~~ 717 (790)
+.....+..-. -...|.++.+.. ...-++..+.+..|.-||....+....
T Consensus 80 V~~N~d~Fyke---~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 80 VENNSDLFYKE---VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cccCchhhhhh---CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 98765432211 245677776653 122344444577888888776654433
No 490
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=78.31 E-value=45 Score=36.37 Aligned_cols=142 Identities=13% Similarity=0.119 Sum_probs=85.6
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCC-------EEEEEeCCCcEEEEECCC-Cceeeceeeeee
Q 003871 558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-------VLVSSGADAQLCVWDAVG-WKKLCSKFLHSF 629 (790)
Q Consensus 558 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~-------~l~s~s~dg~I~vwd~~~-~~~~~~~~l~~~ 629 (790)
.+..|.....++-.|+..|+.+..+..|..- -+.|.|+.+ .-+.|-.+..|.-.|.+- |..+........
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY 559 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDY 559 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhc
Confidence 4556667778999999999999999877654 567777532 123455566666666653 211111111100
Q ss_pred ccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 630 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 630 ~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
.. . ....+..-.. +.++|+ +..|-|++||-- |..-++..+ .-+..|..+..+.+|+++++.+. .++.+-|
T Consensus 560 ~t-K----n~Fss~~tTe-sGyIa~as~kGDirLyDRi-g~rAKtalP-~lG~aIk~idvta~Gk~ilaTCk-~yllL~d 630 (776)
T COG5167 560 KT-K----NKFSSGMTTE-SGYIAAASRKGDIRLYDRI-GKRAKTALP-GLGDAIKHIDVTANGKHILATCK-NYLLLTD 630 (776)
T ss_pred cc-c----cccccccccc-CceEEEecCCCceeeehhh-cchhhhcCc-ccccceeeeEeecCCcEEEEeec-ceEEEEe
Confidence 00 0 1233333333 446776 588999999964 333333322 24788999999999999887664 5566666
Q ss_pred CC
Q 003871 709 TS 710 (790)
Q Consensus 709 ~~ 710 (790)
+.
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 54
No 491
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=78.25 E-value=7 Score=41.54 Aligned_cols=175 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred CCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeE-EEEEeCCCCEEE
Q 003871 575 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN-HIQFHPDQIHLL 653 (790)
Q Consensus 575 ~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~-~i~~sp~~~~l~ 653 (790)
.++.+..+..-...|..+-..|||+.+..-+. .++.++++.+......+.+..-+.... ..|+ ++..-..|..+.
T Consensus 209 q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~---~~Vte~l~lL~Gg~SLL 284 (733)
T COG4590 209 QQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSR---HQVTEQLYLLSGGFSLL 284 (733)
T ss_pred hhhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchH---HHHHHHHHHHhCceeEE
Q ss_pred EE-eCCcEEEE------ECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCC
Q 003871 654 SI-HEGQIDVY------EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 726 (790)
Q Consensus 654 ~~-~dg~I~iw------d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~ 726 (790)
+. .||.|.-| +-..-..++.+... ..++..+.-..+.+-+++-+.+|++.++.....+.+-.-..
T Consensus 285 v~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~--pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~------ 356 (733)
T COG4590 285 VVHEDGLVSQWFDVRRDGQPHLNHIRNFKLA--PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA------ 356 (733)
T ss_pred EEcCCCceeeeeeeecCCCCcceeeeccccC--cccceeeccccccceEEEEcCCCceeeeecccCcceehhhh------
Q ss_pred CCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccc
Q 003871 727 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 727 gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
-.... -+++|| .+.+|++- +.|.++++.++++.+.
T Consensus 357 ---~~~~~--~~~~Sp-~~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 357 ---YQAPQ--LVAMSP-NQAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred ---hcCcc--eeeeCc-ccchheee-cCCceEEEEecCCCCC
No 492
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=76.15 E-value=39 Score=33.75 Aligned_cols=143 Identities=11% Similarity=0.089 Sum_probs=77.2
Q ss_pred EEEeCCCCceEEEEcC-CCCCEEEEEEeCCCCEEEEEeC-C--CcEEEEECCCC--ceeeceeeeeeccCCCCCCCCeEE
Q 003871 569 LVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGA-D--AQLCVWDAVGW--KKLCSKFLHSFQTGLVPETTIVNH 642 (790)
Q Consensus 569 ~iwd~~~~~~~~~l~~-h~~~v~~l~~spdg~~l~s~s~-d--g~I~vwd~~~~--~~~~~~~l~~~~~~~~~~~~~v~~ 642 (790)
.+||+.+++.. .+.. ......+-++-|||+++.+|+. + ..+++++..+. ..........+..+ .+-..
T Consensus 49 ~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~-----RWYpT 122 (243)
T PF07250_consen 49 VEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSG-----RWYPT 122 (243)
T ss_pred EEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCC-----Ccccc
Confidence 47888877543 2221 2222333457789999999876 2 35888886540 00000011111111 35556
Q ss_pred EEEeCCCCEEEEE-eC-CcEEEEECCCC--ceeee-ecCC----CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003871 643 IQFHPDQIHLLSI-HE-GQIDVYEAPTL--NHTSQ-LVPD----KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 643 i~~sp~~~~l~~~-~d-g~I~iwd~~~~--~~~~~-~~~~----~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~ 713 (790)
...-|||+.|++| .. .....|.-... ..... +... ....-.-.+...|||+.++.+..++ .|||..+.+
T Consensus 123 ~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~ 200 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNT 200 (243)
T ss_pred ceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCe
Confidence 6777899999985 33 34556654221 11111 1100 0112233556679999999887654 456888887
Q ss_pred EEEEec
Q 003871 714 LRCQIN 719 (790)
Q Consensus 714 ~~~~~~ 719 (790)
.+..+.
T Consensus 201 v~~~lP 206 (243)
T PF07250_consen 201 VVRTLP 206 (243)
T ss_pred EEeeCC
Confidence 766654
No 493
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.52 E-value=2e+02 Score=35.65 Aligned_cols=144 Identities=13% Similarity=0.207 Sum_probs=81.7
Q ss_pred EEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEc--------CCC-eEEEEeCCCcEEEEeCC----CCce-----E
Q 003871 518 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILL--------PQD-LFAFGFDDSSILVHCPC----TKKT-----K 579 (790)
Q Consensus 518 ~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s--------~~g-~l~sgs~dg~I~iwd~~----~~~~-----~ 579 (790)
+.....|+.+.+|+.+++.....+.+....|..+..- |.= ++.+-+.--.|.++-+. ++.. .
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~ 171 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTS 171 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccc
Confidence 4445558899999999977777776666555544321 111 22222223345555432 1111 0
Q ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC----CCC---c-e--ee------cee---eeeeccCCCCCCCCe
Q 003871 580 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA----VGW---K-K--LC------SKF---LHSFQTGLVPETTIV 640 (790)
Q Consensus 580 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~----~~~---~-~--~~------~~~---l~~~~~~~~~~~~~v 640 (790)
.++......|+++....+|+.+.+|- ||. +|.+ ..| + . ++ ... +-.++..+. .+|
T Consensus 172 ~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~---dpI 245 (1311)
T KOG1900|consen 172 FKISVDGVSVNCITYTENGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK---DPI 245 (1311)
T ss_pred eeeecCCceEEEEEeccCCcEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC---Ccc
Confidence 12222345688999888898777655 554 4433 221 0 0 00 000 111332222 689
Q ss_pred EEEEEeCCCCEEEE-EeCCcEEEEECCC
Q 003871 641 NHIQFHPDQIHLLS-IHEGQIDVYEAPT 667 (790)
Q Consensus 641 ~~i~~sp~~~~l~~-~~dg~I~iwd~~~ 667 (790)
..+++...-..+.+ +..|.|.+||+..
T Consensus 246 ~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 246 RQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeEeccccceeeeeccCceEEEEEccC
Confidence 99999987777777 6889999999975
No 494
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.94 E-value=1.5e+02 Score=32.79 Aligned_cols=72 Identities=13% Similarity=0.009 Sum_probs=47.1
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEe-----C----CCCceE---EEE-------c-CCCCCEEEEEEeCCC---CEEE
Q 003871 547 IATYFILLPQD-LFAFGFDDSSILVHC-----P----CTKKTK---AKL-------K-GHQNRITCLAYSLSL---NVLV 602 (790)
Q Consensus 547 ~v~~l~~s~~g-~l~sgs~dg~I~iwd-----~----~~~~~~---~~l-------~-~h~~~v~~l~~spdg---~~l~ 602 (790)
.|..+..++.| .++-.+.+|.+.++= . ++|+.. +++ . ...-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 35677889999 888788888554432 1 233221 111 1 111246678999975 6788
Q ss_pred EEeCCCcEEEEECCCC
Q 003871 603 SSGADAQLCVWDAVGW 618 (790)
Q Consensus 603 s~s~dg~I~vwd~~~~ 618 (790)
.-+.|.+||+||+...
T Consensus 185 iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEecCcEEEEEecCCc
Confidence 8888999999999873
No 495
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=73.57 E-value=1.2e+02 Score=31.43 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=75.4
Q ss_pred cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCC-----CEEEEE--eCCcEEEEECCCCceeeeecCCCC--
Q 003871 609 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-----IHLLSI--HEGQIDVYEAPTLNHTSQLVPDKM-- 679 (790)
Q Consensus 609 ~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~-----~~l~~~--~dg~I~iwd~~~~~~~~~~~~~~h-- 679 (790)
.|.+||+.+++.+....+. ..-.+..+....+++.... .++..+ ..+.|.++|+.+++..+.......
T Consensus 35 KLv~~Dl~t~~li~~~~~p---~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~ 111 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFP---PDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPD 111 (287)
T ss_dssp EEEEEETTTTCEEEEEE-----CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS
T ss_pred EEEEEECCCCcEEEEEECC---hHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCccee
Confidence 6888999987765544443 1111112578888888732 344454 455799999998876555432110
Q ss_pred ---------------CCCeEEEEEec---CCCEEEEEEcCCeEEEEECCC-----CeEEEEe-ccccccCCCCcccccce
Q 003871 680 ---------------DLPITYATYSC---DGKCIYVSCKSGHVKVFDTST-----LELRCQI-NLTAYAQPGTISLELYP 735 (790)
Q Consensus 680 ---------------~~~v~~l~~s~---dg~~l~sgs~dg~i~vwd~~~-----~~~~~~~-~~~~~~~~gh~~~~v~~ 735 (790)
...+..++.+| +|++|+-+...+. ++|.+.+ ....... ....+...|..... .
T Consensus 112 p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~--s 188 (287)
T PF03022_consen 112 PDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQ--S 188 (287)
T ss_dssp -SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---S--E
T ss_pred ccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCC--C
Confidence 11244455544 4455554432221 1222211 0000000 00000000110111 2
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 736 LVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 736 ~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
.+++.++ +|.++.+--..+.|..|+...
T Consensus 189 ~g~~~D~-~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 189 DGMAIDP-NGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp CEEEEET-TTEEEEEECCCTEEEEEETTT
T ss_pred ceEEECC-CCcEEEecCCCCeEEEEeCCC
Confidence 3788888 888888888999999999876
No 496
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=72.17 E-value=5.4 Score=25.39 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=22.6
Q ss_pred CEEEEEeCCCcEEEEecCCCcccccc
Q 003871 746 NRIALGLTNGRVHVIEPLESEVEWGK 771 (790)
Q Consensus 746 ~~las~s~Dg~i~iW~~~~~~~~w~~ 771 (790)
..++.++.+|.+..+|..+|+..|..
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 46778889999999999999999964
No 497
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=71.94 E-value=21 Score=33.70 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=25.6
Q ss_pred CCEEEEEEeCCC------CEEEEEeCCCcEEEEECCC
Q 003871 587 NRITCLAYSLSL------NVLVSSGADAQLCVWDAVG 617 (790)
Q Consensus 587 ~~v~~l~~spdg------~~l~s~s~dg~I~vwd~~~ 617 (790)
..+.+++|||-| -.|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999954 3688899999999998764
No 498
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=71.74 E-value=83 Score=35.89 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=73.1
Q ss_pred CeEEEEEeCCCCEEEEEeCC------cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe---EEEE--
Q 003871 639 IVNHIQFHPDQIHLLSIHEG------QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH---VKVF-- 707 (790)
Q Consensus 639 ~v~~i~~sp~~~~l~~~~dg------~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~---i~vw-- 707 (790)
.+-.++.|||++++|-+.|. ++++-|+.++..+.... .....+++|.+|++.+.-...|.. =++|
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i----~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h 205 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI----TNTSGSFAWAADGKTLFYTRLDENHRPDKVWRH 205 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh----cccccceEEecCCCeEEEEEEcCCCCcceEEEE
Confidence 46678899999999976332 49999999988654332 345778999999987765554422 2333
Q ss_pred ECCC----CeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC---CcEEEEecCCCccccccCCCCCCC
Q 003871 708 DTST----LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN---GRVHVIEPLESEVEWGKLPFTDSR 778 (790)
Q Consensus 708 d~~~----~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D---g~i~iW~~~~~~~~w~~~~~~~~~ 778 (790)
.+.+ .+++..- .+..+.++|.-+. +.++|+....| +.+++.+...++..+....|.++|
T Consensus 206 ~~gt~~~~d~lvyeE-----------~d~~f~~~v~~s~-s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g 271 (682)
T COG1770 206 RLGTPGSSDELVYEE-----------KDDRFFLSVGRSR-SEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENG 271 (682)
T ss_pred ecCCCCCcceEEEEc-----------CCCcEEEEeeecc-CCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCC
Confidence 2332 1222221 2223334554444 45665544433 467777877777666555444444
No 499
>smart00757 CRA CT11-RanBPM. protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)
Probab=71.60 E-value=5.8 Score=33.30 Aligned_cols=79 Identities=25% Similarity=0.193 Sum_probs=48.3
Q ss_pred CChHHHHHHHHhccccccccCh---hHHHHHHHHhcccccchhhhccCCCC--chhHHHHHHHHHHHhhccccccccccc
Q 003871 96 HERTEADSIFRKDLKVFSVSQN---RIDCELAELLALKDLRENEQLSGYTN--ATSSRAKLIDSLKLLVKENRILQDKLI 170 (790)
Q Consensus 96 ~~~~~al~~l~~~l~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~i~~~~~~~~~~~ 170 (790)
+++.+|+.+.|+.++|+...++ +.++++..+|..++.. ..+++.. ....|.++++.+...+-...- .
T Consensus 1 ~~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~---~~sp~~~ll~~~~~~~la~~~n~~~l~~~~-----~ 72 (99)
T smart00757 1 GKIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPT---EPSPYKELLSPSQREKLAEELNSAILELLH-----G 72 (99)
T ss_pred CcHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCC---CCccHHHHCCHHHHHHHHHHHHHHHHHHcc-----C
Confidence 3578999999999999965553 3455555566665431 1222222 345799999998776554210 1
Q ss_pred CCCCc-chHHHHHHHH
Q 003871 171 FPCVN-NSALSSLIKL 185 (790)
Q Consensus 171 ~~~~p-~~rL~~L~~~ 185 (790)
+| ...|+.++++
T Consensus 73 ---~~~~s~L~~~~~~ 85 (99)
T smart00757 73 ---KSSESPLEILLSA 85 (99)
T ss_pred ---CCCCChHHHHHHH
Confidence 22 4567777764
No 500
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=71.20 E-value=11 Score=25.12 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=0.0
Q ss_pred CCCceEEEEEcCCCCEEEEEeC-C--CcEEEE
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQ-T--ATHKLW 468 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~-d--g~i~vw 468 (790)
....-...+|||||++|+.++. + |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Done!