Query 003871
Match_columns 790
No_of_seqs 776 out of 4775
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 06:46:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 1.3E-48 4.4E-53 453.0 40.2 427 278-762 71-609 (611)
2 1nr0_A Actin interacting prote 100.0 3.2E-47 1.1E-51 441.3 40.1 391 307-767 39-570 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 7.2E-46 2.5E-50 427.5 42.5 364 307-761 202-577 (577)
4 2ymu_A WD-40 repeat protein; u 100.0 2.4E-45 8.1E-50 423.2 43.5 403 278-766 28-540 (577)
5 1vyh_C Platelet-activating fac 100.0 1.2E-44 4.2E-49 398.3 36.6 286 368-762 102-409 (410)
6 3sfz_A APAF-1, apoptotic pepti 100.0 3.8E-43 1.3E-47 441.6 35.2 412 279-770 628-1164(1249)
7 2oaj_A Protein SNI1; WD40 repe 100.0 7.5E-42 2.6E-46 410.9 34.1 416 278-766 29-666 (902)
8 3ow8_A WD repeat-containing pr 100.0 6.8E-40 2.3E-44 347.8 42.6 283 438-763 29-320 (321)
9 1got_B GT-beta; complex (GTP-b 100.0 2.9E-40 1E-44 353.9 39.8 291 368-761 49-340 (340)
10 1pgu_A Actin interacting prote 100.0 1.6E-40 5.4E-45 385.6 39.4 389 278-764 78-614 (615)
11 3sfz_A APAF-1, apoptotic pepti 100.0 4.6E-42 1.6E-46 431.7 27.7 429 279-763 670-1248(1249)
12 4g56_B MGC81050 protein; prote 100.0 8.1E-40 2.8E-44 352.7 35.8 309 408-766 20-345 (357)
13 3ow8_A WD repeat-containing pr 100.0 3.7E-39 1.3E-43 342.1 37.3 289 368-710 26-320 (321)
14 3iz6_a 40S ribosomal protein R 100.0 4.4E-40 1.5E-44 358.3 30.3 313 350-713 50-377 (380)
15 2ynn_A Coatomer subunit beta'; 100.0 3.1E-38 1E-42 332.6 41.3 282 439-764 11-302 (304)
16 4gqb_B Methylosome protein 50; 100.0 1.6E-38 5.3E-43 340.2 39.1 294 439-765 28-332 (344)
17 2pbi_B Guanine nucleotide-bind 100.0 4.7E-38 1.6E-42 338.7 42.4 280 439-761 62-354 (354)
18 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.5E-38 8.6E-43 339.6 39.8 296 439-768 13-339 (345)
19 1r5m_A SIR4-interacting protei 100.0 1.6E-38 5.4E-43 350.4 38.3 338 350-763 29-424 (425)
20 2pbi_B Guanine nucleotide-bind 100.0 1.2E-38 4E-43 343.4 36.0 289 368-708 58-354 (354)
21 3frx_A Guanine nucleotide-bind 100.0 8.1E-38 2.8E-42 331.7 42.0 293 438-765 14-318 (319)
22 1pgu_A Actin interacting prote 100.0 2.4E-38 8.1E-43 367.3 40.5 384 307-766 39-574 (615)
23 3frx_A Guanine nucleotide-bind 100.0 1.3E-38 4.5E-43 337.8 35.0 289 368-712 11-318 (319)
24 2oaj_A Protein SNI1; WD40 repe 100.0 6.5E-39 2.2E-43 385.4 36.4 377 324-767 14-608 (902)
25 1gxr_A ESG1, transducin-like e 100.0 1.1E-37 3.8E-42 332.3 40.4 317 385-763 13-336 (337)
26 3iz6_a 40S ribosomal protein R 100.0 2.1E-38 7.3E-43 345.0 34.7 291 438-766 63-377 (380)
27 4ery_A WD repeat-containing pr 100.0 4.5E-37 1.6E-41 324.8 43.6 284 438-763 20-311 (312)
28 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-37 4E-42 334.4 37.5 304 368-717 9-341 (345)
29 1vyh_C Platelet-activating fac 100.0 3.2E-38 1.1E-42 347.2 32.0 281 320-710 101-410 (410)
30 1erj_A Transcriptional repress 100.0 1.9E-36 6.5E-41 331.2 44.9 303 439-766 62-391 (393)
31 2pm9_A Protein WEB1, protein t 100.0 2.2E-38 7.7E-43 348.8 29.5 334 385-765 16-415 (416)
32 4g56_B MGC81050 protein; prote 100.0 9.9E-38 3.4E-42 336.4 31.6 291 370-713 38-345 (357)
33 1got_B GT-beta; complex (GTP-b 100.0 1.5E-37 5E-42 333.0 32.0 286 318-708 46-340 (340)
34 4aow_A Guanine nucleotide-bind 100.0 1.2E-36 4.1E-41 325.1 38.2 293 368-713 32-339 (340)
35 2xzm_R RACK1; ribosome, transl 100.0 6.5E-37 2.2E-41 328.4 36.3 291 368-713 15-342 (343)
36 3mkq_A Coatomer beta'-subunit; 100.0 7.3E-37 2.5E-41 367.3 40.8 362 319-765 5-424 (814)
37 4gqb_B Methylosome protein 50; 100.0 5E-37 1.7E-41 328.5 35.1 288 372-714 28-334 (344)
38 2hes_X YDR267CP; beta-propelle 100.0 2.5E-36 8.4E-41 322.0 40.0 291 439-765 12-329 (330)
39 2xzm_R RACK1; ribosome, transl 100.0 5.3E-36 1.8E-40 321.3 41.2 294 438-766 18-342 (343)
40 2hes_X YDR267CP; beta-propelle 100.0 1.4E-36 4.9E-41 323.7 35.8 300 368-711 8-328 (330)
41 2ynn_A Coatomer subunit beta'; 100.0 1.3E-36 4.5E-41 320.1 34.6 285 367-711 6-302 (304)
42 3mkq_A Coatomer beta'-subunit; 100.0 9.7E-38 3.3E-42 374.9 29.3 383 279-768 26-464 (814)
43 1r5m_A SIR4-interacting protei 100.0 6.9E-37 2.3E-41 337.3 31.0 350 309-710 27-424 (425)
44 1gxr_A ESG1, transducin-like e 100.0 1.8E-35 6.3E-40 315.1 39.9 312 332-709 12-335 (337)
45 3vl1_A 26S proteasome regulato 100.0 3.3E-36 1.1E-40 332.2 34.6 323 385-764 60-419 (420)
46 4ery_A WD repeat-containing pr 100.0 3E-35 1E-39 310.9 39.3 287 368-710 17-311 (312)
47 4aow_A Guanine nucleotide-bind 100.0 1.6E-34 5.5E-39 308.6 44.6 294 438-766 35-339 (340)
48 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-34 4E-39 322.7 42.4 324 368-765 112-443 (445)
49 2pm9_A Protein WEB1, protein t 100.0 2.2E-36 7.4E-41 332.9 27.2 329 332-712 15-415 (416)
50 1erj_A Transcriptional repress 100.0 6.8E-35 2.3E-39 318.8 37.7 288 372-712 62-390 (393)
51 4a11_B DNA excision repair pro 100.0 2.4E-35 8.3E-40 323.2 33.7 351 343-763 22-404 (408)
52 3gre_A Serine/threonine-protei 100.0 2.9E-35 9.9E-40 326.6 32.0 317 398-761 37-437 (437)
53 3dm0_A Maltose-binding peripla 100.0 9.3E-35 3.2E-39 342.2 37.1 290 368-711 376-693 (694)
54 3dm0_A Maltose-binding peripla 100.0 4.4E-34 1.5E-38 336.5 42.8 294 438-763 379-692 (694)
55 3v7d_B Cell division control p 100.0 2.2E-34 7.4E-39 322.2 36.5 337 319-708 113-460 (464)
56 3zwl_B Eukaryotic translation 100.0 1.9E-33 6.6E-38 303.4 42.0 284 438-767 29-349 (369)
57 3ei3_B DNA damage-binding prot 100.0 1.1E-33 3.7E-38 308.1 38.0 286 438-764 70-382 (383)
58 3v7d_B Cell division control p 100.0 2E-33 6.9E-38 314.3 40.7 316 368-761 115-460 (464)
59 3vl1_A 26S proteasome regulato 100.0 2.9E-34 9.9E-39 316.6 33.0 309 334-711 61-419 (420)
60 2j04_B YDR362CP, TAU91; beta p 100.0 1.6E-35 5.6E-40 333.0 23.1 315 408-764 177-517 (524)
61 1sq9_A Antiviral protein SKI8; 100.0 9.3E-34 3.2E-38 309.9 36.3 297 438-766 13-397 (397)
62 3ei3_B DNA damage-binding prot 100.0 5.9E-34 2E-38 310.2 34.5 306 350-711 57-382 (383)
63 4e54_B DNA damage-binding prot 100.0 2.7E-34 9.3E-39 318.6 31.6 290 439-767 117-433 (435)
64 4h5i_A Guanine nucleotide-exch 100.0 1.6E-33 5.6E-38 304.3 36.8 293 441-765 14-344 (365)
65 3k26_A Polycomb protein EED; W 100.0 1.6E-33 5.5E-38 303.8 36.7 292 438-764 15-366 (366)
66 3zwl_B Eukaryotic translation 100.0 1.2E-33 4.2E-38 304.9 35.6 288 368-716 26-351 (369)
67 4e54_B DNA damage-binding prot 100.0 9.2E-35 3.1E-39 322.4 26.2 298 368-715 113-434 (435)
68 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1E-33 3.5E-38 315.0 34.6 322 316-712 107-443 (445)
69 3i2n_A WD repeat-containing pr 100.0 6.2E-34 2.1E-38 306.1 31.7 286 438-766 15-355 (357)
70 1k8k_C P40, ARP2/3 complex 41 100.0 2.1E-33 7E-38 304.0 36.0 299 439-768 6-365 (372)
71 3odt_A Protein DOA1; ubiquitin 100.0 2.1E-33 7.2E-38 296.0 34.7 288 368-718 12-303 (313)
72 3gre_A Serine/threonine-protei 100.0 5.9E-34 2E-38 316.1 31.0 326 334-708 32-437 (437)
73 4aez_A CDC20, WD repeat-contai 100.0 6.4E-33 2.2E-37 304.1 38.0 278 398-718 101-387 (401)
74 3dwl_C Actin-related protein 2 100.0 3.7E-34 1.3E-38 310.9 26.7 296 372-762 9-377 (377)
75 3odt_A Protein DOA1; ubiquitin 100.0 2.7E-32 9.1E-37 287.5 39.3 277 438-768 15-300 (313)
76 1k8k_C P40, ARP2/3 complex 41 100.0 3E-33 1E-37 302.8 32.8 286 371-713 5-363 (372)
77 4aez_A CDC20, WD repeat-contai 100.0 1.2E-32 3.9E-37 302.1 36.6 283 443-771 95-387 (401)
78 4a11_B DNA excision repair pro 100.0 2.4E-32 8.2E-37 299.3 38.4 326 410-768 19-369 (408)
79 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-34 4.3E-39 325.8 20.1 317 341-712 180-518 (524)
80 2pm7_B Protein transport prote 100.0 2.8E-32 9.7E-37 285.9 35.6 255 438-771 6-291 (297)
81 1sq9_A Antiviral protein SKI8; 100.0 8.1E-33 2.8E-37 302.4 32.1 296 368-713 10-397 (397)
82 3i2n_A WD repeat-containing pr 100.0 3.9E-33 1.3E-37 299.8 28.7 295 368-714 12-356 (357)
83 3k26_A Polycomb protein EED; W 100.0 3.7E-33 1.3E-37 300.9 28.2 292 370-711 14-366 (366)
84 4gga_A P55CDC, cell division c 100.0 1.5E-31 5.2E-36 295.1 41.2 283 443-768 107-399 (420)
85 4gga_A P55CDC, cell division c 100.0 1.7E-31 5.7E-36 294.7 39.2 280 385-717 109-401 (420)
86 4ggc_A P55CDC, cell division c 100.0 4.6E-31 1.6E-35 278.8 40.9 280 444-767 28-318 (318)
87 1yfq_A Cell cycle arrest prote 100.0 7E-32 2.4E-36 288.4 33.3 280 438-761 8-321 (342)
88 3dw8_B Serine/threonine-protei 100.0 8.9E-32 3E-36 299.1 35.4 300 440-762 27-444 (447)
89 4ggc_A P55CDC, cell division c 100.0 9.5E-31 3.3E-35 276.4 37.2 276 385-713 29-317 (318)
90 4h5i_A Guanine nucleotide-exch 100.0 2.9E-32 1E-36 294.5 26.0 291 385-712 18-344 (365)
91 2pm7_B Protein transport prote 100.0 3.1E-31 1.1E-35 278.0 31.6 254 368-710 3-284 (297)
92 1p22_A F-BOX/WD-repeat protein 100.0 6.8E-31 2.3E-35 291.3 36.0 277 439-771 131-421 (435)
93 3bg1_A Protein SEC13 homolog; 100.0 9.6E-32 3.3E-36 284.5 25.5 247 504-770 11-298 (316)
94 3dwl_C Actin-related protein 2 100.0 2.8E-32 9.6E-37 296.1 21.8 320 325-709 9-377 (377)
95 2j04_A TAU60, YPL007P, hypothe 100.0 2.6E-31 9E-36 290.8 27.2 292 385-753 19-350 (588)
96 3f3f_A Nucleoporin SEH1; struc 100.0 4.3E-30 1.5E-34 274.2 36.2 259 438-768 8-341 (351)
97 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-30 4E-35 286.2 30.8 293 385-715 38-346 (402)
98 3dw8_B Serine/threonine-protei 100.0 1.7E-30 5.9E-35 288.7 32.5 307 372-710 26-445 (447)
99 3mmy_A MRNA export factor; mRN 100.0 5.4E-30 1.8E-34 276.2 34.0 282 438-764 36-346 (368)
100 3bg1_A Protein SEC13 homolog; 100.0 7.9E-31 2.7E-35 277.5 25.7 244 438-710 10-292 (316)
101 1p22_A F-BOX/WD-repeat protein 100.0 3.5E-30 1.2E-34 285.6 31.6 276 371-717 130-420 (435)
102 1yfq_A Cell cycle arrest prote 100.0 1.9E-30 6.6E-35 277.2 28.3 287 368-708 5-321 (342)
103 3f3f_A Nucleoporin SEH1; struc 100.0 2E-30 6.9E-35 276.8 28.2 305 368-718 5-344 (351)
104 2aq5_A Coronin-1A; WD40 repeat 100.0 3.7E-30 1.3E-34 282.2 29.5 286 444-767 37-345 (402)
105 2j04_A TAU60, YPL007P, hypothe 100.0 2.6E-30 9E-35 282.9 27.1 267 438-763 12-296 (588)
106 3jrp_A Fusion protein of prote 100.0 2.4E-29 8.1E-34 272.5 34.4 248 439-712 9-288 (379)
107 3jrp_A Fusion protein of prote 100.0 1.7E-29 5.7E-34 273.7 31.9 244 504-765 9-288 (379)
108 3vu4_A KMHSV2; beta-propeller 100.0 1.8E-29 6.3E-34 271.5 28.7 291 350-712 3-337 (355)
109 3mmy_A MRNA export factor; mRN 100.0 4E-29 1.4E-33 269.3 30.2 289 368-710 33-345 (368)
110 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.5E-28 5.2E-33 273.6 35.4 307 441-769 4-396 (450)
111 3bws_A Protein LP49; two-domai 100.0 4.2E-28 1.4E-32 268.4 38.6 303 408-764 93-432 (433)
112 3lrv_A PRE-mRNA-splicing facto 100.0 3.9E-29 1.3E-33 267.8 28.0 277 398-764 46-333 (343)
113 3vu4_A KMHSV2; beta-propeller 100.0 2.5E-28 8.6E-33 262.7 32.0 286 439-766 17-338 (355)
114 1l0q_A Surface layer protein; 100.0 5.6E-27 1.9E-31 255.6 41.0 311 407-767 5-345 (391)
115 2w18_A PALB2, fancn, partner a 100.0 3.6E-28 1.2E-32 250.1 27.3 263 342-709 61-355 (356)
116 2xyi_A Probable histone-bindin 100.0 7.8E-28 2.7E-32 266.1 31.1 243 504-765 126-411 (430)
117 3jro_A Fusion protein of prote 100.0 2.7E-28 9.1E-33 289.0 28.5 249 503-766 6-287 (753)
118 3bws_A Protein LP49; two-domai 100.0 4.8E-27 1.6E-31 259.9 35.4 301 342-711 97-432 (433)
119 2w18_A PALB2, fancn, partner a 100.0 2.8E-27 9.5E-32 243.5 30.2 269 408-762 58-355 (356)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.9E-27 6.6E-32 264.7 31.2 251 439-714 100-396 (450)
121 4gq1_A NUP37; propeller, trans 100.0 8.6E-28 3E-32 262.3 26.1 299 442-762 16-387 (393)
122 3jro_A Fusion protein of prote 100.0 1.6E-27 5.6E-32 282.2 28.5 248 438-711 6-285 (753)
123 2xyi_A Probable histone-bindin 100.0 8E-27 2.7E-31 258.0 31.5 251 439-712 126-411 (430)
124 1l0q_A Surface layer protein; 100.0 1.3E-25 4.3E-30 244.9 38.8 264 455-769 4-280 (391)
125 3lrv_A PRE-mRNA-splicing facto 100.0 5.6E-27 1.9E-31 251.0 25.6 236 516-771 48-299 (343)
126 1nir_A Nitrite reductase; hemo 99.9 5.6E-25 1.9E-29 249.2 36.7 322 398-770 147-520 (543)
127 4gq1_A NUP37; propeller, trans 99.9 2.8E-26 9.5E-31 250.4 24.4 281 398-709 28-387 (393)
128 1k32_A Tricorn protease; prote 99.9 7.1E-26 2.4E-30 278.4 28.2 369 327-766 14-463 (1045)
129 1k32_A Tricorn protease; prote 99.9 1.9E-25 6.5E-30 274.6 30.7 380 307-765 33-503 (1045)
130 1nir_A Nitrite reductase; hemo 99.9 2.6E-24 8.8E-29 243.8 31.0 322 335-719 143-522 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 9.2E-24 3.2E-28 231.9 28.2 292 385-742 66-407 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 1.5E-23 5.2E-28 248.6 30.6 322 385-765 40-460 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.7E-23 5.7E-28 229.8 26.4 277 441-766 62-389 (415)
134 1xfd_A DIP, dipeptidyl aminope 99.9 1.9E-22 6.4E-27 238.5 32.2 310 385-752 20-428 (723)
135 3u4y_A Uncharacterized protein 99.9 7.8E-21 2.7E-25 201.7 37.0 285 448-769 4-309 (331)
136 1ri6_A Putative isomerase YBHE 99.9 3.5E-21 1.2E-25 205.0 34.2 276 408-715 9-314 (343)
137 2z3z_A Dipeptidyl aminopeptida 99.9 4.6E-22 1.6E-26 234.5 29.4 318 385-766 29-437 (706)
138 2ecf_A Dipeptidyl peptidase IV 99.9 4.6E-22 1.6E-26 235.9 28.1 308 332-713 39-461 (741)
139 3vgz_A Uncharacterized protein 99.9 1.1E-20 3.8E-25 202.2 35.5 270 441-755 40-335 (353)
140 1xfd_A DIP, dipeptidyl aminope 99.9 2.2E-21 7.5E-26 229.4 28.4 322 333-718 20-450 (723)
141 3u4y_A Uncharacterized protein 99.9 3.5E-20 1.2E-24 196.7 33.8 276 398-714 7-307 (331)
142 1pby_B Quinohemoprotein amine 99.9 5.3E-21 1.8E-25 203.1 26.8 268 454-771 2-317 (337)
143 1pby_B Quinohemoprotein amine 99.9 2.6E-20 8.8E-25 197.8 29.4 271 407-720 4-319 (337)
144 1ri6_A Putative isomerase YBHE 99.9 4.3E-20 1.5E-24 196.6 30.7 269 454-763 5-307 (343)
145 2z3z_A Dipeptidyl aminopeptida 99.9 9.2E-21 3.2E-25 223.4 25.8 315 307-669 45-437 (706)
146 3vgz_A Uncharacterized protein 99.9 9.8E-20 3.3E-24 194.9 30.4 265 385-702 44-335 (353)
147 3hfq_A Uncharacterized protein 99.9 1.7E-19 5.9E-24 192.8 31.8 276 410-767 12-322 (347)
148 2ojh_A Uncharacterized protein 99.9 7.2E-20 2.4E-24 190.0 26.5 254 408-702 16-293 (297)
149 3scy_A Hypothetical bacterial 99.9 7.5E-19 2.6E-23 189.0 35.4 276 411-717 24-345 (361)
150 2ojh_A Uncharacterized protein 99.9 5.2E-20 1.8E-24 191.1 24.0 251 460-755 19-293 (297)
151 2oit_A Nucleoporin 214KDA; NH2 99.8 1.9E-18 6.4E-23 190.3 35.9 311 441-764 36-405 (434)
152 3hfq_A Uncharacterized protein 99.8 3.2E-19 1.1E-23 190.7 28.4 290 343-716 15-324 (347)
153 1z68_A Fibroblast activation p 99.8 1.1E-19 3.6E-24 214.8 24.1 324 385-767 19-446 (719)
154 1jmx_B Amine dehydrogenase; ox 99.8 7.1E-19 2.4E-23 187.7 28.1 234 516-772 11-333 (349)
155 3o4h_A Acylamino-acid-releasin 99.8 2E-19 6.7E-24 206.9 24.5 266 441-764 21-315 (582)
156 3o4h_A Acylamino-acid-releasin 99.8 1.9E-19 6.5E-24 207.0 22.3 266 385-711 25-315 (582)
157 1z68_A Fibroblast activation p 99.8 1E-19 3.4E-24 215.0 18.1 321 334-719 20-451 (719)
158 3pe7_A Oligogalacturonate lyas 99.8 6.4E-18 2.2E-22 183.5 29.9 316 351-769 15-387 (388)
159 1jmx_B Amine dehydrogenase; ox 99.8 4.4E-18 1.5E-22 181.5 26.0 245 446-720 4-334 (349)
160 3scy_A Hypothetical bacterial 99.8 1.6E-16 5.6E-21 170.7 35.3 248 505-767 48-342 (361)
161 4a5s_A Dipeptidyl peptidase 4 99.8 6.4E-17 2.2E-21 191.2 34.4 322 385-766 20-451 (740)
162 2oit_A Nucleoporin 214KDA; NH2 99.8 2.1E-17 7.2E-22 181.9 27.3 253 385-665 40-331 (434)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.1E-16 7.1E-21 170.2 32.6 275 414-713 14-343 (365)
164 4a5s_A Dipeptidyl peptidase 4 99.8 6.5E-17 2.2E-21 191.2 30.6 320 334-719 21-457 (740)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.1E-16 7.1E-21 170.2 31.4 248 506-765 39-342 (365)
166 3pe7_A Oligogalacturonate lyas 99.7 5.2E-17 1.8E-21 176.3 22.0 314 312-708 15-379 (388)
167 3c5m_A Oligogalacturonate lyas 99.7 1.6E-16 5.6E-21 172.6 23.6 315 351-762 15-380 (396)
168 2oiz_A Aromatic amine dehydrog 99.7 1.3E-15 4.6E-20 163.3 28.6 283 412-746 29-360 (361)
169 1q7f_A NHL, brain tumor CG1071 99.7 2E-14 6.9E-19 148.8 34.9 240 504-766 27-282 (286)
170 3c5m_A Oligogalacturonate lyas 99.7 2.3E-16 8E-21 171.4 20.5 306 313-714 16-387 (396)
171 3fvz_A Peptidyl-glycine alpha- 99.7 9.8E-15 3.3E-19 154.6 30.4 246 505-765 22-323 (329)
172 1qks_A Cytochrome CD1 nitrite 99.7 2.4E-13 8.4E-18 153.3 40.6 321 398-769 165-543 (567)
173 1q7f_A NHL, brain tumor CG1071 99.7 8.6E-14 3E-18 144.0 33.7 243 439-712 27-281 (286)
174 3azo_A Aminopeptidase; POP fam 99.7 3.8E-15 1.3E-19 174.0 25.1 292 369-717 18-375 (662)
175 3azo_A Aminopeptidase; POP fam 99.7 1.2E-14 4E-19 169.8 26.8 284 439-767 21-372 (662)
176 2dg1_A DRP35, lactonase; beta 99.7 3.7E-13 1.3E-17 142.6 36.0 270 385-754 9-300 (333)
177 3no2_A Uncharacterized protein 99.6 7.8E-14 2.7E-18 143.2 28.6 251 516-783 5-271 (276)
178 3fvz_A Peptidyl-glycine alpha- 99.6 1.4E-13 4.7E-18 145.7 29.8 261 441-711 23-322 (329)
179 3dsm_A Uncharacterized protein 99.6 9.5E-14 3.3E-18 146.8 26.9 240 507-771 44-308 (328)
180 1qks_A Cytochrome CD1 nitrite 99.6 6.5E-13 2.2E-17 149.8 34.8 326 341-719 174-546 (567)
181 2z2n_A Virginiamycin B lyase; 99.6 1.8E-11 6.1E-16 126.9 41.0 277 440-766 13-297 (299)
182 2oiz_A Aromatic amine dehydrog 99.6 2E-13 6.9E-18 146.3 25.5 225 524-768 30-340 (361)
183 2gop_A Trilobed protease; beta 99.6 4.3E-13 1.5E-17 142.8 27.1 254 441-763 14-330 (347)
184 2xdw_A Prolyl endopeptidase; a 99.6 9.1E-13 3.1E-17 154.9 31.8 242 504-766 122-416 (710)
185 2bkl_A Prolyl endopeptidase; m 99.6 1.8E-13 6.3E-18 160.4 24.1 240 504-767 118-400 (695)
186 3e5z_A Putative gluconolactona 99.5 2.9E-12 9.8E-17 133.2 29.0 230 505-765 26-287 (296)
187 3dsm_A Uncharacterized protein 99.5 5.8E-12 2E-16 133.1 31.4 267 412-719 15-309 (328)
188 2gop_A Trilobed protease; beta 99.5 1.3E-12 4.4E-17 139.1 26.2 236 413-713 42-332 (347)
189 2z2n_A Virginiamycin B lyase; 99.5 4.4E-11 1.5E-15 123.9 36.6 273 385-713 18-297 (299)
190 2xdw_A Prolyl endopeptidase; a 99.5 2.6E-12 8.8E-17 151.0 30.4 243 439-713 122-416 (710)
191 3e5z_A Putative gluconolactona 99.5 1E-11 3.5E-16 129.0 29.7 236 440-715 26-290 (296)
192 3sjl_D Methylamine dehydrogena 99.5 8E-12 2.7E-16 132.2 28.5 279 398-720 42-372 (386)
193 2dg1_A DRP35, lactonase; beta 99.5 3.1E-12 1E-16 135.4 24.9 239 507-763 6-262 (333)
194 1rwi_B Serine/threonine-protei 99.5 6E-12 2.1E-16 128.6 26.2 236 508-767 25-267 (270)
195 2bkl_A Prolyl endopeptidase; m 99.5 1.1E-12 3.6E-17 153.9 23.0 278 398-714 77-400 (695)
196 2mad_H Methylamine dehydrogena 99.5 9.3E-11 3.2E-15 125.7 35.0 275 398-718 30-357 (373)
197 1rwi_B Serine/threonine-protei 99.5 7.9E-12 2.7E-16 127.8 25.6 236 443-713 25-266 (270)
198 2qc5_A Streptogramin B lactona 99.5 6.9E-10 2.4E-14 114.9 39.4 275 440-763 18-299 (300)
199 3no2_A Uncharacterized protein 99.4 4.4E-12 1.5E-16 130.1 20.6 193 555-772 4-203 (276)
200 3sjl_D Methylamine dehydrogena 99.4 5.1E-11 1.7E-15 126.0 29.1 279 448-771 39-370 (386)
201 2mad_H Methylamine dehydrogena 99.4 5.3E-10 1.8E-14 119.8 36.5 237 511-768 70-354 (373)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.4E-10 4.7E-15 121.3 30.7 234 506-764 17-299 (314)
203 1yr2_A Prolyl oligopeptidase; 99.4 2.1E-11 7E-16 144.0 24.9 279 398-714 116-444 (741)
204 1yr2_A Prolyl oligopeptidase; 99.4 3.4E-11 1.1E-15 142.2 26.0 242 505-767 161-444 (741)
205 2qc5_A Streptogramin B lactona 99.4 1.1E-09 3.7E-14 113.4 34.2 270 385-710 23-299 (300)
206 3c75_H MADH, methylamine dehyd 99.4 5.5E-11 1.9E-15 128.1 24.6 279 398-718 82-409 (426)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 6.3E-10 2.1E-14 116.2 28.8 242 441-711 17-299 (314)
208 3g4e_A Regucalcin; six bladed 99.3 2.4E-09 8.2E-14 111.1 29.7 225 442-700 13-261 (297)
209 3hrp_A Uncharacterized protein 99.3 2.9E-09 9.9E-14 115.7 30.7 246 506-762 130-408 (409)
210 1kb0_A Quinohemoprotein alcoho 99.3 7E-10 2.4E-14 128.5 27.2 293 453-774 77-517 (677)
211 3g4e_A Regucalcin; six bladed 99.3 3.4E-09 1.2E-13 109.9 29.8 222 506-752 12-260 (297)
212 1yiq_A Quinohemoprotein alcoho 99.3 1.5E-09 5.1E-14 126.1 29.5 293 453-773 70-514 (689)
213 1xip_A Nucleoporin NUP159; bet 99.3 7.4E-10 2.5E-14 117.7 24.6 186 507-713 38-257 (388)
214 3c75_H MADH, methylamine dehyd 99.2 1E-09 3.6E-14 118.2 24.9 226 525-770 99-408 (426)
215 3q7m_A Lipoprotein YFGL, BAMB; 99.2 1E-08 3.5E-13 110.2 31.8 302 400-762 53-376 (376)
216 2ghs_A AGR_C_1268P; regucalcin 99.2 1.9E-08 6.4E-13 105.8 31.8 216 509-752 51-290 (326)
217 1kb0_A Quinohemoprotein alcoho 99.2 1.8E-09 6.2E-14 125.1 25.5 280 452-763 127-566 (677)
218 3iuj_A Prolyl endopeptidase; h 99.2 1.9E-09 6.4E-14 126.0 25.7 216 526-767 156-408 (693)
219 3q7m_A Lipoprotein YFGL, BAMB; 99.2 1.5E-08 5.2E-13 108.8 30.9 282 453-773 53-346 (376)
220 3hrp_A Uncharacterized protein 99.2 7.2E-09 2.5E-13 112.5 26.9 239 442-709 131-408 (409)
221 2ghs_A AGR_C_1268P; regucalcin 99.2 3.3E-08 1.1E-12 103.9 31.1 222 444-701 51-292 (326)
222 3dr2_A Exported gluconolactona 99.2 7.9E-09 2.7E-13 107.6 25.8 229 440-708 43-303 (305)
223 3hxj_A Pyrrolo-quinoline quino 99.1 4.6E-09 1.6E-13 110.5 24.0 291 408-766 34-326 (330)
224 1xip_A Nucleoporin NUP159; bet 99.1 4.3E-10 1.5E-14 119.5 15.5 177 547-752 39-232 (388)
225 2qe8_A Uncharacterized protein 99.1 2.8E-09 9.5E-14 113.1 21.9 269 442-760 17-317 (343)
226 1yiq_A Quinohemoprotein alcoho 99.1 8.8E-09 3E-13 119.5 26.7 246 453-720 121-514 (689)
227 3dr2_A Exported gluconolactona 99.1 2E-08 6.7E-13 104.6 26.5 224 505-758 43-301 (305)
228 1mda_H Methylamine dehydrogena 99.1 2.5E-09 8.6E-14 113.3 19.1 265 408-720 36-355 (368)
229 3iuj_A Prolyl endopeptidase; h 99.1 4.1E-09 1.4E-13 123.1 22.5 254 385-715 132-409 (693)
230 2hz6_A Endoplasmic reticulum t 99.1 9.1E-12 3.1E-16 133.7 -2.0 224 516-772 9-248 (369)
231 1fwx_A Nitrous oxide reductase 99.1 7.2E-09 2.5E-13 114.0 20.8 240 510-766 90-433 (595)
232 1mda_H Methylamine dehydrogena 99.1 5.3E-09 1.8E-13 110.8 19.1 225 526-768 47-350 (368)
233 2ece_A 462AA long hypothetical 99.0 1.1E-07 3.9E-12 100.9 28.4 232 450-699 90-399 (462)
234 3hxj_A Pyrrolo-quinoline quino 99.0 1.1E-08 3.7E-13 107.6 20.5 287 341-712 37-325 (330)
235 2ece_A 462AA long hypothetical 99.0 1.1E-07 3.7E-12 101.1 27.4 227 516-752 95-399 (462)
236 2hz6_A Endoplasmic reticulum t 99.0 6.1E-11 2.1E-15 127.2 2.6 184 558-771 11-199 (369)
237 4a2l_A BT_4663, two-component 99.0 2.5E-06 8.6E-11 101.2 39.4 327 385-766 266-616 (795)
238 4a2l_A BT_4663, two-component 99.0 1.6E-06 5.5E-11 103.0 37.6 325 385-766 134-482 (795)
239 1kv9_A Type II quinohemoprotei 98.9 2.4E-07 8.1E-12 107.2 28.3 292 453-774 66-498 (668)
240 1npe_A Nidogen, entactin; glyc 98.9 3.6E-06 1.2E-10 85.4 32.8 215 507-745 36-262 (267)
241 2qe8_A Uncharacterized protein 98.9 1.8E-07 6E-12 99.1 22.5 212 546-766 17-280 (343)
242 2ad6_A Methanol dehydrogenase 98.9 8E-07 2.7E-11 100.6 28.6 291 453-773 62-503 (571)
243 2iwa_A Glutamine cyclotransfer 98.9 5.5E-07 1.9E-11 90.1 24.0 216 535-766 9-239 (266)
244 3nol_A Glutamine cyclotransfer 98.8 4.2E-07 1.4E-11 89.7 20.1 199 536-753 32-244 (262)
245 1kv9_A Type II quinohemoprotei 98.8 1.2E-06 4.1E-11 101.3 27.0 246 453-720 117-497 (668)
246 1npe_A Nidogen, entactin; glyc 98.8 1.1E-05 3.7E-10 81.8 30.5 228 517-768 2-242 (267)
247 2ad6_A Methanol dehydrogenase 98.7 3.2E-06 1.1E-10 95.7 28.1 245 453-720 115-503 (571)
248 3nok_A Glutaminyl cyclase; bet 98.7 7.6E-07 2.6E-11 87.8 19.8 196 536-751 44-253 (268)
249 3v9f_A Two-component system se 98.7 2.3E-05 7.7E-10 92.8 36.6 332 385-766 261-613 (781)
250 2iwa_A Glutamine cyclotransfer 98.7 5.1E-06 1.7E-10 83.0 25.8 201 442-668 21-238 (266)
251 1w6s_A Methanol dehydrogenase 98.7 3.5E-06 1.2E-10 95.2 27.4 251 447-720 111-512 (599)
252 1w6s_A Methanol dehydrogenase 98.7 4.2E-06 1.5E-10 94.6 28.1 291 453-773 62-512 (599)
253 1fwx_A Nitrous oxide reductase 98.7 1.5E-06 5.2E-11 95.7 23.2 221 519-764 18-361 (595)
254 3nok_A Glutaminyl cyclase; bet 98.7 2.6E-06 9E-11 84.0 22.0 184 506-699 54-253 (268)
255 3v9f_A Two-component system se 98.7 6.5E-05 2.2E-09 88.8 38.7 311 408-764 327-656 (781)
256 1flg_A Protein (quinoprotein e 98.7 1.1E-05 3.7E-10 91.4 29.8 244 513-773 114-525 (582)
257 3nol_A Glutamine cyclotransfer 98.7 3.3E-06 1.1E-10 83.3 21.9 184 508-700 44-244 (262)
258 3mbr_X Glutamine cyclotransfer 98.6 1.2E-05 4.1E-10 78.7 24.8 197 536-751 10-222 (243)
259 2fp8_A Strictosidine synthase; 98.6 1.6E-05 5.6E-10 82.9 27.8 236 508-767 20-316 (322)
260 3mbr_X Glutamine cyclotransfer 98.6 2E-05 6.8E-10 77.1 24.7 188 505-700 19-223 (243)
261 1flg_A Protein (quinoprotein e 98.5 2E-05 6.9E-10 89.2 25.8 247 453-720 117-525 (582)
262 2xbg_A YCF48-like protein; pho 98.5 0.00098 3.4E-08 69.5 36.0 276 441-762 35-320 (327)
263 3v64_C Agrin; beta propeller, 98.4 0.00058 2E-08 71.9 32.6 234 510-767 37-278 (349)
264 1ijq_A LDL receptor, low-densi 98.4 0.0006 2E-08 70.8 31.6 227 518-766 3-240 (316)
265 3v65_B Low-density lipoprotein 98.4 0.00048 1.6E-08 73.7 31.2 233 511-767 81-321 (386)
266 3qqz_A Putative uncharacterize 98.3 0.00059 2E-08 67.6 29.0 216 540-764 21-253 (255)
267 2fp8_A Strictosidine synthase; 98.3 0.00017 5.8E-09 75.1 26.8 247 442-711 19-313 (322)
268 1ijq_A LDL receptor, low-densi 98.3 0.0017 5.6E-08 67.4 33.4 203 506-719 29-246 (316)
269 2p4o_A Hypothetical protein; p 98.3 0.00041 1.4E-08 71.6 28.2 229 507-755 32-279 (306)
270 3v64_C Agrin; beta propeller, 98.3 0.0016 5.4E-08 68.6 32.4 202 506-719 72-283 (349)
271 2p4o_A Hypothetical protein; p 98.3 0.00059 2E-08 70.4 28.3 223 442-702 32-279 (306)
272 3v65_B Low-density lipoprotein 98.2 0.0011 3.7E-08 70.9 30.8 202 506-719 115-326 (386)
273 1k3i_A Galactose oxidase precu 98.2 8.5E-05 2.9E-09 85.8 23.4 276 446-753 190-530 (656)
274 3p5b_L Low density lipoprotein 98.2 0.003 1E-07 67.8 33.8 231 516-768 83-324 (400)
275 2xe4_A Oligopeptidase B; hydro 98.2 0.00012 4E-09 86.0 24.4 155 549-709 224-398 (751)
276 3p5b_L Low density lipoprotein 98.2 0.0036 1.2E-07 67.2 32.7 204 505-719 110-328 (400)
277 2xbg_A YCF48-like protein; pho 98.2 0.0083 2.9E-07 62.3 34.7 192 507-709 122-320 (327)
278 3qqz_A Putative uncharacterize 98.1 0.0017 5.9E-08 64.2 27.4 200 504-711 24-253 (255)
279 3sov_A LRP-6, low-density lipo 98.0 0.002 6.7E-08 66.8 26.7 227 518-768 6-242 (318)
280 4hw6_A Hypothetical protein, I 98.0 0.0014 4.8E-08 71.1 26.2 246 507-763 139-432 (433)
281 1k3i_A Galactose oxidase precu 98.0 0.0002 6.9E-09 82.6 20.5 268 398-700 195-530 (656)
282 3tc9_A Hypothetical hydrolase; 98.0 0.0032 1.1E-07 68.2 28.4 244 508-763 138-429 (430)
283 3sov_A LRP-6, low-density lipo 97.9 0.0075 2.6E-07 62.3 29.0 200 508-719 36-246 (318)
284 2xe4_A Oligopeptidase B; hydro 97.9 0.00031 1.1E-08 82.3 20.6 194 547-761 175-395 (751)
285 3s94_A LRP-6, low-density lipo 97.9 0.028 9.5E-07 63.8 35.6 331 385-765 43-424 (619)
286 3s94_A LRP-6, low-density lipo 97.9 0.059 2E-06 61.1 39.1 178 566-765 326-511 (619)
287 3amr_A 3-phytase; beta-propell 97.9 0.0041 1.4E-07 64.0 24.9 183 558-763 42-262 (355)
288 3m0c_C LDL receptor, low-densi 97.9 0.018 6.3E-07 66.9 33.3 203 505-718 422-639 (791)
289 3amr_A 3-phytase; beta-propell 97.8 0.0049 1.7E-07 63.4 24.5 192 518-719 42-272 (355)
290 3m0c_C LDL receptor, low-densi 97.8 0.015 5.3E-07 67.6 31.7 230 516-767 395-635 (791)
291 4hw6_A Hypothetical protein, I 97.8 0.0075 2.6E-07 65.3 26.5 241 443-710 140-432 (433)
292 4a0p_A LRP6, LRP-6, low-densit 97.7 0.03 1E-06 63.5 32.1 225 518-767 8-240 (628)
293 3kya_A Putative phosphatase; s 97.6 0.026 9E-07 61.4 27.8 253 508-768 140-479 (496)
294 1n7d_A LDL receptor, low-densi 97.6 0.00039 1.3E-08 80.5 14.0 202 507-719 406-622 (699)
295 3ei3_A DNA damage-binding prot 97.6 0.09 3.1E-06 63.9 35.0 341 385-764 557-999 (1158)
296 3tc9_A Hypothetical hydrolase; 97.6 0.0075 2.5E-07 65.3 23.1 154 547-711 138-301 (430)
297 2p9w_A MAL S 1 allergenic prot 97.5 0.019 6.3E-07 58.6 23.3 162 547-711 14-215 (334)
298 4a0p_A LRP6, LRP-6, low-densit 97.5 0.13 4.5E-06 58.3 33.1 199 506-718 36-244 (628)
299 3ei3_A DNA damage-binding prot 97.4 0.43 1.5E-05 58.0 38.9 304 408-766 527-915 (1158)
300 2p9w_A MAL S 1 allergenic prot 97.4 0.086 2.9E-06 53.7 26.2 201 507-711 13-265 (334)
301 1n7d_A LDL receptor, low-densi 97.3 0.00052 1.8E-08 79.4 10.3 228 518-767 379-617 (699)
302 3kya_A Putative phosphatase; s 97.2 0.041 1.4E-06 59.9 23.1 211 547-765 140-410 (496)
303 2xzh_A Clathrin heavy chain 1; 97.2 0.22 7.6E-06 50.2 30.9 237 447-713 72-334 (365)
304 3a9g_A Putative uncharacterize 97.2 0.17 5.7E-06 53.0 27.3 228 507-752 29-330 (354)
305 2xzh_A Clathrin heavy chain 1; 97.1 0.28 9.7E-06 49.5 31.9 225 516-765 78-333 (365)
306 2ism_A Putative oxidoreductase 97.1 0.13 4.5E-06 53.7 25.2 227 507-752 31-333 (352)
307 1bpo_A Protein (clathrin); cla 97.1 0.41 1.4E-05 50.3 32.0 226 517-765 78-332 (494)
308 3ii7_A Kelch-like protein 7; p 97.0 0.16 5.4E-06 51.8 24.6 186 516-715 56-276 (306)
309 3ii7_A Kelch-like protein 7; p 97.0 0.11 3.8E-06 52.9 23.5 228 518-772 14-278 (306)
310 2vpj_A Kelch-like protein 12; 97.0 0.11 3.7E-06 52.9 23.0 222 525-773 31-285 (301)
311 3sre_A PON1, serum paraoxonase 97.0 0.25 8.6E-06 51.3 25.2 198 546-763 50-297 (355)
312 1bpo_A Protein (clathrin); cla 96.9 0.51 1.7E-05 49.6 33.6 238 446-713 70-333 (494)
313 2xn4_A Kelch-like protein 2; s 96.9 0.24 8.4E-06 50.2 24.7 222 525-773 30-283 (302)
314 3ott_A Two-component system se 96.9 1.1 3.7E-05 52.2 37.1 286 442-766 191-504 (758)
315 2g8s_A Glucose/sorbosone dehyd 96.8 0.31 1.1E-05 50.9 25.0 237 507-762 18-350 (353)
316 2be1_A Serine/threonine-protei 96.8 0.002 7E-08 66.5 7.7 201 558-769 12-236 (339)
317 2vpj_A Kelch-like protein 12; 96.8 0.24 8.1E-06 50.2 23.3 184 516-714 63-281 (301)
318 3sre_A PON1, serum paraoxonase 96.7 0.35 1.2E-05 50.2 24.1 161 524-695 138-328 (355)
319 3pbp_A Nucleoporin NUP82; beta 96.5 0.14 4.6E-06 53.9 19.1 152 554-707 29-208 (452)
320 2ism_A Putative oxidoreductase 96.4 0.52 1.8E-05 49.1 23.4 104 546-654 31-151 (352)
321 2xn4_A Kelch-like protein 2; s 96.4 0.63 2.2E-05 47.0 23.6 186 516-715 62-280 (302)
322 4asc_A Kelch repeat and BTB do 96.4 0.64 2.2E-05 47.4 23.7 222 525-772 13-283 (315)
323 3das_A Putative oxidoreductase 96.4 0.15 5.2E-06 52.7 18.4 115 581-699 26-158 (347)
324 1zgk_A Kelch-like ECH-associat 96.3 0.33 1.1E-05 49.5 20.9 231 516-773 25-294 (308)
325 3ott_A Two-component system se 96.3 2.4 8.4E-05 49.2 37.2 277 441-760 21-303 (758)
326 3pbp_A Nucleoporin NUP82; beta 96.2 0.27 9.2E-06 51.6 19.0 146 516-663 32-208 (452)
327 2be1_A Serine/threonine-protei 96.0 0.32 1.1E-05 50.1 18.2 196 455-672 12-236 (339)
328 1uuj_A Platelet-activating fac 95.9 0.0031 1.1E-07 49.5 2.2 60 5-64 2-63 (88)
329 2uvk_A YJHT; unknown function, 95.9 0.96 3.3E-05 47.0 22.4 88 516-607 20-128 (357)
330 4asc_A Kelch repeat and BTB do 95.8 0.93 3.2E-05 46.1 21.6 177 527-717 69-283 (315)
331 1xi4_A Clathrin heavy chain; a 95.8 0.34 1.2E-05 58.5 19.7 190 517-718 78-296 (1630)
332 3a9g_A Putative uncharacterize 95.7 0.53 1.8E-05 49.1 19.2 145 546-697 29-214 (354)
333 1zgk_A Kelch-like ECH-associat 95.7 1.1 3.6E-05 45.6 21.1 176 525-715 90-291 (308)
334 2uvk_A YJHT; unknown function, 95.7 1.3 4.3E-05 46.0 22.1 56 659-718 286-349 (357)
335 3sbq_A Nitrous-oxide reductase 95.6 0.73 2.5E-05 49.9 19.4 187 516-711 142-408 (638)
336 1cru_A Protein (soluble quinop 95.5 1.6 5.3E-05 47.2 22.5 110 587-700 27-163 (454)
337 2woz_A Kelch repeat and BTB do 95.5 2.6 8.8E-05 42.8 23.8 222 525-772 24-293 (318)
338 1tl2_A L10, protein (tachylect 95.4 0.15 5.2E-06 48.4 12.1 147 547-705 42-204 (236)
339 1xi4_A Clathrin heavy chain; a 95.4 0.9 3.1E-05 55.0 21.0 238 447-714 71-334 (1630)
340 2g8s_A Glucose/sorbosone dehyd 95.1 0.53 1.8E-05 49.1 16.8 108 587-700 18-149 (353)
341 3s25_A Hypothetical 7-bladed b 95.1 2.7 9.1E-05 42.5 21.5 170 514-713 23-218 (302)
342 2xtc_A F-box-like/WD repeat-co 95.0 0.019 6.4E-07 45.4 3.8 32 13-44 5-36 (90)
343 2woz_A Kelch repeat and BTB do 94.9 2.3 7.7E-05 43.2 20.6 176 527-717 80-293 (318)
344 1tl2_A L10, protein (tachylect 94.8 0.34 1.2E-05 46.0 12.5 141 558-709 6-161 (236)
345 2zwa_A Leucine carboxyl methyl 94.7 1.6 5.5E-05 50.1 20.6 195 516-715 398-639 (695)
346 1cru_A Protein (soluble quinop 94.1 3.1 0.00011 44.8 20.4 107 545-654 26-160 (454)
347 3s25_A Hypothetical 7-bladed b 94.1 5.5 0.00019 40.1 26.7 158 526-713 89-257 (302)
348 3das_A Putative oxidoreductase 93.3 8.2 0.00028 39.6 30.1 233 505-752 30-326 (347)
349 2zwa_A Leucine carboxyl methyl 91.7 8.1 0.00028 44.2 20.1 198 555-771 396-640 (695)
350 3qhy_B Beta-lactamase inhibito 91.2 9.1 0.00031 38.1 17.7 224 507-766 24-248 (282)
351 3sbq_A Nitrous-oxide reductase 88.1 2.2 7.4E-05 46.4 10.3 138 567-713 299-480 (638)
352 3qhy_B Beta-lactamase inhibito 87.5 24 0.00081 34.9 19.1 221 442-711 24-246 (282)
353 3q6k_A 43.2 kDa salivary prote 87.3 30 0.001 35.9 22.4 153 526-711 124-306 (381)
354 3q6k_A 43.2 kDa salivary prote 83.7 28 0.00095 36.1 16.0 148 609-764 124-306 (381)
355 2wg3_C Hedgehog-interacting pr 81.8 21 0.00072 38.3 14.8 113 587-701 14-159 (463)
356 4hvt_A Ritya.17583.B, post-pro 77.0 1.1E+02 0.0036 34.9 25.7 181 525-714 216-432 (711)
357 3b7f_A Glycosyl hydrolase, BNR 76.2 76 0.0026 32.8 20.9 202 558-771 24-267 (394)
358 4gq2_M Nucleoporin NUP120; bet 75.8 13 0.00045 44.1 11.9 42 680-721 235-276 (950)
359 2wg3_C Hedgehog-interacting pr 73.8 35 0.0012 36.5 13.6 108 639-755 15-160 (463)
360 4gco_A Protein STI-1; structur 72.1 14 0.00047 31.2 8.2 102 19-127 19-125 (126)
361 3no0_A DNA gyrase subunit A; D 63.8 1.1E+02 0.0039 29.8 18.0 187 558-764 37-246 (276)
362 1elw_A TPR1-domain of HOP; HOP 63.0 41 0.0014 26.6 9.3 104 15-125 6-114 (118)
363 2lni_A Stress-induced-phosphop 62.8 35 0.0012 27.9 9.0 109 12-127 15-128 (133)
364 4gq2_M Nucleoporin NUP120; bet 62.5 84 0.0029 37.1 14.9 40 587-626 236-275 (950)
365 3b7f_A Glycosyl hydrolase, BNR 60.1 1.6E+02 0.0054 30.3 25.1 243 517-771 23-327 (394)
366 4ga2_A E3 SUMO-protein ligase 56.7 36 0.0012 29.5 8.1 93 30-129 14-111 (150)
367 3upv_A Heat shock protein STI1 50.9 64 0.0022 26.3 8.6 89 16-110 7-100 (126)
368 3zwu_A Alkaline phosphatase PH 50.4 37 0.0013 37.5 8.4 58 639-698 477-548 (592)
369 3qou_A Protein YBBN; thioredox 49.6 46 0.0016 32.7 8.5 71 51-128 160-230 (287)
370 3uc1_A DNA gyrase subunit A; D 49.4 2.2E+02 0.0074 28.6 21.4 150 556-711 108-279 (327)
371 4fhn_B Nucleoporin NUP120; pro 48.9 11 0.00037 46.0 4.2 41 681-721 238-278 (1139)
372 1na0_A Designed protein CTPR3; 48.9 85 0.0029 24.9 9.0 103 17-126 13-120 (125)
373 4a9v_A PHOX; hydrolase, beta-p 47.3 61 0.0021 35.5 9.2 61 638-699 476-549 (592)
374 4hvt_A Ritya.17583.B, post-pro 44.2 3.9E+02 0.013 30.1 22.6 218 525-763 156-429 (711)
375 3f7f_A Nucleoporin NUP120; nuc 44.0 67 0.0023 36.2 9.1 36 683-720 224-259 (729)
376 2dba_A Smooth muscle cell asso 43.6 1.4E+02 0.0047 24.7 10.2 108 12-126 27-142 (148)
377 3ma5_A Tetratricopeptide repea 43.1 27 0.00091 27.7 4.5 71 52-128 17-88 (100)
378 3mkr_A Coatomer subunit epsilo 42.2 1E+02 0.0035 30.2 9.7 83 15-108 66-156 (291)
379 2vyi_A SGTA protein; chaperone 41.4 1.3E+02 0.0043 24.0 9.0 101 19-126 18-123 (131)
380 2fo7_A Synthetic consensus TPR 40.1 1.3E+02 0.0044 24.0 8.9 102 19-127 7-113 (136)
381 3u4t_A TPR repeat-containing p 40.0 94 0.0032 29.4 9.0 110 15-128 5-119 (272)
382 2xtc_A F-box-like/WD repeat-co 39.6 12 0.00041 29.5 1.7 30 196-225 6-35 (90)
383 3hym_B Cell division cycle pro 39.1 1.6E+02 0.0056 28.5 10.9 103 18-127 94-203 (330)
384 1hxi_A PEX5, peroxisome target 38.5 45 0.0015 27.5 5.4 72 50-128 25-96 (121)
385 2d68_A FOP, FGFR1OP; alpha hel 37.7 26 0.00088 27.1 3.2 29 15-43 20-48 (82)
386 2vgx_A Chaperone SYCD; alterna 37.6 76 0.0026 27.2 7.0 90 15-110 23-117 (148)
387 2zux_A YESW protein; beta-prop 37.5 4.3E+02 0.015 28.7 20.0 17 526-542 230-246 (591)
388 3gyz_A Chaperone protein IPGC; 37.3 44 0.0015 29.2 5.3 72 51-129 45-116 (151)
389 3gyz_A Chaperone protein IPGC; 37.1 1.3E+02 0.0044 26.1 8.4 93 14-112 37-134 (151)
390 2xcb_A PCRH, regulatory protei 36.9 46 0.0016 28.2 5.4 72 51-129 27-98 (142)
391 3zwu_A Alkaline phosphatase PH 36.6 78 0.0027 34.9 8.2 61 681-751 476-548 (592)
392 3upv_A Heat shock protein STI1 36.6 49 0.0017 27.1 5.4 72 51-129 13-84 (126)
393 1na3_A Designed protein CTPR2; 36.6 59 0.002 24.3 5.6 68 52-126 19-86 (91)
394 3sz7_A HSC70 cochaperone (SGT) 36.4 90 0.0031 27.0 7.5 90 16-111 14-108 (164)
395 3mkr_A Coatomer subunit epsilo 36.3 99 0.0034 30.3 8.5 101 21-129 109-212 (291)
396 4gco_A Protein STI-1; structur 35.8 49 0.0017 27.6 5.3 72 51-129 22-93 (126)
397 3urz_A Uncharacterized protein 35.7 1.4E+02 0.0048 27.2 9.0 108 14-128 5-133 (208)
398 2kc7_A BFR218_protein; tetratr 34.8 59 0.002 25.1 5.4 57 50-111 8-64 (99)
399 2kck_A TPR repeat; tetratricop 34.7 65 0.0022 25.0 5.8 70 52-128 16-87 (112)
400 2xcb_A PCRH, regulatory protei 34.2 94 0.0032 26.1 7.0 91 14-110 19-114 (142)
401 2kck_A TPR repeat; tetratricop 34.1 70 0.0024 24.8 5.9 89 19-111 12-106 (112)
402 1elw_A TPR1-domain of HOP; HOP 34.1 57 0.002 25.7 5.4 71 51-128 13-83 (118)
403 3as5_A MAMA; tetratricopeptide 33.9 1.7E+02 0.0058 25.1 9.1 102 19-127 14-120 (186)
404 2lni_A Stress-induced-phosphop 33.7 46 0.0016 27.2 4.8 72 50-128 24-95 (133)
405 4a9v_A PHOX; hydrolase, beta-p 33.4 1.3E+02 0.0046 32.8 9.2 62 680-751 475-548 (592)
406 2vgx_A Chaperone SYCD; alterna 33.2 57 0.002 28.1 5.4 72 51-129 30-101 (148)
407 3no0_A DNA gyrase subunit A; D 33.1 3.5E+02 0.012 26.3 20.0 184 516-710 36-245 (276)
408 4fhn_B Nucleoporin NUP120; pro 32.9 1.6E+02 0.0054 35.7 10.9 33 736-769 241-273 (1139)
409 3sz7_A HSC70 cochaperone (SGT) 32.7 57 0.0019 28.4 5.4 72 51-129 20-91 (164)
410 2dba_A Smooth muscle cell asso 32.5 45 0.0015 27.9 4.6 78 48-129 34-111 (148)
411 4gcn_A Protein STI-1; structur 32.4 73 0.0025 26.4 5.8 99 22-125 17-124 (127)
412 3q49_B STIP1 homology and U bo 31.9 1.6E+02 0.0054 24.0 8.1 92 13-110 9-105 (137)
413 2k9m_A RNA polymerase sigma fa 31.7 20 0.00068 30.7 1.9 87 13-112 21-122 (130)
414 3ct5_A Morphogenesis protein 1 30.9 24 0.00082 31.4 2.4 43 3-45 4-51 (159)
415 2wpv_A GET4, UPF0363 protein Y 30.8 1.6E+02 0.0054 29.4 8.6 23 46-68 17-39 (312)
416 1hxi_A PEX5, peroxisome target 30.7 73 0.0025 26.2 5.5 90 15-110 19-113 (121)
417 3vtx_A MAMA; tetratricopeptide 30.3 2.3E+02 0.0079 24.6 9.4 33 94-127 119-151 (184)
418 2fo7_A Synthetic consensus TPR 30.1 1.7E+02 0.0059 23.1 8.0 80 24-109 46-130 (136)
419 3elq_A Arylsulfate sulfotransf 29.5 5.8E+02 0.02 27.7 18.2 132 639-775 208-395 (571)
420 2xz2_A CSTF-50, isoform B; RNA 29.3 48 0.0016 24.2 3.2 32 12-43 15-46 (66)
421 2xev_A YBGF; tetratricopeptide 29.0 66 0.0023 26.2 5.0 56 51-110 11-67 (129)
422 1na0_A Designed protein CTPR3; 29.0 83 0.0028 24.9 5.6 71 50-127 17-87 (125)
423 1elr_A TPR2A-domain of HOP; HO 28.9 1.4E+02 0.0048 23.7 7.1 110 16-127 7-122 (131)
424 3uc1_A DNA gyrase subunit A; D 28.8 4.5E+02 0.015 26.2 24.9 239 407-666 6-278 (327)
425 2r5s_A Uncharacterized protein 28.8 1.3E+02 0.0045 26.4 7.3 108 15-129 8-120 (176)
426 2l6j_A TPR repeat-containing p 28.5 1E+02 0.0036 23.9 6.0 56 51-112 13-68 (111)
427 3as5_A MAMA; tetratricopeptide 28.4 2E+02 0.007 24.5 8.7 106 16-128 44-155 (186)
428 2vyi_A SGTA protein; chaperone 28.4 85 0.0029 25.1 5.6 72 50-128 20-91 (131)
429 2ho1_A Type 4 fimbrial biogene 28.4 3.4E+02 0.012 24.8 10.8 100 23-127 81-185 (252)
430 2pl2_A Hypothetical conserved 28.2 1.7E+02 0.0059 26.7 8.3 110 16-129 8-130 (217)
431 2nxp_A Transcription initiatio 28.1 31 0.0011 30.6 2.6 48 80-128 52-100 (156)
432 2j4b_A TAF5, transcription ini 26.8 23 0.00078 30.7 1.5 44 80-125 33-77 (138)
433 1a17_A Serine/threonine protei 26.3 2.8E+02 0.0097 23.1 9.1 89 17-111 17-110 (166)
434 2q7f_A YRRB protein; TPR, prot 26.3 1.9E+02 0.0064 26.4 8.3 96 24-126 68-168 (243)
435 2nsz_A Programmed cell death p 26.0 87 0.003 26.6 5.1 61 88-163 13-74 (129)
436 1vk8_A Hypothetical protein TM 25.9 6.5 0.00022 32.3 -2.1 39 29-68 34-72 (106)
437 2q7f_A YRRB protein; TPR, prot 25.7 2.9E+02 0.0099 25.0 9.6 105 16-127 26-135 (243)
438 2fbn_A 70 kDa peptidylprolyl i 25.7 2.8E+02 0.0097 24.5 9.2 72 51-129 97-168 (198)
439 4a18_Q RPL36, 60S ribosomal pr 25.7 48 0.0016 26.6 3.0 45 82-127 51-98 (104)
440 3q49_B STIP1 homology and U bo 25.2 1E+02 0.0035 25.2 5.6 73 50-129 17-89 (137)
441 3hym_B Cell division cycle pro 24.6 2.5E+02 0.0086 27.0 9.3 106 16-128 25-136 (330)
442 2ho1_A Type 4 fimbrial biogene 24.6 2.6E+02 0.009 25.6 9.1 90 15-110 38-133 (252)
443 3uq3_A Heat shock protein STI1 24.3 1.9E+02 0.0063 26.7 7.9 52 52-109 149-200 (258)
444 4g26_A Pentatricopeptide repea 24.1 2.4E+02 0.0081 30.3 9.4 104 17-126 109-219 (501)
445 1ihg_A Cyclophilin 40; ppiase 24.0 2.5E+02 0.0086 28.6 9.3 72 51-129 282-353 (370)
446 2xev_A YBGF; tetratricopeptide 23.8 2.8E+02 0.0094 22.1 8.2 93 16-112 5-106 (129)
447 3iug_A RHO/CDC42/RAC GTPase-ac 23.7 1.1E+02 0.0037 29.0 5.8 104 16-127 40-156 (229)
448 2lxb_A Small glutamine-rich te 23.4 55 0.0019 24.7 2.7 19 9-27 3-21 (74)
449 1zi0_A DNA gyrase subunit A; b 23.2 5.4E+02 0.018 25.3 25.4 272 398-698 1-303 (307)
450 3k9i_A BH0479 protein; putativ 22.6 58 0.002 26.3 3.3 56 51-112 36-91 (117)
451 3urz_A Uncharacterized protein 22.4 87 0.003 28.7 4.8 79 48-129 10-100 (208)
452 3qwp_A SET and MYND domain-con 22.0 1.3E+02 0.0043 31.7 6.5 96 14-112 288-401 (429)
453 3uq3_A Heat shock protein STI1 21.1 2.4E+02 0.0082 25.9 8.0 103 15-127 80-183 (258)
454 3ieg_A DNAJ homolog subfamily 21.1 5.6E+02 0.019 24.6 11.5 17 93-109 165-181 (359)
455 4b4t_P 26S proteasome regulato 20.7 1.7E+02 0.0058 30.9 7.2 96 13-110 136-246 (445)
456 3f7f_A Nucleoporin NUP120; nuc 20.2 1.3E+02 0.0045 33.9 6.2 37 507-543 222-259 (729)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.3e-48 Score=453.01 Aligned_cols=427 Identities=11% Similarity=0.068 Sum_probs=339.3
Q ss_pred CCcccccccc-cchhhhh-chhh---------------hhcC---cccc---------ccccCccccchhhhhhhhccCC
Q 003871 278 QQKLPSDFAE-RAHLFDD-FKVL---------------VERN---PMLQ---------DKLKFPSMDKSRLLSLIKQIMD 328 (790)
Q Consensus 278 ~~~l~s~~~d-~v~l~~~-~~~~---------------~~~~---~~la---------~~i~iwd~~~~~~~~~l~~h~~ 328 (790)
++++||++.| +|++||. .+.. +.|+ ++|| +.|.+|| .++....+.+|..
T Consensus 71 g~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~ 148 (611)
T 1nr0_A 71 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQAR 148 (611)
T ss_dssp SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSS
T ss_pred CcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCC
Confidence 4789999999 9999995 3221 1222 5555 2678888 4666778899999
Q ss_pred CccccccccCCC--------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 329 WWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTS 400 (790)
Q Consensus 329 ~v~v~~i~fspd--------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg 400 (790)
.|. +++|+|+ +.|++|+ +||..+++++ .++.+|...| ++++|+ |||
T Consensus 149 ~v~--~v~f~p~~~~~l~s~s~D~~v~--lwd~~~~~~~--------~~l~~H~~~V-------~~v~fs-------pdg 202 (611)
T 1nr0_A 149 AMN--SVDFKPSRPFRIISGSDDNTVA--IFEGPPFKFK--------STFGEHTKFV-------HSVRYN-------PDG 202 (611)
T ss_dssp CEE--EEEECSSSSCEEEEEETTSCEE--EEETTTBEEE--------EEECCCSSCE-------EEEEEC-------TTS
T ss_pred Cce--EEEECCCCCeEEEEEeCCCeEE--EEECCCCeEe--------eeeccccCce-------EEEEEC-------CCC
Confidence 988 9999998 7899999 9999998887 8899999999 999999 999
Q ss_pred CCCcccceeccCCCceEeeeccccCCCCceee-ee---ccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 003871 401 LPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LL---LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 476 (790)
Q Consensus 401 ~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~-~~---l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~ 476 (790)
+++ |+|+.|++|++||+.. +.+.. +. +...+|.+.|.+++|+|+|++|++++.|++|++||+.++...
T Consensus 203 ~~l----as~s~D~~i~lwd~~~----g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~ 274 (611)
T 1nr0_A 203 SLF----ASTGGDGTIVLYNGVD----GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 274 (611)
T ss_dssp SEE----EEEETTSCEEEEETTT----CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred CEE----EEEECCCcEEEEECCC----CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence 999 9999999999999863 33322 21 011269999999999999999999999999999999876541
Q ss_pred ----cc--------------cc----ccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEE
Q 003871 477 ----LE--------------EE----NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFS 531 (790)
Q Consensus 477 ----~g--------------~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd 531 (790)
.+ .. ......++|+...+...... .+|...|.+++|+ +++|++++ |++|++||
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~--~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd 352 (611)
T 1nr0_A 275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVR--YGHNKAITALSSSADGKTLFSADAEGHINSWD 352 (611)
T ss_dssp EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEE--cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence 00 00 01123478888877655433 3799999999999 89999999 99999999
Q ss_pred CCCCcEEEEE-cCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCce--------------------------------
Q 003871 532 LETFQTLATF-ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKT-------------------------------- 578 (790)
Q Consensus 532 ~~~~~~~~~~-~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~-------------------------------- 578 (790)
+.+++....+ .+|...|.+++|++++.+++++.|+++++|+..++..
T Consensus 353 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~ 432 (611)
T 1nr0_A 353 ISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 432 (611)
T ss_dssp TTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS
T ss_pred CCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCc
Confidence 9999887766 5788999999999777888999999999999764321
Q ss_pred ---------EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCC
Q 003871 579 ---------KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 649 (790)
Q Consensus 579 ---------~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~ 649 (790)
+..+. |...+.+++|+|||++||+|+.|++|++||+.++... .+. . .+|. ..|++++|+|+|
T Consensus 433 ~v~~~~~~~~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~---~~~-~-~~h~---~~v~~v~fspdg 503 (611)
T 1nr0_A 433 HIAIYSHGKLTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS---EVK-T-IVHP---AEITSVAFSNNG 503 (611)
T ss_dssp EEEEEETTEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE---EEE-E-EECS---SCEEEEEECTTS
T ss_pred eEEEEeCCceeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCcee---eee-c-cCCC---CceEEEEECCCC
Confidence 11111 4567899999999999999999999999999875321 122 2 3455 689999999999
Q ss_pred CEEEEE-eCCcEEEEECCC-CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE-E-EEeccccccC
Q 003871 650 IHLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL-R-CQINLTAYAQ 725 (790)
Q Consensus 650 ~~l~~~-~dg~I~iwd~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~-~-~~~~~~~~~~ 725 (790)
++|+++ .|+.|++||+.+ ++.........|...|.+++|+|||++|++|+.|++|++||+.++.. . ..+.
T Consensus 504 ~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~------ 577 (611)
T 1nr0_A 504 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG------ 577 (611)
T ss_dssp SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT------
T ss_pred CEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhc------
Confidence 999995 899999999987 55544312223789999999999999999999999999999998752 2 2322
Q ss_pred CCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEec
Q 003871 726 PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 726 ~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
||....|. +++|+| ++. |++++.||+|++|++
T Consensus 578 -~h~~~~v~--~v~fs~-d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 578 -AHAMSSVN--SVIWLN-ETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp -SSTTSCEE--EEEEEE-TTE-EEEEETTSCEEEEEC
T ss_pred -cCcccCee--EEEEcC-CCE-EEEecCCCCEEEEec
Confidence 55345666 999999 787 999999999999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.2e-47 Score=441.31 Aligned_cols=391 Identities=14% Similarity=0.097 Sum_probs=312.5
Q ss_pred ccccCccccchhhhhhhhccCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCC
Q 003871 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (790)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~ 379 (790)
+.|.+||+.+++....+.+|.+.|. +++|||| +.|++|+ |||..+++... ...+.+|.+.|
T Consensus 39 ~~v~l~~~~~~~~~~~~~~h~~~v~--~~~~spdg~~lasg~~d~~v~--lWd~~~~~~~~------~~~~~~~~~~v-- 106 (611)
T 1nr0_A 39 TSVYTVPVGSLTDTEIYTEHSHQTT--VAKTSPSGYYCASGDVHGNVR--IWDTTQTTHIL------KTTIPVFSGPV-- 106 (611)
T ss_dssp TEEEEEETTCSSCCEEECCCSSCEE--EEEECTTSSEEEEEETTSEEE--EEESSSTTCCE------EEEEECSSSCE--
T ss_pred CEEEEecCCCcccCeEecCCCCceE--EEEECCCCcEEEEEeCCCCEE--EeECCCCccee------eEeecccCCce--
Confidence 5677888888888889999999987 9999999 7899999 99997665421 05678899999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccceeccCC----CceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCC-
Q 003871 380 GDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSL----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD- 454 (790)
Q Consensus 380 ~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d----~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~- 454 (790)
.+++|+ |||+.+ ++++.+ +.|++||.. .....+ .+|...|.+++|+|++.
T Consensus 107 -----~~v~fs-------~dg~~l----~~~~~~~~~~~~v~~wd~~-----~~~~~l----~gh~~~v~~v~f~p~~~~ 161 (611)
T 1nr0_A 107 -----KDISWD-------SESKRI----AAVGEGRERFGHVFLFDTG-----TSNGNL----TGQARAMNSVDFKPSRPF 161 (611)
T ss_dssp -----EEEEEC-------TTSCEE----EEEECCSSCSEEEEETTTC-----CBCBCC----CCCSSCEEEEEECSSSSC
T ss_pred -----EEEEEC-------CCCCEE----EEEECCCCceeEEEEeeCC-----CCccee----cCCCCCceEEEECCCCCe
Confidence 999999 999999 887765 478888863 222222 37999999999999987
Q ss_pred EEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEE
Q 003871 455 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFS 531 (790)
Q Consensus 455 ~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd 531 (790)
.|++++.|++|++||..+.. +... ..+|...|.+++|+ +++|++++ |++|++||
T Consensus 162 ~l~s~s~D~~v~lwd~~~~~---------------------~~~~--l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd 218 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEGPPFK---------------------FKST--FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218 (611)
T ss_dssp EEEEEETTSCEEEEETTTBE---------------------EEEE--ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCe---------------------Eeee--eccccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence 59999999999999966422 2221 23799999999999 88999999 99999999
Q ss_pred CCCCcEEEEEc-------CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE-----------------------
Q 003871 532 LETFQTLATFA-------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA----------------------- 580 (790)
Q Consensus 532 ~~~~~~~~~~~-------~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~----------------------- 580 (790)
+.+++....+. +|...|.+++|+|+| +|++|+.|++|++||+.+++.+.
T Consensus 219 ~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (611)
T 1nr0_A 219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 298 (611)
T ss_dssp TTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred CCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEE
Confidence 99999988884 799999999999999 99999999999999998876543
Q ss_pred --------------------EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeece------e---------
Q 003871 581 --------------------KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK------F--------- 625 (790)
Q Consensus 581 --------------------~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~------~--------- 625 (790)
.+.+|...|++++|+|||++|++++.|++|++||+.+++..... .
T Consensus 299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~ 378 (611)
T 1nr0_A 299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 378 (611)
T ss_dssp EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT
T ss_pred EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC
Confidence 34579999999999999999999999999999999876432110 0
Q ss_pred -----------eee--------------------------e-ccC----------------C----CCCCCCeEEEEEeC
Q 003871 626 -----------LHS--------------------------F-QTG----------------L----VPETTIVNHIQFHP 647 (790)
Q Consensus 626 -----------l~~--------------------------~-~~~----------------~----~~~~~~v~~i~~sp 647 (790)
++. + +.+ + .++...+.+++|+|
T Consensus 379 ~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp 458 (611)
T 1nr0_A 379 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN 458 (611)
T ss_dssp SCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT
T ss_pred CcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC
Confidence 000 0 000 0 00114578999999
Q ss_pred CCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEeccccccC
Q 003871 648 DQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQ 725 (790)
Q Consensus 648 ~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~-~~~~~~~~~~~~~~ 725 (790)
+|++|+++ .|+.|++||+.++....... ..|...|++++|+|||++|++++.|++|++||+.+ +++..... .
T Consensus 459 dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~-----~ 532 (611)
T 1nr0_A 459 DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS-----W 532 (611)
T ss_dssp TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC-----C
T ss_pred CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee-----e
Confidence 99999995 89999999998765422111 24789999999999999999999999999999987 55433200 1
Q ss_pred CCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCcc
Q 003871 726 PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 767 (790)
Q Consensus 726 ~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~ 767 (790)
.+| ...|+ +++|+| ||++||+|+.|++|++|++.+++.
T Consensus 533 ~~H-~~~V~--~v~fsp-dg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 533 TFH-TAKVA--CVSWSP-DNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp CCC-SSCEE--EEEECT-TSSEEEEEETTSCEEEEETTCTTS
T ss_pred eec-cccee--EEEECC-CCCEEEEEECCCcEEEEECCCccc
Confidence 134 55677 999999 899999999999999999988753
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.2e-46 Score=427.50 Aligned_cols=364 Identities=17% Similarity=0.245 Sum_probs=315.2
Q ss_pred ccccCccccchhhhhhhhccCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCC
Q 003871 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (790)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~ 379 (790)
+.|++||. +++.+..+.+|...+. +++|+|+ +.|+.|+ +||. +++.+ ..+.+|...|
T Consensus 202 ~~v~~w~~-~~~~~~~~~~~~~~v~--~~~~s~dg~~l~~~~~d~~i~--~w~~-~~~~~--------~~~~~~~~~v-- 265 (577)
T 2ymu_A 202 KTVKLWNR-NGQLLQTLTGHSSSVR--GVAFSPDGQTIASASDDKTVK--LWNR-NGQLL--------QTLTGHSSSV-- 265 (577)
T ss_dssp SEEEEECT-TSCEEEEEECCSSCEE--EEEECTTSSCEEEEETTSCEE--EECT-TSCEE--------EEECCCSSCE--
T ss_pred CEEEEEeC-CCcEEEEEecCCCCEE--EEEECCCCCEEEEEeCCCEEE--EEeC-CCCEE--------EEEecCCCCE--
Confidence 77888885 5677788889999887 9999998 7899999 9996 56665 7788999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEE
Q 003871 380 GDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL 459 (790)
Q Consensus 380 ~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~ 459 (790)
++++|+ |||+.+ ++++.|+.|++|+.. ......+ .+|...|.+++|+|++++++++
T Consensus 266 -----~~v~~~-------~d~~~l----~~~~~d~~i~~w~~~----~~~~~~~----~~h~~~v~~~~~~~~~~~l~t~ 321 (577)
T 2ymu_A 266 -----NGVAFR-------PDGQTI----ASASDDKTVKLWNRN----GQLLQTL----TGHSSSVWGVAFSPDGQTIASA 321 (577)
T ss_dssp -----EEEEEC-------TTSSEE----EEEETTSCEEEEETT----SCEEEEE----CCCSSCEEEEEECTTSSEEEEE
T ss_pred -----EEEEEc-------CCCCEE----EEEeCCCEEEEEeCC----CcEEEEE----ecCCCCeEEEEECCCCCEEEEE
Confidence 999999 999999 999999999999985 2333332 3799999999999999999999
Q ss_pred eCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCc
Q 003871 460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ 536 (790)
Q Consensus 460 ~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~ 536 (790)
+.|+.|++|+..... +.. ..+|...|.+++|+ ++++++++ |+.|++||. +++
T Consensus 322 ~~d~~i~~w~~~~~~---------------------~~~---~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~ 376 (577)
T 2ymu_A 322 SDDKTVKLWNRNGQH---------------------LQT---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQ 376 (577)
T ss_dssp ETTSCEEEEETTSCE---------------------EEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCC
T ss_pred eCCCeEEEEeCCCCe---------------------eEE---EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCC
Confidence 999999999976421 111 12688999999999 88999998 899999996 578
Q ss_pred EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 003871 537 TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615 (790)
Q Consensus 537 ~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~ 615 (790)
.+..+.+|...|.+++|+|+| +|++|+.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||.
T Consensus 377 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~ 455 (577)
T 2ymu_A 377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR 455 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 888999999999999999999 9999999999999995 57888899999999999999999999999999999999997
Q ss_pred CCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCE
Q 003871 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC 694 (790)
Q Consensus 616 ~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 694 (790)
.. ..+. ...+|. ..|++++|+|++++|+++ .|+.|++||. +++++..+.+ |...|++++|+|||++
T Consensus 456 ~~------~~~~-~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~--h~~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 456 NG------QLLQ-TLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVRGVAFSPDGQT 522 (577)
T ss_dssp TS------CEEE-EEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEEC--CSSCEEEEEECTTSSC
T ss_pred CC------CEEE-EEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeC--CCCCEEEEEEcCCCCE
Confidence 54 2233 223555 689999999999999995 8999999996 6888888865 7899999999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEe
Q 003871 695 IYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 761 (790)
Q Consensus 695 l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~ 761 (790)
|++++.||.|++||. +++.+..+. || ...|+ +++|+| |+++|+|++.||+|++||
T Consensus 523 l~s~~~dg~v~lwd~-~~~~~~~~~-------~h-~~~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 523 IASASDDKTVKLWNR-NGQLLQTLT-------GH-SSSVW--GVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEETTSEEEEECT-TSCEEEEEE-------CC-SSCEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EEEEECcCEEEEEeC-CCCEEEEEc-------CC-CCCEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 999999999999996 677777776 55 45666 999999 899999999999999997
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.4e-45 Score=423.20 Aligned_cols=403 Identities=16% Similarity=0.224 Sum_probs=322.4
Q ss_pred CCcccccccccchhhhhchhhhhcCccccccccCccccchhhhhhhhccCCCccccccccCCC-------CCCCcceeee
Q 003871 278 QQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKD 350 (790)
Q Consensus 278 ~~~l~s~~~d~v~l~~~~~~~~~~~~~la~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~i 350 (790)
++++||++.| +.|+|||. +++++.++.+|.+.|. +++|+|| +.|++|+ +
T Consensus 28 g~~las~~~d-------------------~~v~iWd~-~~~~~~~l~gh~~~V~--~l~fspdg~~las~~~d~~i~--v 83 (577)
T 2ymu_A 28 GQTIASASDD-------------------KTVKLWNR-NGQLLQTLTGHSSSVW--GVAFSPDGQTIASASDDKTVK--L 83 (577)
T ss_dssp SSCEEEEETT-------------------SEEEEECT-TSCEEEEEECCSSCEE--EEEECTTSSEEEEEETTSCEE--E
T ss_pred CCEEEEEeCC-------------------CEEEEEEC-CCCEEEEEeCCCCCEE--EEEECCCCCEEEEEeCCCEEE--E
Confidence 3789999999 88888885 7788889999999988 9999999 7899999 9
Q ss_pred ccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc--------------------------
Q 003871 351 FPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDA-------------------------- 404 (790)
Q Consensus 351 wd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la-------------------------- 404 (790)
||. +|+++ ..+.+|...| .+++|+ |||++++
T Consensus 84 Wd~-~~~~~--------~~~~~~~~~v-------~~~~~s-------~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~ 140 (577)
T 2ymu_A 84 WNR-NGQLL--------QTLTGHSSSV-------RGVAFS-------PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 140 (577)
T ss_dssp EET-TSCEE--------EEECCCSSCE-------EEEEEC-------TTSSEEEEEETTSCEEEEETTCCEEEEECCCSS
T ss_pred EEC-CCCEE--------EEEECCCCCE-------EEEEEC-------CCCCEEEEEcCCCceeecccccceeeeccCCCC
Confidence 996 67776 7888898888 777777 5555550
Q ss_pred ----------------------------------------------------ccceeccCCCceEeeeccccCCCCceee
Q 003871 405 ----------------------------------------------------DSAVCAKSLEKSVNLKLQLINEPSECRT 432 (790)
Q Consensus 405 ----------------------------------------------------~~~at~s~d~~i~iwd~~~~~~~~~~~~ 432 (790)
..+++++.|+.|++||.. ......
T Consensus 141 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~----~~~~~~ 216 (577)
T 2ymu_A 141 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----GQLLQT 216 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----SCEEEE
T ss_pred ceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC----CcEEEE
Confidence 000444445555555432 122222
Q ss_pred eeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc----------------ccccccc----ccccccccCC
Q 003871 433 LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ----------------SLEEENV----NMESQLYQPS 492 (790)
Q Consensus 433 ~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~----------------~~g~~~~----~~~~~i~~~~ 492 (790)
+ .+|...|.+++|+|+|++|++++.|+.|++|+...... +.+.... ....++|+..
T Consensus 217 ~----~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~ 292 (577)
T 2ymu_A 217 L----TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN 292 (577)
T ss_dssp E----ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred E----ecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC
Confidence 2 25899999999999999999999999999999754322 1121111 1134788865
Q ss_pred CceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcE
Q 003871 493 SKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSI 568 (790)
Q Consensus 493 ~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I 568 (790)
.. ..... .+|...|.+++|+ ++++++++ |+.|++||.. +..+..+.+|...+.+++|+|++ .+++|+.||.|
T Consensus 293 ~~-~~~~~--~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 368 (577)
T 2ymu_A 293 GQ-LLQTL--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 368 (577)
T ss_dssp SC-EEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred Cc-EEEEE--ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 43 33322 3799999999999 88999998 8999999986 55677888999999999999999 99999999999
Q ss_pred EEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC
Q 003871 569 LVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 648 (790)
Q Consensus 569 ~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~ 648 (790)
++||. +++.+..+.+|...|++++|+||+++|++++.|+.|++||... ..+. ...+|. ..|++++|+|+
T Consensus 369 ~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~------~~~~-~~~~~~---~~v~~~~~s~d 437 (577)
T 2ymu_A 369 KLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------QLLQ-TLTGHS---SSVWGVAFSPD 437 (577)
T ss_dssp EEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC------CEEE-EEECCS---SCEEEEEECTT
T ss_pred EEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC------CEEE-EecCCC---CCeEEEEECCC
Confidence 99995 5788889999999999999999999999999999999999654 2333 233555 68999999999
Q ss_pred CCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCC
Q 003871 649 QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG 727 (790)
Q Consensus 649 ~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~g 727 (790)
+++|+++ .|+.|++||. +++.+..+.. |...|.+++|+|++++|++++.|+.|++||. +++.+..+. |
T Consensus 438 ~~~l~~~~~d~~v~~w~~-~~~~~~~~~~--~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~-------~ 506 (577)
T 2ymu_A 438 DQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------G 506 (577)
T ss_dssp SSEEEEEETTSEEEEEET-TSCEEEEEEC--CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE-------C
T ss_pred CCEEEEEcCCCEEEEEEC-CCCEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe-------C
Confidence 9999985 8999999997 5677777764 6899999999999999999999999999995 677777776 5
Q ss_pred CcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 728 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 728 h~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
| ...|. +++|+| ++++||+++.||.|++||. +++
T Consensus 507 h-~~~v~--~l~~s~-dg~~l~s~~~dg~v~lwd~-~~~ 540 (577)
T 2ymu_A 507 H-SSSVR--GVAFSP-DGQTIASASDDKTVKLWNR-NGQ 540 (577)
T ss_dssp C-SSCEE--EEEECT-TSSCEEEEETTSEEEEECT-TSC
T ss_pred C-CCCEE--EEEEcC-CCCEEEEEECcCEEEEEeC-CCC
Confidence 5 44666 999999 8999999999999999996 444
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-44 Score=398.34 Aligned_cols=286 Identities=17% Similarity=0.188 Sum_probs=249.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
..+.+|.++| ++++|+ |+++++ ++|+.|++|++||+.. +.+.... .+|.+.|.++
T Consensus 102 ~~l~gh~~~V-------~~~~~~-------p~~~~l----~s~s~Dg~i~vwd~~~----~~~~~~l---~~h~~~V~~v 156 (410)
T 1vyh_C 102 YALSGHRSPV-------TRVIFH-------PVFSVM----VSASEDATIKVWDYET----GDFERTL---KGHTDSVQDI 156 (410)
T ss_dssp CEEECCSSCE-------EEEEEC-------SSSSEE----EEEESSSCEEEEETTT----CCCCEEE---CCCSSCEEEE
T ss_pred EeecccCCcE-------EEEEEc-------CCCCEE----EEEeCCCeEEEEECCC----CcEEEEE---eccCCcEEEE
Confidence 4456899999 999999 999999 9999999999999973 4333322 3799999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecCCeE
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKI 527 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I 527 (790)
+|+|+|++|++|+.|++|++||+.+
T Consensus 157 ~~~~~~~~l~sgs~D~~i~iwd~~~------------------------------------------------------- 181 (410)
T 1vyh_C 157 SFDHSGKLLASCSADMTIKLWDFQG------------------------------------------------------- 181 (410)
T ss_dssp EECTTSSEEEEEETTSCCCEEETTS-------------------------------------------------------
T ss_pred EEcCCCCEEEEEeCCCeEEEEeCCC-------------------------------------------------------
Confidence 9999999999999999888877543
Q ss_pred EEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeC
Q 003871 528 SIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA 606 (790)
Q Consensus 528 ~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~ 606 (790)
++++..+.+|...|.+++|+|++ .+++|+.|++|++||+.++.++..+.+|...|.++.++|+++++++|+.
T Consensus 182 -------~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~ 254 (410)
T 1vyh_C 182 -------FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 254 (410)
T ss_dssp -------SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred -------CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC
Confidence 44556667899999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC--------------------CCEEEEE-eCCcEEEEEC
Q 003871 607 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--------------------QIHLLSI-HEGQIDVYEA 665 (790)
Q Consensus 607 dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~--------------------~~~l~~~-~dg~I~iwd~ 665 (790)
|++|++||+.+++. .. ...+|. ..|.+++|+|+ +.+|+++ .|+.|++||+
T Consensus 255 D~~v~vwd~~~~~~-----~~-~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~ 325 (410)
T 1vyh_C 255 DQTVRVWVVATKEC-----KA-ELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325 (410)
T ss_dssp TSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred CCeEEEEECCCCce-----ee-EecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence 99999999998543 22 223455 68999999996 5678885 8999999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCC
Q 003871 666 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 745 (790)
Q Consensus 666 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 745 (790)
++++++..+.+ |...|.+++|+|+|++|++|+.||.|++||+.+++.+..+. +| ...|. +++|+| ++
T Consensus 326 ~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-------~h-~~~v~--~l~~~~-~~ 392 (410)
T 1vyh_C 326 STGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-------AH-EHFVT--SLDFHK-TA 392 (410)
T ss_dssp TTTEEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-------CC-SSCEE--EEEECS-SS
T ss_pred CCCceEEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc-------CC-CCcEE--EEEEcC-CC
Confidence 99999988865 78999999999999999999999999999999999888876 45 44566 999999 89
Q ss_pred CEEEEEeCCCcEEEEec
Q 003871 746 NRIALGLTNGRVHVIEP 762 (790)
Q Consensus 746 ~~las~s~Dg~i~iW~~ 762 (790)
.+|++|+.||+|+||++
T Consensus 393 ~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 393 PYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEETTSEEEEEC-
T ss_pred CEEEEEeCCCcEEEEeC
Confidence 99999999999999986
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.8e-43 Score=441.57 Aligned_cols=412 Identities=14% Similarity=0.146 Sum_probs=347.1
Q ss_pred CcccccccccchhhhhchhhhhcCccccccccCccccchhhhhhhhccCCCccccccccCCC-------CCCCcceeeec
Q 003871 279 QKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDF 351 (790)
Q Consensus 279 ~~l~s~~~d~v~l~~~~~~~~~~~~~la~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iw 351 (790)
+++|+++.| |+|++||..+++.+..+.+|.+.|. +++|+|+ +.|++|+ +|
T Consensus 628 ~~l~s~~~d-------------------~~i~vw~~~~~~~~~~~~~h~~~v~--~~~~s~~~~~l~s~~~d~~v~--vw 684 (1249)
T 3sfz_A 628 QRIASCGAD-------------------KTLQVFKAETGEKLLDIKAHEDEVL--CCAFSSDDSYIATCSADKKVK--IW 684 (1249)
T ss_dssp SEEEEEETT-------------------SCEEEEETTTCCEEEEECCCSSCEE--EEEECTTSSEEEEEETTSEEE--EE
T ss_pred CEEEEEeCC-------------------CeEEEEECCCCCEEEEeccCCCCEE--EEEEecCCCEEEEEeCCCeEE--EE
Confidence 677888877 9999999999999999999999988 9999999 7899999 99
Q ss_pred cCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCcccceeccCCCceEeeeccccCCCCc
Q 003871 352 PTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSREST--SLPDADSAVCAKSLEKSVNLKLQLINEPSE 429 (790)
Q Consensus 352 d~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~d--g~~la~~~at~s~d~~i~iwd~~~~~~~~~ 429 (790)
|..+|+++ ..+.+|...| ++++|+ |+ +..+ ++|+.|+.|++||+.. +.
T Consensus 685 d~~~~~~~--------~~~~~~~~~v-------~~~~~~-------~~~~~~~l----~sg~~d~~v~vwd~~~----~~ 734 (1249)
T 3sfz_A 685 DSATGKLV--------HTYDEHSEQV-------NCCHFT-------NKSNHLLL----ATGSNDFFLKLWDLNQ----KE 734 (1249)
T ss_dssp ETTTCCEE--------EEEECCSSCE-------EEEEEC-------SSSSCCEE----EEEETTSCEEEEETTS----SS
T ss_pred ECCCCceE--------EEEcCCCCcE-------EEEEEe-------cCCCceEE----EEEeCCCeEEEEECCC----cc
Confidence 99999987 8889999999 999998 74 4466 9999999999999973 44
Q ss_pred eeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc------------------------------ccc
Q 003871 430 CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS------------------------------LEE 479 (790)
Q Consensus 430 ~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~------------------------------~g~ 479 (790)
+.... .+|.+.|.+++|+|+|+++++++.||.|++||+.++... .|.
T Consensus 735 ~~~~~---~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 811 (1249)
T 3sfz_A 735 CRNTM---FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD 811 (1249)
T ss_dssp EEEEE---CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS
T ss_pred hhhee---cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCC
Confidence 44322 379999999999999999999999999999999765430 000
Q ss_pred cc---cccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEE
Q 003871 480 EN---VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 553 (790)
Q Consensus 480 ~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~ 553 (790)
.. ......+|+..++....... .+|...|.+++|+ +.++++++ +|.|++||+.++..+..+.+|...|.+++|
T Consensus 812 ~l~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 890 (1249)
T 3sfz_A 812 KIIVAAKNKVLLFDIHTSGLLAEIH-TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF 890 (1249)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEE-CSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEEEEcCCcEEEEEecCCCceeEEc-CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEE
Confidence 00 01123678877777554432 3689999999999 88999988 899999999999999999999999999999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCC----------------------------------------------------------
Q 003871 554 LPQD-LFAFGFDDSSILVHCPC---------------------------------------------------------- 574 (790)
Q Consensus 554 s~~g-~l~sgs~dg~I~iwd~~---------------------------------------------------------- 574 (790)
+|+| .+++++.||.|++||+.
T Consensus 891 spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 970 (1249)
T 3sfz_A 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS 970 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc
Confidence 9999 99999999988888743
Q ss_pred ---------------------CCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCC
Q 003871 575 ---------------------TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 633 (790)
Q Consensus 575 ---------------------~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 633 (790)
+++....+.+|...|++++|+|+|+++++++.|+.|++||+.+++.. . ..+|
T Consensus 971 p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-----~--~~~~ 1043 (1249)
T 3sfz_A 971 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-----F--LQAH 1043 (1249)
T ss_dssp TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-----C--CBCC
T ss_pred CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-----E--EecC
Confidence 23344456678999999999999999999999999999999986532 1 2244
Q ss_pred CCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003871 634 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 634 ~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~ 713 (790)
. ..+.+++|+|++.+++.+.|+.|++||+.+++.+..+.. |...|.+++|+|+++++++++.||.|++||+.+++
T Consensus 1044 ~---~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A 1044 Q---ETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC--HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1118 (1249)
T ss_dssp S---SCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC--CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS
T ss_pred C---CcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc--cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc
Confidence 4 689999999988776668999999999999999888865 68899999999999999999999999999999998
Q ss_pred EEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccccc
Q 003871 714 LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 770 (790)
Q Consensus 714 ~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~ 770 (790)
.+..+. +| ...|. +++|+| ++++||+|+.||.|++|++.+++....
T Consensus 1119 ~~~~l~-------~h-~~~v~--~~~~s~-dg~~lat~~~dg~i~vwd~~~~~~~~~ 1164 (1249)
T 3sfz_A 1119 PLHELK-------GH-NGCVR--CSAFSL-DGILLATGDDNGEIRIWNVSDGQLLHS 1164 (1249)
T ss_dssp CSBCCC-------CC-SSCEE--EEEECS-SSSEEEEEETTSCCCEEESSSSCCCCC
T ss_pred eeeeec-------cC-CCcEE--EEEECC-CCCEEEEEeCCCEEEEEECCCCceEEE
Confidence 766654 55 44666 999999 899999999999999999999886644
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-42 Score=410.89 Aligned_cols=416 Identities=8% Similarity=0.004 Sum_probs=296.7
Q ss_pred CCcccccccccchhhhhchhhhhcCccccccccCccccchhhhhhhhccCCCccccccccCCC------CCCCcceeeec
Q 003871 278 QQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDF 351 (790)
Q Consensus 278 ~~~l~s~~~d~v~l~~~~~~~~~~~~~la~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd------~~d~~i~l~iw 351 (790)
++++|+++.| |+|+|||..+++....+. |...|. +++|+|+ +.|++|+ +|
T Consensus 29 g~~lAsgs~D-------------------g~I~lw~~~~~~~~~~~~-~~~~V~--~l~fspg~~L~S~s~D~~v~--lW 84 (902)
T 2oaj_A 29 QNLLAIATVT-------------------GEVHIYGQQQVEVVIKLE-DRSAIK--EMRFVKGIYLVVINAKDTVY--VL 84 (902)
T ss_dssp TTEEEEEETT-------------------SEEEEECSTTCEEEEECS-SCCCEE--EEEEETTTEEEEEETTCEEE--EE
T ss_pred CCEEEEEeCC-------------------CEEEEEeCCCcEEEEEcC-CCCCEE--EEEEcCCCEEEEEECcCeEE--EE
Confidence 3788999999 888888887776655543 566666 9999998 7899999 99
Q ss_pred cCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCcee
Q 003871 352 PTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECR 431 (790)
Q Consensus 352 d~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~ 431 (790)
|+.+++++ ..+. |.+.| ++++|+ |+++++ ++|+.||+|++||+.. ..+.
T Consensus 85 d~~~~~~~--------~~~~-~~~~V-------~~v~~s-------p~g~~l----~sgs~dg~V~lwd~~~----~~~~ 133 (902)
T 2oaj_A 85 SLYSQKVL--------TTVF-VPGKI-------TSIDTD-------ASLDWM----LIGLQNGSMIVYDIDR----DQLS 133 (902)
T ss_dssp ETTTCSEE--------EEEE-CSSCE-------EEEECC-------TTCSEE----EEEETTSCEEEEETTT----TEEE
T ss_pred ECCCCcEE--------EEEc-CCCCE-------EEEEEC-------CCCCEE----EEEcCCCcEEEEECCC----Cccc
Confidence 99999886 5554 66778 999999 999999 9999999999999973 3332
Q ss_pred eeec--------cCCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEecCCCCccccccccccccccc-cCCCceeeeecc
Q 003871 432 TLLL--------PDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLY-QPSSKLVMTNDI 501 (790)
Q Consensus 432 ~~~l--------~~~~h~~~V~~l~~spd-g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~-~~~~~~~~~~~~ 501 (790)
.+.+ ...+|.+.|.+++|+|+ +..+++++.|+.| +||+.++... ..+....- ....+.... ..
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~-----~~~~~~~~~g~~~~~~~~-~~ 206 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIK-----QSFIYELPPFAPGGDFSE-KT 206 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEE-----EEECCCBCTTCCCSTTCC-CT
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceE-----EEEecccCCcCCCccccc-cc
Confidence 2111 12479999999999996 5789999999999 9999875430 00000000 000000000 01
Q ss_pred cCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEE--Ec---C-------------CCCCeEEEEEc----CC
Q 003871 502 AADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT--FA---N-------------PPPIATYFILL----PQ 556 (790)
Q Consensus 502 ~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~--~~---~-------------~~~~v~~l~~s----~~ 556 (790)
..+|...|.+++|+ |.+|++++ ||.|++||+.+++++.. +. . +...|.+++|+ |+
T Consensus 207 ~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd 286 (902)
T 2oaj_A 207 NEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPE 286 (902)
T ss_dssp TSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTT
T ss_pred ccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCC
Confidence 12467889999999 88999999 99999999999887654 21 1 23468899984 55
Q ss_pred C--eEEEEeCC---------------------------------------------------------------------
Q 003871 557 D--LFAFGFDD--------------------------------------------------------------------- 565 (790)
Q Consensus 557 g--~l~sgs~d--------------------------------------------------------------------- 565 (790)
+ .+++|+.|
T Consensus 287 ~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~ 366 (902)
T 2oaj_A 287 YTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGL 366 (902)
T ss_dssp EEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSE
T ss_pred CCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCcee
Confidence 4 56666443
Q ss_pred -------CcEEEEeCCCCceEEE-------EcCCCCCEEE----------------------------------EEEeCC
Q 003871 566 -------SSILVHCPCTKKTKAK-------LKGHQNRITC----------------------------------LAYSLS 597 (790)
Q Consensus 566 -------g~I~iwd~~~~~~~~~-------l~~h~~~v~~----------------------------------l~~spd 597 (790)
|.|++||+.+|..... +..|...|++ ++|+|+
T Consensus 367 l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd 446 (902)
T 2oaj_A 367 ILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY 446 (902)
T ss_dssp EEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE
T ss_pred EEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc
Confidence 3344444433321111 1122233444 455789
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeceeeee-----eccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCc--
Q 003871 598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN-- 669 (790)
Q Consensus 598 g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~-----~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~-- 669 (790)
+++|++|+.|++|++||+.++.......+.. +..+|. ..|++++|+|+|++||++ .||+|++||+.+++
T Consensus 447 g~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~---~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~ 523 (902)
T 2oaj_A 447 GTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE---LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFY 523 (902)
T ss_dssp EEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS---CCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-
T ss_pred CcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCC---CceeEEEecCCCCeEEEEecCcEEEEEEecCcccc
Confidence 9999999999999999999864321111110 112555 689999999999999995 89999999997663
Q ss_pred -------------------------------------------eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 003871 670 -------------------------------------------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 706 (790)
Q Consensus 670 -------------------------------------------~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~v 706 (790)
++..+. .|...|++++||||| +||+|+.|++|++
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~--~h~~~V~svafSpdG-~lAsgs~D~tv~l 600 (902)
T 2oaj_A 524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH--ANKGKTSAINNSNIG-FVGIAYAAGSLML 600 (902)
T ss_dssp --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC--CCSCSEEEEEECBTS-EEEEEETTSEEEE
T ss_pred CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE--cCCCcEEEEEecCCc-EEEEEeCCCcEEE
Confidence 244443 378999999999999 9999999999999
Q ss_pred EECCCCeEEEEeccccccCCCCcccccceEEEEEe-----cCCC---CEEEEEeCCCcEEEEec---CCCc
Q 003871 707 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH-----PLEP---NRIALGLTNGRVHVIEP---LESE 766 (790)
Q Consensus 707 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~s-----p~d~---~~las~s~Dg~i~iW~~---~~~~ 766 (790)
||++++..+.......+ ..|| ...|+ +++|+ | || .+|++|+.||+|++|++ .+|+
T Consensus 601 wd~~~~~~~~~~~~~~~-~~gh-~~~V~--sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 601 IDRRGPAIIYMENIREI-SGAQ-SACVT--CIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp EETTTTEEEEEEEGGGT-CSSC-CCCEE--EEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred EECCCCeEEEEeehhHh-cccc-ccceE--EEEEEEEecCC-CCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 99998887653221111 0155 44566 99999 8 64 89999999999999999 5554
No 8
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.8e-40 Score=347.81 Aligned_cols=283 Identities=17% Similarity=0.215 Sum_probs=249.2
Q ss_pred CCCCCceEEEEEcCC----CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEE
Q 003871 438 NSFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 513 (790)
Q Consensus 438 ~~h~~~V~~l~~spd----g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~ 513 (790)
.+|.+.|++++|+|+ +.+|++|+.|++|++|++..... .......+|...|.+++
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---------------------~~~~~l~gh~~~v~~~~ 87 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---------------------DLQWSLEGHQLGVVSVD 87 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCSSCEEEEE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---------------------eeeeeeccCCCCEEEEE
Confidence 479999999999985 67899999999999999865321 11111247999999999
Q ss_pred ec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCE
Q 003871 514 LR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 589 (790)
Q Consensus 514 ~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v 589 (790)
|+ +.++++++ |++|++||+.+++.+..+..+...+.+++|+|++ ++++|+.||.|++||+.+++....+..|...|
T Consensus 88 ~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v 167 (321)
T 3ow8_A 88 ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI 167 (321)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCE
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceE
Confidence 99 88999999 9999999999999999999999999999999999 99999999999999999999998999999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCC
Q 003871 590 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL 668 (790)
Q Consensus 590 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~ 668 (790)
.+++|+|++++|++|+.|+.|++||+++++ .+. ...+|. .+|.+++|+|++++|+++ .|+.|++||++++
T Consensus 168 ~~~~~spdg~~lasg~~dg~i~iwd~~~~~-----~~~-~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 168 LSIAYSPDGKYLASGAIDGIINIFDIATGK-----LLH-TLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEE-EECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCc-----EEE-EEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence 999999999999999999999999999854 333 233555 689999999999999996 8999999999999
Q ss_pred ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEE
Q 003871 669 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 748 (790)
Q Consensus 669 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l 748 (790)
+....+.+ |...|.+++|+|++++|++|+.|++|++||+.+++.+..+. +| ...|+ +++|+| ++.+|
T Consensus 239 ~~~~~~~~--h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-------~h-~~~v~--~v~~s~-~g~~l 305 (321)
T 3ow8_A 239 NLAGTLSG--HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-------DH-QDQVW--GVKYNG-NGSKI 305 (321)
T ss_dssp CEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------CC-SSCEE--EEEECT-TSSEE
T ss_pred ceeEEEcC--CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc-------CC-CCcEE--EEEECC-CCCEE
Confidence 98888864 78999999999999999999999999999999999988876 44 44666 999999 89999
Q ss_pred EEEeCCCcEEEEecC
Q 003871 749 ALGLTNGRVHVIEPL 763 (790)
Q Consensus 749 as~s~Dg~i~iW~~~ 763 (790)
++++.||+|++||..
T Consensus 306 ~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 306 VSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEETTCCEEEEECC
T ss_pred EEEeCCCeEEEEeCC
Confidence 999999999999963
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.9e-40 Score=353.94 Aligned_cols=291 Identities=13% Similarity=0.148 Sum_probs=252.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
.++.+|.+.| ++++|+ |||+++ ++|+.|++|++||+.. ......+. .|...|.++
T Consensus 49 ~~l~gH~~~v-------~~~~~s-------~d~~~l----~s~s~Dg~v~iWd~~~---~~~~~~~~----~~~~~v~~~ 103 (340)
T 1got_B 49 RTLRGHLAKI-------YAMHWG-------TDSRLL----LSASQDGKLIIWDSYT---TNKVHAIP----LRSSWVMTC 103 (340)
T ss_dssp EEECCCSSCE-------EEEEEC-------TTSSEE----EEEETTTEEEEEETTT---CCEEEEEE----CSSSCEEEE
T ss_pred eeecCCCCce-------EEEEEC-------CCCCEE----EEEeCCCcEEEEECCC---CCcceEee----cCCccEEEE
Confidence 6788999999 999999 999999 9999999999999974 33334433 588999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecCCeE
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKI 527 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I 527 (790)
+|+|+|+++++++.|+.+++|++.+...
T Consensus 104 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~---------------------------------------------------- 131 (340)
T 1got_B 104 AYAPSGNYVACGGLDNICSIYNLKTREG---------------------------------------------------- 131 (340)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTCSB----------------------------------------------------
T ss_pred EECCCCCEEEEEeCCCeEEEEECccCCC----------------------------------------------------
Confidence 9999999999999999999999765211
Q ss_pred EEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Q 003871 528 SIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD 607 (790)
Q Consensus 528 ~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d 607 (790)
..+....+.+|...|.++.|++++.+++|+.|++|++||+.+++.+..+.+|.+.|.+++|+|+++++++|+.|
T Consensus 132 ------~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d 205 (340)
T 1got_B 132 ------NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp ------SCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ------cceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence 01234556788999999999988888899999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEE
Q 003871 608 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYA 686 (790)
Q Consensus 608 g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l 686 (790)
++|++||++++.. +. ...+|. ..|++++|+|++.+|+++ .|+.|++||+++++.+..+....+...|.++
T Consensus 206 ~~v~~wd~~~~~~-----~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 206 ASAKLWDVREGMC-----RQ-TFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp SCEEEEETTTCSE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred CcEEEEECCCCee-----EE-EEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 9999999998542 33 234555 689999999999999995 8999999999998888777544445689999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEe
Q 003871 687 TYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 761 (790)
Q Consensus 687 ~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~ 761 (790)
+|+|+|++|++|+.||.|++||+.+++....+. || ...|. +++|+| ++.+||+|+.||+|+||+
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~-------~h-~~~v~--~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-------GH-DNRVS--CLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------CC-SSCEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccCcEeeEee-------cC-CCcEE--EEEEcC-CCCEEEEEcCCccEEecC
Confidence 999999999999999999999999999888876 55 44666 999999 899999999999999996
No 10
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-40 Score=385.61 Aligned_cols=389 Identities=10% Similarity=0.032 Sum_probs=308.1
Q ss_pred CCcccccccccchhhhhchhhhhcCccccccccCccccch--------hhhhhhhccCCCccccccccCCC-------CC
Q 003871 278 QQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKS--------RLLSLIKQIMDWWVPYCINVMPN-------AN 342 (790)
Q Consensus 278 ~~~l~s~~~d~v~l~~~~~~~~~~~~~la~~i~iwd~~~~--------~~~~~l~~h~~~v~v~~i~fspd-------~~ 342 (790)
++++++++.| |.|++||+.++ +....+..|...+. +++|+|+ +.
T Consensus 78 ~~~l~s~~~d-------------------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~~~~l~~~~~ 136 (615)
T 1pgu_A 78 SQYLCSGDES-------------------GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS--DISWDFEGRRLCVVGE 136 (615)
T ss_dssp CCEEEEEETT-------------------SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE--EEEECTTSSEEEEEEC
T ss_pred CCEEEEecCC-------------------CEEEEEeCCCCcccccccccccchhhcccccEE--EEEEeCCCCEEEEecc
Confidence 4678888888 88888888754 66777888988877 9999999 22
Q ss_pred C----CcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCcccceeccCCCceE
Q 003871 343 N----ETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSL-PDADSAVCAKSLEKSV 417 (790)
Q Consensus 343 d----~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~-~la~~~at~s~d~~i~ 417 (790)
+ +.|. +|| +++.+ ..+.+|...| ++++|+ |+++ .+ ++++.|+.|+
T Consensus 137 ~~~~~~~v~--~~d--~~~~~--------~~~~~~~~~v-------~~~~~~-------~~~~~~l----~~~~~d~~v~ 186 (615)
T 1pgu_A 137 GRDNFGVFI--SWD--SGNSL--------GEVSGHSQRI-------NACHLK-------QSRPMRS----MTVGDDGSVV 186 (615)
T ss_dssp CSSCSEEEE--ETT--TCCEE--------EECCSCSSCE-------EEEEEC-------SSSSCEE----EEEETTTEEE
T ss_pred CCCCccEEE--EEE--CCCcc--------eeeecCCccE-------EEEEEC-------CCCCcEE----EEEeCCCcEE
Confidence 3 4555 999 56665 7788999999 999999 9998 57 9999999999
Q ss_pred eeeccccCCCCceeeeeccCCCCCC---ceEEEEEcCC-CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCC
Q 003871 418 NLKLQLINEPSECRTLLLPDNSFGG---RVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 493 (790)
Q Consensus 418 iwd~~~~~~~~~~~~~~l~~~~h~~---~V~~l~~spd-g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~ 493 (790)
+||+.. ..+... + .+|.. .|.+++|+|+ ++++++++.|+.|++||+.++..
T Consensus 187 vwd~~~----~~~~~~-~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------------ 241 (615)
T 1pgu_A 187 FYQGPP----FKFSAS-D--RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF------------------ 241 (615)
T ss_dssp EEETTT----BEEEEE-E--CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE------------------
T ss_pred EEeCCC----cceeee-e--cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE------------------
Confidence 999863 433332 2 25888 9999999999 99999999999999999876433
Q ss_pred ceeeeecccC---CCCCCeEEEEec-CcEEEEec-CCeEEEEECCCCcEEEEEcCC----CCCeEEEEEcCCC-eEEEEe
Q 003871 494 KLVMTNDIAA---DPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGF 563 (790)
Q Consensus 494 ~~~~~~~~~~---~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~----~~~v~~l~~s~~g-~l~sgs 563 (790)
... +.. .|...|.+++|+ ++++++++ |+.|++||+.+++.+..+..+ ...+.++.|. ++ .+++|+
T Consensus 242 ---~~~-~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 316 (615)
T 1pgu_A 242 ---LKY-IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLS 316 (615)
T ss_dssp ---EEE-CCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEE
T ss_pred ---eEE-ecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEE
Confidence 111 112 589999999998 88999998 999999999999999988866 3567888886 67 999999
Q ss_pred CCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCC---------------------------------CCEEEEEeCCCcE
Q 003871 564 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS---------------------------------LNVLVSSGADAQL 610 (790)
Q Consensus 564 ~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd---------------------------------g~~l~s~s~dg~I 610 (790)
.||.|++||+.+++.+..+.+|...|++++| |+ ++.+++++.|+.|
T Consensus 317 ~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i 395 (615)
T 1pgu_A 317 LDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTL 395 (615)
T ss_dssp TTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEE
T ss_pred CCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCE
Confidence 9999999999988888888777776666666 44 4555666666666
Q ss_pred EEEECCCCce----------------------------------ee------------------------ce--------
Q 003871 611 CVWDAVGWKK----------------------------------LC------------------------SK-------- 624 (790)
Q Consensus 611 ~vwd~~~~~~----------------------------------~~------------------------~~-------- 624 (790)
++||+.+++. .. ..
T Consensus 396 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~ 475 (615)
T 1pgu_A 396 KVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS 475 (615)
T ss_dssp EETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETT
T ss_pred EEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECC
Confidence 5555432110 00 00
Q ss_pred --eee-eeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEec----------
Q 003871 625 --FLH-SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC---------- 690 (790)
Q Consensus 625 --~l~-~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~---------- 690 (790)
.+. ....+|. ..|++++|+|++++|+++ .|+.|++||+.+++.+..+.. .|...|++++|+|
T Consensus 476 ~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~~~ 551 (615)
T 1pgu_A 476 DLEVSFDLKTPLR---AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA-FRTSKINAISWKPAEKGANEEEI 551 (615)
T ss_dssp EEEEEEECSSCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC-CCSSCEEEEEECCCC------CC
T ss_pred CccccccccCCcc---CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec-CCCCceeEEEEcCcccccccccc
Confidence 000 1222344 789999999999999995 899999999999999887753 2689999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-eEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 691 DGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 691 dg~~l~sgs~dg~i~vwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
++++|++|+.||.|++||+.++ +.+..+. +| ...|. +++|+| ++. |++++.||.|++|++..
T Consensus 552 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------~h-~~~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 552 EEDLVATGSLDTNIFIYSVKRPMKIIKALN-------AH-KDGVN--NLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp SCCEEEEEETTSCEEEEESSCTTCCEEETT-------SS-TTCEE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred CCCEEEEEcCCCcEEEEECCCCceechhhh-------cC-ccceE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 9999999999999999999998 6666654 55 45666 999999 888 99999999999999875
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.6e-42 Score=431.73 Aligned_cols=429 Identities=16% Similarity=0.124 Sum_probs=346.1
Q ss_pred Ccccccccc-cchhhhh-chhhh-------------hcC-----cccc-----ccccCccccchhhhhhhhccCCCcccc
Q 003871 279 QKLPSDFAE-RAHLFDD-FKVLV-------------ERN-----PMLQ-----DKLKFPSMDKSRLLSLIKQIMDWWVPY 333 (790)
Q Consensus 279 ~~l~s~~~d-~v~l~~~-~~~~~-------------~~~-----~~la-----~~i~iwd~~~~~~~~~l~~h~~~v~v~ 333 (790)
+++++++.| ++.+||. +++.+ .++ .+++ +.|++||+.+++.+..+.+|.+.+.
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~-- 747 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN-- 747 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEE--
T ss_pred CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEE--
Confidence 789999999 9999994 44321 121 3454 8899999999999999999999988
Q ss_pred ccccCCC-------CCCCcceeeeccCCCcccccccccCCCC--------------------------------------
Q 003871 334 CINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKP-------------------------------------- 368 (790)
Q Consensus 334 ~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~-------------------------------------- 368 (790)
+++|+|+ +.|++|+ +||..+++... . +....
T Consensus 748 ~~~~sp~~~~l~s~s~dg~v~--vwd~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~ 823 (1249)
T 3sfz_A 748 HCRFSPDDELLASCSADGTLR--LWDVRSANERK-S-INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL 823 (1249)
T ss_dssp EEEECSSTTEEEEEESSSEEE--EEEGGGTEEEE-E-EECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEE
T ss_pred EEEEecCCCEEEEEECCCeEE--EEeCCCCcccc-e-ecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEE
Confidence 9999999 7899999 99988775431 0 00000
Q ss_pred -----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccC
Q 003871 369 -----------NQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD 437 (790)
Q Consensus 369 -----------~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~ 437 (790)
...+|...+ .+++|+ |+|+.+ ++++.|+.|++||+.. +..... +
T Consensus 824 ~d~~~~~~~~~~~~~~~~~v-------~~~~~s-------p~~~~l----~~~~~dg~v~vwd~~~----~~~~~~-~-- 878 (1249)
T 3sfz_A 824 FDIHTSGLLAEIHTGHHSTI-------QYCDFS-------PYDHLA----VIALSQYCVELWNIDS----RLKVAD-C-- 878 (1249)
T ss_dssp EETTTCCEEEEEECSSSSCC-------CEEEEC-------SSTTEE----EEECSSSCEEEEETTT----TEEEEE-E--
T ss_pred EEecCCCceeEEcCCCCCce-------EEEEEc-------CCCCEE----EEEeCCCeEEEEEcCC----Cceeee-c--
Confidence 011555565 788887 899999 9999999999999973 333322 2
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc------------------------------------------
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ------------------------------------------ 475 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~------------------------------------------ 475 (790)
.+|...|.+++|+|+|+++++++.||.+++|++.+...
T Consensus 879 ~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY 958 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE
T ss_pred CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE
Confidence 37999999999999999999999999999999753110
Q ss_pred ------------cccccc----cccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCc
Q 003871 476 ------------SLEEEN----VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ 536 (790)
Q Consensus 476 ------------~~g~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~ 536 (790)
+.|... ......+|+..++...... .+|...|.+++|+ ++++++++ ||.|++||+.+++
T Consensus 959 ~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG--VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC--CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec--ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 001100 1123478888887765543 3799999999999 88999998 9999999999987
Q ss_pred EEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 003871 537 TLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616 (790)
Q Consensus 537 ~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 616 (790)
... +..|...|.+++|+|++.+++++.||.|++||+.+++....+.+|.+.|.+++|+|+++++++++.|++|++||+.
T Consensus 1037 ~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1037 YVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115 (1249)
T ss_dssp EEC-CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSS
T ss_pred eEE-EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 764 4578999999999997788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecC-------CCCCCCeEEEEE
Q 003871 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVP-------DKMDLPITYATY 688 (790)
Q Consensus 617 ~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~-------~~h~~~v~~l~~ 688 (790)
+++. +. ...+|. +.|++++|+|+|++|+++ .||.|++||+.+++.+..+.. ..|...|++++|
T Consensus 1116 ~~~~-----~~-~l~~h~---~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f 1186 (1249)
T 3sfz_A 1116 LLSP-----LH-ELKGHN---GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1186 (1249)
T ss_dssp SSSC-----SB-CCCCCS---SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEE
T ss_pred Ccce-----ee-eeccCC---CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEE
Confidence 8542 33 233555 689999999999999995 899999999999887766511 236889999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 689 SCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 689 s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
+|||++|++++ |.|++||+.+++.+..+. +| ...+. +++|+| ++.+|++++.||.|++|++.
T Consensus 1187 s~dg~~l~s~~--g~v~vwd~~~g~~~~~~~-------~~-~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1187 SPDSKTLVSAG--GYLKWWNVATGDSSQTFY-------TN-GTNLK--KIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp CTTSSCEEEES--SSEEEBCSSSCBCCCCCC-------CS-SCCCC--CCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred CCCCCEEEECC--CeEEEEECCCCceeeeee-------cc-CCccc--EEEECC-CCCEEEEecCCcEEEEEeec
Confidence 99999999885 899999999998776654 33 44666 899999 89999999999999999975
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.1e-40 Score=352.73 Aligned_cols=309 Identities=14% Similarity=0.151 Sum_probs=228.6
Q ss_pred eeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC------CCcEEEEecCCCCccccccc
Q 003871 408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ------TATHKLWKWQSNKQSLEEEN 481 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~------dg~i~vw~~~~~~~~~g~~~ 481 (790)
+.++.+.....|++.. ... .+|...|.+++|||||++|++++. |+.+++|+..++..
T Consensus 20 ~~~~g~~~~~~w~~p~----~~p-------~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~------ 82 (357)
T 4g56_B 20 FQSNGSSKGSAWGRPV----TAP-------ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP------ 82 (357)
T ss_dssp -------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---------
T ss_pred EecCCCccccccCCCC----CCc-------ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc------
Confidence 3445567788998852 111 259999999999999999999998 56777777654322
Q ss_pred cccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEec-CCeEEEEECCCCcEEE----EEcCCCCCeEEEEEcC
Q 003871 482 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLA----TFANPPPIATYFILLP 555 (790)
Q Consensus 482 ~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~~~~----~~~~~~~~v~~l~~s~ 555 (790)
...... ...+|...|.+++|+ .+.+++++ ||+|++||+.+++... ...+|...|++++|+|
T Consensus 83 -----------~~~~~~--~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 149 (357)
T 4g56_B 83 -----------NESLCT--AGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS 149 (357)
T ss_dssp -----------CGGGCS--EEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS
T ss_pred -----------ceeEec--ccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC
Confidence 000000 011588899999999 55555555 9999999998876543 3347899999999999
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeceeeeeeccCC
Q 003871 556 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 633 (790)
Q Consensus 556 ~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 633 (790)
++ +|++|+.|++|++||+.+++.+..+.+|...|++++|+|++. ++++++.|++|++||+++++...... ...+
T Consensus 150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~----~~~~ 225 (357)
T 4g56_B 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID----FCAS 225 (357)
T ss_dssp SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC----CTTC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee----eccc
Confidence 99 999999999999999999999999999999999999999875 78999999999999999865332111 1123
Q ss_pred CCCCCCeEEEEEeCCC-CEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECC
Q 003871 634 VPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 634 ~~~~~~v~~i~~sp~~-~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~dg~i~vwd~~ 710 (790)
. ..+.+++|+|++ .+|+++ .|+.|++||+++++++..+.. |...|++++|+|++ ++|++|+.|++|+|||+.
T Consensus 226 ~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~ 300 (357)
T 4g56_B 226 D---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV--HSQNITGLAYSYHSSPFLASISEDCTVAVLDAD 300 (357)
T ss_dssp C---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC--CSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred c---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec--cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECC
Confidence 3 579999999985 577775 899999999999999888864 68899999999987 589999999999999999
Q ss_pred CCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 711 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 711 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
+++++..+ +| .+.|+ +++|+|.++.+|||||.||+|++|++.+..
T Consensus 301 ~~~~~~~~--------~H-~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 301 FSEVFRDL--------SH-RDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp SCEEEEEC--------CC-SSCEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCcEeEEC--------CC-CCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 99877654 55 45676 999999779999999999999999997643
No 13
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-39 Score=342.15 Aligned_cols=289 Identities=18% Similarity=0.197 Sum_probs=248.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCce-eeeeccCCCCCCceEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVR 446 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~-~~~~l~~~~h~~~V~~ 446 (790)
+.+.+|.+.| ++++|+ ++ ..++++.+ +||+.|++|++|++.. ... ....+ .+|...|.+
T Consensus 26 ~~~~~H~~~V-------~~v~~~-~~--~~~~~~~l----~tgs~D~~v~vW~~~~----~~~~~~~~l--~gh~~~v~~ 85 (321)
T 3ow8_A 26 KQEQAHDDAI-------WSVAWG-TN--KKENSETV----VTGSLDDLVKVWKWRD----ERLDLQWSL--EGHQLGVVS 85 (321)
T ss_dssp EETTSSSSCE-------EEEEEC----------CEE----EEEETTSCEEEEEEET----TEEEEEEEE--CCCSSCEEE
T ss_pred eecccCCCcE-------EEEEEe-cC--CCCCCCEE----EEEcCCCCEEEEECCC----CCeeeeeee--ccCCCCEEE
Confidence 6678999999 999998 10 00246678 9999999999999963 222 22223 479999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-
Q 003871 447 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS- 523 (790)
Q Consensus 447 l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s- 523 (790)
++|+|++.++++++.|++|++||+.++.. .... ..+...+.+++|+ +++|++++
T Consensus 86 ~~~~~~~~~l~s~s~D~~i~lWd~~~~~~---------------------~~~~--~~~~~~~~~~~~spdg~~l~~g~~ 142 (321)
T 3ow8_A 86 VDISHTLPIAASSSLDAHIRLWDLENGKQ---------------------IKSI--DAGPVDAWTLAFSPDSQYLATGTH 142 (321)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEE---------------------EEEE--ECCTTCCCCEEECTTSSEEEEECT
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCCE---------------------EEEE--eCCCccEEEEEECCCCCEEEEEcC
Confidence 99999999999999999999999876433 1111 1477788999999 89999999
Q ss_pred CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEE
Q 003871 524 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV 602 (790)
Q Consensus 524 dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~ 602 (790)
+|.|++|++.+++....+..+...|.+++|+|+| +|++|+.||.|++||+.+++.+..+.+|..+|++++|+|++++|+
T Consensus 143 dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~ 222 (321)
T 3ow8_A 143 VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLV 222 (321)
T ss_dssp TSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEE
T ss_pred CCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEE
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCC
Q 003871 603 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDL 681 (790)
Q Consensus 603 s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~ 681 (790)
+|+.|++|++||+++++. +. ...+|. ..|.+++|+|++++|+++ .|+.|++||+.+++++.++.. |..
T Consensus 223 s~s~dg~i~iwd~~~~~~-----~~-~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--h~~ 291 (321)
T 3ow8_A 223 TASDDGYIKIYDVQHANL-----AG-TLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD--HQD 291 (321)
T ss_dssp EECTTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--CSS
T ss_pred EEcCCCeEEEEECCCcce-----eE-EEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC--CCC
Confidence 999999999999998542 23 334566 689999999999999985 899999999999999998864 789
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 003871 682 PITYATYSCDGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 682 ~v~~l~~s~dg~~l~sgs~dg~i~vwd~~ 710 (790)
.|.+++|+|++++|++++.||.|++||..
T Consensus 292 ~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 292 QVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999964
No 14
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.4e-40 Score=358.33 Aligned_cols=313 Identities=12% Similarity=0.099 Sum_probs=256.3
Q ss_pred eccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCc
Q 003871 350 DFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE 429 (790)
Q Consensus 350 iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~ 429 (790)
.|+..+..+. +++.||.+.| ++++|+ |||+++ +||+.|++|+|||+.. ...
T Consensus 50 ~~~~~~~~~~--------~~l~gH~~~V-------~~~~~s-------p~~~~l----~s~s~D~~v~iWd~~~---~~~ 100 (380)
T 3iz6_a 50 SFNPTDLVCC--------RTLQGHSGKV-------YSLDWT-------PEKNWI----VSASQDGRLIVWNALT---SQK 100 (380)
T ss_dssp CCCCCCCEEE--------EEECCCSSCE-------EEEEEC-------TTSSCE----EEEETTSEEEEEETTT---TEE
T ss_pred ccccceeEEe--------ecccccccEE-------EEEEEc-------CCCCEE----EEEeCCCeEEEEECCC---Ccc
Confidence 6777777676 8899999999 999999 999999 9999999999999973 233
Q ss_pred eeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCe
Q 003871 430 CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI 509 (790)
Q Consensus 430 ~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V 509 (790)
...+. +|...|.+++|+|+|++|++++.|+.+++|++.+.....+ .........+|...|
T Consensus 101 ~~~~~----~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~gh~~~v 160 (380)
T 3iz6_a 101 THAIK----LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG----------------NMPVSRVLTGHKGYA 160 (380)
T ss_dssp EEEEE----CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC----------------SSTTCCBCCCCSSCC
T ss_pred ceEEe----cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC----------------CccceeeccCCCcce
Confidence 33333 5899999999999999999999999999999875432000 000001123799999
Q ss_pred EEEEec---CcEEEEec-CCeEEEEECCCCcEEEEE-----cCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCC-CCc
Q 003871 510 SCFALR---GSHLFSAS-GGKISIFSLETFQTLATF-----ANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPC-TKK 577 (790)
Q Consensus 510 ~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~-----~~~~~~v~~l~~s~-~g-~l~sgs~dg~I~iwd~~-~~~ 577 (790)
.++.|. +..|++|+ |++|++||+.+++.+..+ .+|...|.+++|++ ++ .+++|+.|++|++||++ .++
T Consensus 161 ~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~ 240 (380)
T 3iz6_a 161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240 (380)
T ss_dssp CCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC
T ss_pred EEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc
Confidence 999998 45788888 999999999999998887 57888999999987 66 99999999999999998 457
Q ss_pred eEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-e
Q 003871 578 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H 656 (790)
Q Consensus 578 ~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~ 656 (790)
.+..+.+|.+.|++++|+|++++|++|+.|++|++||+++++........ ......+...|++++|+|+|++|+++ .
T Consensus 241 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 318 (380)
T 3iz6_a 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE--PDRNDNELPIVTSVAFSISGRLLFAGYS 318 (380)
T ss_dssp CCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC--CSSSCCSSCSCSEEEECSSSSEEEEECT
T ss_pred ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc--ccccccccCceEEEEECCCCCEEEEEEC
Confidence 78889999999999999999999999999999999999986543211111 00000011358999999999999996 8
Q ss_pred CCcEEEEECCCCceeeeecC--CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003871 657 EGQIDVYEAPTLNHTSQLVP--DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 657 dg~I~iwd~~~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~ 713 (790)
||.|++||+.+++.+..+.. ..|...|.+++|+|+|++|++|+.||+|++|++...+
T Consensus 319 dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 319 NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999888776632 3478999999999999999999999999999998654
No 15
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.1e-38 Score=332.58 Aligned_cols=282 Identities=17% Similarity=0.268 Sum_probs=241.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
+|.+.|.+++|+|+|++|++++.||+|++||+.++.. .... ..|..+|.+++|+ +
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~---------------------~~~~--~~~~~~v~~~~~~~~~ 67 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE---------------------VRSI--QVTETPVRAGKFIARK 67 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------EEEE--ECCSSCEEEEEEEGGG
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce---------------------eEEe--eccCCcEEEEEEeCCC
Confidence 6999999999999999999999999999999876432 1111 2588999999999 8
Q ss_pred cEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEEEcCCCCCEEEEE
Q 003871 517 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLA 593 (790)
Q Consensus 517 ~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~v~~l~ 593 (790)
++|++|+ |+.|++||+.+++.+..+.+|...|.+++|+|++ ++++|+.||+|++||++++ .....+.+|...|.+++
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~ 147 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (304)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEE
Confidence 8999999 9999999999999999999999999999999999 9999999999999999887 45577899999999999
Q ss_pred EeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeC--CCCEEEEE-eCCcEEEEECCCCc
Q 003871 594 YSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLSI-HEGQIDVYEAPTLN 669 (790)
Q Consensus 594 ~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp--~~~~l~~~-~dg~I~iwd~~~~~ 669 (790)
|+| ++.+|++|+.|++|++||++++.. ...+..+|. ..+..+.|+| ++.+|+++ .|+.|++||+++++
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~-----~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQE---RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCSSC-----SEEEECCCT---TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCc-----cceeccCCc---CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc
Confidence 999 688999999999999999987432 222334454 5789999987 67888885 89999999999999
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCC-EE
Q 003871 670 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RI 748 (790)
Q Consensus 670 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l 748 (790)
++.++.+ |...|.+++|+|++++|++|+.||+|++||+.+++++..+. +| ...++ +++|+|.++. ++
T Consensus 220 ~~~~~~~--h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-------~~-~~~~~--~~~~~~~~~~~~~ 287 (304)
T 2ynn_A 220 CVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-------VG-LERSW--CIATHPTGRKNYI 287 (304)
T ss_dssp EEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-------CS-SSSEE--EEEECTTCGGGCE
T ss_pred cceeeCC--CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc-------CC-CccEE--EEEECCCCCceEE
Confidence 9998875 78999999999999999999999999999999999988876 33 34566 9999994333 57
Q ss_pred EEEeCCCcEEEEecCC
Q 003871 749 ALGLTNGRVHVIEPLE 764 (790)
Q Consensus 749 as~s~Dg~i~iW~~~~ 764 (790)
|+|+.| .+.+|++.+
T Consensus 288 asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 288 ASGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEEETT-EEEEEECC-
T ss_pred EEecCC-ceEEEEecc
Confidence 777655 578888765
No 16
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=340.17 Aligned_cols=294 Identities=14% Similarity=0.140 Sum_probs=230.1
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-Cc
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS 517 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~ 517 (790)
.|...|.+++|+|||++|++++ |+++++||.......... -....+..... ..+...|.+++|+ ++
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~---------~~~~~~~~~~~---~~~~~~v~~~~~s~d~ 94 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC---------AAPNEGFCSAG---VQTEAGVADLTWVGER 94 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGG---------GTTCGGGCSEE---EEESSCEEEEEEETTT
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecccc---------ccCCcceeeee---eccCCCEEEEEEeCCC
Confidence 4678899999999999888776 778888874321000000 00000111110 0356789999999 77
Q ss_pred EEEEec-CCeEEEEECCCCcEEEE----EcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEE
Q 003871 518 HLFSAS-GGKISIFSLETFQTLAT----FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 591 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~~~~~~~~----~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~ 591 (790)
.+++|+ ||+|++||+.+++.... ..+|...|++++|+|+| +|++|+.|++|++||+.+++.+..+.+|...|++
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 888888 99999999998875543 34899999999999999 9999999999999999999999999999999999
Q ss_pred EEEeCCC-CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC-CCEEEEE-eCCcEEEEECCCC
Q 003871 592 LAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSI-HEGQIDVYEAPTL 668 (790)
Q Consensus 592 l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~-~~~l~~~-~dg~I~iwd~~~~ 668 (790)
++|+|++ .++++|+.|++|++||+++++.... +. ...+. ..+.+++|+|+ +.++++| .|+.|++||++++
T Consensus 175 ~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~--~~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~ 247 (344)
T 4gqb_B 175 VAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IG--CSAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST 247 (344)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC------C---CCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred EEecCCCCCceeeeccccccccccccccceeee--ee--cceee---ccceeeeecCCCCcceEEeccCCcEEEEECCCC
Confidence 9999987 4789999999999999998653321 11 11222 47899999995 5677775 8999999999999
Q ss_pred ceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCE
Q 003871 669 NHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 747 (790)
Q Consensus 669 ~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~ 747 (790)
+++.++.+ |...|++++|+|++ ++|++|+.|++|+|||+.++++.. +. || .+.|+ +++|+|++..+
T Consensus 248 ~~~~~~~~--h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------~H-~~~V~--~v~~sp~~~~l 314 (344)
T 4gqb_B 248 SCVLSSAV--HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------AH-RDFVR--DATWSPLNHSL 314 (344)
T ss_dssp -CCEEEEC--CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------CC-SSCEE--EEEECSSSTTE
T ss_pred cEEEEEcC--CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------CC-CCCEE--EEEEeCCCCeE
Confidence 99998875 78999999999998 589999999999999999998654 22 66 45677 99999944457
Q ss_pred EEEEeCCCcEEEEecCCC
Q 003871 748 IALGLTNGRVHVIEPLES 765 (790)
Q Consensus 748 las~s~Dg~i~iW~~~~~ 765 (790)
|+|||.||+|++|++.+.
T Consensus 315 las~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 315 LTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEETTSCEEEEECCC-
T ss_pred EEEEcCCCeEEEEECCCC
Confidence 889999999999999764
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.7e-38 Score=338.65 Aligned_cols=280 Identities=14% Similarity=0.187 Sum_probs=243.8
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
+|.+.|++++|+|++++|++++.||+|++||..+... .... ..|...|.+++|+ +
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~--------------------~~~~---~~~~~~v~~~~~sp~g 118 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK--------------------EHAV---TMPCTWVMACAYAPSG 118 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------------------EEEE---ECSSSCCCEEEECTTS
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc--------------------ceEE---ecCCCCEEEEEECCCC
Confidence 7999999999999999999999999999999765432 1111 1477889999999 8
Q ss_pred cEEEEec-CCeEEEEECCCC------cEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCC
Q 003871 517 SHLFSAS-GGKISIFSLETF------QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 588 (790)
Q Consensus 517 ~~l~s~s-dg~I~vwd~~~~------~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~ 588 (790)
.++++++ |+.+++|++... .....+.+|...|.+++|+|++ .+++|+.|++|++||+.+++.+..+.+|...
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD 198 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC
Confidence 9999999 999999998643 3455667899999999999999 9999999999999999999999999999999
Q ss_pred EEEEEEeC--CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEEC
Q 003871 589 ITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (790)
Q Consensus 589 v~~l~~sp--dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~ 665 (790)
|.+++|+| ++++|++|+.|++|++||+++++. +. ...+|. ..|++++|+|++.+|+++ .|+.|++||+
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~-----~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~ 269 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC-----VQ-AFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDL 269 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE-----EE-EecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 99999988 578999999999999999998543 33 234565 689999999999999995 8999999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCC
Q 003871 666 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 745 (790)
Q Consensus 666 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 745 (790)
++++.+..+....+...+.+++|+|+|++|++|+.|+.|++||+.+++.+..+. || ...|. +++|+| ++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~-------~h-~~~v~--~l~~sp-dg 338 (354)
T 2pbi_B 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-------GH-ENRVS--TLRVSP-DG 338 (354)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-------CC-SSCEE--EEEECT-TS
T ss_pred CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE-------CC-CCcEE--EEEECC-CC
Confidence 998887777654445689999999999999999999999999999998887765 55 45666 999999 89
Q ss_pred CEEEEEeCCCcEEEEe
Q 003871 746 NRIALGLTNGRVHVIE 761 (790)
Q Consensus 746 ~~las~s~Dg~i~iW~ 761 (790)
++|++|+.||+|+||+
T Consensus 339 ~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 339 TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEETTSEEEEEC
T ss_pred CEEEEEcCCCCEEecC
Confidence 9999999999999996
No 18
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-38 Score=339.60 Aligned_cols=296 Identities=15% Similarity=0.161 Sum_probs=238.3
Q ss_pred CCCC-ceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 439 SFGG-RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 439 ~h~~-~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
+|.. .|++++|+|+|++|++|+.|++|++|++.++.. ........+|...|.+++|+
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~--------------------~~~~~~~~~h~~~v~~~~~sp~ 72 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW--------------------ICKSVLSEGHQRTVRKVAWSPC 72 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE--------------------EEEEEECSSCSSCEEEEEECTT
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc--------------------eeeeeeccccCCcEEEEEECCC
Confidence 6877 999999999999999999999999999875422 11112234799999999999
Q ss_pred CcEEEEec-CCeEEEEECCCC--cEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc---eEEEEcCCCCC
Q 003871 516 GSHLFSAS-GGKISIFSLETF--QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQNR 588 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~--~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~---~~~~l~~h~~~ 588 (790)
+++|++++ |++|++|+..++ +++..+.+|...|.+++|+|++ +|++|+.|++|++||+.++. .+..+.+|...
T Consensus 73 g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC
T ss_pred CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC
Confidence 89999999 999999999876 4677889999999999999999 99999999999999998763 45678889999
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCC
Q 003871 589 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (790)
Q Consensus 589 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~ 667 (790)
|.+++|+|++++|++|+.|++|++||.++++.. ... ...+|. ..|++++|+|+|++|+++ .|+.|++||...
T Consensus 153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~---~~~-~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWV---CCA-TLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEEEETTEEE---EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE---EEE-EecCCC---CceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence 999999999999999999999999999875422 222 234666 699999999999999995 899999999632
Q ss_pred C---------------ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE----EEEeccccccCCCC
Q 003871 668 L---------------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL----RCQINLTAYAQPGT 728 (790)
Q Consensus 668 ~---------------~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~----~~~~~~~~~~~~gh 728 (790)
. +++..+.+ .|...|.+++|+|++..|++++.|+.|++|+...+.. ...+.. ....+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~--~~~~~h 302 (345)
T 3fm0_A 226 PGNEQGVACSGSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA--HLHQAH 302 (345)
T ss_dssp TTCTTCCCCC---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEE--EETTSS
T ss_pred CCCCccceeeccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEe--eecccc
Confidence 2 22333332 3688999999999999999999999999999876531 111111 111255
Q ss_pred cccccceEEEEEecCCC-CEEEEEeCCCcEEEEecCCCccc
Q 003871 729 ISLELYPLVIAAHPLEP-NRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 729 ~~~~v~~~~v~~sp~d~-~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
...|+ +++|+| ++ .+||+||.||+|++|++.+++..
T Consensus 303 -~~~V~--~v~~~p-~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 303 -SQDVN--CVAWNP-KEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp -SSCEE--EEEECS-SSTTEEEEEETTSCEEEEEECC----
T ss_pred -cCcEe--EeEEeC-CCceEEEEcCCCCcEEEEEecCCCCc
Confidence 45666 999999 55 69999999999999999887754
No 19
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-38 Score=350.38 Aligned_cols=338 Identities=16% Similarity=0.181 Sum_probs=273.2
Q ss_pred eccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCcccceeccCCCceEeeec----ccc
Q 003871 350 DFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSL-PDADSAVCAKSLEKSVNLKL----QLI 424 (790)
Q Consensus 350 iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~-~la~~~at~s~d~~i~iwd~----~~~ 424 (790)
+|+....... .....|.+.| ++++|+ |||+ ++ |+|+.|+.|++|++ ..
T Consensus 29 ~~~~~~~~~~--------~~~~~~~~~v-------~~~~~s-------~~~~~~l----~~~~~dg~i~iw~~~~~~~~- 81 (425)
T 1r5m_A 29 SDDLDGFVKI--------LKEIVKLDNI-------VSSTWN-------PLDESIL----AYGEKNSVARLARIVETDQE- 81 (425)
T ss_dssp -----CCCEE--------CEEEEECSCC-------SEEEEC-------SSCTTEE----EEEETBTEEEEEEEEEC----
T ss_pred cccchhhhhh--------eeeeeccCce-------EEEEEC-------CCCCcEE----EEecCCceEEEEEEecccCC-
Confidence 6776554443 2233466888 999999 9999 88 99999999999999 63
Q ss_pred CCCCc-------eeeeeccCC------CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccC
Q 003871 425 NEPSE-------CRTLLLPDN------SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQP 491 (790)
Q Consensus 425 ~~~~~-------~~~~~l~~~------~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~ 491 (790)
+. ...+..+.. +|.+.|.+++|+|+|++|++++.||.|++|+... .
T Consensus 82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~-~----------------- 140 (425)
T 1r5m_A 82 ---GKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG-A----------------- 140 (425)
T ss_dssp ------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEETTS-C-----------------
T ss_pred ---ccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC-C-----------------
Confidence 22 222221111 2678999999999999999999999999998332 1
Q ss_pred CCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCC---------------eEEEEE
Q 003871 492 SSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPI---------------ATYFIL 553 (790)
Q Consensus 492 ~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~---------------v~~l~~ 553 (790)
.... ..+|...|.+++|+ +++|++++ |+.|++||+.+++.+..+..+... +.+++|
T Consensus 141 ----~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (425)
T 1r5m_A 141 ----LLNV--LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW 214 (425)
T ss_dssp ----EEEE--ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEE
T ss_pred ----eeee--ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEE
Confidence 1111 12689999999999 88899888 999999999999999998877766 899999
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCC
Q 003871 554 LPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 633 (790)
Q Consensus 554 s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 633 (790)
+|++.+++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++. +. ...+|
T Consensus 215 ~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~-~~~~~ 288 (425)
T 1r5m_A 215 VDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS-----QN-CFYGH 288 (425)
T ss_dssp EETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC-----SE-EECCC
T ss_pred cCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc-----ce-EecCC
Confidence 9988888999999999999999999999999999999999999999999999999999999998542 23 22344
Q ss_pred CCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003871 634 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 634 ~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
. ..|.+++|+|++ ++++ +.|+.|++||+++++.+..+.. |...|.+++|+|++++|++++.||.|++||+.++
T Consensus 289 ~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 289 S---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV--DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp S---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC--TTCCEEEEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred C---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc--CCccEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 4 689999999999 7776 5899999999999998888864 6789999999999999999999999999999988
Q ss_pred e--------------------EEEEeccccccCCCCccc-ccceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 713 E--------------------LRCQINLTAYAQPGTISL-ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 713 ~--------------------~~~~~~~~~~~~~gh~~~-~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
+ .+..+. +|... .|. +++|+| ++++|++++.||.|++|++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~--~~~~s~-~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 363 NSKSRSLYGNRDGILNPLPIPLYASYQ-------SSQDNDYIF--DLSWNC-AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp HC--------------CEECCEEEEEC-------CTTCCCCEE--EEEECT-TSSEEEEEESSSCCEEEECC
T ss_pred ccceeeeecccccccCcccchhhhhhc-------CcccCCceE--EEEccC-CCceEEEEecCceEEEEeec
Confidence 7 666665 44333 566 999999 89999999999999999985
No 20
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-38 Score=343.39 Aligned_cols=289 Identities=14% Similarity=0.130 Sum_probs=246.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
.++.||.+.| ++++|+ |||+++ +||+.|++|++||... ......+. .|...|.++
T Consensus 58 ~~l~gH~~~V-------~~~~~s-------~d~~~l----~s~s~Dg~v~vWd~~~---~~~~~~~~----~~~~~v~~~ 112 (354)
T 2pbi_B 58 RTLKGHGNKV-------LCMDWC-------KDKRRI----VSSSQDGKVIVWDSFT---TNKEHAVT----MPCTWVMAC 112 (354)
T ss_dssp EEEECCSSCE-------EEEEEC-------TTSSEE----EEEETTSEEEEEETTT---CCEEEEEE----CSSSCCCEE
T ss_pred EEecCCCCeE-------EEEEEC-------CCCCEE----EEEeCCCeEEEEECCC---CCcceEEe----cCCCCEEEE
Confidence 6778999999 999999 999999 9999999999999863 23333333 478899999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-C
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 524 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-d 524 (790)
+|+|+|+++++++.|+.+++|++...... ........ ..+|...|.+++|+ +..|++++ |
T Consensus 113 ~~sp~g~~lasg~~d~~i~v~~~~~~~~~--------------~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~t~s~D 175 (354)
T 2pbi_B 113 AYAPSGCAIACGGLDNKCSVYPLTFDKNE--------------NMAAKKKS---VAMHTNYLSACSFTNSDMQILTASGD 175 (354)
T ss_dssp EECTTSSEEEEESTTSEEEEEECCCCTTC--------------CSGGGCEE---EEECSSCEEEEEECSSSSEEEEEETT
T ss_pred EECCCCCEEEEeeCCCCEEEEEEeccccc--------------ccccccee---eeccCCcEEEEEEeCCCCEEEEEeCC
Confidence 99999999999999999999998653220 00000011 11589999999999 77899998 9
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcC--CC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEE
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 601 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~--~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l 601 (790)
++|++||+++++.+..+.+|...|.+++|+| +| .+++|+.||+|++||+++++++..+.+|...|++++|+|++++|
T Consensus 176 ~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l 255 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAF 255 (354)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEE
Confidence 9999999999999999999999999999987 46 99999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeeceeeeeecc-CCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCC
Q 003871 602 VSSGADAQLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKM 679 (790)
Q Consensus 602 ~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~-~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h 679 (790)
++|+.|++|++||+++++. +..+.. .+. ..+.+++|+|++++|+++ .|+.|++||+.+++.+..+.+ |
T Consensus 256 ~s~s~D~~v~lwd~~~~~~-----~~~~~~~~~~---~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~--h 325 (354)
T 2pbi_B 256 ASGSDDATCRLYDLRADRE-----VAIYSKESII---FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG--H 325 (354)
T ss_dssp EEEETTSCEEEEETTTTEE-----EEEECCTTCC---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC--C
T ss_pred EEEeCCCeEEEEECCCCcE-----EEEEcCCCcc---cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEEC--C
Confidence 9999999999999998542 221111 112 478999999999999996 899999999999998888754 7
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 680 DLPITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 680 ~~~v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
...|++++|+|+|++|++|+.||+|++|+
T Consensus 326 ~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 326 ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 89999999999999999999999999996
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.1e-38 Score=331.73 Aligned_cols=293 Identities=16% Similarity=0.182 Sum_probs=244.3
Q ss_pred CCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-
Q 003871 438 NSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg-~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s- 515 (790)
.+|.+.|.+++|+|++ ++|++++.|++|++|++..... ..+..... ..+|...|.+++|+
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~----------------~~~~~~~~--~~~h~~~v~~~~~s~ 75 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ----------------KFGVPVRS--FKGHSHIVQDCTLTA 75 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT----------------EEEEEEEE--EECCSSCEEEEEECT
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc----------------cccccceE--EeCCcccEEEEEECC
Confidence 4799999999999965 8999999999999999864322 00111111 23799999999999
Q ss_pred -CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEE
Q 003871 516 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 592 (790)
Q Consensus 516 -~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l 592 (790)
++++++++ |++|++||+.+++.+..+.+|...|.+++|+|++ .+++|+.|++|++||++ +..+..+.+|...|.++
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~ 154 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQV 154 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEE
Confidence 88999999 9999999999999999999999999999999999 99999999999999986 56778889999999999
Q ss_pred EEeCC------CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEEC
Q 003871 593 AYSLS------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (790)
Q Consensus 593 ~~spd------g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~ 665 (790)
.|+|+ +..+++++.|++|++||+++++. .. ...+|. ..|.+++|+|++++|+++ .|+.|++||+
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----~~-~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI-----EA-DFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNL 225 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETTTTEE-----EE-EECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECCcchh-----he-eecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 99985 45899999999999999998442 22 234566 699999999999999995 8999999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCC
Q 003871 666 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 745 (790)
Q Consensus 666 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 745 (790)
.+++.+..+.. ...|.+++|+|++.++++++. +.+++|++..+.....+..........+...+. +++|+| ||
T Consensus 226 ~~~~~~~~~~~---~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~sp-dg 298 (319)
T 3frx_A 226 AAKKAMYTLSA---QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV--SLAWSA-DG 298 (319)
T ss_dssp TTTEEEEEEEC---CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEE--EEEECT-TS
T ss_pred CCCcEEEEecC---CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCccee--EEEECC-CC
Confidence 99999888864 568999999999999998875 559999999988777765321111011123344 999999 89
Q ss_pred CEEEEEeCCCcEEEEecCCC
Q 003871 746 NRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 746 ~~las~s~Dg~i~iW~~~~~ 765 (790)
++|++|+.||.|+||++.++
T Consensus 299 ~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 299 QTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SEEEEEETTSCEEEEEEEEC
T ss_pred CEEEEeecCceEEEEEEeec
Confidence 99999999999999999765
No 22
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.4e-38 Score=367.27 Aligned_cols=384 Identities=11% Similarity=0.033 Sum_probs=304.0
Q ss_pred ccccCccccch----hhhhhhhccCCC-ccccccccCC--C-------CCCCcceeeeccCCCc--------cccccccc
Q 003871 307 DKLKFPSMDKS----RLLSLIKQIMDW-WVPYCINVMP--N-------ANNETISLKDFPTVSN--------LRYASSIL 364 (790)
Q Consensus 307 ~~i~iwd~~~~----~~~~~l~~h~~~-v~v~~i~fsp--d-------~~d~~i~l~iwd~~~g--------~~~~~~~~ 364 (790)
+.|.+||+.++ +....+.+|.+. +. +++|+| + +.|++|+ +||..++ ..+
T Consensus 39 ~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~--~~~~sp~~~~~~l~s~~~dg~v~--vw~~~~~~~~~~~~~~~~----- 109 (615)
T 1pgu_A 39 KSAFVRCLDDGDSKVPPVVQFTGHGSSVVT--TVKFSPIKGSQYLCSGDESGKVI--VWGWTFDKESNSVEVNVK----- 109 (615)
T ss_dssp TEEEEEECCSSCCSSCSEEEECTTTTSCEE--EEEECSSTTCCEEEEEETTSEEE--EEEEEEEGGGTEEEEEEE-----
T ss_pred CeEEEEECCCCCCccccceEEecCCCceEE--EEEECcCCCCCEEEEecCCCEEE--EEeCCCCccccccccccc-----
Confidence 77889999888 888999999998 88 999999 8 7899999 9999866 444
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCC----CceEeeeccccCCCCceeeeeccCCCC
Q 003871 365 TDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSL----EKSVNLKLQLINEPSECRTLLLPDNSF 440 (790)
Q Consensus 365 ~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d----~~i~iwd~~~~~~~~~~~~~~l~~~~h 440 (790)
..+.+|...| .+++|+ |||+++ ++++.+ +.|++||.. .....+ .+|
T Consensus 110 ---~~~~~~~~~v-------~~~~~s-------~~~~~l----~~~~~~~~~~~~v~~~d~~-----~~~~~~----~~~ 159 (615)
T 1pgu_A 110 ---SEFQVLAGPI-------SDISWD-------FEGRRL----CVVGEGRDNFGVFISWDSG-----NSLGEV----SGH 159 (615)
T ss_dssp ---EEEECCSSCE-------EEEEEC-------TTSSEE----EEEECCSSCSEEEEETTTC-----CEEEEC----CSC
T ss_pred ---chhhcccccE-------EEEEEe-------CCCCEE----EEeccCCCCccEEEEEECC-----Ccceee----ecC
Confidence 6778899998 999999 999999 999887 789999842 333332 369
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCC---CeEEEEec-
Q 003871 441 GGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD---SISCFALR- 515 (790)
Q Consensus 441 ~~~V~~l~~spdg~-~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~V~~l~~s- 515 (790)
...|.+++|+|+++ .+++++.|+.|++||..+... .... .+|.. .|.+++|+
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~---------------------~~~~--~~~~~~~~~v~~~~~~~ 216 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF---------------------SASD--RTHHKQGSFVRDVEFSP 216 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE---------------------EEEE--CSSSCTTCCEEEEEECS
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce---------------------eeee--cccCCCCceEEEEEECC
Confidence 99999999999998 799999999999999765332 2211 25777 99999999
Q ss_pred --CcEEEEec-CCeEEEEECCCCcEEEEE-c---CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCC--
Q 003871 516 --GSHLFSAS-GGKISIFSLETFQTLATF-A---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-- 585 (790)
Q Consensus 516 --~~~l~s~s-dg~I~vwd~~~~~~~~~~-~---~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h-- 585 (790)
++++++++ ||.|++||+.+++.+..+ . .|...|.+++|+ ++ .+++++.||.|++||+.+++.+..+..+
T Consensus 217 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 295 (615)
T 1pgu_A 217 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 295 (615)
T ss_dssp TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC
Confidence 46888888 999999999999999998 6 899999999999 88 9999999999999999999998888776
Q ss_pred --CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeecee-----eeee----------------------ccCCCC-
Q 003871 586 --QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF-----LHSF----------------------QTGLVP- 635 (790)
Q Consensus 586 --~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~-----l~~~----------------------~~~~~~- 635 (790)
...+.++.|+ +++++++++.|+.|++||+.+++...... +..+ ..+|..
T Consensus 296 ~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 374 (615)
T 1pgu_A 296 QLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNL 374 (615)
T ss_dssp CGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSC
T ss_pred cccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCc
Confidence 4678888886 88999999999999999998744321100 0000 001110
Q ss_pred ----------------------------------------------------------------------CCCCeEEEEE
Q 003871 636 ----------------------------------------------------------------------ETTIVNHIQF 645 (790)
Q Consensus 636 ----------------------------------------------------------------------~~~~v~~i~~ 645 (790)
+...+.+++|
T Consensus 375 v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (615)
T 1pgu_A 375 IVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL 454 (615)
T ss_dssp EEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred eEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEE
Confidence 0012333333
Q ss_pred eCCCCEEEEE-e-CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccc
Q 003871 646 HPDQIHLLSI-H-EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY 723 (790)
Q Consensus 646 sp~~~~l~~~-~-dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~ 723 (790)
+ +++++++ . |+.|++||+.+++... .....|...|++++|+|+|++|++|+.||.|++||+.+++.+..+.
T Consensus 455 ~--~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~---- 527 (615)
T 1pgu_A 455 S--QNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW---- 527 (615)
T ss_dssp C--SSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS----
T ss_pred c--CCEEEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEee----
Confidence 3 4455553 4 7777888877655442 2223478999999999999999999999999999999999887754
Q ss_pred cCCCCcccccceEEEEEecC---------CCCEEEEEeCCCcEEEEecCCCc
Q 003871 724 AQPGTISLELYPLVIAAHPL---------EPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 724 ~~~gh~~~~v~~~~v~~sp~---------d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
+.|...|. +++|+|. ++++||+++.||.|++|++.++.
T Consensus 528 ---~~h~~~v~--~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 574 (615)
T 1pgu_A 528 ---AFRTSKIN--AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 574 (615)
T ss_dssp ---CCCSSCEE--EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred ---cCCCCcee--EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc
Confidence 41255666 9999993 58999999999999999999874
No 23
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-38 Score=337.81 Aligned_cols=289 Identities=16% Similarity=0.231 Sum_probs=244.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCcccceeccCCCceEeeeccccCCC-C-ceeeeeccCCCCCCce
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTS-LPDADSAVCAKSLEKSVNLKLQLINEP-S-ECRTLLLPDNSFGGRV 444 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg-~~la~~~at~s~d~~i~iwd~~~~~~~-~-~~~~~~l~~~~h~~~V 444 (790)
.++.||.+.| ++++|+ |++ +++ ++|+.|++|++|++...... + ....+ .+|...|
T Consensus 11 ~~l~gH~~~V-------~~l~~~-------~~~~~~l----~s~s~D~~v~~W~~~~~~~~~~~~~~~~----~~h~~~v 68 (319)
T 3frx_A 11 GTLEGHNGWV-------TSLATS-------AGQPNLL----LSASRDKTLISWKLTGDDQKFGVPVRSF----KGHSHIV 68 (319)
T ss_dssp EEECCCSSCE-------EEEEEC-------SSCTTEE----EEEETTSEEEEEEEEEETTEEEEEEEEE----ECCSSCE
T ss_pred EEEccccceE-------EEEEcc-------CCCccEE----EEecCCccEEEecCCCCCccccccceEE----eCCcccE
Confidence 6789999999 999998 765 678 99999999999999631110 1 11222 3799999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEe
Q 003871 445 VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 522 (790)
Q Consensus 445 ~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~ 522 (790)
.+++|+|+|++|++++.|++|++||+.++.. .... .+|...|.+++|+ +.+++++
T Consensus 69 ~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~---------------------~~~~--~~h~~~v~~~~~~~~~~~l~s~ 125 (319)
T 3frx_A 69 QDCTLTADGAYALSASWDKTLRLWDVATGET---------------------YQRF--VGHKSDVMSVDIDKKASMIISG 125 (319)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------EEEE--ECCSSCEEEEEECTTSCEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCCe---------------------eEEE--ccCCCcEEEEEEcCCCCEEEEE
Confidence 9999999999999999999999999876432 2211 2799999999999 8899999
Q ss_pred c-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCC------C-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEE
Q 003871 523 S-GGKISIFSLETFQTLATFANPPPIATYFILLPQ------D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 594 (790)
Q Consensus 523 s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~------g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~ 594 (790)
+ |++|++||+. ++++..+.+|...|.+++++|. + .+++|+.|+.|++||+.+++....+.+|...|++++|
T Consensus 126 s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 204 (319)
T 3frx_A 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204 (319)
T ss_dssp ETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEE
T ss_pred eCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEE
Confidence 9 9999999996 6778888999999999999984 5 7999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeee
Q 003871 595 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQL 674 (790)
Q Consensus 595 spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~ 674 (790)
+|+|++|++|+.|++|++||+.+++. +..+. .+ ..|.+++|+|++.+++++.++.+++|++..+..+..+
T Consensus 205 sp~g~~l~s~~~dg~i~iwd~~~~~~-----~~~~~-~~----~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~ 274 (319)
T 3frx_A 205 SPDGTLIASAGKDGEIMLWNLAAKKA-----MYTLS-AQ----DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDL 274 (319)
T ss_dssp CTTSSEEEEEETTCEEEEEETTTTEE-----EEEEE-CC----SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcE-----EEEec-CC----CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeecc
Confidence 99999999999999999999998543 33222 23 4799999999999999988888999999887766665
Q ss_pred cCC------CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003871 675 VPD------KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 675 ~~~------~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
... .|...+.+++|+|||++|++|+.||.|++||+.++
T Consensus 275 ~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 275 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 432 13567999999999999999999999999998764
No 24
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-39 Score=385.36 Aligned_cols=377 Identities=11% Similarity=0.084 Sum_probs=275.8
Q ss_pred hccCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 324 KQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSR 396 (790)
Q Consensus 324 ~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~ 396 (790)
.+|.+.|. +++|+|+ +.|++|+ +||..+++.+ ..+ .|...| ++++|+
T Consensus 14 ~gh~~~V~--~lafspdg~~lAsgs~Dg~I~--lw~~~~~~~~--------~~~-~~~~~V-------~~l~fs------ 67 (902)
T 2oaj_A 14 YGMSSKPI--AAAFDFTQNLLAIATVTGEVH--IYGQQQVEVV--------IKL-EDRSAI-------KEMRFV------ 67 (902)
T ss_dssp EECSSCEE--EEEEETTTTEEEEEETTSEEE--EECSTTCEEE--------EEC-SSCCCE-------EEEEEE------
T ss_pred cCCCCCcE--EEEECCCCCEEEEEeCCCEEE--EEeCCCcEEE--------EEc-CCCCCE-------EEEEEc------
Confidence 36778777 9999999 7899999 9999887764 333 477788 999999
Q ss_pred CCCCCCCcccceeccCCCceEeeeccccCCCCce-eeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 003871 397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 475 (790)
Q Consensus 397 s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~-~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~ 475 (790)
| |++| ++++.|++|++||+.. +.+ ..+. |...|++++|+|+++++++|+.||.|++||+.++..
T Consensus 68 -p-g~~L----~S~s~D~~v~lWd~~~----~~~~~~~~-----~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 68 -K-GIYL----VVINAKDTVYVLSLYS----QKVLTTVF-----VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL 132 (902)
T ss_dssp -T-TTEE----EEEETTCEEEEEETTT----CSEEEEEE-----CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred -C-CCEE----EEEECcCeEEEEECCC----CcEEEEEc-----CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 8 8888 9999999999999973 443 3332 678999999999999999999999999999886432
Q ss_pred cccccccccc-cccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCcEEEEEcCC------
Q 003871 476 SLEEENVNME-SQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANP------ 544 (790)
Q Consensus 476 ~~g~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~------ 544 (790)
. .+. +.+|... ....+|..+|.+++|+ +..+++|+ ||.| +||+++++.+..+..|
T Consensus 133 ~------~~~i~~~~~~~-------~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~ 198 (902)
T 2oaj_A 133 S------SFKLDNLQKSS-------FFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAP 198 (902)
T ss_dssp E------EEEECCHHHHH-------TCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCC
T ss_pred c------cceeccccccc-------cccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCC
Confidence 0 000 0001000 1123689999999999 36788888 8999 9999999999888765
Q ss_pred ------------CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEE--E---cC-------------CCCCEEEEE
Q 003871 545 ------------PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK--L---KG-------------HQNRITCLA 593 (790)
Q Consensus 545 ------------~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~--l---~~-------------h~~~v~~l~ 593 (790)
...|.+++|+|+| +|++|+.||+|++||+++++++.. + .+ |...|++++
T Consensus 199 ~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~ 278 (902)
T 2oaj_A 199 GGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVY 278 (902)
T ss_dssp CSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEE
T ss_pred CcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEE
Confidence 4679999999999 999999999999999999887653 2 12 345799999
Q ss_pred Ee----CCC-CEEEEEeCC-----CcEEEEEC------------------------------------------------
Q 003871 594 YS----LSL-NVLVSSGAD-----AQLCVWDA------------------------------------------------ 615 (790)
Q Consensus 594 ~s----pdg-~~l~s~s~d-----g~I~vwd~------------------------------------------------ 615 (790)
|+ |++ .++++|+.| ..+.+|++
T Consensus 279 w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~ 358 (902)
T 2oaj_A 279 WMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYF 358 (902)
T ss_dssp EEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHH
T ss_pred EEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCc
Confidence 95 443 456777554 25666663
Q ss_pred -----------------------CCCceeece-eeeeeccCCCC-------------------------------CCCCe
Q 003871 616 -----------------------VGWKKLCSK-FLHSFQTGLVP-------------------------------ETTIV 640 (790)
Q Consensus 616 -----------------------~~~~~~~~~-~l~~~~~~~~~-------------------------------~~~~v 640 (790)
.++...... ........|.+ +...+
T Consensus 359 ~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v 438 (902)
T 2oaj_A 359 AGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTK 438 (902)
T ss_dssp HHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCC
T ss_pred CCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCC
Confidence 111000000 00000000100 00233
Q ss_pred EEEEEeCCCCEEEEE-eCCcEEEEECCCCcee--eeec-------CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 003871 641 NHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT--SQLV-------PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 641 ~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~--~~~~-------~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~ 710 (790)
.+++|+|++++|+++ .|++|++||+.++... ..+. ...|...|.+++|+|||++||+|+.||+|++||+.
T Consensus 439 ~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~ 518 (902)
T 2oaj_A 439 RQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYE 518 (902)
T ss_dssp CCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred CcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEec
Confidence 345567899999995 8999999999887431 1111 11468899999999999999999999999999998
Q ss_pred CCeE---------------------------------------------EEEeccccccCCCCcccccceEEEEEecCCC
Q 003871 711 TLEL---------------------------------------------RCQINLTAYAQPGTISLELYPLVIAAHPLEP 745 (790)
Q Consensus 711 ~~~~---------------------------------------------~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 745 (790)
+++. +..+ .|| .+.|+ +++|+| ||
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l-------~~h-~~~V~--svafSp-dG 587 (902)
T 2oaj_A 519 VNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV-------HAN-KGKTS--AINNSN-IG 587 (902)
T ss_dssp ECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE-------CCC-SCSEE--EEEECB-TS
T ss_pred CccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEE-------EcC-CCcEE--EEEecC-Cc
Confidence 7631 2222 255 55677 999999 89
Q ss_pred CEEEEEeCCCcEEEEecCCCcc
Q 003871 746 NRIALGLTNGRVHVIEPLESEV 767 (790)
Q Consensus 746 ~~las~s~Dg~i~iW~~~~~~~ 767 (790)
+||+|+.||+|+|||+.++..
T Consensus 588 -~lAsgs~D~tv~lwd~~~~~~ 608 (902)
T 2oaj_A 588 -FVGIAYAAGSLMLIDRRGPAI 608 (902)
T ss_dssp -EEEEEETTSEEEEEETTTTEE
T ss_pred -EEEEEeCCCcEEEEECCCCeE
Confidence 999999999999999877653
No 25
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.1e-37 Score=332.29 Aligned_cols=317 Identities=14% Similarity=0.147 Sum_probs=264.6
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
.+++|+ |||+.+ +++..++.+..|.... ....... .+|...|.+++|+|+++++++++ ||.
T Consensus 13 ~~~~~s-------~dg~~~----~~~~~~~~~~~~~~~~---~~~~~~~----~~h~~~v~~~~~~~~~~~l~~~~-dg~ 73 (337)
T 1gxr_A 13 YSFHVT-------ADGQMQ----PVPFPPDALIGPGIPR---HARQINT----LNHGEVVCAVTISNPTRHVYTGG-KGC 73 (337)
T ss_dssp CEEEEC-------SSSCEE----ECCCCTTSSSSTTCCS---EEEEEEE----ECCSSCCCEEEECSSSSEEEEEC-BSE
T ss_pred eEEEEC-------CCCCEE----EeecCCCcEeccccCC---cccccee----ccCCCceEEEEEecCCcEEEEcC-CCe
Confidence 899999 999999 8888888888876642 1222221 25999999999999999999998 999
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCc--EEE
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLA 539 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~--~~~ 539 (790)
|++|++.++... . ........+|...|.+++|+ ++++++++ ||.|++||+.+++ ...
T Consensus 74 i~iw~~~~~~~~-----------------~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 135 (337)
T 1gxr_A 74 VKVWDISHPGNK-----------------S-PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135 (337)
T ss_dssp EEEEETTSTTCC-----------------S-CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred EEEEECCCCCce-----------------e-eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee
Confidence 999998864320 0 00000112588999999999 88899988 8999999999887 566
Q ss_pred EEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 003871 540 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (790)
Q Consensus 540 ~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 618 (790)
.+..|...|.+++|+|++ .+++++.||.|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||++++
T Consensus 136 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 215 (337)
T 1gxr_A 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215 (337)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC
Confidence 778899999999999999 9999999999999999999999999999999999999999999999999999999999986
Q ss_pred ceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEE
Q 003871 619 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 697 (790)
Q Consensus 619 ~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 697 (790)
+.... +. +. ..+.+++|+|++++++++ .++.|++||+.+++.. .+. .|...|.+++|+|++++|++
T Consensus 216 ~~~~~-----~~--~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~--~~~~~v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 216 RQLQQ-----HD--FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH--LHESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp EEEEE-----EE--CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC--CCSSCEEEEEECTTSSEEEE
T ss_pred ceEee-----ec--CC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc--CCccceeEEEECCCCCEEEE
Confidence 53321 21 22 589999999999999995 7999999999987764 332 46899999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 698 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 698 gs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
++.||.|++||+.+++.+.... | ...+. +++|+| ++++|++++.||.|++|++.
T Consensus 283 ~~~dg~i~~~~~~~~~~~~~~~--------~-~~~v~--~~~~s~-~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 283 TGKDNLLNAWRTPYGASIFQSK--------E-SSSVL--SCDISV-DDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EETTSEEEEEETTTCCEEEEEE--------C-SSCEE--EEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred ecCCCcEEEEECCCCeEEEEec--------C-CCcEE--EEEECC-CCCEEEEecCCCeEEEEEEe
Confidence 9999999999999998775532 2 34555 999999 89999999999999999973
No 26
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.1e-38 Score=344.96 Aligned_cols=291 Identities=14% Similarity=0.216 Sum_probs=245.7
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.+|.+.|++++|+|+|++|++|+.|++|++||..++.. ... ...|...|.+++|+
T Consensus 63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~--------------------~~~---~~~h~~~v~~~~~s~~ 119 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK--------------------THA---IKLHCPWVMECAFAPN 119 (380)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE--------------------EEE---EECCCTTCCCCEECTT
T ss_pred cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc--------------------ceE---EecCCCCEEEEEECCC
Confidence 37999999999999999999999999999999876432 111 12588999999999
Q ss_pred CcEEEEec-CCeEEEEECCCCc-------EEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEE---
Q 003871 516 GSHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL--- 582 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~-------~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l--- 582 (790)
++++++|+ |+.+++||+.+.. ....+.+|...|.++.|+|++ .+++|+.|++|++||+.+++.+..+
T Consensus 120 g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~ 199 (380)
T 3iz6_a 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE 199 (380)
T ss_dssp SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC
T ss_pred CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc
Confidence 89999999 9999999987532 345677899999999999986 8999999999999999999988877
Q ss_pred --cCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCC
Q 003871 583 --KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG 658 (790)
Q Consensus 583 --~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg 658 (790)
.+|...|.+++|+| +++++++|+.|++|++||++... ..+. ...+|. +.|.+++|+|++.+|+++ .|+
T Consensus 200 ~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~----~~~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~D~ 271 (380)
T 3iz6_a 200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS----RAVR-TYHGHE---GDINSVKFFPDGQRFGTGSDDG 271 (380)
T ss_dssp SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC----CCCE-EECCCS---SCCCEEEECTTSSEEEEECSSS
T ss_pred cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC----cceE-EECCcC---CCeEEEEEecCCCeEEEEcCCC
Confidence 67999999999987 88999999999999999998522 2333 344666 799999999999999996 899
Q ss_pred cEEEEECCCCceeeeecCCC-----CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCccccc
Q 003871 659 QIDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 733 (790)
Q Consensus 659 ~I~iwd~~~~~~~~~~~~~~-----h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v 733 (790)
+|++||+++++.+..+.... +...|++++|+|+|++|++|+.||.|++||+.+++....+.. ...+| .+.|
T Consensus 272 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~h-~~~v 347 (380)
T 3iz6_a 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT---LQNSH-EGRI 347 (380)
T ss_dssp CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC---SCSSC-CCCC
T ss_pred eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec---ccCCC-CCce
Confidence 99999999999888775422 123589999999999999999999999999999988776632 11255 5577
Q ss_pred ceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 734 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 734 ~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
. +++|+| +|.+|++|+.||+|+||++..++
T Consensus 348 ~--~l~~s~-dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 348 S--CLGLSS-DGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp C--EEEECS-SSSEEEEECTTSCEEEEECCSSS
T ss_pred E--EEEECC-CCCEEEEeeCCCCEEEEecCCCc
Confidence 7 999999 89999999999999999997654
No 27
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.5e-37 Score=324.83 Aligned_cols=284 Identities=19% Similarity=0.251 Sum_probs=245.2
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.+|...|.+++|+|+|++|++++.||.|++|+..++.. ... ..+|...|.+++|+
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~---------------------~~~--~~~h~~~v~~~~~~~~ 76 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---------------------EKT--ISGHKLGISDVAWSSD 76 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------EEE--ECCCSSCEEEEEECTT
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc---------------------chh--hccCCCceEEEEEcCC
Confidence 47999999999999999999999999999999765432 111 12689999999999
Q ss_pred CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEE
Q 003871 516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 593 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~ 593 (790)
+++|++++ |+.|++||+.+++++..+.+|...|.+++|+|++ ++++|+.||.|++||+++++.+..+..|..+|.+++
T Consensus 77 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 156 (312)
T 4ery_A 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 156 (312)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEE
Confidence 88999998 9999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceee
Q 003871 594 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 672 (790)
Q Consensus 594 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~ 672 (790)
|+|+++++++|+.|+.|++||+++++. +..+...+. ..+..++|+|++++|+++ .|+.|++||+++++.+.
T Consensus 157 ~~~~~~~l~~~~~d~~i~~wd~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 228 (312)
T 4ery_A 157 FNRDGSLIVSSSYDGLCRIWDTASGQC-----LKTLIDDDN---PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 228 (312)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCE-----EEEECCSSC---CCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCCce-----eeEEeccCC---CceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 999999999999999999999998543 332333444 589999999999999985 89999999999999988
Q ss_pred eecCCCCCCCeEEEEEe-cCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEE
Q 003871 673 QLVPDKMDLPITYATYS-CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 673 ~~~~~~h~~~v~~l~~s-~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~ 751 (790)
.+..+..........++ +++++|++|+.||.|++||+.+++.+..+. || ...|. +++|+| ++++++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-------~h-~~~v~--~~~~~p-~~~~l~s~ 297 (312)
T 4ery_A 229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-------GH-TDVVI--STACHP-TENIIASA 297 (312)
T ss_dssp EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC-------CC-SSCEE--EEEECS-SSSEEEEE
T ss_pred EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh-------cc-CCcEE--EEeecC-cCCceEEE
Confidence 88654322233333444 678999999999999999999999988876 55 44565 999999 89999999
Q ss_pred e--CCCcEEEEecC
Q 003871 752 L--TNGRVHVIEPL 763 (790)
Q Consensus 752 s--~Dg~i~iW~~~ 763 (790)
+ .|++|++|+..
T Consensus 298 ~~~~d~~i~~W~~d 311 (312)
T 4ery_A 298 ALENDKTIKLWKSD 311 (312)
T ss_dssp ECTTTCCEEEEECC
T ss_pred EccCCccEEEecCC
Confidence 7 69999999864
No 28
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=334.42 Aligned_cols=304 Identities=13% Similarity=0.122 Sum_probs=241.5
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEE
Q 003871 368 PNQEGRPL-DASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVR 446 (790)
Q Consensus 368 ~~l~~h~~-~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~ 446 (790)
.++.+|.+ .+ ++++|+ |||++| |+|+.|++|+|||+.. +..........+|...|.+
T Consensus 9 ~~~~~h~~~~v-------~~l~~s-------p~g~~l----as~~~D~~i~iw~~~~----~~~~~~~~~~~~h~~~v~~ 66 (345)
T 3fm0_A 9 GRVPAHPDSRC-------WFLAWN-------PAGTLL----ASCGGDRRIRIWGTEG----DSWICKSVLSEGHQRTVRK 66 (345)
T ss_dssp EEECCSTTSCE-------EEEEEC-------TTSSCE----EEEETTSCEEEEEEET----TEEEEEEEECSSCSSCEEE
T ss_pred eeecCCCCCcE-------EEEEEC-------CCCCEE----EEEcCCCeEEEEEcCC----CcceeeeeeccccCCcEEE
Confidence 67789988 77 999999 999999 9999999999999973 3221111111479999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-
Q 003871 447 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS- 523 (790)
Q Consensus 447 l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s- 523 (790)
++|+|+|++|++++.|+++++|+...... .... ...+|...|.+++|+ +++|++++
T Consensus 67 ~~~sp~g~~l~s~s~D~~v~iw~~~~~~~-------------------~~~~--~~~~h~~~v~~v~~sp~~~~l~s~s~ 125 (345)
T 3fm0_A 67 VAWSPCGNYLASASFDATTCIWKKNQDDF-------------------ECVT--TLEGHENEVKSVAWAPSGNLLATCSR 125 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEECCC-E-------------------EEEE--EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEECCCCCEEEEEECCCcEEEEEccCCCe-------------------EEEE--EccCCCCCceEEEEeCCCCEEEEEEC
Confidence 99999999999999999999999765321 1111 123799999999999 89999999
Q ss_pred CCeEEEEECCCC---cEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc--eEEEEcCCCCCEEEEEEeCC
Q 003871 524 GGKISIFSLETF---QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCLAYSLS 597 (790)
Q Consensus 524 dg~I~vwd~~~~---~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~--~~~~l~~h~~~v~~l~~spd 597 (790)
|+.|++||+.++ .++..+.+|...|.+++|+|++ +|++|+.|++|++||..+++ +...+.+|...|++++|+|+
T Consensus 126 D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 205 (345)
T 3fm0_A 126 DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS 205 (345)
T ss_dssp TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT
T ss_pred CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC
Confidence 999999999875 4566778999999999999999 99999999999999998775 45678999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcee----------eceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECC
Q 003871 598 LNVLVSSGADAQLCVWDAVGWKKL----------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP 666 (790)
Q Consensus 598 g~~l~s~s~dg~I~vwd~~~~~~~----------~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~ 666 (790)
|++|++|+.|++|++||....... ....+.++...|. ..|.+++|+|++..|++ +.|+.|++|+..
T Consensus 206 g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 206 GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS---RTIYDIAWCQLTGALATACGDDAIRVFQED 282 (345)
T ss_dssp SSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCS---SCEEEEEECTTTCCEEEEETTSCEEEEEEC
T ss_pred CCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCC---CcEEEEEEecCCCEEEEEeCCCeEEEEEeC
Confidence 999999999999999997432110 0122332333355 68999999999999998 589999999987
Q ss_pred CCce----eee---ecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEE
Q 003871 667 TLNH----TSQ---LVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQ 717 (790)
Q Consensus 667 ~~~~----~~~---~~~~~h~~~v~~l~~s~dg-~~l~sgs~dg~i~vwd~~~~~~~~~ 717 (790)
.+.. ... .....|...|++++|+|++ .+|++|+.||+|++|++.+++....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 283 PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp TTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred CCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 5431 111 1123478999999999998 5999999999999999998875443
No 29
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.2e-38 Score=347.15 Aligned_cols=281 Identities=17% Similarity=0.184 Sum_probs=247.2
Q ss_pred hhhhhccCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 320 LSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN 392 (790)
Q Consensus 320 ~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~ 392 (790)
...+.+|.+.|. +++|+|+ +.|++|+ +||..+++.. .++.+|.+.| ++++|+
T Consensus 101 ~~~l~gh~~~V~--~~~~~p~~~~l~s~s~Dg~i~--vwd~~~~~~~--------~~l~~h~~~V-------~~v~~~-- 159 (410)
T 1vyh_C 101 KYALSGHRSPVT--RVIFHPVFSVMVSASEDATIK--VWDYETGDFE--------RTLKGHTDSV-------QDISFD-- 159 (410)
T ss_dssp SCEEECCSSCEE--EEEECSSSSEEEEEESSSCEE--EEETTTCCCC--------EEECCCSSCE-------EEEEEC--
T ss_pred eEeecccCCcEE--EEEEcCCCCEEEEEeCCCeEE--EEECCCCcEE--------EEEeccCCcE-------EEEEEc--
Confidence 445778999888 9999998 7899999 9999999887 8899999999 999999
Q ss_pred CCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 003871 393 NQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 472 (790)
Q Consensus 393 ~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~ 472 (790)
|+|+++ ++|+.|++|++||+.. ..+... + .+|...|.+++|+|+|+++++++.|++|++||+.
T Consensus 160 -----~~~~~l----~sgs~D~~i~iwd~~~----~~~~~~-~--~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~- 222 (410)
T 1vyh_C 160 -----HSGKLL----ASCSADMTIKLWDFQG----FECIRT-M--HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ- 222 (410)
T ss_dssp -----TTSSEE----EEEETTSCCCEEETTS----SCEEEC-C--CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-
T ss_pred -----CCCCEE----EEEeCCCeEEEEeCCC----CceeEE-E--cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-
Confidence 999999 9999999999999973 444332 2 3799999999999999999999999888877654
Q ss_pred CCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEE
Q 003871 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFI 552 (790)
Q Consensus 473 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~ 552 (790)
++.++..+.+|...|.++.
T Consensus 223 -------------------------------------------------------------~~~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 223 -------------------------------------------------------------TGYCVKTFTGHREWVRMVR 241 (410)
T ss_dssp -------------------------------------------------------------TCCEEEEEECCSSCEEEEE
T ss_pred -------------------------------------------------------------CCcEEEEEeCCCccEEEEE
Confidence 3556677788999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCC--------------------CCEEEEEeCCCcEE
Q 003871 553 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS--------------------LNVLVSSGADAQLC 611 (790)
Q Consensus 553 ~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd--------------------g~~l~s~s~dg~I~ 611 (790)
++|++ .+++|+.|++|++||+.+++....+.+|...|.+++|+|+ |.++++|+.|++|+
T Consensus 242 ~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~ 321 (410)
T 1vyh_C 242 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321 (410)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence 99999 9999999999999999999999999999999999999996 67899999999999
Q ss_pred EEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEec
Q 003871 612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 690 (790)
Q Consensus 612 vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~ 690 (790)
+||++++.. +. ...+|. ..|++++|+|++++|+++ .|+.|++||+.+++++..+.. |...|++++|+|
T Consensus 322 iwd~~~~~~-----~~-~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~ 390 (410)
T 1vyh_C 322 MWDVSTGMC-----LM-TLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--HEHFVTSLDFHK 390 (410)
T ss_dssp EEETTTTEE-----EE-EEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC--CSSCEEEEEECS
T ss_pred EEECCCCce-----EE-EEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC--CCCcEEEEEEcC
Confidence 999998543 33 233566 689999999999999985 899999999999999888864 788999999999
Q ss_pred CCCEEEEEEcCCeEEEEECC
Q 003871 691 DGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 691 dg~~l~sgs~dg~i~vwd~~ 710 (790)
++.+|++|+.||+|++|+++
T Consensus 391 ~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 391 TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSSCEEEEETTSEEEEEC--
T ss_pred CCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999863
No 30
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-36 Score=331.18 Aligned_cols=303 Identities=14% Similarity=0.145 Sum_probs=237.4
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc---ccccccccccccccCCCceeeeecccCCCCCCeEEEEec
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS---LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 515 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~---~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s 515 (790)
+|...|.+++|+|||++|++++ ++.+++|++.++... .+..... .++. .........+...|.+++|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-----~~~~---~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-----KDPE---NLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------CCCCBEEEEEEC
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc-----cccc---cccccccCCCceeEEEEEEC
Confidence 4899999999999999998876 689999998875540 0000000 0000 00000001244569999999
Q ss_pred --CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEE
Q 003871 516 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 591 (790)
Q Consensus 516 --~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~ 591 (790)
+++|++|+ |+.|++||+.+++.+..+.+|...|.+++|+|++ .+++|+.|++|++||+++++....+. +...+.+
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~ 211 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTT 211 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEE
Confidence 88999999 9999999999999999999999999999999999 99999999999999999998887776 5677999
Q ss_pred EEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeee-eeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCC
Q 003871 592 LAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL 668 (790)
Q Consensus 592 l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~-~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~ 668 (790)
++|+| +++++++|+.|+.|++||++++......... ....+|. ..|.+++|+|++++|+++ .|+.|++||+++.
T Consensus 212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK---DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999 8999999999999999999986543211110 0113455 799999999999999995 8999999999753
Q ss_pred c------------eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceE
Q 003871 669 N------------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 736 (790)
Q Consensus 669 ~------------~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 736 (790)
. +...+. .|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+. || ...|.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~-------~h-~~~v~-- 356 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-------GH-RNSVI-- 356 (393)
T ss_dssp ------------CEEEEEE--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-------CC-SSCEE--
T ss_pred CCcccccCCCCCcceEEEe--cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC-------CC-CCCEE--
Confidence 2 334443 368899999999999999999999999999999999888876 55 44566
Q ss_pred EEEEecC-----CCCEEEEEeCCCcEEEEecCCCc
Q 003871 737 VIAAHPL-----EPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 737 ~v~~sp~-----d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
+++|+|. ++++||+|+.||+|+||++...+
T Consensus 357 ~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~ 391 (393)
T 1erj_A 357 SVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA 391 (393)
T ss_dssp EEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred EEEecCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence 8888752 57899999999999999986543
No 31
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-38 Score=348.79 Aligned_cols=334 Identities=11% Similarity=0.087 Sum_probs=265.6
Q ss_pred CCCCCCCCCCCCCCCCC-CCcccceec----------cCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCC
Q 003871 385 DSSCFNDNNQSRESTSL-PDADSAVCA----------KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG 453 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~-~la~~~at~----------s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg 453 (790)
.+++|+ |||+ ++ ++| +.|+.|++||+........... ..|...|.+++|+|++
T Consensus 16 ~~~~~s-------p~g~~~l----~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~ 79 (416)
T 2pm9_A 16 ATFAWS-------HDKIPLL----VSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-----LQVDSKFNDLDWSHNN 79 (416)
T ss_dssp CBCCBC-------SSSSCEE----EEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-----CCCSSCEEEEEECSSS
T ss_pred ceEeeC-------CCCCCEE----EEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-----EecCCceEEEEECCCC
Confidence 899999 9998 66 888 8999999999974211111111 2488999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEEE
Q 003871 454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISI 529 (790)
Q Consensus 454 ~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~v 529 (790)
++|++++.||.|++|++.+... ....... ..+|...|.+++|+ ++++++++ |+.|++
T Consensus 80 ~~l~~~~~dg~v~vw~~~~~~~-----------------~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 140 (416)
T 2pm9_A 80 KIIAGALDNGSLELYSTNEANN-----------------AINSMAR--FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFI 140 (416)
T ss_dssp SCEEEEESSSCEEEECCSSTTS-----------------CCCEEEE--CCCSSSCCCEEEECSSSTTBEEEECSSSCEEB
T ss_pred CeEEEEccCCeEEEeecccccc-----------------cccchhh--ccCCccceEEEEEcCCCCCEEEEEcCCCeEEE
Confidence 9999999999999999876211 0012221 23699999999999 57889988 999999
Q ss_pred EECCCCc------EEEE---EcCCCCCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCceEEEEcCC------CCCEEEE
Q 003871 530 FSLETFQ------TLAT---FANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKLKGH------QNRITCL 592 (790)
Q Consensus 530 wd~~~~~------~~~~---~~~~~~~v~~l~~s~~-g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h------~~~v~~l 592 (790)
||+.+++ .... +..|...|.+++|+|+ + .+++|+.||.|++||+++++.+..+..| ...|.++
T Consensus 141 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (416)
T 2pm9_A 141 WDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVV 220 (416)
T ss_dssp CBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEE
T ss_pred EECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEE
Confidence 9999876 3332 3578889999999999 5 9999999999999999999998888776 7899999
Q ss_pred EEeCCC-CEEEEEeCCC---cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeC-CCCEEEEE-eCCcEEEEECC
Q 003871 593 AYSLSL-NVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI-HEGQIDVYEAP 666 (790)
Q Consensus 593 ~~spdg-~~l~s~s~dg---~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~-~dg~I~iwd~~ 666 (790)
+|+|++ .++++++.|+ .|++||++++. .++..+..+|. ..|.+++|+| ++.+|+++ .|+.|++||++
T Consensus 221 ~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~----~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~ 293 (416)
T 2pm9_A 221 EWHPKNSTRVATATGSDNDPSILIWDLRNAN----TPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPE 293 (416)
T ss_dssp EECSSCTTEEEEEECCSSSCCCCEEETTSTT----SCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSS
T ss_pred EECCCCCCEEEEEECCCCCceEEEEeCCCCC----CCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCC
Confidence 999997 6899999999 99999999853 23332221555 6999999999 89999985 89999999999
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecc---------ccccCCCC--------
Q 003871 667 TLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINL---------TAYAQPGT-------- 728 (790)
Q Consensus 667 ~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~dg~i~vwd~~~~~~~~~~~~---------~~~~~~gh-------- 728 (790)
+++.+..+.. |...|.+++|+|++ ++|++++.||.|++||+.++........ ..+.+.+.
T Consensus 294 ~~~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (416)
T 2pm9_A 294 SAEQLSQFPA--RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKP 371 (416)
T ss_dssp SCCEEEEEEC--SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCC
T ss_pred CCccceeecC--CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccc
Confidence 9999988865 68899999999999 8999999999999999987653221100 00000010
Q ss_pred ----------cccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 729 ----------ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 729 ----------~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
+...+. +++|+| +|++||+++.||+|+||++.+.
T Consensus 372 ~~~~~~~~~~~~~~~~--~~~~s~-dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 372 SVFHLQAPTWYGEPSP--AAHWAF-GGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CSSCCCCCSTTCCCSC--CCEEET-TTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccCCccccCCcc--ceEEee-CCeEEEEeCCCCeEEEEEeccC
Confidence 244555 899999 8999999999999999999875
No 32
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.9e-38 Score=336.43 Aligned_cols=291 Identities=10% Similarity=0.069 Sum_probs=230.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccC------CCceEeeeccccCCCCceeeeeccCCCCCCc
Q 003871 370 QEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKS------LEKSVNLKLQLINEPSECRTLLLPDNSFGGR 443 (790)
Q Consensus 370 l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~------d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~ 443 (790)
..+|...| ++++|| |||++| |+|+. |+.|++|+............ ...+|...
T Consensus 38 p~~H~~~V-------~~v~fS-------pDG~~l----as~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---~~~~~~~~ 96 (357)
T 4g56_B 38 PACMEVQI-------GAVRYR-------RDGALL----LAASSLSSRTWGGSIWVFKDPEGAPNESLCT---AGVQTEAG 96 (357)
T ss_dssp --CCCSEE-------EEEEEC-------SSSCEE----EEEECSSSSSCCEEEEEESSCC---CGGGCS---EEEECSSC
T ss_pred cccccCCE-------EEEEEC-------CCCCEE----EEEcCCCCccccCeEEEEECCCCCcceeEec---ccCCCCCC
Confidence 34799998 999999 999999 99997 67788888764221111111 11258899
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEE
Q 003871 444 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 521 (790)
Q Consensus 444 V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s 521 (790)
|.+++|+|+++ +++++.||+|++||+.++... ........+|...|++++|+ +++|++
T Consensus 97 V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~-------------------~~~~~~~~~h~~~V~~v~~spdg~~l~s 156 (357)
T 4g56_B 97 VTDVAWVSEKG-ILVASDSGAVELWEILEKESL-------------------LVNKFAKYEHDDIVKTLSVFSDGTQAVS 156 (357)
T ss_dssp EEEEEEETTTE-EEEEETTSCEEEC---------------------------CCCCEEECCCSSCEEEEEECSSSSEEEE
T ss_pred EEEEEEcCCCC-EEEEECCCEEEEeecccccee-------------------EEEeeccCCCCCCEEEEEECCCCCEEEE
Confidence 99999999986 667888999999998765430 00000112689999999999 889999
Q ss_pred ec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEc--CCCCCEEEEEEeC
Q 003871 522 AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSL 596 (790)
Q Consensus 522 ~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~--~h~~~v~~l~~sp 596 (790)
++ |+.|++||+.+++.+..+.+|...|++++|+|++ .+++++.||+|++||+++++....+. .|...+.+++|+|
T Consensus 157 gs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp 236 (357)
T 4g56_B 157 GGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHP 236 (357)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECT
T ss_pred EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhh
Confidence 99 9999999999999999999999999999999998 88999999999999999988766543 4677899999999
Q ss_pred C-CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCC-CEEEEE-eCCcEEEEECCCCceeee
Q 003871 597 S-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHTSQ 673 (790)
Q Consensus 597 d-g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~-~~l~~~-~dg~I~iwd~~~~~~~~~ 673 (790)
+ +.++++|+.|+.|++||+++++. +. ...+|. ..|++++|+|++ ++|+++ .|++|+|||+++++++..
T Consensus 237 ~~~~~la~g~~d~~i~~wd~~~~~~-----~~-~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~ 307 (357)
T 4g56_B 237 EKDDTFACGDETGNVSLVNIKNPDS-----AQ-TSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD 307 (357)
T ss_dssp TSTTEEEEEESSSCEEEEESSCGGG-----CE-EECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred cccceEEEeecccceeEEECCCCcE-----eE-EEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence 7 57899999999999999998543 33 233555 689999999987 567774 899999999999988766
Q ss_pred ecCCCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCe
Q 003871 674 LVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 674 ~~~~~h~~~v~~l~~s~-dg~~l~sgs~dg~i~vwd~~~~~ 713 (790)
+ .|...|++++|+| |+++|++|+.||+|++|++.+..
T Consensus 308 ~---~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 308 L---SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp C---CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred C---CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 5 4789999999998 89999999999999999997643
No 33
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.5e-37 Score=332.99 Aligned_cols=286 Identities=14% Similarity=0.152 Sum_probs=238.3
Q ss_pred hhhhhhhccCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (790)
Q Consensus 318 ~~~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs 390 (790)
+...++.+|.+.|. +++|+|| +.|++|+ +||..+++.+ ..+..|...| .+++|+
T Consensus 46 ~~~~~l~gH~~~v~--~~~~s~d~~~l~s~s~Dg~v~--iWd~~~~~~~--------~~~~~~~~~v-------~~~~~s 106 (340)
T 1got_B 46 RTRRTLRGHLAKIY--AMHWGTDSRLLLSASQDGKLI--IWDSYTTNKV--------HAIPLRSSWV-------MTCAYA 106 (340)
T ss_dssp CEEEEECCCSSCEE--EEEECTTSSEEEEEETTTEEE--EEETTTCCEE--------EEEECSSSCE-------EEEEEC
T ss_pred hhheeecCCCCceE--EEEECCCCCEEEEEeCCCcEE--EEECCCCCcc--------eEeecCCccE-------EEEEEC
Confidence 44567889999988 9999999 8899999 9999999887 7888899998 999999
Q ss_pred CCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 003871 391 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 470 (790)
Q Consensus 391 ~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~ 470 (790)
|+|+++ ++|+.|+.+++|++........... .+ .+|.+.|.++.|++++. +++++.|++|++||
T Consensus 107 -------~~~~~l----~s~~~d~~v~iw~~~~~~~~~~~~~-~~--~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd- 170 (340)
T 1got_B 107 -------PSGNYV----ACGGLDNICSIYNLKTREGNVRVSR-EL--AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWD- 170 (340)
T ss_dssp -------TTSSEE----EEEETTCEEEEEETTTCSBSCEEEE-EE--ECCSSCEEEEEEEETTE-EEEEETTSCEEEEE-
T ss_pred -------CCCCEE----EEEeCCCeEEEEECccCCCcceeEE-Ee--cCCCccEEEEEECCCCc-EEEEECCCcEEEEE-
Confidence 999999 9999999999999964110011111 11 25677777777776654 66666666655554
Q ss_pred CCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEE
Q 003871 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATY 550 (790)
Q Consensus 471 ~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~ 550 (790)
+.+++.+..+.+|...|.+
T Consensus 171 -------------------------------------------------------------~~~~~~~~~~~~h~~~v~~ 189 (340)
T 1got_B 171 -------------------------------------------------------------IETGQQTTTFTGHTGDVMS 189 (340)
T ss_dssp -------------------------------------------------------------TTTTEEEEEECCCSSCEEE
T ss_pred -------------------------------------------------------------CCCCcEEEEEcCCCCceEE
Confidence 4456677778889999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeee
Q 003871 551 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 629 (790)
Q Consensus 551 l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~ 629 (790)
++|+|++ ++++|+.|++|++||++++.....+.+|...|++++|+|++++|++|+.|++|++||+++++.. ..+
T Consensus 190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~-----~~~ 264 (340)
T 1got_B 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-----MTY 264 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----EEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE-----EEE
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999985432 212
Q ss_pred ccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 630 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 630 ~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
. +......|++++|+|+|++|+++ .|+.|++||+.+++.+..+.+ |...|.+++|+|+|++|++|+.||.|++||
T Consensus 265 ~--~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~--h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 265 S--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG--HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp C--CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred c--cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec--CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 1 11111479999999999999995 899999999999999888864 789999999999999999999999999996
No 34
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-36 Score=325.12 Aligned_cols=293 Identities=16% Similarity=0.166 Sum_probs=242.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSREST-SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVR 446 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~d-g~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~ 446 (790)
.+|+||.+.| ++++|+ |+ +++| |||+.|++|+|||+.............+ .+|...|.+
T Consensus 32 ~tL~GH~~~V-------~~v~~s-------p~~~~~l----~S~s~D~~i~vWd~~~~~~~~~~~~~~l--~~h~~~V~~ 91 (340)
T 4aow_A 32 GTLKGHNGWV-------TQIATT-------PQFPDMI----LSASRDKTIIMWKLTRDETNYGIPQRAL--RGHSHFVSD 91 (340)
T ss_dssp EEECCCSSCE-------EEEEEC-------TTCTTEE----EEEETTSCEEEEEECCSSSCSEEEEEEE--CCCSSCEEE
T ss_pred EEECCccCCE-------EEEEEe-------CCCCCEE----EEEcCCCeEEEEECCCCCcccceeeEEE--eCCCCCEEE
Confidence 6799999999 999999 87 5788 9999999999999974221111111122 479999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-
Q 003871 447 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS- 523 (790)
Q Consensus 447 l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s- 523 (790)
++|+|+|++|++++.|+.|++|+...... ... ...+...+....++ +.++++++
T Consensus 92 ~~~s~dg~~l~s~~~d~~i~~~~~~~~~~--------------------~~~---~~~~~~~~~~~~~~~~~~~l~s~s~ 148 (340)
T 4aow_A 92 VVISSDGQFALSGSWDGTLRLWDLTTGTT--------------------TRR---FVGHTKDVLSVAFSSDNRQIVSGSR 148 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEE--------------------EEE---EECCSSCEEEEEECTTSSCEEEEET
T ss_pred EEECCCCCEEEEEcccccceEEeecccce--------------------eee---ecCCCCceeEEEEeecCccceeecC
Confidence 99999999999999999999999775432 111 11466777888888 88899998
Q ss_pred CCeEEEEECCCCcEE-EEEcCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCC
Q 003871 524 GGKISIFSLETFQTL-ATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 599 (790)
Q Consensus 524 dg~I~vwd~~~~~~~-~~~~~~~~~v~~l~~s~~g---~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~ 599 (790)
|+.+++||....... ....+|...+.+++|++++ .+++++.|+.|++||+.+++.+..+.+|.+.|++++|+|+++
T Consensus 149 d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~ 228 (340)
T 4aow_A 149 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 228 (340)
T ss_dssp TSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred CCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC
Confidence 999999999765443 3345788999999999887 788999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecC---
Q 003871 600 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP--- 676 (790)
Q Consensus 600 ~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~--- 676 (790)
+|++|+.|++|++||+++++. +..+. ++ ..+.+++|+|++.+++++.|+.|++||++++..+..+..
T Consensus 229 ~l~s~s~Dg~i~iwd~~~~~~-----~~~~~-~~----~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 298 (340)
T 4aow_A 229 LCASGGKDGQAMLWDLNEGKH-----LYTLD-GG----DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVI 298 (340)
T ss_dssp EEEEEETTCEEEEEETTTTEE-----EEEEE-CS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC--
T ss_pred EEEEEeCCCeEEEEEeccCce-----eeeec-CC----ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccce
Confidence 999999999999999998543 33222 33 479999999999888888999999999998877766542
Q ss_pred ----CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003871 677 ----DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 677 ----~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~ 713 (790)
..|...|++++|+|||++|++|+.||.|+|||+.+|.
T Consensus 299 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 299 STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -----CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 2467899999999999999999999999999999985
No 35
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.5e-37 Score=328.38 Aligned_cols=291 Identities=16% Similarity=0.195 Sum_probs=236.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCC-CCCCCcccceeccCCCceEeeeccccCCC---CceeeeeccCC
Q 003871 368 PNQEGRPLDASSGDDSNDSSCF-----NDNNQSRES-TSLPDADSAVCAKSLEKSVNLKLQLINEP---SECRTLLLPDN 438 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~f-----s~~~~~~s~-dg~~la~~~at~s~d~~i~iwd~~~~~~~---~~~~~~~l~~~ 438 (790)
.++.||.+.| ++++| + + |+++| +||+.|++|++||+...... +.... .+ .
T Consensus 15 ~~l~gH~~~V-------~~~~~~~s~~~-------~~d~~~l----~sgs~D~~v~iWd~~~~~~~~~~~~~~~-~l--~ 73 (343)
T 2xzm_R 15 GILEGHSDWV-------TSIVAGFSQKE-------NEDSPVL----ISGSRDKTVMIWKLYEEEQNGYFGIPHK-AL--T 73 (343)
T ss_dssp EEEECCSSCE-------EEEEECCCSST-------TCCCCEE----EEEETTSCEEEEEECSSCCSSBSEEEEE-EE--C
T ss_pred eeeccchhhh-------hheeeEEEeec-------CCCCCEE----EEEcCCCEEEEEECCcCCcccccccccc-hh--c
Confidence 6788999999 99988 4 4 89999 99999999999999642111 11111 12 4
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
+|...|.+++|+|++.++++++.|++|++||+.++.. .... .+|...|.+++|+ +
T Consensus 74 ~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~---------------------~~~~--~~h~~~v~~v~~sp~~ 130 (343)
T 2xzm_R 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTT---------------------YKRF--VGHQSEVYSVAFSPDN 130 (343)
T ss_dssp CCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCE---------------------EEEE--ECCCSCEEEEEECSST
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcE---------------------EEEE--cCCCCcEEEEEECCCC
Confidence 7999999999999999999999999999999876433 1111 2699999999999 8
Q ss_pred cEEEEec-CCeEEEEECCCCcEEEEEc---CCCCCeEEEEEcCCC-----------eEEEEeCCCcEEEEeCCCCceEEE
Q 003871 517 SHLFSAS-GGKISIFSLETFQTLATFA---NPPPIATYFILLPQD-----------LFAFGFDDSSILVHCPCTKKTKAK 581 (790)
Q Consensus 517 ~~l~s~s-dg~I~vwd~~~~~~~~~~~---~~~~~v~~l~~s~~g-----------~l~sgs~dg~I~iwd~~~~~~~~~ 581 (790)
++|++++ |+.|++||+. +....... .|...|.+++|+|++ ++++|+.||.|++||. +++....
T Consensus 131 ~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~ 208 (343)
T 2xzm_R 131 RQILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYT 208 (343)
T ss_dssp TEEEEEETTSCEEEEESS-SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEE
T ss_pred CEEEEEcCCCEEEEEecc-CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEE
Confidence 8999998 9999999998 44444433 678889999999873 6999999999999994 5677778
Q ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEE
Q 003871 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQID 661 (790)
Q Consensus 582 l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~ 661 (790)
+.+|...|++++|+|+|++|++|+.|++|++||+.... .....+..+ ..|.+++|+|++.+++++.|+.|+
T Consensus 209 ~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~----~~~~~~~~~-----~~v~~v~~sp~~~~la~~~d~~v~ 279 (343)
T 2xzm_R 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT----YPQREFDAG-----STINQIAFNPKLQWVAVGTDQGVK 279 (343)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS----SCSEEEECS-----SCEEEEEECSSSCEEEEEESSCEE
T ss_pred EcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc----ccceeecCC-----CcEEEEEECCCCCEEEEECCCCEE
Confidence 89999999999999999999999999999999995422 112212122 479999999999999888999999
Q ss_pred EEECCCCceee--eecC---------CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003871 662 VYEAPTLNHTS--QLVP---------DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 662 iwd~~~~~~~~--~~~~---------~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~ 713 (790)
+||+.+++... .+.. ..|...|.+++|+|+|++|++|+.||.|++|++.++.
T Consensus 280 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 280 IFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 99998776544 3321 1367789999999999999999999999999987653
No 36
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.3e-37 Score=367.32 Aligned_cols=362 Identities=14% Similarity=0.165 Sum_probs=296.2
Q ss_pred hhhhhhccCCCccccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 319 LLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFND 391 (790)
Q Consensus 319 ~~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~ 391 (790)
..+.+.+|.+.|. +++|+|+ +.|+.|+ +||..+|+.+ ..+.+|...| ++++|+
T Consensus 5 ~~~~~~~h~~~v~--~i~~sp~~~~la~~~~~g~v~--iwd~~~~~~~--------~~~~~~~~~v-------~~~~~s- 64 (814)
T 3mkq_A 5 IKKTFSNRSDRVK--GIDFHPTEPWVLTTLYSGRVE--IWNYETQVEV--------RSIQVTETPV-------RAGKFI- 64 (814)
T ss_dssp CEEEEEEECSCEE--EEEECSSSSEEEEEETTSEEE--EEETTTTEEE--------EEEECCSSCE-------EEEEEE-
T ss_pred cceeeecCCCceE--EEEECCCCCEEEEEeCCCEEE--EEECCCCceE--------EEEecCCCcE-------EEEEEe-
Confidence 3566789999988 9999999 6799999 9999999887 8888999999 999999
Q ss_pred CCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 003871 392 NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 471 (790)
Q Consensus 392 ~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~ 471 (790)
|||+++ ++|+.||.|++||+.. ......+. +|.+.|++++|+|+|++|++++.||.|++|++.
T Consensus 65 ------~~~~~l----~~~~~dg~i~vw~~~~---~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 127 (814)
T 3mkq_A 65 ------ARKNWI----IVGSDDFRIRVFNYNT---GEKVVDFE----AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127 (814)
T ss_dssp ------GGGTEE----EEEETTSEEEEEETTT---CCEEEEEE----CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGG
T ss_pred ------CCCCEE----EEEeCCCeEEEEECCC---CcEEEEEe----cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECC
Confidence 999999 9999999999999973 23333332 699999999999999999999999999999987
Q ss_pred CCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCcEEEEEcCCC-C
Q 003871 472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPP-P 546 (790)
Q Consensus 472 ~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~-~ 546 (790)
++.. .... ..+|...|.+++|+ ++.+++++ ||.|++||+.+++....+..+. .
T Consensus 128 ~~~~--------------------~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~ 185 (814)
T 3mkq_A 128 NNWA--------------------LEQT--FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185 (814)
T ss_dssp GTSE--------------------EEEE--EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTT
T ss_pred CCce--------------------EEEE--EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCC
Confidence 5322 1111 12689999999998 56888888 9999999999888777776554 7
Q ss_pred CeEEEEEcC--CC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeec
Q 003871 547 IATYFILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 623 (790)
Q Consensus 547 ~v~~l~~s~--~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~ 623 (790)
.+.+++|+| ++ .+++|+.||.|++||+.+++.+..+.+|...|.+++|+|+++++++++.||.|++||+.+++.
T Consensus 186 ~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~--- 262 (814)
T 3mkq_A 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV--- 262 (814)
T ss_dssp CCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE---
T ss_pred CEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---
Confidence 899999999 88 999999999999999999999999999999999999999999999999999999999998543
Q ss_pred eeeeeeccCCCCCCCCeEEEEEeCCCC--EEEEEeCCcEEEEECCCCceeeeecC-------------------------
Q 003871 624 KFLHSFQTGLVPETTIVNHIQFHPDQI--HLLSIHEGQIDVYEAPTLNHTSQLVP------------------------- 676 (790)
Q Consensus 624 ~~l~~~~~~~~~~~~~v~~i~~sp~~~--~l~~~~dg~I~iwd~~~~~~~~~~~~------------------------- 676 (790)
+..+ ..+. ..+.+++|+|++. +++++.++.+.+|++..+.....+.+
T Consensus 263 --~~~~-~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 336 (814)
T 3mkq_A 263 --EKTL-NVGL---ERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGN 336 (814)
T ss_dssp --EEEE-CCSS---SSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSC
T ss_pred --EEEe-ecCC---CcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccc
Confidence 3322 2333 5899999999987 57778899999999765432221110
Q ss_pred ----------------CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEE
Q 003871 677 ----------------DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 740 (790)
Q Consensus 677 ----------------~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 740 (790)
..+...+.+++|+|+|+++++++ |+.+.+|++....... .+.+. +++|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~-------------~~~i~--~~~~ 400 (814)
T 3mkq_A 337 EEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA-------------FGKCQ--DFVW 400 (814)
T ss_dssp CCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE-------------EEECS--EEEE
T ss_pred cccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC-------------CCceE--EEEE
Confidence 11345688999999999999998 8999999987654322 12344 7888
Q ss_pred ecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 741 HPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 741 sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
+| +++++|+++.||.|++|+...+
T Consensus 401 sp-dg~~la~~~~~g~v~l~~~~~~ 424 (814)
T 3mkq_A 401 GP-DSNSYALIDETGQIKYYKNFKE 424 (814)
T ss_dssp CT-TSSCEEEECTTCCEEEEETTEE
T ss_pred eC-CCCeEEEEeCCCcEEEEECCCC
Confidence 88 7888888888888888875444
No 37
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5e-37 Score=328.52 Aligned_cols=288 Identities=15% Similarity=0.102 Sum_probs=229.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeecccc--------CCCCceeeeeccCCCCCCc
Q 003871 372 GRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLI--------NEPSECRTLLLPDNSFGGR 443 (790)
Q Consensus 372 ~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~--------~~~~~~~~~~l~~~~h~~~ 443 (790)
.|...| .+++|+ |||+++ ++++ |+++++||.... +....+.. . ..|...
T Consensus 28 ~~~~~v-------~~~~fs-------~dG~~l----~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~-~---~~~~~~ 84 (344)
T 4gqb_B 28 CMERQL-------EAARYR-------SDGALL----LGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSA-G---VQTEAG 84 (344)
T ss_dssp SCCSEE-------EEEEEC-------TTSCEE----EEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSE-E---EEESSC
T ss_pred cccCCE-------EEEEEC-------CCCCEE----EEEe-CCceEEeeceeeeeccccccCCcceeee-e---eccCCC
Confidence 466667 899999 999998 8877 789999984210 00011111 1 135678
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEE
Q 003871 444 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 521 (790)
Q Consensus 444 V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s 521 (790)
|.+++|+|++ .+++++.||+|++||+.++.. ..... ....+|...|++++|+ +++|++
T Consensus 85 v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~------------------~~~~~-~~~~~H~~~V~~v~~spdg~~l~s 144 (344)
T 4gqb_B 85 VADLTWVGER-GILVASDSGAVELWELDENET------------------LIVSK-FCKYEHDDIVSTVSVLSSGTQAVS 144 (344)
T ss_dssp EEEEEEETTT-EEEEEETTSEEEEEEECTTSS------------------CEEEE-EEEECCSSCEEEEEECTTSSEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCEEEEEeccCCCc------------------eeEee-ccccCCCCCEEEEEECCCCCEEEE
Confidence 9999999996 588999999999999987543 00111 1122799999999999 899999
Q ss_pred ec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEc--CCCCCEEEEEEeC
Q 003871 522 AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSL 596 (790)
Q Consensus 522 ~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~--~h~~~v~~l~~sp 596 (790)
|+ |++|++||+.+++++..+.+|...|.+++|+|++ .+++|+.|++|++||+++++....+. .|...+.+++|+|
T Consensus 145 gs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p 224 (344)
T 4gqb_B 145 GSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP 224 (344)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECS
T ss_pred EeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecC
Confidence 99 9999999999999999999999999999999998 78999999999999999998887764 3566799999999
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCC-CEEEE-EeCCcEEEEECCCCceeee
Q 003871 597 -SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQ 673 (790)
Q Consensus 597 -dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~-~~l~~-~~dg~I~iwd~~~~~~~~~ 673 (790)
+++++++|+.|++|++||+++++. +. ...+|. ..|++++|+|++ ++|++ +.|++|++||+.+++++.
T Consensus 225 ~~~~~l~sg~~dg~v~~wd~~~~~~-----~~-~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~- 294 (344)
T 4gqb_B 225 QQSEVFVFGDENGTVSLVDTKSTSC-----VL-SSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR- 294 (344)
T ss_dssp SCTTEEEEEETTSEEEEEESCC--C-----CE-EEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-
T ss_pred CCCcceEEeccCCcEEEEECCCCcE-----EE-EEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-
Confidence 567899999999999999998543 33 234566 699999999998 56777 489999999999887654
Q ss_pred ecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCCeE
Q 003871 674 LVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLEL 714 (790)
Q Consensus 674 ~~~~~h~~~v~~l~~s~dg~-~l~sgs~dg~i~vwd~~~~~~ 714 (790)
+. .|...|++++|+|+++ +|++|+.|++|++|++.+..+
T Consensus 295 ~~--~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 295 SQ--AHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred Ec--CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 33 4799999999999986 577999999999999987643
No 38
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-36 Score=321.96 Aligned_cols=291 Identities=16% Similarity=0.133 Sum_probs=224.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
+|.+.|++++|+|+ +|++++.|++|++|++..+.. .........+|...|.+++|+ +
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-------------------~~~~~~~~~~h~~~v~~v~~sp~~ 70 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-------------------TLIDVLDETAHKKAIRSVAWRPHT 70 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-------------------EEEEEECTTCCCSCEEEEEECTTS
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-------------------EEEEEEecCCccCCEEEEEECCCC
Confidence 79999999999998 899999999999999875321 111111112499999999999 8
Q ss_pred cEEEEec-CCeEEEEECCC-------CcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC----ceEEEEc
Q 003871 517 SHLFSAS-GGKISIFSLET-------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK----KTKAKLK 583 (790)
Q Consensus 517 ~~l~s~s-dg~I~vwd~~~-------~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~----~~~~~l~ 583 (790)
++|++++ |++|++||+.. .+.+..+.+|...|.+++|+|+| +|++|+.|++|++||+... +++..+.
T Consensus 71 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence 8999999 99999999853 45677888999999999999999 9999999999999999432 4677889
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC--CCEEEEE-eCCcE
Q 003871 584 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSI-HEGQI 660 (790)
Q Consensus 584 ~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~--~~~l~~~-~dg~I 660 (790)
+|...|.+++|+|++++|++|+.|++|++||..++.. ..+. ...+|. +.|.+++|+|+ +.+|+++ .|++|
T Consensus 151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~---~~~~-~~~~h~---~~v~~~~~~~~~~~~~l~s~s~D~~v 223 (330)
T 2hes_X 151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW---ECVA-VLNGHE---GTVWSSDFDKTEGVFRLCSGSDDSTV 223 (330)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---EEEE-EECCCS---SCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe---eEEE-EccCCC---CcEEEEEecCCCCeeEEEEEeCCCeE
Confidence 9999999999999999999999999999999876431 2333 344666 79999999998 6788884 89999
Q ss_pred EEEECCCC--------ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccc
Q 003871 661 DVYEAPTL--------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 732 (790)
Q Consensus 661 ~iwd~~~~--------~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~ 732 (790)
++||+.++ .+...+. ..|...|.+++|++++ +|++++.||.|++||..+++....... ..+|....
T Consensus 224 ~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~----~~~h~~~~ 297 (330)
T 2hes_X 224 RVWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR----ALCHGVYE 297 (330)
T ss_dssp EEEEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE----SCTTTTSC
T ss_pred EEEEecCCCccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc----ccccccce
Confidence 99998754 2333333 2378899999999765 899999999999999988753211110 11453335
Q ss_pred cceEEEEEecC-CCCEEEEEeCCCcEEEEecCCC
Q 003871 733 LYPLVIAAHPL-EPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 733 v~~~~v~~sp~-d~~~las~s~Dg~i~iW~~~~~ 765 (790)
|+ +++|+|. ++.+||+|+.||+|+||++.+.
T Consensus 298 v~--~v~~~~~~~~~~las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 298 IN--VVKWLELNGKTILATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp EE--EEEEC-----CCEEEEETTSEEEEEEC---
T ss_pred EE--EEEEecCCCceEEEEecCCCcEEEEEeccC
Confidence 66 9999994 4789999999999999998653
No 39
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.3e-36 Score=321.25 Aligned_cols=294 Identities=16% Similarity=0.191 Sum_probs=233.8
Q ss_pred CCCCCceEEEEE-----cC-CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEE
Q 003871 438 NSFGGRVVRLIY-----SH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC 511 (790)
Q Consensus 438 ~~h~~~V~~l~~-----sp-dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~ 511 (790)
.+|.+.|++++| ++ ++++|++|+.|++|++||+..... ....+.... ...+|...|.+
T Consensus 18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~--------------~~~~~~~~~--~l~~h~~~V~~ 81 (343)
T 2xzm_R 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQ--------------NGYFGIPHK--ALTGHNHFVSD 81 (343)
T ss_dssp ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCC--------------SSBSEEEEE--EECCCSSCEEE
T ss_pred ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCc--------------ccccccccc--hhccCCCceEE
Confidence 379999999999 77 999999999999999999875432 000111111 12379999999
Q ss_pred EEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEc---C
Q 003871 512 FALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK---G 584 (790)
Q Consensus 512 l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~---~ 584 (790)
++|+ +.++++++ |++|++||+.+++.+..+.+|...|.+++|+|++ .+++|+.|++|++||+.. ....... +
T Consensus 82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~ 160 (343)
T 2xzm_R 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKEN 160 (343)
T ss_dssp EEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTS
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccC
Confidence 9999 88999999 9999999999999999999999999999999999 999999999999999984 3333333 6
Q ss_pred CCCCEEEEEEeCCC----------CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE
Q 003871 585 HQNRITCLAYSLSL----------NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (790)
Q Consensus 585 h~~~v~~l~~spdg----------~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~ 654 (790)
|...|.+++|+|++ .++++++.|++|++||... .... ...+|. ..|.+++|+|+|++|++
T Consensus 161 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~-~~~~h~---~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF------QIRY-TFKAHE---SNVNHLSISPNGKYIAT 230 (343)
T ss_dssp CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT------EEEE-EEECCS---SCEEEEEECTTSSEEEE
T ss_pred CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC------ceeE-EEcCcc---ccceEEEECCCCCEEEE
Confidence 88999999999987 7999999999999999543 2222 233565 68999999999999999
Q ss_pred E-eCCcEEEEECCC-CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE--Eecccc----ccCC
Q 003871 655 I-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC--QINLTA----YAQP 726 (790)
Q Consensus 655 ~-~dg~I~iwd~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~--~~~~~~----~~~~ 726 (790)
+ .|+.|++||+.. ......+. +...|.+++|+|+++++++| .|+.|++||+.+++... .+.... ....
T Consensus 231 gs~dg~v~iwd~~~~~~~~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 231 GGKDKKLLIWDILNLTYPQREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp EETTCEEEEEESSCCSSCSEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred EcCCCeEEEEECCCCcccceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 5 899999999954 44444442 35679999999999987655 58889999998876543 332110 0112
Q ss_pred CCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 727 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 727 gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
|| ...+. +++|+| +|++|++|+.||+|++|++.+++
T Consensus 307 ~~-~~~v~--~~~~sp-~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 307 GK-NPQCT--SLAWNA-LGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CS-CCCEE--EEEECS-SSCCEEEEETTSEEEEEEEEEEE
T ss_pred CC-CCceE--EEEECC-CCCeEEEecCCceEEEEEEEccC
Confidence 44 34455 999999 89999999999999999997754
No 40
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=323.74 Aligned_cols=300 Identities=12% Similarity=0.106 Sum_probs=228.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
.++.+|.+.| ++++|+ |+ ++ |+|+.|++|++||+... ...... .+...+|...|.++
T Consensus 8 ~~~~~h~~~v-------~~~~~s-------~~--~l----as~~~D~~i~lw~~~~~--~~~~~~-~~~~~~h~~~v~~v 64 (330)
T 2hes_X 8 KSLKLYKEKI-------WSFDFS-------QG--IL----ATGSTDRKIKLVSVKYD--DFTLID-VLDETAHKKAIRSV 64 (330)
T ss_dssp EEEECCSSCE-------EEEEEE-------TT--EE----EEEESSSCEEEEECSSS--CCEEEE-EECTTCCCSCEEEE
T ss_pred eeeccCCCce-------eeeccC-------CC--EE----EEEcCCCEEEEEEecCC--CeEEEE-EEecCCccCCEEEE
Confidence 6788999999 999998 66 77 99999999999999631 011221 12122499999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-C
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 524 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-d 524 (790)
+|+|++++|++++.|++|++|+...... .......... ..+|...|.+++|+ +++|++++ |
T Consensus 65 ~~sp~~~~las~s~D~~v~iw~~~~~~~--------------~~~~~~~~~~--~~~h~~~V~~v~~sp~g~~las~s~D 128 (330)
T 2hes_X 65 AWRPHTSLLAAGSFDSTVSIWAKEESAD--------------RTFEMDLLAI--IEGHENEVKGVAWSNDGYYLATCSRD 128 (330)
T ss_dssp EECTTSSEEEEEETTSCEEEEEC---------------------CCCEEEEE--EC----CEEEEEECTTSCEEEEEETT
T ss_pred EECCCCCEEEEEeCCCcEEEEEcccCcC--------------ccccceeEEE--EcCCCCcEEEEEECCCCCEEEEEeCC
Confidence 9999999999999999999999864211 0001112221 23799999999999 88999999 9
Q ss_pred CeEEEEECCC----CcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC--ceEEEEcCCCCCEEEEEEeCC
Q 003871 525 GKISIFSLET----FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCLAYSLS 597 (790)
Q Consensus 525 g~I~vwd~~~----~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~--~~~~~l~~h~~~v~~l~~spd 597 (790)
++|++||+.. .+++..+.+|...|.+++|+|++ +|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+
T Consensus 129 ~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 208 (330)
T 2hes_X 129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT 208 (330)
T ss_dssp SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCS
T ss_pred CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCC
Confidence 9999999943 25677889999999999999999 9999999999999998776 678889999999999999998
Q ss_pred --CCEEEEEeCCCcEEEEECCCCcee---eceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCc--
Q 003871 598 --LNVLVSSGADAQLCVWDAVGWKKL---CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN-- 669 (790)
Q Consensus 598 --g~~l~s~s~dg~I~vwd~~~~~~~---~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~-- 669 (790)
+.+|++|+.|++|++||+.++... .......+...|. ..|.+++|++++ +|++ +.||.|++||..+++
T Consensus 209 ~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~ 284 (330)
T 2hes_X 209 EGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK 284 (330)
T ss_dssp SSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEE
T ss_pred CCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceE
Confidence 778999999999999998763210 0122232333365 699999999877 5555 699999999998774
Q ss_pred eeeeecCCCCCC-CeEEEEEec--CCCEEEEEEcCCeEEEEECCC
Q 003871 670 HTSQLVPDKMDL-PITYATYSC--DGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 670 ~~~~~~~~~h~~-~v~~l~~s~--dg~~l~sgs~dg~i~vwd~~~ 711 (790)
...... ..|.. .|.+++|+| ++++|++|+.||+|++||+.+
T Consensus 285 ~~~~~~-~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 285 VFAKRA-LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEES-CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEeccc-cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 233332 23555 899999999 789999999999999999865
No 41
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-36 Score=320.05 Aligned_cols=285 Identities=14% Similarity=0.166 Sum_probs=239.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEE
Q 003871 367 KPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVR 446 (790)
Q Consensus 367 ~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~ 446 (790)
++++.+|.+.| ++++|+ |||+++ ++|+.||+|++||+.. ......+. +|..+|.+
T Consensus 6 ~~~~~~h~~~V-------~~~~fs-------p~~~~l----~s~~~dg~v~lWd~~~---~~~~~~~~----~~~~~v~~ 60 (304)
T 2ynn_A 6 KKTFSNRSDRV-------KGIDFH-------PTEPWV----LTTLYSGRVELWNYET---QVEVRSIQ----VTETPVRA 60 (304)
T ss_dssp EEEEEEECSCE-------EEEEEC-------SSSSEE----EEEETTSEEEEEETTT---TEEEEEEE----CCSSCEEE
T ss_pred EEeecCCCCce-------EEEEEC-------CCCCEE----EEEcCCCcEEEEECCC---CceeEEee----ccCCcEEE
Confidence 37788999999 999999 999999 9999999999999973 22333333 58999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-
Q 003871 447 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS- 523 (790)
Q Consensus 447 l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s- 523 (790)
++|+|++++|++|+.|++|++||+.++.. +.. ..+|...|.+++|+ +.++++|+
T Consensus 61 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~--------------------~~~---~~~h~~~v~~~~~~~~~~~l~sgs~ 117 (304)
T 2ynn_A 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEK--------------------VVD---FEAHPDYIRSIAVHPTKPYVLSGSD 117 (304)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEETTTCCE--------------------EEE---EECCSSCEEEEEECSSSSEEEEEET
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCcE--------------------EEE---EeCCCCcEEEEEEcCCCCEEEEECC
Confidence 99999999999999999999999876443 111 12699999999999 88999999
Q ss_pred CCeEEEEECCCC-cEEEEEcCCCCCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCceEEEEc-CCCCCEEEEEEeC--C
Q 003871 524 GGKISIFSLETF-QTLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSL--S 597 (790)
Q Consensus 524 dg~I~vwd~~~~-~~~~~~~~~~~~v~~l~~s~~-g-~l~sgs~dg~I~iwd~~~~~~~~~l~-~h~~~v~~l~~sp--d 597 (790)
|++|++||++++ .....+.+|...|.+++|+|+ + .+++|+.|++|++||+.++.....+. +|...+..+.|+| +
T Consensus 118 D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 197 (304)
T 2ynn_A 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197 (304)
T ss_dssp TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTT
T ss_pred CCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCC
Confidence 999999999887 556778899999999999994 5 99999999999999998887665554 5668899999987 7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecC
Q 003871 598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVP 676 (790)
Q Consensus 598 g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~ 676 (790)
+++|++|+.|++|++||+++++ .+. ...+|. ..|.+++|+|++.+|+++ .||.|++||+.+++++.++..
T Consensus 198 ~~~l~s~s~D~~i~iWd~~~~~-----~~~-~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~ 268 (304)
T 2ynn_A 198 KPYMITASDDLTIKIWDYQTKS-----CVA-TLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268 (304)
T ss_dssp CCEEEEEETTSEEEEEETTTTE-----EEE-EEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred CCEEEEEcCCCeEEEEeCCCCc-----cce-eeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccC
Confidence 7899999999999999999854 333 234566 699999999999999995 899999999999999998864
Q ss_pred CCCCCCeEEEEEecCCC--EEEEEEcCCeEEEEECCC
Q 003871 677 DKMDLPITYATYSCDGK--CIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 677 ~~h~~~v~~l~~s~dg~--~l~sgs~dg~i~vwd~~~ 711 (790)
|...+.+++|+|++. ++++|+ |+.+.+|++.+
T Consensus 269 --~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 269 --GLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN 302 (304)
T ss_dssp --SSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred --CCccEEEEEECCCCCceEEEEec-CCceEEEEecc
Confidence 578999999999875 567666 45577787764
No 42
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.7e-38 Score=374.95 Aligned_cols=383 Identities=11% Similarity=0.072 Sum_probs=313.5
Q ss_pred CcccccccccchhhhhchhhhhcCccccccccCccccchhhhhhhhccCCCccccccccCCC-------CCCCcceeeec
Q 003871 279 QKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDF 351 (790)
Q Consensus 279 ~~l~s~~~d~v~l~~~~~~~~~~~~~la~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd-------~~d~~i~l~iw 351 (790)
.++|+++.| |.|+|||+.+++.+..+.+|...+. +++|+|+ +.|+.|+ +|
T Consensus 26 ~~la~~~~~-------------------g~v~iwd~~~~~~~~~~~~~~~~v~--~~~~s~~~~~l~~~~~dg~i~--vw 82 (814)
T 3mkq_A 26 PWVLTTLYS-------------------GRVEIWNYETQVEVRSIQVTETPVR--AGKFIARKNWIIVGSDDFRIR--VF 82 (814)
T ss_dssp SEEEEEETT-------------------SEEEEEETTTTEEEEEEECCSSCEE--EEEEEGGGTEEEEEETTSEEE--EE
T ss_pred CEEEEEeCC-------------------CEEEEEECCCCceEEEEecCCCcEE--EEEEeCCCCEEEEEeCCCeEE--EE
Confidence 677888877 8999999999999999999999988 9999999 7899999 99
Q ss_pred cCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCcee
Q 003871 352 PTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECR 431 (790)
Q Consensus 352 d~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~ 431 (790)
|..+|+.+ ..+.+|.+.| ++++|+ |||+++ ++++.||.|++||+.. .....
T Consensus 83 ~~~~~~~~--------~~~~~~~~~v-------~~~~~s-------~~~~~l----~~~~~dg~i~vw~~~~---~~~~~ 133 (814)
T 3mkq_A 83 NYNTGEKV--------VDFEAHPDYI-------RSIAVH-------PTKPYV----LSGSDDLTVKLWNWEN---NWALE 133 (814)
T ss_dssp ETTTCCEE--------EEEECCSSCE-------EEEEEC-------SSSSEE----EEEETTSEEEEEEGGG---TSEEE
T ss_pred ECCCCcEE--------EEEecCCCCE-------EEEEEe-------CCCCEE----EEEcCCCEEEEEECCC---CceEE
Confidence 99999987 7888999999 999999 999999 9999999999999974 22333
Q ss_pred eeeccCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeE
Q 003871 432 TLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS 510 (790)
Q Consensus 432 ~~~l~~~~h~~~V~~l~~sp-dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~ 510 (790)
... .+|...|.+++|+| +++.+++++.||.|++||+.++.. ... ...++...+.
T Consensus 134 ~~~---~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~--------------------~~~--~~~~~~~~v~ 188 (814)
T 3mkq_A 134 QTF---EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--------------------NFT--LTTGQERGVN 188 (814)
T ss_dssp EEE---ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC--------------------SEE--EECCCTTCCC
T ss_pred EEE---cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc--------------------eeE--EecCCCCCEE
Confidence 222 36899999999999 899999999999999999875433 111 1124558899
Q ss_pred EEEec----CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcC
Q 003871 511 CFALR----GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG 584 (790)
Q Consensus 511 ~l~~s----~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~ 584 (790)
+++|+ +.++++++ ||.|++||+.+++.+..+.+|...|.+++|+|++ .+++|+.||.|++||+.+++.+..+..
T Consensus 189 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 268 (814)
T 3mkq_A 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268 (814)
T ss_dssp EEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec
Confidence 99997 67899988 8999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCCEEEEEEeCCCC--EEEEEeCCCcEEEEECCCCceeec-----eeeee-----------------------------
Q 003871 585 HQNRITCLAYSLSLN--VLVSSGADAQLCVWDAVGWKKLCS-----KFLHS----------------------------- 628 (790)
Q Consensus 585 h~~~v~~l~~spdg~--~l~s~s~dg~I~vwd~~~~~~~~~-----~~l~~----------------------------- 628 (790)
|...+.+++|+|+++ ++++++ ++.+.+|++..+..... ..+..
T Consensus 269 ~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (814)
T 3mkq_A 269 GLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSL 347 (814)
T ss_dssp SSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCC
T ss_pred CCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCcccee
Confidence 999999999999987 455554 67788898765321100 00000
Q ss_pred ---eccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEE
Q 003871 629 ---FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 705 (790)
Q Consensus 629 ---~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~ 705 (790)
....+. ..+.+++|+|+|++++++.++.+.+|++...... +...+.+++|+|+|+++++++.+|.|+
T Consensus 348 ~~~~~~~~~---~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~-------~~~~i~~~~~spdg~~la~~~~~g~v~ 417 (814)
T 3mkq_A 348 QTKELGSVD---VFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNK-------AFGKCQDFVWGPDSNSYALIDETGQIK 417 (814)
T ss_dssp CCEEECCCS---SCCSEEEECTTSSEEEEEETTEEEEEETTTTEEE-------EEEECSEEEECTTSSCEEEECTTCCEE
T ss_pred eeecCCCCc---cCCceeEECCCCCEEEEecCCEEEEEECcccccc-------CCCceEEEEEeCCCCeEEEEeCCCcEE
Confidence 001111 4688999999999999988999999998644332 135688999999999999999999999
Q ss_pred EEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCC---CEEEEEeCCCcEEEEecCCCccc
Q 003871 706 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 706 vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~---~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
+|+... +| ...+. +++|+| ++ .+|++++.||.|++||+.+++..
T Consensus 418 l~~~~~---------------~~-~~~v~--~~~~s~-dg~~~~~l~~~~~d~~v~~~d~~~~~~~ 464 (814)
T 3mkq_A 418 YYKNFK---------------EV-TSWSV--PMHSAI-DRLFSGALLGVKSDGFVYFFDWDNGTLV 464 (814)
T ss_dssp EEETTE---------------EC-TTCCC--CCSSCC-CEEECSSSEEEEETTEEEEECTTTCCEE
T ss_pred EEECCC---------------Cc-cceEE--cCCcCc-cceecceEEEEecCCEEEEEECCcCcEE
Confidence 996321 33 33455 888999 77 68899999999999999988754
No 43
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-37 Score=337.28 Aligned_cols=350 Identities=11% Similarity=0.070 Sum_probs=263.6
Q ss_pred ccCccccchhhhhhhhccCCCccccccccCCC--------CCCCcceeeeccC----CCcccccc--cccCCCCCCCC--
Q 003871 309 LKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPT----VSNLRYAS--SILTDKPNQEG-- 372 (790)
Q Consensus 309 i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd--------~~d~~i~l~iwd~----~~g~~~~~--~~~~~~~~l~~-- 372 (790)
+.+|+............|.+.|. +++|+|+ +.|+.|+ +||. .+++.++. ........+.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~~~~~l~~~~~dg~i~--iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 1r5m_A 27 DSSDDLDGFVKILKEIVKLDNIV--SSTWNPLDESILAYGEKNSVAR--LARIVETDQEGKKYWKLTIIAELRHPFALSA 102 (425)
T ss_dssp -------CCCEECEEEEECSCCS--EEEECSSCTTEEEEEETBTEEE--EEEEEEC------CEEEEEEEEEECCCCCC-
T ss_pred cccccchhhhhheeeeeccCceE--EEEECCCCCcEEEEecCCceEE--EEEEecccCCccccccccccccccccccccc
Confidence 34566644433333344557766 9999998 6789999 9999 88872000 00011122333
Q ss_pred ----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEE
Q 003871 373 ----RPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLI 448 (790)
Q Consensus 373 ----h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~ 448 (790)
|.+.| ++++|+ |||+++ ++|+.|+.|++||.. ......+ .+|...|.+++
T Consensus 103 ~~~~~~~~v-------~~~~~s-------~~~~~l----~~~~~dg~i~i~~~~----~~~~~~~----~~~~~~v~~~~ 156 (425)
T 1r5m_A 103 SSGKTTNQV-------TCLAWS-------HDGNSI----VTGVENGELRLWNKT----GALLNVL----NFHRAPIVSVK 156 (425)
T ss_dssp -----CBCE-------EEEEEC-------TTSSEE----EEEETTSCEEEEETT----SCEEEEE----CCCCSCEEEEE
T ss_pred cccCCCCce-------EEEEEc-------CCCCEE----EEEeCCCeEEEEeCC----CCeeeec----cCCCccEEEEE
Confidence 57788 999999 999999 999999999999953 3333433 36899999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCce--eeeecccCCCCCCeEEEEec-CcEEEEec-C
Q 003871 449 YSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR-GSHLFSAS-G 524 (790)
Q Consensus 449 ~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~V~~l~~s-~~~l~s~s-d 524 (790)
|+|++++|++++.|+.|++||+.++.. ... +...... ........+....+.+++|+ +..+++++ +
T Consensus 157 ~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (425)
T 1r5m_A 157 WNKDGTHIISMDVENVTILWNVISGTV-----MQH-----FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226 (425)
T ss_dssp ECTTSSEEEEEETTCCEEEEETTTTEE-----EEE-----ECCC---------------CCCBSCCEEEETTEEEEECGG
T ss_pred ECCCCCEEEEEecCCeEEEEECCCCcE-----EEE-----eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC
Confidence 999999999999999999999876543 000 0000000 00000000122338899999 77788877 9
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEE
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 603 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s 603 (790)
|.|++||+.+++.+..+..|...|.+++|+|++ .+++++.||.|++||+.+++.+..+.+|...|.+++|+|++ ++++
T Consensus 227 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~ 305 (425)
T 1r5m_A 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVIS 305 (425)
T ss_dssp GCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEE
T ss_pred CeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEE
Confidence 999999999999999999999999999999999 99999999999999999999999999999999999999999 9999
Q ss_pred EeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCc-------------
Q 003871 604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN------------- 669 (790)
Q Consensus 604 ~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~------------- 669 (790)
++.|+.|++||+++++. +. ....|. ..+.+++|+|++++|+++ .||.|++||+.+++
T Consensus 306 ~~~d~~i~i~d~~~~~~-----~~-~~~~~~---~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 376 (425)
T 1r5m_A 306 CSMDGSVRLWSLKQNTL-----LA-LSIVDG---VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGI 376 (425)
T ss_dssp EETTSEEEEEETTTTEE-----EE-EEECTT---CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC------------
T ss_pred EeCCCcEEEEECCCCcE-----eE-ecccCC---ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccc
Confidence 99999999999998543 33 222344 689999999999999995 79999999999887
Q ss_pred -------eeeeecCCCCCC--CeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 003871 670 -------HTSQLVPDKMDL--PITYATYSCDGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 670 -------~~~~~~~~~h~~--~v~~l~~s~dg~~l~sgs~dg~i~vwd~~ 710 (790)
.+..+.. |.. .|.+++|+|++++|++++.||.|++||++
T Consensus 377 ~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 377 LNPLPIPLYASYQS--SQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp --CEECCEEEEECC--TTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cCcccchhhhhhcC--cccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 7777764 444 99999999999999999999999999986
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.8e-35 Score=315.11 Aligned_cols=312 Identities=12% Similarity=0.064 Sum_probs=258.4
Q ss_pred ccccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 003871 332 PYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDA 404 (790)
Q Consensus 332 v~~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la 404 (790)
|.+++|+|| ..++.+. .|+....... ....+|...| ++++|+ |||+++
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~~h~~~v-------~~~~~~-------~~~~~l- 66 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALI--GPGIPRHARQ--------INTLNHGEVV-------CAVTIS-------NPTRHV- 66 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSS--STTCCSEEEE--------EEEECCSSCC-------CEEEEC-------SSSSEE-
T ss_pred eeEEEECCCCCEEEeecCCCcEe--ccccCCcccc--------ceeccCCCce-------EEEEEe-------cCCcEE-
Confidence 349999999 3344555 6665554443 3334799999 999999 999999
Q ss_pred ccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccccccc
Q 003871 405 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 484 (790)
Q Consensus 405 ~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~ 484 (790)
++++ |+.|++||+...........+.. .+|...|.+++|+|+++++++++.|+.|++|++.++..
T Consensus 67 ---~~~~-dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--------- 131 (337)
T 1gxr_A 67 ---YTGG-KGCVKVWDISHPGNKSPVSQLDC--LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP--------- 131 (337)
T ss_dssp ---EEEC-BSEEEEEETTSTTCCSCSEEEEC--SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------
T ss_pred ---EEcC-CCeEEEEECCCCCceeeeecccc--cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc---------
Confidence 9998 99999999975322223333222 35899999999999999999999999999999876432
Q ss_pred ccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEE
Q 003871 485 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA 560 (790)
Q Consensus 485 ~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~ 560 (790)
.... ....|...|.+++|+ ++++++++ ||.|++||+.+++....+..|...+.+++|+|++ .++
T Consensus 132 ----------~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 199 (337)
T 1gxr_A 132 ----------RIKA--ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199 (337)
T ss_dssp ----------EEEE--EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ----------ceee--ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEE
Confidence 0111 112588899999999 78899988 8999999999999999999999999999999999 999
Q ss_pred EEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCe
Q 003871 561 FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 640 (790)
Q Consensus 561 sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v 640 (790)
+++.||.|++||+++++.+..+. |...+.+++|+|+++++++++.|+.|++||+++++.. . + ..|. ..|
T Consensus 200 ~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-----~-~-~~~~---~~v 268 (337)
T 1gxr_A 200 TGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-----Q-L-HLHE---SCV 268 (337)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-----E-E-CCCS---SCE
T ss_pred EEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-----E-E-cCCc---cce
Confidence 99999999999999998887775 7788999999999999999999999999999985421 1 2 2344 689
Q ss_pred EEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 003871 641 NHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 641 ~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~ 709 (790)
.+++|+|++++|+++ .||.|++||+.+++.+.... |...+.+++|+|++++|++++.||.|++|++
T Consensus 269 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred eEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec---CCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999999999999985 89999999999998875543 5889999999999999999999999999996
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.3e-36 Score=332.15 Aligned_cols=323 Identities=10% Similarity=0.041 Sum_probs=257.0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
++++|+ |||+++ ++++.|+.|++||+.. ...... + ..| ..+....|+|++++|++++.||.
T Consensus 60 ~~~~~s-------~~g~~l----~~~~~d~~v~i~d~~~----~~~~~~-~--~~~-~~~~~~~~~~~~~~l~~~~~dg~ 120 (420)
T 3vl1_A 60 KGNTFE-------KVGSHL----YKARLDGHDFLFNTII----RDGSKM-L--KRA-DYTAVDTAKLQMRRFILGTTEGD 120 (420)
T ss_dssp TTCEEE-------EEETTE----EEEEETTEEEEEECCS----EETTTT-S--CSC-CEEEEEEECSSSCEEEEEETTSC
T ss_pred cceeee-------ecCCeE----EEEEcCCcEEEEEecc----cceeeE-E--ecC-CceEEEEEecCCCEEEEEECCCC
Confidence 689999 999999 9999999999999973 222221 1 123 44555578999999999999999
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEE
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 541 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~ 541 (790)
|++||+.++. .... ..+|...|.+++|+ +++|++++ |+.|++||+.+++.+..+
T Consensus 121 i~iwd~~~~~---------------------~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 121 IKVLDSNFNL---------------------QREI--DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp EEEECTTSCE---------------------EEEE--TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred EEEEeCCCcc---------------------eeee--cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence 9999876532 2221 23699999999999 88999999 999999999999999999
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcC---CCCCEEEEE---------------------EeC
Q 003871 542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCLA---------------------YSL 596 (790)
Q Consensus 542 ~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~---h~~~v~~l~---------------------~sp 596 (790)
.+|...|.+++|+|++ .+++|+.||.|++||+++++.+..+.. |...|.+++ |+|
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 9999999999999999 999999999999999999999888875 444555555 578
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCC-EEEEE-eCCcEEEEECCCCce-eee
Q 003871 597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI-HEGQIDVYEAPTLNH-TSQ 673 (790)
Q Consensus 597 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~-~dg~I~iwd~~~~~~-~~~ 673 (790)
+++++++|+.||.|++||+++++ .+..+..+|. ..|.+++|+|++. +|+++ .||.|++||+++++. +..
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~---~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 329 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKE-----QTIQLPSKFT---CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGE 329 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCC-----EEEEECCTTS---SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCc-----eeEEcccccC---CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhh
Confidence 89999999999999999999854 2332445565 6899999999998 88885 889999999998754 666
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE---EEeccccccCCCCcccccceEEEEEecCCCC---E
Q 003871 674 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR---CQINLTAYAQPGTISLELYPLVIAAHPLEPN---R 747 (790)
Q Consensus 674 ~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~---~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~---~ 747 (790)
+.. +|...+.++.+ +++++|++++.||.|++|++...... ..+..... ..+| ...+. +++|+| ++. .
T Consensus 330 ~~~-~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-~~~~-~~~v~--~~~~s~-~~~~~g~ 402 (420)
T 3vl1_A 330 FLI-NEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTF-LVSN-DDAVS--QFCYVS-DDESNGE 402 (420)
T ss_dssp EEE-STTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEE-ECCS-SCCCC--EEEEEC-CSSSSCE
T ss_pred hhc-cCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccE-EccC-CcceE--EEEEcc-CCCCcce
Confidence 654 35778888855 58889999999999999999874221 11111111 1133 44666 999999 788 7
Q ss_pred EEEEeCCCcEEEEecCC
Q 003871 748 IALGLTNGRVHVIEPLE 764 (790)
Q Consensus 748 las~s~Dg~i~iW~~~~ 764 (790)
+++++.+|.+.+|+++.
T Consensus 403 l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 403 VLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEETTTEEEEEESCC
T ss_pred EEEEcCCceEEEEeccC
Confidence 77778899999999865
No 46
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3e-35 Score=310.88 Aligned_cols=287 Identities=13% Similarity=0.109 Sum_probs=242.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
.++.+|...| ++++|+ |||+++ ++|+.|+.|++|+... +...... .+|...|.++
T Consensus 17 ~~~~gh~~~v-------~~~~~s-------~~~~~l----~s~~~dg~i~iw~~~~----~~~~~~~---~~h~~~v~~~ 71 (312)
T 4ery_A 17 FTLAGHTKAV-------SSVKFS-------PNGEWL----ASSSADKLIKIWGAYD----GKFEKTI---SGHKLGISDV 71 (312)
T ss_dssp EEECCCSSCE-------EEEEEC-------TTSSEE----EEEETTSCEEEEETTT----CCEEEEE---CCCSSCEEEE
T ss_pred EEEcccCCcE-------EEEEEC-------CCCCEE----EEeeCCCeEEEEeCCC----cccchhh---ccCCCceEEE
Confidence 6678999999 999999 999999 9999999999999973 4443322 3699999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-C
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 524 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-d 524 (790)
+|+|++++|++++.|+.|++||+.++.. ... ..+|...|.+++|+ ++++++++ |
T Consensus 72 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~---------------------~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d 128 (312)
T 4ery_A 72 AWSSDSNLLVSASDDKTLKIWDVSSGKC---------------------LKT--LKGHSNYVFCCNFNPQSNLIVSGSFD 128 (312)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCE---------------------EEE--EECCSSCEEEEEECSSSSEEEEEETT
T ss_pred EEcCCCCEEEEECCCCEEEEEECCCCcE---------------------EEE--EcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 9999999999999999999999876432 111 12689999999999 88999999 9
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEc-CCCCCEEEEEEeCCCCEEE
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLV 602 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~ 602 (790)
+.|++||+.+++.+..+..|..+|.+++|+|++ .+++|+.||.|++||+.+++.+..+. .+...+..++|+|++++++
T Consensus 129 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 208 (312)
T 4ery_A 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208 (312)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEE
T ss_pred CcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEE
Confidence 999999999999999999999999999999999 99999999999999999998877764 4667899999999999999
Q ss_pred EEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCC
Q 003871 603 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDL 681 (790)
Q Consensus 603 s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~ 681 (790)
+++.|+.|++||+++++. +. ...+|......+......+++.+++++ .||.|++||+.+++.+..+.+ |..
T Consensus 209 ~~~~d~~i~iwd~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~ 280 (312)
T 4ery_A 209 AATLDNTLKLWDYSKGKC-----LK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG--HTD 280 (312)
T ss_dssp EEETTTEEEEEETTTTEE-----EE-EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECC--CSS
T ss_pred EEcCCCeEEEEECCCCcE-----EE-EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhc--cCC
Confidence 999999999999998543 23 222333111123333344678888885 899999999999999988864 789
Q ss_pred CeEEEEEecCCCEEEEEE--cCCeEEEEECC
Q 003871 682 PITYATYSCDGKCIYVSC--KSGHVKVFDTS 710 (790)
Q Consensus 682 ~v~~l~~s~dg~~l~sgs--~dg~i~vwd~~ 710 (790)
.|.+++|+|+++++++++ .|+.|++|+.+
T Consensus 281 ~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 281 VVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred cEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999999987 69999999864
No 47
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.6e-34 Score=308.58 Aligned_cols=294 Identities=16% Similarity=0.205 Sum_probs=242.0
Q ss_pred CCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-
Q 003871 438 NSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spd-g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s- 515 (790)
.||.+.|++++|+|+ +++|++|+.|++|++||+.+... ..+..... ..+|...|.+++|+
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~----------------~~~~~~~~--l~~h~~~V~~~~~s~ 96 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET----------------NYGIPQRA--LRGHSHFVSDVVISS 96 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS----------------CSEEEEEE--ECCCSSCEEEEEECT
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc----------------ccceeeEE--EeCCCCCEEEEEECC
Confidence 489999999999998 68999999999999999886433 11112221 23799999999999
Q ss_pred -CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEEEcCCCCCEEE
Q 003871 516 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITC 591 (790)
Q Consensus 516 -~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~-~~~l~~h~~~v~~ 591 (790)
+++|++++ |+.|++|+............+...+....+++++ .+++|+.|+.+++||...... .....+|...+..
T Consensus 97 dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~ 176 (340)
T 4aow_A 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC 176 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEE
T ss_pred CCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccc
Confidence 89999999 9999999999998888888888899999999999 999999999999999876544 3345679999999
Q ss_pred EEEeCCC--CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCC
Q 003871 592 LAYSLSL--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL 668 (790)
Q Consensus 592 l~~spdg--~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~ 668 (790)
++|++++ .++++++.|+.|++||+++++. +. ...+|. +.|++++|+|++++|+++ .|+.|++||+++.
T Consensus 177 ~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-----~~-~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-----KT-NHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTTEE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred eEEccCCCCcEEEEEcCCCEEEEEECCCCce-----ee-EecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 9999864 5789999999999999998542 33 334566 699999999999999995 8999999999999
Q ss_pred ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccc--cCCCCcccccceEEEEEecCCCC
Q 003871 669 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY--AQPGTISLELYPLVIAAHPLEPN 746 (790)
Q Consensus 669 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~--~~~gh~~~~v~~~~v~~sp~d~~ 746 (790)
+.+..+.. ...+.+++|+|++.++ +++.|+.|++||++++..+..+..... ...+| ...|. +++|+| +++
T Consensus 248 ~~~~~~~~---~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~--~l~~s~-dg~ 319 (340)
T 4aow_A 248 KHLYTLDG---GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE-PPQCT--SLAWSA-DGQ 319 (340)
T ss_dssp EEEEEEEC---SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CC-CCCEE--EEEECT-TSS
T ss_pred ceeeeecC---CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCC-CCCEE--EEEECC-CCC
Confidence 99888854 5789999999988655 566799999999999988777653221 12244 44555 999999 899
Q ss_pred EEEEEeCCCcEEEEecCCCc
Q 003871 747 RIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 747 ~las~s~Dg~i~iW~~~~~~ 766 (790)
+|++|+.||.|+||++.+|.
T Consensus 320 ~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 320 TLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEETTSCEEEEEEEC--
T ss_pred EEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999999986
No 48
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.2e-34 Score=322.68 Aligned_cols=324 Identities=18% Similarity=0.210 Sum_probs=269.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
..+.+|.+.++ .+ ++ ++|+++ ++|+.||+|++||+.. +.+... + .+|...|+++
T Consensus 112 ~~l~~h~~~v~------~~--~~-------~~g~~l----~sg~~dg~i~vwd~~~----~~~~~~-~--~~h~~~v~~~ 165 (445)
T 2ovr_B 112 KVLKGHDDHVI------TC--LQ-------FCGNRI----VSGSDDNTLKVWSAVT----GKCLRT-L--VGHTGGVWSS 165 (445)
T ss_dssp EEEECSTTSCE------EE--EE-------EETTEE----EEEETTSCEEEEETTT----CCEEEE-C--CCCSSCEEEE
T ss_pred EEecccCCCcE------EE--EE-------EcCCEE----EEEECCCcEEEEECCC----CcEEEE-E--cCCCCCEEEE
Confidence 56778988762 44 54 569999 9999999999999973 444332 2 3799999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCe
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGK 526 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~ 526 (790)
+|+ ++++++++.||+|++||+.++.. .... .+|...|.+++|+++.+++++ ||.
T Consensus 166 ~~~--~~~l~s~~~dg~i~vwd~~~~~~---------------------~~~~--~~h~~~v~~~~~~~~~l~s~s~dg~ 220 (445)
T 2ovr_B 166 QMR--DNIIISGSTDRTLKVWNAETGEC---------------------IHTL--YGHTSTVRCMHLHEKRVVSGSRDAT 220 (445)
T ss_dssp EEE--TTEEEEEETTSCEEEEETTTTEE---------------------EEEE--CCCSSCEEEEEEETTEEEEEETTSE
T ss_pred Eec--CCEEEEEeCCCeEEEEECCcCcE---------------------EEEE--CCCCCcEEEEEecCCEEEEEeCCCE
Confidence 998 56899999999999999876432 2211 268999999999988888888 999
Q ss_pred EEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEe
Q 003871 527 ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 605 (790)
Q Consensus 527 I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s 605 (790)
|++||+.+++.+..+.+|...|.++++ ++ .+++|+.||.|++||+.+++.+..+.+|...|.+++| +++++++|+
T Consensus 221 i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 296 (445)
T 2ovr_B 221 LRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS 296 (445)
T ss_dssp EEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE
T ss_pred EEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe
Confidence 999999999999999999999999999 67 9999999999999999999999999999999999999 788999999
Q ss_pred CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCC-CCCCCe
Q 003871 606 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPD-KMDLPI 683 (790)
Q Consensus 606 ~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~-~h~~~v 683 (790)
.|+.|++||+++++. +. ...+|. ..+.++.++ +.+++++ .||.|++||+++++.+..+... .|...|
T Consensus 297 ~d~~i~i~d~~~~~~-----~~-~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 365 (445)
T 2ovr_B 297 LDTSIRVWDVETGNC-----IH-TLTGHQ---SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV 365 (445)
T ss_dssp TTSCEEEEETTTCCE-----EE-EECCCC---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCE
T ss_pred CCCeEEEEECCCCCE-----EE-EEcCCc---ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCE
Confidence 999999999998653 33 223454 578887775 5688875 8999999999999998888653 268899
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCc----EEE
Q 003871 684 TYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR----VHV 759 (790)
Q Consensus 684 ~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~----i~i 759 (790)
.+++|+ +++|++|+.||.|++||+.+++.+..+.... . +.+.+.|+ +++|+| ++.++|+|+.||+ |.|
T Consensus 366 ~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~-~~~~~~v~--~~~~s~-~~~~la~~~~dg~~~~~l~v 437 (445)
T 2ovr_B 366 TCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE--S-GGSGGVVW--RIRASN-TKLVCAVGSRNGTEETKLLV 437 (445)
T ss_dssp EEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECT--T-GGGTCEEE--EEEECS-SEEEEEEECSSSSSCCEEEE
T ss_pred EEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccc--c-CCCCceEE--EEEecC-CEEEEEEcccCCCCccEEEE
Confidence 999995 6899999999999999999999888773210 0 22355666 999999 8999999999998 999
Q ss_pred EecCCC
Q 003871 760 IEPLES 765 (790)
Q Consensus 760 W~~~~~ 765 (790)
||+...
T Consensus 438 ~df~~~ 443 (445)
T 2ovr_B 438 LDFDVD 443 (445)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998653
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-36 Score=332.93 Aligned_cols=329 Identities=14% Similarity=0.139 Sum_probs=260.1
Q ss_pred ccccccCCC-------C-----------CCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 332 PYCINVMPN-------A-----------NNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 393 (790)
Q Consensus 332 v~~i~fspd-------~-----------~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~ 393 (790)
|.+++|+|+ + .|+.|+ +||..++.... . .....|...| ++++|+
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~--iw~~~~~~~~~-----~-~~~~~~~~~v-------~~~~~s--- 76 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLE--LWSLLAADSEK-----P-IASLQVDSKF-------NDLDWS--- 76 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCE--EEESSSGGGCS-----C-SCCCCCSSCE-------EEEEEC---
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEE--EEEccCCCCCc-----E-EEEEecCCce-------EEEEEC---
Confidence 348899988 2 578899 99999886320 0 2223588888 999999
Q ss_pred CCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEecCC
Q 003871 394 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQS 472 (790)
Q Consensus 394 ~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spd-g~~l~s~~~dg~i~vw~~~~ 472 (790)
|||+++ ++|+.|+.|++||+........... .+ .+|...|.+++|+|+ +++|++++.|+.|++||+.+
T Consensus 77 ----~~~~~l----~~~~~dg~v~vw~~~~~~~~~~~~~-~~--~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 145 (416)
T 2pm9_A 77 ----HNNKII----AGALDNGSLELYSTNEANNAINSMA-RF--SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK 145 (416)
T ss_dssp ----SSSSCE----EEEESSSCEEEECCSSTTSCCCEEE-EC--CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred ----CCCCeE----EEEccCCeEEEeecccccccccchh-hc--cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence 999999 9999999999999974211122222 22 369999999999998 89999999999999999987
Q ss_pred CCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCcEEEEEcCC----
Q 003871 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANP---- 544 (790)
Q Consensus 473 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~---- 544 (790)
..... ..+ ..........|...|.+++|+ +.++++++ ||.|++||+.+++.+..+..+
T Consensus 146 ~~~~~---------~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 211 (416)
T 2pm9_A 146 CTESP---------SNY-----TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS 211 (416)
T ss_dssp TSSCT---------TTC-----CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS
T ss_pred Ccccc---------ccc-----cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc
Confidence 54100 000 000100113688999999999 46888888 999999999999999988876
Q ss_pred --CCCeEEEEEcCCC--eEEEEeCCC---cEEEEeCCCC-ceEEEEc-CCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEE
Q 003871 545 --PPIATYFILLPQD--LFAFGFDDS---SILVHCPCTK-KTKAKLK-GHQNRITCLAYSL-SLNVLVSSGADAQLCVWD 614 (790)
Q Consensus 545 --~~~v~~l~~s~~g--~l~sgs~dg---~I~iwd~~~~-~~~~~l~-~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd 614 (790)
...|.+++|+|++ .+++++.|+ .|++||++++ .....+. +|...|.+++|+| ++++|++++.|+.|++||
T Consensus 212 ~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 212 GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291 (416)
T ss_dssp CCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred ccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence 7889999999997 899999998 9999999986 6677787 8999999999999 999999999999999999
Q ss_pred CCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCC-CEEEEE-eCCcEEEEECCCCceeeeecC----------------
Q 003871 615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHTSQLVP---------------- 676 (790)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~-~~l~~~-~dg~I~iwd~~~~~~~~~~~~---------------- 676 (790)
+++++. +..+ .+|. ..|.+++|+|++ .+++++ .|+.|++||+.++........
T Consensus 292 ~~~~~~-----~~~~-~~~~---~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (416)
T 2pm9_A 292 PESAEQ-----LSQF-PARG---NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNV 362 (416)
T ss_dssp SSSCCE-----EEEE-ECSS---SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC------------------
T ss_pred CCCCcc-----ceee-cCCC---CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccc
Confidence 998543 3322 3455 689999999999 788884 899999999987654322100
Q ss_pred -----------------CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003871 677 -----------------DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 677 -----------------~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
..|..++.+++|+|+|++|++|+.|+.|+||++.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 363 SREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ----CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 014667889999999999999999999999999875
No 50
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.8e-35 Score=318.85 Aligned_cols=288 Identities=14% Similarity=0.115 Sum_probs=234.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCce-eeeeccC-------------
Q 003871 372 GRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPD------------- 437 (790)
Q Consensus 372 ~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~-~~~~l~~------------- 437 (790)
+|.+.| ++++|+ |||+++ |+|+ ++++++|++.. +.. ..+....
T Consensus 62 ~h~~~V-------~~v~fs-------pdg~~l----a~g~-~~~v~i~~~~~----g~~~~~l~~~~~~~~~~~~~~~~~ 118 (393)
T 1erj_A 62 DHTSVV-------CCVKFS-------NDGEYL----ATGC-NKTTQVYRVSD----GSLVARLSDDSAANKDPENLNTSS 118 (393)
T ss_dssp ECSSCC-------CEEEEC-------TTSSEE----EEEC-BSCEEEEETTT----CCEEEEECC---------------
T ss_pred CCCCEE-------EEEEEC-------CCCCEE----EEEc-CCcEEEEEecC----CCEEEEecCccccccccccccccc
Confidence 599998 999999 999999 8876 68999999974 332 2221000
Q ss_pred -CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-
Q 003871 438 -NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 515 (790)
Q Consensus 438 -~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s- 515 (790)
..+...|.+++|+|+|++|++++.|+.|++||+.++.. ... ..+|...|.+++|+
T Consensus 119 ~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~---------------------~~~--~~~h~~~v~~~~~~p 175 (393)
T 1erj_A 119 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI---------------------VMI--LQGHEQDIYSLDYFP 175 (393)
T ss_dssp --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---------------------EEE--ECCCSSCEEEEEECT
T ss_pred cCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE---------------------EEE--EccCCCCEEEEEEcC
Confidence 01233599999999999999999999999999876432 211 23799999999999
Q ss_pred -CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEEE-------cC
Q 003871 516 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL-------KG 584 (790)
Q Consensus 516 -~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~-~g-~l~sgs~dg~I~iwd~~~~~~~~~l-------~~ 584 (790)
+++|++++ |++|++||+.++++...+. +...+.+++|+| ++ ++++|+.||.|++||+.++..+..+ .+
T Consensus 176 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 254 (393)
T 1erj_A 176 SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 254 (393)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CC
T ss_pred CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCC
Confidence 88999999 9999999999999888776 556799999999 77 9999999999999999999887776 57
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee-------ceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-e
Q 003871 585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC-------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H 656 (790)
Q Consensus 585 h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~-------~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~ 656 (790)
|...|.+++|+|+|++|++|+.|++|++||+++..... ..... ...+|. ..|.+++|+|++.+|+++ .
T Consensus 255 h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~-~~~~h~---~~v~~~~~~~~~~~l~sgs~ 330 (393)
T 1erj_A 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV-TYIGHK---DFVLSVATTQNDEYILSGSK 330 (393)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEE-EEECCS---SCEEEEEECGGGCEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceE-EEeccc---CcEEEEEECCCCCEEEEEeC
Confidence 99999999999999999999999999999998643211 01112 233565 689999999999999995 8
Q ss_pred CCcEEEEECCCCceeeeecCCCCCCCeEEEEEec------CCCEEEEEEcCCeEEEEECCCC
Q 003871 657 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC------DGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 657 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~------dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
|+.|++||+.+++++..+.+ |...|.+++|++ ++++|++|+.||+|++|++...
T Consensus 331 D~~v~iwd~~~~~~~~~l~~--h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 331 DRGVLFWDKKSGNPLLMLQG--HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TSEEEEEETTTCCEEEEEEC--CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCeEEEEECCCCeEEEEECC--CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 99999999999999888865 789999999986 6889999999999999997643
No 51
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=323.18 Aligned_cols=351 Identities=10% Similarity=0.037 Sum_probs=247.6
Q ss_pred CCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCcccceeccCCCceEeeec
Q 003871 343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRES-TSLPDADSAVCAKSLEKSVNLKL 421 (790)
Q Consensus 343 d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~-dg~~la~~~at~s~d~~i~iwd~ 421 (790)
++.++ +|+...++.. ..+.+|.+.| ++++|+ | +|+++ ++|+.||.|++||+
T Consensus 22 ~~~~~--v~~~~~~~~~--------~~~~~h~~~v-------~~~~~s-------~~~~~~l----~~~~~dg~i~iw~~ 73 (408)
T 4a11_B 22 ESTRR--VLGLELNKDR--------DVERIHGGGI-------NTLDIE-------PVEGRYM----LSGGSDGVIVLYDL 73 (408)
T ss_dssp HHHHH--HHTEEECTTE--------EECCCCSSCE-------EEEEEC-------TTTCCEE----EEEETTSCEEEEEC
T ss_pred cCcce--eeccccCcce--------eeeeccCCcE-------EEEEEe-------cCCCCEE----EEEcCCCeEEEEEC
Confidence 56788 8888888776 7788999999 999999 9 99999 99999999999999
Q ss_pred cccCCCCceeeee---c---cCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCc
Q 003871 422 QLINEPSECRTLL---L---PDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK 494 (790)
Q Consensus 422 ~~~~~~~~~~~~~---l---~~~~h~~~V~~l~~sp-dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~ 494 (790)
............. . ...+|...|.+++|+| +++++++++.||.|++||+.++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------- 134 (408)
T 4a11_B 74 ENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT------------------- 134 (408)
T ss_dssp CCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-------------------
T ss_pred CCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-------------------
Confidence 7522111111000 0 0025899999999999 788999999999999999876432
Q ss_pred eeeeecccCCCCCCeEEEEec-----CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCC
Q 003871 495 LVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS 566 (790)
Q Consensus 495 ~~~~~~~~~~~~~~V~~l~~s-----~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg 566 (790)
.... .+...+.++.++ +.++++++ +|.|++||+.+++.+..+..|...|.+++|+|++ .+++|+.||
T Consensus 135 --~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg 209 (408)
T 4a11_B 135 --ADVF---NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADS 209 (408)
T ss_dssp --EEEE---ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTS
T ss_pred --ceec---cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCC
Confidence 1111 267788899988 33888888 8999999999999999999999999999999999 589999999
Q ss_pred cEEEEeCCCCc-eEEEE---------------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeec
Q 003871 567 SILVHCPCTKK-TKAKL---------------KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630 (790)
Q Consensus 567 ~I~iwd~~~~~-~~~~l---------------~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~ 630 (790)
.|++||++++. .+..+ .+|...|.+++|+|++++|++++.|+.|++||+.+++...........
T Consensus 210 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 289 (408)
T 4a11_B 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCN 289 (408)
T ss_dssp CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCC
T ss_pred cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccc
Confidence 99999998765 34444 568899999999999999999999999999999986543211111000
Q ss_pred cCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 003871 631 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 631 ~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~ 710 (790)
.... .........+.+.+++++.++.|++||+.+++.+..+.+ |...|++++|+|++++|++|+.||.|++||+.
T Consensus 290 ~~~~---~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 290 NSKK---GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG--HYKTVDCCVFQSNFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp CCSS---CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred cccc---cceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc--CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence 1111 122233334445555667999999999999999998864 68999999999999999999999999999999
Q ss_pred CCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 711 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 711 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
+++.+...... .. ...+.|.....+.+++.|+.+++|+..
T Consensus 365 ~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 365 LYEPVPDDDET-----------TT--KSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp C----------------------------------------------------
T ss_pred CCCccCCCCce-----------Ee--ccccccccceeecccCccCceeecCCc
Confidence 99876554311 11 233444345567778889999999864
No 52
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-35 Score=326.63 Aligned_cols=317 Identities=10% Similarity=0.100 Sum_probs=245.6
Q ss_pred CCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCcc
Q 003871 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQS 476 (790)
Q Consensus 398 ~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~sp-dg~~l~s~~~dg~i~vw~~~~~~~~ 476 (790)
|+++.+ ++++ .|+.. ...+..+. .+|.+.|++++|+| ++++|++|+.||+|++||+.+...
T Consensus 37 ~~~~~~----~~~~------~w~~~----g~~~~~~~---~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~- 98 (437)
T 3gre_A 37 PIQEIV----RSPN------MGNLR----GKLIATLM---ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV- 98 (437)
T ss_dssp CCCCCC----CCCC------GGGCC----CCEEEEEC---TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT-
T ss_pred Cccccc----cccc------ccccc----ceEEeeec---cCCCCceEEEEECCCCCCEEEEecCCceEEEeECccccc-
Confidence 888888 7665 48864 34444442 36999999999999 999999999999999999865111
Q ss_pred ccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECC---CCcEEEEEc--------
Q 003871 477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE---TFQTLATFA-------- 542 (790)
Q Consensus 477 ~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~---~~~~~~~~~-------- 542 (790)
+.........+|...|.+++|+ +++|++++ ||.|++||+. +++....+.
T Consensus 99 -----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~ 161 (437)
T 3gre_A 99 -----------------GEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKIN 161 (437)
T ss_dssp -----------------TCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred -----------------CcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEE
Confidence 0000000011489999999999 88999999 9999999995 555544332
Q ss_pred --C--CCCCeEEEE--EcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcC--CCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q 003871 543 --N--PPPIATYFI--LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVW 613 (790)
Q Consensus 543 --~--~~~~v~~l~--~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~--h~~~v~~l~~spdg~~l~s~s~dg~I~vw 613 (790)
. +...+.++. +++++ .+++|+.||.|++||+++++.+..+.+ |.+.|++++|+|++++|++|+.||+|++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 241 (437)
T 3gre_A 162 LKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIW 241 (437)
T ss_dssp GGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred ccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 1 455667776 56888 999999999999999999999999988 89999999999999999999999999999
Q ss_pred ECCCCceeeceeeeeeccCCCCCCCCeEEEEEe----CCCCEEEEE-eCCcEEEEECCCCceeeeecCCC----------
Q 003871 614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH----PDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK---------- 678 (790)
Q Consensus 614 d~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~s----p~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~---------- 678 (790)
|+++++ .+..+...|. ..|.+++|+ |++.+|+++ .|+.|++||+++++++..+..+.
T Consensus 242 d~~~~~-----~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 313 (437)
T 3gre_A 242 DIRFNV-----LIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP 313 (437)
T ss_dssp ETTTTE-----EEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC
T ss_pred EcCCcc-----EEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc
Confidence 999854 3333332344 589999665 467788886 88999999999998887776431
Q ss_pred --------------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccc---------------------
Q 003871 679 --------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY--------------------- 723 (790)
Q Consensus 679 --------------h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~--------------------- 723 (790)
|...|++++|+ ++++|++|+.||.|++||+.+++....+..+..
T Consensus 314 ~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (437)
T 3gre_A 314 IEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKM 392 (437)
T ss_dssp BCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEEC
T ss_pred cccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEec
Confidence 56679999999 889999999999999999999987776653210
Q ss_pred ---------cCCCCcccccceEEEEEecC-CCCEEEEEeCCCcEEEEe
Q 003871 724 ---------AQPGTISLELYPLVIAAHPL-EPNRIALGLTNGRVHVIE 761 (790)
Q Consensus 724 ---------~~~gh~~~~v~~~~v~~sp~-d~~~las~s~Dg~i~iW~ 761 (790)
...+| ...|+ +++|++. ++.+|++|+.||.|+||+
T Consensus 393 ~~~~~~~~~~~~~h-~~~I~--~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 393 KRTSTHSVDDSLYH-HDIIN--SISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp C--------------CCCEE--EEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccccCccccc-cccee--eEeeeccCCceEEEEEcCCceEEEeC
Confidence 01113 55666 8999983 277999999999999995
No 53
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=9.3e-35 Score=342.23 Aligned_cols=290 Identities=16% Similarity=0.196 Sum_probs=238.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCcccceeccCCCceEeeeccccCCC-CceeeeeccCCCCCCceE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTS-LPDADSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVV 445 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg-~~la~~~at~s~d~~i~iwd~~~~~~~-~~~~~~~l~~~~h~~~V~ 445 (790)
..+.+|.+.| ++++|+ |++ +++ +||+.|++|++|++...... +.... .+ .+|...|.
T Consensus 376 ~~l~~H~~~V-------~~v~~~-------~~~~~~l----~s~s~D~~i~~W~~~~~~~~~~~~~~-~~--~~h~~~v~ 434 (694)
T 3dm0_A 376 GTMRAHTDMV-------TAIATP-------IDNADII----VSASRDKSIILWKLTKDDKAYGVAQR-RL--TGHSHFVE 434 (694)
T ss_dssp EEEECCSSCE-------EEEECC-------TTCCSEE----EEEETTSEEEEEECCCSTTCSCEEEE-EE--ECCSSCEE
T ss_pred hhcccCCcee-------EEEEec-------CCCCCEE----EEEeCCCcEEEEEccCCCcccccccc-ee--cCCCCcEE
Confidence 4578999999 999998 765 567 99999999999999742111 11221 12 37999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec
Q 003871 446 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 523 (790)
Q Consensus 446 ~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s 523 (790)
+++|+|+|++|++|+.|++|++||+.++.. .... .+|...|.+++|+ +++|++++
T Consensus 435 ~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~---------------------~~~~--~~h~~~v~~~~~s~~~~~l~s~s 491 (694)
T 3dm0_A 435 DVVLSSDGQFALSGSWDGELRLWDLAAGVS---------------------TRRF--VGHTKDVLSVAFSLDNRQIVSAS 491 (694)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------EEEE--ECCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCcc---------------------eeEE--eCCCCCEEEEEEeCCCCEEEEEe
Confidence 999999999999999999999999876432 1111 2699999999999 88999999
Q ss_pred -CCeEEEEECCCCcEEEEE---cCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeC
Q 003871 524 -GGKISIFSLETFQTLATF---ANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 596 (790)
Q Consensus 524 -dg~I~vwd~~~~~~~~~~---~~~~~~v~~l~~s~~g---~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~sp 596 (790)
|++|++||.......... .+|...|.+++|+|++ .+++|+.|++|++||+++++....+.+|.+.|++++|+|
T Consensus 492 ~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 571 (694)
T 3dm0_A 492 RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP 571 (694)
T ss_dssp TTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred CCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC
Confidence 999999998754333322 3678889999999987 799999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecC
Q 003871 597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP 676 (790)
Q Consensus 597 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~ 676 (790)
++++|++|+.|++|++||+++++. +..+. .+ ..+.+++|+|++.+++++.++.|++||+++++.+..+..
T Consensus 572 dg~~l~sg~~Dg~i~iwd~~~~~~-----~~~~~-~~----~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~ 641 (694)
T 3dm0_A 572 DGSLCASGGKDGVVLLWDLAEGKK-----LYSLE-AN----SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKV 641 (694)
T ss_dssp TSSEEEEEETTSBCEEEETTTTEE-----EECCB-CS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECC
T ss_pred CCCEEEEEeCCCeEEEEECCCCce-----EEEec-CC----CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcc
Confidence 999999999999999999998653 23222 22 479999999999999998888999999999988877643
Q ss_pred CC-----------------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 677 DK-----------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 677 ~~-----------------h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
.. +...+++++|+|+|++|++|+.||.|++|++..
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 642 DLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp CCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 21 112478999999999999999999999999853
No 54
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.4e-34 Score=336.48 Aligned_cols=294 Identities=15% Similarity=0.195 Sum_probs=239.4
Q ss_pred CCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-
Q 003871 438 NSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg-~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s- 515 (790)
.+|.+.|++++|+|++ ++|++|+.|++|++|++.+... ..+..... ..+|...|.+++|+
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~----------------~~~~~~~~--~~~h~~~v~~v~~s~ 440 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK----------------AYGVAQRR--LTGHSHFVEDVVLSS 440 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT----------------CSCEEEEE--EECCSSCEEEEEECT
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc----------------ccccccce--ecCCCCcEEEEEECC
Confidence 3799999999999875 7899999999999999876432 11111111 12799999999999
Q ss_pred -CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEE---cCCCCCE
Q 003871 516 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRI 589 (790)
Q Consensus 516 -~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l---~~h~~~v 589 (790)
+++|++|+ ||+|++||+.+++....+.+|...|.+++|+|++ .+++|+.|++|++||.......... .+|...|
T Consensus 441 ~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 441 DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence 89999999 9999999999999999999999999999999999 9999999999999998754333222 4688999
Q ss_pred EEEEEeCCC--CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECC
Q 003871 590 TCLAYSLSL--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 666 (790)
Q Consensus 590 ~~l~~spdg--~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~ 666 (790)
.+++|+|++ ..+++|+.|++|++||+++++. .. ...+|. +.|++++|+|++++|+++ .|+.|++||++
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~-----~~-~~~~h~---~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL-----RS-TLAGHT---GYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE-----EE-EEcCCC---CCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 999999986 6899999999999999998542 22 334566 799999999999999995 89999999999
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecccccc---------CCCCcccccceEE
Q 003871 667 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA---------QPGTISLELYPLV 737 (790)
Q Consensus 667 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~---------~~gh~~~~v~~~~ 737 (790)
+++.+..+. +...|.+++|+|++.++++++ |+.|++||+.+++.+..+..+... +..+....+++.+
T Consensus 592 ~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (694)
T 3dm0_A 592 EGKKLYSLE---ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS 667 (694)
T ss_dssp TTEEEECCB---CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEE
T ss_pred CCceEEEec---CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee
Confidence 999887764 357899999999999887765 567999999999988877532110 0011122334569
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 738 IAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 738 v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
++|+| +|++|++|+.||+|+||++.
T Consensus 668 l~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 668 LNWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred EEEcC-CCCEEEEEcCCCeEEEEecc
Confidence 99999 89999999999999999985
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.2e-34 Score=322.24 Aligned_cols=337 Identities=14% Similarity=0.139 Sum_probs=269.6
Q ss_pred hhhhhhccCCCccccccccCCC-----CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 319 LLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 393 (790)
Q Consensus 319 ~~~~l~~h~~~v~v~~i~fspd-----~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~ 393 (790)
....+.+|.+.+ +.++.|+++ +.|++|+ +||..+++.+ ..+.+|.+.| ++++|+
T Consensus 113 ~~~~l~~h~~~v-~~~~~~~~~~l~sgs~dg~i~--vwd~~~~~~~--------~~~~~h~~~V-------~~l~~~--- 171 (464)
T 3v7d_B 113 QRTTLRGHMTSV-ITCLQFEDNYVITGADDKMIR--VYDSINKKFL--------LQLSGHDGGV-------WALKYA--- 171 (464)
T ss_dssp EEEEEECCSSSC-EEEEEEETTEEEEEETTSCEE--EEETTTTEEE--------EEECCCSSCE-------EEEEEC---
T ss_pred ceEEEcCCCCCc-EEEEEECCCEEEEEcCCCcEE--EEECCCCcEE--------EEEeCCCcCE-------EEEEEc---
Confidence 345778898876 458888887 8899999 9999999987 8889999999 999998
Q ss_pred CCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEc--CCCCEEEEEeCCCcEEEEecC
Q 003871 394 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS--HSGDFLVALTQTATHKLWKWQ 471 (790)
Q Consensus 394 ~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~s--pdg~~l~s~~~dg~i~vw~~~ 471 (790)
|++ .+ ++|+.||+|++||+.. +.+.... .+|...|.+++|+ ++++++++++.|+.|++||+.
T Consensus 172 ----~~~-~l----~s~s~dg~i~vwd~~~----~~~~~~~---~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 172 ----HGG-IL----VSGSTDRTVRVWDIKK----GCCTHVF---EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp ----STT-EE----EEEETTSCEEEEETTT----TEEEEEE---CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred ----CCC-EE----EEEeCCCCEEEEECCC----CcEEEEE---CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence 877 77 9999999999999973 4443322 3699999999998 588999999999999999998
Q ss_pred CCCcccccccccccccccc-CC-CceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCe
Q 003871 472 SNKQSLEEENVNMESQLYQ-PS-SKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 548 (790)
Q Consensus 472 ~~~~~~g~~~~~~~~~i~~-~~-~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v 548 (790)
+.............+.+.. +. ...... ...+|...|.++...++++++++ ||.|++||+.+++++..+.+|...|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v 313 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVG--VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI 313 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEE--EECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCcccccccccCCcceEeeccCCCeEEEE--EccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCE
Confidence 7654110000000000011 11 111122 12378999999977799999998 9999999999999999999999999
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeee
Q 003871 549 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 627 (790)
Q Consensus 549 ~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~ 627 (790)
.+++|+|++ .+++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++++++|+.||+|++||+.++... ..
T Consensus 314 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~----~~ 387 (464)
T 3v7d_B 314 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK----FS 387 (464)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE----EE
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee----ee
Confidence 999999999 99999999999999999999999999999999999997 579999999999999999985421 11
Q ss_pred eeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 003871 628 SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 707 (790)
Q Consensus 628 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vw 707 (790)
. .+. ..+..++|+|++.+++++.||.|++||+++++.+..+.. .|...|.+++|+ ++.++++++.||.+.+|
T Consensus 388 -~--~~~---~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~-~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 388 -Y--HHT---NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANIL-KDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp -E--ECT---TCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTT-TTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred -e--cCC---CCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhc-cCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 2 122 467889999999999998899999999999999887443 368899999997 44566666777766655
Q ss_pred E
Q 003871 708 D 708 (790)
Q Consensus 708 d 708 (790)
-
T Consensus 460 ~ 460 (464)
T 3v7d_B 460 I 460 (464)
T ss_dssp E
T ss_pred E
Confidence 3
No 56
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=303.36 Aligned_cols=284 Identities=15% Similarity=0.188 Sum_probs=244.9
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.+|.+.|.+++|+|+|++|++++.||.|++||+.++.. ... ..+|...|.+++|+
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---------------------~~~--~~~h~~~v~~~~~~~~ 85 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER---------------------LGT--LDGHTGTIWSIDVDCF 85 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE---------------------EEE--ECCCSSCEEEEEECTT
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh---------------------hhh--hhhcCCcEEEEEEcCC
Confidence 37999999999999999999999999999999876433 111 12689999999999
Q ss_pred CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCc-----------
Q 003871 516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKK----------- 577 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~d-----g~I~iwd~~~~~----------- 577 (790)
+++|++++ ||.|++||+.+++.+..+. +...+.+++|+|++ .+++++.+ |.|++||+.++.
T Consensus 86 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 164 (369)
T 3zwl_B 86 TKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE 164 (369)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence 88999998 9999999999999999888 88899999999999 99999998 999999987653
Q ss_pred eEEEEcCCCC--CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE
Q 003871 578 TKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 655 (790)
Q Consensus 578 ~~~~l~~h~~--~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~ 655 (790)
....+..|.. .+.+++|+|+++++++++.|+.|++||++++. ..+. ....|. ..|.+++|+|++.+|+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~-~~~~~~---~~v~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 165 PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY----EYVD-SIDLHE---KSISDMQFSPDLTYFITS 236 (369)
T ss_dssp CSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT----EEEE-EEECCS---SCEEEEEECTTSSEEEEE
T ss_pred eeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc----EeEE-EEecCC---CceeEEEECCCCCEEEEe
Confidence 3445556666 89999999999999999999999999998732 2233 223444 689999999999999985
Q ss_pred -eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC--------------eEEEEECCCCeEEEEecc
Q 003871 656 -HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG--------------HVKVFDTSTLELRCQINL 720 (790)
Q Consensus 656 -~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg--------------~i~vwd~~~~~~~~~~~~ 720 (790)
.|+.|++||+++++.+..+. +...+..++|+|+++++++++.++ .+++||..+++.+..+.
T Consensus 237 ~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~- 312 (369)
T 3zwl_B 237 SRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ- 312 (369)
T ss_dssp ETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE-
T ss_pred cCCceEEEEECCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee-
Confidence 89999999999999988886 478899999999999999999988 89999999999888876
Q ss_pred ccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCcc
Q 003871 721 TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 767 (790)
Q Consensus 721 ~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~ 767 (790)
+| ...|. +++|+| ++++|++++.||.|++|++.++..
T Consensus 313 ------~~-~~~v~--~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 313 ------GH-FGPLN--TVAISP-QGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp ------CC-SSCEE--EEEECT-TSSEEEEEETTSEEEEEEECHHHH
T ss_pred ------cc-cCcEE--EEEECC-CCCEEEEEcCCCeEEEEECccccc
Confidence 44 44566 999999 899999999999999999987643
No 57
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-33 Score=308.12 Aligned_cols=286 Identities=16% Similarity=0.231 Sum_probs=231.8
Q ss_pred CCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-
Q 003871 438 NSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg-~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s- 515 (790)
.+|...|.+++|+|++ ++|++++.||.|++||+.++.. .......+|...|.+++|+
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------------------~~~~~~~~h~~~v~~~~~~~ 128 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK---------------------TSFIQGMGPGDAITGMKFNQ 128 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC---------------------EEEECCCSTTCBEEEEEEET
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc---------------------ceeeecCCcCCceeEEEeCC
Confidence 3699999999999999 9999999999999999886433 1111112699999999998
Q ss_pred --CcEEEEec-CCeEEEEECCCCcEEEEEcCC---CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCC
Q 003871 516 --GSHLFSAS-GGKISIFSLETFQTLATFANP---PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 588 (790)
Q Consensus 516 --~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~---~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~ 588 (790)
++++++++ |+.|++||+.+ .....+..+ ...|.+++|+|++ .+++|+.||.|++||+ +++.+..+.+|...
T Consensus 129 ~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~ 206 (383)
T 3ei3_B 129 FNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAK 206 (383)
T ss_dssp TEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSC
T ss_pred CCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCc
Confidence 47889888 99999999985 556666544 4789999999999 9999999999999999 57888899999999
Q ss_pred EEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeC-CCCEEEEE-eCCcEEEEEC
Q 003871 589 ITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI-HEGQIDVYEA 665 (790)
Q Consensus 589 v~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~-~dg~I~iwd~ 665 (790)
|.+++|+|+++ ++++|+.|+.|++||+++++... ..+..+ +|. ..|.+++|+| ++.+|+++ .|+.|++||+
T Consensus 207 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~--~~~---~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~ 280 (383)
T 3ei3_B 207 VTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN-SYIAEM--PHE---KPVNAAYFNPTDSTKLLTTDQRNEIRVYSS 280 (383)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT-CEEEEE--ECS---SCEEEEEECTTTSCEEEEEESSSEEEEEET
T ss_pred EEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc-ceEEEe--cCC---CceEEEEEcCCCCCEEEEEcCCCcEEEEEC
Confidence 99999999998 99999999999999998743211 223322 354 6999999999 99999985 8999999999
Q ss_pred CCCceeeeecCCC-----CC----------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcc
Q 003871 666 PTLNHTSQLVPDK-----MD----------LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 730 (790)
Q Consensus 666 ~~~~~~~~~~~~~-----h~----------~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~ 730 (790)
++++....+..+. |. ..+..++|+|+|++ +|+.||.|++||+.+++.+..+..+ ++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~------~~~ 352 (383)
T 3ei3_B 281 YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP------NAA 352 (383)
T ss_dssp TBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT------TBC
T ss_pred CCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC------CCC
Confidence 9888766665321 11 34455667777766 7779999999999999998887632 124
Q ss_pred cccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 731 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 731 ~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
..+. .++|+| ++++|++|+ ||.|+||++.+
T Consensus 353 ~~~~--~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 353 GIIS--LNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SCCC--EEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred ceEE--EEEEec-CccEEEEec-CCcEEEEecCC
Confidence 4555 779999 899999997 99999999875
No 58
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2e-33 Score=314.35 Aligned_cols=316 Identities=13% Similarity=0.169 Sum_probs=256.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
..+.+|...++ .++.| +++++ ++|+.||+|++||+.. +..... + .+|.+.|.++
T Consensus 115 ~~l~~h~~~v~------~~~~~---------~~~~l----~sgs~dg~i~vwd~~~----~~~~~~-~--~~h~~~V~~l 168 (464)
T 3v7d_B 115 TTLRGHMTSVI------TCLQF---------EDNYV----ITGADDKMIRVYDSIN----KKFLLQ-L--SGHDGGVWAL 168 (464)
T ss_dssp EEEECCSSSCE------EEEEE---------ETTEE----EEEETTSCEEEEETTT----TEEEEE-E--CCCSSCEEEE
T ss_pred EEEcCCCCCcE------EEEEE---------CCCEE----EEEcCCCcEEEEECCC----CcEEEE-E--eCCCcCEEEE
Confidence 56778988862 55554 47888 9999999999999973 443332 2 3799999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec----CcEEEEec
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS 523 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s----~~~l~s~s 523 (790)
+|+|++ ++++|+.||+|++||+.++.. ... ..+|...|.+++|+ +.++++++
T Consensus 169 ~~~~~~-~l~s~s~dg~i~vwd~~~~~~---------------------~~~--~~~h~~~v~~l~~~~~~~~~~l~s~s 224 (464)
T 3v7d_B 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCC---------------------THV--FEGHNSTVRCLDIVEYKNIKYIVTGS 224 (464)
T ss_dssp EECSTT-EEEEEETTSCEEEEETTTTEE---------------------EEE--ECCCSSCEEEEEEEESSSCEEEEEEE
T ss_pred EEcCCC-EEEEEeCCCCEEEEECCCCcE---------------------EEE--ECCCCCccEEEEEecCCCCCEEEEEc
Confidence 999998 899999999999999876432 221 12699999999997 57899998
Q ss_pred -CCeEEEEECCCCc-----------------------EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce
Q 003871 524 -GGKISIFSLETFQ-----------------------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT 578 (790)
Q Consensus 524 -dg~I~vwd~~~~~-----------------------~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~ 578 (790)
||.|++||+.++. ....+.+|...+.++ ++++ .+++|+.||.|++||+.+++.
T Consensus 225 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~ 302 (464)
T 3v7d_B 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC 302 (464)
T ss_dssp TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE
T ss_pred CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 9999999998765 245667888888776 5677 999999999999999999999
Q ss_pred EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeC
Q 003871 579 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE 657 (790)
Q Consensus 579 ~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~d 657 (790)
+..+.+|...|.+++|+|+++++++|+.|+.|++||+++++ .+. ...+|. ..|.+++|+ +.++++ +.|
T Consensus 303 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-----~~~-~~~~h~---~~v~~~~~~--~~~l~s~s~d 371 (464)
T 3v7d_B 303 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE-----LMY-TLQGHT---ALVGLLRLS--DKFLVSAAAD 371 (464)
T ss_dssp EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-----EEE-EECCCS---SCEEEEEEC--SSEEEEEETT
T ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----EEE-EEeCCC---CcEEEEEEc--CCEEEEEeCC
Confidence 99999999999999999999999999999999999999854 333 223555 689999998 467887 589
Q ss_pred CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEE
Q 003871 658 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 737 (790)
Q Consensus 658 g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 737 (790)
|.|++||+.++....... +...+..++|+|+++++++|+ ||.|++||+.+++.+..+.. +| ...|. +
T Consensus 372 g~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~------~~-~~~v~--~ 438 (464)
T 3v7d_B 372 GSIRGWDANDYSRKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANIL------KD-ADQIW--S 438 (464)
T ss_dssp SEEEEEETTTCCEEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTT------TT-CSEEE--E
T ss_pred CcEEEEECCCCceeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhc------cC-CCcEE--E
Confidence 999999999887766653 467788899999999999998 89999999999998875332 33 45666 9
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEe
Q 003871 738 IAAHPLEPNRIALGLTNGRVHVIE 761 (790)
Q Consensus 738 v~~sp~d~~~las~s~Dg~i~iW~ 761 (790)
++|++ +.++++++.||.+.+|-
T Consensus 439 v~~~~--~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 439 VNFKG--KTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEET--TEEEEEEEETTEEEEEE
T ss_pred EEecC--CEEEEEEEeCCeEEEEE
Confidence 99975 46677777787766654
No 59
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.9e-34 Score=316.56 Aligned_cols=309 Identities=15% Similarity=0.116 Sum_probs=250.5
Q ss_pred ccccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 003871 334 CINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADS 406 (790)
Q Consensus 334 ~i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~ 406 (790)
+++|+|+ +.|+.++ +||..+++.. ..+.+| ..+ ....|+ |||+++
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~--i~d~~~~~~~--------~~~~~~-~~~-------~~~~~~-------~~~~~l--- 112 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDF--LFNTIIRDGS--------KMLKRA-DYT-------AVDTAK-------LQMRRF--- 112 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEE--EEECCSEETT--------TTSCSC-CEE-------EEEEEC-------SSSCEE---
T ss_pred ceeeeecCCeEEEEEcCCcEE--EEEeccccee--------eEEecC-Cce-------EEEEEe-------cCCCEE---
Confidence 8999998 7799999 9999999886 677776 333 455677 999999
Q ss_pred ceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccccccccc
Q 003871 407 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES 486 (790)
Q Consensus 407 ~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~ 486 (790)
++|+.|+.|++||+. .+.+.... .+|...|.+++|+|++++|++++.|+.|++||+.++..
T Consensus 113 -~~~~~dg~i~iwd~~----~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~----------- 173 (420)
T 3vl1_A 113 -ILGTTEGDIKVLDSN----FNLQREID---QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN----------- 173 (420)
T ss_dssp -EEEETTSCEEEECTT----SCEEEEET---TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-----------
T ss_pred -EEEECCCCEEEEeCC----Ccceeeec---ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-----------
Confidence 999999999999997 34444422 36999999999999999999999999999999876433
Q ss_pred ccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcC---CCCCeEE----------
Q 003871 487 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN---PPPIATY---------- 550 (790)
Q Consensus 487 ~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~---~~~~v~~---------- 550 (790)
... ..+|...|.+++|+ +++|++++ |+.|++||+.+++.+..+.. +...+.+
T Consensus 174 ---------~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 241 (420)
T 3vl1_A 174 ---------PRT---LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ 241 (420)
T ss_dssp ---------CEE---EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS
T ss_pred ---------ceE---EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce
Confidence 111 12699999999999 88999998 99999999999999988874 3334444
Q ss_pred -----------EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEc-CCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECC
Q 003871 551 -----------FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAV 616 (790)
Q Consensus 551 -----------l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~-~h~~~v~~l~~spdg~-~l~s~s~dg~I~vwd~~ 616 (790)
++|+|++ .+++|+.||.|++||+++++....+. +|...|.+++|+|+++ ++++|+.||.|++||++
T Consensus 242 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 321 (420)
T 3vl1_A 242 LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR 321 (420)
T ss_dssp CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence 4557899 99999999999999999998777764 4889999999999998 99999999999999999
Q ss_pred CCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCcee---------eeecCCCCCCCeEEE
Q 003871 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT---------SQLVPDKMDLPITYA 686 (790)
Q Consensus 617 ~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~---------~~~~~~~h~~~v~~l 686 (790)
+++. ++..+..+|. ..+.++.+ |++++|+++ .|+.|++||+...... ..+. .|...|.++
T Consensus 322 ~~~~----~~~~~~~~~~---~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~ 391 (420)
T 3vl1_A 322 SPEC----PVGEFLINEG---TPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLV--SNDDAVSQF 391 (420)
T ss_dssp CTTS----CSEEEEESTT---SCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEEC--CSSCCCCEE
T ss_pred CCcC----chhhhhccCC---CCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEc--cCCcceEEE
Confidence 8542 2333444454 57888855 577788886 8999999998763221 1221 357889999
Q ss_pred EEecCCC---EEEEEEcCCeEEEEECCC
Q 003871 687 TYSCDGK---CIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 687 ~~s~dg~---~l~sgs~dg~i~vwd~~~ 711 (790)
+|+|+++ .+++++.+|.+.+|+++.
T Consensus 392 ~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 392 CYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEccCCCCcceEEEEcCCceEEEEeccC
Confidence 9999999 788888999999999864
No 60
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=332.99 Aligned_cols=315 Identities=11% Similarity=0.022 Sum_probs=223.7
Q ss_pred eeccCCCceEeeeccccCCCCcee---eeeccCCCCCCceEEEEEcCC------CCEEEEEeCCCcEEEEecCCCCcccc
Q 003871 408 VCAKSLEKSVNLKLQLINEPSECR---TLLLPDNSFGGRVVRLIYSHS------GDFLVALTQTATHKLWKWQSNKQSLE 478 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~~~~~~~---~~~l~~~~h~~~V~~l~~spd------g~~l~s~~~dg~i~vw~~~~~~~~~g 478 (790)
++++.|++|+||++.. +.+. ...+ .+|.+.|.+++|+|+ +.+||+++.||+|++||+..+....+
T Consensus 177 aS~s~D~tI~iWd~~~----~~~~~~~~~~l--~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~ 250 (524)
T 2j04_B 177 DKEKHSSCIQIFKMNT----STLHCVKVQTI--VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH 250 (524)
T ss_dssp -----CEEEEEEEEET----TTCCEEEEEEE--EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred ccCCCCceEEEEEccC----CCCCceEEEEE--EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence 7788999999999974 3221 1111 247889999999997 57999999999999999976432000
Q ss_pred ccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEec-CCeEEEEECCCCc-EEEEEcCCCCCeEEE--EE
Q 003871 479 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATYF--IL 553 (790)
Q Consensus 479 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~-~~~~~~~~~~~v~~l--~~ 553 (790)
.. ...... .. ...+|...|++++|+ +..|++|+ ||+|++||+.++. ....+.+|...|.++ +|
T Consensus 251 ~~--------~~~~~p-~~---~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~ 318 (524)
T 2j04_B 251 VF--------KMCEKP-SL---TLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAY 318 (524)
T ss_dssp EE--------ECCCSC-SE---EECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEEC
T ss_pred cc--------eeecCc-eE---EEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEc
Confidence 00 000000 00 112688999999999 77899999 9999999998764 455688999999999 57
Q ss_pred cCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCC--CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeee
Q 003871 554 LPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 629 (790)
Q Consensus 554 s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~ 629 (790)
+|+| +|++|+.|++|++||++++++...+.+|.. .|.+++|+|+++.+++++.|++|++||++++.. +.++
T Consensus 319 s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~-----~~~l 393 (524)
T 2j04_B 319 SDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA-----VHPL 393 (524)
T ss_dssp CTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC-----CEEE
T ss_pred CCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc-----ceee
Confidence 8886 889999999999999998887777777653 588999999999999999999999999998542 2212
Q ss_pred ccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCC---CCCCCeEEEEEecCCCEEEEEEcCCeEE
Q 003871 630 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPD---KMDLPITYATYSCDGKCIYVSCKSGHVK 705 (790)
Q Consensus 630 ~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~---~h~~~v~~l~~s~dg~~l~sgs~dg~i~ 705 (790)
.+|. +.|++++|+|+|++|++| .|++|++||+..+ .+...... .+...+.+++|+|+|+.+. .. +.++
T Consensus 394 -~gH~---~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~--~~~~ 465 (524)
T 2j04_B 394 -VSRE---TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-ID--SSYE 465 (524)
T ss_dssp -EECS---SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-EC--CCCC
T ss_pred -ecCC---CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-cc--CCce
Confidence 2466 799999999999999985 8999999998643 32222110 1123578999999998552 22 2233
Q ss_pred EEECC-CCeEEEEeccccccCCCCcccccceEEEEEecCCC---CEEEEEeCCCcEEEEecCC
Q 003871 706 VFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 706 vwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~---~~las~s~Dg~i~iW~~~~ 764 (790)
+|+.. ++.....+. || ...|+ +|+|+| ++ ..+|+|+.||.|+||++.-
T Consensus 466 ~~~~~~~g~~~~~l~-------gh-~~~V~--~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 466 VYPLTVNDVSKAKID-------AH-GINIT--CTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCC--------------------C-CCSCC--CEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred ecccccCCcceeeec-------CC-CceEE--EEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 44433 344444444 55 45777 999999 64 4999999999999999854
No 61
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.3e-34 Score=309.87 Aligned_cols=297 Identities=9% Similarity=0.075 Sum_probs=239.9
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-C
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G 516 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~ 516 (790)
.+|.+.|.+++|+| ++|++++.||.|++|++.+.... ......... .+|...|.+++|+ .
T Consensus 13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~---------------~~~~~~~~~--~~h~~~v~~~~~~~~ 73 (397)
T 1sq9_A 13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE---------------NPKDKSYSH--FVHKSGLHHVDVLQA 73 (397)
T ss_dssp SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC---------------CGGGGEEEE--ECCTTCEEEEEEEEE
T ss_pred hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc---------------cCCCcceEE--ecCCCcEEEEEEecc
Confidence 47999999999999 79999999999999999875420 000011111 2689999999999 6
Q ss_pred --------cEEEEec-CCeEEEEECCCCcE-----EEEEcCC-----CCCeEEEEEc----CCC-e-EEEEeCCCcEEEE
Q 003871 517 --------SHLFSAS-GGKISIFSLETFQT-----LATFANP-----PPIATYFILL----PQD-L-FAFGFDDSSILVH 571 (790)
Q Consensus 517 --------~~l~s~s-dg~I~vwd~~~~~~-----~~~~~~~-----~~~v~~l~~s----~~g-~-l~sgs~dg~I~iw 571 (790)
.+|++++ ||.|++||+.+++. ...+..| ...|.+++|+ |++ . +++|+.||.|++|
T Consensus 74 ~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 153 (397)
T 1sq9_A 74 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 153 (397)
T ss_dssp EETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEE
T ss_pred cccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEE
Confidence 6888888 99999999998887 8888888 5899999999 999 8 9999999999999
Q ss_pred eCCC------CceEE-----EE-------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeecc--
Q 003871 572 CPCT------KKTKA-----KL-------KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-- 631 (790)
Q Consensus 572 d~~~------~~~~~-----~l-------~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~-- 631 (790)
|+.+ ++.+. .+ ..|...|.+++|+|++ ++++++.|+.|++||+++++. +..+..
T Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~ 227 (397)
T 1sq9_A 154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP-----LYNFESQH 227 (397)
T ss_dssp EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE-----EEEEECCC
T ss_pred eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce-----eEEEeccc
Confidence 9998 66655 66 4488999999999999 999999999999999998543 332222
Q ss_pred CC---CCCCCCeEEEEEeCCCCEEEEE-eC---CcEEEEECCCCceeeeecCCC-----------CCCCeEEEEEecCCC
Q 003871 632 GL---VPETTIVNHIQFHPDQIHLLSI-HE---GQIDVYEAPTLNHTSQLVPDK-----------MDLPITYATYSCDGK 693 (790)
Q Consensus 632 ~~---~~~~~~v~~i~~sp~~~~l~~~-~d---g~I~iwd~~~~~~~~~~~~~~-----------h~~~v~~l~~s~dg~ 693 (790)
+| . ..|.+++|+|++.+|+++ .| +.|++||+++++.+..+.... |...|.+++|+|+++
T Consensus 228 ~h~~~~---~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 304 (397)
T 1sq9_A 228 SMINNS---NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 304 (397)
T ss_dssp ---CCC---CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS
T ss_pred cccccC---CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC
Confidence 14 4 689999999999999995 78 899999999999988886421 688999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEeccccccCCCC--------------cccccceEEEEEecCCC----------CEEE
Q 003871 694 CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT--------------ISLELYPLVIAAHPLEP----------NRIA 749 (790)
Q Consensus 694 ~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh--------------~~~~v~~~~v~~sp~d~----------~~la 749 (790)
+|++++.||.|++||+.+++.+..+...... .+| |...|. +++|+| ++ ++|+
T Consensus 305 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~v~--~~~~~~-~g~~~~~~~~~~~~l~ 380 (397)
T 1sq9_A 305 TLCSAGWDGKLRFWDVKTKERITTLNMHCDD-IEIEEDILAVDEHGDSLAEPGVF--DVKFLK-KGWRSGMGADLNESLC 380 (397)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCGGG-CSSGGGCCCBCTTSCBCSSCCEE--EEEEEC-TTTSBSTTCTTSCEEE
T ss_pred EEEEEeCCCeEEEEEcCCCceeEEEecccCc-ccchhhhhccccccccccCCcee--EEEecc-ccccccccccccceEE
Confidence 9999999999999999999998887621100 011 144566 999999 77 7999
Q ss_pred EEeCCCcEEEEecCCCc
Q 003871 750 LGLTNGRVHVIEPLESE 766 (790)
Q Consensus 750 s~s~Dg~i~iW~~~~~~ 766 (790)
+++.||.|++|++.+|+
T Consensus 381 s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 381 CVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEETTTEEEEEEEEC--
T ss_pred EecCCCcEEEEEcCCCC
Confidence 99999999999998864
No 62
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.9e-34 Score=310.19 Aligned_cols=306 Identities=11% Similarity=0.089 Sum_probs=242.0
Q ss_pred eccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCcccceeccCCCceEeeeccccCCCC
Q 003871 350 DFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTS-LPDADSAVCAKSLEKSVNLKLQLINEPS 428 (790)
Q Consensus 350 iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg-~~la~~~at~s~d~~i~iwd~~~~~~~~ 428 (790)
+|+....... ..+.+|...| ++++|+ |+| +++ ++|+.|+.|++||+.. .
T Consensus 57 ~~~~~~~~~~--------~~~~~h~~~v-------~~~~~~-------~~~~~~l----~s~~~dg~i~iwd~~~----~ 106 (383)
T 3ei3_B 57 IRSLKSYKLH--------RTASPFDRRV-------TSLEWH-------PTHPTTV----AVGSKGGDIILWDYDV----Q 106 (383)
T ss_dssp HHHHTTCEEE--------EEECCCSSCE-------EEEEEC-------SSCTTEE----EEEEBTSCEEEEETTS----T
T ss_pred cccccccceE--------EeccCCCCCE-------EEEEEC-------CCCCCEE----EEEcCCCeEEEEeCCC----c
Confidence 4455455554 7778999999 999999 999 888 9999999999999974 3
Q ss_pred ceeeeeccCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCC
Q 003871 429 ECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD 507 (790)
Q Consensus 429 ~~~~~~l~~~~h~~~V~~l~~sp-dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 507 (790)
..... +...+|...|.+++|+| ++++|++++.|+.|++||+.+.. ........++..
T Consensus 107 ~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---------------------~~~~~~~~~~~~ 164 (383)
T 3ei3_B 107 NKTSF-IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV---------------------IQVFAKTDSWDY 164 (383)
T ss_dssp TCEEE-ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE---------------------EEEEECCCCSSC
T ss_pred cccee-eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc---------------------eEEEeccCCCCC
Confidence 33221 12236999999999999 78999999999999999987521 111112224668
Q ss_pred CeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC----Cce
Q 003871 508 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT----KKT 578 (790)
Q Consensus 508 ~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~----~~~ 578 (790)
.|.+++|+ ++++++++ |+.|++||+ +++.+..+.+|...|.+++|+|++ .+++|+.|+.|++||+++ +..
T Consensus 165 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 243 (383)
T 3ei3_B 165 WYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY 243 (383)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE
T ss_pred CeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce
Confidence 89999999 88999999 999999999 588899999999999999999999 899999999999999987 566
Q ss_pred EEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeee-eccCCCC-------CCCCeEEEEEeCCC
Q 003871 579 KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-FQTGLVP-------ETTIVNHIQFHPDQ 649 (790)
Q Consensus 579 ~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~-~~~~~~~-------~~~~v~~i~~sp~~ 649 (790)
+..+ +|...|.+++|+| ++++|++++.|+.|++||+++++......... ....|.. +.+.+..++|+|++
T Consensus 244 ~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg 322 (383)
T 3ei3_B 244 IAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD 322 (383)
T ss_dssp EEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT
T ss_pred EEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCc
Confidence 6666 6999999999999 99999999999999999999865432111100 0001110 01244456666666
Q ss_pred CEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 650 IHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 650 ~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
++ ..+.|+.|++||+.+++.+..+..+.|...+..++|+|++++|++|+ ||.|++||+++
T Consensus 323 ~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 323 QL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 66 22479999999999999999997755678888889999999999997 99999999875
No 63
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.7e-34 Score=318.62 Aligned_cols=290 Identities=16% Similarity=0.210 Sum_probs=225.3
Q ss_pred CCCCceEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 439 SFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 439 ~h~~~V~~l~~sp-dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
+|...|++++|+| ++++||+|+.||.|+|||+.++.. ... ....+|.+.|++++|+
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-------------------~~~--~~~~gH~~~V~~l~f~p~ 175 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-------------------PTF--IKGIGAGGSITGLKFNPL 175 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-------------------CEE--ECCCSSSCCCCEEEECSS
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-------------------eeE--EEccCCCCCEEEEEEeCC
Confidence 4789999999999 567899999999999999876432 011 1123799999999998
Q ss_pred -CcEEEEec-CCeEEEEECCCCcEEEEEcC--CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEE
Q 003871 516 -GSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 590 (790)
Q Consensus 516 -~~~l~s~s-dg~I~vwd~~~~~~~~~~~~--~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~ 590 (790)
+++|++++ ||+|++||++++........ +...+.+++|+|++ +|++|+.||.|++||++ ++.+..+.+|...|+
T Consensus 176 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~ 254 (435)
T 4e54_B 176 NTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVT 254 (435)
T ss_dssp CTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEE
T ss_pred CCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEE
Confidence 67999999 99999999986654333332 33457899999999 99999999999999986 556778889999999
Q ss_pred EEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCC
Q 003871 591 CLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL 668 (790)
Q Consensus 591 ~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~ 668 (790)
+++|+|+++ ++++|+.|++|++||+++++... .+. ...+|. ..|++++|+|+|.+|+++ .|+.|++||+.++
T Consensus 255 ~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~--~~~-~~~~h~---~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 255 HVALNPCCDWFLATASVDQTVKIWDLRQVRGKA--SFL-YSLPHR---HPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp EEEECTTCSSEEEEEETTSBCCEEETTTCCSSS--CCS-BCCBCS---SCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred eeeecCCCceEEEEecCcceeeEEecccccccc--eEE-Eeeecc---ccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 999999876 78899999999999998854321 111 223455 799999999999999995 8999999999998
Q ss_pred ceeeeecCCCC----CCCeEEEEEecCCCEEEEEE------------cCCeEEEEECCCCeEEEEeccccccCCCCcccc
Q 003871 669 NHTSQLVPDKM----DLPITYATYSCDGKCIYVSC------------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 732 (790)
Q Consensus 669 ~~~~~~~~~~h----~~~v~~l~~s~dg~~l~sgs------------~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~ 732 (790)
.....+..+.+ ...+....|+|++.++++++ .++.|++||..+++.+..+. ++|...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~-------~~~~~~ 401 (435)
T 4e54_B 329 DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY-------DPESSG 401 (435)
T ss_dssp SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC-------CSSCCC
T ss_pred ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe-------CCCCCc
Confidence 88776654321 12344567888877777664 23679999999999888764 233555
Q ss_pred cceEEE-EEecCCCCEEEEEeCCCcEEEEecCCCcc
Q 003871 733 LYPLVI-AAHPLEPNRIALGLTNGRVHVIEPLESEV 767 (790)
Q Consensus 733 v~~~~v-~~sp~d~~~las~s~Dg~i~iW~~~~~~~ 767 (790)
|. ++ +|+| +|.+||+|+ |++|+||++.+++.
T Consensus 402 v~--s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 402 IS--SLNEFNP-MGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CC--CEEEECT-TSSCEEEEC-SSEEEECCCC----
T ss_pred EE--EEEEECC-CCCEEEEEc-CCcEEEEECCcCee
Confidence 65 55 6999 899999876 88999999998864
No 64
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.6e-33 Score=304.31 Aligned_cols=293 Identities=12% Similarity=0.109 Sum_probs=219.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCC-------cEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEE
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTA-------THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 513 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg-------~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~ 513 (790)
..+|++++|+|||++|++||.+. .|++|++........... .........+|...|.+++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~v~s~~ 80 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF-------------HILSEFALEDNDDSPTAID 80 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE-------------EEEEEEECCTTSCCCCEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeee-------------eeeeEEEccCCCCceEEEE
Confidence 46899999999999999997643 599999876443000000 0011111236788899999
Q ss_pred ecCcEEEEe-----------c-CCeEEEEECCCCcEE----EEE-----cCCCCCeEEEEEcCCC-eEEE--EeCCCcEE
Q 003871 514 LRGSHLFSA-----------S-GGKISIFSLETFQTL----ATF-----ANPPPIATYFILLPQD-LFAF--GFDDSSIL 569 (790)
Q Consensus 514 ~s~~~l~s~-----------s-dg~I~vwd~~~~~~~----~~~-----~~~~~~v~~l~~s~~g-~l~s--gs~dg~I~ 569 (790)
++++.+++| + |+.+++|++.+.... ... ..+...+.+++|+||| ++++ ++.|++|+
T Consensus 81 ~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 81 ASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp EETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred eCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 986666654 3 678999998764321 111 1234568899999999 6654 45789999
Q ss_pred EEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCC
Q 003871 570 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 649 (790)
Q Consensus 570 iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~ 649 (790)
+||+.+++.+..+. |.+.|.+++|+|||+++++++.+ .+++|+..+++.. ......+|. ..|.+++|+|++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~----~~~~~~~~~---~~v~~v~fspdg 231 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCI----ARKTDFDKN---WSLSKINFIADD 231 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEE----EEECCCCTT---EEEEEEEEEETT
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcce----eeeecCCCC---CCEEEEEEcCCC
Confidence 99999999988886 77889999999999999999855 5667776665432 222334455 689999999999
Q ss_pred CEEEEE-eCC----cEEEEECCCCcee--eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecccc
Q 003871 650 IHLLSI-HEG----QIDVYEAPTLNHT--SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA 722 (790)
Q Consensus 650 ~~l~~~-~dg----~I~iwd~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~ 722 (790)
.+++++ .|+ .+++||+...... .......|...|++++|+|||++||+|+.|++|+|||+.+++++..+..
T Consensus 232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-- 309 (365)
T 4h5i_A 232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-- 309 (365)
T ss_dssp EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT--
T ss_pred CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC--
Confidence 999984 555 5888998765432 1112224688999999999999999999999999999999998877531
Q ss_pred ccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 723 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 723 ~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
|| ...|+ +++|+| ||++|||||.|++|+||++...
T Consensus 310 ----gH-~~~V~--~v~fSp-dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 310 ----AH-SFAIT--EVTISP-DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ----SS-SSCEE--EEEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred ----cc-cCCEE--EEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 56 55677 999999 8999999999999999999654
No 65
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.6e-33 Score=303.78 Aligned_cols=292 Identities=14% Similarity=0.171 Sum_probs=235.4
Q ss_pred CCCCCceEEEEEcCC----CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEE
Q 003871 438 NSFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 513 (790)
Q Consensus 438 ~~h~~~V~~l~~spd----g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~ 513 (790)
.+|...|.+++|+|+ ...+++++.++.|++|++.++.. . ..+.......|...|.+++
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~-----~-------------~~~~~~~~~~~~~~v~~~~ 76 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE-----I-------------RLLQSYVDADADENFYTCA 76 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC-----E-------------EEEEEEECSCTTCCEEEEE
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE-----E-------------EeeeeccccCCCCcEEEEE
Confidence 479999999999984 55677777788999999886433 0 0111111124778999999
Q ss_pred ec-C-----cEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEEE--
Q 003871 514 LR-G-----SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL-- 582 (790)
Q Consensus 514 ~s-~-----~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~-~g-~l~sgs~dg~I~iwd~~~~~~~~~l-- 582 (790)
|+ . .+|++++ ||.|++||+.+++.+..+.+|...|.+++|+| ++ .+++|+.||.|++||+.+++.+..+
T Consensus 77 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 77 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp EEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred eccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 99 3 4788888 99999999999999999999999999999999 77 9999999999999999999998888
Q ss_pred -cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeecee----------------------eeeeccCCCCCCCC
Q 003871 583 -KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF----------------------LHSFQTGLVPETTI 639 (790)
Q Consensus 583 -~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~----------------------l~~~~~~~~~~~~~ 639 (790)
.+|...|.+++|+|++++|++++.|+.|++||+++++...... ......+|. ..
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 233 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHR---NY 233 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCS---SC
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCc---ce
Confidence 6899999999999999999999999999999999854321100 000112244 78
Q ss_pred eEEEEEeCCCCEEEEE-eCCcEEEEECCCCce--------------eeeecCCCCCCCeEEEEEecC--CCEEEEEEcCC
Q 003871 640 VNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH--------------TSQLVPDKMDLPITYATYSCD--GKCIYVSCKSG 702 (790)
Q Consensus 640 v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~--------------~~~~~~~~h~~~v~~l~~s~d--g~~l~sgs~dg 702 (790)
|.+++|+ +.+++++ .|+.|++||+.++.. +..+.. |...|.+++|+|+ +++|++|+.||
T Consensus 234 v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg 309 (366)
T 3k26_A 234 VDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKMLALGNQVG 309 (366)
T ss_dssp CCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSEEEEECTTS
T ss_pred EEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcEEEEEecCC
Confidence 9999999 6688885 899999999987654 455543 6788999999999 99999999999
Q ss_pred eEEEEECCCCeEE----EEeccccccCCCC-cccccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 703 HVKVFDTSTLELR----CQINLTAYAQPGT-ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 703 ~i~vwd~~~~~~~----~~~~~~~~~~~gh-~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
.|++||+.+++.. ..+. +| +...|. +++|+| ++++|++++.||.|++||+.+
T Consensus 310 ~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~v~--~~~~s~-~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 310 KLYVWDLEVEDPHKAKCTTLT-------HHKCGAAIR--QTSFSR-DSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CEEEEECCSSSGGGCEEEEEC-------CTTCCSCEE--EEEECT-TSSEEEEEETTSEEEEEEC--
T ss_pred cEEEEECCCCCCccccceEEc-------ccccCCceE--EEEeCC-CCCeEEEEeCCCEEEEEEecC
Confidence 9999999998633 3443 33 144566 999999 899999999999999999863
No 66
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=304.91 Aligned_cols=288 Identities=12% Similarity=0.097 Sum_probs=244.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
..+.+|.+.| ++++|+ |||+++ ++|+.|+.|++||+.. +...... .+|...|.++
T Consensus 26 ~~l~~h~~~v-------~~~~~s-------~~~~~l----~~~~~dg~i~vwd~~~----~~~~~~~---~~h~~~v~~~ 80 (369)
T 3zwl_B 26 IKLTGHERPL-------TQVKYN-------KEGDLL----FSCSKDSSASVWYSLN----GERLGTL---DGHTGTIWSI 80 (369)
T ss_dssp EEEECCSSCE-------EEEEEC-------TTSCEE----EEEESSSCEEEEETTT----CCEEEEE---CCCSSCEEEE
T ss_pred EEEEEeeceE-------EEEEEc-------CCCCEE----EEEeCCCEEEEEeCCC----chhhhhh---hhcCCcEEEE
Confidence 5578999999 999999 999999 9999999999999973 3333322 3699999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-C
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 524 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-d 524 (790)
+|+|++++|++++.||.|++||+.++.. .... .+...|.+++|+ +.++++++ +
T Consensus 81 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------------------~~~~---~~~~~v~~~~~~~~~~~l~~~~~~ 136 (369)
T 3zwl_B 81 DVDCFTKYCVTGSADYSIKLWDVSNGQC---------------------VATW---KSPVPVKRVEFSPCGNYFLAILDN 136 (369)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCE---------------------EEEE---ECSSCEEEEEECTTSSEEEEEECC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcE---------------------EEEe---ecCCCeEEEEEccCCCEEEEecCC
Confidence 9999999999999999999999876433 2211 277899999999 88888887 7
Q ss_pred -----CeEEEEECCCCc-----------EEEEEcCCCC--CeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-CceEEEEcC
Q 003871 525 -----GKISIFSLETFQ-----------TLATFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKAKLKG 584 (790)
Q Consensus 525 -----g~I~vwd~~~~~-----------~~~~~~~~~~--~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~-~~~~~~l~~ 584 (790)
+.|++||+.++. ....+..+.. .+.+++|+|++ .+++|+.||.|++||+.+ ++.+..+..
T Consensus 137 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 216 (369)
T 3zwl_B 137 VMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL 216 (369)
T ss_dssp BTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC
T ss_pred ccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec
Confidence 899999997653 3344455555 89999999999 999999999999999998 788888999
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCC-----
Q 003871 585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG----- 658 (790)
Q Consensus 585 h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg----- 658 (790)
|...|.+++|+|++++|++++.|+.|++||+++++.. ..+. +. ..+.+++|+|++++++++ .++
T Consensus 217 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-----~~~~--~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (369)
T 3zwl_B 217 HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL-----KKYE--TD---CPLNTAVITPLKEFIILGGGQEAKDVT 286 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-----EEEE--CS---SCEEEEEECSSSSEEEEEECCC-----
T ss_pred CCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee-----eeec--CC---CCceeEEecCCCceEEEeecCCCceEE
Confidence 9999999999999999999999999999999986533 2222 22 589999999999999985 555
Q ss_pred ---------cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003871 659 ---------QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC 716 (790)
Q Consensus 659 ---------~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~ 716 (790)
.+++||..+++.+..+.. |...|.+++|+|++++|++++.||.|++|++.++....
T Consensus 287 ~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 287 TTSANEGKFEARFYHKIFEEEIGRVQG--HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp --------CEEEEEETTTCCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred EEecCCCcceeEEEecCCCcchhheec--ccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence 799999999999988865 68999999999999999999999999999998765443
No 67
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.2e-35 Score=322.40 Aligned_cols=298 Identities=12% Similarity=0.109 Sum_probs=224.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRES-TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVR 446 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~-dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~ 446 (790)
....+|...| ++++|+ | ++++| |+|+.||+|+|||+.. ......+. ..+|.+.|++
T Consensus 113 ~~~~~~~~~V-------~~l~~~-------P~~~~~l----asGs~dg~i~lWd~~~---~~~~~~~~--~~gH~~~V~~ 169 (435)
T 4e54_B 113 QKAAPFDRRA-------TSLAWH-------PTHPSTV----AVGSKGGDIMLWNFGI---KDKPTFIK--GIGAGGSITG 169 (435)
T ss_dssp CEEEECSSCE-------EEEEEC-------SSCTTCE----EEEETTSCEEEECSSC---CSCCEEEC--CCSSSCCCCE
T ss_pred ccCCCCCCCE-------EEEEEe-------CCCCCEE----EEEeCCCEEEEEECCC---CCceeEEE--ccCCCCCEEE
Confidence 4445688888 999999 8 45677 9999999999999974 12222222 2479999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec
Q 003871 447 LIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 523 (790)
Q Consensus 447 l~~sp-dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s 523 (790)
++|+| ++++|++++.||+|++||+.+... ........+...+.+++|+ +.+|++|+
T Consensus 170 l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 228 (435)
T 4e54_B 170 LKFNPLNTNQFYASSMEGTTRLQDFKGNIL---------------------RVFASSDTINIWFCSLDVSASSRMVVTGD 228 (435)
T ss_dssp EEECSSCTTEEEEECSSSCEEEEETTSCEE---------------------EEEECCSSCSCCCCCEEEETTTTEEEEEC
T ss_pred EEEeCCCCCEEEEEeCCCEEEEeeccCCce---------------------eEEeccCCCCccEEEEEECCCCCEEEEEe
Confidence 99998 789999999999999999875321 1111112355668889999 88999999
Q ss_pred -CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEE---EcCCCCCEEEEEEeCC
Q 003871 524 -GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK---LKGHQNRITCLAYSLS 597 (790)
Q Consensus 524 -dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~---l~~h~~~v~~l~~spd 597 (790)
||.|++||++ ++.+..+.+|...|.+++|+|++ ++++|+.|+.|++||+++++.... ..+|...|++++|+|+
T Consensus 229 ~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spd 307 (435)
T 4e54_B 229 NVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD 307 (435)
T ss_dssp SSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTT
T ss_pred CCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCC
Confidence 9999999996 56677888999999999999998 788999999999999987754433 3569999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-------------eCCcEEEEE
Q 003871 598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-------------HEGQIDVYE 664 (790)
Q Consensus 598 g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-------------~dg~I~iwd 664 (790)
|++|++++.|++|++||+.+++............... ..+....|+|++..++++ .++.|++||
T Consensus 308 g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd 384 (435)
T 4e54_B 308 GARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH---LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFD 384 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSS---SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEEC
T ss_pred CCeeEEEcCCCEEEEEECCCCccceEEeccccccccc---ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEE
Confidence 9999999999999999999865432211110000000 123344566666555553 235799999
Q ss_pred CCCCceeeeecCCCCCCCeEEE-EEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 003871 665 APTLNHTSQLVPDKMDLPITYA-TYSCDGKCIYVSCKSGHVKVFDTSTLELR 715 (790)
Q Consensus 665 ~~~~~~~~~~~~~~h~~~v~~l-~~s~dg~~l~sgs~dg~i~vwd~~~~~~~ 715 (790)
..+++.+..+.. .|...|.++ +|+|+|++|++|+ |+.|+||++++++.+
T Consensus 385 ~~~g~~~~~l~~-~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 385 GNSGKMMCQLYD-PESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp SSSCCEEEEECC-SSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred CCCCcEEEEEeC-CCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 999999888764 367788887 6999999999876 889999999998754
No 68
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1e-33 Score=315.01 Aligned_cols=322 Identities=17% Similarity=0.175 Sum_probs=268.7
Q ss_pred chhhhhhhhccCCCccccccccCCC-----CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 316 KSRLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (790)
Q Consensus 316 ~~~~~~~l~~h~~~v~v~~i~fspd-----~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs 390 (790)
..+....+.+|.+.+ +.++.++.+ +.|++|+ +||..+++++ ..+.+|.+.| ++++|+
T Consensus 107 ~~~~~~~l~~h~~~v-~~~~~~~g~~l~sg~~dg~i~--vwd~~~~~~~--------~~~~~h~~~v-------~~~~~~ 168 (445)
T 2ovr_B 107 ELKSPKVLKGHDDHV-ITCLQFCGNRIVSGSDDNTLK--VWSAVTGKCL--------RTLVGHTGGV-------WSSQMR 168 (445)
T ss_dssp CCCCCEEEECSTTSC-EEEEEEETTEEEEEETTSCEE--EEETTTCCEE--------EECCCCSSCE-------EEEEEE
T ss_pred CcceeEEecccCCCc-EEEEEEcCCEEEEEECCCcEE--EEECCCCcEE--------EEEcCCCCCE-------EEEEec
Confidence 334456788999876 448888776 8899999 9999999987 8899999999 999997
Q ss_pred CCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 003871 391 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 470 (790)
Q Consensus 391 ~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~ 470 (790)
++.+ ++|+.||+|++||+.. +.+... + .+|...|.+++|+ ++++++++.||.|++||+
T Consensus 169 ---------~~~l----~s~~~dg~i~vwd~~~----~~~~~~-~--~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~ 226 (445)
T 2ovr_B 169 ---------DNII----ISGSTDRTLKVWNAET----GECIHT-L--YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI 226 (445)
T ss_dssp ---------TTEE----EEEETTSCEEEEETTT----TEEEEE-E--CCCSSCEEEEEEE--TTEEEEEETTSEEEEEES
T ss_pred ---------CCEE----EEEeCCCeEEEEECCc----CcEEEE-E--CCCCCcEEEEEec--CCEEEEEeCCCEEEEEEC
Confidence 6788 9999999999999973 443332 2 3699999999995 568999999999999998
Q ss_pred CCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeE
Q 003871 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT 549 (790)
Q Consensus 471 ~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~ 549 (790)
.++.. .... .+|...|.+++|.++++++++ ||.|++||+.+++.+..+.+|...|.
T Consensus 227 ~~~~~---------------------~~~~--~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 283 (445)
T 2ovr_B 227 ETGQC---------------------LHVL--MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 283 (445)
T ss_dssp SSCCE---------------------EEEE--ECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE
T ss_pred CCCcE---------------------EEEE--cCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceE
Confidence 76433 1111 268999999999988888888 99999999999999999999999999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeee
Q 003871 550 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628 (790)
Q Consensus 550 ~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~ 628 (790)
+++| ++ .+++|+.||.|++||+.+++.+..+.+|...+.++.++ ++++++|+.||.|++||+++++... .+.
T Consensus 284 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~--~~~- 356 (445)
T 2ovr_B 284 SLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQ--TLQ- 356 (445)
T ss_dssp EEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE--EEC-
T ss_pred EEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEE--EEc-
Confidence 9999 67 99999999999999999999999999999999988875 6799999999999999998865322 111
Q ss_pred eccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeec---CCCCCCCeEEEEEecCCCEEEEEEcCCe-
Q 003871 629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV---PDKMDLPITYATYSCDGKCIYVSCKSGH- 703 (790)
Q Consensus 629 ~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~---~~~h~~~v~~l~~s~dg~~l~sgs~dg~- 703 (790)
....|. ..|.+++|+ +.+++++ .||.|++||+.+++.+..+. ...|...|.+++|+|++.++++|+.||+
T Consensus 357 ~~~~~~---~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~ 431 (445)
T 2ovr_B 357 GPNKHQ---SAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 431 (445)
T ss_dssp STTSCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS
T ss_pred cCCCCC---CCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCC
Confidence 112244 689999996 4688885 89999999999999888773 1235788999999999999999999997
Q ss_pred ---EEEEECCCC
Q 003871 704 ---VKVFDTSTL 712 (790)
Q Consensus 704 ---i~vwd~~~~ 712 (790)
|.+||+...
T Consensus 432 ~~~l~v~df~~~ 443 (445)
T 2ovr_B 432 ETKLLVLDFDVD 443 (445)
T ss_dssp CCEEEEEECCCC
T ss_pred ccEEEEEECCCC
Confidence 999998753
No 69
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.2e-34 Score=306.08 Aligned_cols=286 Identities=14% Similarity=0.160 Sum_probs=230.6
Q ss_pred CCCCCceEEEEEcCCCCEEEEEe-C---CCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEE
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALT-Q---TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 513 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~-~---dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~ 513 (790)
.+|...|.+++|+|+++.+++++ . |+.|++|++.++.. ..... .+|..+|.+++
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~--------------------~~~~~--~~~~~~v~~~~ 72 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL--------------------KLLRE--IEKAKPIKCGT 72 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE--------------------EEEEE--EEESSCEEEEE
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc--------------------cceee--ecccCcEEEEE
Confidence 36999999999999997666544 4 89999999876433 11111 15889999999
Q ss_pred ec-C----cEEEEec-CCeEEEEECCCCc-EEEEEcCCCCCeEEEEE------cCCC-eEEEEeCCCcEEEEeCCCCc-e
Q 003871 514 LR-G----SHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATYFIL------LPQD-LFAFGFDDSSILVHCPCTKK-T 578 (790)
Q Consensus 514 ~s-~----~~l~s~s-dg~I~vwd~~~~~-~~~~~~~~~~~v~~l~~------s~~g-~l~sgs~dg~I~iwd~~~~~-~ 578 (790)
|+ . +++++++ ||.|++||+.+++ .+..+.+|...|.+++| +|++ .+++|+.||.|++||+.+++ .
T Consensus 73 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 73 FGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp CTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC
T ss_pred EcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc
Confidence 99 4 8899998 9999999999988 88899999999999955 6788 99999999999999999886 6
Q ss_pred EEEEcCCCC----CEEEEE----EeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeC---
Q 003871 579 KAKLKGHQN----RITCLA----YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--- 647 (790)
Q Consensus 579 ~~~l~~h~~----~v~~l~----~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp--- 647 (790)
+..+..|.+ .+.+++ |+|+++++++++.|+.|++||+++++.. . ...|. ..|.+++|+|
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~--~~~~~---~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-----W--ETNIK---NGVCSLEFDRKDI 222 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE-----E--EEECS---SCEEEEEESCSSS
T ss_pred ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee-----e--ecCCC---CceEEEEcCCCCC
Confidence 777766554 899998 7889999999999999999999986532 1 12333 6899999999
Q ss_pred CCCEEEEE-eCCcEEEEECCCCceeeeec---CCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCCe---------
Q 003871 648 DQIHLLSI-HEGQIDVYEAPTLNHTSQLV---PDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLE--------- 713 (790)
Q Consensus 648 ~~~~l~~~-~dg~I~iwd~~~~~~~~~~~---~~~h~~~v~~l~~s~dg~-~l~sgs~dg~i~vwd~~~~~--------- 713 (790)
++.+++++ .||.|++||+++++....+. ...|...|.+++|+|+++ ++++|+.||.|++||+.++.
T Consensus 223 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g 302 (357)
T 3i2n_A 223 SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG 302 (357)
T ss_dssp SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTS
T ss_pred CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCC
Confidence 89999985 89999999998776655443 113689999999999998 89999999999999998653
Q ss_pred ----------EEEEeccccccCCCCcccccceEEEEEecCCCCEEE-EEeCCCcEEEEecCCCc
Q 003871 714 ----------LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGLTNGRVHVIEPLESE 766 (790)
Q Consensus 714 ----------~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~la-s~s~Dg~i~iW~~~~~~ 766 (790)
.+..+. +| ...|. +++|+| ++++|+ +++.||.|++|++.+.+
T Consensus 303 ~~~~~~~~~~~~~~~~-------~~-~~~v~--~~~~s~-~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 303 IEMGVAGSVSLLQNVT-------LS-TQPIS--SLDWSP-DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCCCCCCEEEEEEEEE-------CC-SSCEE--EEEECS-SSTTEEEEEETTSEEEEEEECC--
T ss_pred Cccccccccceeeccc-------cC-CCCee--EEEEcC-CCCeEEEEecCCCcEEEEECCCcc
Confidence 233333 44 44666 999999 888887 89999999999998765
No 70
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.1e-33 Score=304.00 Aligned_cols=299 Identities=10% Similarity=0.103 Sum_probs=239.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
.|.++|.+++|+|+|++|++++.|+.|++|++.++.. ..... ..+|...|.+++|+ +
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-------------------~~~~~--~~~h~~~v~~~~~~~~~ 64 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-------------------VQVHE--LKEHNGQVTGVDWAPDS 64 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-------------------EEEEE--EECCSSCEEEEEEETTT
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-------------------Eeeee--ecCCCCcccEEEEeCCC
Confidence 4889999999999999999999999999999876421 01111 12689999999999 8
Q ss_pred cEEEEec-CCeEEEEECCCCcEEEEE--cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce---EEEE-cCCCCC
Q 003871 517 SHLFSAS-GGKISIFSLETFQTLATF--ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT---KAKL-KGHQNR 588 (790)
Q Consensus 517 ~~l~s~s-dg~I~vwd~~~~~~~~~~--~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~---~~~l-~~h~~~ 588 (790)
+++++++ ||.|++||+.+++....+ ..|...|.+++|+|++ ++++|+.||.|++||+.++.. ...+ .+|...
T Consensus 65 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~ 144 (372)
T 1k8k_C 65 NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST 144 (372)
T ss_dssp TEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSC
T ss_pred CEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCC
Confidence 8999998 899999999988755544 5788899999999999 999999999999999988762 3333 668999
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-------------eeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE
Q 003871 589 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-------------LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 655 (790)
Q Consensus 589 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~-------------~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~ 655 (790)
|.+++|+|+++++++++.|+.|++||++.... .....+. ...+|. ..|.+++|+|++.+|+++
T Consensus 145 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~l~~~ 220 (372)
T 1k8k_C 145 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF-ESSSSC---GWVHGVCFSANGSRVAWV 220 (372)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE-ECCCCS---SCEEEEEECSSSSEEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheE-ecCCCC---CeEEEEEECCCCCEEEEE
Confidence 99999999999999999999999999752110 0112333 222454 689999999999999985
Q ss_pred -eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC--CeEEEE--ecc----------
Q 003871 656 -HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST--LELRCQ--INL---------- 720 (790)
Q Consensus 656 -~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~--~~~~~~--~~~---------- 720 (790)
.|+.|++||+++++++..+.. |...|.+++|+|+++++++| .|+.|++|++.+ ++.... +..
T Consensus 221 ~~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (372)
T 1k8k_C 221 SHDSTVCLADADKKMAVATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT 297 (372)
T ss_dssp ETTTEEEEEEGGGTTEEEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------C
T ss_pred eCCCEEEEEECCCCceeEEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcc
Confidence 899999999999999988864 57899999999999988887 899999999988 532111 000
Q ss_pred ------------c--------cccCCCCcccccceEEEEEecCCC---CEEEEEeCCCcEEEEecCCCccc
Q 003871 721 ------------T--------AYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 721 ------------~--------~~~~~gh~~~~v~~~~v~~sp~d~---~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
. .....|| ...|. +++|+|.+| .+|+||+.||.|++|++.+++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~--~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 298 ARERFQNLDKKASSEGSAAAGAGLDSLH-KNSVS--QISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp HHHHHHHCCCCC---------CCCSSSS-SSCEE--EEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred hhhhhhhcccccccccCccccccccccc-cCCcc--eeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 0 1111366 44666 999886477 99999999999999999887654
No 71
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=295.98 Aligned_cols=288 Identities=10% Similarity=0.080 Sum_probs=241.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
+++.+|.+.| ++++| |+++++ ++|+.||.|++||+.. ....... ..|...|.++
T Consensus 12 ~~l~~h~~~v-------~~~~~--------~~~~~l----~s~~~dg~v~vw~~~~----~~~~~~~---~~~~~~v~~~ 65 (313)
T 3odt_A 12 ATLKGHDQDV-------RDVVA--------VDDSKV----ASVSRDGTVRLWSKDD----QWLGTVV---YTGQGFLNSV 65 (313)
T ss_dssp EEECCCSSCE-------EEEEE--------EETTEE----EEEETTSEEEEEEESS----SEEEEEE---EECSSCEEEE
T ss_pred HHhhCCCCCc-------EEEEe--------cCCCEE----EEEEcCCcEEEEECCC----CEEEEEe---ecCCccEEEE
Confidence 7789999999 99998 678889 9999999999999963 4333322 2589999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCe
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGK 526 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~ 526 (790)
+|+|+++++++++.|+.+++|++..... +..... ..+|...|.+++|.++++++++ ||.
T Consensus 66 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~------------------~~~~~~--~~~~~~~i~~~~~~~~~l~~~~~d~~ 125 (313)
T 3odt_A 66 CYDSEKELLLFGGKDTMINGVPLFATSG------------------EDPLYT--LIGHQGNVCSLSFQDGVVISGSWDKT 125 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTCCTT------------------SCC-CE--ECCCSSCEEEEEEETTEEEEEETTSE
T ss_pred EECCCCCEEEEecCCCeEEEEEeeecCC------------------CCcccc--hhhcccCEEEEEecCCEEEEEeCCCC
Confidence 9999999999999999999999765321 111111 1268999999999988888888 999
Q ss_pred EEEEECCCCcEEEEEcCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEEEcC-CCCCEEEEEEeCCCCEEEE
Q 003871 527 ISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVS 603 (790)
Q Consensus 527 I~vwd~~~~~~~~~~~~~~~~v~~l~~s~-~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~-h~~~v~~l~~spdg~~l~s 603 (790)
|++|| .++....+..|...+.+++|+| ++ .+++++.||.|++|| .++....+.. |...+.+++|+|++. +++
T Consensus 126 i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~ 200 (313)
T 3odt_A 126 AKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FIS 200 (313)
T ss_dssp EEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEE
T ss_pred EEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEE
Confidence 99999 6788888999999999999998 77 999999999999999 4567777777 999999999999988 999
Q ss_pred EeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCe
Q 003871 604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPI 683 (790)
Q Consensus 604 ~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v 683 (790)
++.|+.|++||+++++. +..+ .+|. ..|++++|+|++.+++.+.||.|++||+.+++.+..+.. |...|
T Consensus 201 ~~~dg~i~i~d~~~~~~-----~~~~-~~~~---~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~i 269 (313)
T 3odt_A 201 CSNDGLIKLVDMHTGDV-----LRTY-EGHE---SFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITL--PAISI 269 (313)
T ss_dssp EETTSEEEEEETTTCCE-----EEEE-ECCS---SCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEEC--SSSCE
T ss_pred ccCCCeEEEEECCchhh-----hhhh-hcCC---ceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEec--cCceE
Confidence 99999999999998543 3322 3455 689999999999644446999999999999999988865 57899
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 003871 684 TYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 684 ~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~ 718 (790)
.+++|+|+++ +++++.||.|++||+.+++.....
T Consensus 270 ~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 270 WSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred EEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 9999999998 567999999999999988765543
No 72
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-34 Score=316.08 Aligned_cols=326 Identities=12% Similarity=0.062 Sum_probs=248.8
Q ss_pred ccccCCC-CCCCcceeeeccCCCcccccccccCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCcccceec
Q 003871 334 CINVMPN-ANNETISLKDFPTVSNLRYASSILTDKPNQ-EGRPLDASSGDDSNDSSCFNDNNQSRES-TSLPDADSAVCA 410 (790)
Q Consensus 334 ~i~fspd-~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l-~~h~~~v~~~~~~i~~~~fs~~~~~~s~-dg~~la~~~at~ 410 (790)
...|+|+ ..-.... .|+. +|+.+ ..+ .+|.+.| ++++|+ | ||+++ ++|
T Consensus 32 ~~~f~~~~~~~~~~~--~w~~-~g~~~--------~~~~~~h~~~V-------~~~~~s-------~~~~~~l----~s~ 82 (437)
T 3gre_A 32 YKEFGPIQEIVRSPN--MGNL-RGKLI--------ATLMENEPNSI-------TSSAVS-------PGETPYL----ITG 82 (437)
T ss_dssp CGGGCCCCCCCCCCC--GGGC-CCCEE--------EEECTTTTSCE-------EEEEEE-------CSSSCEE----EEE
T ss_pred hhhcCCccccccccc--cccc-cceEE--------eeeccCCCCce-------EEEEEC-------CCCCCEE----EEe
Confidence 3445565 2222233 5774 66666 666 8999999 999999 9 99999 999
Q ss_pred cCCCceEeeeccccCCCCcee-eeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecC---CCCcccccccccccc
Q 003871 411 KSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ---SNKQSLEEENVNMES 486 (790)
Q Consensus 411 s~d~~i~iwd~~~~~~~~~~~-~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~---~~~~~~g~~~~~~~~ 486 (790)
+.|++|++||+.......... ...+ +|...|.+++|+|++++|++++.||.|++||+. ++.. ..
T Consensus 83 s~dg~v~vwd~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-----~~---- 150 (437)
T 3gre_A 83 SDQGVIKIWNLKEIIVGEVYSSSLTY---DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESE-----VK---- 150 (437)
T ss_dssp ETTSEEEEEEHHHHHTTCCCSCSEEE---ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTE-----EE----
T ss_pred cCCceEEEeECcccccCcccceeeec---cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCce-----ee----
Confidence 999999999996411111111 1111 489999999999999999999999999999985 2221 00
Q ss_pred ccccCCCceee-eeccc-CCCCCCeEEEEec----CcEEEEec-CCeEEEEECCCCcEEEEEcC--CCCCeEEEEEcCCC
Q 003871 487 QLYQPSSKLVM-TNDIA-ADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD 557 (790)
Q Consensus 487 ~i~~~~~~~~~-~~~~~-~~~~~~V~~l~~s----~~~l~s~s-dg~I~vwd~~~~~~~~~~~~--~~~~v~~l~~s~~g 557 (790)
...+..+ ...+. .++...+.++.+. +.++++++ |+.|++||+.+++.+..+.. |...|++++|+|++
T Consensus 151 ----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 226 (437)
T 3gre_A 151 ----FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC 226 (437)
T ss_dssp ----EEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS
T ss_pred ----ccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC
Confidence 0000011 11111 1166778888854 77899998 89999999999999999987 78999999999999
Q ss_pred -eEEEEeCCCcEEEEeCCCCceEEEEc-CCCCCEEEEEEeC----CCCEEEEEeCCCcEEEEECCCCceeeceeee----
Q 003871 558 -LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSL----SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH---- 627 (790)
Q Consensus 558 -~l~sgs~dg~I~iwd~~~~~~~~~l~-~h~~~v~~l~~sp----dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~---- 627 (790)
.+++|+.||.|++||+++++.+..+. .|...|.+++|+| ++++|++|+.|+.|++||+++++......-.
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQP 306 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCC
T ss_pred CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCC
Confidence 99999999999999999999998886 6888999996654 6789999999999999999986543221100
Q ss_pred ---ee-c----------cC--CCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCC-------------
Q 003871 628 ---SF-Q----------TG--LVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPD------------- 677 (790)
Q Consensus 628 ---~~-~----------~~--~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~------------- 677 (790)
.+ + .+ |. ..|++++|+ ++++|+++ .|+.|++||+.+++....+..+
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~---~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (437)
T 3gre_A 307 SMEHFLPIEKGLEELNFCGIRSL---NALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVT 382 (437)
T ss_dssp CGGGGSCBCSSGGGCCCCCCCSG---GGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEE
T ss_pred ccceecccccccccceecccccC---CceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEee
Confidence 00 0 11 33 679999999 77888886 7999999999998887776542
Q ss_pred ----------------------CCCCCeEEEEEecC--CCEEEEEEcCCeEEEEE
Q 003871 678 ----------------------KMDLPITYATYSCD--GKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 678 ----------------------~h~~~v~~l~~s~d--g~~l~sgs~dg~i~vwd 708 (790)
.|...|++++|+++ +.+|++|+.||.|++|+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 383 ANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp TTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 17889999999998 78999999999999995
No 73
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-33 Score=304.14 Aligned_cols=278 Identities=15% Similarity=0.204 Sum_probs=229.4
Q ss_pred CCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccc
Q 003871 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 477 (790)
Q Consensus 398 ~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~ 477 (790)
+++..+ ++++.|+.|++||+.. +....... ..|...|.+++|+|+|++|++++.||.|++||+.++..
T Consensus 101 ~s~~~l----~~~~~d~~v~lw~~~~----~~~~~~~~--~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-- 168 (401)
T 4aez_A 101 WSNLNV----VAVALERNVYVWNADS----GSVSALAE--TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK-- 168 (401)
T ss_dssp ECTTSE----EEEEETTEEEEEETTT----CCEEEEEE--CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--
T ss_pred ecCCCE----EEEECCCeEEEeeCCC----CcEeEeee--cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE--
Confidence 336778 8999999999999973 44433221 24889999999999999999999999999999876432
Q ss_pred cccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEECC-CCcEEEEEcCCCCCeEEEEEcC
Q 003871 478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLE-TFQTLATFANPPPIATYFILLP 555 (790)
Q Consensus 478 g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd~~-~~~~~~~~~~~~~~v~~l~~s~ 555 (790)
.... .+|...|.+++|+++++++++ ||.|++||+. .+.....+.+|...|.+++|+|
T Consensus 169 -------------------~~~~--~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 227 (401)
T 4aez_A 169 -------------------LRTM--AGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS 227 (401)
T ss_dssp -------------------EEEE--CCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred -------------------EEEe--cCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC
Confidence 1111 269999999999988999998 9999999998 5677888899999999999999
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCC-CEEEEEe--CCCcEEEEECCCCceeeceeeeeecc
Q 003871 556 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQT 631 (790)
Q Consensus 556 ~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg-~~l~s~s--~dg~I~vwd~~~~~~~~~~~l~~~~~ 631 (790)
++ .+++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .++++|+ .|+.|++||+.+++.. ..+.
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~-----~~~~- 301 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV-----NTVD- 301 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE-----EEEE-
T ss_pred CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE-----EEEe-
Confidence 99 99999999999999999999999999999999999999976 5566655 7999999999986532 2222
Q ss_pred CCCCCCCCeEEEEEeCCCCEEEE--E-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 632 GLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 632 ~~~~~~~~v~~i~~sp~~~~l~~--~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
+. ..|.+++|+|+++++++ | .||.|++||+.+++.........|...|.+++|+|+|++|++++.||.|++|+
T Consensus 302 -~~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 302 -AG---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp -CS---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred -CC---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 22 58999999999999998 3 59999999999877665544345789999999999999999999999999999
Q ss_pred CCCCeEEEEe
Q 003871 709 TSTLELRCQI 718 (790)
Q Consensus 709 ~~~~~~~~~~ 718 (790)
+.+++.+...
T Consensus 378 ~~~~~~~~~~ 387 (401)
T 4aez_A 378 VYDGDHVKRP 387 (401)
T ss_dssp CCC-------
T ss_pred CCCCcccccc
Confidence 9999876654
No 74
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-34 Score=310.93 Aligned_cols=296 Identities=13% Similarity=0.101 Sum_probs=221.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCC--ceeeeeccCCCCCCceEEEEE
Q 003871 372 GRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS--ECRTLLLPDNSFGGRVVRLIY 449 (790)
Q Consensus 372 ~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~--~~~~~~l~~~~h~~~V~~l~~ 449 (790)
.|.++| ++++|+ |||+++ ++|+.|+.|++||+.. + .... .+ .+|...|.+++|
T Consensus 9 ~~~~~v-------~~~~~s-------~~g~~l----~~~~~d~~i~iw~~~~----~~~~~~~-~~--~~h~~~v~~~~~ 63 (377)
T 3dwl_C 9 ILPKPS-------YEHAFN-------SQRTEF----VTTTATNQVELYEQDG----NGWKHAR-TF--SDHDKIVTCVDW 63 (377)
T ss_dssp ECSSCC-------SCCEEC-------SSSSEE----ECCCSSSCBCEEEEET----TEEEECC-CB--CCCSSCEEEEEE
T ss_pred cCCCcE-------EEEEEC-------CCCCEE----EEecCCCEEEEEEccC----CceEEEE-EE--ecCCceEEEEEE
Confidence 356677 999999 999999 9999999999999973 3 2222 12 369999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEE
Q 003871 450 SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISI 529 (790)
Q Consensus 450 spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~v 529 (790)
+|++++|++++.|+.|++||+.++..
T Consensus 64 s~~~~~l~s~s~d~~v~vwd~~~~~~------------------------------------------------------ 89 (377)
T 3dwl_C 64 APKSNRIVTCSQDRNAYVYEKRPDGT------------------------------------------------------ 89 (377)
T ss_dssp CTTTCCEEEEETTSSEEEC------C------------------------------------------------------
T ss_pred eCCCCEEEEEeCCCeEEEEEcCCCCc------------------------------------------------------
Confidence 99999999999999999998765220
Q ss_pred EECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc---eEEEEcC-CCCCEEEEEEeCCCCEEEEE
Q 003871 530 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKG-HQNRITCLAYSLSLNVLVSS 604 (790)
Q Consensus 530 wd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~---~~~~l~~-h~~~v~~l~~spdg~~l~s~ 604 (790)
......+.+|...|.+++|+|++ .|++|+.|+.|++||+++++ ....+.+ |...|++++|+|++++|+++
T Consensus 90 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 90 -----WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp -----CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred -----eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 11234456788899999999999 99999999999999999887 4677887 99999999999999999999
Q ss_pred eCCCcEEEEECCCCcee-------------eceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCce
Q 003871 605 GADAQLCVWDAVGWKKL-------------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH 670 (790)
Q Consensus 605 s~dg~I~vwd~~~~~~~-------------~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~ 670 (790)
+.|++|++||+..+... ....+..+ +|. ..|.+++|+|++++|+++ .|+.|++||+.+++.
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSG---GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCS---SSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCC---ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 99999999999643211 12233323 555 789999999999999985 899999999999887
Q ss_pred ----eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE--EEE---------------------------
Q 003871 671 ----TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL--RCQ--------------------------- 717 (790)
Q Consensus 671 ----~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~--~~~--------------------------- 717 (790)
+..+.. |...|.+++|+|+|++|++|+.|+.+ +|+...+.. ...
T Consensus 240 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (377)
T 3dwl_C 240 PPRALITVKL--SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVS 316 (377)
T ss_dssp CEEECCCEEC--SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----
T ss_pred cceeeEeecC--CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccc
Confidence 666654 68899999999999999998877666 666542210 000
Q ss_pred -------ecc---------ccccCCCCcccccceEEEEEecCCCC---EEEEEeCCCcEEEEec
Q 003871 718 -------INL---------TAYAQPGTISLELYPLVIAAHPLEPN---RIALGLTNGRVHVIEP 762 (790)
Q Consensus 718 -------~~~---------~~~~~~gh~~~~v~~~~v~~sp~d~~---~las~s~Dg~i~iW~~ 762 (790)
+.. ......+| ...|. ++++.+.++. .|+|||.||.|+|||+
T Consensus 317 ~~~~~~~~~~~~~~g~~~~~~~~~~~H-~~~i~--~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 317 FTALRSTFRNMDLKGSSQSISSLPTVH-QNMIA--TLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp --------------------CCCSSSC-SSCEE--EEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccchhhccccccccccCccc-cceeE--EEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000 00011124 55666 8887763444 7999999999999985
No 75
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-32 Score=287.49 Aligned_cols=277 Identities=14% Similarity=0.145 Sum_probs=235.0
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.+|.+.|.+++| |++++|++++.||.|++||+.+... .... ..|...|.+++|+
T Consensus 15 ~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~---------------------~~~~--~~~~~~v~~~~~~~~ 70 (313)
T 3odt_A 15 KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL---------------------GTVV--YTGQGFLNSVCYDSE 70 (313)
T ss_dssp CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE---------------------EEEE--EECSSCEEEEEEETT
T ss_pred hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE---------------------EEEe--ecCCccEEEEEECCC
Confidence 379999999999 9999999999999999999865322 1111 1588999999999
Q ss_pred CcEEEEec-CCeEEEEECCCC---cEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEE
Q 003871 516 GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 590 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~---~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~ 590 (790)
++++++++ ||.|++|++... +....+.+|...|.+++| ++ .+++|+.||.|++|| .++....+..|...+.
T Consensus 71 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 71 KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVW 146 (313)
T ss_dssp TTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEE
T ss_pred CCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCcee
Confidence 88999998 999999998754 567788899999999999 46 999999999999999 6778888999999999
Q ss_pred EEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCC
Q 003871 591 CLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 668 (790)
Q Consensus 591 ~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~ 668 (790)
+++|+| +++++++++.|+.|++||... ....+...|. ..+.+++|+|++. +++ +.|+.|++||++++
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~ 215 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQNDK-------VIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG 215 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTE-------EEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTC
T ss_pred EEEEccCCCCEEEEEECCCCEEEEecCc-------eEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCch
Confidence 999998 999999999999999999432 2332333354 6899999999998 555 68999999999999
Q ss_pred ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEE
Q 003871 669 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 748 (790)
Q Consensus 669 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l 748 (790)
+.+..+.. |...|.+++|+|++ .+++++.||.|++||+.+++....+. +| ...+. +++|+| ++. +
T Consensus 216 ~~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~-------~~-~~~i~--~~~~~~-~~~-~ 280 (313)
T 3odt_A 216 DVLRTYEG--HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT-------LP-AISIW--SVDCMS-NGD-I 280 (313)
T ss_dssp CEEEEEEC--CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE-------CS-SSCEE--EEEECT-TSC-E
T ss_pred hhhhhhhc--CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe-------cc-CceEE--EEEEcc-CCC-E
Confidence 99988864 68999999999999 58899999999999999999888876 33 44566 999999 777 6
Q ss_pred EEEeCCCcEEEEecCCCccc
Q 003871 749 ALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 749 as~s~Dg~i~iW~~~~~~~~ 768 (790)
++++.||.|++|++.+++..
T Consensus 281 ~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 281 IVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EEEETTSCEEEEESCGGGCC
T ss_pred EEEeCCCcEEEEeCCCCcee
Confidence 67899999999999887643
No 76
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3e-33 Score=302.76 Aligned_cols=286 Identities=10% Similarity=0.057 Sum_probs=237.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCC---ceeeeeccCCCCCCceEEE
Q 003871 371 EGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 371 ~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~---~~~~~~l~~~~h~~~V~~l 447 (790)
..|.++| ++++|+ |||+++ ++++.|+.|++||+.. + ....+. +|...|.++
T Consensus 5 ~~~~~~i-------~~~~~s-------~~~~~l----~~~~~d~~v~i~~~~~----~~~~~~~~~~----~h~~~v~~~ 58 (372)
T 1k8k_C 5 SFLVEPI-------SCHAWN-------KDRTQI----AICPNNHEVHIYEKSG----NKWVQVHELK----EHNGQVTGV 58 (372)
T ss_dssp ESCSSCC-------CEEEEC-------TTSSEE----EEECSSSEEEEEEEET----TEEEEEEEEE----CCSSCEEEE
T ss_pred cccCCCe-------EEEEEC-------CCCCEE----EEEeCCCEEEEEeCCC----CcEEeeeeec----CCCCcccEE
Confidence 3488888 999999 999999 9999999999999973 3 333333 699999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-C
Q 003871 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 524 (790)
Q Consensus 448 ~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-d 524 (790)
+|+|++++|++++.|+.|++||+.++.. ........|...|.+++|+ ++++++++ |
T Consensus 59 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~---------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 117 (372)
T 1k8k_C 59 DWAPDSNRIVTCGTDRNAYVWTLKGRTW---------------------KPTLVILRINRAARCVRWAPNEKKFAVGSGS 117 (372)
T ss_dssp EEETTTTEEEEEETTSCEEEEEEETTEE---------------------EEEEECCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeCCCCEEEEEcCCCeEEEEECCCCee---------------------eeeEEeecCCCceeEEEECCCCCEEEEEeCC
Confidence 9999999999999999999999865432 1111123688999999999 88999998 8
Q ss_pred CeEEEEECCCCcE---EEEE-cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeC------------------CCCceEEE
Q 003871 525 GKISIFSLETFQT---LATF-ANPPPIATYFILLPQD-LFAFGFDDSSILVHCP------------------CTKKTKAK 581 (790)
Q Consensus 525 g~I~vwd~~~~~~---~~~~-~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~------------------~~~~~~~~ 581 (790)
+.|++||+.++.. ...+ .+|...|.+++|+|++ .+++|+.||.|++||+ .+++.+..
T Consensus 118 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (372)
T 1k8k_C 118 RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE 197 (372)
T ss_dssp SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE
T ss_pred CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEe
Confidence 9999999988762 3333 5788999999999999 9999999999999995 46788888
Q ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEE
Q 003871 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQID 661 (790)
Q Consensus 582 l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~ 661 (790)
+.+|...|.+++|+|++++|++++.|+.|++||+++++. +..+ ..|. ..|.+++|+|++.+++++.|+.|+
T Consensus 198 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~-~~~~---~~v~~~~~~~~~~~l~~~~d~~i~ 268 (372)
T 1k8k_C 198 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA-----VATL-ASET---LPLLAVTFITESSLVAAGHDCFPV 268 (372)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE-----EEEE-ECSS---CCEEEEEEEETTEEEEEETTSSCE
T ss_pred cCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----eEEE-ccCC---CCeEEEEEecCCCEEEEEeCCeEE
Confidence 999999999999999999999999999999999998543 3322 2344 589999999999999999999999
Q ss_pred EEECCC--Cce--e------------------------------------eeecCCCCCCCeEEEEEe-cCC---CEEEE
Q 003871 662 VYEAPT--LNH--T------------------------------------SQLVPDKMDLPITYATYS-CDG---KCIYV 697 (790)
Q Consensus 662 iwd~~~--~~~--~------------------------------------~~~~~~~h~~~v~~l~~s-~dg---~~l~s 697 (790)
+||+.+ ++. + ..+. ..|...|++++|. ++| ++|++
T Consensus 269 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s 347 (372)
T 1k8k_C 269 LFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCT 347 (372)
T ss_dssp EEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEE
T ss_pred EEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEE
Confidence 999987 421 0 1121 2578999999976 666 99999
Q ss_pred EEcCCeEEEEECCCCe
Q 003871 698 SCKSGHVKVFDTSTLE 713 (790)
Q Consensus 698 gs~dg~i~vwd~~~~~ 713 (790)
|+.||.|++||+.+++
T Consensus 348 ~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 348 TGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EETTSEEEEEEHHHHH
T ss_pred ecCCCceEEEEecChh
Confidence 9999999999998754
No 77
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-32 Score=302.08 Aligned_cols=283 Identities=17% Similarity=0.197 Sum_probs=230.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEE
Q 003871 443 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 520 (790)
Q Consensus 443 ~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~ 520 (790)
.+.++.|++ ..+++++.|+.|++|++.++.. ... ....|...|.+++|+ +++|+
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~---------------------~~~-~~~~~~~~v~~v~~s~~~~~l~ 150 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSV---------------------SAL-AETDESTYVASVKWSHDGSFLS 150 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTCCE---------------------EEE-EECCTTCCEEEEEECTTSSEEE
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCCcE---------------------eEe-eecCCCCCEEEEEECCCCCEEE
Confidence 355566665 5588999999999999876443 111 112478999999999 88999
Q ss_pred Eec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCC-CCceEEEEcCCCCCEEEEEEeCCC
Q 003871 521 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCLAYSLSL 598 (790)
Q Consensus 521 s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~-~~~~~~~l~~h~~~v~~l~~spdg 598 (790)
+++ ||.|++||+.+++.+..+.+|...|.+++|+++ .+++|+.||.|++||++ .+..+..+.+|.+.|.+++|+|++
T Consensus 151 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 229 (401)
T 4aez_A 151 VGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH-VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG 229 (401)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCC-EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC
Confidence 998 999999999999999999999999999999432 99999999999999998 466788889999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCE-EEEE---eCCcEEEEECCCCceeeee
Q 003871 599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH-LLSI---HEGQIDVYEAPTLNHTSQL 674 (790)
Q Consensus 599 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~-l~~~---~dg~I~iwd~~~~~~~~~~ 674 (790)
++|++|+.|+.|++||+++++. +. ...+|. ..|.+++|+|++.. ++++ .|+.|++||+.+++.+..+
T Consensus 230 ~~l~s~~~d~~v~iwd~~~~~~-----~~-~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~ 300 (401)
T 4aez_A 230 LQLASGGNDNVVQIWDARSSIP-----KF-TKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV 300 (401)
T ss_dssp SEEEEEETTSCEEEEETTCSSE-----EE-EECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE
T ss_pred CEEEEEeCCCeEEEccCCCCCc-----cE-EecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 9999999999999999998542 33 223444 68999999997754 4444 4999999999999998888
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEe
Q 003871 675 VPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 752 (790)
Q Consensus 675 ~~~~h~~~v~~l~~s~dg~~l~sgs--~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s 752 (790)
. +...|.+++|+|+++++++++ .||.|++||+.+++........ +| ...|. +++|+| ++.+|++++
T Consensus 301 ~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-----~h-~~~v~--~~~~s~-dg~~l~s~~ 368 (401)
T 4aez_A 301 D---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-----AH-DTRVL--YSALSP-DGRILSTAA 368 (401)
T ss_dssp E---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE-----CC-SSCCC--EEEECT-TSSEEEEEC
T ss_pred e---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec-----CC-CCCEE--EEEECC-CCCEEEEEe
Confidence 5 467899999999999999854 8999999999998766654322 44 45666 999999 899999999
Q ss_pred CCCcEEEEecCCCcccccc
Q 003871 753 TNGRVHVIEPLESEVEWGK 771 (790)
Q Consensus 753 ~Dg~i~iW~~~~~~~~w~~ 771 (790)
.||.|++|++.+++.....
T Consensus 369 ~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 369 SDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp TTSEEEEEECCC-------
T ss_pred CCCcEEEEECCCCcccccc
Confidence 9999999999998866543
No 78
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=299.28 Aligned_cols=326 Identities=15% Similarity=0.172 Sum_probs=247.8
Q ss_pred ccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCcccccccccccccc
Q 003871 410 AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQL 488 (790)
Q Consensus 410 ~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~sp-dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i 488 (790)
...++.+++|+++. ....... .+|.+.|.+++|+| ++++|++++.||.|++|++.+......
T Consensus 19 ~~~~~~~~v~~~~~----~~~~~~~---~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------- 81 (408)
T 4a11_B 19 RRAESTRRVLGLEL----NKDRDVE---RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY---------- 81 (408)
T ss_dssp HHHHHHHHHHTEEE----CTTEEEC---CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC----------
T ss_pred eeccCcceeecccc----Ccceeee---eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce----------
Confidence 34456788999873 3333322 36999999999999 999999999999999999987544000
Q ss_pred ccCCCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCC---C-eEE
Q 003871 489 YQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ---D-LFA 560 (790)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~---g-~l~ 560 (790)
...............+|...|.+++|+ +.++++++ ||.|++||+.+++....+. +...+.++.++|. + .++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (408)
T 4a11_B 82 YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVA 160 (408)
T ss_dssp EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEE
T ss_pred EeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEE
Confidence 000000000001112589999999998 56888888 9999999999999888876 6778999999884 4 899
Q ss_pred EEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeceee-----------ee
Q 003871 561 FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFL-----------HS 628 (790)
Q Consensus 561 sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~l-----------~~ 628 (790)
+|+.||.|++||+.+++.+..+.+|...|.+++|+|+++ .+++|+.||.|++||++++.... ..+ ..
T Consensus 161 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~ 239 (408)
T 4a11_B 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL-ITLDQHNGKKSQAVES 239 (408)
T ss_dssp EEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCS-EECCTTTTCSCCCTTT
T ss_pred EEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccc-ccccccccccceeecc
Confidence 999999999999999999999999999999999999998 58999999999999998754111 000 00
Q ss_pred eccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCC---CCCeEEEEEecCCCEEEEEEcCCeE
Q 003871 629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKM---DLPITYATYSCDGKCIYVSCKSGHV 704 (790)
Q Consensus 629 ~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h---~~~v~~l~~s~dg~~l~sgs~dg~i 704 (790)
...+|. ..|.+++|+|++++|+++ .|+.|++||+.+++....+..... ...+........+..+++++.|+.|
T Consensus 240 ~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 316 (408)
T 4a11_B 240 ANTAHN---GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTI 316 (408)
T ss_dssp SSCSCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred cccccc---CceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEE
Confidence 112344 789999999999999985 899999999998877655433211 1222222223445667777889999
Q ss_pred EEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccc
Q 003871 705 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 705 ~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
++||+.+++.+..+. +| ...|. +++|+| ++++|++++.||.|++|++.++++.
T Consensus 317 ~v~d~~~~~~~~~~~-------~~-~~~v~--~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 317 AVYTVYSGEQITMLK-------GH-YKTVD--CCVFQS-NFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp EEEETTTCCEEEEEC-------CC-SSCEE--EEEEET-TTTEEEEEETTSCEEEEEECC----
T ss_pred EEEECcCCcceeeec-------cC-CCeEE--EEEEcC-CCCEEEEECCCCeEEEEeCCCCCcc
Confidence 999999999998876 44 44666 999999 8999999999999999999998755
No 79
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=325.77 Aligned_cols=317 Identities=11% Similarity=0.010 Sum_probs=228.0
Q ss_pred CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeee
Q 003871 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLK 420 (790)
Q Consensus 341 ~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd 420 (790)
+.|++|+ |||..+++... ....++.+|.+.| ++++|+ |+...++++.+| |+++.||+|++||
T Consensus 180 s~D~tI~--iWd~~~~~~~~----~~~~~l~~~~~~V-------~~v~ws-p~~~~~~~~~~L----As~s~DgtvrlWd 241 (524)
T 2j04_B 180 KHSSCIQ--IFKMNTSTLHC----VKVQTIVHSFGEV-------WDLKWH-EGCHAPHLVGCL----SFVSQEGTINFLE 241 (524)
T ss_dssp --CEEEE--EEEEETTTCCE----EEEEEEEECCCSE-------EEEEEC-SSCCCSSSSCEE----EEEETTSCEEEEE
T ss_pred CCCceEE--EEEccCCCCCc----eEEEEEEecCCcE-------EEEEEC-CCCCCCCCCceE----EEEecCCeEEEEE
Confidence 4678999 99988776421 0002356778888 999998 211111236788 9999999999999
Q ss_pred ccccCCCCc-e-----eeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCc
Q 003871 421 LQLINEPSE-C-----RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK 494 (790)
Q Consensus 421 ~~~~~~~~~-~-----~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~ 494 (790)
+........ . ....+ .+|...|++++|+|++ .|++|+.||+|++||+.++..
T Consensus 242 ~~~~~~~~~~~~~~~~p~~~l--~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~------------------- 299 (524)
T 2j04_B 242 IIDNATDVHVFKMCEKPSLTL--SLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEV------------------- 299 (524)
T ss_dssp CCCCSSSSSEEECCCSCSEEE--CCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSS-------------------
T ss_pred cCCCccccccceeecCceEEE--EcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCC-------------------
Confidence 974211100 0 00112 3689999999999875 799999999999999875322
Q ss_pred eeeeecccCCCCCCeEEE--Eec--C-cEEEEec-CCeEEEEECCCCcEEEEEcCCCC--CeEEEEEcCCC-eEEEEeCC
Q 003871 495 LVMTNDIAADPKDSISCF--ALR--G-SHLFSAS-GGKISIFSLETFQTLATFANPPP--IATYFILLPQD-LFAFGFDD 565 (790)
Q Consensus 495 ~~~~~~~~~~~~~~V~~l--~~s--~-~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~--~v~~l~~s~~g-~l~sgs~d 565 (790)
... ...+|...|.++ +|+ + .+|++++ |++|++||++++++...+.+|.. .|.+++|+|++ .+++++.|
T Consensus 300 -~~~--~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d 376 (524)
T 2j04_B 300 -PSF--YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA 376 (524)
T ss_dssp -CSE--EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSS
T ss_pred -ceE--EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCC
Confidence 101 012699999999 456 5 7899999 99999999998887777766643 57899999999 99999999
Q ss_pred CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeecc---CCCCCCCCeEE
Q 003871 566 SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT---GLVPETTIVNH 642 (790)
Q Consensus 566 g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~---~~~~~~~~v~~ 642 (790)
++|++||++++.++..+.+|.+.|++++|+|+|++|++|+.|++|++||+..+. +..... .+. ...+.+
T Consensus 377 ~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~------~~~~~~~~~~~~--~~~v~~ 448 (524)
T 2j04_B 377 SSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL------LHGIKNSSATQK--SLRLWK 448 (524)
T ss_dssp SEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST------TTCC------CC--CCEEEE
T ss_pred CcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh------ccccccCcccee--eeEEEE
Confidence 999999999999888899999999999999999999999999999999987621 111100 011 025789
Q ss_pred EEEeCCCCEEEEEeCCcEEEEECC-CCceeeeecCCCCCCCeEEEEEecCCC---EEEEEEcCCeEEEEECCCC
Q 003871 643 IQFHPDQIHLLSIHEGQIDVYEAP-TLNHTSQLVPDKMDLPITYATYSCDGK---CIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 643 i~~sp~~~~l~~~~dg~I~iwd~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~---~l~sgs~dg~i~vwd~~~~ 712 (790)
++|+|++..+.... ...+|+.. ++.++..+.+ |...|.+++|+|++. ++++|+.||.|+||++...
T Consensus 449 v~~sp~g~~~~~~~--~~~~~~~~~~g~~~~~l~g--h~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 449 WDYSIKDDKYRIDS--SYEVYPLTVNDVSKAKIDA--HGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CBCCSSSCEEEECC--CCCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred eccCCCCCeEEccC--CceecccccCCcceeeecC--CCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 99999998553322 23344332 4566666654 689999999999964 9999999999999998753
No 80
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.8e-32 Score=285.88 Aligned_cols=255 Identities=10% Similarity=0.070 Sum_probs=202.3
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCc
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGS 517 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 517 (790)
.+|.+.|.+++|+|+|++|++|+.|++|++|++.+.
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~-------------------------------------------- 41 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE-------------------------------------------- 41 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS--------------------------------------------
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC--------------------------------------------
Confidence 368888888888888888888888888888876431
Q ss_pred EEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCc--eEEEEcCCCCCEEEE
Q 003871 518 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCL 592 (790)
Q Consensus 518 ~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~--g-~l~sgs~dg~I~iwd~~~~~--~~~~l~~h~~~v~~l 592 (790)
+++.+.++.+|...|.+++|+|+ + +|++|+.|++|++||+.+++ .+..+.+|...|.++
T Consensus 42 ----------------~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v 105 (297)
T 2pm7_B 42 ----------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSV 105 (297)
T ss_dssp ----------------CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEE
T ss_pred ----------------CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEE
Confidence 12345677889999999999864 7 99999999999999998874 566788899999999
Q ss_pred EEeCC--CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC-------------CCEEEEE-e
Q 003871 593 AYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-------------QIHLLSI-H 656 (790)
Q Consensus 593 ~~spd--g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~-------------~~~l~~~-~ 656 (790)
+|+|+ +++|++|+.|++|++||++++.... .. ...+|. ..|.+++|+|+ +++|+++ .
T Consensus 106 ~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~---~~-~~~~h~---~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~ 178 (297)
T 2pm7_B 106 QWAPHEYGPMLLVASSDGKVSVVEFKENGTTS---PI-IIDAHA---IGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178 (297)
T ss_dssp EECCGGGCSEEEEEETTSEEEEEEBCSSSCBC---CE-EEECCS---SCEEEEEECCCC------------CCEEEEEET
T ss_pred EeCcCCCCcEEEEEECCCcEEEEEecCCCcee---ee-eeeccc---CccceEeecCCcccccccCCCCCCcceEEEEcC
Confidence 99997 8999999999999999998753211 11 234566 68999999997 4688885 8
Q ss_pred CCcEEEEECCCCc----eeeeecCCCCCCCeEEEEEecCC---CEEEEEEcCCeEEEEECCCCe--EE-EEeccccccCC
Q 003871 657 EGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDG---KCIYVSCKSGHVKVFDTSTLE--LR-CQINLTAYAQP 726 (790)
Q Consensus 657 dg~I~iwd~~~~~----~~~~~~~~~h~~~v~~l~~s~dg---~~l~sgs~dg~i~vwd~~~~~--~~-~~~~~~~~~~~ 726 (790)
|+.|++||+++++ ....+. .|...|.+++|+|++ ++|++|+.|++|++||+.++. .. ..+. ..
T Consensus 179 D~~v~lwd~~~~~~~~~~~~~l~--~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~-----~~ 251 (297)
T 2pm7_B 179 DNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLK-----EE 251 (297)
T ss_dssp TSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS-----SS
T ss_pred CCcEEEEEEcCCCceEEEEEEec--CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeee-----cc
Confidence 9999999998766 445554 478999999999985 899999999999999998753 11 2221 11
Q ss_pred CCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCcccccc
Q 003871 727 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 771 (790)
Q Consensus 727 gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~ 771 (790)
+| ...|+ +++|+| ++++||+++.||+|+||+.... ..|..
T Consensus 252 ~~-~~~v~--~~~~s~-~g~~las~~~D~~v~lw~~~~~-g~w~~ 291 (297)
T 2pm7_B 252 KF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLE-GKWEP 291 (297)
T ss_dssp CC-SSCEE--EEEECS-SSCCEEEEETTSCEEEEEECTT-SCEEE
T ss_pred cC-CCcEE--EEEECC-CCCEEEEEcCCCcEEEEEECCC-CcEEe
Confidence 33 44566 999999 8999999999999999998642 34543
No 81
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.1e-33 Score=302.39 Aligned_cols=296 Identities=13% Similarity=0.161 Sum_probs=242.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCC---CceeeeeccCCCCCCce
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEP---SECRTLLLPDNSFGGRV 444 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~---~~~~~~~l~~~~h~~~V 444 (790)
..+.+|.+.| ++++|+ | +++ ++|+.||.|++|++...... .....+. +|...|
T Consensus 10 ~~~~~h~~~i-------~~~~~~-------~--~~l----~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~----~h~~~v 65 (397)
T 1sq9_A 10 NAGKAHDADI-------FSVSAC-------N--SFT----VSCSGDGYLKVWDNKLLDNENPKDKSYSHF----VHKSGL 65 (397)
T ss_dssp EESSCSSSCE-------EEEEEC-------S--SEE----EEEETTSEEEEEESBCCTTCCGGGGEEEEE----CCTTCE
T ss_pred hhhhhhhcCe-------EEEEec-------C--CeE----EEEcCCCEEEEEECCCcccccCCCcceEEe----cCCCcE
Confidence 6788999999 999998 6 778 99999999999999742100 0233333 699999
Q ss_pred EEEEEcCC----C---CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCC-----CCCeEEE
Q 003871 445 VRLIYSHS----G---DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-----KDSISCF 512 (790)
Q Consensus 445 ~~l~~spd----g---~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~V~~l 512 (790)
.+++|+|+ | ++|++++.|+.|++|++.++.. ........ ...| ...|.++
T Consensus 66 ~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~----------------~~~~~~~~--~~~~~~~~~~~~v~~~ 127 (397)
T 1sq9_A 66 HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE----------------TKKVIFEK--LDLLDSDMKKHSFWAL 127 (397)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT----------------TCCEEEEE--ECCSCTTGGGSCEEEE
T ss_pred EEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcc----------------ccccccee--ecccccccCCCcEEEE
Confidence 99999999 9 9999999999999999876432 00000111 1145 5899999
Q ss_pred Eec------CcE-EEEec-CCeEEEEECCC------CcEEE-----EE-------cCCCCCeEEEEEcCCCeEEEEeCCC
Q 003871 513 ALR------GSH-LFSAS-GGKISIFSLET------FQTLA-----TF-------ANPPPIATYFILLPQDLFAFGFDDS 566 (790)
Q Consensus 513 ~~s------~~~-l~s~s-dg~I~vwd~~~------~~~~~-----~~-------~~~~~~v~~l~~s~~g~l~sgs~dg 566 (790)
+|+ +++ +++++ ||.|++||+.+ ++.+. .+ ..|...|.+++|+|++.+++|+.||
T Consensus 128 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg 207 (397)
T 1sq9_A 128 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNG 207 (397)
T ss_dssp EEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTS
T ss_pred EEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCC
Confidence 997 778 88888 99999999998 66665 66 4478899999999988888999999
Q ss_pred cEEEEeCCCCceEEEEcC---C---CCCEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCceeeceeeeeeccC-----
Q 003871 567 SILVHCPCTKKTKAKLKG---H---QNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTG----- 632 (790)
Q Consensus 567 ~I~iwd~~~~~~~~~l~~---h---~~~v~~l~~spdg~~l~s~s~d---g~I~vwd~~~~~~~~~~~l~~~~~~----- 632 (790)
.|++||+++++.+..+.. | ...|.+++|+|++++|++++.| +.|++||+++++. +..+...
T Consensus 208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-----~~~~~~~~~~~~ 282 (397)
T 1sq9_A 208 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-----IGSLSVPTHSSQ 282 (397)
T ss_dssp EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-----EEEECBC-----
T ss_pred cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc-----cceeccCccccc
Confidence 999999999999999998 9 9999999999999999999999 9999999998543 2222220
Q ss_pred -------CCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCC----CC---------------CCCeEE
Q 003871 633 -------LVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPD----KM---------------DLPITY 685 (790)
Q Consensus 633 -------~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~----~h---------------~~~v~~ 685 (790)
|. ..|.+++|+|++++|+++ .|+.|++||+.+++.+..+... .| ...|.+
T Consensus 283 ~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~ 359 (397)
T 1sq9_A 283 ASLGEFAHS---SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 359 (397)
T ss_dssp ---CCBSBS---SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEE
T ss_pred ccccccccC---CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeE
Confidence 44 689999999999999995 8999999999999999888711 24 889999
Q ss_pred EEEecCC----------CEEEEEEcCCeEEEEECCCCe
Q 003871 686 ATYSCDG----------KCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 686 l~~s~dg----------~~l~sgs~dg~i~vwd~~~~~ 713 (790)
++|+|+| ++|++|+.||.|++|++.+|+
T Consensus 360 ~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 360 VKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 9999998 799999999999999998864
No 82
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=299.80 Aligned_cols=295 Identities=12% Similarity=0.113 Sum_probs=233.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccC---CCceEeeeccccCCCCceeeeeccCCCCCCce
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKS---LEKSVNLKLQLINEPSECRTLLLPDNSFGGRV 444 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~---d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V 444 (790)
..+.+|.+.| ++++|+ |++..+ +++|+. |+.|++||+.. +....... .+|...|
T Consensus 12 ~~~~~h~~~v-------~~~~~~-------p~~~~l---~~~~s~~~~d~~v~iw~~~~----~~~~~~~~--~~~~~~v 68 (357)
T 3i2n_A 12 HIQKGFNYTV-------FDCKWV-------PCSAKF---VTMGNFARGTGVIQLYEIQH----GDLKLLRE--IEKAKPI 68 (357)
T ss_dssp EEEEECSSCE-------EEEEEC-------TTSSEE---EEEEC--CCCEEEEEEEECS----SSEEEEEE--EEESSCE
T ss_pred hhccCCCCce-------EEEEEc-------CCCceE---EEecCccCCCcEEEEEeCCC----Ccccceee--ecccCcE
Confidence 4456899999 999999 989765 267766 99999999973 44332221 2589999
Q ss_pred EEEEEcCC---CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEe------c
Q 003871 445 VRLIYSHS---GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL------R 515 (790)
Q Consensus 445 ~~l~~spd---g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~------s 515 (790)
.+++|+|+ |+++++++.||.|++||+.++.. .... ..+|...|.+++| +
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------------~~~~--~~~~~~~v~~~~~~~~~~~s 126 (357)
T 3i2n_A 69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM--------------------PVYS--VKGHKEIINAIDGIGGLGIG 126 (357)
T ss_dssp EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS--------------------CSEE--ECCCSSCEEEEEEESGGGCC
T ss_pred EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc--------------------cEEE--EEecccceEEEeeccccccC
Confidence 99999999 69999999999999999886441 1111 1268999999965 4
Q ss_pred --CcEEEEec-CCeEEEEECCCCc-EEEEEcCCCC----CeEEEE----EcCCC-eEEEEeCCCcEEEEeCCCCceEEEE
Q 003871 516 --GSHLFSAS-GGKISIFSLETFQ-TLATFANPPP----IATYFI----LLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 582 (790)
Q Consensus 516 --~~~l~s~s-dg~I~vwd~~~~~-~~~~~~~~~~----~v~~l~----~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l 582 (790)
+++|++++ ||.|++||+.+++ .+..+..+.. .+.+++ |+|++ .+++|+.||.|++||+++++....
T Consensus 127 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~- 205 (357)
T 3i2n_A 127 EGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE- 205 (357)
T ss_dssp -CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-
T ss_pred CCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-
Confidence 77899998 9999999999886 6777765544 788888 67899 999999999999999999887544
Q ss_pred cCCCCCEEEEEEeC---CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCC-EEEEE-eC
Q 003871 583 KGHQNRITCLAYSL---SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI-HE 657 (790)
Q Consensus 583 ~~h~~~v~~l~~sp---dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~-~d 657 (790)
..|...|.+++|+| +++++++|+.|+.|++||+++++........ ...+|. ..|++++|+|+++ +++++ .|
T Consensus 206 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~~l~~~~~d 281 (357)
T 3i2n_A 206 TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASV-SEKAHK---STVWQVRHLPQNRELFLTAGGA 281 (357)
T ss_dssp EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEE-EEECCS---SCEEEEEEETTEEEEEEEEETT
T ss_pred cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeee-ccCCCc---CCEEEEEECCCCCcEEEEEeCC
Confidence 55889999999999 9999999999999999999875433222222 122455 6999999999998 67774 89
Q ss_pred CcEEEEECCCCc-------------------eeeeecCCCCCCCeEEEEEecCCCEEE-EEEcCCeEEEEECCCCeE
Q 003871 658 GQIDVYEAPTLN-------------------HTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSGHVKVFDTSTLEL 714 (790)
Q Consensus 658 g~I~iwd~~~~~-------------------~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~dg~i~vwd~~~~~~ 714 (790)
|.|++||++++. .+..+. .|...|++++|+|++++|+ +++.||.|++||+.+.+.
T Consensus 282 g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT--LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CcEEEeecCCCcccccccCCCCccccccccceeeccc--cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 999999997543 344454 3688999999999999998 899999999999987654
No 83
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.7e-33 Score=300.92 Aligned_cols=292 Identities=13% Similarity=0.098 Sum_probs=233.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CC-CCcccceeccCCCceEeeeccccCCCCceeeee-ccCCCCCCce
Q 003871 370 QEGRPLDASSGDDSNDSSCFNDNNQSREST---SL-PDADSAVCAKSLEKSVNLKLQLINEPSECRTLL-LPDNSFGGRV 444 (790)
Q Consensus 370 l~~h~~~v~~~~~~i~~~~fs~~~~~~s~d---g~-~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~-l~~~~h~~~V 444 (790)
..+|.+.| ++++|+ |+ +. .+ ++++.++.|++||+... .....+. .....|...|
T Consensus 14 ~~~h~~~v-------~~i~~~-------p~~~~~~~~~----~~~~~~~~v~vw~~~~~---~~~~~~~~~~~~~~~~~v 72 (366)
T 3k26_A 14 KEDHNQPL-------FGVQFN-------WHSKEGDPLV----FATVGSNRVTLYECHSQ---GEIRLLQSYVDADADENF 72 (366)
T ss_dssp ECTTCSCE-------EEEEEC-------TTCCTTSCEE----EEEEETTEEEEEEECGG---GCEEEEEEEECSCTTCCE
T ss_pred ecCCCCce-------EEEEEe-------cccCCCCceE----EEECCCCEEEEEEcCCC---cEEEeeeeccccCCCCcE
Confidence 45899999 999998 64 43 34 66666779999999742 2222222 1112377899
Q ss_pred EEEEEcCC----CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---Cc
Q 003871 445 VRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS 517 (790)
Q Consensus 445 ~~l~~spd----g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~ 517 (790)
.+++|+|+ |++|++++.||.|++||+.++.. .... .+|...|.+++|+ ++
T Consensus 73 ~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~---------------------~~~~--~~~~~~i~~~~~~~~~~~ 129 (366)
T 3k26_A 73 YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC---------------------IKHY--VGHGNAINELKFHPRDPN 129 (366)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE---------------------EEEE--ESCCSCEEEEEECSSCTT
T ss_pred EEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE---------------------eeee--cCCCCcEEEEEECCCCCC
Confidence 99999999 67999999999999999876432 2211 2689999999998 68
Q ss_pred EEEEec-CCeEEEEECCCCcEEEEE---cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEE----------
Q 003871 518 HLFSAS-GGKISIFSLETFQTLATF---ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---------- 582 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~~~~~~~~~---~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l---------- 582 (790)
++++++ ||.|++||+.+++.+..+ .+|...|.+++|+|++ .+++|+.||.|++||+++++....+
T Consensus 130 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 209 (366)
T 3k26_A 130 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 209 (366)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGG
T ss_pred EEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCC
Confidence 899998 999999999999999988 6899999999999999 9999999999999999987554333
Q ss_pred ------------------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee---------ceeeeeeccCCCC
Q 003871 583 ------------------KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC---------SKFLHSFQTGLVP 635 (790)
Q Consensus 583 ------------------~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~---------~~~l~~~~~~~~~ 635 (790)
.+|...|.+++|+ ++++++++.|+.|++||+.++.... ...+. ....|.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 285 (366)
T 3k26_A 210 TNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG-RFDYSQ- 285 (366)
T ss_dssp CSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE-EEECSS-
T ss_pred CcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec-cccccC-
Confidence 3399999999999 7799999999999999998754310 01233 233444
Q ss_pred CCCCeEEEEEeCC--CCEEEEE-eCCcEEEEECCCCcee----eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 636 ETTIVNHIQFHPD--QIHLLSI-HEGQIDVYEAPTLNHT----SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 636 ~~~~v~~i~~sp~--~~~l~~~-~dg~I~iwd~~~~~~~----~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
..|++++|+|+ +++|+++ .||.|++||+.+++.. ..+..+.|...|++++|+|++++|++|+.||.|++||
T Consensus 286 --~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 286 --CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp --CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred --CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 68999999999 9999996 8999999999987643 3565544479999999999999999999999999999
Q ss_pred CCC
Q 003871 709 TST 711 (790)
Q Consensus 709 ~~~ 711 (790)
+.+
T Consensus 364 ~~~ 366 (366)
T 3k26_A 364 RLR 366 (366)
T ss_dssp C--
T ss_pred ecC
Confidence 863
No 84
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.5e-31 Score=295.08 Aligned_cols=283 Identities=14% Similarity=0.161 Sum_probs=234.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEE
Q 003871 443 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 520 (790)
Q Consensus 443 ~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~ 520 (790)
....|+||+++ .|++| .|++|+|||..++.. .......+|...|++++|+ |++|+
T Consensus 107 y~~~l~wS~~n-~lAvg-ld~tV~lWd~~tg~~---------------------~~~~~~~~~~~~V~sv~fspdg~~la 163 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDI---------------------LQLLQMEQPGEYISSVAWIKEGNYLA 163 (420)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCE---------------------EEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred cceeEEECCCC-EEEEE-eCCEEEEEECCCCCE---------------------EEEEEecCCCCcEEEEEECCCCCEEE
Confidence 45678999864 55554 599999999876433 2222233688899999999 89999
Q ss_pred Eec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCC-ceEEEEcCCCCCEEEEEEeCCC
Q 003871 521 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSL 598 (790)
Q Consensus 521 s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~v~~l~~spdg 598 (790)
+|+ ||.|++||+.+++.+..+.+|...+.++++++. .+++|+.|+.+++||.... ..+..+.+|...+..+.++|++
T Consensus 164 sgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g 242 (420)
T 4gga_A 164 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 242 (420)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCC-EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC
Confidence 999 999999999999999999999999988877432 9999999999999998865 4567789999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCC-EEEEE---eCCcEEEEECCCCceeeee
Q 003871 599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI---HEGQIDVYEAPTLNHTSQL 674 (790)
Q Consensus 599 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~---~dg~I~iwd~~~~~~~~~~ 674 (790)
+++++++.|+.+++||..+++... ..+. ....|. ..|.+++|+|++. .++++ .|+.|++||+.++++...+
T Consensus 243 ~~l~s~~~D~~v~i~~~~~~~~~~-~~~~-~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~ 317 (420)
T 4gga_A 243 RHLASGGNDNLVNVWPSAPGEGGW-VPLQ-TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 317 (420)
T ss_dssp SEEEEEETTSCEEEEESSCCSSCS-CCSE-EECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE
T ss_pred CeeeeeeccccceEEeeccccccc-eeee-eecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee
Confidence 999999999999999998865322 1222 233444 6899999999765 44442 6899999999999998888
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEe
Q 003871 675 VPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 752 (790)
Q Consensus 675 ~~~~h~~~v~~l~~s~dg~~l~sgs--~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s 752 (790)
.. ...+.++.|+|+++.+++++ .|+.|+|||+.+++.+..+. || .+.|. +++|+| ||.+|||||
T Consensus 318 ~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-------gH-~~~V~--~l~~sp-dg~~l~S~s 383 (420)
T 4gga_A 318 DA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GH-TSRVL--SLTMSP-DGATVASAA 383 (420)
T ss_dssp EC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CC-SSCEE--EEEECT-TSSCEEEEE
T ss_pred cc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-------CC-CCCEE--EEEEcC-CCCEEEEEe
Confidence 64 57899999999999998765 68999999999999999886 66 44666 999999 899999999
Q ss_pred CCCcEEEEecCCCccc
Q 003871 753 TNGRVHVIEPLESEVE 768 (790)
Q Consensus 753 ~Dg~i~iW~~~~~~~~ 768 (790)
.||+|+||++.+..+.
T Consensus 384 ~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 384 ADETLRLWRCFELDPA 399 (420)
T ss_dssp TTTEEEEECCSCSSCC
T ss_pred cCCeEEEEECCCCCcc
Confidence 9999999999776543
No 85
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.7e-31 Score=294.74 Aligned_cols=280 Identities=18% Similarity=0.223 Sum_probs=230.6
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
+.++|| ++ +.| |+|. |++|+|||.. ++.+..+ +..++|...|++++|+|+|++|++|+.||+
T Consensus 109 ~~l~wS-------~~-n~l----Avgl-d~tV~lWd~~----tg~~~~~-~~~~~~~~~V~sv~fspdg~~lasgs~Dg~ 170 (420)
T 4gga_A 109 NLVDWS-------SG-NVL----AVAL-DNSVYLWSAS----SGDILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAE 170 (420)
T ss_dssp BCEEEC-------TT-SEE----EEEE-TTEEEEEETT----TCCEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred eeEEEC-------CC-CEE----EEEe-CCEEEEEECC----CCCEEEE-EEecCCCCcEEEEEECCCCCEEEEEECCCe
Confidence 778998 64 455 6664 8999999997 4555432 122468899999999999999999999999
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEECCC-CcEEEEEc
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLET-FQTLATFA 542 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd~~~-~~~~~~~~ 542 (790)
|++||+.++.. +.. ..+|...+.++++++.++++|+ |+.+++||... ...+..+.
T Consensus 171 v~iWd~~~~~~---------------------~~~--~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~ 227 (420)
T 4gga_A 171 VQLWDVQQQKR---------------------LRN--MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 227 (420)
T ss_dssp EEEEETTTTEE---------------------EEE--ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred EEEEEcCCCcE---------------------EEE--EeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEec
Confidence 99999876433 221 1379999999999999999999 99999999876 45667888
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc----eEEEEcCCCCCEEEEEEeCCC-CEEEE--EeCCCcEEEEE
Q 003871 543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLSL-NVLVS--SGADAQLCVWD 614 (790)
Q Consensus 543 ~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~----~~~~l~~h~~~v~~l~~spdg-~~l~s--~s~dg~I~vwd 614 (790)
+|...+..+.++|++ .+++++.|+.+++|+..+++ .+.....|...|.+++|+|++ ..+++ |+.|++|++||
T Consensus 228 ~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd 307 (420)
T 4gga_A 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 307 (420)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEE
T ss_pred ccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEe
Confidence 999999999999999 99999999999999998764 356677899999999999965 55555 45799999999
Q ss_pred CCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE---eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecC
Q 003871 615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 691 (790)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~---~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d 691 (790)
+.+++.. ..+. .+ ..+.++.|+|+++.++++ .|+.|++||+.+++++.++.+ |...|++++|+||
T Consensus 308 ~~t~~~~-----~~~~-~~----~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g--H~~~V~~l~~spd 375 (420)
T 4gga_A 308 VCSGACL-----SAVD-AH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPD 375 (420)
T ss_dssp TTTTEEE-----EEEE-CS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTT
T ss_pred CCccccc-----eeec-cc----cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCC
Confidence 9996533 2122 23 479999999999998873 589999999999999999965 7899999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEE
Q 003871 692 GKCIYVSCKSGHVKVFDTSTLELRCQ 717 (790)
Q Consensus 692 g~~l~sgs~dg~i~vwd~~~~~~~~~ 717 (790)
|++|++|+.|++|++||+........
T Consensus 376 g~~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 376 GATVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp SSCEEEEETTTEEEEECCSCSSCC--
T ss_pred CCEEEEEecCCeEEEEECCCCCccch
Confidence 99999999999999999987654433
No 86
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.6e-31 Score=278.83 Aligned_cols=280 Identities=15% Similarity=0.184 Sum_probs=229.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEE
Q 003871 444 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 521 (790)
Q Consensus 444 V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s 521 (790)
...|+||+++ .|++ +.|++|+|||+.++.. .......+|...|++++|+ ++++++
T Consensus 28 ~~~l~WS~~~-~lAv-g~D~tV~iWd~~tg~~---------------------~~~~~~~~~~~~V~~v~~~~~~~~l~s 84 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAV-ALDNSVYLWSASSGDI---------------------LQLLQMEQPGEYISSVAWIKEGNYLAV 84 (318)
T ss_dssp CBCEEECTTS-EEEE-EETTEEEEEETTTCCE---------------------EEEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred ceEEEECCCC-EEEE-EeCCEEEEEECCCCCE---------------------EEEEEecCCCCeEEEEEECCCCCEEEE
Confidence 4678999986 5555 5699999999876433 2222234688899999999 899999
Q ss_pred ec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEEEcCCCCCEEEEEEeCCC
Q 003871 522 AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSL 598 (790)
Q Consensus 522 ~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~v~~l~~spdg 598 (790)
|+ ||+|++||+.+++++..+.+|...+.++.+ ++ .+++|+.++.+++|+..++ ..+..+.+|...+..+.+++++
T Consensus 85 gs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (318)
T 4ggc_A 85 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 162 (318)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence 99 999999999999999999999988876554 56 9999999999999998876 4567788999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE---E-eCCcEEEEECCCCceeeee
Q 003871 599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS---I-HEGQIDVYEAPTLNHTSQL 674 (790)
Q Consensus 599 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~---~-~dg~I~iwd~~~~~~~~~~ 674 (790)
+++++++.|++|++||+++++..... .. ....+. +.|.+++++|++..++. + .++.|++||..........
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~-~~-~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVP-LQ-TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCC-SE-EECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred CEEEEEecCcceeEEECCCCcccccc-ee-eecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Confidence 99999999999999999986533221 11 222333 68999999998765442 2 6788999999988877665
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEe
Q 003871 675 VPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 752 (790)
Q Consensus 675 ~~~~h~~~v~~l~~s~dg~~l~sgs--~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s 752 (790)
. +...+..+.|+|+++.+++++ .|+.|++||+.+++++..+. || .+.|+ +++|+| ++++|||||
T Consensus 238 ~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH-~~~V~--~l~~sp-dg~~l~S~s 303 (318)
T 4ggc_A 238 D---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GH-TSRVL--SLTMSP-DGATVASAA 303 (318)
T ss_dssp E---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CC-SSCEE--EEEECT-TSSCEEEEE
T ss_pred c---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CC-CCCEE--EEEEcC-CCCEEEEEe
Confidence 4 477899999999999888765 79999999999999999886 66 45677 999999 899999999
Q ss_pred CCCcEEEEecCCCcc
Q 003871 753 TNGRVHVIEPLESEV 767 (790)
Q Consensus 753 ~Dg~i~iW~~~~~~~ 767 (790)
.||+|+|||+.+.+|
T Consensus 304 ~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 304 ADETLRLWRCFELDP 318 (318)
T ss_dssp TTTEEEEECCSCCCC
T ss_pred cCCeEEEEECCCCCC
Confidence 999999999987653
No 87
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=7e-32 Score=288.45 Aligned_cols=280 Identities=13% Similarity=0.101 Sum_probs=231.5
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.+|.+.|.+++|+|++++|++++.|+.|++|++.++.. ...... . .+|...|.+++|+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-----------------~~~~~~-~--~~~~~~v~~~~~~~~ 67 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-----------------NVDLLQ-S--LRYKHPLLCCNFIDN 67 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-----------------EEEEEE-E--EECSSCEEEEEEEES
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-----------------ccccee-e--eecCCceEEEEECCC
Confidence 37999999999999999999999999999999876431 000111 1 1589999999999
Q ss_pred Cc-EEEEec-CCeEEEEEC-CCCcEEEEEcC--CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC---------CceEE
Q 003871 516 GS-HLFSAS-GGKISIFSL-ETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCT---------KKTKA 580 (790)
Q Consensus 516 ~~-~l~s~s-dg~I~vwd~-~~~~~~~~~~~--~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~---------~~~~~ 580 (790)
++ ++++++ ||.|++||+ .+++. ..+.+ |...|.+++|+| + .+++|+.|+.|++||+++ ++++.
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred CCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 88 899988 999999999 87755 67778 999999999999 8 999999999999999987 76666
Q ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeeceeeeeeccCCCCCCCCeEEEEEeC-CCCEEEEE-eC
Q 003871 581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI-HE 657 (790)
Q Consensus 581 ~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~-~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~-~d 657 (790)
.+. |...|.+++|+|++ +++++.|+.|++||+++ +... .......+. ..+.+++|+| ++.+++++ .|
T Consensus 146 ~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~d 215 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN----GTIEESGLK---YQIRDVALLPKEQEGYACSSID 215 (342)
T ss_dssp SSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC----CEEEECSCS---SCEEEEEECSGGGCEEEEEETT
T ss_pred EEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc----ceeeecCCC---CceeEEEECCCCCCEEEEEecC
Confidence 666 88999999999987 99999999999999987 5421 111223344 6899999999 99999985 89
Q ss_pred CcEEEEECCCC------ceeeeecCCC-------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecccccc
Q 003871 658 GQIDVYEAPTL------NHTSQLVPDK-------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA 724 (790)
Q Consensus 658 g~I~iwd~~~~------~~~~~~~~~~-------h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~ 724 (790)
|.|++||+... +....+..+. |...|.+++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----- 290 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA----- 290 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-----
T ss_pred CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh-----
Confidence 99999999876 6666776531 23499999999999999999999999999999999888865
Q ss_pred CCCCcccccceEEEEEecCCCCEEEEEeCCCc-EEEEe
Q 003871 725 QPGTISLELYPLVIAAHPLEPNRIALGLTNGR-VHVIE 761 (790)
Q Consensus 725 ~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~-i~iW~ 761 (790)
+||...|. +++ | ++.+|++|+.||. .+.|.
T Consensus 291 --~~h~~~v~--~~~--~-~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 291 --KFNEDSVV--KIA--C-SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp --CCSSSEEE--EEE--E-CSSEEEEEEECTHHHHCSS
T ss_pred --cccCCCce--Eec--C-CCCeEEEEecCCccccccc
Confidence 55456677 777 8 8999999999998 55554
No 88
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.9e-32 Score=299.13 Aligned_cols=300 Identities=10% Similarity=0.083 Sum_probs=222.6
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCce--eeeecccCCCC-----------
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPK----------- 506 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~--~~~~~~~~~~~----------- 506 (790)
|.+.|.+++|+|+|++|++|+.||.|++|++.++..... ...+. +... ..+|.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~------------~~~~~~~~~~~--~~~h~~~~~~~~~~~~ 92 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS------------HSRGEYNVYST--FQSHEPEFDYLKSLEI 92 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C------------CCCCCEEEEEE--EECCCCEEEGGGTEEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc------------ccccceeEecc--cccccccccccccccc
Confidence 678999999999999999999999999999886542000 00011 1111 12576
Q ss_pred -CCeEEEEec--C--cEEEEec-CCeEEEEECCCCcEE---------------------------------------EE-
Q 003871 507 -DSISCFALR--G--SHLFSAS-GGKISIFSLETFQTL---------------------------------------AT- 540 (790)
Q Consensus 507 -~~V~~l~~s--~--~~l~s~s-dg~I~vwd~~~~~~~---------------------------------------~~- 540 (790)
..|.+++|+ + .++++++ |+.|++||+.++... ..
T Consensus 93 ~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 93 EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 889999999 4 6888888 999999999764432 12
Q ss_pred EcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-CceEE-------EEcCCCCCEEEEEEeCCC-CEEEEEeCCCcE
Q 003871 541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKA-------KLKGHQNRITCLAYSLSL-NVLVSSGADAQL 610 (790)
Q Consensus 541 ~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~-~~~~~-------~l~~h~~~v~~l~~spdg-~~l~s~s~dg~I 610 (790)
..+|...|.+++|+|++ .+++| .|+.|++||+.+ ++.+. .+.+|...|++++|+|++ ++|++|+.|+.|
T Consensus 173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 35799999999999999 99998 799999999984 44444 256799999999999998 999999999999
Q ss_pred EEEECCCCceeeceeeeeeccCCCC---------CCCCeEEEEEeCCCCEEEEEeCCcEEEEECCC-CceeeeecCCCCC
Q 003871 611 CVWDAVGWKKLCSKFLHSFQTGLVP---------ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT-LNHTSQLVPDKMD 680 (790)
Q Consensus 611 ~vwd~~~~~~~~~~~l~~~~~~~~~---------~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~-~~~~~~~~~~~h~ 680 (790)
++||+++++... ..+. ...+|.. +...|.+++|+|++++|+++.++.|++||+++ ++++..+..+...
T Consensus 252 ~iwd~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~ 329 (447)
T 3dw8_B 252 RLCDMRASALCD-RHSK-LFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYL 329 (447)
T ss_dssp EEEETTTCSSSC-TTCE-EECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGG
T ss_pred EEEECcCCcccc-ceee-EeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccc
Confidence 999999865311 0122 2223320 00289999999999999997559999999997 8888877653110
Q ss_pred C-------------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecccccc-----------------------
Q 003871 681 L-------------PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA----------------------- 724 (790)
Q Consensus 681 ~-------------~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~----------------------- 724 (790)
. .+..++|+|++++|++|+.||.|++||+.+++.+... .+...
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLE-ASRENNKPRTVLKPRKVCASGKRKKDEI 408 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEE-CCSTTCCTTCBCCCCCEECSSCCCTTCE
T ss_pred cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeee-ecccccccccccCCccccccCCcccccc
Confidence 0 1345999999999999999999999999999876422 11000
Q ss_pred ---CCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEec
Q 003871 725 ---QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 725 ---~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
...+ ...|. +++||| ++++||+++.|+ +++|..
T Consensus 409 ~~~~~~~-~~~i~--~~~~~p-~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 409 SVDSLDF-NKKIL--HTAWHP-KENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EGGGCCT-TSCCC--EEEECS-SSSEEEEECSSC-EEEEEC
T ss_pred ccccccc-CCcee--EEEECC-CCCEEEEEecce-eeeecc
Confidence 0011 22344 899999 899999998775 888864
No 89
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=9.5e-31 Score=276.40 Aligned_cols=276 Identities=17% Similarity=0.202 Sum_probs=226.0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
++++|| +++ .| |+| .|++|+|||+. ++++... +..++|...|.+++|+|+|+++++|+.||+
T Consensus 29 ~~l~WS-------~~~-~l----Avg-~D~tV~iWd~~----tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~ 90 (318)
T 4ggc_A 29 NLVDWS-------SGN-VL----AVA-LDNSVYLWSAS----SGDILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAE 90 (318)
T ss_dssp BCEEEC-------TTS-EE----EEE-ETTEEEEEETT----TCCEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSE
T ss_pred eEEEEC-------CCC-EE----EEE-eCCEEEEEECC----CCCEEEE-EEecCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 678998 775 55 655 58999999997 4554432 223568999999999999999999999999
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEECCCC-cEEEEEc
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETF-QTLATFA 542 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd~~~~-~~~~~~~ 542 (790)
|++|++.++.. +... .+|...+.++.+.+..+++++ ++.+++|+..++ ..+..+.
T Consensus 91 v~iw~~~~~~~---------------------~~~~--~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~ 147 (318)
T 4ggc_A 91 VQLWDVQQQKR---------------------LRNM--TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 147 (318)
T ss_dssp EEEEETTTTEE---------------------EEEE--ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred EEEeecCCcee---------------------EEEe--cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence 99999876433 2211 268888888887788999999 899999998875 5567788
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce----EEEEcCCCCCEEEEEEeCCCCE---EEEEeCCCcEEEEE
Q 003871 543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNV---LVSSGADAQLCVWD 614 (790)
Q Consensus 543 ~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~----~~~l~~h~~~v~~l~~spdg~~---l~s~s~dg~I~vwd 614 (790)
+|...+..+.+++++ .+++++.||.|++||+.+++. ......|.+.|.+++++|++.. +++++.+++|++||
T Consensus 148 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd 227 (318)
T 4ggc_A 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227 (318)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEE
T ss_pred CccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEe
Confidence 999999999999999 999999999999999988753 3455668889999999997653 34667889999999
Q ss_pred CCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE---eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecC
Q 003871 615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 691 (790)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~---~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d 691 (790)
....... . ... +. ..+..+.|+|++..++++ .|+.|++||+++++++.++.+ |...|++++|+||
T Consensus 228 ~~~~~~~-----~-~~~-~~---~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g--H~~~V~~l~~spd 295 (318)
T 4ggc_A 228 VCSGACL-----S-AVD-AH---SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPD 295 (318)
T ss_dssp TTTCCEE-----E-EEE-CS---SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTT
T ss_pred ccccccc-----c-ccc-ce---eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCC
Confidence 9885422 1 111 22 579999999999988873 689999999999999999865 7899999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCe
Q 003871 692 GKCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 692 g~~l~sgs~dg~i~vwd~~~~~ 713 (790)
|++|++|+.||+|+|||+....
T Consensus 296 g~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 296 GATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp SSCEEEEETTTEEEEECCSCCC
T ss_pred CCEEEEEecCCeEEEEECCCCC
Confidence 9999999999999999987643
No 90
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.9e-32 Score=294.49 Aligned_cols=291 Identities=10% Similarity=0.046 Sum_probs=216.1
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCC-------ceEeeeccccCCCC-----ceeeeeccCCCCCCceEEEEEcCC
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLE-------KSVNLKLQLINEPS-----ECRTLLLPDNSFGGRVVRLIYSHS 452 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~-------~i~iwd~~~~~~~~-----~~~~~~l~~~~h~~~V~~l~~spd 452 (790)
++++|+ |||++| |+|+.|. .|++|+++...... ....+.+ .+|...|.+++++
T Consensus 18 ~sv~fs-------~dg~~l----~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l--~~~~~~v~s~~~~-- 82 (365)
T 4h5i_A 18 YGAKFL-------NNDTLL----VAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFAL--EDNDDSPTAIDAS-- 82 (365)
T ss_dssp EEEEEE-------ETTEEE----EEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEEC--CTTSCCCCEEEEE--
T ss_pred EEEEEe-------CCCcEE----EEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEc--cCCCCceEEEEeC--
Confidence 999999 999999 9987543 59999997422111 0112223 3578888887664
Q ss_pred CCEEEEEe-----------CCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEE
Q 003871 453 GDFLVALT-----------QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 519 (790)
Q Consensus 453 g~~l~s~~-----------~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l 519 (790)
++.++++. .|+.+++|++........ .+ ..........+...+.+++|+ |+++
T Consensus 83 ~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~~v~fSpDg~~l 148 (365)
T 4h5i_A 83 KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLE---------FL-----TSVDFDASTNADDYTKLVYISREGTVA 148 (365)
T ss_dssp TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEE---------EE-----EEECSSCCCCTTCCEEEEEECTTSSCE
T ss_pred CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEE---------Ee-----eeeceeecCCcccCEEEEEEcCCCCEE
Confidence 55677664 356788887654322000 00 001111112456678999999 7876
Q ss_pred EE--ec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEE--EcCCCCCEEEEE
Q 003871 520 FS--AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK--LKGHQNRITCLA 593 (790)
Q Consensus 520 ~s--~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~--l~~h~~~v~~l~ 593 (790)
++ ++ |++|++||+.+++++..+. |...|.+++|+|+| ++++++.+ .+.+|+..+++.+.. ..+|...|.+++
T Consensus 149 a~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 226 (365)
T 4h5i_A 149 AIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKIN 226 (365)
T ss_dssp EEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEE
T ss_pred EEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEE
Confidence 64 44 7999999999999998886 67789999999999 99998855 566777777765543 356888999999
Q ss_pred EeCCCCEEEEEeCCC----cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCC
Q 003871 594 YSLSLNVLVSSGADA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL 668 (790)
Q Consensus 594 ~spdg~~l~s~s~dg----~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~ 668 (790)
|+|+++++++++.|+ .+++||+..+..... ... ...+|. ..|++++|+|+|++||+| .|+.|+|||++++
T Consensus 227 fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~-~~~-~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~ 301 (365)
T 4h5i_A 227 FIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL-RSK-QVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDL 301 (365)
T ss_dssp EEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE-EEE-EEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred EcCCCCEEEEEecCCcceeEEeecccccceecce-eee-eecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence 999999999999887 688899877542211 112 223455 689999999999999995 8999999999999
Q ss_pred ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003871 669 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 669 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
+++..+.. .|...|++++|+|||++|++||.|++|+|||+...
T Consensus 302 ~~~~~~~~-gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 302 SMSKIFKQ-AHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEETT-SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred cEEEEecC-cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99888643 47999999999999999999999999999999653
No 91
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.1e-31 Score=277.99 Aligned_cols=254 Identities=13% Similarity=0.162 Sum_probs=203.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCc-eeeeeccCCCCCCceEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNSFGGRVVR 446 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~-~~~~~l~~~~h~~~V~~ 446 (790)
..+.+|.+.| ++++|+ |||++| |+|+.|++|+|||+... ... ...+ .+|.+.|.+
T Consensus 3 ~~~~~h~~~V-------~~~~~s-------~~g~~l----as~s~D~~v~iw~~~~~--~~~~~~~l----~gH~~~V~~ 58 (297)
T 2pm7_B 3 VIANAHNEMI-------HDAVMD-------YYGKRM----ATCSSDKTIKIFEVEGE--THKLIDTL----TGHEGPVWR 58 (297)
T ss_dssp EECCSCSSCE-------EEEEEC-------TTSSEE----EEEETTSCEEEEEBCSS--CBCCCEEE----CCCSSCEEE
T ss_pred eeccCCcCce-------EEEEEC-------CCCCEE----EEEeCCCEEEEEecCCC--CcEEEEEE----ccccCCeEE
Confidence 3567899999 999999 999999 99999999999999631 112 2232 379999999
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecC
Q 003871 447 LIYSHS--GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASG 524 (790)
Q Consensus 447 l~~spd--g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sd 524 (790)
++|+|+ |++|++++.|++|++||+.++..
T Consensus 59 v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~------------------------------------------------- 89 (297)
T 2pm7_B 59 VDWAHPKFGTILASCSYDGKVMIWKEENGRW------------------------------------------------- 89 (297)
T ss_dssp EEECCGGGCSEEEEEETTTEEEEEEBSSSCB-------------------------------------------------
T ss_pred EEecCCCcCCEEEEEcCCCEEEEEEcCCCce-------------------------------------------------
Confidence 999864 89999999999999998764211
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCc--eEEEEcCCCCCEEEEEEeCC--
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCLAYSLS-- 597 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~--g-~l~sgs~dg~I~iwd~~~~~--~~~~l~~h~~~v~~l~~spd-- 597 (790)
..+..+.+|...|.+++|+|+ + ++++|+.|++|++||++++. ....+.+|...|.+++|+|+
T Consensus 90 -----------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 90 -----------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158 (297)
T ss_dssp -----------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred -----------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence 122344568889999999998 7 99999999999999998763 24567889999999999997
Q ss_pred -----------CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCC---CEEEEE-eCCcEEE
Q 003871 598 -----------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ---IHLLSI-HEGQIDV 662 (790)
Q Consensus 598 -----------g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~---~~l~~~-~dg~I~i 662 (790)
+++|++|+.|++|++||+++++... .... ...+|. ..|.+++|+|++ .+|+++ .|++|++
T Consensus 159 ~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~-~~~~-~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp -----------CCEEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred cccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE-EEEE-EecCCC---CceEEEEECCCCCCceEEEEEECCCcEEE
Confidence 5799999999999999998754211 1222 334666 799999999985 788884 8999999
Q ss_pred EECCCCc---eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 003871 663 YEAPTLN---HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 663 wd~~~~~---~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~ 710 (790)
||+++.. ....+....|...|.+++|+|+|++|++++.||.|++|+..
T Consensus 234 Wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9997643 12223223467899999999999999999999999999976
No 92
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6.8e-31 Score=291.32 Aligned_cols=277 Identities=14% Similarity=0.188 Sum_probs=226.4
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcE
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH 518 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~ 518 (790)
+|...|.++++ +++++++|+.||.|++||+.++.. ... ..+|...|.+++|.+++
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~---------------------~~~--~~~h~~~v~~l~~~~~~ 185 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC---------------------KRI--LTGHTGSVLCLQYDERV 185 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE---------------------EEE--ECCCSSCEEEEECCSSE
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE---------------------EEE--EcCCCCcEEEEEECCCE
Confidence 46778988877 789999999999999999876433 221 12699999999999889
Q ss_pred EEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceE---EEEcCCCCCEEEEEE
Q 003871 519 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTK---AKLKGHQNRITCLAY 594 (790)
Q Consensus 519 l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~---~~l~~h~~~v~~l~~ 594 (790)
+++|+ ||.|++||+.+++.+..+.+|...|.+++|+++ .+++|+.||.|++||+.++... ..+.+|...|.+++|
T Consensus 186 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 264 (435)
T 1p22_A 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 264 (435)
T ss_dssp EEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe
Confidence 99999 999999999999999999999999999999643 9999999999999999988655 677889999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeee
Q 003871 595 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ 673 (790)
Q Consensus 595 spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~ 673 (790)
+++++++|+.|+.|++||+++++. +..+ .+|. ..|.+++|+ +.+++++ .||.|++||+++++++..
T Consensus 265 --~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~-~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~ 331 (435)
T 1p22_A 265 --DDKYIVSASGDRTIKVWNTSTCEF-----VRTL-NGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV 331 (435)
T ss_dssp --ETTEEEEEETTSEEEEEETTTCCE-----EEEE-ECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred --CCCEEEEEeCCCeEEEEECCcCcE-----EEEE-cCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 678999999999999999998543 3322 3455 689999995 5688885 899999999999999988
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe---------EEEEeccccccCCCCcccccceEEEEEecCC
Q 003871 674 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE---------LRCQINLTAYAQPGTISLELYPLVIAAHPLE 744 (790)
Q Consensus 674 ~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~---------~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d 744 (790)
+.. |...|.+++| ++++|++|+.||.|++||+.+++ .+..+. +| .+.|. +++| +
T Consensus 332 ~~~--h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------~h-~~~v~--~l~~---~ 394 (435)
T 1p22_A 332 LEG--HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-------EH-SGRVF--RLQF---D 394 (435)
T ss_dssp ECC--CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC-------CC-SSCCC--CEEE---C
T ss_pred EeC--CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc-------CC-CCCeE--EEEe---C
Confidence 864 6889999999 78999999999999999997765 566654 44 45677 7888 4
Q ss_pred CCEEEEEeCCCcEEEEecCCCcccccc
Q 003871 745 PNRIALGLTNGRVHVIEPLESEVEWGK 771 (790)
Q Consensus 745 ~~~las~s~Dg~i~iW~~~~~~~~w~~ 771 (790)
+.+|++|+.||+|++|++.++......
T Consensus 395 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 395 EFQIVSSSHDDTILIWDFLNDPAAQAE 421 (435)
T ss_dssp SSCEEECCSSSEEEEEC----------
T ss_pred CCEEEEEeCCCEEEEEECCCCCCcccC
Confidence 678999999999999999887655443
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.6e-32 Score=284.51 Aligned_cols=247 Identities=11% Similarity=0.115 Sum_probs=199.8
Q ss_pred CCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCc--EEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCC
Q 003871 504 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 575 (790)
Q Consensus 504 ~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~--~~~~~~~~~~~v~~l~~s~~--g-~l~sgs~dg~I~iwd~~~ 575 (790)
+|...|++++|+ |++|++|+ |++|++||+.+++ .+..+.+|...|.+++|+|+ + +|++|+.|++|++||+++
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 799999999999 89999999 9999999998774 46788899999999999863 7 999999999999999998
Q ss_pred Cc--eEEEEcCCCCCEEEEEEeCC--CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC---
Q 003871 576 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--- 648 (790)
Q Consensus 576 ~~--~~~~l~~h~~~v~~l~~spd--g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~--- 648 (790)
++ ....+.+|...|++++|+|+ +.+|++|+.|++|++||++++.. ........+|. ..+.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~---~~~~~~~~~h~---~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ---WEVKKINNAHT---IGCNAVSWAPAVVP 164 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC---EEECCBTTSSS---SCBCCCEECCCCCC
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC---cceeeeecccc---CCcceEEEccccCC
Confidence 73 56778899999999999997 78999999999999999987421 11112344565 68999999997
Q ss_pred --------------CCEEEEE-eCCcEEEEECCCC---ceeeeecCCCCCCCeEEEEEecCC----CEEEEEEcCCeEEE
Q 003871 649 --------------QIHLLSI-HEGQIDVYEAPTL---NHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKV 706 (790)
Q Consensus 649 --------------~~~l~~~-~dg~I~iwd~~~~---~~~~~~~~~~h~~~v~~l~~s~dg----~~l~sgs~dg~i~v 706 (790)
+++|+++ .|+.|++||++.+ +++..+. .|...|.+++|+|++ ++|++|+.|++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~--~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE--AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB--CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc--cCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 3678874 8999999999755 3455554 478999999999987 89999999999999
Q ss_pred EECCCCe----EEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccccc
Q 003871 707 FDTSTLE----LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 770 (790)
Q Consensus 707 wd~~~~~----~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~ 770 (790)
|++.+.. ....+. +| ...|+ +++|+| ++++||+++.||+|++|+.... ..|.
T Consensus 243 w~~~~~~~~~~~~~~~~-------~~-~~~v~--~v~~sp-~g~~las~~~D~~v~lw~~~~~-g~~~ 298 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLH-------KF-NDVVW--HVSWSI-TANILAVSGGDNKVTLWKESVD-GQWV 298 (316)
T ss_dssp EECSSTTCCCCBCCEEE-------EC-SSCEE--EEEECT-TTCCEEEEESSSCEEEEEECTT-SCEE
T ss_pred EEccCccccchhhhhhh-------cC-CCcEE--EEEEcC-CCCEEEEEcCCCeEEEEEECCC-CcEE
Confidence 9998631 111221 33 44666 999999 8999999999999999998643 2354
No 94
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-32 Score=296.08 Aligned_cols=320 Identities=10% Similarity=0.008 Sum_probs=219.6
Q ss_pred ccCCCccccccccCCC-------CCCCcceeeeccCCCc--ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 325 QIMDWWVPYCINVMPN-------ANNETISLKDFPTVSN--LRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQS 395 (790)
Q Consensus 325 ~h~~~v~v~~i~fspd-------~~d~~i~l~iwd~~~g--~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~ 395 (790)
.+.+.|. +++|+|+ +.|+.|+ +||..++ +.+ ..+.+|...| ++++|+
T Consensus 9 ~~~~~v~--~~~~s~~g~~l~~~~~d~~i~--iw~~~~~~~~~~--------~~~~~h~~~v-------~~~~~s----- 64 (377)
T 3dwl_C 9 ILPKPSY--EHAFNSQRTEFVTTTATNQVE--LYEQDGNGWKHA--------RTFSDHDKIV-------TCVDWA----- 64 (377)
T ss_dssp ECSSCCS--CCEECSSSSEEECCCSSSCBC--EEEEETTEEEEC--------CCBCCCSSCE-------EEEEEC-----
T ss_pred cCCCcEE--EEEECCCCCEEEEecCCCEEE--EEEccCCceEEE--------EEEecCCceE-------EEEEEe-----
Confidence 3555666 9999999 6899999 9999988 565 8899999999 999999
Q ss_pred CCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 003871 396 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 475 (790)
Q Consensus 396 ~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~ 475 (790)
|||+++ ++++.|++|++||+...........+ .+|...|.+++|+|++++|++++.|+.|++||+.++..
T Consensus 65 --~~~~~l----~s~s~d~~v~vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 65 --PKSNRI----VTCSQDRNAYVYEKRPDGTWKQTLVL----LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND 134 (377)
T ss_dssp --TTTCCE----EEEETTSSEEEC------CCCCEEEC----CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----
T ss_pred --CCCCEE----EEEeCCCeEEEEEcCCCCceeeeeEe----cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc
Confidence 999999 99999999999999742101122222 36999999999999999999999999999999876431
Q ss_pred cccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECC------------------C
Q 003871 476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE------------------T 534 (790)
Q Consensus 476 ~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~------------------~ 534 (790)
|. +... +...|...|.+++|+ +++|++++ |+.|++||+. .
T Consensus 135 -------------~~-----~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 195 (377)
T 3dwl_C 135 -------------WW-----VSKH-LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPF 195 (377)
T ss_dssp -------------CC-----CCEE-ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCE
T ss_pred -------------ce-----eeeE-eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccch
Confidence 00 0111 111389999999999 88999998 9999999985 3
Q ss_pred CcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce----EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCc
Q 003871 535 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 609 (790)
Q Consensus 535 ~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~----~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~ 609 (790)
++++..+ +|...|.+++|+|++ +|++|+.||.|++||+.+++. +..+.+|...|.+++|+|++++|++|+.++.
T Consensus 196 ~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 274 (377)
T 3dwl_C 196 NTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSP 274 (377)
T ss_dssp EEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSE
T ss_pred hhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcE
Confidence 5566666 899999999999999 999999999999999999887 7788899999999999999999999886666
Q ss_pred EEEEECCCCceeeceeeeeeccCCCC---------CCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCC
Q 003871 610 LCVWDAVGWKKLCSKFLHSFQTGLVP---------ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM 679 (790)
Q Consensus 610 I~vwd~~~~~~~~~~~l~~~~~~~~~---------~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h 679 (790)
+ +|+...........+. ....... ......++.|++....+.. ...+... ....+. ..|
T Consensus 275 ~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~-~~H 343 (377)
T 3dwl_C 275 I-LLQGNESGWAHTRDLD-AGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ--------SISSLP-TVH 343 (377)
T ss_dssp E-EECCCC---CCSBCCC-SCCCCCCBSSSSSBCCCCCC---------------------------------CCCS-SSC
T ss_pred E-EEEeCCCceEEEeeec-ccccccccccccccccccccccccccccccccccchhhccccc--------cccccC-ccc
Confidence 6 6766532211111111 0000000 0011334444443222221 1111111 111111 247
Q ss_pred CCCeEEEEEecCC-C---EEEEEEcCCeEEEEEC
Q 003871 680 DLPITYATYSCDG-K---CIYVSCKSGHVKVFDT 709 (790)
Q Consensus 680 ~~~v~~l~~s~dg-~---~l~sgs~dg~i~vwd~ 709 (790)
...|+++++.++. . .|++|+.||.|++||+
T Consensus 344 ~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 344 QNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 8999999976543 3 6999999999999985
No 95
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.6e-31 Score=290.76 Aligned_cols=292 Identities=10% Similarity=0.068 Sum_probs=224.3
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
.+++|+ |||+++ ||++.|++|+ |.. ...+. .+|...|++++|+|+| .++.
T Consensus 19 ~sv~~S-------pDG~~i----ASas~D~TV~--d~~----~~~~l------~gh~~~v~~V~FsPdg-------~~~~ 68 (588)
T 2j04_A 19 NNLTWA-------RDGTLY----LTTFPDISIG--QPK----YAKDI------NCNSKNLFHVKEFPLE-------FENK 68 (588)
T ss_dssp CCEEEC-------TTSCEE----EECSSSEEEE--EEC----CCSCC------SSBGGGTEEEEEECCC-------CCCT
T ss_pred EEEEEC-------CCCCEE----EEEcCCceee--ccc----cccee------cCCCccEEEEEECCCC-------Ccce
Confidence 899999 999999 9999999999 643 23222 2799999999999999 4555
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEE
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 541 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~ 541 (790)
+.+|+.+... . +...|...|.+++|+ |.+||+++ ||.|++||..+ ++..+
T Consensus 69 ~~~~~~~~~~---------------------~----~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l 121 (588)
T 2j04_A 69 LDFELAQQNG---------------------L----LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNL 121 (588)
T ss_dssp TTTSCCCSSC---------------------S----STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEEC
T ss_pred EEEEeCCCce---------------------E----eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeec
Confidence 5554433211 1 111468899999999 99999999 99999999654 66666
Q ss_pred cCCCC-----CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-------eEEEE----cCCCCCEEEEEEeCCCCEEEEE
Q 003871 542 ANPPP-----IATYFILLPQD-LFAFGFDDSSILVHCPCTKK-------TKAKL----KGHQNRITCLAYSLSLNVLVSS 604 (790)
Q Consensus 542 ~~~~~-----~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~-------~~~~l----~~h~~~v~~l~~spdg~~l~s~ 604 (790)
. |.. .+.+++||||| +|++|+.||+|++||+.++. .+..+ .+|...|.+++|+||| ++++
T Consensus 122 ~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laas 198 (588)
T 2j04_A 122 D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAA 198 (588)
T ss_dssp C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEE
T ss_pred c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEE
Confidence 6 655 49999999999 99999999999999999885 35676 6688899999999999 8889
Q ss_pred eCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeE
Q 003871 605 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPIT 684 (790)
Q Consensus 605 s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~ 684 (790)
+.|++|++||+.++... ...+++..+|. ..|.+++|+ |..||++.+++|++||+.+++...... +|...|.
T Consensus 199 s~D~tVrlWd~~~~~~~--~~~~tL~~~h~---~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~--gh~~~V~ 269 (588)
T 2j04_A 199 LSNNSVFSMTVSASSHQ--PVSRMIQNASR---RKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKT--GSLENFH 269 (588)
T ss_dssp ETTCCEEEECCCSSSSC--CCEEEEECCCS---SCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEEC--SCCSCCC
T ss_pred eCCCeEEEEECCCCccc--cceeeeccccc---CcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEc--CCCceEE
Confidence 99999999999885421 11222334555 689999999 688998878999999998777633332 3799999
Q ss_pred EEEE--ecCCCEEEEEEcCCeEEEEECCCCeEEEEecccc------------ccCCCC------cccccceEEEEEecCC
Q 003871 685 YATY--SCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA------------YAQPGT------ISLELYPLVIAAHPLE 744 (790)
Q Consensus 685 ~l~~--s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~------------~~~~gh------~~~~v~~~~v~~sp~d 744 (790)
.++| +||+..++++++||+ ++|....- . +.+.. +...|. +...|+ +++|+| |
T Consensus 270 ~va~~~s~d~~~La~a~edG~-klw~~d~~---~-~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~--~va~SP-d 341 (588)
T 2j04_A 270 IIPLNHEKESTILLMSNKTSY-KVLLEDEL---H-VTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIH--GISLSP-D 341 (588)
T ss_dssp EEEETTCSSCEEEEECSSCEE-EEEESSSE---E-EECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEE--EEEECT-T
T ss_pred EEEeeeCCCCCEEEEEcCCCC-EEEeeccE---E-ECCCceEEEEcCCEEEEEECCCCceeeeccceEEE--EEEECC-C
Confidence 9999 999999999999999 99998621 1 22111 001010 022355 999999 8
Q ss_pred CCEEEEEeC
Q 003871 745 PNRIALGLT 753 (790)
Q Consensus 745 ~~~las~s~ 753 (790)
|..+|+++.
T Consensus 342 G~~lA~~~~ 350 (588)
T 2j04_A 342 GYSIAIVYD 350 (588)
T ss_dssp SSEEEEEEE
T ss_pred CCEEEEEEe
Confidence 999999873
No 96
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=4.3e-30 Score=274.20 Aligned_cols=259 Identities=13% Similarity=0.117 Sum_probs=208.3
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCc
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGS 517 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 517 (790)
.+|.+.|.+++|+|++++|++++.||.|++|++.++..
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------------------------------------ 45 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS------------------------------------------ 45 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC------------------------------------------
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC------------------------------------------
Confidence 37999999999999999999999999999998764221
Q ss_pred EEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcC--CC-eEEEEeCCCcEEEEeCCCC---------ceEEEEcCC
Q 003871 518 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCPCTK---------KTKAKLKGH 585 (790)
Q Consensus 518 ~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~--~g-~l~sgs~dg~I~iwd~~~~---------~~~~~l~~h 585 (790)
..+....+.+|...|.+++|+| ++ +|++|+.||.|++||+.++ +.+..+.+|
T Consensus 46 ----------------~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 109 (351)
T 3f3f_A 46 ----------------NWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDS 109 (351)
T ss_dssp ----------------CEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCC
T ss_pred ----------------cceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeeccc
Confidence 0134566678999999999999 58 9999999999999999887 557788899
Q ss_pred CCCEEEEEEeCC--CCEEEEEeCCCcEEEEECCCCceeeceeee----e---eccCCCCCCCCeEEEEEeCC---CCEEE
Q 003871 586 QNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLH----S---FQTGLVPETTIVNHIQFHPD---QIHLL 653 (790)
Q Consensus 586 ~~~v~~l~~spd--g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~----~---~~~~~~~~~~~v~~i~~sp~---~~~l~ 653 (790)
...|.+++|+|+ ++++++++.|+.|++||+++++........ . ....+. ..+.+++|+|+ +..++
T Consensus 110 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~l~ 186 (351)
T 3f3f_A 110 KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL---QSDFCLSWCPSRFSPEKLA 186 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS---CCCEEEEECCCSSSCCEEE
T ss_pred CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc---cceeEEEeccCCCCCcEEE
Confidence 999999999999 999999999999999999986543322111 0 112333 68999999997 88888
Q ss_pred EE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC----CEEEEEEcCCeEEEEECCCC----------------
Q 003871 654 SI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKVFDTSTL---------------- 712 (790)
Q Consensus 654 ~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg----~~l~sgs~dg~i~vwd~~~~---------------- 712 (790)
++ .++.+.+|+...++.........|...|++++|+|++ ++|++|+.||.|++||+.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 266 (351)
T 3f3f_A 187 VSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMF 266 (351)
T ss_dssp EEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------
T ss_pred EecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceecc
Confidence 85 7888888888777653333334578999999999998 89999999999999999875
Q ss_pred ------------------------------eEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEec
Q 003871 713 ------------------------------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 713 ------------------------------~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
+.+..+. +| ...|+ +++|+| ++++|++|+.||.|++|++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h-~~~v~--~~~~s~-~~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 267 DNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-------DH-NGEVW--SVSWNL-TGTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp ------------------------CCSEEEEEEEEEC-------TT-SSCEE--EEEECS-SSCCEEEEETTSCEEEEEE
T ss_pred CCCcccccccccccccccceeeeecccccccEEEEEe-------cc-cccEE--EEEEcC-CCCEEEEecCCCcEEEEec
Confidence 2233332 45 44566 999999 8999999999999999999
Q ss_pred CCCccc
Q 003871 763 LESEVE 768 (790)
Q Consensus 763 ~~~~~~ 768 (790)
.+++..
T Consensus 336 ~~~~~~ 341 (351)
T 3f3f_A 336 TYSNEF 341 (351)
T ss_dssp CTTSCE
T ss_pred CcCcch
Confidence 987643
No 97
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=1.2e-30 Score=286.21 Aligned_cols=293 Identities=12% Similarity=0.061 Sum_probs=231.2
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcC-CCCEEEEEeCCC
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTA 463 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~sp-dg~~l~s~~~dg 463 (790)
..++++ |+...+ +++++.||.|+||++.. .+..........+|.+.|.+++|+| ++++|++++.||
T Consensus 38 ~~~~~~-------~~~~~~---~~~~~~~g~i~v~~~~~---~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg 104 (402)
T 2aq5_A 38 GFCAVN-------PKFMAL---ICEASGGGAFLVLPLGK---TGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDC 104 (402)
T ss_dssp CSEEEC-------SSEEEE---EBCCSSSCCEEEEETTC---CEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTS
T ss_pred CcEEEC-------CCeEEE---EEEEcCCCEEEEEECcc---CCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCC
Confidence 456666 665544 36789999999999963 2221110000147999999999999 999999999999
Q ss_pred cEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C-cEEEEec-CCeEEEEECCCCcEEE
Q 003871 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSLETFQTLA 539 (790)
Q Consensus 464 ~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~-~~l~s~s-dg~I~vwd~~~~~~~~ 539 (790)
.|++|++.++... .... .... ...+|...|.+++|+ + +++++++ ||.|++||+.+++.+.
T Consensus 105 ~v~vw~~~~~~~~------------~~~~--~~~~--~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 168 (402)
T 2aq5_A 105 TVMVWEIPDGGLV------------LPLR--EPVI--TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL 168 (402)
T ss_dssp EEEEEECCTTCCS------------SCBC--SCSE--EEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred eEEEEEccCCCCc------------cccC--CceE--EecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE
Confidence 9999999875320 0000 0111 112699999999999 4 6899988 9999999999999999
Q ss_pred EE--cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEE-cCCCCC-EEEEEEeCCCCEEEEE---eCCCcEE
Q 003871 540 TF--ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNR-ITCLAYSLSLNVLVSS---GADAQLC 611 (790)
Q Consensus 540 ~~--~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l-~~h~~~-v~~l~~spdg~~l~s~---s~dg~I~ 611 (790)
.+ ..|...|.+++|+|++ .|++|+.||.|++||+++++.+..+ .+|.+. +.+++|+|+++++++| +.|+.|+
T Consensus 169 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 169 TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVA 248 (402)
T ss_dssp EECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred EEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEE
Confidence 99 7899999999999999 9999999999999999999999888 788776 8999999999999999 7899999
Q ss_pred EEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E-eCCcEEEEECCCCce-eeeecCCCCCCCeEEEEE
Q 003871 612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATY 688 (790)
Q Consensus 612 vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~I~iwd~~~~~~-~~~~~~~~h~~~v~~l~~ 688 (790)
+||+++++. ++......+. ..+.+++|+|+++++++ + .|+.|++||+.+++. +..+....|...|.+++|
T Consensus 249 iwd~~~~~~----~~~~~~~~~~---~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~ 321 (402)
T 2aq5_A 249 LWDTKHLEE----PLSLQELDTS---SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGY 321 (402)
T ss_dssp EEETTBCSS----CSEEEECCCC---SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEE
T ss_pred EEcCccccC----CceEEeccCC---CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEE
Confidence 999988542 1221222333 57999999999999975 5 699999999998874 444444345789999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEE
Q 003871 689 SCDGKCIYVSCKSGHVKVFDTSTLELR 715 (790)
Q Consensus 689 s~dg~~l~sgs~dg~i~vwd~~~~~~~ 715 (790)
+|++.++++ .++.+++|++.+++..
T Consensus 322 sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 322 MPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp CCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred eccccccee--cceeEEEEEcCCCcEE
Confidence 999998875 5679999999987654
No 98
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=1.7e-30 Score=288.73 Aligned_cols=307 Identities=11% Similarity=0.091 Sum_probs=224.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCC-----CC---ceeeeeccCCCCC--
Q 003871 372 GRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINE-----PS---ECRTLLLPDNSFG-- 441 (790)
Q Consensus 372 ~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~-----~~---~~~~~~l~~~~h~-- 441 (790)
.|.+.| ++++|+ |||++| |+|+.||.|+|||+..... .. ....+ .+|.
T Consensus 26 ~~~~~V-------~~v~~s-------~~g~~l----a~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~----~~h~~~ 83 (447)
T 3dw8_B 26 AEADII-------STVEFN-------HSGELL----ATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF----QSHEPE 83 (447)
T ss_dssp CGGGSE-------EEEEEC-------SSSSEE----EEEETTSEEEEEEECC-----CCCCCCEEEEEEE----ECCCCE
T ss_pred cccCcE-------EEEEEC-------CCCCEE----EEEcCCCeEEEEEecCCCCCCcccccceeEeccc----cccccc
Confidence 466777 999999 999999 9999999999999974210 00 12222 3687
Q ss_pred ----------CceEEEEEcCCC--CEEEEEeCCCcEEEEecCCCCcc---------ccccc-----cccc-----ccccc
Q 003871 442 ----------GRVVRLIYSHSG--DFLVALTQTATHKLWKWQSNKQS---------LEEEN-----VNME-----SQLYQ 490 (790)
Q Consensus 442 ----------~~V~~l~~spdg--~~l~s~~~dg~i~vw~~~~~~~~---------~g~~~-----~~~~-----~~i~~ 490 (790)
..|.+++|+|++ .++++++.|++|++|++.+.... .|... .... +.-+.
T Consensus 84 ~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 163 (447)
T 3dw8_B 84 FDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLM 163 (447)
T ss_dssp EEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEE
T ss_pred ccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchhee
Confidence 889999999998 79999999999999998763320 00000 0000 00000
Q ss_pred CCCceeeeecccCCCCCCeEEEEec--CcEEEEecCCeEEEEECCC-CcEEEE-------EcCCCCCeEEEEEcCCC--e
Q 003871 491 PSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLET-FQTLAT-------FANPPPIATYFILLPQD--L 558 (790)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~sdg~I~vwd~~~-~~~~~~-------~~~~~~~v~~l~~s~~g--~ 558 (790)
... ... ..+..+|...|.+++|+ +++|++|.|+.|++||+.+ ++.... +.+|...|.+++|+|++ .
T Consensus 164 ~~~-~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 241 (447)
T 3dw8_B 164 VEA-SPR-RIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNT 241 (447)
T ss_dssp EEE-EEE-EEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTE
T ss_pred eec-cce-EEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcE
Confidence 000 000 01224799999999999 8899998899999999984 444442 45789999999999997 9
Q ss_pred EEEEeCCCcEEEEeCCCCce----EEEEcCCCC------------CEEEEEEeCCCCEEEEEeCCCcEEEEECCC-Ccee
Q 003871 559 FAFGFDDSSILVHCPCTKKT----KAKLKGHQN------------RITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKL 621 (790)
Q Consensus 559 l~sgs~dg~I~iwd~~~~~~----~~~l~~h~~------------~v~~l~~spdg~~l~s~s~dg~I~vwd~~~-~~~~ 621 (790)
+++|+.||.|++||+++++. +..+.+|.. .|.+++|+|+|++|++++. +.|++||+++ ++.
T Consensus 242 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~- 319 (447)
T 3dw8_B 242 FVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP- 319 (447)
T ss_dssp EEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC-
T ss_pred EEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc-
Confidence 99999999999999999886 788888876 8999999999999999998 9999999986 432
Q ss_pred eceeeeeeccCCCCCC------------CCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecC------------
Q 003871 622 CSKFLHSFQTGLVPET------------TIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVP------------ 676 (790)
Q Consensus 622 ~~~~l~~~~~~~~~~~------------~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~------------ 676 (790)
+..+ .+|.... ..+..++|+|++++|+++ .||.|++||+.+++.+.....
T Consensus 320 ----~~~~-~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 394 (447)
T 3dw8_B 320 ----VETY-QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKP 394 (447)
T ss_dssp ----SCCE-ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCC
T ss_pred ----ccee-eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCC
Confidence 2211 2222000 013459999999999986 899999999998876531110
Q ss_pred ------------------CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 003871 677 ------------------DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 677 ------------------~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~ 710 (790)
..+...|..++|+|++++|++++.++ +++|..+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 395 RKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 02346789999999999999998776 7788643
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=5.4e-30 Score=276.20 Aligned_cols=282 Identities=13% Similarity=0.101 Sum_probs=225.7
Q ss_pred CCCCCceEEEEEcCC---CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEe
Q 003871 438 NSFGGRVVRLIYSHS---GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 514 (790)
Q Consensus 438 ~~h~~~V~~l~~spd---g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~ 514 (790)
.+|.+.|.+++|+|+ |++|++++.||.|++|++.+... ..... ..+|...|.+++|
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~--~~~h~~~v~~~~~ 94 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------------------TIPKA--QQMHTGPVLDVCW 94 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-------------------EEEEE--EEECSSCEEEEEE
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-------------------eeEEE--eccccCCEEEEEE
Confidence 379999999999999 69999999999999999876221 01111 1258999999999
Q ss_pred c--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEE--cCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCC
Q 003871 515 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL--LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 588 (790)
Q Consensus 515 s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~--s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~ 588 (790)
+ +++|++++ ||.|++||+.+++... +..|...|.+++| +|++ .+++|+.||.|++||+++++.+..+..|. .
T Consensus 95 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~ 172 (368)
T 3mmy_A 95 SDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-R 172 (368)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-C
T ss_pred CcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-C
Confidence 9 88999998 9999999999988776 4569999999999 8999 99999999999999999999988888665 5
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCE----EEE-EeCCcEEEE
Q 003871 589 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH----LLS-IHEGQIDVY 663 (790)
Q Consensus 589 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~----l~~-~~dg~I~iw 663 (790)
+.++.+.+ ..+++++.++.+++||++.... ........+. ..+.++++.++... +++ +.|+.|++|
T Consensus 173 ~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 173 CYCADVIY--PMAVVATAERGLIVYQLENQPS----EFRRIESPLK---HQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp EEEEEEET--TEEEEEEGGGCEEEEECSSSCE----EEEECCCSCS---SCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred ceEEEecC--CeeEEEeCCCcEEEEEeccccc----hhhhcccccc---CCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 66776664 4888899999999999987532 2221222222 45677777665543 666 589999999
Q ss_pred ECCCC---ceeeeecCCCCCC------------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCC
Q 003871 664 EAPTL---NHTSQLVPDKMDL------------PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT 728 (790)
Q Consensus 664 d~~~~---~~~~~~~~~~h~~------------~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh 728 (790)
|++.. ..+..+.. |.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+. +|
T Consensus 244 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~ 314 (368)
T 3mmy_A 244 YINPPNPAKDNFTFKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-------QL 314 (368)
T ss_dssp ESSCSCHHHHSEEEEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-------CC
T ss_pred ecCCCCccccceeeee--eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-------CC
Confidence 99877 44555543 333 79999999999999999999999999999999888876 44
Q ss_pred cccccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 729 ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 729 ~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
...|. +++|+| ++.+|++++.|+..+.|++-.
T Consensus 315 -~~~v~--~~~~s~-~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 315 -DQPIS--ACCFNH-NGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp -SSCEE--EEEECT-TSSCEEEEECCCSTTCGGGCC
T ss_pred -CCCce--EEEECC-CCCeEEEEecccccccccccC
Confidence 44666 999999 899999999998666666543
No 100
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=7.9e-31 Score=277.50 Aligned_cols=244 Identities=15% Similarity=0.179 Sum_probs=197.0
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.+|.+.|++++|+|+|++|++|+.|++|++||+.++.. ..... ..+|..+|.+++|+
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-------------------~~~~~--l~gH~~~V~~v~~~~~ 68 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-------------------ILIAD--LRGHEGPVWQVAWAHP 68 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-------------------EEEEE--EECCSSCEEEEEECCG
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-------------------EEEEE--EcCCCccEEEEEeCCC
Confidence 37999999999999999999999999999999875321 01111 23799999999996
Q ss_pred --CcEEEEec-CCeEEEEECCCC--cEEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCce---EEEEcC
Q 003871 516 --GSHLFSAS-GGKISIFSLETF--QTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKT---KAKLKG 584 (790)
Q Consensus 516 --~~~l~s~s-dg~I~vwd~~~~--~~~~~~~~~~~~v~~l~~s~~--g-~l~sgs~dg~I~iwd~~~~~~---~~~l~~ 584 (790)
+++|++++ |++|++||++++ +....+.+|...|.+++|+|+ + +|++|+.|++|++||+.++.. ...+.+
T Consensus 69 ~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~ 148 (316)
T 3bg1_A 69 MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA 148 (316)
T ss_dssp GGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred CCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence 68899999 999999999987 466778899999999999998 7 999999999999999987632 345577
Q ss_pred CCCCEEEEEEeCC-----------------CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeC
Q 003871 585 HQNRITCLAYSLS-----------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 647 (790)
Q Consensus 585 h~~~v~~l~~spd-----------------g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp 647 (790)
|...|.+++|+|+ +++|++|+.|++|++||++.+.. ...+. ...+|. ..|.+++|+|
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--~~~~~-~l~~h~---~~V~~v~~sp 222 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ--WKEEQ-KLEAHS---DWVRDVAWAP 222 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC--EEEEE-CCBCCS---SCEEEEECCC
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc--cceee-ecccCC---CceEEEEecC
Confidence 9999999999997 47899999999999999975321 12233 334666 7999999999
Q ss_pred CC----CEEEE-EeCCcEEEEECCCCc----eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 003871 648 DQ----IHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 648 ~~----~~l~~-~~dg~I~iwd~~~~~----~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~ 710 (790)
++ .+|++ +.|++|++||+.+.. ....+. .|...|.+++|+|+|++|++|+.|+.|++|+..
T Consensus 223 ~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 223 SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 86 78888 489999999997631 112232 357899999999999999999999999999976
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=3.5e-30 Score=285.61 Aligned_cols=276 Identities=16% Similarity=0.237 Sum_probs=223.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEc
Q 003871 371 EGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS 450 (790)
Q Consensus 371 ~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~s 450 (790)
.+|...| .+++|. |+++ ++|+.||.|++||+.. +.+.... .+|...|.+++|
T Consensus 130 ~~~~~~v-------~~~~~d---------~~~l----~~g~~dg~i~iwd~~~----~~~~~~~---~~h~~~v~~l~~- 181 (435)
T 1p22_A 130 SETSKGV-------YCLQYD---------DQKI----VSGLRDNTIKIWDKNT----LECKRIL---TGHTGSVLCLQY- 181 (435)
T ss_dssp CSSCCCE-------EEEECC---------SSEE----EEEESSSCEEEEESSS----CCEEEEE---CCCSSCEEEEEC-
T ss_pred cCCCCcE-------EEEEEC---------CCEE----EEEeCCCeEEEEeCCC----CeEEEEE---cCCCCcEEEEEE-
Confidence 3455566 666654 8899 9999999999999973 4443322 379999999998
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEE
Q 003871 451 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISI 529 (790)
Q Consensus 451 pdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~v 529 (790)
+++++++|+.||.|++||+.++.. .... .+|...|.+++|+++++++|+ ||.|++
T Consensus 182 -~~~~l~sg~~dg~i~vwd~~~~~~---------------------~~~~--~~h~~~v~~l~~~~~~l~s~s~dg~i~v 237 (435)
T 1p22_A 182 -DERVIITGSSDSTVRVWDVNTGEM---------------------LNTL--IHHCEAVLHLRFNNGMMVTCSKDRSIAV 237 (435)
T ss_dssp -CSSEEEEEETTSCEEEEESSSCCE---------------------EEEE--CCCCSCEEEEECCTTEEEEEETTSCEEE
T ss_pred -CCCEEEEEcCCCeEEEEECCCCcE---------------------EEEE--cCCCCcEEEEEEcCCEEEEeeCCCcEEE
Confidence 788999999999999999876433 2211 268999999999977888888 999999
Q ss_pred EECCCCcEE---EEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEe
Q 003871 530 FSLETFQTL---ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 605 (790)
Q Consensus 530 wd~~~~~~~---~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s 605 (790)
||+.++... ..+.+|...|.+++| ++ .+++|+.||.|++||+.+++.+..+.+|...|.+++++ ++++++|+
T Consensus 238 wd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~ 313 (435)
T 1p22_A 238 WDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS 313 (435)
T ss_dssp EECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE
T ss_pred EeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEe
Confidence 999987655 667889999999999 66 99999999999999999999999999999999999994 67999999
Q ss_pred CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCc---------eeeeec
Q 003871 606 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN---------HTSQLV 675 (790)
Q Consensus 606 ~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~---------~~~~~~ 675 (790)
.|+.|++||+++++. +. ...+|. ..|.+++| ++.+++++ .||.|++||+.++. ++..+.
T Consensus 314 ~dg~i~iwd~~~~~~-----~~-~~~~h~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 382 (435)
T 1p22_A 314 SDNTIRLWDIECGAC-----LR-VLEGHE---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 382 (435)
T ss_dssp TTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC
T ss_pred CCCeEEEEECCCCCE-----EE-EEeCCc---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc
Confidence 999999999998543 33 233455 68999998 67888885 89999999997665 666664
Q ss_pred CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003871 676 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 717 (790)
Q Consensus 676 ~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~ 717 (790)
.|...|.+++| ++++|++|+.||.|++||+.++.....
T Consensus 383 --~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 383 --EHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp --CCSSCCCCEEE--CSSCEEECCSSSEEEEEC---------
T ss_pred --CCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 37889999999 788999999999999999998765444
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.9e-30 Score=277.21 Aligned_cols=287 Identities=11% Similarity=0.023 Sum_probs=231.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
....+|.+.| ++++|+ |||+++ ++++.|+.|++|++...........+. +|...|.++
T Consensus 5 ~~~~~h~~~v-------~~~~~s-------~~~~~l----~~~~~d~~v~iw~~~~~~~~~~~~~~~----~~~~~v~~~ 62 (342)
T 1yfq_A 5 QIEQAPKDYI-------SDIKII-------PSKSLL----LITSWDGSLTVYKFDIQAKNVDLLQSL----RYKHPLLCC 62 (342)
T ss_dssp ECSSCCSSCE-------EEEEEE-------GGGTEE----EEEETTSEEEEEEEETTTTEEEEEEEE----ECSSCEEEE
T ss_pred ecccCCCCcE-------EEEEEc-------CCCCEE----EEEcCCCeEEEEEeCCCCccccceeee----ecCCceEEE
Confidence 3445899999 999999 999999 999999999999997411000133322 589999999
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEec-CCCCccccccccccccccccCCCceeeeecccCC--CCCCeEEEEec-CcEEEEe
Q 003871 448 IYSHSGD-FLVALTQTATHKLWKW-QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD--PKDSISCFALR-GSHLFSA 522 (790)
Q Consensus 448 ~~spdg~-~l~s~~~dg~i~vw~~-~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~V~~l~~s-~~~l~s~ 522 (790)
+|+|+++ +|++++.||.|++|++ .++.. .. ..+ |...|.+++|+ +++++++
T Consensus 63 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---------------------~~---~~~~~~~~~v~~l~~~~~~~l~s~ 118 (342)
T 1yfq_A 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSF---------------------QA---LTNNEANLGICRICKYGDDKLIAA 118 (342)
T ss_dssp EEEESSSEEEEEEETTSCEEEECSSSSSSE---------------------EE---CBSCCCCSCEEEEEEETTTEEEEE
T ss_pred EECCCCCcEEEEEcCCCeEEEEEeccCCce---------------------Ee---ccccCCCCceEEEEeCCCCEEEEE
Confidence 9999999 9999999999999998 65321 11 125 89999999999 8999999
Q ss_pred c-CCeEEEEECCC---------CcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCC-Cc--eEEEEcCCCCCE
Q 003871 523 S-GGKISIFSLET---------FQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KK--TKAKLKGHQNRI 589 (790)
Q Consensus 523 s-dg~I~vwd~~~---------~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~-~~--~~~~l~~h~~~v 589 (790)
+ |+.|++||+.+ ++++..+. |...|.+++|+|++ +++|+.|+.|++||+++ +. .......|...|
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i 196 (342)
T 1yfq_A 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQI 196 (342)
T ss_dssp ETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCE
T ss_pred cCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCce
Confidence 8 99999999987 66666666 88899999999886 99999999999999998 54 333455688899
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEECCCC--ceeeceeeeeeccCCC------CCCCCeEEEEEeCCCCEEEEE-eCCc
Q 003871 590 TCLAYSL-SLNVLVSSGADAQLCVWDAVGW--KKLCSKFLHSFQTGLV------PETTIVNHIQFHPDQIHLLSI-HEGQ 659 (790)
Q Consensus 590 ~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~--~~~~~~~l~~~~~~~~------~~~~~v~~i~~sp~~~~l~~~-~dg~ 659 (790)
.+++|+| +++++++++.||.|++||++.. ... ......+ ..|. .+...|.+++|+|++++|+++ .||.
T Consensus 197 ~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 274 (342)
T 1yfq_A 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN-SSKRFAF-RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI 274 (342)
T ss_dssp EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT-CTTCEEE-ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred eEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc-cccceee-ecccccccccccceeEEEEEEcCCCCEEEEecCCce
Confidence 9999999 9999999999999999999875 100 0111212 1222 011489999999999999985 8999
Q ss_pred EEEEECCCCceeeeecCCCC-CCCeEEEEEecCCCEEEEEEcCCe-EEEEE
Q 003871 660 IDVYEAPTLNHTSQLVPDKM-DLPITYATYSCDGKCIYVSCKSGH-VKVFD 708 (790)
Q Consensus 660 I~iwd~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~dg~-i~vwd 708 (790)
|++||+.+++.+..+.. | ...|.+++ |++++|++|+.||. .+.|.
T Consensus 275 i~vwd~~~~~~~~~~~~--~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 275 ISCWNLQTRKKIKNFAK--FNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEETTTTEEEEECCC--CSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred EEEEcCccHhHhhhhhc--ccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 99999999999888764 4 88999999 99999999999998 55554
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2e-30 Score=276.80 Aligned_cols=305 Identities=13% Similarity=0.127 Sum_probs=218.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEE
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l 447 (790)
..+.+|.+.| ++++|+ |||+++ ++|+.||.|++||+........... .+ .+|...|.++
T Consensus 5 ~~~~gH~~~v-------~~~~~~-------~~~~~l----~~~~~dg~i~iw~~~~~~~~~~~~~-~~--~~~~~~v~~~ 63 (351)
T 3f3f_A 5 PFDSGHDDLV-------HDVVYD-------FYGRHV----ATCSSDQHIKVFKLDKDTSNWELSD-SW--RAHDSSIVAI 63 (351)
T ss_dssp CEECCCSSCE-------EEEEEC-------SSSSEE----EEEETTSEEEEEEECSSSCCEEEEE-EE--ECCSSCEEEE
T ss_pred ccCcccccce-------eEEEEc-------CCCCEE----EEeeCCCeEEEEECCCCCCcceecc-ee--ccCCCcEEEE
Confidence 5567999999 999999 999999 9999999999999974211111221 11 3699999999
Q ss_pred EEcC--CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec----CcEEEE
Q 003871 448 IYSH--SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFS 521 (790)
Q Consensus 448 ~~sp--dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s----~~~l~s 521 (790)
+|+| ++++|++++.||.|++||+.++.... ......... ...+|...|.+++|+ +.++++
T Consensus 64 ~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~------------~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~ 129 (351)
T 3f3f_A 64 DWASPEYGRIIASASYDKTVKLWEEDPDQEEC------------SGRRWNKLC--TLNDSKGSLYSVKFAPAHLGLKLAC 129 (351)
T ss_dssp EECCGGGCSEEEEEETTSCEEEEEECTTSCTT------------SSCSEEEEE--EECCCSSCEEEEEECCGGGCSEEEE
T ss_pred EEcCCCCCCEEEEEcCCCeEEEEecCCCcccc------------cccCcceee--eecccCCceeEEEEcCCCCCcEEEE
Confidence 9999 69999999999999999998753300 000001111 123689999999999 567888
Q ss_pred ec-CCeEEEEECCCCcEEEEEc-------------CCCCCeEEEEEcCC---C-eEEEEeCCCcEEEEeCCCCce--EEE
Q 003871 522 AS-GGKISIFSLETFQTLATFA-------------NPPPIATYFILLPQ---D-LFAFGFDDSSILVHCPCTKKT--KAK 581 (790)
Q Consensus 522 ~s-dg~I~vwd~~~~~~~~~~~-------------~~~~~v~~l~~s~~---g-~l~sgs~dg~I~iwd~~~~~~--~~~ 581 (790)
++ ||.|++||+.+++.+..+. .+...+.+++|+|+ + .+++++.|+.+.+|+...++. +..
T Consensus 130 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (351)
T 3f3f_A 130 LGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAK 209 (351)
T ss_dssp EETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEE
T ss_pred ecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeee
Confidence 88 9999999998876544332 57778999999998 6 999999999998888887765 677
Q ss_pred EcCCCCCEEEEEEeCCC----CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--
Q 003871 582 LKGHQNRITCLAYSLSL----NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-- 655 (790)
Q Consensus 582 l~~h~~~v~~l~~spdg----~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-- 655 (790)
+.+|...|++++|+|++ ++|++|+.|+.|++||++++.... . ... +. ........++....++.+
T Consensus 210 ~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~-~~~-~~---~~~~~~~~~~~~~~~~~~~~ 280 (351)
T 3f3f_A 210 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPL----A-SEE-SL---TNSNMFDNSADVDMDAQGRS 280 (351)
T ss_dssp CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------------
T ss_pred cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcc----c-cCC-cc---cceeccCCCccccccccccc
Confidence 88899999999999998 899999999999999998743211 1 111 11 233334444444444432
Q ss_pred ---eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 003871 656 ---HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 656 ---~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~ 718 (790)
....+.+|+....+.+..+.. |...|++++|+|++++|++|+.||.|++||+.+++....+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 281 DSNTEEKAELQSNLQVELLSEHDD--HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ----------CCSEEEEEEEEECT--TSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ccccceeeeecccccccEEEEEec--ccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 334466777666677777754 7889999999999999999999999999999998765554
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=3.7e-30 Score=282.23 Aligned_cols=286 Identities=11% Similarity=0.039 Sum_probs=228.0
Q ss_pred eEEEEEcCCCCEEE-EEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEE
Q 003871 444 VVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHL 519 (790)
Q Consensus 444 V~~l~~spdg~~l~-s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l 519 (790)
...++++|+...++ +++.||.|++|++..... .. ... ....+|...|++++|+ +++|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~----~~-------------~~~--~~~~~h~~~V~~~~~~p~~~~~l 97 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGR----VD-------------KNV--PLVCGHTAPVLDIAWCPHNDNVI 97 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEE----CC-------------TTC--CCBCCCSSCEEEEEECTTCTTEE
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCC----CC-------------CCC--ceEecCCCCEEEEEeCCCCCCEE
Confidence 34578888876554 467799999999865321 00 000 0123799999999998 7899
Q ss_pred EEec-CCeEEEEECCCC-------cEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEE--cCCCC
Q 003871 520 FSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL--KGHQN 587 (790)
Q Consensus 520 ~s~s-dg~I~vwd~~~~-------~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l--~~h~~ 587 (790)
++|+ ||.|++||+.++ +.+..+.+|...|.+++|+|++ .+++|+.||.|++||+.+++.+..+ .+|..
T Consensus 98 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 177 (402)
T 2aq5_A 98 ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD 177 (402)
T ss_dssp EEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS
T ss_pred EEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC
Confidence 9999 999999999987 6678889999999999999997 8999999999999999999999999 78999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE----eCCcEEEE
Q 003871 588 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDVY 663 (790)
Q Consensus 588 ~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~----~dg~I~iw 663 (790)
.|.+++|+|++++|++++.|+.|++||+++++ .+..+..+|.. ..+.+++|+|++++++++ .|+.|++|
T Consensus 178 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~iw 250 (402)
T 2aq5_A 178 TIYSVDWSRDGALICTSCRDKRVRVIEPRKGT-----VVAEKDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVALW 250 (402)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----EEEEEECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEEEE
T ss_pred ceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-----eeeeeccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEEEE
Confidence 99999999999999999999999999999854 33323234441 348999999999999987 68999999
Q ss_pred ECCCCce-eeeecCCCCCCCeEEEEEecCCCEEEE-EEcCCeEEEEECCCCeE-EEEeccccccCCCCcccccceEEEEE
Q 003871 664 EAPTLNH-TSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVIAA 740 (790)
Q Consensus 664 d~~~~~~-~~~~~~~~h~~~v~~l~~s~dg~~l~s-gs~dg~i~vwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~v~~ 740 (790)
|+++++. +.... ..|...+.+++|+|++++|++ |+.||.|++||+.+++. +..+..+ . +...+. +++|
T Consensus 251 d~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~-----~-~~~~v~--~~~~ 321 (402)
T 2aq5_A 251 DTKHLEEPLSLQE-LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF-----S-SKESQR--GMGY 321 (402)
T ss_dssp ETTBCSSCSEEEE-CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE-----C-CSSCCS--EEEE
T ss_pred cCccccCCceEEe-ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc-----c-cCCccc--ceEE
Confidence 9998765 33332 235778999999999999975 55799999999999873 4444322 1 145677 9999
Q ss_pred ecCCCCEEEEEeCCCcEEEEecCCCcc
Q 003871 741 HPLEPNRIALGLTNGRVHVIEPLESEV 767 (790)
Q Consensus 741 sp~d~~~las~s~Dg~i~iW~~~~~~~ 767 (790)
+| ++.++++ .|+.+++|++.+++.
T Consensus 322 sp-~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 322 MP-KRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp CC-GGGSCGG--GTEEEEEEEEETTEE
T ss_pred ec-cccccee--cceeEEEEEcCCCcE
Confidence 99 7888765 567999999988653
No 105
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-30 Score=282.85 Aligned_cols=267 Identities=13% Similarity=0.125 Sum_probs=208.3
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-C
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G 516 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~ 516 (790)
..-...|.+++|||||+++|+++.|++|+ |...... + .+|...|.+++|+ .
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---------------------l-----~gh~~~v~~V~FsPd 63 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---------------------I-----NCNSKNLFHVKEFPL 63 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---------------------C-----SSBGGGTEEEEEECC
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--cccccce---------------------e-----cCCCccEEEEEECCC
Confidence 34578999999999999999999999999 5333211 1 3799999999998 3
Q ss_pred cEEEEecCCeEEEEECCCCcEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCC-----CE
Q 003871 517 SHLFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-----RI 589 (790)
Q Consensus 517 ~~l~s~sdg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~-----~v 589 (790)
. .++ .|++.+++....+. .|...|.+++|+|+| .||+++.||.|++||..+ .+..+. |.. .|
T Consensus 64 g-----~~~---~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 64 E-----FEN---KLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp C-----CCC---TTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCE
T ss_pred C-----Ccc---eEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccE
Confidence 2 344 44444444333333 457889999999999 999999999999999643 666667 665 49
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeec--eeeeee---ccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEE
Q 003871 590 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KFLHSF---QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 664 (790)
Q Consensus 590 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~--~~l~~~---~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd 664 (790)
.+++|||||++||+|+.||+|++||+.++..... ..+.++ ..+|. ..|.+++|+|+| +++++.|+.|++||
T Consensus 133 ~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~---~~V~sVawSPdg-Laass~D~tVrlWd 208 (588)
T 2j04_A 133 HCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK---DWVTHIVWYEDV-LVAALSNNSVFSMT 208 (588)
T ss_dssp EEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC---CCEEEEEEETTE-EEEEETTCCEEEEC
T ss_pred EEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccc---ccEEEEEEcCCc-EEEEeCCCeEEEEE
Confidence 9999999999999999999999999998642111 123333 24555 799999999999 55557999999999
Q ss_pred CCCCce---eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEE-
Q 003871 665 APTLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA- 740 (790)
Q Consensus 665 ~~~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~- 740 (790)
+.++.. .+++.. .|...|.+++|+ |++|++++ ++.|++||+.+++...... || ...++ +++|
T Consensus 209 ~~~~~~~~~~~tL~~-~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~-------gh-~~~V~--~va~~ 274 (588)
T 2j04_A 209 VSASSHQPVSRMIQN-ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT-------GS-LENFH--IIPLN 274 (588)
T ss_dssp CCSSSSCCCEEEEEC-CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC-------SC-CSCCC--EEEET
T ss_pred CCCCccccceeeecc-cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc-------CC-CceEE--EEEee
Confidence 987773 244533 367899999999 68999887 6999999999988743332 54 55778 9999
Q ss_pred -ecCCCCEEEEEeCCCcEEEEecC
Q 003871 741 -HPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 741 -sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
+| ++..|++++.||+ ++|...
T Consensus 275 ~s~-d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 275 HEK-ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TCS-SCEEEEECSSCEE-EEEESS
T ss_pred eCC-CCCEEEEEcCCCC-EEEeec
Confidence 99 8999999999999 999974
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-29 Score=272.50 Aligned_cols=248 Identities=15% Similarity=0.183 Sum_probs=207.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 515 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--- 515 (790)
+|.+.|.+++|+|+|++|++++.||.|++|++.... +..... ..+|...|++++|+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-------------------~~~~~~--~~~h~~~v~~~~~~~~~ 67 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------HKLIDT--LTGHEGPVWRVDWAHPK 67 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-------------------EEEEEE--ECCCSSCEEEEEECCGG
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-------------------ceeeeE--ecCCCCcEEEEEeCCCC
Confidence 799999999999999999999999999999986321 112221 23699999999997
Q ss_pred -CcEEEEec-CCeEEEEECCCCc--EEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCc--eEEEEcCCC
Q 003871 516 -GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQ 586 (790)
Q Consensus 516 -~~~l~s~s-dg~I~vwd~~~~~--~~~~~~~~~~~v~~l~~s~~--g-~l~sgs~dg~I~iwd~~~~~--~~~~l~~h~ 586 (790)
+++|++++ ||.|++||+.+++ ....+..|...|.+++|+|+ + .+++|+.||.|++||+.++. ....+.+|.
T Consensus 68 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 68 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp GCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred CCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 68999999 9999999999987 77788889999999999999 8 99999999999999998873 345667899
Q ss_pred CCEEEEEEeC-------------CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC---CC
Q 003871 587 NRITCLAYSL-------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QI 650 (790)
Q Consensus 587 ~~v~~l~~sp-------------dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~---~~ 650 (790)
..|.+++|+| +++++++|+.|+.|++||++++.... .... ...+|. ..|.+++|+|+ +.
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~-~~~~h~---~~v~~~~~sp~~~~~~ 222 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLRS 222 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSSE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-eeEE-EEeccc---CcEeEEEECCCCCCCC
Confidence 9999999999 69999999999999999998754321 1222 334555 68999999999 88
Q ss_pred EEEEE-eCCcEEEEECCCCc---eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003871 651 HLLSI-HEGQIDVYEAPTLN---HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 651 ~l~~~-~dg~I~iwd~~~~~---~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
+|+++ .||.|++||+.++. ....+....|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus 223 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 223 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 89885 89999999998864 2233333346889999999999999999999999999999854
No 107
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-29 Score=273.71 Aligned_cols=244 Identities=12% Similarity=0.085 Sum_probs=206.2
Q ss_pred CCCCCeEEEEec--CcEEEEec-CCeEEEEECC--CCcEEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCC
Q 003871 504 DPKDSISCFALR--GSHLFSAS-GGKISIFSLE--TFQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 575 (790)
Q Consensus 504 ~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~--~~~~~~~~~~~~~~v~~l~~s~~--g-~l~sgs~dg~I~iwd~~~ 575 (790)
+|...|++++|+ +++|++++ ||.|++||+. +++....+.+|...|++++|+|+ + +|++|+.||.|++||+.+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 799999999999 88999998 9999999998 56778888999999999999987 7 999999999999999999
Q ss_pred Cc--eEEEEcCCCCCEEEEEEeCC--CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeC----
Q 003871 576 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---- 647 (790)
Q Consensus 576 ~~--~~~~l~~h~~~v~~l~~spd--g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp---- 647 (790)
++ .+..+.+|...|.+++|+|+ ++++++++.|+.|++||++++...... ...+|. ..|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~~~~~~---~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI----IIDAHA---IGVNSASWAPATIE 161 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE----EEECCT---TCEEEEEECCCC--
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE----EecCCC---CceEEEEEcCcccc
Confidence 87 67788889999999999999 999999999999999999985432211 223454 6899999999
Q ss_pred ---------CCCEEEEE-eCCcEEEEECCCCce----eeeecCCCCCCCeEEEEEecC---CCEEEEEEcCCeEEEEECC
Q 003871 648 ---------DQIHLLSI-HEGQIDVYEAPTLNH----TSQLVPDKMDLPITYATYSCD---GKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 648 ---------~~~~l~~~-~dg~I~iwd~~~~~~----~~~~~~~~h~~~v~~l~~s~d---g~~l~sgs~dg~i~vwd~~ 710 (790)
++.+++++ .|+.|++||++++.. ...+. .|...|.+++|+|+ +++|++++.||.|++||+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe--cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 68899885 899999999987653 33443 47899999999999 8999999999999999999
Q ss_pred CCeE---EEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 711 TLEL---RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 711 ~~~~---~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
++.. ...+.. .+| ...+. +++|+| ++++|++++.||.|++|++..+
T Consensus 240 ~~~~~~~~~~~~~-----~~~-~~~v~--~~~~s~-~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 240 NEQGPWKKTLLKE-----EKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp STTSCCEEEESSS-----SCC-SSCEE--EEEECS-SSCCEEEEESSSSEEEEEEEET
T ss_pred CCCccceeeeecc-----ccC-CCcEE--EEEEcC-CCCEEEEecCCCcEEEEeCCCC
Confidence 8742 222211 123 44566 999999 8999999999999999999854
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.8e-29 Score=271.55 Aligned_cols=291 Identities=10% Similarity=0.072 Sum_probs=209.8
Q ss_pred eccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCc
Q 003871 350 DFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE 429 (790)
Q Consensus 350 iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~ 429 (790)
||+..+.+.+ ..+.+|.+.| ++++|+ |||+++ ++|+.++ +++|+.+. ..
T Consensus 3 i~s~~~~~~~--------~~~~~h~~~V-------~~v~fs-------~dg~~l----a~g~~~~-~~iw~~~~----~~ 51 (355)
T 3vu4_A 3 LGSMITRNPI--------VPENHVSNPV-------TDYEFN-------QDQSCL----ILSTLKS-FEIYNVHP----VA 51 (355)
T ss_dssp ------------------------CCCC-------CEEEEC-------TTSSEE----EEECSSE-EEEEEETT----EE
T ss_pred cccccccCCc--------cccccCCCce-------EEEEEC-------CCCCEE----EEEcCCE-EEEEecCC----cc
Confidence 4555566555 6678899999 999999 999999 9888765 78999863 33
Q ss_pred eeeeeccCCCCCCceEEEEEcCCCCEEE-EEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCC
Q 003871 430 CRTLLLPDNSFGGRVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS 508 (790)
Q Consensus 430 ~~~~~l~~~~h~~~V~~l~~spdg~~l~-s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 508 (790)
..... +...+..++++++++.++ +++.|++|++||..++.. +... .+...
T Consensus 52 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~---------------------~~~~---~~~~~ 102 (355)
T 3vu4_A 52 HIMSQ-----EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD---------------------VSRI---KVDAP 102 (355)
T ss_dssp EEEEE-----ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE---------------------EEEE---ECSSC
T ss_pred eeeee-----ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE---------------------EEEE---ECCCc
Confidence 22211 223588889999998885 566689999999876433 2211 25678
Q ss_pred eEEEEecCcEEEEecCCeEEEEECCCC-cEEEEEcCCCCCeEEEEEcCCC-eEEE-EeCCCcEEEEeCCCCc--------
Q 003871 509 ISCFALRGSHLFSASGGKISIFSLETF-QTLATFANPPPIATYFILLPQD-LFAF-GFDDSSILVHCPCTKK-------- 577 (790)
Q Consensus 509 V~~l~~s~~~l~s~sdg~I~vwd~~~~-~~~~~~~~~~~~v~~l~~s~~g-~l~s-gs~dg~I~iwd~~~~~-------- 577 (790)
|.+++++.+.++++.++.|++||+.++ +.+..+.. +...+++++ . .+++ |+.||.|++||+.++.
T Consensus 103 v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~ 178 (355)
T 3vu4_A 103 VKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQG 178 (355)
T ss_dssp EEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-TEEEEEESSCTTCEEEEECCC----------
T ss_pred eEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCcccccccc
Confidence 999999966677777999999999987 66665554 445566777 6 3333 7899999999999865
Q ss_pred --------eEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCc-EEEEECCCCceeeceeeeeeccC-CCCCCCCeEEEEEeC
Q 003871 578 --------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHP 647 (790)
Q Consensus 578 --------~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~-I~vwd~~~~~~~~~~~l~~~~~~-~~~~~~~v~~i~~sp 647 (790)
.+..+.+|.+.|++++|+|+|++|++|+.|++ |++||+++++ .+..+..+ |. ..|.+++|+|
T Consensus 179 ~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~-----~~~~~~~g~h~---~~v~~~~~s~ 250 (355)
T 3vu4_A 179 VQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV-----LVREFRRGLDR---ADVVDMKWST 250 (355)
T ss_dssp --------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC-----EEEEEECTTCC---SCEEEEEECT
T ss_pred ccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc-----EEEEEEcCCCC---CcEEEEEECC
Confidence 26788999999999999999999999999998 9999999854 33434434 65 7999999999
Q ss_pred CCCEEEEE-eCCcEEEEECCCCceee--eec-------------------CCCCCCCeEEEEEecCCCEEEEEEcCCeEE
Q 003871 648 DQIHLLSI-HEGQIDVYEAPTLNHTS--QLV-------------------PDKMDLPITYATYSCDGKCIYVSCKSGHVK 705 (790)
Q Consensus 648 ~~~~l~~~-~dg~I~iwd~~~~~~~~--~~~-------------------~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~ 705 (790)
++++|+++ .|+.|++||++.+.... .+. ...+......++|++||++|++++.||.++
T Consensus 251 ~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~ 330 (355)
T 3vu4_A 251 DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIE 330 (355)
T ss_dssp TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEE
T ss_pred CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEE
Confidence 99999995 89999999997653211 100 001122346799999999999999999999
Q ss_pred EEECCCC
Q 003871 706 VFDTSTL 712 (790)
Q Consensus 706 vwd~~~~ 712 (790)
+|++..+
T Consensus 331 ~~~~~~~ 337 (355)
T 3vu4_A 331 TFKVVFD 337 (355)
T ss_dssp EEEEEEE
T ss_pred EEEEEcC
Confidence 9998654
No 109
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=4e-29 Score=269.31 Aligned_cols=289 Identities=11% Similarity=0.116 Sum_probs=226.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCce
Q 003871 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSREST---SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRV 444 (790)
Q Consensus 368 ~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~d---g~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V 444 (790)
..+.+|.+.| ++++|+ |+ |+++ ++|+.||.|++||+.. .+......+ .+|...|
T Consensus 33 ~~~~~h~~~v-------~~~~~~-------~~~~~g~~l----~~~~~dg~i~iw~~~~---~~~~~~~~~--~~h~~~v 89 (368)
T 3mmy_A 33 EVTSSPDDSI-------GCLSFS-------PPTLPGNFL----IAGSWANDVRCWEVQD---SGQTIPKAQ--QMHTGPV 89 (368)
T ss_dssp ECSSCCSSCE-------EEEEEC-------CTTSSSEEE----EEEETTSEEEEEEECT---TSCEEEEEE--EECSSCE
T ss_pred EeccCCCCce-------EEEEEc-------CCCCCceEE----EEECCCCcEEEEEcCC---CCceeEEEe--ccccCCE
Confidence 7788999999 999999 88 6999 9999999999999973 233331222 3699999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEe--c--CcEEE
Q 003871 445 VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R--GSHLF 520 (790)
Q Consensus 445 ~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~--s--~~~l~ 520 (790)
.+++|+|++++|++++.||.|++||+.++.. ... .+|...|.+++| + +.+++
T Consensus 90 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---------------------~~~---~~~~~~v~~~~~~~~~~~~~l~ 145 (368)
T 3mmy_A 90 LDVCWSDDGSKVFTASCDKTAKMWDLSSNQA---------------------IQI---AQHDAPVKTIHWIKAPNYSCVM 145 (368)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------EEE---EECSSCEEEEEEEECSSCEEEE
T ss_pred EEEEECcCCCEEEEEcCCCcEEEEEcCCCCc---------------------eee---ccccCceEEEEEEeCCCCCEEE
Confidence 9999999999999999999999999876432 221 158999999999 6 77889
Q ss_pred Eec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEE--cCCCCCEEEEEEeCC
Q 003871 521 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL--KGHQNRITCLAYSLS 597 (790)
Q Consensus 521 s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l--~~h~~~v~~l~~spd 597 (790)
+++ ||.|++||+.+++.+..+..+. .+.++.+.++ .+++++.++.+.+|++......... ..+...+.++.+.++
T Consensus 146 ~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (368)
T 3mmy_A 146 TGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKD 223 (368)
T ss_dssp EEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEEC
T ss_pred EccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEccc
Confidence 988 9999999999999988888665 5566666543 7888889999999999876543322 224456677777665
Q ss_pred CCE----EEEEeCCCcEEEEECCCCceeeceeeeeeccCCCC---------CCCCeEEEEEeCCCCEEEEE-eCCcEEEE
Q 003871 598 LNV----LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP---------ETTIVNHIQFHPDQIHLLSI-HEGQIDVY 663 (790)
Q Consensus 598 g~~----l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~---------~~~~v~~i~~sp~~~~l~~~-~dg~I~iw 663 (790)
+.. +++++.|+.|++||++..... ..+. ...+|.. +...|++++|+|++++|+++ .||.|++|
T Consensus 224 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 300 (368)
T 3mmy_A 224 KQNKPTGFALGSIEGRVAIHYINPPNPA--KDNF-TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW 300 (368)
T ss_dssp TTSCEEEEEEEETTSEEEEEESSCSCHH--HHSE-EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred CCCCCCeEEEecCCCcEEEEecCCCCcc--ccce-eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence 544 999999999999999985320 1122 1122220 00269999999999999985 89999999
Q ss_pred ECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 003871 664 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 664 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~ 710 (790)
|+.+++++..+.. |...|.+++|+|+|++|++|+.|+..+.|++.
T Consensus 301 d~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 301 DKDARTKLKTSEQ--LDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp ETTTTEEEEECCC--CSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred ECCCCcEEEEecC--CCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 9999999888864 68999999999999999999998865555543
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-28 Score=273.62 Aligned_cols=307 Identities=13% Similarity=0.080 Sum_probs=226.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCC---c---ccccccccccccc-ccCCCc-------------------
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK---Q---SLEEENVNMESQL-YQPSSK------------------- 494 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~---~---~~g~~~~~~~~~i-~~~~~~------------------- 494 (790)
..++.+++|+|+|++|+++ .++.|++||+.++. . ..........++. .....+
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578899999999955554 57899999998876 2 0000000000000 000000
Q ss_pred -------e-eeeecccCCCCCCeEEEEec--CcEE-EEec-CCeEEEEECC--CCcEEEEEc--CCCCCeEEEEEcCCC-
Q 003871 495 -------L-VMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISIFSLE--TFQTLATFA--NPPPIATYFILLPQD- 557 (790)
Q Consensus 495 -------~-~~~~~~~~~~~~~V~~l~~s--~~~l-~s~s-dg~I~vwd~~--~~~~~~~~~--~~~~~v~~l~~s~~g- 557 (790)
. ........+|...|.+++|+ +++| ++++ ||.|++||+. +++.+..+. .+...|.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 0 00000011466789999999 7775 7887 8999999999 888888876 567889999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCceEE----EEcCCCCCEEEEEEeCC---CCEEEEEeCCCcEEEEECCCCceeeceeeeeec
Q 003871 558 LFAFGFDDSSILVHCPCTKKTKA----KLKGHQNRITCLAYSLS---LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630 (790)
Q Consensus 558 ~l~sgs~dg~I~iwd~~~~~~~~----~l~~h~~~v~~l~~spd---g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~ 630 (790)
+|++|+.+|.|++|++.+++... .+.+|...|++++|+|+ +++|++|+.|++|++||+++++ .+..+.
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~-----~~~~~~ 237 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF-----IVDKWL 237 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT-----CEEEEC
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc-----eeeeee
Confidence 99999999999999998876543 67789999999999999 9999999999999999999854 233334
Q ss_pred cCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCC-----------------------CCCCCeEEE
Q 003871 631 TGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPD-----------------------KMDLPITYA 686 (790)
Q Consensus 631 ~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~-----------------------~h~~~v~~l 686 (790)
.+|. ..|.+++|+ ++++|+++ .|+.|++||+.+++++..+... .....|.++
T Consensus 238 ~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 238 FGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp CCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred cCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 5666 799999999 99999995 8999999999999988777521 124579999
Q ss_pred EEecCCCEEEEEE-cCCeEEEEEC--CCC---eEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeC------C
Q 003871 687 TYSCDGKCIYVSC-KSGHVKVFDT--STL---ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT------N 754 (790)
Q Consensus 687 ~~s~dg~~l~sgs-~dg~i~vwd~--~~~---~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~------D 754 (790)
+|+|++++|++++ .|+.|++|++ .++ +.+..+. +| ..+. +++|+| ++.++++++. +
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~-------~~--~~v~--~~~~~~-~~~~v~~~~~~~~~~~~ 381 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT-------FP--YNVI--SLSAHN-DEFQVTLDNKESSGVQK 381 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE-------CS--SCEE--EEEEET-TEEEEEECCTTCCSSCC
T ss_pred EEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec-------cC--CceE--EEEecC-CcEEEEEecccCCCCCC
Confidence 9999999999999 8999999999 555 5555554 33 3455 999999 5544444343 4
Q ss_pred CcEEEEecCCCcccc
Q 003871 755 GRVHVIEPLESEVEW 769 (790)
Q Consensus 755 g~i~iW~~~~~~~~w 769 (790)
..|.+|.+......|
T Consensus 382 ~~i~v~~~~~~~~~~ 396 (450)
T 2vdu_B 382 NFAKFIEYNLNENSF 396 (450)
T ss_dssp CSEEEEEEETTTTEE
T ss_pred cceEEEEEEcCCCeE
Confidence 568999876544344
No 111
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=4.2e-28 Score=268.44 Aligned_cols=303 Identities=15% Similarity=0.093 Sum_probs=238.1
Q ss_pred eeccCCCceEeeeccccCCCC---ceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccccccc
Q 003871 408 VCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 484 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~~~~---~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~ 484 (790)
++++.++.+.+|.++. ..+ ....+. +...+.+++|+|++.++++++.++.|++||+.++..
T Consensus 93 ~~~~~~~~~~l~~~d~--~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~--------- 156 (433)
T 3bws_A 93 IRKPEELNEKLIALDK--EGITHRFISRFK-----TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQT--------- 156 (433)
T ss_dssp ESSGGGGTTCEEECCB--TTCSEEEEEEEE-----CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCE---------
T ss_pred ecccCCCceEEEEECC--CCCcceEEEEEc-----CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeE---------
Confidence 3566677667776642 112 222222 234567999999777777777789999999876543
Q ss_pred ccccccCCCceeeeec---ccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-
Q 003871 485 ESQLYQPSSKLVMTND---IAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD- 557 (790)
Q Consensus 485 ~~~i~~~~~~~~~~~~---~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g- 557 (790)
.... ...+|...|.+++|+ +.++++++ |+.|++||+.+++.+..+..|...+.+++|+|++
T Consensus 157 ------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (433)
T 3bws_A 157 ------------VRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRD 224 (433)
T ss_dssp ------------EEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTT
T ss_pred ------------eeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCC
Confidence 1100 112688899999998 77888888 8999999999999999998889999999999999
Q ss_pred eE-EEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEe--------CCCcEEEEECCCCceeeceeeee
Q 003871 558 LF-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG--------ADAQLCVWDAVGWKKLCSKFLHS 628 (790)
Q Consensus 558 ~l-~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s--------~dg~I~vwd~~~~~~~~~~~l~~ 628 (790)
.+ ++++.|+.|++||+.+++.+..+..+ ..+.+++|+|+++++++++ .|+.|++||+.+++....
T Consensus 225 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~----- 298 (433)
T 3bws_A 225 LVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT----- 298 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-----
T ss_pred EEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-----
Confidence 66 56668999999999999888887754 4599999999999999888 588999999998653322
Q ss_pred eccCCCCCCCCeEEEEEeCCCCEEEE-E-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc------
Q 003871 629 FQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK------ 700 (790)
Q Consensus 629 ~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~------ 700 (790)
+ .+. ..+.+++|+|+++.+++ + .++.|++||+.+++.+..+. +...+.+++|+|+|+++++++.
T Consensus 299 ~--~~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 370 (433)
T 3bws_A 299 I--GPP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPT 370 (433)
T ss_dssp E--EEE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTT
T ss_pred c--cCC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccc
Confidence 1 111 46889999999987655 4 78999999999998887775 3678999999999999998876
Q ss_pred ---------CCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeC-CCcEEEEecCC
Q 003871 701 ---------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-NGRVHVIEPLE 764 (790)
Q Consensus 701 ---------dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~-Dg~i~iW~~~~ 764 (790)
||.|++||+.+++.+..+.. ...+. +++|+| ++++|++++. |+.|++|++..
T Consensus 371 ~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---------~~~~~--~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 371 EGYLKKGLVLGKVYVIDTTTDTVKEFWEA---------GNQPT--GLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TCTTSCCSSCCEEEEEETTTTEEEEEEEC---------SSSEE--EEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred cccccccccceEEEEEECCCCcEEEEecC---------CCCCc--eEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 57999999999998887752 22344 999999 8999988775 99999999863
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.9e-29 Score=267.83 Aligned_cols=277 Identities=9% Similarity=0.009 Sum_probs=212.9
Q ss_pred CCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccc
Q 003871 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 477 (790)
Q Consensus 398 ~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~ 477 (790)
+|+..+ ++|+.||+|++||+.. ......+. ...|.++.|+|+ +++++.|+++++|+...
T Consensus 46 ~d~~~l----~sg~~Dg~v~iwd~~~---~~~~~~~~------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~----- 104 (343)
T 3lrv_A 46 YDKWVC----MCRCEDGALHFTQLKD---SKTITTIT------TPNPRTGGEHPA---IISRGPCNRLLLLYPGN----- 104 (343)
T ss_dssp EEEEEE----EEEEETTEEEEEEESS---SSCEEEEE------EECCCTTCCCCS---EEEECSTTEEEEEETTT-----
T ss_pred CCCCEE----EEECCCCcEEEEECCC---CcEEEEEe------cCCceeeeeCCc---eEEecCCCeEEEEEccC-----
Confidence 778889 9999999999999974 22333322 456778888888 99999999999998653
Q ss_pred cccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEc-CCCCCeEEEEEcC-
Q 003871 478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLP- 555 (790)
Q Consensus 478 g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~s~- 555 (790)
.+.+|+..+++.+..+. +|...|.+++|+|
T Consensus 105 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 136 (343)
T 3lrv_A 105 ------------------------------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNE 136 (343)
T ss_dssp ------------------------------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC-
T ss_pred ------------------------------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCC
Confidence 45588888888776665 6778899999999
Q ss_pred -CC-eEEEEeCCCcEEEEeCCCCceEEEEcC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccC
Q 003871 556 -QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 632 (790)
Q Consensus 556 -~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~-h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~ 632 (790)
++ ++++|+.||+|++||+++++....... |...|++++|+|+|+++++|+.|+.|++||+++++.. ...+..+
T Consensus 137 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~----~~~~~~~ 212 (343)
T 3lrv_A 137 VNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA----SSRFPVD 212 (343)
T ss_dssp --CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC----CEECCCC
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC----ccEEecc
Confidence 99 999999999999999999988776644 5568999999999999999999999999999986532 1223333
Q ss_pred CCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCC-CCCCCe--EEEEEecCCCEEEEEEc-CCeEEEEE
Q 003871 633 LVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD-KMDLPI--TYATYSCDGKCIYVSCK-SGHVKVFD 708 (790)
Q Consensus 633 ~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~-~h~~~v--~~l~~s~dg~~l~sgs~-dg~i~vwd 708 (790)
|. ++|++++|+|++.+|+++.++.|++||+++++.+..+... .|...+ .+++|+|+|++|++++. |+.|++|+
T Consensus 213 h~---~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 213 EE---AKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp TT---SCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CC---CCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEE
Confidence 66 7999999999999999976779999999998776555321 122333 46999999999999998 99999999
Q ss_pred CCCCeEEEEeccccccCCCCcccccceEEEEEec--CCCCEEEEEeCCCcEEEEecCC
Q 003871 709 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHP--LEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp--~d~~~las~s~Dg~i~iW~~~~ 764 (790)
+.++...... .++. .++|+| .+...+++++.||.++++-...
T Consensus 290 ~~~~~~~~~~------------~~~~--~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 290 FDKKTKNWTK------------DEES--ALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp ECTTTCSEEE------------EEEE--ECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EcccccceEe------------cCce--eEecCccccccceeEEEecCCceEEEEecC
Confidence 9766433221 1222 555555 2456788888888888876443
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.5e-28 Score=262.67 Aligned_cols=286 Identities=10% Similarity=0.034 Sum_probs=209.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
+|...|.+++|+|||++|++|+.++ +++|+..+... .... +...+..+++. +
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~--------------------~~~~-----~~~~~~~~~~~~~~ 70 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH--------------------IMSQ-----EMRHLSKVRMLHRT 70 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE--------------------EEEE-----ECSCCCEEEECTTS
T ss_pred cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce--------------------eeee-----ecCCeEEEEEcCCC
Confidence 6899999999999999998888765 78999765322 1110 11235566666 5
Q ss_pred cEE-EEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCC-ceEEEEcCCCCCEEEEE
Q 003871 517 SHL-FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLA 593 (790)
Q Consensus 517 ~~l-~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~v~~l~ 593 (790)
+.+ ++++ |++|++||..+++.+..+. +...|.+++++++. ++++ .|+.|++||+.++ +.+..+.. +...++
T Consensus 71 ~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~-~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~ 144 (355)
T 3vu4_A 71 NYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF-IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCE 144 (355)
T ss_dssp SEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEE
T ss_pred CEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-EEEE-EcCEEEEEECCCCceeeEEecc---CCceEE
Confidence 665 4455 7899999999999999887 66689999999875 3333 3789999999988 66655544 445566
Q ss_pred EeCCCCEEEE--EeCCCcEEEEECCCCceee----------cee-eeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCc
Q 003871 594 YSLSLNVLVS--SGADAQLCVWDAVGWKKLC----------SKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ 659 (790)
Q Consensus 594 ~spdg~~l~s--~s~dg~I~vwd~~~~~~~~----------~~~-l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~ 659 (790)
+++ .++++ |+.||.|++||+.++.... ..+ +. ...+|. +.|++++|+|+|++|+++ .|++
T Consensus 145 ~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~-~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~ 218 (355)
T 3vu4_A 145 FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGV-LIKAHT---NPIKMVRLNRKSDMVATCSQDGT 218 (355)
T ss_dssp EET--TEEEEEESSCTTCEEEEECCC------------------CCE-EECCCS---SCEEEEEECTTSSEEEEEETTCS
T ss_pred EEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccE-EEEccC---CceEEEEECCCCCEEEEEeCCCC
Confidence 777 56666 5889999999999754110 011 33 345666 799999999999999995 8998
Q ss_pred -EEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE--EEeccc---cc----------
Q 003871 660 -IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR--CQINLT---AY---------- 723 (790)
Q Consensus 660 -I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~--~~~~~~---~~---------- 723 (790)
|++||+++++++..+....|...|.+++|+|+|++|++++.|++|++||+..+... ..+... .+
T Consensus 219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
T 3vu4_A 219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF 298 (355)
T ss_dssp EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence 99999999999999874337899999999999999999999999999999865321 111100 00
Q ss_pred -cCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 724 -AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 724 -~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
.+.+. ..... .++|+| +++++++++.||.+++|++..++
T Consensus 299 ~~~~~~-~~~~~--~~a~~~-d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 299 KLSVDK-HVRGC--KIAWIS-ESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp ECCCCT-TCCCC--EEEESS-SSEEEEEETTTTEEEEEEEEEET
T ss_pred EeccCC-CCCce--EEEEeC-CCCEEEEEeCCCeEEEEEEEcCC
Confidence 01111 11224 789999 89999999999999999987654
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=5.6e-27 Score=255.62 Aligned_cols=311 Identities=11% Similarity=0.070 Sum_probs=232.8
Q ss_pred ceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEE-EEEeCCCcEEEEecCCCCccccccccccc
Q 003871 407 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVNME 485 (790)
Q Consensus 407 ~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l-~s~~~dg~i~vw~~~~~~~~~g~~~~~~~ 485 (790)
+++++.|+.|++||+.. +.+.... . +...+.+++|+|+|+++ ++++.|+.|++||+.++..
T Consensus 5 ~vs~~~d~~v~v~d~~~----~~~~~~~-~---~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~---------- 66 (391)
T 1l0q_A 5 YIANSESDNISVIDVTS----NKVTATI-P---VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---------- 66 (391)
T ss_dssp EEEETTTTEEEEEETTT----TEEEEEE-E---CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE----------
T ss_pred EEEcCCCCEEEEEECCC----CeEEEEe-e---cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE----------
Confidence 48999999999999973 4443322 1 23568999999999987 4555799999999876432
Q ss_pred cccccCCCceeeeecccCCCCCCeEEEEec--CcEEEE-ec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eE-
Q 003871 486 SQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS-AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF- 559 (790)
Q Consensus 486 ~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s-~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l- 559 (790)
.... .+...+.+++|+ ++++++ ++ ++.|++||+.+++.+..+..+ ..+.+++|+|++ .+
T Consensus 67 -----------~~~~---~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 131 (391)
T 1l0q_A 67 -----------IATV---PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY 131 (391)
T ss_dssp -----------EEEE---ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred -----------EEEE---ECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence 2211 133489999999 777654 44 699999999999988887754 468999999999 55
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCC
Q 003871 560 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 638 (790)
Q Consensus 560 ~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l-~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~ 638 (790)
++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++++ ++++.|+.|++||+++++.. ..+. .+ .
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-----~~~~-~~----~ 200 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----DTVK-VE----A 200 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEE-CS----S
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE-----EEEe-cC----C
Confidence 78888999999999999988888765 457999999999887 67788999999999986432 2122 22 4
Q ss_pred CeEEEEEeCCCCEEEEE----eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEE-EEEEcCCeEEEEECCCCe
Q 003871 639 IVNHIQFHPDQIHLLSI----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI-YVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 639 ~v~~i~~sp~~~~l~~~----~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~dg~i~vwd~~~~~ 713 (790)
.+.+++|+|++++++++ .++.|++||+.+++.+..+.. ...+.+++|+|+|+++ ++++.|+.|++||+.+++
T Consensus 201 ~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec---CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 78999999999998884 478999999999998888764 3458999999999988 566889999999999999
Q ss_pred EEEEeccccc----------cCCCCcccccceEEEEEecCC-----C--CEEEEEeCCCcEEEEecCCCcc
Q 003871 714 LRCQINLTAY----------AQPGTISLELYPLVIAAHPLE-----P--NRIALGLTNGRVHVIEPLESEV 767 (790)
Q Consensus 714 ~~~~~~~~~~----------~~~gh~~~~v~~~~v~~sp~d-----~--~~las~s~Dg~i~iW~~~~~~~ 767 (790)
.+..+..+.. .+.++ ..........+.. . -.+...+.|..+++|++.+|..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 278 ITATMAVGKNPYASGQFIGSIPVQP---VYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp EEEEEECSSSEECCSSCEEECSSCC---CCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred EEEEEECCcCCCccceeeecccccc---cccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 8887754311 01010 0110012222211 1 3466667789999999987763
No 115
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=3.6e-28 Score=250.12 Aligned_cols=263 Identities=12% Similarity=0.050 Sum_probs=201.3
Q ss_pred CCCcceeeeccCCCc---ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEe
Q 003871 342 NNETISLKDFPTVSN---LRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVN 418 (790)
Q Consensus 342 ~d~~i~l~iwd~~~g---~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~i 418 (790)
.+.+|+ +|+..++ +++ +++.+|..+| ..++|+ ||-.-| +... +
T Consensus 61 ~~~~v~--lw~~~~~~~~~~~--------~~~~~~~~~v-------~~~~~~-------~~~~~~----~~~~------~ 106 (356)
T 2w18_A 61 CEDVVS--LWKALDAWQWEKL--------YTWHFAEVPV-------LQIVPV-------PDVYNL----VCVA------L 106 (356)
T ss_dssp ESSEEE--EEEESSSSBEEEE--------EEEECCSSCE-------EEECCC-------TTCCSC----EEEE------E
T ss_pred ccceEE--EcccCCCccceee--------EEEeccCcee-------EEEEEc-------Ccccce----eeee------e
Confidence 367788 9999998 666 8899999999 899998 886655 2211 0
Q ss_pred eeccccCCCCceeeeeccCCCCCCceEEEEEcCC----CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCc
Q 003871 419 LKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK 494 (790)
Q Consensus 419 wd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spd----g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~ 494 (790)
+ +-|...|.+++|+|| ++++++++.+ +.+|++.+
T Consensus 107 ---------~---------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~---------------------- 144 (356)
T 2w18_A 107 ---------G---------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTK---------------------- 144 (356)
T ss_dssp ---------C---------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEETT----------------------
T ss_pred ---------c---------cccccceEEEEECCCccccccEEEeCCCe--EEEEecCC----------------------
Confidence 0 124678999999999 9999998844 77787543
Q ss_pred eeeeecccCCCCCCeEEEEecCcEEEEec---CCeEEEEEC-CCCcEEEEEcCCCCCeEEEEEcC---CC-eEEEEeCCC
Q 003871 495 LVMTNDIAADPKDSISCFALRGSHLFSAS---GGKISIFSL-ETFQTLATFANPPPIATYFILLP---QD-LFAFGFDDS 566 (790)
Q Consensus 495 ~~~~~~~~~~~~~~V~~l~~s~~~l~s~s---dg~I~vwd~-~~~~~~~~~~~~~~~v~~l~~s~---~g-~l~sgs~dg 566 (790)
++++.++. |+.|++|++ .+|+.+..+..|...++.++|+| ++ .|++|+.|+
T Consensus 145 ---------------------g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~ 203 (356)
T 2w18_A 145 ---------------------RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMN 203 (356)
T ss_dssp ---------------------TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTS
T ss_pred ---------------------CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCC
Confidence 12344432 899999999 55888899889999999999999 66 999999999
Q ss_pred cEEEEeCCCCceEEEEcCCC---CCEEEEEEeCCCCEE------------EEEeCCCcEEEEECCCCceeeceeeeeecc
Q 003871 567 SILVHCPCTKKTKAKLKGHQ---NRITCLAYSLSLNVL------------VSSGADAQLCVWDAVGWKKLCSKFLHSFQT 631 (790)
Q Consensus 567 ~I~iwd~~~~~~~~~l~~h~---~~v~~l~~spdg~~l------------~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~ 631 (790)
+|++||+.+|++++.+.+|. ..+.+++|+|+|+++ ++|+.|++|++||..+++......+. ++.
T Consensus 204 TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~-~p~ 282 (356)
T 2w18_A 204 NIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC-LPP 282 (356)
T ss_dssp EEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC-CCT
T ss_pred cEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee-ccC
Confidence 99999999999999998754 467788999999876 56888999999999997654322222 345
Q ss_pred CCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCC-eEEEEEecCCCEEEEEEcCCeEEEEEC
Q 003871 632 GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLP-ITYATYSCDGKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 632 ~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sgs~dg~i~vwd~ 709 (790)
+|. ..+.+..++ +.+++++ .|++|+|||+.+++++.++.+ |... +..++|+|||++|++|+.|++|+|||+
T Consensus 283 Gh~---~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~g--H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 283 GQA---GRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPP--VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TCC---CCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECC--C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCc---ceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecC--CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 665 344444444 7788885 799999999999999999864 4444 556899999999999999999999995
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=7.8e-28 Score=266.12 Aligned_cols=243 Identities=15% Similarity=0.162 Sum_probs=201.1
Q ss_pred CCCCCeEEEEec---CcEEEEec-CCeEEEEECCC----------CcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCc
Q 003871 504 DPKDSISCFALR---GSHLFSAS-GGKISIFSLET----------FQTLATFANPPPIATYFILLPQD--LFAFGFDDSS 567 (790)
Q Consensus 504 ~~~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~~----------~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~ 567 (790)
.|.+.|++++|+ +.++++++ +|.|++|++.+ .+....+.+|...|.+++|+|++ .|++|+.||.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 589999999999 35788888 89999999986 57778888999999999999998 8999999999
Q ss_pred EEEEeCCCCce-------EEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCC
Q 003871 568 ILVHCPCTKKT-------KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 639 (790)
Q Consensus 568 I~iwd~~~~~~-------~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~ 639 (790)
|++||+.++.. ...+.+|...|.+++|+| ++.++++++.|+.|++||++++.. ...+..+ ..|. ..
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--~~~~~~~-~~~~---~~ 279 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--SKPSHTV-DAHT---AE 279 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--SSCSEEE-ECCS---SC
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--CcceeEe-ecCC---CC
Confidence 99999987421 456778999999999999 788999999999999999997531 1223322 2455 68
Q ss_pred eEEEEEeCCCC-EEEEE-eCCcEEEEECCC-CceeeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCC---
Q 003871 640 VNHIQFHPDQI-HLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTL--- 712 (790)
Q Consensus 640 v~~i~~sp~~~-~l~~~-~dg~I~iwd~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~dg~i~vwd~~~~--- 712 (790)
|++++|+|++. +++++ .||.|++||+++ +.++..+.. |...|.+++|+|+++ +|++++.||.|++||+...
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 99999999997 56664 899999999997 456777754 689999999999985 6899999999999999872
Q ss_pred -----------eEEEEeccccccCCCCcccccceEEEEEecCCCC-EEEEEeCCCcEEEEecCCC
Q 003871 713 -----------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 713 -----------~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~las~s~Dg~i~iW~~~~~ 765 (790)
+++..+. || ...|+ +++|+| +++ +|++++.||.|+||++...
T Consensus 358 ~~~~~~~~~~~~~~~~~~-------~h-~~~v~--~~~~~p-~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHG-------GH-TAKIS--DFSWNP-NEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCHHHHHHCCTTEEEECC-------CC-SSCEE--EEEECS-SSTTEEEEEETTSEEEEEEECHH
T ss_pred cCccccccCCcceEEEcC-------CC-CCCce--EEEECC-CCCCEEEEEECCCCEEEeEcccc
Confidence 3344432 44 44566 999999 777 9999999999999999754
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.7e-28 Score=289.01 Aligned_cols=249 Identities=12% Similarity=0.080 Sum_probs=207.0
Q ss_pred CCCCCCeEEEEec--CcEEEEec-CCeEEEEECC--CCcEEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCC
Q 003871 503 ADPKDSISCFALR--GSHLFSAS-GGKISIFSLE--TFQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPC 574 (790)
Q Consensus 503 ~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~--~~~~~~~~~~~~~~v~~l~~s~~--g-~l~sgs~dg~I~iwd~~ 574 (790)
.+|.++|++++|+ ++++++|+ ||.|++||+. +++....+.+|...|++++|+|+ + .+++|+.||.|++||+.
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC
Confidence 3799999999999 88899998 9999999998 56778888999999999999988 8 99999999999999999
Q ss_pred CCc--eEEEEcCCCCCEEEEEEeCC--CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeC---
Q 003871 575 TKK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--- 647 (790)
Q Consensus 575 ~~~--~~~~l~~h~~~v~~l~~spd--g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp--- 647 (790)
+++ .+..+.+|...|++++|+|+ ++.+++|+.||.|++||++++...... ...+|. ..|.+++|+|
T Consensus 86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~----~~~~~~---~~v~~l~~~p~~~ 158 (753)
T 3jro_A 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI----IIDAHA---IGVNSASWAPATI 158 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE----EEECCS---SCEEEEEECCCC-
T ss_pred CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee----EeecCC---CceEEEEecCccc
Confidence 886 67788889999999999999 999999999999999999986432222 223455 6899999999
Q ss_pred ----------CCCEEEEE-eCCcEEEEECCCCc----eeeeecCCCCCCCeEEEEEecC---CCEEEEEEcCCeEEEEEC
Q 003871 648 ----------DQIHLLSI-HEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCD---GKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 648 ----------~~~~l~~~-~dg~I~iwd~~~~~----~~~~~~~~~h~~~v~~l~~s~d---g~~l~sgs~dg~i~vwd~ 709 (790)
++.+++++ .||.|++||++++. ....+. .|...|++++|+|+ ++++++|+.||.|++||+
T Consensus 159 ~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp --------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred ccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 58888885 89999999998773 444554 47899999999999 999999999999999999
Q ss_pred CCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 710 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 710 ~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
.+++....... ....+| ...|+ +++|+| ++.++++|+.||.|++|++.++.
T Consensus 237 ~~~~~~~~~~~--~~~~~~-~~~v~--~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 237 DNEQGPWKKTL--LKEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSSSCCBCCB--SSSSCC-SSCCC--CEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCCcceeEE--eccCCC-CCceE--EEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 98743211111 111123 55677 999999 89999999999999999998654
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=4.8e-27 Score=259.91 Aligned_cols=301 Identities=13% Similarity=0.034 Sum_probs=234.6
Q ss_pred CCCcceeeeccCCCc--ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEee
Q 003871 342 NNETISLKDFPTVSN--LRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNL 419 (790)
Q Consensus 342 ~d~~i~l~iwd~~~g--~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iw 419 (790)
.++.+.||.||..++ +.+ ..+..+. .+ .+++|+ |+++.+ ++++.|+.|++|
T Consensus 97 ~~~~~~l~~~d~~~~~~~~~--------~~~~~~~-~~-------~~~~~s-------~~~~~~----~~~~~~~~i~~~ 149 (433)
T 3bws_A 97 EELNEKLIALDKEGITHRFI--------SRFKTGF-QP-------KSVRFI-------DNTRLA----IPLLEDEGMDVL 149 (433)
T ss_dssp GGGTTCEEECCBTTCSEEEE--------EEEECSS-CB-------CCCEES-------SSSEEE----EEBTTSSSEEEE
T ss_pred CCCceEEEEECCCCCcceEE--------EEEcCCC-Cc-------eEEEEe-------CCCeEE----EEeCCCCeEEEE
Confidence 355567668887655 333 4444443 34 689998 877778 999999999999
Q ss_pred eccccCCCCceeeeecc--CCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceee
Q 003871 420 KLQLINEPSECRTLLLP--DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVM 497 (790)
Q Consensus 420 d~~~~~~~~~~~~~~l~--~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~ 497 (790)
|+.. +........ ..+|...|.+++|+|+|+.+++++.|+.|++||+.++.. .
T Consensus 150 d~~~----g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~---------------------~ 204 (433)
T 3bws_A 150 DINS----GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY---------------------K 204 (433)
T ss_dssp ETTT----CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE---------------------E
T ss_pred ECCC----CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE---------------------E
Confidence 9973 444332110 136889999999999999999999999999999876432 1
Q ss_pred eecccCCCCCCeEEEEec--CcEE-EEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEe--------C
Q 003871 498 TNDIAADPKDSISCFALR--GSHL-FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF--------D 564 (790)
Q Consensus 498 ~~~~~~~~~~~V~~l~~s--~~~l-~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs--------~ 564 (790)
... ..|...+.+++|+ ++.+ ++++ ++.|++||+.+++.+..+..+ ..+.+++|+|+| .+++++ .
T Consensus 205 ~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 205 ATV--DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp EEE--ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred EEE--cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccC
Confidence 111 1578899999999 6666 4554 899999999999988887654 458999999999 888877 5
Q ss_pred CCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEE
Q 003871 565 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 643 (790)
Q Consensus 565 dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l-~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i 643 (790)
||.|++||+.+++.+..+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+++.. ..+. +. ..+.++
T Consensus 282 dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~-----~~~~--~~---~~~~~~ 350 (433)
T 3bws_A 282 GGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ-----KSIP--VF---DKPNTI 350 (433)
T ss_dssp CEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE-----EEEE--CS---SSEEEE
T ss_pred CCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE-----EEec--CC---CCCCeE
Confidence 889999999998877665 356689999999999754 66689999999999986532 2222 22 578999
Q ss_pred EEeCCCCEEEEE-e---------------CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc-CCeEEE
Q 003871 644 QFHPDQIHLLSI-H---------------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKV 706 (790)
Q Consensus 644 ~~sp~~~~l~~~-~---------------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-dg~i~v 706 (790)
+|+|++++++++ . ||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. |+.|++
T Consensus 351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---GNQPTGLDVSPDNRYLVISDFLDHQIRV 427 (433)
T ss_dssp EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---CCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence 999999988885 3 46999999999998888864 567999999999999998875 999999
Q ss_pred EECCC
Q 003871 707 FDTST 711 (790)
Q Consensus 707 wd~~~ 711 (790)
|+++.
T Consensus 428 ~~~~~ 432 (433)
T 3bws_A 428 YRRDG 432 (433)
T ss_dssp EEETT
T ss_pred EEecC
Confidence 99864
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.8e-27 Score=243.51 Aligned_cols=269 Identities=12% Similarity=0.037 Sum_probs=193.4
Q ss_pred eeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccc
Q 003871 408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQ 487 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~ 487 (790)
++++. ..|++|+..+.-.....+.+. +|+.+|..+.+.||..-|+...-.+
T Consensus 58 ~~~~~-~~v~lw~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~------------------------ 108 (356)
T 2w18_A 58 ITACE-DVVSLWKALDAWQWEKLYTWH----FAEVPVLQIVPVPDVYNLVCVALGN------------------------ 108 (356)
T ss_dssp EEEES-SEEEEEEESSSSBEEEEEEEE----CCSSCEEEECCCTTCCSCEEEEECS------------------------
T ss_pred EEecc-ceEEEcccCCCccceeeEEEe----ccCceeEEEEEcCcccceeeeeecc------------------------
Confidence 67766 899999998522124455554 6899999999999876555543311
Q ss_pred cccCCCceeeeecccCCCCCCeEEEEec-C-----cEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEE
Q 003871 488 LYQPSSKLVMTNDIAADPKDSISCFALR-G-----SHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA 560 (790)
Q Consensus 488 i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~-----~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~ 560 (790)
-+...|.+++++ + +.+++++ ..+++|++ +++ .+.
T Consensus 109 ----------------~~~~~v~sla~spd~~~~~~~l~s~g-~~~~v~~l----------------------~~g~lv~ 149 (356)
T 2w18_A 109 ----------------LEIREIRALFCSSDDESEKQVLLKSG-NIKAVLGL----------------------TKRRLVS 149 (356)
T ss_dssp ----------------SSEEEEEEECC------CCEEEEEEE-EEEEEEEE----------------------TTTEEEE
T ss_pred ----------------ccccceEEEEECCCccccccEEEeCC-CeEEEEec----------------------CCCcEEE
Confidence 144566777777 3 3455544 33556643 344 333
Q ss_pred EEe--CCCcEEEEeC-CCCceEEEEcCCCCCEEEEEEeC---CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCC
Q 003871 561 FGF--DDSSILVHCP-CTKKTKAKLKGHQNRITCLAYSL---SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 634 (790)
Q Consensus 561 sgs--~dg~I~iwd~-~~~~~~~~l~~h~~~v~~l~~sp---dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~ 634 (790)
+++ .|+.|++|++ .+|+.+..+.+|...++.++|+| ++..||+|+.|++|++||+++|+. +.++..++.
T Consensus 150 ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~-----l~tL~g~~~ 224 (356)
T 2w18_A 150 SSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL-----LKKMHIDDS 224 (356)
T ss_dssp EESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE-----EEEEECCC-
T ss_pred ecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE-----EEEEcCCCc
Confidence 322 4778888887 44777777888999999999999 779999999999999999999653 333332221
Q ss_pred CCCCCeEEEEEeCCCCEEE------------EE-eCCcEEEEECCCCceeeeec---CCCCCCCeEEEEEecCCCEEEEE
Q 003871 635 PETTIVNHIQFHPDQIHLL------------SI-HEGQIDVYEAPTLNHTSQLV---PDKMDLPITYATYSCDGKCIYVS 698 (790)
Q Consensus 635 ~~~~~v~~i~~sp~~~~l~------------~~-~dg~I~iwd~~~~~~~~~~~---~~~h~~~v~~l~~s~dg~~l~sg 698 (790)
+...+.+++|+|+|.+++ +| .|++|++||..+++.+..+. +.+|...+.+..++ +.++++|
T Consensus 225 -~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASg 301 (356)
T 2w18_A 225 -YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAI 301 (356)
T ss_dssp ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEE
T ss_pred -ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEE
Confidence 114688889999998874 33 68899999999998876652 23455555544444 8899999
Q ss_pred EcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEec
Q 003871 699 CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 699 s~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
+.|++|+|||+.+|+.+..+. ||+...+. .++|+| ||++|++|+.|++|+|||+
T Consensus 302 S~DgTIkIWDl~tGk~l~tL~-------gH~~~vvs--~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 302 LTSGTIAIWDLLLGQCTALLP-------PVSDQHWS--FVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ETTSCEEEEETTTCSEEEEEC-------CC--CCCC--EEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred cCCCcEEEEECCCCcEEEEec-------CCCCCeEE--EEEECC-CCCEEEEEECCCcEEEecC
Confidence 999999999999999999987 56554444 689999 8999999999999999996
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-27 Score=264.68 Aligned_cols=251 Identities=12% Similarity=0.055 Sum_probs=193.8
Q ss_pred CCCCceEEEEEcCCCCEE-EEEeCCCcEEEEecC--CCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec
Q 003871 439 SFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQ--SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 515 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l-~s~~~dg~i~vw~~~--~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s 515 (790)
+|.+.|.+++|+|+|++| ++++.||.|++|++. ++.. ........+...|.+++|+
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~---------------------~~~~~~~~~~~~v~~~~~s 158 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV---------------------LKLRKRFCFSKRPNAISIA 158 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC---------------------EEEEEEEECSSCEEEEEEC
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce---------------------eeeeecccCCCCceEEEEc
Confidence 355689999999999996 788889999999987 4322 1111111467899999999
Q ss_pred --CcEEEEec-CCeEEEEECCCCcEEE----EEcCCCCCeEEEEEcCC---C-eEEEEeCCCcEEEEeCCCCceEEE-Ec
Q 003871 516 --GSHLFSAS-GGKISIFSLETFQTLA----TFANPPPIATYFILLPQ---D-LFAFGFDDSSILVHCPCTKKTKAK-LK 583 (790)
Q Consensus 516 --~~~l~s~s-dg~I~vwd~~~~~~~~----~~~~~~~~v~~l~~s~~---g-~l~sgs~dg~I~iwd~~~~~~~~~-l~ 583 (790)
+++|++++ +|.|++|++.+++... .+.+|...|++++|+|+ + +|++|+.|+.|++||+.+++.+.. +.
T Consensus 159 p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 238 (450)
T 2vdu_B 159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF 238 (450)
T ss_dssp TTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC
T ss_pred CCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec
Confidence 88999998 8999999998876544 67789999999999999 8 999999999999999999988877 56
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeecc-----CC-----------CCCCCCeEEEEEeC
Q 003871 584 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-----GL-----------VPETTIVNHIQFHP 647 (790)
Q Consensus 584 ~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~-----~~-----------~~~~~~v~~i~~sp 647 (790)
+|...|.+++|+ ++++|++|+.|++|++||+++++............ .| ......|.+++|+|
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 899999999999 99999999999999999999976543222110000 00 00114789999999
Q ss_pred CCCEEEEE--eCCcEEEEEC--CCC---ceeeeecCCCCCCCeEEEEEecCCCEEEEEEc------CCeEEEEECC--CC
Q 003871 648 DQIHLLSI--HEGQIDVYEA--PTL---NHTSQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTS--TL 712 (790)
Q Consensus 648 ~~~~l~~~--~dg~I~iwd~--~~~---~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~------dg~i~vwd~~--~~ 712 (790)
++++++++ .++.|++||+ .++ +.+..+.. | ..|.+++|+|++.++++++. +..|.+|.+. ++
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~--~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~ 394 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF--P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNEN 394 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC--S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTT
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc--C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCC
Confidence 99999984 6899999999 555 56666654 3 78999999996544444443 4457777654 44
Q ss_pred eE
Q 003871 713 EL 714 (790)
Q Consensus 713 ~~ 714 (790)
+.
T Consensus 395 ~~ 396 (450)
T 2vdu_B 395 SF 396 (450)
T ss_dssp EE
T ss_pred eE
Confidence 43
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=8.6e-28 Score=262.34 Aligned_cols=299 Identities=9% Similarity=0.032 Sum_probs=194.4
Q ss_pred CceEEEEE---cCCCCEEEEEeCCCcEEEEecCCCCcccccccccccc-----------ccccCCCceeeeecccCCCCC
Q 003871 442 GRVVRLIY---SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES-----------QLYQPSSKLVMTNDIAADPKD 507 (790)
Q Consensus 442 ~~V~~l~~---spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~-----------~i~~~~~~~~~~~~~~~~~~~ 507 (790)
....++.| +|++..+++++.++.|.+|+................. ..|....... ...|..
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 90 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYS-----ENLHDG 90 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEE-----CC----
T ss_pred CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCcccc-----ccccCC
Confidence 44556666 4555556777778889999875433210000000000 1111111100 012334
Q ss_pred CeEEEEec--CcEEEEec-CCeEEEEECCCCcEEE-----EEcCCCCCeEEEEEcC--------CC-eEEEEeCCCcEEE
Q 003871 508 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLA-----TFANPPPIATYFILLP--------QD-LFAFGFDDSSILV 570 (790)
Q Consensus 508 ~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~-----~~~~~~~~v~~l~~s~--------~g-~l~sgs~dg~I~i 570 (790)
.+....+. +.++++++ |++|++||..++.... .+.+|.+.|.+++|+| ++ +||+|+.|++|++
T Consensus 91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~ 170 (393)
T 4gq1_A 91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII 170 (393)
T ss_dssp ------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred CcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence 44444444 67889998 9999999999886543 3568999999999998 77 9999999999999
Q ss_pred EeCCCCceEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeceee------------e-------eec
Q 003871 571 HCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFL------------H-------SFQ 630 (790)
Q Consensus 571 wd~~~~~~~~~l~~h~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l------------~-------~~~ 630 (790)
||+.++..+..+.+|..+|.+++|+|++ ++|++|+.|++|++||+++++......- . ...
T Consensus 171 Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 171 WRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred EECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 9999888888888899999999999987 4799999999999999988643211100 0 011
Q ss_pred cCCCCCCCCeEEEEEe-CCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCe------------------EEEEEec
Q 003871 631 TGLVPETTIVNHIQFH-PDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPI------------------TYATYSC 690 (790)
Q Consensus 631 ~~~~~~~~~v~~i~~s-p~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v------------------~~l~~s~ 690 (790)
.+|. ..+.++.|+ |+++.++++ .|+.+++||+.+++....+.. |...+ ....|+|
T Consensus 251 ~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 251 SGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD--STMKLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred cccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee--ecCccccEEEccccccccccCcceeEEEcc
Confidence 2333 688899987 799999985 899999999987765554432 12222 2233443
Q ss_pred --CCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEec
Q 003871 691 --DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 691 --dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
++.++++|+.||.|++||+.+++....+. +| ...|. +++||| ||++||++++|| +.+|++
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-------~~-~~~V~--svafsp-dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPI-------QL-GMPIV--DFCWHQ-DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEE-------EC-SSCEE--EEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEec-------CC-CCcEE--EEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence 44567788899999999999998776654 34 34666 999999 899999998766 666655
No 122
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-27 Score=282.22 Aligned_cols=248 Identities=15% Similarity=0.189 Sum_probs=205.6
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 438 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
.+|.+.|++++|+|+|+++++|+.||.|++|++.++. +..... ..+|..+|++++|+
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-------------------~~~~~~--l~~h~~~V~~l~~s~~ 64 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------HKLIDT--LTGHEGPVWRVDWAHP 64 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-------------------EEEEEE--ECCCSSCEEEEEECCT
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-------------------Ccccee--ccCCcCceEEEEecCC
Confidence 4799999999999999999999999999999976421 112221 23799999999997
Q ss_pred --CcEEEEec-CCeEEEEECCCCc--EEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCc--eEEEEcCC
Q 003871 516 --GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK--TKAKLKGH 585 (790)
Q Consensus 516 --~~~l~s~s-dg~I~vwd~~~~~--~~~~~~~~~~~v~~l~~s~~--g-~l~sgs~dg~I~iwd~~~~~--~~~~l~~h 585 (790)
++++++|+ ||.|++||+.+++ ....+.+|...|++++|+|+ + .+++|+.||.|++||+.++. ....+.+|
T Consensus 65 ~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~ 144 (753)
T 3jro_A 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (753)
T ss_dssp TSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC
Confidence 67899999 9999999999887 67788899999999999999 8 99999999999999998873 34567789
Q ss_pred CCCEEEEEEeC-------------CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC---C
Q 003871 586 QNRITCLAYSL-------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---Q 649 (790)
Q Consensus 586 ~~~v~~l~~sp-------------dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~---~ 649 (790)
...|.+++|+| +++++++|+.||+|++||++++.... .... ...+|. ..|++++|+|+ +
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~-~~~~h~---~~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLR 219 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSS
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc-eeee-eecCCC---CcEEEEEeccCCCCC
Confidence 99999999999 58999999999999999998754221 2222 334565 79999999999 8
Q ss_pred CEEEEE-eCCcEEEEECCCCcee---eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 650 IHLLSI-HEGQIDVYEAPTLNHT---SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 650 ~~l~~~-~dg~I~iwd~~~~~~~---~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
.+++++ .||.|++||+.++... .......|...|++++|+|+|+++++|+.||.|++|++.+
T Consensus 220 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 220 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 999985 8999999999876421 1122234688999999999999999999999999999985
No 123
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=8e-27 Score=258.04 Aligned_cols=251 Identities=14% Similarity=0.190 Sum_probs=199.7
Q ss_pred CCCCceEEEEEcCC-CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 439 SFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 439 ~h~~~V~~l~~spd-g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
+|.+.|.+++|+|+ +.++++++.||.|++|++........ ......... ...+|...|++++|+
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------~~~~~~~~~--~~~~h~~~v~~l~~~~~ 192 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------PSGECQPDL--RLRGHQKEGYGLSWNPN 192 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------TTCCCCCSE--EEECCSSCCCCEEECTT
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------ccccCCCcE--EecCCCCCeEEEEeCCC
Confidence 58999999999997 67899999999999999875322000 000001111 112689999999999
Q ss_pred Cc-EEEEec-CCeEEEEECCCCcE-------EEEEcCCCCCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCC---ceEEE
Q 003871 516 GS-HLFSAS-GGKISIFSLETFQT-------LATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTK---KTKAK 581 (790)
Q Consensus 516 ~~-~l~s~s-dg~I~vwd~~~~~~-------~~~~~~~~~~v~~l~~s~~-g-~l~sgs~dg~I~iwd~~~~---~~~~~ 581 (790)
+. +|++|+ ||.|++|++.++.. ...+.+|...|.+++|+|+ + .+++++.||.|++||++++ +.+..
T Consensus 193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~ 272 (430)
T 2xyi_A 193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 272 (430)
T ss_dssp STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence 55 899998 99999999987322 4566789999999999995 4 9999999999999999987 56778
Q ss_pred EcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCC-EEEE-EeCC
Q 003871 582 LKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEG 658 (790)
Q Consensus 582 l~~h~~~v~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~-~l~~-~~dg 658 (790)
+..|...|++++|+|+++ ++++|+.||.|++||+++.. .++. ...+|. ..|++++|+|+++ ++++ +.|+
T Consensus 273 ~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~----~~~~-~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~ 344 (430)
T 2xyi_A 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK----LKLH-SFESHK---DEIFQVQWSPHNETILASSGTDR 344 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT----SCSE-EEECCS---SCEEEEEECSSCTTEEEEEETTS
T ss_pred eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC----CCeE-EeecCC---CCEEEEEECCCCCCEEEEEeCCC
Confidence 888999999999999887 68999999999999999743 2333 223455 6999999999995 5666 4899
Q ss_pred cEEEEECCCC--------------ceeeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCC
Q 003871 659 QIDVYEAPTL--------------NHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 659 ~I~iwd~~~~--------------~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~dg~i~vwd~~~~ 712 (790)
.|++||+... +.+..+ ..|...|.+++|+|+++ +|++++.||.|++|++..+
T Consensus 345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCEEEEGGGTTCCCCHHHHHHCCTTEEEEC--CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cEEEEeCCCCccccCccccccCCcceEEEc--CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999999862 344444 34788999999999999 8999999999999998764
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.3e-25 Score=244.88 Aligned_cols=264 Identities=16% Similarity=0.158 Sum_probs=211.6
Q ss_pred EEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEE-EEec-CCeEEEE
Q 003871 455 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISIF 530 (790)
Q Consensus 455 ~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l-~s~s-dg~I~vw 530 (790)
.+++++.|+.|++||+.++.. .... .+...+.+++|+ ++++ ++++ ++.|++|
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~---------------------~~~~---~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~ 59 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKV---------------------TATI---PVGSNPMGAVISPDGTKVYVANAHSNDVSII 59 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEE---------------------EEEE---ECSSSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeE---------------------EEEe---ecCCCcceEEECCCCCEEEEECCCCCeEEEE
Confidence 567777899999999876432 2211 133558999999 6666 5665 8999999
Q ss_pred ECCCCcEEEEEcCCCCCeEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEE-EEEeCC
Q 003871 531 SLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGAD 607 (790)
Q Consensus 531 d~~~~~~~~~~~~~~~~v~~l~~s~~g-~l-~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l-~s~s~d 607 (790)
|+.+++.+..+..+. .+.+++|+|++ .+ ++++.++.|++||+.+++.+..+..| ..+.+++|+|+++++ ++++.|
T Consensus 60 d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~ 137 (391)
T 1l0q_A 60 DTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGD 137 (391)
T ss_dssp ETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTT
T ss_pred ECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCC
Confidence 999999998887655 89999999999 66 45557799999999999988887755 468999999999987 688889
Q ss_pred CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E-eCCcEEEEECCCCceeeeecCCCCCCCeEE
Q 003871 608 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITY 685 (790)
Q Consensus 608 g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~ 685 (790)
+.|++||+.+++.. ..+.. + ..+.+++|+|+++++++ + .++.|++||+++++.+..+. +...+.+
T Consensus 138 ~~v~~~d~~~~~~~-----~~~~~-~----~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~ 204 (391)
T 1l0q_A 138 KTVSVINTVTKAVI-----NTVSV-G----RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK---VEAAPSG 204 (391)
T ss_dssp TEEEEEETTTTEEE-----EEEEC-C----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---CSSEEEE
T ss_pred CEEEEEECCCCcEE-----EEEec-C----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe---cCCCccc
Confidence 99999999986532 22222 2 36799999999998854 4 68899999999998887775 3567899
Q ss_pred EEEecCCCEEEEEE---cCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEE-EEEeCCCcEEEEe
Q 003871 686 ATYSCDGKCIYVSC---KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI-ALGLTNGRVHVIE 761 (790)
Q Consensus 686 l~~s~dg~~l~sgs---~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l-as~s~Dg~i~iW~ 761 (790)
++|+|+|+++++++ .++.|++||+.+++.+..+.. | . . +.+++|+| ++++| ++++.|+.|++||
T Consensus 205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~-------~-~-~--~~~~~~s~-dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-------G-P-D--PAGIAVTP-DGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-------C-S-S--EEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred eEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec-------C-C-C--ccEEEEcc-CCCEEEEEcCCCCEEEEEE
Confidence 99999999999888 689999999999988877652 2 2 2 34899999 78877 6778999999999
Q ss_pred cCCCcccc
Q 003871 762 PLESEVEW 769 (790)
Q Consensus 762 ~~~~~~~w 769 (790)
+.+++...
T Consensus 273 ~~~~~~~~ 280 (391)
T 1l0q_A 273 TATNTITA 280 (391)
T ss_dssp TTTTEEEE
T ss_pred CCCCcEEE
Confidence 99887543
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.6e-27 Score=250.99 Aligned_cols=236 Identities=12% Similarity=0.092 Sum_probs=188.4
Q ss_pred CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCC---------CCceEEEEc-C
Q 003871 516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPC---------TKKTKAKLK-G 584 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~---------~~~~~~~l~-~ 584 (790)
+.++++|+ ||.|++||+.+++.+..+. ...|.++.++|+ +++|+.|++|++|+.. +++.+..+. +
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 123 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD 123 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence 67889999 9999999999999888876 456777888887 9999999999999665 555455544 6
Q ss_pred CCCCEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEE
Q 003871 585 HQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 661 (790)
Q Consensus 585 h~~~v~~l~~sp--dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~ 661 (790)
|.+.|.+++|+| +++++++|+.|++|++||+++++. +......+. ..+++++|+|++.+|++| .||.|+
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----~~~~~~~~~---~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-----YIVHSAKSD---VEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-----EEEECCCSS---CCCCEEEECTTSCEEEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-----EEEEecCCC---CceEEEEECCCCCEEEEEcCCCEEE
Confidence 778999999999 999999999999999999998653 221222333 579999999999999995 899999
Q ss_pred EEECCCCcee-eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEE
Q 003871 662 VYEAPTLNHT-SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 740 (790)
Q Consensus 662 iwd~~~~~~~-~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 740 (790)
+||+++++.+ ..+.. .|..+|.+++|+|+|.+|++++ |+.|++||+++++....+.... +| ...+...+++|
T Consensus 196 iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~----~~-~~~~~~~~~~~ 268 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT----IP-EFKTGTVTYDI 268 (343)
T ss_dssp EEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB----C------CCEEEEE
T ss_pred EEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc----cc-cccccceEEEE
Confidence 9999999887 66654 3789999999999999999999 5599999999987654433210 11 11222236999
Q ss_pred ecCCCCEEEEEeC-CCcEEEEecCCCcccccc
Q 003871 741 HPLEPNRIALGLT-NGRVHVIEPLESEVEWGK 771 (790)
Q Consensus 741 sp~d~~~las~s~-Dg~i~iW~~~~~~~~w~~ 771 (790)
+| ++++|++++. |+.|+||++..+...|..
T Consensus 269 ~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 269 DD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp CT-TSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred CC-CCCEEEEecCCCCcEEEEEEcccccceEe
Confidence 99 8999999998 999999999888777764
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=5.6e-25 Score=249.23 Aligned_cols=322 Identities=10% Similarity=0.088 Sum_probs=239.6
Q ss_pred CCCCCCcccceeccCCCceEeeeccccCCCCcee-eeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEec--CCCC
Q 003871 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW--QSNK 474 (790)
Q Consensus 398 ~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~-~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~--~~~~ 474 (790)
|+++.+ ++++.|++|.+||.. ++++. .+.. +|. +..++|+|||++|++++.|++|.+||+ .+.
T Consensus 147 p~~~~~----vs~~~d~~V~v~D~~----t~~~~~~i~~---g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~- 212 (543)
T 1nir_A 147 LPNLFS----VTLRDAGQIALVDGD----SKKIVKVIDT---GYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEP- 212 (543)
T ss_dssp GGGEEE----EEEGGGTEEEEEETT----TCCEEEEEEC---STT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSC-
T ss_pred CCCEEE----EEEcCCCeEEEEECC----CceEEEEEec---Ccc--cceEEECCCCCEEEEECCCCeEEEEECcCCCC-
Confidence 889888 999999999999997 34443 3331 333 889999999999999999999999998 432
Q ss_pred ccccccccccccccccCCCceeeeecccCCCCCCeEEEEec------CcEEEEec--CCeEEEEECCCCcEEEEEcCC--
Q 003871 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSLETFQTLATFANP-- 544 (790)
Q Consensus 475 ~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s------~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~-- 544 (790)
.+.... .+...+..++|+ |+++++++ +++|.+||..+++++.++..+
T Consensus 213 --------------------~~~~~i---~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~ 269 (543)
T 1nir_A 213 --------------------TKVAEI---KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 269 (543)
T ss_dssp --------------------EEEEEE---ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE
T ss_pred --------------------cEEEEE---ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCc
Confidence 222221 134567888886 57888877 799999999999999888642
Q ss_pred ---------CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEE--EEcCCCCCEEEEEEeCCCCEEEEE-eCCCcE
Q 003871 545 ---------PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSS-GADAQL 610 (790)
Q Consensus 545 ---------~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~--~l~~h~~~v~~l~~spdg~~l~s~-s~dg~I 610 (790)
...+..+.++|++ .+++...++.|.+||+.+++.+. .+. +...+.+++|+|+|++++++ ..+++|
T Consensus 270 ~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v 348 (543)
T 1nir_A 270 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKV 348 (543)
T ss_dssp CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEE
T ss_pred ccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeE
Confidence 2368899999988 77788889999999998875443 343 55678889999999987655 468999
Q ss_pred EEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC-CCEEEEE--eCCcEEEEECCC-------CceeeeecCCCCC
Q 003871 611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSI--HEGQIDVYEAPT-------LNHTSQLVPDKMD 680 (790)
Q Consensus 611 ~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~-~~~l~~~--~dg~I~iwd~~~-------~~~~~~~~~~~h~ 680 (790)
.+||..+++.... +..+..+|.+....+ ++|+ +..++++ .|++|.+||+.+ +++++++.. |.
T Consensus 349 ~v~D~~tg~l~~~-----i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~--~g 420 (543)
T 1nir_A 349 AVIDSKDRRLSAL-----VDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QG 420 (543)
T ss_dssp EEEETTTTEEEEE-----EECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC--SC
T ss_pred EEEECCCCeEEEe-----eccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc--CC
Confidence 9999999764332 222222221333333 5787 5555565 479999999998 889999875 46
Q ss_pred CCeEEEEEecCCCEEEEEE-------cCCeEEEEECCCCeEE-EEeccccc--cCCCCcccccceEEEEEecCCCCEEEE
Q 003871 681 LPITYATYSCDGKCIYVSC-------KSGHVKVFDTSTLELR-CQINLTAY--AQPGTISLELYPLVIAAHPLEPNRIAL 750 (790)
Q Consensus 681 ~~v~~l~~s~dg~~l~sgs-------~dg~i~vwd~~~~~~~-~~~~~~~~--~~~gh~~~~v~~~~v~~sp~d~~~las 750 (790)
..+..++|+|+|++|++++ .+++|.+||+.+++.. ..+..... ++ .+ ... +..+.|+| +|+.++.
T Consensus 421 ~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~-~~-~~~--~~~~~~~~-~g~~~~~ 495 (543)
T 1nir_A 421 GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLG-EG-AKR--VVQPEYNK-RGDEVWF 495 (543)
T ss_dssp SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCC-SS-CCE--EEEEEECS-SSSEEEE
T ss_pred CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccC-CC-CCc--eEeccCCC-CCCEEEE
Confidence 7788999999999999987 3789999999999876 44321100 11 11 233 44999999 8988876
Q ss_pred Ee-----CCCcEEEEecCCCccccc
Q 003871 751 GL-----TNGRVHVIEPLESEVEWG 770 (790)
Q Consensus 751 ~s-----~Dg~i~iW~~~~~~~~w~ 770 (790)
+. .|+.|.|||..+++..-.
T Consensus 496 s~~~~~~~~~~i~v~D~~t~~~~~~ 520 (543)
T 1nir_A 496 SVWNGKNDSSALVVVDDKTLKLKAV 520 (543)
T ss_dssp EEECCTTSCCEEEEEETTTTEEEEE
T ss_pred EeecCCCCCCeEEEEECCCceEEEe
Confidence 52 479999999999987643
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=2.8e-26 Score=250.37 Aligned_cols=281 Identities=10% Similarity=0.025 Sum_probs=191.8
Q ss_pred CCCCCCcccceeccCCCceEeeeccccCCCCc----eeeeeccCCCCCCceEEE--------------------EEcCCC
Q 003871 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSE----CRTLLLPDNSFGGRVVRL--------------------IYSHSG 453 (790)
Q Consensus 398 ~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~----~~~~~l~~~~h~~~V~~l--------------------~~spdg 453 (790)
|++..+ ++++.|+.|.+|+......... ...+.. -.|..++..+ .+++++
T Consensus 28 ~~~~~l----~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (393)
T 4gq1_A 28 PSCSNL----LAIGHDTGITIYCASEEQTPGSTGLTLQELFT--IQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYS 101 (393)
T ss_dssp GGGTTE----EEEEESSEEEEEEEEECCSSSCCSEEEEEEEE--EECSSCEEEEEECTTCEEECC----------CCEEE
T ss_pred CCCCCE----EEEECCCCEEEEECCCCCcccccccceeeeEE--EecCCCeeeEeecCCccccccccCCCcceeecCCCC
Confidence 666666 6666789999998753211100 000000 0123334443 344566
Q ss_pred CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec----------CcEEEEec
Q 003871 454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----------GSHLFSAS 523 (790)
Q Consensus 454 ~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s----------~~~l~s~s 523 (790)
.++++++.|++|++||..++... . ........+|.+.|.+++|+ +++|++++
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~----------------~--~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETII----------------T--QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEE----------------E--EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred CEEEEEeCCCcEEEEECCCCccc----------------e--eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 78999999999999998764320 0 00111234899999999995 57899999
Q ss_pred -CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEE-------------------
Q 003871 524 -GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK------------------- 581 (790)
Q Consensus 524 -dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~------------------- 581 (790)
|++|++||+.++.....+..|...+.+++|+|++ +|++|+.||+|++||+.+++....
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 9999999999888888888899999999999998 899999999999999988754322
Q ss_pred ------EcCCCCCEEEEEEe-CCCCEEEEEeCCCcEEEEECCCCceeeceeeee-------------eccCCCCCCCCeE
Q 003871 582 ------LKGHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-------------FQTGLVPETTIVN 641 (790)
Q Consensus 582 ------l~~h~~~v~~l~~s-pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~-------------~~~~~~~~~~~v~ 641 (790)
..+|...+.++.|+ ||++.+++++.|+++++||+.+++......... ....+ ....
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~ 319 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF----PSLL 319 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS----CCSS
T ss_pred ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc----Ccce
Confidence 23577788899987 799999999999999999998754321110000 00001 1222
Q ss_pred EEEEeC-CCCE-EEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 003871 642 HIQFHP-DQIH-LLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 642 ~i~~sp-~~~~-l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~ 709 (790)
...|+| .+.. +++| .||.|++||+.+++....... |..+|.+++|+|||++||+++.+| +.+|.+
T Consensus 320 ~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~--~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 320 GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ--LGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE--CSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC--CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 333444 3444 4455 799999999999988777654 578999999999999999998766 555554
No 128
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=7.1e-26 Score=278.40 Aligned_cols=369 Identities=11% Similarity=0.036 Sum_probs=266.7
Q ss_pred CCCccccccccCCC----CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 327 MDWWVPYCINVMPN----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLP 402 (790)
Q Consensus 327 ~~~v~v~~i~fspd----~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~ 402 (790)
...+. ..+|||+ ..++.|. +|+..+|+. +.+.+|...+ .+++|| |||+.
T Consensus 14 ~~~~~--~~~~S~~~iaf~~~~~l~--~~~~~gg~~---------~~lt~~~~~v-------~~~~~S-------PDG~~ 66 (1045)
T 1k32_A 14 PNLLL--NPDIHGDRIIFVCCDDLW--EHDLKSGST---------RKIVSNLGVI-------NNARFF-------PDGRK 66 (1045)
T ss_dssp CCCCE--EEEEETTEEEEEETTEEE--EEETTTCCE---------EEEECSSSEE-------EEEEEC-------TTSSE
T ss_pred cceEe--CcEEeCCEEEEEECCcEE--EEECCCCcE---------EEeeeCCCcc-------cCeEEC-------CCCCE
Confidence 34444 8888888 3345555 999988875 6677899988 999999 99999
Q ss_pred CcccceeccC------CCceEeeeccccCCCCceeeeeccCCCCCCce-------EEEEEcCCCCEEEEEeCC------C
Q 003871 403 DADSAVCAKS------LEKSVNLKLQLINEPSECRTLLLPDNSFGGRV-------VRLIYSHSGDFLVALTQT------A 463 (790)
Q Consensus 403 la~~~at~s~------d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V-------~~l~~spdg~~l~s~~~d------g 463 (790)
| |+++. +..|.+|++. ++....+. .|...+ .+++|||||+.+++++.+ .
T Consensus 67 l----a~~s~~~~~~~~~~i~~~d~~----~g~~~~lt----~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~ 134 (1045)
T 1k32_A 67 I----AIRVMRGSSLNTADLYFYNGE----NGEIKRIT----YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMT 134 (1045)
T ss_dssp E----EEEEEESTTCCEEEEEEEETT----TTEEEECC----CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCC
T ss_pred E----EEEEeeccCCCCCeEEEEECC----CCCeEEcc----cCCCcccccccccccccCCCCCEEEEEECCcCCCcccc
Confidence 9 77653 3479999986 45555544 577777 999999999966666544 3
Q ss_pred cEEEEecCCCCc---ccccc-cc------------------------ccccccccCCC-ceeeeecccCCCCCCeEEEEe
Q 003871 464 THKLWKWQSNKQ---SLEEE-NV------------------------NMESQLYQPSS-KLVMTNDIAADPKDSISCFAL 514 (790)
Q Consensus 464 ~i~vw~~~~~~~---~~g~~-~~------------------------~~~~~i~~~~~-~~~~~~~~~~~~~~~V~~l~~ 514 (790)
.+.+|++.++.. ..+.. .. ....++|.... +..... .+|...+.++.|
T Consensus 135 ~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l---~~~~~~v~~~~~ 211 (1045)
T 1k32_A 135 CLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI---VDMSTHVSSPVI 211 (1045)
T ss_dssp EEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE---ECCSSCCEEEEE
T ss_pred eEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC---cCCCCcccceEE
Confidence 577777766543 00100 00 01123333211 332222 368999999999
Q ss_pred c-CcEEEEec-CCeEEEEECCC-CcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcC------
Q 003871 515 R-GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG------ 584 (790)
Q Consensus 515 s-~~~l~s~s-dg~I~vwd~~~-~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~------ 584 (790)
+ +.++++++ ++.+.+|.+.. +.....+..+. .+...+|+|+| .++.+. ++.|++||+..+. +..+.+
T Consensus 212 s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~ 288 (1045)
T 1k32_A 212 VGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLESP 288 (1045)
T ss_dssp ETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCCBC
T ss_pred eCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCccccc
Confidence 9 64555555 78888887653 44455555554 46678999999 888774 8899999995443 335554
Q ss_pred -----CCCCEEEEEEe-CCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCC-CeEEEEEeCCCCEEEEE-e
Q 003871 585 -----HQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT-IVNHIQFHPDQIHLLSI-H 656 (790)
Q Consensus 585 -----h~~~v~~l~~s-pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~-~v~~i~~sp~~~~l~~~-~ 656 (790)
|...+.+++|+ |||+++++++ ++.|.+|++.+++.. . +. .+. . .+..++|+ ||+.++.+ .
T Consensus 289 ~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-----~-~~-~~~---~~~~~~~~~s-dg~~l~~~s~ 356 (1045)
T 1k32_A 289 EDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-----K-VP-EPL---RIRYVRRGGD-TKVAFIHGTR 356 (1045)
T ss_dssp CSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-----E-CS-CCS---CEEEEEECSS-SEEEEEEEET
T ss_pred ccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-----E-cc-CCC---cceEEeeeEc-CCCeEEEEEC
Confidence 33468899999 9999999888 789999999875421 1 21 222 4 78999999 99998885 5
Q ss_pred CCcEE-EEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccce
Q 003871 657 EGQID-VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 735 (790)
Q Consensus 657 dg~I~-iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 735 (790)
++.+. +||+.+++.. .+. .|...+..++|+|||++|++++.++.|++||+.+++...... +| ...+.
T Consensus 357 ~~~l~~~~d~~~~~~~-~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-------~~-~~~v~- 424 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAE-KFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-------SR-EAMIT- 424 (1045)
T ss_dssp TEEEEEEEETTTCCEE-ECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------CS-SSCCC-
T ss_pred CCceEEEEECCCCCce-Eec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-------CC-CCCcc-
Confidence 66788 8899876654 343 357889999999999999999999999999999998877654 33 44566
Q ss_pred EEEEEecCCCCEEEEEeCCC----------cEEEEecCCCc
Q 003871 736 LVIAAHPLEPNRIALGLTNG----------RVHVIEPLESE 766 (790)
Q Consensus 736 ~~v~~sp~d~~~las~s~Dg----------~i~iW~~~~~~ 766 (790)
+++|+| ||++|++++.++ .|++||+.+++
T Consensus 425 -~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 425 -DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp -CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred -ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 899999 899999887654 99999998775
No 129
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=1.9e-25 Score=274.58 Aligned_cols=380 Identities=11% Similarity=0.005 Sum_probs=262.5
Q ss_pred ccccCccccchhhhhhhhccCCCccccccccCCC-------CC----CCcceeeeccCCCcccccccccCCCCCCCCCCC
Q 003871 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------AN----NETISLKDFPTVSNLRYASSILTDKPNQEGRPL 375 (790)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~v~~i~fspd-------~~----d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~ 375 (790)
+.|.+|++.+++. ..+..|...+. +++|||| +. ++...||+||..+|+. +.+.+|..
T Consensus 33 ~~l~~~~~~gg~~-~~lt~~~~~v~--~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~---------~~lt~~~~ 100 (1045)
T 1k32_A 33 DDLWEHDLKSGST-RKIVSNLGVIN--NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI---------KRITYFSG 100 (1045)
T ss_dssp TEEEEEETTTCCE-EEEECSSSEEE--EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE---------EECCCCCE
T ss_pred CcEEEEECCCCcE-EEeeeCCCccc--CeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe---------EEcccCCC
Confidence 4566677766653 45567877776 9999999 22 3545566999988874 66677765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCC------CceEeeeccccCCCCceeeeecc-------------
Q 003871 376 DASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSL------EKSVNLKLQLINEPSECRTLLLP------------- 436 (790)
Q Consensus 376 ~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d------~~i~iwd~~~~~~~~~~~~~~l~------------- 436 (790)
.+...-..+.+++|+ |||+.+ ++++.+ ..+.+|++.. +....+...
T Consensus 101 ~~~~~~~~~~~~~~S-------pDg~ll----~~~~~~~~~~~~~~l~~~~~~~----g~~~~l~~~~~~~~~~spG~l~ 165 (1045)
T 1k32_A 101 KSTGRRMFTDVAGFD-------PDGNLI----ISTDAMQPFSSMTCLYRVENDG----INFVPLNLGPATHILFADGRRV 165 (1045)
T ss_dssp EEETTEECSEEEEEC-------TTCCEE----EEECTTSSSTTCCEEEEEEGGG----TEEEECCSCSCSEEEEETTEEE
T ss_pred cccccccccccccCC-------CCCEEE----EEECCcCCCcccceEEEEECCC----CCeEEecCCCcceeeeCCCEEE
Confidence 420000000578999 999966 777754 3466677652 222221100
Q ss_pred ---------------------------------CCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccc
Q 003871 437 ---------------------------------DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 483 (790)
Q Consensus 437 ---------------------------------~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~ 483 (790)
-.+|...+.++.|+++ ..+++++.++.+.+|.+..
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~----------- 233 (1045)
T 1k32_A 166 IGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDL----------- 233 (1045)
T ss_dssp EEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEET-----------
T ss_pred EeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeC-----------
Confidence 0124444555555554 3333334445555554331
Q ss_pred cccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEecCCeEEEEECCCCcEEEEEcC-----------CCCCeEE
Q 003871 484 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFAN-----------PPPIATY 550 (790)
Q Consensus 484 ~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~~-----------~~~~v~~ 550 (790)
..+...... .|. .+...+|+ |+.++++.++.|.+|++...+ +..+.. |...+.+
T Consensus 234 --------~g~~~~~l~---~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~ 300 (1045)
T 1k32_A 234 --------DGKDLRKHT---SFT-DYYPRHLNTDGRRILFSKGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFA 300 (1045)
T ss_dssp --------TSCSCEECC---CCC-SSCEEEEEESSSCEEEEETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGE
T ss_pred --------CCCcceEec---CCC-CcceeeEcCCCCEEEEEeCCEEEEecCCceE-eeeeccCcccccccccccccccce
Confidence 111122111 233 45667888 888888889999999995443 345544 2336889
Q ss_pred EEEc-CCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCcEE-EEECCCCceeeceee
Q 003871 551 FILL-PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RITCLAYSLSLNVLVSSGADAQLC-VWDAVGWKKLCSKFL 626 (790)
Q Consensus 551 l~~s-~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~-~v~~l~~spdg~~l~s~s~dg~I~-vwd~~~~~~~~~~~l 626 (790)
++|+ |+| .+++++ ++.|++|+..+++.. .+..|.. .+..++|+ ||+.+++++.++.+. +||+.+++.
T Consensus 301 ~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~------ 371 (1045)
T 1k32_A 301 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA------ 371 (1045)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE------
T ss_pred eeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc------
Confidence 9999 999 888887 789999999877654 4667777 89999999 999999999988888 999987532
Q ss_pred eeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC---
Q 003871 627 HSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG--- 702 (790)
Q Consensus 627 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg--- 702 (790)
..+. ++. ..+..++|+|||++|+++ .++.|++||+.+++....... |...+.+++|||||++|++++.++
T Consensus 372 ~~l~-~~~---~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~--~~~~v~~~~~SpDG~~la~~~~~~~~~ 445 (1045)
T 1k32_A 372 EKFE-ENL---GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS--REAMITDFTISDNSRFIAYGFPLKHGE 445 (1045)
T ss_dssp EECC-CCC---CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred eEec-CCc---cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC--CCCCccceEECCCCCeEEEEecCcccc
Confidence 2133 444 589999999999999985 788999999999987766543 578899999999999999887754
Q ss_pred -------eEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 703 -------HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 703 -------~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
.|++||+.+++ ...+. +| ...+. +++|+| ||++|++++.++...+|+....
T Consensus 446 ~~~~~~~~i~l~d~~~g~-~~~l~-------~~-~~~~~--~~~~sp-dG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEGRK-IFAAT-------TE-NSHDY--APAFDA-DSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp TCSCCEEEEEEEETTTTE-EEECS-------CS-SSBEE--EEEECT-TSCEEEEEESCCCCCEECSSSS
T ss_pred ccCCCCCeEEEEECCCCc-EEEee-------CC-CcccC--CceEcC-CCCEEEEEecccCCcCcchhcc
Confidence 89999999987 44443 22 33344 899999 8999999999988888886543
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=2.6e-24 Score=243.77 Aligned_cols=322 Identities=12% Similarity=0.088 Sum_probs=237.5
Q ss_pred cccCCC-------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 003871 335 INVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSA 407 (790)
Q Consensus 335 i~fspd-------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~ 407 (790)
-+|+|+ +.|++|. +||..+++++ .++..+.. + .+++|+ |||+++
T Consensus 143 ~~~~p~~~~~vs~~~d~~V~--v~D~~t~~~~--------~~i~~g~~-~-------~~v~~s-------pdg~~l---- 193 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAGQIA--LVDGDSKKIV--------KVIDTGYA-V-------HISRMS-------ASGRYL---- 193 (543)
T ss_dssp SCCCGGGEEEEEEGGGTEEE--EEETTTCCEE--------EEEECSTT-E-------EEEEEC-------TTSCEE----
T ss_pred cccCCCCEEEEEEcCCCeEE--EEECCCceEE--------EEEecCcc-c-------ceEEEC-------CCCCEE----
Confidence 347776 6789999 9999999887 66663322 5 889999 999999
Q ss_pred eeccCCCceEeeeccccCCCCce-eeeeccCCCCCCceEEEEEcC----CCCEEEEEeC-CCcEEEEecCCCCccccccc
Q 003871 408 VCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSH----SGDFLVALTQ-TATHKLWKWQSNKQSLEEEN 481 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~~~~~~-~~~~l~~~~h~~~V~~l~~sp----dg~~l~s~~~-dg~i~vw~~~~~~~~~g~~~ 481 (790)
++++.|++|++||+.. .+..+ ..+. +...+..++|+| ||+++++++. +++|.+||..+...
T Consensus 194 ~v~~~d~~V~v~D~~~--~t~~~~~~i~-----~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~------ 260 (543)
T 1nir_A 194 LVIGRDARIDMIDLWA--KEPTKVAEIK-----IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP------ 260 (543)
T ss_dssp EEEETTSEEEEEETTS--SSCEEEEEEE-----CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE------
T ss_pred EEECCCCeEEEEECcC--CCCcEEEEEe-----cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc------
Confidence 9999999999999931 02333 3333 356789999999 9999999985 89999999876443
Q ss_pred cccccccccCCCceeeeecccC---------CCCCCeEEEEec--CcE-EEEec-CCeEEEEECCCCcEEE--EEcCCCC
Q 003871 482 VNMESQLYQPSSKLVMTNDIAA---------DPKDSISCFALR--GSH-LFSAS-GGKISIFSLETFQTLA--TFANPPP 546 (790)
Q Consensus 482 ~~~~~~i~~~~~~~~~~~~~~~---------~~~~~V~~l~~s--~~~-l~s~s-dg~I~vwd~~~~~~~~--~~~~~~~ 546 (790)
+...... .+...+.++.++ +.. +++.. ++.|.+||..+++.+. .+. +..
T Consensus 261 ---------------~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~ 324 (543)
T 1nir_A 261 ---------------KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAP 324 (543)
T ss_dssp ---------------EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCS
T ss_pred ---------------ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCc
Confidence 1110000 123478899998 444 55555 7999999998865444 443 456
Q ss_pred CeEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCceEEEEcC----CCCCEEEEEEeCC-CCEEEEEe-CCCcEEEEECCCC
Q 003871 547 IATYFILLPQD-LFAFG-FDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLS-LNVLVSSG-ADAQLCVWDAVGW 618 (790)
Q Consensus 547 ~v~~l~~s~~g-~l~sg-s~dg~I~iwd~~~~~~~~~l~~----h~~~v~~l~~spd-g~~l~s~s-~dg~I~vwd~~~~ 618 (790)
.+.+++|+|+| +++++ ..+++|.+||..+++++..+.. |.+....+ ++|+ +..++++. .|++|.+||+.+.
T Consensus 325 ~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~ 403 (543)
T 1nir_A 325 FLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPK 403 (543)
T ss_dssp SCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred CccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCC
Confidence 67889999999 66554 5688999999999999888764 65444443 5787 66677775 5899999999872
Q ss_pred ce--eeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEe--------CCcEEEEECCCCcee-eeecC------CCCCC
Q 003871 619 KK--LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--------EGQIDVYEAPTLNHT-SQLVP------DKMDL 681 (790)
Q Consensus 619 ~~--~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--------dg~I~iwd~~~~~~~-~~~~~------~~h~~ 681 (790)
.. ...+.++++. .|. ..+..++|+|+|++|+++. +++|.+||+.+++.. ..+.. ..+..
T Consensus 404 ~~~~~~~~~v~~l~-~~g---~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~ 479 (543)
T 1nir_A 404 NHPQYAWKKVAELQ-GQG---GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK 479 (543)
T ss_dssp TCTTTBTSEEEEEE-CSC---SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCC
T ss_pred CCchhcCeEEEEEE-cCC---CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCC
Confidence 10 0123444333 333 4678899999999999953 679999999999877 44311 13467
Q ss_pred CeEEEEEecCCCEEEEEE-----cCCeEEEEECCCCeEEEEec
Q 003871 682 PITYATYSCDGKCIYVSC-----KSGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 682 ~v~~l~~s~dg~~l~sgs-----~dg~i~vwd~~~~~~~~~~~ 719 (790)
.+..++|+|+|+.++++. .|+.|.|||..+++++.++.
T Consensus 480 ~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 480 RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 899999999999998763 47999999999999998876
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=9.2e-24 Score=231.88 Aligned_cols=292 Identities=11% Similarity=0.012 Sum_probs=216.7
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceecc----CCC----ceEeeec--cccCCCCceeeeeccCCCCCCceEEEEEcC---
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAK----SLE----KSVNLKL--QLINEPSECRTLLLPDNSFGGRVVRLIYSH--- 451 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s----~d~----~i~iwd~--~~~~~~~~~~~~~l~~~~h~~~V~~l~~sp--- 451 (790)
....|+ ++|..+ +++|+ .|| ++++||+ .. ........+ .+|...+..+++++
T Consensus 66 ~~~~w~-------~~g~~~---~~~g~~~~~~~G~~~~~i~lwd~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~d~ 130 (415)
T 2hqs_A 66 QPAAWS-------ALGIDA---VVVGQVTPNPDGSYNVAYQLVDTGGAP---GTVLAQNSY--KVNKQWLRYAGHTASDE 130 (415)
T ss_dssp CHHHHH-------TTTCCE---EEEEEEEECTTSCEEEEEEEEECSSST---TCEEEEEEE--EECGGGHHHHHHHHHHH
T ss_pred CHHHHH-------hcCCCE---EEEEEEEECCCCeEEEEEEEEeCCCCC---CCEEeeeEE--EcChhHHHHHHHHHHHH
Confidence 777887 777654 25765 567 8999999 63 222222222 25777788777765
Q ss_pred -----------CCCEEEEEeCC------CcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEe
Q 003871 452 -----------SGDFLVALTQT------ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 514 (790)
Q Consensus 452 -----------dg~~l~s~~~d------g~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~ 514 (790)
.+..++.++.+ +.|++||+..... ... .+|...+.+++|
T Consensus 131 ~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~---------------------~~l---~~~~~~v~~~~~ 186 (415)
T 2hqs_A 131 VFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ---------------------FVV---HRSPQPLMSPAW 186 (415)
T ss_dssp HHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC---------------------EEE---EEESSCEEEEEE
T ss_pred HHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC---------------------EEE---eCCCCcceeeEE
Confidence 25667777664 7899999764221 111 147889999999
Q ss_pred c--CcEEEEec-CC---eEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCCCc--EEEEeCCCCceEEEEcC
Q 003871 515 R--GSHLFSAS-GG---KISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSS--ILVHCPCTKKTKAKLKG 584 (790)
Q Consensus 515 s--~~~l~s~s-dg---~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~-sgs~dg~--I~iwd~~~~~~~~~l~~ 584 (790)
+ |++|++++ ++ .|++||+.+++.. .+..+...+.+++|+||| .|+ +++.++. |++||+.+++. ..+..
T Consensus 187 Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~ 264 (415)
T 2hqs_A 187 SPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD 264 (415)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCC
T ss_pred cCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcC
Confidence 9 88899888 53 9999999998875 466678889999999999 666 6666664 99999998876 56777
Q ss_pred CCCCEEEEEEeCCCCEEEEEeC-CC--cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eC---
Q 003871 585 HQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE--- 657 (790)
Q Consensus 585 h~~~v~~l~~spdg~~l~s~s~-dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d--- 657 (790)
|...+.+++|+|||++|++++. ++ .|++||+.+++.. . +. .+. ..+.+++|+|+|++|+++ .+
T Consensus 265 ~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~---~---l~-~~~---~~~~~~~~spdG~~l~~~~~~~g~ 334 (415)
T 2hqs_A 265 GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ---R---IT-WEG---SQNQDADVSSDGKFMVMVSSNGGQ 334 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE---E---CC-CSS---SEEEEEEECTTSSEEEEEEECSSC
T ss_pred CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE---E---Ee-cCC---CcccCeEECCCCCEEEEEECcCCc
Confidence 8889999999999999998886 44 6788898875421 1 11 222 478899999999999984 33
Q ss_pred CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC---eEEEEECCCCeEEEEeccccccCCCCcccccc
Q 003871 658 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELY 734 (790)
Q Consensus 658 g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg---~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 734 (790)
..|++||+.+++.. .+.. + ..+.+++|+|||++|++++.++ .|++||+.++. ...+. +| .+.|.
T Consensus 335 ~~i~~~d~~~~~~~-~l~~--~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~-------~~-~~~v~ 401 (415)
T 2hqs_A 335 QHIAKQDLATGGVQ-VLSS--T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLP-------AT-DGQVK 401 (415)
T ss_dssp EEEEEEETTTCCEE-ECCC--S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECC-------CS-SSEEE
T ss_pred eEEEEEECCCCCEE-EecC--C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEee-------CC-CCCCc
Confidence 47999999988764 3432 2 3899999999999999988877 89999998554 44443 33 45666
Q ss_pred eEEEEEec
Q 003871 735 PLVIAAHP 742 (790)
Q Consensus 735 ~~~v~~sp 742 (790)
+++|+|
T Consensus 402 --~~~~~~ 407 (415)
T 2hqs_A 402 --FPAWSP 407 (415)
T ss_dssp --EEEECC
T ss_pred --CCcccc
Confidence 999999
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=1.5e-23 Score=248.65 Aligned_cols=322 Identities=10% Similarity=0.049 Sum_probs=228.3
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccC-CC-----ceEeeeccccCCCCceeeeeccCCCCC-----------------
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKS-LE-----KSVNLKLQLINEPSECRTLLLPDNSFG----------------- 441 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~-d~-----~i~iwd~~~~~~~~~~~~~~l~~~~h~----------------- 441 (790)
++++|| |||+++ ++++. |+ +|++||+.+ +....+. ..+++.
T Consensus 40 ~~~~~S-------pdG~~l----a~~~~~d~~~~~~~i~~~d~~~----g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 103 (741)
T 2ecf_A 40 MKPKVA-------PDGSRV----TFLRGKDSDRNQLDLWSYDIGS----GQTRLLV-DSKVVLPGTETLSDEEKARRERQ 103 (741)
T ss_dssp EEEEEC-------TTSSEE----EEEECCSSCTTEEEEEEEETTT----CCEEEEE-CGGGTC-----------------
T ss_pred CCceEe-------cCCCEE----EEEeccCCCCcccEEEEEECCC----CceeEcc-chhhcccccccccchhhhhhhhh
Confidence 789999 999999 88887 88 899999973 4444332 111122
Q ss_pred -----CceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-
Q 003871 442 -----GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 515 (790)
Q Consensus 442 -----~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s- 515 (790)
..|.+++|||||++|++++. +.|.+||+.++.. ..... ...+...+.+++|+
T Consensus 104 ~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~------------------~~~~~---l~~~~~~~~~~~~SP 161 (741)
T 2ecf_A 104 RIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGK------------------AAVRQ---LTHGEGFATDAKLSP 161 (741)
T ss_dssp ---CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCST------------------TSCCB---CCCSSSCEEEEEECT
T ss_pred hhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCc------------------ceEEE---cccCCcccccccCCC
Confidence 34889999999999999887 8999999876410 00111 11467789999999
Q ss_pred -CcEEEEecCCeEEEEECCCCcEEEEEcCCCCC----------------eEEEEEcCCC-eEEEEeCCC-----------
Q 003871 516 -GSHLFSASGGKISIFSLETFQTLATFANPPPI----------------ATYFILLPQD-LFAFGFDDS----------- 566 (790)
Q Consensus 516 -~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~----------------v~~l~~s~~g-~l~sgs~dg----------- 566 (790)
|++|++++++.|.+||+.+++.......+... +.+++|+||| .|++++.|+
T Consensus 162 DG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~ 241 (741)
T 2ecf_A 162 KGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEV 241 (741)
T ss_dssp TSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCC
Confidence 88999999889999999988766544433332 4779999999 888887665
Q ss_pred ----------------------cEEEEeCCC-CceEEEEc--CCCCCEEEEEEeCCCCEEEEEeC-----CCcEEEEECC
Q 003871 567 ----------------------SILVHCPCT-KKTKAKLK--GHQNRITCLAYSLSLNVLVSSGA-----DAQLCVWDAV 616 (790)
Q Consensus 567 ----------------------~I~iwd~~~-~~~~~~l~--~h~~~v~~l~~spdg~~l~s~s~-----dg~I~vwd~~ 616 (790)
.|++||+.+ ++...... .|...+..++| |||++|++++. +..|++||+.
T Consensus 242 ~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~ 320 (741)
T 2ecf_A 242 YADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA 320 (741)
T ss_dssp CSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT
T ss_pred CCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC
Confidence 789999998 87654433 47788999999 99999997764 5679999999
Q ss_pred CCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECC-CCceeeeecCCCCCCCeEEE-EEecCCC
Q 003871 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITYA-TYSCDGK 693 (790)
Q Consensus 617 ~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~-~~~~~~~~~~~~h~~~v~~l-~~s~dg~ 693 (790)
+++.... +. .........+.+++|+|||++++++ .|+.++||.+. ++. ...+.. +...+..+ .|+|||+
T Consensus 321 ~g~~~~~--~~---~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~ 392 (741)
T 2ecf_A 321 SNQQRVL--AH---ETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAG 392 (741)
T ss_dssp TCCEEEE--EE---EECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTT
T ss_pred CCceEEE--EE---cCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCC
Confidence 8653221 11 1111000134688999999977775 67776676654 344 555543 46778887 5999999
Q ss_pred EEEEE-EcCC--eEEEEECCC-CeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC----CcEEEEecCCC
Q 003871 694 CIYVS-CKSG--HVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLES 765 (790)
Q Consensus 694 ~l~sg-s~dg--~i~vwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D----g~i~iW~~~~~ 765 (790)
.|+.. +.++ .+++|++.. +.....+. + ...+. +++|+| ||++|+....+ +.+.+|+...+
T Consensus 393 ~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~-------~--~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 393 LAYFRAGIESARESQIYAVPLQGGQPQRLS-------K--APGMH--SASFAR-NASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEEEECSSCTTCBEEEEEETTCCCCEECC-------C--SCSEE--EEEECT-TSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EEEEEEeCCCCceEEEEEEEcCCCCeeecc-------c--CCCce--EEEECC-CCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 87654 4455 899999864 54444443 1 22455 899999 88888766443 46888987554
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.7e-23 Score=229.84 Aligned_cols=277 Identities=12% Similarity=0.043 Sum_probs=202.0
Q ss_pred CCceEEEEEcCCCC-EEEEEe----CCC----cEEEEec--CCCCccccccccccccccccCCCceeeeecccCCCCCCe
Q 003871 441 GGRVVRLIYSHSGD-FLVALT----QTA----THKLWKW--QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI 509 (790)
Q Consensus 441 ~~~V~~l~~spdg~-~l~s~~----~dg----~i~vw~~--~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V 509 (790)
...+....|++.|. ++++|+ .+| .+++||+ .++....+.. ..+|...+
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~---------------------~~~~~~~~ 120 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS---------------------YKVNKQWL 120 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE---------------------EEECGGGH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE---------------------EEcChhHH
Confidence 34677778888886 444665 367 8999998 6654310000 00222323
Q ss_pred EEEEec----------------CcEEEEec-C------CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC
Q 003871 510 SCFALR----------------GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD 565 (790)
Q Consensus 510 ~~l~~s----------------~~~l~s~s-d------g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~d 565 (790)
..+++. +..++.++ + +.|++||+. +.....+..|...+.+++|+|+| .|++++.+
T Consensus 121 ~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~ 199 (415)
T 2hqs_A 121 RYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECT
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEec
Confidence 222221 34455444 3 699999997 45567777888999999999999 99999887
Q ss_pred C---cEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEE-EEeCCCc--EEEEECCCCceeeceeeeeeccCCCCCCCC
Q 003871 566 S---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTI 639 (790)
Q Consensus 566 g---~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~-s~s~dg~--I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~ 639 (790)
+ .|++||+.+++.. .+..|...+.+++|+|||++|+ +++.|+. |++||+.+++. ..+. .|. ..
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~------~~l~-~~~---~~ 268 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI------RQVT-DGR---SN 268 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE------EECC-CCS---SC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE------EeCc-CCC---Cc
Confidence 5 9999999998775 5667888999999999999888 6666655 99999988542 1122 333 57
Q ss_pred eEEEEEeCCCCEEEEE-e-CC--cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCC
Q 003871 640 VNHIQFHPDQIHLLSI-H-EG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTL 712 (790)
Q Consensus 640 v~~i~~sp~~~~l~~~-~-dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d---g~i~vwd~~~~ 712 (790)
+.+++|+|||++|+++ . ++ .|++||+.+++.. .+.. +...+.+++|+|||++|++++.+ +.|++||+.++
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 9999999999999884 3 34 6888899887643 3332 46678999999999999988865 58999999998
Q ss_pred eEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCC---cEEEEecCCCc
Q 003871 713 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG---RVHVIEPLESE 766 (790)
Q Consensus 713 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg---~i~iW~~~~~~ 766 (790)
+... +. ++ . .+. +++|+| +|++|++++.|+ .|++|++..+.
T Consensus 346 ~~~~-l~-------~~-~-~~~--~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 346 GVQV-LS-------ST-F-LDE--TPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp CEEE-CC-------CS-S-SCE--EEEECT-TSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred CEEE-ec-------CC-C-CcC--CeEEcC-CCCEEEEEEcCCCccEEEEEECCCCc
Confidence 8643 32 22 2 444 999999 899999988877 79999987554
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=1.9e-22 Score=238.55 Aligned_cols=310 Identities=13% Similarity=0.057 Sum_probs=215.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCC---ceEEEEEcCCCCEEEEEeC
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG---RVVRLIYSHSGDFLVALTQ 461 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~---~V~~l~~spdg~~l~s~~~ 461 (790)
.+++|+ |||+++ ++ +.|++|++||+.+ +....+. .+|.. .|.+++|||||++|++++.
T Consensus 20 ~~~~~s-------pdg~~~----~~-~~dg~i~~~d~~~----g~~~~~~---~~~~~~~~~v~~~~~SpDg~~l~~~~~ 80 (723)
T 1xfd_A 20 PEAKWI-------SDTEFI----YR-EQKGTVRLWNVET----NTSTVLI---EGKKIESLRAIRYEISPDREYALFSYN 80 (723)
T ss_dssp CCCCBS-------SSSCBC----CC-CSSSCEEEBCGGG----CCCEEEE---CTTTTTTTTCSEEEECTTSSEEEEEES
T ss_pred cccEEc-------CCCcEE----EE-eCCCCEEEEECCC----CcEEEEe---ccccccccccceEEECCCCCEEEEEec
Confidence 789999 999977 66 6899999999974 4444433 13443 4999999999999999987
Q ss_pred C---------CcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEecCCeEEEE
Q 003871 462 T---------ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIF 530 (790)
Q Consensus 462 d---------g~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~sdg~I~vw 530 (790)
+ +.+.+||+.++.. .......++...+..++|+ |+.|++++++.|++|
T Consensus 81 ~~~~~~~~~~~~i~~~d~~~~~~---------------------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~ 139 (723)
T 1xfd_A 81 VEPIYQHSYTGYYVLSKIPHGDP---------------------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYC 139 (723)
T ss_dssp CCCCSSSCCCSEEEEEESSSCCC---------------------EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEE
T ss_pred CccceeecceeeEEEEECCCCce---------------------EeccCCccccccccccEECCCCCEEEEEECCeEEEE
Confidence 5 6777888765432 1111112455568889999 889999999999999
Q ss_pred ECCCCcEEEEEcCCCCCe------------------EEEEEcCCC-eEEEEeCCC-------------------------
Q 003871 531 SLETFQTLATFANPPPIA------------------TYFILLPQD-LFAFGFDDS------------------------- 566 (790)
Q Consensus 531 d~~~~~~~~~~~~~~~~v------------------~~l~~s~~g-~l~sgs~dg------------------------- 566 (790)
|+.+++.......+...+ .+++|+||| .|++++.|+
T Consensus 140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 999888776665444333 789999999 888877543
Q ss_pred ---------cEEEEeCCCCceEEEEcCC------CCCEEEEEEeCCCCEEEEEeC----CCcEEEEECCCCceeeceeee
Q 003871 567 ---------SILVHCPCTKKTKAKLKGH------QNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWKKLCSKFLH 627 (790)
Q Consensus 567 ---------~I~iwd~~~~~~~~~l~~h------~~~v~~l~~spdg~~l~s~s~----dg~I~vwd~~~~~~~~~~~l~ 627 (790)
.|++||+.+++....+..+ ...+.+++|+|||+++++.+. +..|++||+.+++....
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~---- 295 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK---- 295 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE----
T ss_pred CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE----
Confidence 7999999988765666654 567899999999998877653 35799999998653221
Q ss_pred eeccCCCCCCCCe----EEEEEeCCCCEEEE--E-eCC------cEEEEE-CCCCc--eeeeecCCCCCCCeEE-EEEec
Q 003871 628 SFQTGLVPETTIV----NHIQFHPDQIHLLS--I-HEG------QIDVYE-APTLN--HTSQLVPDKMDLPITY-ATYSC 690 (790)
Q Consensus 628 ~~~~~~~~~~~~v----~~i~~sp~~~~l~~--~-~dg------~I~iwd-~~~~~--~~~~~~~~~h~~~v~~-l~~s~ 690 (790)
....+. ..+ ..++|+|||+.|+. + .++ .|++|| ..++. +...+.. +...+.. ++|+|
T Consensus 296 -~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~sp 369 (723)
T 1xfd_A 296 -HEDESE---AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDE 369 (723)
T ss_dssp -EEEECS---SCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEET
T ss_pred -EEeccC---CEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec--CCeEEEeeeEEcC
Confidence 111121 233 37899999997774 3 455 577888 44444 1444432 2344554 69999
Q ss_pred CCCEEEEEEcC---CeEEEEECCCCe--EEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEe
Q 003871 691 DGKCIYVSCKS---GHVKVFDTSTLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 752 (790)
Q Consensus 691 dg~~l~sgs~d---g~i~vwd~~~~~--~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s 752 (790)
||++|+..+.+ +.+++|++.... ....+... .+| ...+. .++|+| ||++++...
T Consensus 370 dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~----~~~-~~~~~--~~~~sp-dg~~l~~~~ 428 (723)
T 1xfd_A 370 KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD----LVE-NCTYF--SASFSH-SMDFFLLKC 428 (723)
T ss_dssp TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT----SSS-SCCCC--EEEECT-TSSEEEEEC
T ss_pred CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc----ccC-CCCeE--EEEECC-CCCEEEEEc
Confidence 99999866655 789999986532 22222110 002 33456 899999 888877653
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=7.8e-21 Score=201.70 Aligned_cols=285 Identities=12% Similarity=0.041 Sum_probs=198.5
Q ss_pred EEcCCCCE-EEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-
Q 003871 448 IYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS- 523 (790)
Q Consensus 448 ~~spdg~~-l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s- 523 (790)
.|.+++++ +++.+.++.|.+||..++.. ..... .+...+ +++|+ ++++++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~--~~~~~~-~~~~s~dg~~l~~~~~ 59 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEI---------------------LNQIT--LGYDFV-DTAITSDCSNVVVTSD 59 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCE---------------------EEEEE--CCCCEE-EEEECSSSCEEEEEES
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccce---------------------eeeEE--ccCCcc-eEEEcCCCCEEEEEeC
Confidence 46666666 45556689999999876433 11111 234455 89998 77666555
Q ss_pred -CCeEEEEECCCCcE-EEEEcCCCCCeEEEEEcCCC-eEEEEeCCC---cEEEEeCCCCceEEEEcCCCCCEEEEEEeCC
Q 003871 524 -GGKISIFSLETFQT-LATFANPPPIATYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSLS 597 (790)
Q Consensus 524 -dg~I~vwd~~~~~~-~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg---~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd 597 (790)
++.|.+||..+++. ...+..+..+..+++|+|+| +++++..++ .|.+||+.+++.+..+..+ ....+++|+||
T Consensus 60 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spd 138 (331)
T 3u4y_A 60 FCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPN 138 (331)
T ss_dssp TTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTT
T ss_pred CCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCC
Confidence 78999999999987 77776666665559999999 777555553 8999999999888877654 45799999999
Q ss_pred CCEEE-EEeCCCc-EEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E-eCCcEEEEECCCCce---
Q 003871 598 LNVLV-SSGADAQ-LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH--- 670 (790)
Q Consensus 598 g~~l~-s~s~dg~-I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~I~iwd~~~~~~--- 670 (790)
|++++ ++..++. |.+|++.............+..+ ..+..++|+|+|+++++ + .++.|++||+.+++.
T Consensus 139 g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~ 213 (331)
T 3u4y_A 139 GNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG-----TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITL 213 (331)
T ss_dssp SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS-----SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred CCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC-----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccce
Confidence 98555 4456688 99999986332211111212222 46789999999997776 4 578999999999888
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeE--EEEeccccccCCCCcccccceEEEEEecCCCCE
Q 003871 671 TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLEL--RCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 747 (790)
Q Consensus 671 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~~~~~--~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~ 747 (790)
+..+.. ...+..++|+|||+++++++ .++.|.+||+.+++. +..+.... ...+....... +++|+| |+++
T Consensus 214 ~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~sp-dg~~ 286 (331)
T 3u4y_A 214 LNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGL-LIDPRPLFGAN--QMALNK-TETK 286 (331)
T ss_dssp EEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCC-CCCCGGGTTCC--CEEECT-TSSE
T ss_pred eeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccc-ccCCCCccccc--ceEECC-CCCE
Confidence 777653 46778999999999877655 478899999999987 33332110 00010011112 689999 8888
Q ss_pred EEEEe-CCCcEEEEecCCCcccc
Q 003871 748 IALGL-TNGRVHVIEPLESEVEW 769 (790)
Q Consensus 748 las~s-~Dg~i~iW~~~~~~~~w 769 (790)
|++++ .++.|.+|++..+...+
T Consensus 287 l~v~~~~~~~v~v~d~~~~~~~~ 309 (331)
T 3u4y_A 287 LFISANISRELKVFTISGKVVGY 309 (331)
T ss_dssp EEEEETTTTEEEEEETTSCEEEE
T ss_pred EEEecCCCCcEEEEEecCCcccc
Confidence 76555 56799999998876544
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=3.5e-21 Score=205.03 Aligned_cols=276 Identities=13% Similarity=0.141 Sum_probs=191.1
Q ss_pred eeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCC-CcEEEEecC--CCCcccccccccc
Q 003871 408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-ATHKLWKWQ--SNKQSLEEENVNM 484 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~d-g~i~vw~~~--~~~~~~g~~~~~~ 484 (790)
++++.|+.|++|+++. .+....+.. ..|...+.+++|+|+|++|++++.+ +.|.+|++. ++..
T Consensus 9 ~~~~~~~~v~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~--------- 74 (343)
T 1ri6_A 9 IASPESQQIHVWNLNH---EGALTLTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL--------- 74 (343)
T ss_dssp EEEGGGTEEEEEEECT---TSCEEEEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE---------
T ss_pred EeCCCCCeEEEEEECC---CCcEEEeee--EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce---------
Confidence 6668899999999963 232222111 1367789999999999999999886 999999986 2211
Q ss_pred ccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec--CCeEEEEECC---CCcEEEEEcCCCCCeEEEEEcCCC
Q 003871 485 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLE---TFQTLATFANPPPIATYFILLPQD 557 (790)
Q Consensus 485 ~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~---~~~~~~~~~~~~~~v~~l~~s~~g 557 (790)
...... .....+.+++|+ ++++++++ ++.|.+||+. +++....+.. ...+.+++|+|+|
T Consensus 75 ----------~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg 140 (343)
T 1ri6_A 75 ----------TFAAES---ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDN 140 (343)
T ss_dssp ----------EEEEEE---ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTS
T ss_pred ----------eecccc---ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCC
Confidence 011111 122378899999 77776555 7899999994 3444555543 3458899999999
Q ss_pred -eEEEEe-CCCcEEEEeCCC-CceEE----EEcC-CCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCC--Cceeeceee
Q 003871 558 -LFAFGF-DDSSILVHCPCT-KKTKA----KLKG-HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVG--WKKLCSKFL 626 (790)
Q Consensus 558 -~l~sgs-~dg~I~iwd~~~-~~~~~----~l~~-h~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~~--~~~~~~~~l 626 (790)
.+++++ .++.|++||+.+ ++... .+.. ....+.+++|+|+++++++++ .++.|.+||+.. ++......+
T Consensus 141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~ 220 (343)
T 1ri6_A 141 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL 220 (343)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeec
Confidence 777776 899999999987 65432 2332 335788999999999776554 789999999953 433222222
Q ss_pred eeeccCCCCCCCCeEEEEEeCCCCEEEE-E-eCCcEEEEECC--CC--ceeeeecCCCCCCCeEEEEEecCCCEEEEEE-
Q 003871 627 HSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP--TL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSC- 699 (790)
Q Consensus 627 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~I~iwd~~--~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs- 699 (790)
..++.++. ....+..++|+|+|++|++ + .++.|.+||+. ++ +.+..+.. ...+..++|+|+|++|++++
T Consensus 221 ~~~~~~~~-~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 221 DMMPENFS-DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT---ETQPRGFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp ECSCTTCC-SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC---SSSCCCEEECTTSSEEEEECT
T ss_pred cccCcccc-ccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC---CCccceEEECCCCCEEEEecC
Confidence 22222221 0135778999999998886 4 68899999998 33 34444433 23388999999999988887
Q ss_pred cCCeEEEE--ECCCCeEE
Q 003871 700 KSGHVKVF--DTSTLELR 715 (790)
Q Consensus 700 ~dg~i~vw--d~~~~~~~ 715 (790)
.++.|.+| |..+++..
T Consensus 297 ~~~~v~v~~~d~~~g~~~ 314 (343)
T 1ri6_A 297 KSHHISVYEIVGEQGLLH 314 (343)
T ss_dssp TTCEEEEEEEETTTTEEE
T ss_pred CCCeEEEEEEcCCCceee
Confidence 57999999 55567543
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=4.6e-22 Score=234.51 Aligned_cols=318 Identities=13% Similarity=0.072 Sum_probs=219.3
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCce--eeeeccC-------------CCCCCceEEEEE
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC--RTLLLPD-------------NSFGGRVVRLIY 449 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~--~~~~l~~-------------~~h~~~V~~l~~ 449 (790)
..+.|+ |..+ ++++.|+ | +||+.+ +.. ..+.-.. ..+...|.+++|
T Consensus 29 ~~~~w~---------g~~~----~~~~~~~-i-~~d~~t----g~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 89 (706)
T 2z3z_A 29 VGLQWM---------GDNY----VFIEGDD-L-VFNKAN----GKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLD 89 (706)
T ss_dssp TTCEEE---------TTEE----EEEETTE-E-EEEC-----------CEEEEHHHHHTTC-----------CCCEEEEE
T ss_pred CCCcCc---------CCeE----EEEeCCc-E-EEECCC----CcEeeEEeechhHhhhhccchhccccccccCceeEEE
Confidence 566775 5666 7777777 8 999974 333 2221000 001256999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEecCCeE
Q 003871 450 SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKI 527 (790)
Q Consensus 450 spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~sdg~I 527 (790)
||| ++++.+. ++.+++||+.++.. .... .+...+.+++|+ |++|+++.++.|
T Consensus 90 spd-~~~~~~~-~~~i~~~d~~~~~~---------------------~~l~---~~~~~~~~~~~SpdG~~la~~~~~~i 143 (706)
T 2z3z_A 90 AGR-GLVVLFT-QGGLVGFDMLARKV---------------------TYLF---DTNEETASLDFSPVGDRVAYVRNHNL 143 (706)
T ss_dssp TTT-TEEEEEE-TTEEEEEETTTTEE---------------------EEEE---CCTTCCTTCEECTTSSEEEEEETTEE
T ss_pred CCC-CeEEEEE-CCEEEEEECCCCce---------------------EEcc---CCcccccCCcCCCCCCEEEEEECCeE
Confidence 999 6666664 59999999865322 2211 355678889999 889998779999
Q ss_pred EEEECCC-----CcEEEEEcCCCCC--------------eEEEEEcCCC-eEEEEe------------------------
Q 003871 528 SIFSLET-----FQTLATFANPPPI--------------ATYFILLPQD-LFAFGF------------------------ 563 (790)
Q Consensus 528 ~vwd~~~-----~~~~~~~~~~~~~--------------v~~l~~s~~g-~l~sgs------------------------ 563 (790)
++||+.+ ++.......+... +.+++|+||| .|++++
T Consensus 144 ~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 223 (706)
T 2z3z_A 144 YIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL 223 (706)
T ss_dssp EEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred EEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence 9999998 7765544433332 4789999999 888887
Q ss_pred ---------CCCcEEEEeCCCCceEEEEc--CCCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCceeeceeee
Q 003871 564 ---------DDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLH 627 (790)
Q Consensus 564 ---------~dg~I~iwd~~~~~~~~~l~--~h~~~v~~l~~spdg~~l~s~s~dg-----~I~vwd~~~~~~~~~~~l~ 627 (790)
.+..|++||+.+++...... .|...+.+++|+|||++|++++.++ .|++||+.+++.. ..+.
T Consensus 224 ~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~--~~~~ 301 (706)
T 2z3z_A 224 YYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV--RTLF 301 (706)
T ss_dssp CCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE--EEEE
T ss_pred eCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee--eEEE
Confidence 44689999999887654432 4667899999999999999988776 8999999986321 1111
Q ss_pred eeccCCCCCCCCeEEEEEeC--CCCEEEEE-eCCcEEEEECC-CCceeeeecCCCCCCCeEE-EEEecCCCEEEEEEcC-
Q 003871 628 SFQTGLVPETTIVNHIQFHP--DQIHLLSI-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITY-ATYSCDGKCIYVSCKS- 701 (790)
Q Consensus 628 ~~~~~~~~~~~~v~~i~~sp--~~~~l~~~-~dg~I~iwd~~-~~~~~~~~~~~~h~~~v~~-l~~s~dg~~l~sgs~d- 701 (790)
...+......+.+++|+| ||++++++ .|+.+++|++. ++..+..+.. +...+.. ++|+|||+.|+.++.+
T Consensus 302 --~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 302 --VETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp --EEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEEEEESSS
T ss_pred --EccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEEEEecCC
Confidence 011110001346789999 99988886 67888888775 5666666653 4666776 7999999988765554
Q ss_pred C----eEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC----CcEEEEecCCCc
Q 003871 702 G----HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESE 766 (790)
Q Consensus 702 g----~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D----g~i~iW~~~~~~ 766 (790)
+ .|+.||+.+++. ..+. + ...+. +++|+| ||++++.++.+ +.|++|++.+++
T Consensus 378 ~~~~~~l~~~d~~~~~~-~~l~--------~-~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 378 SPLERHFYCIDIKGGKT-KDLT--------P-ESGMH--RTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CTTCBEEEEEETTCCCC-EESC--------C-SSSEE--EEEECT-TSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCceEEEEEEEcCCCCc-eecc--------C-CCceE--EEEECC-CCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 4 788888888763 3322 1 23455 899999 89988766443 569999998876
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=4.6e-22 Score=235.93 Aligned_cols=308 Identities=12% Similarity=0.050 Sum_probs=222.3
Q ss_pred ccccccCCC-------CC-CC-----cceeeeccCCCcccccccccCCCCCCCCCCC-----------------------
Q 003871 332 PYCINVMPN-------AN-NE-----TISLKDFPTVSNLRYASSILTDKPNQEGRPL----------------------- 375 (790)
Q Consensus 332 v~~i~fspd-------~~-d~-----~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~----------------------- 375 (790)
+.+++|||| +. |+ +|+ +||..+|+.. ..+..+..
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~--~~d~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLW--SYDIGSGQTR--------LLVDSKVVLPGTETLSDEEKARRERQRIAAM 108 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEE--EEETTTCCEE--------EEECGGGTC--------------------CC
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEE--EEECCCCcee--------Eccchhhcccccccccchhhhhhhhhhhccc
Confidence 349999999 33 66 566 9999999764 33333322
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCC---ceeeeeccCCCCCCceEEEEEcC
Q 003871 376 -DASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRLIYSH 451 (790)
Q Consensus 376 -~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~---~~~~~~l~~~~h~~~V~~l~~sp 451 (790)
.+ .+++|| |||+++ ++++. +.|.+||+.. + ....+. .|...+.+++|||
T Consensus 109 ~~v-------~~~~~S-------pDg~~l----~~~~~-~~i~~~d~~~----~~~~~~~~l~----~~~~~~~~~~~SP 161 (741)
T 2ecf_A 109 TGI-------VDYQWS-------PDAQRL----LFPLG-GELYLYDLKQ----EGKAAVRQLT----HGEGFATDAKLSP 161 (741)
T ss_dssp EES-------CCCEEC-------TTSSEE----EEEET-TEEEEEESSS----CSTTSCCBCC----CSSSCEEEEEECT
T ss_pred cCc-------ceeEEC-------CCCCEE----EEEeC-CcEEEEECCC----CCcceEEEcc----cCCcccccccCCC
Confidence 25 899999 999999 88776 9999999974 4 444433 4678899999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCC----------------CCeEEEEec
Q 003871 452 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK----------------DSISCFALR 515 (790)
Q Consensus 452 dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------------~~V~~l~~s 515 (790)
||++|++++. +.|.+||+.++.. .... ..+. ..+.+++|+
T Consensus 162 DG~~la~~~~-~~i~~~d~~~g~~---------------------~~~~--~~~~~~~~~g~~~~v~~~~~~~~~~~~~S 217 (741)
T 2ecf_A 162 KGGFVSFIRG-RNLWVIDLASGRQ---------------------MQLT--ADGSTTIGNGIAEFVADEEMDRHTGYWWA 217 (741)
T ss_dssp TSSEEEEEET-TEEEEEETTTTEE---------------------EECC--CCCCSSEEESCCCHHHHHHSCCCCSEEEC
T ss_pred CCCEEEEEeC-CcEEEEecCCCCE---------------------EEec--cCCccceeccccceeeeeccccccceEEC
Confidence 9999998874 6899999876432 1100 0111 124778999
Q ss_pred --CcEEEEec-CC---------------------------------eEEEEECCC-CcEEEEEc--CCCCCeEEEEEcCC
Q 003871 516 --GSHLFSAS-GG---------------------------------KISIFSLET-FQTLATFA--NPPPIATYFILLPQ 556 (790)
Q Consensus 516 --~~~l~s~s-dg---------------------------------~I~vwd~~~-~~~~~~~~--~~~~~v~~l~~s~~ 556 (790)
|++|++++ |+ .|.+||+.+ ++...... .+...+..++| ||
T Consensus 218 pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pD 296 (741)
T 2ecf_A 218 PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RD 296 (741)
T ss_dssp TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EE
T ss_pred CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CC
Confidence 78888876 54 789999988 77654433 36677899999 99
Q ss_pred C-eEEEEeC-----CCcEEEEeCCCCceEEEEcCCCC----CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceee
Q 003871 557 D-LFAFGFD-----DSSILVHCPCTKKTKAKLKGHQN----RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 626 (790)
Q Consensus 557 g-~l~sgs~-----dg~I~iwd~~~~~~~~~l~~h~~----~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l 626 (790)
| .|++++. +..|++||+.+++....+..+.. .+.+++|+|||+++++++.|+.+++|.+.... . .
T Consensus 297 g~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~----~-~ 371 (741)
T 2ecf_A 297 PQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG----K-A 371 (741)
T ss_dssp TTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS----C-E
T ss_pred CCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC----C-e
Confidence 9 7776553 56899999999988776665543 45689999999999999999988888776311 1 2
Q ss_pred eeeccCCCCCCCCeEEE-EEeCCCCEEEE-E-eCC--cEEEEECCC-CceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 003871 627 HSFQTGLVPETTIVNHI-QFHPDQIHLLS-I-HEG--QIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 700 (790)
Q Consensus 627 ~~~~~~~~~~~~~v~~i-~~sp~~~~l~~-~-~dg--~I~iwd~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 700 (790)
..+.. +. ..+..+ .|+|+|+.++. + .++ .+++|++.. +.....+.. ...+..++|+|||++|+....
T Consensus 372 ~~l~~-~~---~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~---~~~~~~~~~spdg~~l~~~~~ 444 (741)
T 2ecf_A 372 AALTH-GN---WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK---APGMHSASFARNASVYVDSWS 444 (741)
T ss_dssp EESCC-SS---SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC---SCSEEEEEECTTSSEEEEEEE
T ss_pred eeeee-cc---eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc---CCCceEEEECCCCCEEEEEec
Confidence 22333 33 467777 59999998876 4 444 789998864 555556543 566889999999999886654
Q ss_pred C----CeEEEEECCCCe
Q 003871 701 S----GHVKVFDTSTLE 713 (790)
Q Consensus 701 d----g~i~vwd~~~~~ 713 (790)
+ ..+++|+..++.
T Consensus 445 ~~~~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 445 NNSTPPQIELFRANGEK 461 (741)
T ss_dssp ETTEEEEEEEEETTSCE
T ss_pred CCCCCCeEEEEEcCCCe
Confidence 4 578999986543
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=1.1e-20 Score=202.21 Aligned_cols=270 Identities=13% Similarity=0.081 Sum_probs=205.1
Q ss_pred CCceEEEEEcCCCCEEEEEeC-------CCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEE
Q 003871 441 GGRVVRLIYSHSGDFLVALTQ-------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 513 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~-------dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~ 513 (790)
...+..++|+|+|+++++++. ++.|.+||..++.. ..... ....+.+++
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~---------------------~~~~~---~~~~~~~~~ 95 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV---------------------TQAIH---NDLKPFGAT 95 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE---------------------EEEEE---ESSCCCSEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE---------------------EEEEe---cCCCcceEE
Confidence 467889999999999988885 45788888765432 22111 233466788
Q ss_pred ec--CcEEEEe-c-CCeEEEEECCCCcEEEEEcCCCCC---------eEEEEEcCCC-eEEEEe--CCCcEEEEeCCCCc
Q 003871 514 LR--GSHLFSA-S-GGKISIFSLETFQTLATFANPPPI---------ATYFILLPQD-LFAFGF--DDSSILVHCPCTKK 577 (790)
Q Consensus 514 ~s--~~~l~s~-s-dg~I~vwd~~~~~~~~~~~~~~~~---------v~~l~~s~~g-~l~sgs--~dg~I~iwd~~~~~ 577 (790)
|+ +++++++ . ++.|.+||..+++.+..+..+... +.+++|+|+| .+++++ .++.|.+||..+++
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~ 175 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK 175 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc
Confidence 88 6755544 4 699999999999988888754322 6889999999 666655 57899999999999
Q ss_pred eEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--
Q 003871 578 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-- 655 (790)
Q Consensus 578 ~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-- 655 (790)
.+..+..+...+.+++|+|+|+++++++.++.|.+||..+++........ ..++. ..+..++|+|++++++++
T Consensus 176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~---~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL--DDGKE---HFFINISLDTARQRAFITDS 250 (353)
T ss_dssp EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC--CSSSC---CCEEEEEEETTTTEEEEEES
T ss_pred eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC--CCCCC---cccceEEECCCCCEEEEEeC
Confidence 98888766666889999999999999999999999999986643322211 11122 468889999999988874
Q ss_pred eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEeccccccCCCCcccccc
Q 003871 656 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 734 (790)
Q Consensus 656 ~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 734 (790)
.++.|.+||..+++.+..+... . ...++|+|+|+++++++ .++.|.+||..+++.+..+.. ...
T Consensus 251 ~~~~v~~~d~~~~~~~~~~~~~---~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---------~~~-- 315 (353)
T 3vgz_A 251 KAAEVLVVDTRNGNILAKVAAP---E-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---------PTH-- 315 (353)
T ss_dssp SSSEEEEEETTTCCEEEEEECS---S-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---------CSE--
T ss_pred CCCEEEEEECCCCcEEEEEEcC---C-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---------CCC--
Confidence 4589999999999988887642 1 25799999999776655 689999999999998877652 123
Q ss_pred eEEEEEecCCCCEEEEEeCCC
Q 003871 735 PLVIAAHPLEPNRIALGLTNG 755 (790)
Q Consensus 735 ~~~v~~sp~d~~~las~s~Dg 755 (790)
+.+++|+| +|++|+.+..++
T Consensus 316 ~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 316 PNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEECT-TSCEEEEEEECC
T ss_pred CCeEEEcC-CCCEEEEEEccc
Confidence 34999999 898777666553
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=2.2e-21 Score=229.40 Aligned_cols=322 Identities=11% Similarity=0.055 Sum_probs=220.7
Q ss_pred cccccCCC------CCCCcceeeeccCCCcccccccccCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003871 333 YCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL---DASSGDDSNDSSCFNDNNQSRESTSLPD 403 (790)
Q Consensus 333 ~~i~fspd------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~---~v~~~~~~i~~~~fs~~~~~~s~dg~~l 403 (790)
.+++|||| +.|++|+ +||..+|+.. ..+.+|.. .+ .+++|| |||+++
T Consensus 20 ~~~~~spdg~~~~~~~dg~i~--~~d~~~g~~~--------~~~~~~~~~~~~v-------~~~~~S-------pDg~~l 75 (723)
T 1xfd_A 20 PEAKWISDTEFIYREQKGTVR--LWNVETNTST--------VLIEGKKIESLRA-------IRYEIS-------PDREYA 75 (723)
T ss_dssp CCCCBSSSSCBCCCCSSSCEE--EBCGGGCCCE--------EEECTTTTTTTTC-------SEEEEC-------TTSSEE
T ss_pred cccEEcCCCcEEEEeCCCCEE--EEECCCCcEE--------EEecccccccccc-------ceEEEC-------CCCCEE
Confidence 38999999 6788888 9999999875 55666654 36 899999 999999
Q ss_pred cccceeccCC---------CceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 003871 404 ADSAVCAKSL---------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (790)
Q Consensus 404 a~~~at~s~d---------~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~ 474 (790)
++++.+ +.+.+||+.+ +....+.. ..+|...+..++|||||++|++++. +.|.+|+..++.
T Consensus 76 ----~~~~~~~~~~~~~~~~~i~~~d~~~----~~~~~l~~-~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~ 145 (723)
T 1xfd_A 76 ----LFSYNVEPIYQHSYTGYYVLSKIPH----GDPQSLDP-PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ 145 (723)
T ss_dssp ----EEEESCCCCSSSCCCSEEEEEESSS----CCCEECCC-TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC
T ss_pred ----EEEecCccceeecceeeEEEEECCC----CceEeccC-CccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc
Confidence 887664 6788999973 44443331 1245666899999999999999886 789999887644
Q ss_pred ccccccccccccccccCCCceeeeecccCCC------------------CCCeEEEEec--CcEEEEec-CC--------
Q 003871 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADP------------------KDSISCFALR--GSHLFSAS-GG-------- 525 (790)
Q Consensus 475 ~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------~~~V~~l~~s--~~~l~s~s-dg-------- 525 (790)
. .+... .+ ...+.+++|+ |+.|++++ ++
T Consensus 146 ~---------------------~~~~~--~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~ 202 (723)
T 1xfd_A 146 A---------------------IRVVS--TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL 202 (723)
T ss_dssp C---------------------EEEEC--CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred e---------------------EEEec--CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEe
Confidence 3 11000 11 1234789998 78888776 32
Q ss_pred --------------------------eEEEEECCCCcEEEEEcCC------CCCeEEEEEcCCC-eEEEEeC----CCcE
Q 003871 526 --------------------------KISIFSLETFQTLATFANP------PPIATYFILLPQD-LFAFGFD----DSSI 568 (790)
Q Consensus 526 --------------------------~I~vwd~~~~~~~~~~~~~------~~~v~~l~~s~~g-~l~sgs~----dg~I 568 (790)
.|++||+.+++....+..+ ...+..++|+||| .+++.+. +..|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i 282 (723)
T 1xfd_A 203 PTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSIL 282 (723)
T ss_dssp CCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEE
T ss_pred eccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEE
Confidence 7999999988766666654 5578999999999 7766643 3579
Q ss_pred EEEeCCCCceEEEEcC-CCCCEE----EEEEeCCCCEEEE--EeCCC------cEEEEE-CCCCceeeceeeeeeccCCC
Q 003871 569 LVHCPCTKKTKAKLKG-HQNRIT----CLAYSLSLNVLVS--SGADA------QLCVWD-AVGWKKLCSKFLHSFQTGLV 634 (790)
Q Consensus 569 ~iwd~~~~~~~~~l~~-h~~~v~----~l~~spdg~~l~s--~s~dg------~I~vwd-~~~~~~~~~~~l~~~~~~~~ 634 (790)
++||+.+++....+.. +...+. .++|+|||+.|+. +..++ .|.+|| ..++... ....+..++
T Consensus 283 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~l~~~~- 358 (723)
T 1xfd_A 283 TLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND---NIQSITSGD- 358 (723)
T ss_dssp EEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC---CCCBSCCSS-
T ss_pred EEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc---ceeEeecCC-
Confidence 9999999987666543 334333 7899999997775 45666 567777 3442200 022133233
Q ss_pred CCCCCeEE-EEEeCCCCEEEE-EeC---CcEEEEECCCCc--eeeeecCC-CCCCCeEEEEEecCCCEEEEEEcC-C--e
Q 003871 635 PETTIVNH-IQFHPDQIHLLS-IHE---GQIDVYEAPTLN--HTSQLVPD-KMDLPITYATYSCDGKCIYVSCKS-G--H 703 (790)
Q Consensus 635 ~~~~~v~~-i~~sp~~~~l~~-~~d---g~I~iwd~~~~~--~~~~~~~~-~h~~~v~~l~~s~dg~~l~sgs~d-g--~ 703 (790)
..+.. ++|+|||+.|+. +.+ +.+++|++.... ....+... .|...+..++|+|||++++..... + .
T Consensus 359 ---~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~ 435 (723)
T 1xfd_A 359 ---WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPM 435 (723)
T ss_dssp ---SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCC
T ss_pred ---eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCe
Confidence 24554 699999999986 443 779999986432 23333321 135668899999999988865443 2 3
Q ss_pred EEEEECCCCeEEEEe
Q 003871 704 VKVFDTSTLELRCQI 718 (790)
Q Consensus 704 i~vwd~~~~~~~~~~ 718 (790)
..+++..++..+..+
T Consensus 436 ~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 436 VTVHNTTDKKKMFDL 450 (723)
T ss_dssp EEEEETTTCCEEEEE
T ss_pred EEEEECCCCCEEEEe
Confidence 445676666655444
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=3.5e-20 Score=196.72 Aligned_cols=276 Identities=10% Similarity=0.027 Sum_probs=192.5
Q ss_pred CCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC-CCcEEEEecCCCCcc
Q 003871 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQS 476 (790)
Q Consensus 398 ~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~-dg~i~vw~~~~~~~~ 476 (790)
++++.+ +++++.++.|.+||... +....... .+...+ +++|+|+|+++++++. ++.|.+||..++..
T Consensus 7 ~~~~~~---~v~~~~~~~v~~~d~~~----~~~~~~~~---~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~- 74 (331)
T 3u4y_A 7 TTSNFG---IVVEQHLRRISFFSTDT----LEILNQIT---LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP- 74 (331)
T ss_dssp CCCCEE---EEEEGGGTEEEEEETTT----CCEEEEEE---CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC-
T ss_pred CCCCEE---EEEecCCCeEEEEeCcc----cceeeeEE---ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-
Confidence 445553 38899999999999973 44433221 234556 9999999998887777 88999999876432
Q ss_pred ccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-C-C--eEEEEECCCCcEEEEEcCCCCCeEE
Q 003871 477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-G--KISIFSLETFQTLATFANPPPIATY 550 (790)
Q Consensus 477 ~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-d-g--~I~vwd~~~~~~~~~~~~~~~~v~~ 550 (790)
..... ..+..+..+++|+ +++++++. + + .|.+||+.+++.+..+..+ ....+
T Consensus 75 -------------------~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~ 132 (331)
T 3u4y_A 75 -------------------KVVAI--QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVG 132 (331)
T ss_dssp -------------------EEEEE--EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEE
T ss_pred -------------------eEEec--ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccc
Confidence 01111 1244455558998 88888655 3 3 9999999999988887643 45689
Q ss_pred EEEcCCC-eEE-EEeCCCc-EEEEeCCCCceE----EEEcCCCCCEEEEEEeCCCCEEEE-EeCCCcEEEEECCCCceee
Q 003871 551 FILLPQD-LFA-FGFDDSS-ILVHCPCTKKTK----AKLKGHQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVGWKKLC 622 (790)
Q Consensus 551 l~~s~~g-~l~-sgs~dg~-I~iwd~~~~~~~----~~l~~h~~~v~~l~~spdg~~l~s-~s~dg~I~vwd~~~~~~~~ 622 (790)
++|+|+| .++ ++..++. |.+|++.....+ .........+..++|+|||+++++ +..++.|.+||+.+++..
T Consensus 133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~- 211 (331)
T 3u4y_A 133 IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI- 211 (331)
T ss_dssp EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC-
T ss_pred eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc-
Confidence 9999999 554 4556688 999998754332 111233456899999999996655 456899999999986641
Q ss_pred ceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEECCCCce--eeeecCC--CCC---CCeEEEEEecCCC
Q 003871 623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH--TSQLVPD--KMD---LPITYATYSCDGK 693 (790)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~~~~~--~~~~~~~--~h~---~~v~~l~~s~dg~ 693 (790)
..+..+..+ ..+..++|+|+|++++++ .++.|.+||+.+++. +..+... .+. .....++|+|||+
T Consensus 212 -~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 285 (331)
T 3u4y_A 212 -TLLNAVGTN-----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET 285 (331)
T ss_dssp -EEEEEEECS-----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS
T ss_pred -ceeeeccCC-----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC
Confidence 113323332 367889999999988774 567899999998877 4433321 111 2235689999999
Q ss_pred EEEEEEc-CCeEEEEECCCCeE
Q 003871 694 CIYVSCK-SGHVKVFDTSTLEL 714 (790)
Q Consensus 694 ~l~sgs~-dg~i~vwd~~~~~~ 714 (790)
+|++++. ++.|.+||+.+...
T Consensus 286 ~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 286 KLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEEETTTTEEEEEETTSCEE
T ss_pred EEEEecCCCCcEEEEEecCCcc
Confidence 8876655 57999999987653
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=5.3e-21 Score=203.10 Aligned_cols=268 Identities=12% Similarity=0.046 Sum_probs=198.8
Q ss_pred CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCC-CeEEEEec--CcEEE-Eec-CCeEE
Q 003871 454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD-SISCFALR--GSHLF-SAS-GGKIS 528 (790)
Q Consensus 454 ~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~V~~l~~s--~~~l~-s~s-dg~I~ 528 (790)
+++++++.++.|.+||..++.. ...... ++.. .+.+++|+ ++.++ ++. ++.|.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~ 59 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV---------------------DKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLV 59 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE---------------------EEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcE---------------------EEEEEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEE
Confidence 4688999999999999876432 221110 1221 47789999 65654 444 78999
Q ss_pred EEECCCCcEEEEEcCCC-----CCeEEEEEcCCC-eEEEEe------------CCCcEEEEeCCCCceEEEEcCCCCCEE
Q 003871 529 IFSLETFQTLATFANPP-----PIATYFILLPQD-LFAFGF------------DDSSILVHCPCTKKTKAKLKGHQNRIT 590 (790)
Q Consensus 529 vwd~~~~~~~~~~~~~~-----~~v~~l~~s~~g-~l~sgs------------~dg~I~iwd~~~~~~~~~l~~h~~~v~ 590 (790)
+||+.+++.+..+.... ..+.+++|+|+| .+++++ .++.|.+||+.+++.+..+.. ...+.
T Consensus 60 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~ 138 (337)
T 1pby_B 60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQIT 138 (337)
T ss_dssp EEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCC
T ss_pred EEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcc
Confidence 99999999887776321 156789999999 888775 579999999999888777764 44678
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCC----------
Q 003871 591 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEG---------- 658 (790)
Q Consensus 591 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg---------- 658 (790)
+++|+|||++++++ ++.|.+||+.+++.. ..+..+.. ...+.|+|+++.++++ .++
T Consensus 139 ~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~-----~~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 206 (337)
T 1pby_B 139 MLAWARDGSKLYGL--GRDLHVMDPEAGTLV-----EDKPIQSW-----EAETYAQPDVLAVWNQHESSGVMATPFYTAR 206 (337)
T ss_dssp CEEECTTSSCEEEE--SSSEEEEETTTTEEE-----EEECSTTT-----TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEB
T ss_pred eeEECCCCCEEEEe--CCeEEEEECCCCcEe-----eeeecccc-----CCCceeCCCccEEeeeccCCCceeeeeeccc
Confidence 89999999988887 689999999986533 21222221 1123788998877653 222
Q ss_pred -------------cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccC
Q 003871 659 -------------QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 725 (790)
Q Consensus 659 -------------~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~ 725 (790)
.|.+||+.+++.. .+....+...+.+++|+|||++++++ ++.|++||+.+++.+..+..
T Consensus 207 ~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----- 278 (337)
T 1pby_B 207 KDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL----- 278 (337)
T ss_dssp TTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-----
T ss_pred cccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-----
Confidence 4789999988875 33322346678899999999999988 79999999999988777652
Q ss_pred CCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCcccccc
Q 003871 726 PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 771 (790)
Q Consensus 726 ~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~ 771 (790)
...+. +++|+| ++++|++++.|+.|++||+.+++.....
T Consensus 279 ----~~~~~--~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 279 ----PHSYY--SVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp ----SSCCC--EEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred ----CCcee--eEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence 12345 899999 8999999999999999999998866544
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=2.6e-20 Score=197.79 Aligned_cols=271 Identities=11% Similarity=0.074 Sum_probs=200.2
Q ss_pred ceeccCCCceEeeeccccCCCCceeeeeccCCCCCC-ceEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCcccccccccc
Q 003871 407 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG-RVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNM 484 (790)
Q Consensus 407 ~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~-~V~~l~~spdg~~l~s~~-~dg~i~vw~~~~~~~~~g~~~~~~ 484 (790)
+++++.++.|.+||... ......+.+ ++.. .+..++|+|+|+++++++ .++.|.+||+.++..
T Consensus 4 ~v~~~~~~~v~~~d~~~---~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--------- 68 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEK---MAVDKVITI---ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--------- 68 (337)
T ss_dssp EEEEETTTEEEEEETTT---TEEEEEEEC---TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE---------
T ss_pred EEEcCCCCeEEEEECCC---CcEEEEEEc---CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe---------
Confidence 48999999999999973 223333332 2222 478899999998776555 478999999876433
Q ss_pred ccccccCCCceeeeecccCC---CCCCeEEEEec--CcEEEEec-------------CCeEEEEECCCCcEEEEEcCCCC
Q 003871 485 ESQLYQPSSKLVMTNDIAAD---PKDSISCFALR--GSHLFSAS-------------GGKISIFSLETFQTLATFANPPP 546 (790)
Q Consensus 485 ~~~i~~~~~~~~~~~~~~~~---~~~~V~~l~~s--~~~l~s~s-------------dg~I~vwd~~~~~~~~~~~~~~~ 546 (790)
........ +...+.+++|+ |+++++++ ++.|.+||+.+++....+.. ..
T Consensus 69 ------------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~ 135 (337)
T 1pby_B 69 ------------LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR 135 (337)
T ss_dssp ------------EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred ------------EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence 11110000 12256678998 77887773 58999999999988887764 44
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC-----------------
Q 003871 547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA----------------- 608 (790)
Q Consensus 547 ~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg----------------- 608 (790)
.+.+++|+|+| .++++ ++.|++||+.+++....+..+.. ...+.|+||++.++.++.++
T Consensus 136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccc
Confidence 57789999999 77777 68999999999988877765431 11237899998766544332
Q ss_pred -------cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCC
Q 003871 609 -------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDL 681 (790)
Q Consensus 609 -------~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~ 681 (790)
.|.+||+.+++.. ... +. .+. ..+.+++|+|+|++++++ ++.|++||+.+++.+..+.. ..
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~-~~~---~~-~~~---~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~---~~ 280 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMA-MRE---VR-IMD---VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL---PH 280 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEE-EEE---EE-ECS---SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC---SS
T ss_pred cccccccceEEEeCCCCCce-Eee---cC-CCC---CceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC---CC
Confidence 4689999987643 111 11 222 468899999999999988 78999999999988877754 45
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecc
Q 003871 682 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 720 (790)
Q Consensus 682 ~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~ 720 (790)
.+.+++|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus 281 ~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 281 SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 678999999999999999999999999999998888764
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=4.3e-20 Score=196.57 Aligned_cols=269 Identities=12% Similarity=0.087 Sum_probs=185.4
Q ss_pred CEEEEE-eCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-C-CeEE
Q 003871 454 DFLVAL-TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-GKIS 528 (790)
Q Consensus 454 ~~l~s~-~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-d-g~I~ 528 (790)
++++++ +.|+.|.+|++..... ....... .+...+.+++|+ ++++++++ + +.|.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~------------------~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 63 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGA------------------LTLTQVV---DVPGQVQPMVVSPDKRYLYVGVRPEFRVL 63 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSC------------------EEEEEEE---ECSSCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCc------------------EEEeeeE---ecCCCCceEEECCCCCEEEEeecCCCeEE
Confidence 345554 6699999999853111 0011111 366778889999 78787777 4 8999
Q ss_pred EEECC--CCc--EEEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCcEEEEeCC---CCceEEEEcCCCCCEEEEEEeCCCC
Q 003871 529 IFSLE--TFQ--TLATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPC---TKKTKAKLKGHQNRITCLAYSLSLN 599 (790)
Q Consensus 529 vwd~~--~~~--~~~~~~~~~~~v~~l~~s~~g-~l~sgs-~dg~I~iwd~~---~~~~~~~l~~h~~~v~~l~~spdg~ 599 (790)
+|++. +++ .+..+..+. .+..++|+|+| .+++++ .++.|.+||+. +++....+..+ ..+.+++|+|+|+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~ 141 (343)
T 1ri6_A 64 AYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNR 141 (343)
T ss_dssp EEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSS
T ss_pred EEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCC
Confidence 99997 554 344454434 77899999999 676655 48899999994 34455555544 4588999999999
Q ss_pred EEEEEe-CCCcEEEEECCC-Cceeece--eeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E-eCCcEEEEECCC--Cce-
Q 003871 600 VLVSSG-ADAQLCVWDAVG-WKKLCSK--FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT--LNH- 670 (790)
Q Consensus 600 ~l~s~s-~dg~I~vwd~~~-~~~~~~~--~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~I~iwd~~~--~~~- 670 (790)
++++++ .++.|.+||+.+ ++..... ... ...+ ..+.+++|+|+++++++ + .++.|.+||+.. ++.
T Consensus 142 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 142 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVT-TVEG-----AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE-CSTT-----CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred EEEEecCCCCEEEEEEecCCCceeeecccccc-cCCC-----CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 888877 899999999987 5432211 111 1111 46889999999998776 4 688999999953 432
Q ss_pred -eeeecC--CC--CCCCeEEEEEecCCCEEEEEE-cCCeEEEEECC--CCe--EEEEeccccccCCCCcccccceEEEEE
Q 003871 671 -TSQLVP--DK--MDLPITYATYSCDGKCIYVSC-KSGHVKVFDTS--TLE--LRCQINLTAYAQPGTISLELYPLVIAA 740 (790)
Q Consensus 671 -~~~~~~--~~--h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~--~~~--~~~~~~~~~~~~~gh~~~~v~~~~v~~ 740 (790)
...+.. .. ....+..++|+|+|++|+++. .++.|++||+. ++. .+..+.. + . .+. +++|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-------~-~-~~~--~~~~ 284 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-------E-T-QPR--GFNV 284 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-------S-S-SCC--CEEE
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC-------C-C-ccc--eEEE
Confidence 222221 11 134677899999999887544 78999999998 333 3333321 1 2 244 8999
Q ss_pred ecCCCCEEEEEe-CCCcEEEEecC
Q 003871 741 HPLEPNRIALGL-TNGRVHVIEPL 763 (790)
Q Consensus 741 sp~d~~~las~s-~Dg~i~iW~~~ 763 (790)
+| ++++|++++ .|+.|.+|++.
T Consensus 285 s~-dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 285 DH-SGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CT-TSSEEEEECTTTCEEEEEEEE
T ss_pred CC-CCCEEEEecCCCCeEEEEEEc
Confidence 99 899888877 68999999554
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=9.2e-21 Score=223.39 Aligned_cols=315 Identities=10% Similarity=0.010 Sum_probs=203.6
Q ss_pred ccccCccccchhhh-hhhhccC-----------------CCccccccccCCC-----CCCCcceeeeccCCCcccccccc
Q 003871 307 DKLKFPSMDKSRLL-SLIKQIM-----------------DWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSI 363 (790)
Q Consensus 307 ~~i~iwd~~~~~~~-~~l~~h~-----------------~~v~v~~i~fspd-----~~d~~i~l~iwd~~~g~~~~~~~ 363 (790)
+ | +||+.+++.+ ..+..|. ..+. +++|||| +.++.++ +||+.+++..
T Consensus 45 ~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~--~~~~spd~~~~~~~~~~i~--~~d~~~~~~~---- 114 (706)
T 2z3z_A 45 D-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSF--RTLDAGRGLVVLFTQGGLV--GFDMLARKVT---- 114 (706)
T ss_dssp E-E-EEEC-------CEEEEHHHHHTTC-----------CCCE--EEEETTTTEEEEEETTEEE--EEETTTTEEE----
T ss_pred c-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCce--eEEECCCCeEEEEECCEEE--EEECCCCceE----
Confidence 5 6 8888888773 3332222 2344 9999998 6678888 9999988763
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeecccc-CCCCceeeeeccCCCCCC
Q 003871 364 LTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLI-NEPSECRTLLLPDNSFGG 442 (790)
Q Consensus 364 ~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~-~~~~~~~~~~l~~~~h~~ 442 (790)
.+..+...+ .+++|| |||+.+ +++ .|+.|++|++... ...+....+.. .+..
T Consensus 115 -----~l~~~~~~~-------~~~~~S-------pdG~~l----a~~-~~~~i~v~~~~~~~~~~g~~~~~~~---~~~~ 167 (706)
T 2z3z_A 115 -----YLFDTNEET-------ASLDFS-------PVGDRV----AYV-RNHNLYIARGGKLGEGMSRAIAVTI---DGTE 167 (706)
T ss_dssp -----EEECCTTCC-------TTCEEC-------TTSSEE----EEE-ETTEEEEEECBCTTSCCCCCEESCS---CCBT
T ss_pred -----EccCCcccc-------cCCcCC-------CCCCEE----EEE-ECCeEEEEecCcccccCCCcEEecc---CCCC
Confidence 344566667 899999 999999 774 6799999999730 00044443321 1222
Q ss_pred c--------------eEEEEEcCCCCEEEEEeCC-CcEEEEec---CCCCc--------cccccccccccccccCCCcee
Q 003871 443 R--------------VVRLIYSHSGDFLVALTQT-ATHKLWKW---QSNKQ--------SLEEENVNMESQLYQPSSKLV 496 (790)
Q Consensus 443 ~--------------V~~l~~spdg~~l~s~~~d-g~i~vw~~---~~~~~--------~~g~~~~~~~~~i~~~~~~~~ 496 (790)
. +.+++|||||++|++++.| ..+..+.+ ..... ..|.........+|+..++..
T Consensus 168 ~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~ 247 (706)
T 2z3z_A 168 TLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT 247 (706)
T ss_dssp TEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred CeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence 2 5889999999999998732 11111111 00000 001111112234555555554
Q ss_pred eeecccCCCCCCeEEEEec--CcEEEEec-CC-----eEEEEECCCCcEEEEEc--CCC---CCeEEEEEcC--CC-eEE
Q 003871 497 MTNDIAADPKDSISCFALR--GSHLFSAS-GG-----KISIFSLETFQTLATFA--NPP---PIATYFILLP--QD-LFA 560 (790)
Q Consensus 497 ~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg-----~I~vwd~~~~~~~~~~~--~~~---~~v~~l~~s~--~g-~l~ 560 (790)
........+...+.+++|+ |+.|++++ ++ .|.+||+.+++....+. .+. ..+.+++|+| +| +++
T Consensus 248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~ 327 (706)
T 2z3z_A 248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW 327 (706)
T ss_dssp EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEE
T ss_pred EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEE
Confidence 4433222467789999999 88888766 54 89999999984433332 122 1246789999 99 999
Q ss_pred EEeCCCcEEEEeCC-CCceEEEEcCCCCCEEE-EEEeCCCCEEEEEeCC-C----cEEEEECCCCceeeceeeeeeccCC
Q 003871 561 FGFDDSSILVHCPC-TKKTKAKLKGHQNRITC-LAYSLSLNVLVSSGAD-A----QLCVWDAVGWKKLCSKFLHSFQTGL 633 (790)
Q Consensus 561 sgs~dg~I~iwd~~-~~~~~~~l~~h~~~v~~-l~~spdg~~l~s~s~d-g----~I~vwd~~~~~~~~~~~l~~~~~~~ 633 (790)
+++.|+.+++|++. ++..+..+..|...+.+ ++|+|||+.|+.++.+ + .|..||+.+++. ..+. +
T Consensus 328 ~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~------~~l~--~ 399 (706)
T 2z3z_A 328 QSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT------KDLT--P 399 (706)
T ss_dssp EECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC------EESC--C
T ss_pred EEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc------eecc--C
Confidence 99999999999876 66777788888888877 7999999987765544 3 677777776431 1122 2
Q ss_pred CCCCCCeEEEEEeCCCCEEEEE-eC----CcEEEEECCCCc
Q 003871 634 VPETTIVNHIQFHPDQIHLLSI-HE----GQIDVYEAPTLN 669 (790)
Q Consensus 634 ~~~~~~v~~i~~sp~~~~l~~~-~d----g~I~iwd~~~~~ 669 (790)
. ..+.+++|+|||++++.+ .+ +.|++||+.+++
T Consensus 400 ~---~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 400 E---SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp S---SSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred C---CceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 2 468999999999998873 32 459999998877
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=9.8e-20 Score=194.86 Aligned_cols=265 Identities=11% Similarity=0.022 Sum_probs=198.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccC-------CCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEE
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKS-------LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV 457 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~-------d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~ 457 (790)
..++|+ |||+.+ ++++. ++.|.+||... ......+. ....+..++|+|+|++++
T Consensus 44 ~~~~~s-------~dg~~l----~~~~~~~~~~~~~~~v~~~d~~~---~~~~~~~~-----~~~~~~~~~~s~dg~~l~ 104 (353)
T 3vgz_A 44 YEMAYS-------QQENAL----WLATSQSRKLDKGGVVYRLDPVT---LEVTQAIH-----NDLKPFGATINNTTQTLW 104 (353)
T ss_dssp EEEEEE-------TTTTEE----EEEECCCTTTEESEEEEEECTTT---CCEEEEEE-----ESSCCCSEEEETTTTEEE
T ss_pred cceEEC-------CCCCEE----EEEcCCCcCCCCCccEEEEcCCC---CeEEEEEe-----cCCCcceEEECCCCCEEE
Confidence 678898 999988 66553 56899999974 22333333 234578899999999776
Q ss_pred EEeC-CCcEEEEecCCCCccccccccccccccccCCCceeeeecccC------CCCCCeEEEEec--CcEEEEec---CC
Q 003871 458 ALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA------DPKDSISCFALR--GSHLFSAS---GG 525 (790)
Q Consensus 458 s~~~-dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~V~~l~~s--~~~l~s~s---dg 525 (790)
+++. ++.|.+||..++.. ........ .....+.+++|+ ++++++++ ++
T Consensus 105 v~~~~~~~v~~~d~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 164 (353)
T 3vgz_A 105 FGNTVNSAVTAIDAKTGEV--------------------KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKES 164 (353)
T ss_dssp EEETTTTEEEEEETTTCCE--------------------EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSC
T ss_pred EEecCCCEEEEEeCCCCee--------------------EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCc
Confidence 6655 78999999876543 01100000 011236889998 67666554 68
Q ss_pred eEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcC----CCCCEEEEEEeCCCCE
Q 003871 526 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLSLNV 600 (790)
Q Consensus 526 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~----h~~~v~~l~~spdg~~ 600 (790)
.|.+||..+++....+..+...+.+++|+|+| .+++++.++.|.+||..+++....+.. +...+.+++|+|+|++
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 244 (353)
T 3vgz_A 165 VIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQR 244 (353)
T ss_dssp EEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTE
T ss_pred eEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCE
Confidence 89999999999988887566668899999999 899999999999999999988877754 5567889999999998
Q ss_pred EEEEeC-CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E-eCCcEEEEECCCCceeeeecCC
Q 003871 601 LVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPD 677 (790)
Q Consensus 601 l~s~s~-dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~I~iwd~~~~~~~~~~~~~ 677 (790)
+++++. ++.|.+||..+++.... +..+ ....++|+|+|+++++ + .++.|.+||..+++.+..+..
T Consensus 245 l~~~~~~~~~v~~~d~~~~~~~~~-----~~~~------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~- 312 (353)
T 3vgz_A 245 AFITDSKAAEVLVVDTRNGNILAK-----VAAP------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT- 312 (353)
T ss_dssp EEEEESSSSEEEEEETTTCCEEEE-----EECS------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-
T ss_pred EEEEeCCCCEEEEEECCCCcEEEE-----EEcC------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-
Confidence 776665 58999999998654322 2222 2256999999997776 4 589999999999998888754
Q ss_pred CCCCCeEEEEEecCCCEEEEEEcCC
Q 003871 678 KMDLPITYATYSCDGKCIYVSCKSG 702 (790)
Q Consensus 678 ~h~~~v~~l~~s~dg~~l~sgs~dg 702 (790)
...+.+++|+|||++|+++..++
T Consensus 313 --~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 313 --PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp --CSEEEEEEECTTSCEEEEEEECC
T ss_pred --CCCCCeEEEcCCCCEEEEEEccc
Confidence 45789999999999888776654
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=1.7e-19 Score=192.84 Aligned_cols=276 Identities=13% Similarity=0.058 Sum_probs=179.9
Q ss_pred ccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC---CCcEEEEecCCCCcccccccccccc
Q 003871 410 AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKWQSNKQSLEEENVNMES 486 (790)
Q Consensus 410 ~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~---dg~i~vw~~~~~~~~~g~~~~~~~~ 486 (790)
++.++.|.+|+++. +++....+... .+...+..++|+|||+ |++++. ++.|.+|++.++.
T Consensus 12 ~~~~~~i~v~~~d~--~tg~~~~~~~~--~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~------------ 74 (347)
T 3hfq_A 12 KKTSQGIYQGTLDT--TAKTLTNDGLL--AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT------------ 74 (347)
T ss_dssp SSSCCEEEEEEEET--TTTEEEEEEEE--EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE------------
T ss_pred CCCCCCEEEEEEcC--CCCeEEEeeee--eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc------------
Confidence 34567889998874 23444332221 2456778899999999 666654 4677777653211
Q ss_pred ccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEe-C
Q 003871 487 QLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF-D 564 (790)
Q Consensus 487 ~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs-~ 564 (790)
.+.+..+..+...+..++|+|+| .+++++ .
T Consensus 75 ------------------------------------------------~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~ 106 (347)
T 3hfq_A 75 ------------------------------------------------AHKLNTVVAPGTPPAYVAVDEARQLVYSANYH 106 (347)
T ss_dssp ------------------------------------------------EEEEEEEEEESCCCSEEEEETTTTEEEEEETT
T ss_pred ------------------------------------------------EEEeeeeecCCCCCEEEEECCCCCEEEEEeCC
Confidence 01222323345567889999999 777777 7
Q ss_pred CCcEEEEeCC-CCc--eEEEEcC---------CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC-CCceeeceeeeeecc
Q 003871 565 DSSILVHCPC-TKK--TKAKLKG---------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQT 631 (790)
Q Consensus 565 dg~I~iwd~~-~~~--~~~~l~~---------h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~-~~~~~~~~~l~~~~~ 631 (790)
++.|.+|++. ++. .+..+.. +...+.+++|+|||+.+++...++.|.+||+. +++......+. ...
T Consensus 107 ~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~ 185 (347)
T 3hfq_A 107 KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT-MEA 185 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE-CCT
T ss_pred CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE-cCC
Confidence 7899999995 332 2333321 12348899999999966666778899999998 44322211111 112
Q ss_pred CCCCCCCCeEEEEEeCCCCEEEE-E-eCCcEEEEECCC--Cce--eeeecCCCC----CCCeEEEEEecCCCEEE-EEEc
Q 003871 632 GLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT--LNH--TSQLVPDKM----DLPITYATYSCDGKCIY-VSCK 700 (790)
Q Consensus 632 ~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~I~iwd~~~--~~~--~~~~~~~~h----~~~v~~l~~s~dg~~l~-sgs~ 700 (790)
+ ..+..++|+|||+++++ + .++.|.+|++.. ++. +..+..... ...+..++|+|||++|+ ++..
T Consensus 186 g-----~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~ 260 (347)
T 3hfq_A 186 G-----FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG 260 (347)
T ss_dssp T-----CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET
T ss_pred C-----CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC
Confidence 2 36788999999998777 4 678899999874 443 222221111 14588999999999885 5556
Q ss_pred CCeEEEEECCC-C--eEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC-CcEEEE--ecCCCcc
Q 003871 701 SGHVKVFDTST-L--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVI--EPLESEV 767 (790)
Q Consensus 701 dg~i~vwd~~~-~--~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D-g~i~iW--~~~~~~~ 767 (790)
++.|.+|++.. + +.+..+.. + ...+. +++|+| ||++|++++.+ +.|.+| +..+|+.
T Consensus 261 ~~~v~v~~~~~~g~~~~~~~~~~-------~-~~~~~--~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 261 YNTLAVFAVTADGHLTLIQQIST-------E-GDFPR--DFDLDP-TEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp TTEEEEEEECGGGCEEEEEEEEC-------S-SSCCC--EEEECT-TSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred CCEEEEEEECCCCcEEEeEEEec-------C-CCCcC--eEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 89999999973 3 33333321 1 22344 899999 89988887754 899999 5555653
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=7.2e-20 Score=190.01 Aligned_cols=254 Identities=8% Similarity=-0.030 Sum_probs=181.0
Q ss_pred eeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCC-CCcccccccccccc
Q 003871 408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS-NKQSLEEENVNMES 486 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~-~~~~~g~~~~~~~~ 486 (790)
.+++.|++|++||+. ++....+. .|...|.+++|+|+|++|++++ ++.|.+||+.+ +..
T Consensus 16 ~~~~~~~~i~~~d~~----~~~~~~~~----~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~----------- 75 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIR----TRKMRVVW----QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP----------- 75 (297)
T ss_dssp --CCCCEEEEEEETT----TTEEEEEE----EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-----------
T ss_pred CCCCcceeEEEEeCC----CCceeeec----cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-----------
Confidence 455678999999997 35544433 4788999999999999998876 78999999876 433
Q ss_pred ccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-C----CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-e
Q 003871 487 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G----GKISIFSLETFQTLATFANPPPIATYFILLPQD-L 558 (790)
Q Consensus 487 ~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-d----g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~ 558 (790)
... ....+...+.+++|+ ++++++++ + ..|..|+..+++ ...+..+ ..+..++|+|++ .
T Consensus 76 ----------~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~ 142 (297)
T 2ojh_A 76 ----------EKV-DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKS 142 (297)
T ss_dssp ----------EEC-CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSE
T ss_pred ----------eEe-ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCE
Confidence 111 111234678889999 88888877 2 345555555554 3444433 348899999999 6
Q ss_pred EE-EEeCCCcEEEEeCCC-CceEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeceeeeeeccCCCC
Q 003871 559 FA-FGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 635 (790)
Q Consensus 559 l~-sgs~dg~I~iwd~~~-~~~~~~l~~h~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~ 635 (790)
++ +++.++.+.+|++.. +.....+..|...+.+++|+|+|+++++++ .++.+++|++.... ..+..+. .+.
T Consensus 143 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~----~~~~~~~-~~~- 216 (297)
T 2ojh_A 143 FTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG----SSVERIT-DSA- 216 (297)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS----SCEEECC-CCS-
T ss_pred EEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC----CCcEEEe-cCC-
Confidence 55 788899899988532 233456667888999999999999888766 58999999886211 1222122 233
Q ss_pred CCCCeEEEEEeCCCCEEEEE-eC-----------CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC
Q 003871 636 ETTIVNHIQFHPDQIHLLSI-HE-----------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 702 (790)
Q Consensus 636 ~~~~v~~i~~sp~~~~l~~~-~d-----------g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg 702 (790)
..+.+++|+|+|++|+++ .+ +.|++||+.+++.........|...+.+++|+|+|++|++++.+.
T Consensus 217 --~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 217 --YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred --cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 478899999999999874 43 469999998877644332223567899999999999999887654
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=7.5e-19 Score=189.02 Aligned_cols=276 Identities=12% Similarity=0.107 Sum_probs=185.0
Q ss_pred cCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCC----CcEEEEecCCCCcccccccccccc
Q 003871 411 KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKWQSNKQSLEEENVNMES 486 (790)
Q Consensus 411 s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~d----g~i~vw~~~~~~~~~g~~~~~~~~ 486 (790)
+.++.|.+|+++. +++....+.. .+...+..++|+|||++|++++.+ +.+.+|++...
T Consensus 24 ~~~~~i~~~~~d~--~~g~~~~~~~---~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~------------- 85 (361)
T 3scy_A 24 GNSKGIYTFRFNE--ETGESLPLSD---AEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE------------- 85 (361)
T ss_dssp SSCCEEEEEEEET--TTCCEEEEEE---EECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT-------------
T ss_pred CCCCCEEEEEEeC--CCCCEEEeec---ccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC-------------
Confidence 4568899999863 2344444332 146778889999999999999886 79999987642
Q ss_pred ccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec--CCeEEEEECCCCcEEEE------EcC--------CCCCeEE
Q 003871 487 QLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS--GGKISIFSLETFQTLAT------FAN--------PPPIATY 550 (790)
Q Consensus 487 ~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s--dg~I~vwd~~~~~~~~~------~~~--------~~~~v~~ 550 (790)
++.+........+...+..+++.++++++++ ++.|.+|++.....+.. ..+ +...+.+
T Consensus 86 ------~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 159 (361)
T 3scy_A 86 ------KGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHC 159 (361)
T ss_dssp ------TTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEE
T ss_pred ------CCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceE
Confidence 1222111111124456677777766666665 78999999975432211 111 1224578
Q ss_pred EEEcCCC-eEEEEe-CCCcEEEEeCCCCc-------e------EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEE
Q 003871 551 FILLPQD-LFAFGF-DDSSILVHCPCTKK-------T------KAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWD 614 (790)
Q Consensus 551 l~~s~~g-~l~sgs-~dg~I~iwd~~~~~-------~------~~~l~~h~~~v~~l~~spdg~~l~s~s-~dg~I~vwd 614 (790)
++|+|+| ++++++ .++.|.+|++.... . ......+...+..++|+|||+++++++ .++.|.+||
T Consensus 160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 239 (361)
T 3scy_A 160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFR 239 (361)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEE
Confidence 9999999 665554 57899999887543 1 111223445688999999999887777 689999999
Q ss_pred CCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--e-CCcEEEEECC--CCc--eeeeecCCCCCCCeEEEE
Q 003871 615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-EGQIDVYEAP--TLN--HTSQLVPDKMDLPITYAT 687 (790)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~-dg~I~iwd~~--~~~--~~~~~~~~~h~~~v~~l~ 687 (790)
+.+++......+..... +. .....++|+|||++|+++ . ++.|.+|++. +++ .+..+.. ...+..++
T Consensus 240 ~~~g~~~~~~~~~~~~~-~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~ 312 (361)
T 3scy_A 240 YADGMLDEIQTVAADTV-NA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT---GIHPRNFI 312 (361)
T ss_dssp EETTEEEEEEEEESCSS-CC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---SSCCCEEE
T ss_pred ecCCceEEeEEEecCCC-CC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---CCCCceEE
Confidence 98765432222321222 11 356899999999999774 3 5789999985 455 3334432 45678999
Q ss_pred EecCCCEEEEEE-cCCeEEEEE--CCCCeEEEE
Q 003871 688 YSCDGKCIYVSC-KSGHVKVFD--TSTLELRCQ 717 (790)
Q Consensus 688 ~s~dg~~l~sgs-~dg~i~vwd--~~~~~~~~~ 717 (790)
|+|||++|++++ .++.|.+|+ ..+|++...
T Consensus 313 ~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 313 ITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp ECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred ECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 999999998887 578999965 457765543
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=5.2e-20 Score=191.10 Aligned_cols=251 Identities=10% Similarity=0.019 Sum_probs=183.0
Q ss_pred eCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEecCCeEEEEECCC-Cc
Q 003871 460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLET-FQ 536 (790)
Q Consensus 460 ~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~sdg~I~vwd~~~-~~ 536 (790)
+.++.|++||+.++.. .... .|...|.+++|+ ++++++++++.|.+||+.+ ++
T Consensus 19 ~~~~~i~~~d~~~~~~---------------------~~~~---~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~ 74 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKM---------------------RVVW---QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPS 74 (297)
T ss_dssp CCCEEEEEEETTTTEE---------------------EEEE---EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCS
T ss_pred CcceeEEEEeCCCCce---------------------eeec---cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCC
Confidence 4578999998765432 2111 377899999999 8899998899999999998 87
Q ss_pred EEEEEcCC-CCCeEEEEEcCCC-eEEEEeC--CC--cEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEE-EEeCCCc
Q 003871 537 TLATFANP-PPIATYFILLPQD-LFAFGFD--DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQ 609 (790)
Q Consensus 537 ~~~~~~~~-~~~v~~l~~s~~g-~l~sgs~--dg--~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~-s~s~dg~ 609 (790)
.......+ ...+.+++|+|+| .+++++. ++ .|..++..+++ ...+..+. .+..++|+||+++++ +++.|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~ 152 (297)
T 2ojh_A 75 PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQV 152 (297)
T ss_dssp CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTE
T ss_pred ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCc
Confidence 77666555 3678899999999 8888883 33 45555655554 34454443 489999999999887 7788999
Q ss_pred EEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E-eCCcEEEEECC-CCceeeeecCCCCCCCeEEE
Q 003871 610 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITYA 686 (790)
Q Consensus 610 I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~I~iwd~~-~~~~~~~~~~~~h~~~v~~l 686 (790)
+++|++.... .....+. .+. ..+.+++|+|+++++++ + .++.+.+|++. .+..+..+.. +...+..+
T Consensus 153 ~~l~~~~~~~----~~~~~~~-~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~ 222 (297)
T 2ojh_A 153 FDIYSMDIDS----GVETRLT-HGE---GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD--SAYGDWFP 222 (297)
T ss_dssp EEEEEEETTT----CCEEECC-CSS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC--CSEEEEEE
T ss_pred eEEEEEECCC----CcceEcc-cCC---CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec--CCcccCCe
Confidence 9999864311 1112122 222 57999999999998887 4 48889999876 4555555543 46788999
Q ss_pred EEecCCCEEEEEEcC-----------CeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCC
Q 003871 687 TYSCDGKCIYVSCKS-----------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 755 (790)
Q Consensus 687 ~~s~dg~~l~sgs~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg 755 (790)
+|+|+|++|++++.+ +.|++||+.+++........ +| ...+. +++|+| ++++|++++.|.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-----~~-~~~~~--~~~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF-----GG-QGTMN--SPNWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE-----ES-TTTSC--SCCBCT-TSSEEEEEEECC
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC-----CC-Ccccc--cceECC-CCCEEEEEEecc
Confidence 999999999988876 56999999998764443211 23 33556 889999 899988887654
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=1.9e-18 Score=190.28 Aligned_cols=311 Identities=12% Similarity=0.081 Sum_probs=197.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcE
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 518 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~ 518 (790)
...+..+++++++.++++++.++ +++|+........... .....+........ ..+...|.+++|+ +++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~v~~l~~spdg~~ 106 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG--DDPNKIVDKVQGLL------VPMKFPIHHLALSCDNLT 106 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT--CCTTCEEECCCCEE------ECCSSCEEEEEECTTSCE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc--cCcccccccCcccc------ccCCCcccEEEEcCCCCE
Confidence 34678899999999999999888 8888764311100000 00000000000000 1367789999999 888
Q ss_pred EE----Eec-CCeEEEEECCCC--------c---EEEEEcCCCCCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCceEE
Q 003871 519 LF----SAS-GGKISIFSLETF--------Q---TLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKA 580 (790)
Q Consensus 519 l~----s~s-dg~I~vwd~~~~--------~---~~~~~~~~~~~v~~l~~s~~-g-~l~sgs~dg~I~iwd~~~~~~~~ 580 (790)
|+ +++ |+.|++||+.++ + ....+.+|...|.+++|+|+ + ++++|+.||+|++||++++....
T Consensus 107 lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~ 186 (434)
T 2oit_A 107 LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC 186 (434)
T ss_dssp EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE
T ss_pred EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee
Confidence 88 677 899999998764 2 24455678899999999998 5 99999999999999999987776
Q ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeee-eccCCCCCCCCeEEEEEeCCCCEEEE-E-eC
Q 003871 581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLS-I-HE 657 (790)
Q Consensus 581 ~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~-~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~d 657 (790)
...+|...|++++|+|+|++|++|+.||+|++||++ ++......... ....|. ..+.+++|++++.++++ + .+
T Consensus 187 ~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~---~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 187 ATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHP---VRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp EEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSC---EEEEEEEEEETTEEEEEEEETT
T ss_pred eccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCc---eeEEEEEEecCceEEEEEccCC
Confidence 777799999999999999999999999999999998 32221111110 001122 47999999999988876 2 44
Q ss_pred Cc------EEEEECCCCc-----eeeeecCC-----CCCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCe--E-EEE
Q 003871 658 GQ------IDVYEAPTLN-----HTSQLVPD-----KMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLE--L-RCQ 717 (790)
Q Consensus 658 g~------I~iwd~~~~~-----~~~~~~~~-----~h~~~v~~l~~s~dg~~l~sgs~-dg~i~vwd~~~~~--~-~~~ 717 (790)
|. +++||+.+.+ ....+... ....+-..+.+-++.+++++++. .+.|.+....... . ...
T Consensus 263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~ 342 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWL 342 (434)
T ss_dssp CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEE
T ss_pred CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEe
Confidence 32 8999998642 11222110 11223333444478787776655 4556666654321 1 111
Q ss_pred ec--cccccCCCCcccccceEEEEEe--cC------------CCCEEEEEeCCCcEEEEecCC
Q 003871 718 IN--LTAYAQPGTISLELYPLVIAAH--PL------------EPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 718 ~~--~~~~~~~gh~~~~v~~~~v~~s--p~------------d~~~las~s~Dg~i~iW~~~~ 764 (790)
+. ....+|..-.+....++++++. .. --..|.+-+.||.+..|.+..
T Consensus 343 ~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 343 LEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp ECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 11 0111221111223334444442 11 125788888999999998765
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=3.2e-19 Score=190.72 Aligned_cols=290 Identities=8% Similarity=-0.009 Sum_probs=189.0
Q ss_pred CCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccC---CCceEee
Q 003871 343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKS---LEKSVNL 419 (790)
Q Consensus 343 d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~---d~~i~iw 419 (790)
++.|.+|.||..+|+... .....+...+ ..++|+ |||+ + ++++. ++.|.+|
T Consensus 15 ~~~i~v~~~d~~tg~~~~-------~~~~~~~~~p-------~~~a~s-------pdg~-l----~~~~~~~~~~~v~~~ 68 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTN-------DGLLAATQNP-------TYLALS-------AKDC-L----YSVDKEDDEGGIAAW 68 (347)
T ss_dssp CCEEEEEEEETTTTEEEE-------EEEEEECSCC-------CCEEEC-------TTCE-E----EEEEEETTEEEEEEE
T ss_pred CCCEEEEEEcCCCCeEEE-------eeeeeccCCc-------ceEEEc-------cCCe-E----EEEEecCCCceEEEE
Confidence 567887888888887531 1223344555 789999 9999 6 44443 6899999
Q ss_pred eccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCccccccccccccccccCCCceeee
Q 003871 420 KLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT 498 (790)
Q Consensus 420 d~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~-~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~ 498 (790)
++. .+....+... ..+...+..++|+|||++|++++ .++.+.+|++..... ...
T Consensus 69 ~~~----~g~~~~~~~~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~--------------------~~~ 123 (347)
T 3hfq_A 69 QID----GQTAHKLNTV-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA--------------------LTL 123 (347)
T ss_dssp EEE----TTEEEEEEEE-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC--------------------EEE
T ss_pred Eec----CCcEEEeeee-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC--------------------eee
Confidence 996 3433222110 12567788999999999999888 578999998753111 000
Q ss_pred ecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC-CC
Q 003871 499 NDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-TK 576 (790)
Q Consensus 499 ~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~-~~ 576 (790)
+...... +.-.. .......+.+++|+|+| .++++..++.|++|++. ++
T Consensus 124 ----------------------------~~~~~~~-~~~p~-~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 124 ----------------------------TDTVQHS-GHGPR-PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ----------------------------EEEEECC-CCCSS-TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred ----------------------------cceeecC-CCCCC-ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 0000000 00000 01133458899999999 88888888999999998 55
Q ss_pred ceE--EEEcCC-CCCEEEEEEeCCCCEEEE-EeCCCcEEEEECCC--CceeeceeeeeeccCCCCCCCCeEEEEEeCCCC
Q 003871 577 KTK--AKLKGH-QNRITCLAYSLSLNVLVS-SGADAQLCVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 650 (790)
Q Consensus 577 ~~~--~~l~~h-~~~v~~l~~spdg~~l~s-~s~dg~I~vwd~~~--~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~ 650 (790)
+.. ..+..+ ...+..++|+|||+++++ +..++.|.+|++.. ++......+...+.+.. ....+..++|+|||+
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT-AHNGAAAIRLSHDGH 252 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC-SCCEEEEEEECTTSC
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC-CCCcceeEEECCCCC
Confidence 433 222222 236788999999996665 55688999999874 44322222221221110 013588899999999
Q ss_pred EEEE-E-eCCcEEEEECCC-C--ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-CeEEEE--ECCCCeEEE
Q 003871 651 HLLS-I-HEGQIDVYEAPT-L--NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-GHVKVF--DTSTLELRC 716 (790)
Q Consensus 651 ~l~~-~-~dg~I~iwd~~~-~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d-g~i~vw--d~~~~~~~~ 716 (790)
+|++ + .++.|.+||+.. + +.+..+.. +...+..++|+|||++|++++.+ +.|.+| |..+|++..
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 8866 3 578999999872 2 34444433 35568899999999999888765 899999 556777654
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=1.1e-19 Score=214.76 Aligned_cols=324 Identities=11% Similarity=0.049 Sum_probs=216.5
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCC---ceEEEEEcCCCCEEEEEeC
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG---RVVRLIYSHSGDFLVALTQ 461 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~---~V~~l~~spdg~~l~s~~~ 461 (790)
.+++|+ |||+++ +++ .|++|++||+. ++....+. .+|.. .+.+++|||||++|++++.
T Consensus 19 ~~~~~s-------~dg~~~----~~~-~d~~i~~~~~~----~g~~~~~~---~~~~~~~~~~~~~~~SpDg~~la~~~~ 79 (719)
T 1z68_A 19 FFPNWI-------SGQEYL----HQS-ADNNIVLYNIE----TGQSYTIL---SNRTMKSVNASNYGLSPDRQFVYLESD 79 (719)
T ss_dssp CCCEES-------SSSEEE----EEC-TTSCEEEEESS----SCCEEEEE---CHHHHHTTTCSEEEECTTSSEEEEEEE
T ss_pred CccEEC-------CCCeEE----EEc-CCCCEEEEEcC----CCcEEEEE---ccccccccceeeEEECCCCCeEEEEec
Confidence 477898 999765 554 58999999997 45555543 12222 4899999999999999876
Q ss_pred ---------CCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEecCCeEEEE
Q 003871 462 ---------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIF 530 (790)
Q Consensus 462 ---------dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~sdg~I~vw 530 (790)
++.|++||+.++.. .... .....+..++|+ |+.|+++.++.|++|
T Consensus 80 ~~~~~~~s~~~~i~~~d~~~g~~---------------------~~~~---~l~~~~~~~~~SPDG~~la~~~~~~i~~~ 135 (719)
T 1z68_A 80 YSKLWRYSYTATYYIYDLSNGEF---------------------VRGN---ELPRPIQYLCWSPVGSKLAYVYQNNIYLK 135 (719)
T ss_dssp EEECSSSCEEEEEEEEETTTTEE---------------------CCSS---CCCSSBCCEEECSSTTCEEEEETTEEEEE
T ss_pred CceeEEeecceEEEEEECCCCcc---------------------ccce---ecCcccccceECCCCCEEEEEECCeEEEE
Confidence 68899998775421 0000 122457889999 889999999999999
Q ss_pred ECCCCcEEEEE-cCCCCCe-----------------EEEEEcCCC-eEEEEeCCC-------------------------
Q 003871 531 SLETFQTLATF-ANPPPIA-----------------TYFILLPQD-LFAFGFDDS------------------------- 566 (790)
Q Consensus 531 d~~~~~~~~~~-~~~~~~v-----------------~~l~~s~~g-~l~sgs~dg------------------------- 566 (790)
++.+++..... .++...+ .+++|+||| .|++++.|.
T Consensus 136 ~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp 215 (719)
T 1z68_A 136 QRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP 215 (719)
T ss_dssp SSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred eCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence 99988765432 1222212 489999999 888887552
Q ss_pred ---------cEEEEeCCCCceE--------EEEcCCCCCEEEEEEeCCCCEEEEEeCC----CcEEEEE----CCCCcee
Q 003871 567 ---------SILVHCPCTKKTK--------AKLKGHQNRITCLAYSLSLNVLVSSGAD----AQLCVWD----AVGWKKL 621 (790)
Q Consensus 567 ---------~I~iwd~~~~~~~--------~~l~~h~~~v~~l~~spdg~~l~s~s~d----g~I~vwd----~~~~~~~ 621 (790)
.|++||+.+++.. ..+.+|...+.+++|+||++++++.... ..|.+|| +.+++..
T Consensus 216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 7889999987642 1234588889999999998777764432 2488899 7775432
Q ss_pred eceeeeeeccCCCCCCCCeE-----EEEEeCCCCEEEE--E-eCC--cEEEEECCCCceeeeecCCCCCCCeEEEEEecC
Q 003871 622 CSKFLHSFQTGLVPETTIVN-----HIQFHPDQIHLLS--I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 691 (790)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~-----~i~~sp~~~~l~~--~-~dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d 691 (790)
.. +.....++. ..+. .++|+|||+.++. + .+| .|++||+.+++ ...+.. +...+..+.++ +
T Consensus 296 ~~--~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~--~~~~v~~~~~~-d 366 (719)
T 1z68_A 296 KT--QEHIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITS--GKWEAINIFRV-T 366 (719)
T ss_dssp GG--GEEEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSC--SSSCEEEEEEE-C
T ss_pred EE--EecccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEeccc--CceEEEEEEEE-e
Confidence 11 100002343 4555 7899999996654 3 344 58888987766 344432 35568888888 8
Q ss_pred CCEEEEEEcC-----CeEEEEECCC--CeE-EEEeccccccCCCCcccccceEEEEEecCCCCEEE-EEeCC--CcEEEE
Q 003871 692 GKCIYVSCKS-----GHVKVFDTST--LEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGLTN--GRVHVI 760 (790)
Q Consensus 692 g~~l~sgs~d-----g~i~vwd~~~--~~~-~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~la-s~s~D--g~i~iW 760 (790)
++.|+..+.+ +..++|.+.. +.. ...+... ..|| ...+. .++|+| ++++++ +++.+ ..+++|
T Consensus 367 ~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~---~~~~-~~~~~--~~~~s~-dg~~l~~~~s~~~~p~~~l~ 439 (719)
T 1z68_A 367 QDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCH---LRKE-RCQYY--TASFSD-YAKYYALVCYGPGIPISTLH 439 (719)
T ss_dssp SSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTT---TTTT-TBCBE--EEEECG-GGSSEEEEECCBSSCEEEEE
T ss_pred CCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCc---cCCC-CCceE--EEEECC-CCCEEEEEcCCCCCCeEEEE
Confidence 8888776655 7788887754 421 2232210 0122 23344 889999 777665 44444 478899
Q ss_pred ecCCCcc
Q 003871 761 EPLESEV 767 (790)
Q Consensus 761 ~~~~~~~ 767 (790)
++.+++.
T Consensus 440 d~~~g~~ 446 (719)
T 1z68_A 440 DGRTDQE 446 (719)
T ss_dssp CSSSCCE
T ss_pred ECCCCCE
Confidence 9887763
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=7.1e-19 Score=187.70 Aligned_cols=234 Identities=14% Similarity=0.039 Sum_probs=176.9
Q ss_pred CcEEEEec-CCeEEEEECCCCcEEEEEcCCC-CCeEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCceEEEEcCCC-----
Q 003871 516 GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKGHQ----- 586 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~g-~l-~sgs~dg~I~iwd~~~~~~~~~l~~h~----- 586 (790)
+.++++++ ++.|.+||..+++.+..+..+. ..+..++|+|+| .+ +++..++.|.+||+.+++....+..+.
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~ 90 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV 90 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence 45667776 8999999999999888886443 256789999999 55 455678999999999998877775322
Q ss_pred -CCEEEEEEeCCCCEEEEEeCC------------CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEE
Q 003871 587 -NRITCLAYSLSLNVLVSSGAD------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 653 (790)
Q Consensus 587 -~~v~~l~~spdg~~l~s~s~d------------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~ 653 (790)
..+.+++|+|||+++++++.+ +.|.+||+.+++... .+.... .+ ..+.+++|+|+|+ ++
T Consensus 91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~~-~~----~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK--PVRTFP-MP----RQVYLMRAADDGS-LY 162 (349)
T ss_dssp EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC--CSEEEE-CC----SSCCCEEECTTSC-EE
T ss_pred cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc--eeeecc-CC----CcccceeECCCCc-EE
Confidence 237789999999999998865 899999998854322 122111 11 3588899999999 55
Q ss_pred EEeCCcEEEEECCCCceeeeecCCC-------------------------------------------------------
Q 003871 654 SIHEGQIDVYEAPTLNHTSQLVPDK------------------------------------------------------- 678 (790)
Q Consensus 654 ~~~dg~I~iwd~~~~~~~~~~~~~~------------------------------------------------------- 678 (790)
++ ++.|++||+.+++.+..+....
T Consensus 163 ~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 163 VA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp EE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred Ec-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 54 3459999999988777664321
Q ss_pred -----------CCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCC
Q 003871 679 -----------MDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 746 (790)
Q Consensus 679 -----------h~~~v~~l~~s~-dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 746 (790)
+...+..++|+| +|++++++ ++.|++||+.+++.+..+.. + ..+. +++|+| +++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~------~---~~~~--~~~~s~-dg~ 307 (349)
T 1jmx_B 242 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL------D---HTYY--CVAFDK-KGD 307 (349)
T ss_dssp TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC------S---SCCC--EEEECS-SSS
T ss_pred CCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC------C---CCcc--ceEECC-CCC
Confidence 001345678889 99999988 89999999999998777652 1 2345 899999 888
Q ss_pred EEEEEeCCCcEEEEecCCCccccccC
Q 003871 747 RIALGLTNGRVHVIEPLESEVEWGKL 772 (790)
Q Consensus 747 ~las~s~Dg~i~iW~~~~~~~~w~~~ 772 (790)
+|++++.++.|++||+.+++......
T Consensus 308 ~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 308 KLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCeEEEEeccccceeeeee
Confidence 88888889999999999988665443
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=2e-19 Score=206.92 Aligned_cols=266 Identities=9% Similarity=0.025 Sum_probs=188.2
Q ss_pred CCceEEEEEcCCCCEEEEEeC-CCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcE
Q 003871 441 GGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 518 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~-dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~ 518 (790)
..+|++++|+|||++||+++. ||+++||++.++. ..+.. ..+...+.+++|+ +++
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~---------------------~~~lt--~~~~~~~~~~~~spd~~ 77 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE---------------------TVKLN--REPINSVLDPHYGVGRV 77 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE---------------------EEECC--SSCCSEECEECTTCSEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC---------------------cEeee--cccccccccccCCCCeE
Confidence 567999999999999999888 9999999874422 22211 1233678999999 755
Q ss_pred EEEec----CCeEEEEECCC---CcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCE
Q 003871 519 LFSAS----GGKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 589 (790)
Q Consensus 519 l~s~s----dg~I~vwd~~~---~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v 589 (790)
+++++ +....+|.+.. +... .+... ..+...+|+|+| .+++.+.++.+.+||+.+++...... +..
T Consensus 78 l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~-- 152 (582)
T 3o4h_A 78 ILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG-- 152 (582)
T ss_dssp EEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--
T ss_pred EEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--
Confidence 55443 24455654432 2222 44322 234567888888 44444445556699999887655444 333
Q ss_pred EEEEEeCCCCEEEEEeCC----CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCC--cEEE
Q 003871 590 TCLAYSLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDV 662 (790)
Q Consensus 590 ~~l~~spdg~~l~s~s~d----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg--~I~i 662 (790)
.+++|+|||++|++++.+ +.|++||+.+++.. . + ..+. +.+..++|+|||+.|+++ .++ .|++
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~---~---l-~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~ 222 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR---V---F-DSGE---GSFSSASISPGMKVTAGLETAREARLVT 222 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE---E---E-CCSS---CEEEEEEECTTSCEEEEEECSSCEEEEE
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce---E---e-ecCC---CccccceECCCCCEEEEccCCCeeEEEE
Confidence 789999999999988877 78999999886532 1 2 2333 578999999999999975 667 7999
Q ss_pred EECCCCceeeeecCCCCCCCeEEEE--------EecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccc
Q 003871 663 YEAPTLNHTSQLVPDKMDLPITYAT--------YSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 734 (790)
Q Consensus 663 wd~~~~~~~~~~~~~~h~~~v~~l~--------~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 734 (790)
||+.+++.. .+. .|...+..++ |+|||.++++++.|+.+++|++ |+..... .+.+.
T Consensus 223 ~d~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----------~~~v~ 286 (582)
T 3o4h_A 223 VDPRDGSVE-DLE--LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----------QGNHG 286 (582)
T ss_dssp ECTTTCCEE-ECC--CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----------SSEEE
T ss_pred EcCCCCcEE-Ecc--CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----------CCceE
Confidence 999988876 443 3455666666 9999999999999999999999 6544311 22455
Q ss_pred eEEEEEecCCCCEEEEEeCCC---cEEEEecCC
Q 003871 735 PLVIAAHPLEPNRIALGLTNG---RVHVIEPLE 764 (790)
Q Consensus 735 ~~~v~~sp~d~~~las~s~Dg---~i~iW~~~~ 764 (790)
+++|+ ++.++++++.+. .+++|+..+
T Consensus 287 --~~~~s--dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 287 --RVVLW--RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp --EEEEE--TTEEEEEEEETTEEEEEEEETTCC
T ss_pred --EEEec--CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 88888 578888888775 467777653
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=1.9e-19 Score=207.03 Aligned_cols=266 Identities=11% Similarity=-0.022 Sum_probs=189.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccC-CCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC--
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-- 461 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~-d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~-- 461 (790)
++++|+ |||+.+ |+++. ||+++||+++ ++...++. ..+...+.+++|||| +.+++++.
T Consensus 25 ~~~~~~-------~DG~~l----a~~s~~~g~~~lw~~~----~g~~~~lt---~~~~~~~~~~~~spd-~~l~~~~~~~ 85 (582)
T 3o4h_A 25 YSLQGV-------VDGDKL----LVVGFSEGSVNAYLYD----GGETVKLN---REPINSVLDPHYGVG-RVILVRDVSK 85 (582)
T ss_dssp EEEEEE-------ETTTEE----EEEEEETTEEEEEEEE----TTEEEECC---SSCCSEECEECTTCS-EEEEEEECST
T ss_pred heeecC-------CCCCeE----EEEEccCCceeEEEEc----CCCcEeee---cccccccccccCCCC-eEEEEeccCC
Confidence 899999 999999 88776 9999999985 46666654 123368999999999 76666664
Q ss_pred -CCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCc--EEEEecCCeEEEEECCCCcEE
Q 003871 462 -TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGS--HLFSASGGKISIFSLETFQTL 538 (790)
Q Consensus 462 -dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--~l~s~sdg~I~vwd~~~~~~~ 538 (790)
+....+|.+.. |+. +...... ......+.+++++++ .+++++++.+.+||+.+++..
T Consensus 86 g~~~~~l~~~~~----------------~~~--g~~~~l~--~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~ 145 (582)
T 3o4h_A 86 GAEQHALFKVNT----------------SRP--GEEQRLE--AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR 145 (582)
T ss_dssp TSCCEEEEEEET----------------TST--TCCEECT--TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE
T ss_pred CCcceEEEEEec----------------cCC--Ccccccc--CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE
Confidence 45567766542 110 1111111 112222334444443 344555566669999988765
Q ss_pred EEEcCCCCCeEEEEEcCCC-eEEEEeCC----CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC--cEE
Q 003871 539 ATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA--QLC 611 (790)
Q Consensus 539 ~~~~~~~~~v~~l~~s~~g-~l~sgs~d----g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg--~I~ 611 (790)
.....+. .+++|+||| .+++++.+ +.|++||+.+++.. .+..|.+.+..++|+|||++|++++.++ .|+
T Consensus 146 ~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~ 221 (582)
T 3o4h_A 146 ELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLV 221 (582)
T ss_dssp EEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEE
T ss_pred EeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEE
Confidence 5544333 789999999 88877776 78999999988754 6778888999999999999999888888 899
Q ss_pred EEECCCCceeeceeeeeeccCCCCCCCCeEEEE--------EeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCC
Q 003871 612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ--------FHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLP 682 (790)
Q Consensus 612 vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~--------~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~ 682 (790)
+||+.+++.. +..++. ..+..++ |+|||.+++++ .++.+++|++ ++.... ....
T Consensus 222 ~~d~~~~~~~-------~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~-----~~~~ 284 (582)
T 3o4h_A 222 TVDPRDGSVE-------DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA-----PQGN 284 (582)
T ss_dssp EECTTTCCEE-------ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC-----CSSE
T ss_pred EEcCCCCcEE-------EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc-----CCCc
Confidence 9999986532 122333 3455555 99999777764 8999999999 665542 2467
Q ss_pred eEEEEEecCCCEEEEEEcCC---eEEEEECCC
Q 003871 683 ITYATYSCDGKCIYVSCKSG---HVKVFDTST 711 (790)
Q Consensus 683 v~~l~~s~dg~~l~sgs~dg---~i~vwd~~~ 711 (790)
+.+++|+ +|+++++++.+. .+++||..+
T Consensus 285 v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 285 HGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred eEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 8999999 999999888874 477777654
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=215.01 Aligned_cols=321 Identities=11% Similarity=0.027 Sum_probs=216.0
Q ss_pred ccccCCC------CCCCcceeeeccCCCcccccccccCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 003871 334 CINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL---DASSGDDSNDSSCFNDNNQSRESTSLPDA 404 (790)
Q Consensus 334 ~i~fspd------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~---~v~~~~~~i~~~~fs~~~~~~s~dg~~la 404 (790)
.++|+|| +.|++|+ +||..+|+.. ..+.+|.. .+ .+++|| |||+++
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~--~~~~~~g~~~--------~~~~~~~~~~~~~-------~~~~~S-------pDg~~l- 74 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIV--LYNIETGQSY--------TILSNRTMKSVNA-------SNYGLS-------PDRQFV- 74 (719)
T ss_dssp CCEESSSSEEEEECTTSCEE--EEESSSCCEE--------EEECHHHHHTTTC-------SEEEEC-------TTSSEE-
T ss_pred ccEECCCCeEEEEcCCCCEE--EEEcCCCcEE--------EEEccccccccce-------eeEEEC-------CCCCeE-
Confidence 7899998 5788888 9999999875 44554443 36 899999 999999
Q ss_pred ccceeccC---------CCceEeeeccccCCCCce---eeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 003871 405 DSAVCAKS---------LEKSVNLKLQLINEPSEC---RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 472 (790)
Q Consensus 405 ~~~at~s~---------d~~i~iwd~~~~~~~~~~---~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~ 472 (790)
++++. +++|++||+.+ +.. ..+ ...+..++|||||++|+++. ++.|++|++.+
T Consensus 75 ---a~~~~~~~~~~~s~~~~i~~~d~~~----g~~~~~~~l-------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~ 139 (719)
T 1z68_A 75 ---YLESDYSKLWRYSYTATYYIYDLSN----GEFVRGNEL-------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG 139 (719)
T ss_dssp ---EEEEEEEECSSSCEEEEEEEEETTT----TEECCSSCC-------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred ---EEEecCceeEEeecceEEEEEECCC----Cccccceec-------CcccccceECCCCCEEEEEE-CCeEEEEeCCC
Confidence 87765 78999999973 444 221 25688899999999999886 78999999876
Q ss_pred CCccccccccccccccccCCCceeeeecccCCCC---------CCeEEEEec--CcEEEEec-CC---------------
Q 003871 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK---------DSISCFALR--GSHLFSAS-GG--------------- 525 (790)
Q Consensus 473 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------~~V~~l~~s--~~~l~s~s-dg--------------- 525 (790)
+.... .. .+.....+. .++. ....+++|+ |++|++++ |.
T Consensus 140 g~~~~--l~-------~~~~~~~v~-----~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~ 205 (719)
T 1z68_A 140 DPPFQ--IT-------FNGRENKIF-----NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQ 205 (719)
T ss_dssp SCCEE--CC-------CCCBTTTEE-----ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSS
T ss_pred CCcEE--Ee-------cCCCcCCeE-----cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCC
Confidence 54300 00 000000000 0121 122578999 88888877 42
Q ss_pred -------------------eEEEEECCCCcEE---E-----EEcCCCCCeEEEEEcCCC-eEEEEeCCC----cEEEEe-
Q 003871 526 -------------------KISIFSLETFQTL---A-----TFANPPPIATYFILLPQD-LFAFGFDDS----SILVHC- 572 (790)
Q Consensus 526 -------------------~I~vwd~~~~~~~---~-----~~~~~~~~v~~l~~s~~g-~l~sgs~dg----~I~iwd- 572 (790)
.|++||+.+++.. . .+.++...+..++|+||+ .+++....+ .|.+||
T Consensus 206 ~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~ 285 (719)
T 1z68_A 206 YPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDF 285 (719)
T ss_dssp SCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEE
T ss_pred CccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcc
Confidence 7889999987642 1 123567788999999999 766644332 488999
Q ss_pred ---CCCCceEEEE----cCCCCCEE-----EEEEeCCCCEEEE--EeCCC--cEEEEECCCCceeeceeeeeeccCCCCC
Q 003871 573 ---PCTKKTKAKL----KGHQNRIT-----CLAYSLSLNVLVS--SGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPE 636 (790)
Q Consensus 573 ---~~~~~~~~~l----~~h~~~v~-----~l~~spdg~~l~s--~s~dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~ 636 (790)
..+++....+ .+|...+. .++|+|||+.++. +..++ .|.+||+.+++. ..+..+ .
T Consensus 286 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~------~~lt~~-~-- 356 (719)
T 1z68_A 286 REDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA------IQITSG-K-- 356 (719)
T ss_dssp CSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC------EECSCS-S--
T ss_pred cCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce------EecccC-c--
Confidence 8877665444 35666666 8899999996554 44555 577778776441 112222 2
Q ss_pred CCCeEEEEEeCCCCEEEE-EeC-----CcEEEEECCC--Cc-eeeeecC--CCCCCCeEEEEEecCCCEEEE-EEcC--C
Q 003871 637 TTIVNHIQFHPDQIHLLS-IHE-----GQIDVYEAPT--LN-HTSQLVP--DKMDLPITYATYSCDGKCIYV-SCKS--G 702 (790)
Q Consensus 637 ~~~v~~i~~sp~~~~l~~-~~d-----g~I~iwd~~~--~~-~~~~~~~--~~h~~~v~~l~~s~dg~~l~s-gs~d--g 702 (790)
..+..+.++ +++.++. +.+ +..++|.+.. +. ....+.. ..+...+..+.|+||+++++. ++.+ .
T Consensus 357 -~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p 434 (719)
T 1z68_A 357 -WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIP 434 (719)
T ss_dssp -SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSC
T ss_pred -eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCC
Confidence 357787777 8887776 443 6788887653 32 1233321 114567889999999987774 3333 5
Q ss_pred eEEEEECCCCeEEEEec
Q 003871 703 HVKVFDTSTLELRCQIN 719 (790)
Q Consensus 703 ~i~vwd~~~~~~~~~~~ 719 (790)
.+++||+.+++....+.
T Consensus 435 ~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 435 ISTLHDGRTDQEIKILE 451 (719)
T ss_dssp EEEEECSSSCCEEEEEE
T ss_pred eEEEEECCCCCEEEEee
Confidence 78999999888665554
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=6.4e-18 Score=183.48 Aligned_cols=316 Identities=11% Similarity=0.042 Sum_probs=192.1
Q ss_pred ccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccC-CCc--eEeeeccccCCC
Q 003871 351 FPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKS-LEK--SVNLKLQLINEP 427 (790)
Q Consensus 351 wd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~-d~~--i~iwd~~~~~~~ 427 (790)
+|..+|..+ ..+..|..... ..-+...+|| |||+.+ +.++. ++. |.+||+. +
T Consensus 15 ~~~~~g~~~--------~~lt~~~~~~~--~~~~~~~~~S-------pDg~~l----~~~~~~~g~~~l~~~d~~----~ 69 (388)
T 3pe7_A 15 QDASTGAQV--------TRLTPPDVTCH--RNYFYQKCFT-------RDGSKL----LFGGAFDGPWNYYLLDLN----T 69 (388)
T ss_dssp ECTTTCCEE--------EECSCTTSCEE--CCCTTSCCBC-------TTSCEE----EEEECTTSSCEEEEEETT----T
T ss_pred ecCCCCcce--------EEecCCccccc--chhhcCccCC-------CCCCEE----EEEEcCCCCceEEEEeCC----C
Confidence 467777765 56666654430 0000348898 999999 76666 674 6677775 4
Q ss_pred CceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCC
Q 003871 428 SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD 507 (790)
Q Consensus 428 ~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 507 (790)
+....+. .+|...+..++|+|||++|+.++.++.+.+||+.++..
T Consensus 70 g~~~~lt---~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~-------------------------------- 114 (388)
T 3pe7_A 70 QVATQLT---EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE-------------------------------- 114 (388)
T ss_dssp CEEEECC---CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE--------------------------------
T ss_pred CceEEee---eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc--------------------------------
Confidence 5555544 24555555678999999999999888888888765322
Q ss_pred CeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEE--EEEcCCC-eEEE----------------------E
Q 003871 508 SISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATY--FILLPQD-LFAF----------------------G 562 (790)
Q Consensus 508 ~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~--l~~s~~g-~l~s----------------------g 562 (790)
...+..+...+.. ..++|++ .++. .
T Consensus 115 ------------------------------~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 115 ------------------------------NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp ------------------------------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred ------------------------------eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 1111111111111 1224444 3321 2
Q ss_pred eCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeC-CCCEEEEEeCC------CcEEEEECCCCceeeceeeeeeccCCCC
Q 003871 563 FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVP 635 (790)
Q Consensus 563 s~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~s~s~d------g~I~vwd~~~~~~~~~~~l~~~~~~~~~ 635 (790)
..++.|++||+.+++.. .+..+...+..++|+| ||+.|+.++.+ ..|.++|..++.. ..+......
T Consensus 165 ~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~------~~l~~~~~~ 237 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM------RKVKTHAEG 237 (388)
T ss_dssp CCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC------EESCCCCTT
T ss_pred CCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce------EEeeeCCCC
Confidence 34468999999988654 4445667799999999 99999887763 3788888876432 112222210
Q ss_pred CCCCeEEEEEeCCCCEEEE-E-eCC----cEEEEECCCCceeeeecCCCCC---CCeEEEEEecCCCEEEEE--------
Q 003871 636 ETTIVNHIQFHPDQIHLLS-I-HEG----QIDVYEAPTLNHTSQLVPDKMD---LPITYATYSCDGKCIYVS-------- 698 (790)
Q Consensus 636 ~~~~v~~i~~sp~~~~l~~-~-~dg----~I~iwd~~~~~~~~~~~~~~h~---~~v~~l~~s~dg~~l~sg-------- 698 (790)
..+..++|+|||+.|+. + .++ .|++||+.+++.........+. ......+|+|||+.|+..
T Consensus 238 --~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 315 (388)
T 3pe7_A 238 --ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK 315 (388)
T ss_dssp --EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------
T ss_pred --cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc
Confidence 24778999999998865 4 222 3999999988753322111100 001223799999988754
Q ss_pred -EcCCeEEEEECCCCeEEEEeccccccC---CCCcccccceEEEEEecCCCCEEEEEe-CCCcEEEEecCCCcccc
Q 003871 699 -CKSGHVKVFDTSTLELRCQINLTAYAQ---PGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLESEVEW 769 (790)
Q Consensus 699 -s~dg~i~vwd~~~~~~~~~~~~~~~~~---~gh~~~~v~~~~v~~sp~d~~~las~s-~Dg~i~iW~~~~~~~~w 769 (790)
..+..|++||+.+++...... +.... .+.....+. +++|+| ||+.|+.++ .+|...||.+.-.+..|
T Consensus 316 ~~~~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~--~~~~sp-Dg~~l~~~s~~~g~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 316 IENDPFLYVFNMKNGTQHRVAR-HDTSWKVFEGDRQVTHP--HPSFTP-DDKQILFTSDVHGKPALYLATLPESVW 387 (388)
T ss_dssp -CCCCEEEEEETTTTEEEEEEE-CCCCCCCBTTBSSTTCC--CCEECT-TSSEEEEEECTTSSCEEEEEECCGGGG
T ss_pred cCCCCEEEEEeccCCceEEecc-ccCcccccccccccCCC--CccCCC-CCCEEEEEecCCCceeEEEEECChhcc
Confidence 456789999999987644332 11000 000000234 789999 898877665 57888888776555444
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=4.4e-18 Score=181.53 Aligned_cols=245 Identities=11% Similarity=0.071 Sum_probs=177.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEE-Ee
Q 003871 446 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF-SA 522 (790)
Q Consensus 446 ~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~-s~ 522 (790)
.++++++++++++++.++.|.+||..++.. ..... .+....+..++|+ +++++ ++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~-~~~~~~~~~~~~s~dg~~~~v~~ 61 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------YKSCV-MPDKFGPGTAMMAPDNRTAYVLN 61 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------EEEEE-CSSCCSSCEEEECTTSSEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE---------------------EEEEe-cCCCCCCceeEECCCCCEEEEEe
Confidence 346788899999999999999999876432 11111 1122256788998 66554 44
Q ss_pred c-CCeEEEEECCCCcEEEEEcCCC------CCeEEEEEcCCC-eEEEEeCC------------CcEEEEeCCCCce---E
Q 003871 523 S-GGKISIFSLETFQTLATFANPP------PIATYFILLPQD-LFAFGFDD------------SSILVHCPCTKKT---K 579 (790)
Q Consensus 523 s-dg~I~vwd~~~~~~~~~~~~~~------~~v~~l~~s~~g-~l~sgs~d------------g~I~iwd~~~~~~---~ 579 (790)
. ++.|.+||+.+++....+.... ..+..++|+|+| .+++++.+ +.|.+||+.+++. +
T Consensus 62 ~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 141 (349)
T 1jmx_B 62 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 141 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence 4 7999999999998887776332 236789999999 88888755 8999999988543 3
Q ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeee-----------------------------ec
Q 003871 580 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-----------------------------FQ 630 (790)
Q Consensus 580 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~-----------------------------~~ 630 (790)
..+. +...+.+++|+|||+ +++++. .|.+||+.+++......... +.
T Consensus 142 ~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (349)
T 1jmx_B 142 RTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 217 (349)
T ss_dssp EEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred eecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence 3444 334688999999999 555543 49999998876433211110 00
Q ss_pred cC---------------------CC---------CCCCCeEEEEEeC-CCCEEEEEeCCcEEEEECCCCceeeeecCCCC
Q 003871 631 TG---------------------LV---------PETTIVNHIQFHP-DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM 679 (790)
Q Consensus 631 ~~---------------------~~---------~~~~~v~~i~~sp-~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h 679 (790)
.. .. +....+..++|+| ++++++++ ++.|++||+.+++.+..+..
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~--- 293 (349)
T 1jmx_B 218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL--- 293 (349)
T ss_dssp EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC---
T ss_pred ecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC---
Confidence 00 00 0001456788899 99999988 88999999999988877753
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecc
Q 003871 680 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 720 (790)
Q Consensus 680 ~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~ 720 (790)
...+.+++|+|+|++|++++.++.|++||..+++.+..+..
T Consensus 294 ~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 294 DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 34578999999999999888899999999999998887753
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=1.6e-16 Score=170.69 Aligned_cols=248 Identities=14% Similarity=0.113 Sum_probs=164.1
Q ss_pred CCCCeEEEEec--CcEEEEec-C----CeEEEEECCC--CcE--EEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCcEEEE
Q 003871 505 PKDSISCFALR--GSHLFSAS-G----GKISIFSLET--FQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVH 571 (790)
Q Consensus 505 ~~~~V~~l~~s--~~~l~s~s-d----g~I~vwd~~~--~~~--~~~~~~~~~~v~~l~~s~~g-~l~sgs-~dg~I~iw 571 (790)
+...+..++|+ +++|++++ + +.|.+|++.. ++. +.....+......+++ ++ .+++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 45667778999 88888887 4 7999998865 433 3334445556677777 67 555555 68899999
Q ss_pred eCCCCceEEE------EcC--------CCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCce------eece-eeeee
Q 003871 572 CPCTKKTKAK------LKG--------HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKK------LCSK-FLHSF 629 (790)
Q Consensus 572 d~~~~~~~~~------l~~--------h~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~~------~~~~-~l~~~ 629 (790)
++.....+.. ..+ +...+.+++|+|||+++++++ .++.|.+|++..... .... .....
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9975432211 111 123468899999999776655 488999999876331 1100 00111
Q ss_pred ccCCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEECCCCce--eeeecC-CCCCCCeEEEEEecCCCEEEEEEcC--C
Q 003871 630 QTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH--TSQLVP-DKMDLPITYATYSCDGKCIYVSCKS--G 702 (790)
Q Consensus 630 ~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~~~~~--~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs~d--g 702 (790)
..... ..+..++|+|+|++++++ .++.|.+||+.+++. +..+.. ..+......++|+|||++|+++..+ +
T Consensus 206 ~~~~~---~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 206 KVAPG---SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp ECCTT---CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred ecCCC---CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 11111 467899999999988874 588999999987754 222322 1234567899999999999776665 8
Q ss_pred eEEEEECC--CCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEe-CCCcEEEEec--CCCcc
Q 003871 703 HVKVFDTS--TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEP--LESEV 767 (790)
Q Consensus 703 ~i~vwd~~--~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s-~Dg~i~iW~~--~~~~~ 767 (790)
.|.+|++. +++........ . ...+. +++|+| +|++|++++ .++.|.+|++ .+++.
T Consensus 283 ~i~v~~~~~~~g~~~~~~~~~-----~--g~~~~--~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 283 GVAIFKVDETNGTLTKVGYQL-----T--GIHPR--NFIITP-NGKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp EEEEEEECTTTCCEEEEEEEE-----C--SSCCC--EEEECT-TSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEEEEEcCCCCcEEEeeEec-----C--CCCCc--eEEECC-CCCEEEEEECCCCCEEEEEEECCCCcE
Confidence 99999996 55533221111 1 22344 899999 899888887 6789999654 45553
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=6.4e-17 Score=191.24 Aligned_cols=322 Identities=9% Similarity=0.045 Sum_probs=208.0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCC-----ceEEEEEcCCCCEEEEE
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG-----RVVRLIYSHSGDFLVAL 459 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~-----~V~~l~~spdg~~l~s~ 459 (790)
.+++|+ |||+++ +++ |++|++||+. ++.+..+. .+|.. ....++|||||++|+.+
T Consensus 20 ~~~~w~-------~dg~~~----~~~--~~~i~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~Spdg~~l~~~ 79 (740)
T 4a5s_A 20 YSLRWI-------SDHEYL----YKQ--ENNILVFNAE----YGNSSVFL---ENSTFDEFGHSINDYSISPDGQFILLE 79 (740)
T ss_dssp CCEEEC-------SSSEEE----EEE--TTEEEEEETT----TCCEEEEE---CTTTTTTCCSCCCEEEECTTSSEEEEE
T ss_pred cccEEC-------CCCcEE----EEc--CCcEEEEECC----CCceEEEE---echhhhhhcccccceEECCCCCEEEEE
Confidence 788999 999988 886 8999999997 45555432 23332 23458899999999998
Q ss_pred eCC---------CcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEecCCeEE
Q 003871 460 TQT---------ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKIS 528 (790)
Q Consensus 460 ~~d---------g~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~sdg~I~ 528 (790)
+.+ +.+.+||+.++ .+.+. ..+...+..++|+ |+.||.+.++.|.
T Consensus 80 ~~~~~~~r~~~~~~~~~~d~~~~---------------------~~~~l---~~~~~~~~~~~~SPdG~~la~~~~~~i~ 135 (740)
T 4a5s_A 80 YNYVKQWRHSYTASYDIYDLNKR---------------------QLITE---ERIPNNTQWVTWSPVGHKLAYVWNNDIY 135 (740)
T ss_dssp EEEEECSSSCEEEEEEEEETTTT---------------------EECCS---SCCCTTEEEEEECSSTTCEEEEETTEEE
T ss_pred ECCeeeEEEccceEEEEEECCCC---------------------cEEEc---ccCCCcceeeEECCCCCEEEEEECCeEE
Confidence 876 44557766553 33221 2467789999999 8999999999999
Q ss_pred EEECCCCcEEEEE-cCCCCCe-----------------EEEEEcCCC-eEEEEeCCC-----------------------
Q 003871 529 IFSLETFQTLATF-ANPPPIA-----------------TYFILLPQD-LFAFGFDDS----------------------- 566 (790)
Q Consensus 529 vwd~~~~~~~~~~-~~~~~~v-----------------~~l~~s~~g-~l~sgs~dg----------------------- 566 (790)
+|+..+++..+.. .++...+ ..+.||||| .||.++.|.
T Consensus 136 ~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~ 215 (740)
T 4a5s_A 136 VKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVR 215 (740)
T ss_dssp EESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEE
T ss_pred EEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCccee
Confidence 9999887754322 1222222 358999999 888775321
Q ss_pred -------------cEEEEeCCC---Cc--eEEEEc------CCCCCEEEEEEeCCCCEEEEEeC----CCcEEEEECCCC
Q 003871 567 -------------SILVHCPCT---KK--TKAKLK------GHQNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGW 618 (790)
Q Consensus 567 -------------~I~iwd~~~---~~--~~~~l~------~h~~~v~~l~~spdg~~l~s~s~----dg~I~vwd~~~~ 618 (790)
+|++||+.+ ++ ....+. +|...+..++|+|||+.++.... +..|++||+.++
T Consensus 216 ~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 216 VPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES 295 (740)
T ss_dssp EECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred ecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCC
Confidence 588899988 73 233343 37778999999999997665533 347999999987
Q ss_pred c----eeeceeeeeeccCCCCCCCCeE-----EEEEeCCCCEEE-E-E-eCC--cEEEEECCCCceeeeecCCCCCCCeE
Q 003871 619 K----KLCSKFLHSFQTGLVPETTIVN-----HIQFHPDQIHLL-S-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPIT 684 (790)
Q Consensus 619 ~----~~~~~~l~~~~~~~~~~~~~v~-----~i~~sp~~~~l~-~-~-~dg--~I~iwd~~~~~~~~~~~~~~h~~~v~ 684 (790)
+ ......+ +...+. ..+. .++|+|||+.++ . + .+| .|++||+.+++.. .+.. ....+.
T Consensus 296 ~~~~~~~~~~~l--~~~~~~---~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~--g~~~v~ 367 (740)
T 4a5s_A 296 SGRWNCLVARQH--IEMSTT---GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITK--GTWEVI 367 (740)
T ss_dssp TTEEEECGGGCE--EEECSS---SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCC--SSSCEE
T ss_pred ccccceeEEEEe--eeccCC---ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-eccc--CCEEEE
Confidence 6 2211111 112232 3333 788999999877 4 3 333 5999999876654 3432 245566
Q ss_pred EEEEecCCCEEEEEEcC-------CeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC---
Q 003871 685 YATYSCDGKCIYVSCKS-------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN--- 754 (790)
Q Consensus 685 ~l~~s~dg~~l~sgs~d-------g~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D--- 754 (790)
.+. .+|++.|+..+.. ..|+..++.++.....+.... .+. ....+ .++|+| ++++++.....
T Consensus 368 ~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~---~~~-~~~~~--~~~~S~-dg~~~~~~~s~~~~ 439 (740)
T 4a5s_A 368 GIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCEL---NPE-RCQYY--SVSFSK-EAKYYQLRCSGPGL 439 (740)
T ss_dssp EEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTT---STT-TBCBE--EEEECT-TSSEEEEEECSBSS
T ss_pred EEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeecccc---CCC-CCceE--EEEECC-CCCEEEEEeCCCCC
Confidence 554 2557766644433 356666666655433433110 011 22344 899999 78876644433
Q ss_pred CcEEEEecCCCc
Q 003871 755 GRVHVIEPLESE 766 (790)
Q Consensus 755 g~i~iW~~~~~~ 766 (790)
..+.+++..+++
T Consensus 440 p~~~l~~~~~~~ 451 (740)
T 4a5s_A 440 PLYTLHSSVNDK 451 (740)
T ss_dssp CEEEEEETTTTE
T ss_pred CEEEEEECCCCc
Confidence 367777776554
No 162
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=2.1e-17 Score=181.87 Aligned_cols=253 Identities=8% Similarity=0.005 Sum_probs=168.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCC-------Cceeeeec-cCCCCCCceEEEEEcCCCCEE
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEP-------SECRTLLL-PDNSFGGRVVRLIYSHSGDFL 456 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~-------~~~~~~~l-~~~~h~~~V~~l~~spdg~~l 456 (790)
+.++++ +++.++ ++++.|+ +++|+....... ........ ....|...|.+++|+|+|++|
T Consensus 40 n~lavs-------~~~~~l----~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 107 (434)
T 2oit_A 40 SLLAVS-------NKYGLV----FAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTL 107 (434)
T ss_dssp BCEEEE-------TTTTEE----EEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEE
T ss_pred cEEEEe-------cCCCEE----EEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEE
Confidence 788998 888888 8888887 899876432110 01110000 001256789999999999999
Q ss_pred E----EEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec---CcEEEEec-CCeEE
Q 003871 457 V----ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKIS 528 (790)
Q Consensus 457 ~----s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~l~s~s-dg~I~ 528 (790)
+ +++.|+.|++||+.+... +. .... ..+.......+|...|.+++|+ +++|++++ ||+|+
T Consensus 108 av~~~sgs~d~~v~iwd~~~~~~--~~---------~~~~-~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~ 175 (434)
T 2oit_A 108 SACMMSSEYGSIIAFFDVRTFSN--EA---------KQQK-RPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIA 175 (434)
T ss_dssp EEEEEETTTEEEEEEEEHHHHHC--TT---------CSSC-CCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEE
T ss_pred EEEEeccCCCceEEEEEcccccc--CC---------cCCc-ceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEE
Confidence 9 677799999999865310 00 0000 0001111223689999999999 57899888 99999
Q ss_pred EEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCC-------CCCEEEEEEeCCCCE
Q 003871 529 IFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-------QNRITCLAYSLSLNV 600 (790)
Q Consensus 529 vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h-------~~~v~~l~~spdg~~ 600 (790)
+||++++.......+|...|.+++|+|+| +|++|+.||+|++||++ ++....+..| ...|.+++|++++.+
T Consensus 176 iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~ 254 (434)
T 2oit_A 176 VLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVF 254 (434)
T ss_dssp EEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred EEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceE
Confidence 99999987777777788899999999999 99999999999999998 6666665443 237999999998877
Q ss_pred EEE-EeCCC------cEEEEECCCCceeeceeeeeecc------CCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEEC
Q 003871 601 LVS-SGADA------QLCVWDAVGWKKLCSKFLHSFQT------GLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEA 665 (790)
Q Consensus 601 l~s-~s~dg------~I~vwd~~~~~~~~~~~l~~~~~------~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~ 665 (790)
+++ ++.|| .+++||++..+.........+.. +.. .+...+.+-++.++++++ ..+.|.++..
T Consensus 255 l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 255 AIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTER---QHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSS---CCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCc---CcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 754 33443 38999998642111111111110 111 233344444777777763 4455666654
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=2.1e-16 Score=170.24 Aligned_cols=275 Identities=8% Similarity=0.039 Sum_probs=179.0
Q ss_pred CceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecC-CCCccccccccccccccccCC
Q 003871 414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ-SNKQSLEEENVNMESQLYQPS 492 (790)
Q Consensus 414 ~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~-~~~~~~g~~~~~~~~~i~~~~ 492 (790)
+.|.+|+++. .++....+.....++...+..++|+|||++|++++.+ .|.+|++. ++..
T Consensus 14 ~~i~~~~~d~--~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~----------------- 73 (365)
T 1jof_A 14 GAIFTVQFDD--EKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI----------------- 73 (365)
T ss_dssp CEEEEEEEET--TTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-----------------
T ss_pred CcEEEEEEEC--CCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-----------------
Confidence 5688888752 2344433221000233468899999999999998887 89999975 3221
Q ss_pred CceeeeecccCCCCCCeEEEEec--CcE--EEEe--------------cCCeEEEEECC-CCcEEEEEc----CCCCCeE
Q 003871 493 SKLVMTNDIAADPKDSISCFALR--GSH--LFSA--------------SGGKISIFSLE-TFQTLATFA----NPPPIAT 549 (790)
Q Consensus 493 ~~~~~~~~~~~~~~~~V~~l~~s--~~~--l~s~--------------sdg~I~vwd~~-~~~~~~~~~----~~~~~v~ 549 (790)
........+ +.+.+++|+ |++ ++++ .+|.+.+|++. +++....+. .+...+.
T Consensus 74 ----~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~ 148 (365)
T 1jof_A 74 ----VHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH 148 (365)
T ss_dssp ----EEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE
T ss_pred ----EEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcce
Confidence 110000001 124456777 663 4444 47899999997 466554443 2456789
Q ss_pred EEEEcCCC-eEEEEe-CCCcEEEEeCC-CCceE--EEEc--CCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECC--CCc
Q 003871 550 YFILLPQD-LFAFGF-DDSSILVHCPC-TKKTK--AKLK--GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAV--GWK 619 (790)
Q Consensus 550 ~l~~s~~g-~l~sgs-~dg~I~iwd~~-~~~~~--~~l~--~h~~~v~~l~~spdg~~l~s~s~-dg~I~vwd~~--~~~ 619 (790)
+++|+|+| +++++. .++.|++||+. +++.. ..+. .|...+..++|+|||+++++++. ++.|.+|++. +++
T Consensus 149 ~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~ 228 (365)
T 1jof_A 149 GMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHM 228 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCc
Confidence 99999999 777765 46799999998 77653 3343 24567999999999999888775 6899999875 444
Q ss_pred eee-ceeeeeeccCCCCCCC------CeEEEE-EeCCCCEEEEE--eCC-----cEEEEECC-CCceeeeec-CCCCCCC
Q 003871 620 KLC-SKFLHSFQTGLVPETT------IVNHIQ-FHPDQIHLLSI--HEG-----QIDVYEAP-TLNHTSQLV-PDKMDLP 682 (790)
Q Consensus 620 ~~~-~~~l~~~~~~~~~~~~------~v~~i~-~sp~~~~l~~~--~dg-----~I~iwd~~-~~~~~~~~~-~~~h~~~ 682 (790)
... ...+..++.+...+.. .+..++ |+|||++|+++ .++ .|.+|++. +++...... ...+...
T Consensus 229 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~ 308 (365)
T 1jof_A 229 PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG 308 (365)
T ss_dssp EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC
T ss_pred EEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC
Confidence 321 1122222222110001 478999 99999998874 333 89999996 566543111 1112445
Q ss_pred eEEEEEec---CCCEEEEEEcC-CeEEEEECCCCe
Q 003871 683 ITYATYSC---DGKCIYVSCKS-GHVKVFDTSTLE 713 (790)
Q Consensus 683 v~~l~~s~---dg~~l~sgs~d-g~i~vwd~~~~~ 713 (790)
+..++|+| ||++|++++.+ +.|.+|+++...
T Consensus 309 ~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 309 GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred cccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 67889999 89999998875 899999998763
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=6.5e-17 Score=191.19 Aligned_cols=320 Identities=10% Similarity=-0.005 Sum_probs=206.8
Q ss_pred ccccCCC-----CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCC
Q 003871 334 CINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDS-----SCFNDNNQSRESTSLPD 403 (790)
Q Consensus 334 ~i~fspd-----~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~-----~~fs~~~~~~s~dg~~l 403 (790)
+++|+|| +.|++|+ +||+.+|++. ..+.+|.... .. ++|| |||+++
T Consensus 21 ~~~w~~dg~~~~~~~~~i~--~~~~~~~~~~--------~~~~~~~~~~-------~~~~~~~~~~S-------pdg~~l 76 (740)
T 4a5s_A 21 SLRWISDHEYLYKQENNIL--VFNAEYGNSS--------VFLENSTFDE-------FGHSINDYSIS-------PDGQFI 76 (740)
T ss_dssp CEEECSSSEEEEEETTEEE--EEETTTCCEE--------EEECTTTTTT-------CCSCCCEEEEC-------TTSSEE
T ss_pred ccEECCCCcEEEEcCCcEE--EEECCCCceE--------EEEechhhhh-------hcccccceEEC-------CCCCEE
Confidence 8999999 4488888 9999999876 5667776544 33 4568 999999
Q ss_pred cccceeccCC---------CceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 003871 404 ADSAVCAKSL---------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (790)
Q Consensus 404 a~~~at~s~d---------~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~ 474 (790)
+.++.+ +.+.+||+. ++.+..+. .|...+...+|||||+.||.+. ++.|.+|+..++.
T Consensus 77 ----~~~~~~~~~~r~~~~~~~~~~d~~----~~~~~~l~----~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 77 ----LLEYNYVKQWRHSYTASYDIYDLN----KRQLITEE----RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLP 143 (740)
T ss_dssp ----EEEEEEEECSSSCEEEEEEEEETT----TTEECCSS----CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred ----EEEECCeeeEEEccceEEEEEECC----CCcEEEcc----cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCc
Confidence 888776 455699997 45555533 4678899999999999998885 6889999987654
Q ss_pred c----cccccccccccccccCCCceeeeecccCCCC---------CCeEEEEec--CcEEEEec-C--------------
Q 003871 475 Q----SLEEENVNMESQLYQPSSKLVMTNDIAADPK---------DSISCFALR--GSHLFSAS-G-------------- 524 (790)
Q Consensus 475 ~----~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------~~V~~l~~s--~~~l~s~s-d-------------- 524 (790)
. ..|.... ... ++. .....+.|+ |+.|+.++ |
T Consensus 144 ~~~lt~~g~~~~-------------~~~-----g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~ 205 (740)
T 4a5s_A 144 SYRITWTGKEDI-------------IYN-----GITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 205 (740)
T ss_dssp CEECCSCCBTTT-------------EEE-----SBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS
T ss_pred eEEEcCCCCccc-------------eec-----CcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC
Confidence 4 0111000 000 000 111234555 55555442 1
Q ss_pred ----------------------CeEEEEECCC---Cc--EEEEEc------CCCCCeEEEEEcCCC-eEEEEeC----CC
Q 003871 525 ----------------------GKISIFSLET---FQ--TLATFA------NPPPIATYFILLPQD-LFAFGFD----DS 566 (790)
Q Consensus 525 ----------------------g~I~vwd~~~---~~--~~~~~~------~~~~~v~~l~~s~~g-~l~sgs~----dg 566 (790)
..|.+||+.+ ++ ....+. ++...+..++|+||| .++.... +.
T Consensus 206 ~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~ 285 (740)
T 4a5s_A 206 ESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYS 285 (740)
T ss_dssp TTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEE
T ss_pred CCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEE
Confidence 2688899998 73 233343 266678999999999 5555432 23
Q ss_pred cEEEEeCCCCc----eE--EEE--cCCCCCEE-----EEEEeCCCCEEE-EEeC-C--CcEEEEECCCCceeeceeeeee
Q 003871 567 SILVHCPCTKK----TK--AKL--KGHQNRIT-----CLAYSLSLNVLV-SSGA-D--AQLCVWDAVGWKKLCSKFLHSF 629 (790)
Q Consensus 567 ~I~iwd~~~~~----~~--~~l--~~h~~~v~-----~l~~spdg~~l~-s~s~-d--g~I~vwd~~~~~~~~~~~l~~~ 629 (790)
.|++||+.+|+ +. ..+ .+|...|. .++|+|||+.++ ..+. + ..|++||+.+++. .+ +
T Consensus 286 ~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~-l 359 (740)
T 4a5s_A 286 VMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TF-I 359 (740)
T ss_dssp EEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EE-S
T ss_pred EEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----Ee-c
Confidence 79999999887 22 222 34555444 789999999877 6654 3 4688899887442 12 3
Q ss_pred ccCCCCCCCCeEEEEEeCCCCEEEE-EeC-----C--cEEEEECCCCceeeeecCC--CCCCCeEEEEEecCCCEEEEEE
Q 003871 630 QTGLVPETTIVNHIQFHPDQIHLLS-IHE-----G--QIDVYEAPTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSC 699 (790)
Q Consensus 630 ~~~~~~~~~~v~~i~~sp~~~~l~~-~~d-----g--~I~iwd~~~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~sgs 699 (790)
..+. ..+..+.. +|++.++. +.. + .|+..++..+.....+... .....+..+.|||++++++...
T Consensus 360 T~g~----~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~ 434 (740)
T 4a5s_A 360 TKGT----WEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRC 434 (740)
T ss_dssp CCSS----SCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred ccCC----EEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEe
Confidence 3332 25555442 45777665 432 2 4566666544433234321 1246788999999999877554
Q ss_pred cC---CeEEEEECCCCeEEEEec
Q 003871 700 KS---GHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 700 ~d---g~i~vwd~~~~~~~~~~~ 719 (790)
.. ..+.+++..+++.+..+.
T Consensus 435 s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 435 SGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp CSBSSCEEEEEETTTTEEEEEEE
T ss_pred CCCCCCEEEEEECCCCcEEEEec
Confidence 43 478899998887665543
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=2.1e-16 Score=170.20 Aligned_cols=248 Identities=12% Similarity=0.054 Sum_probs=168.5
Q ss_pred CCCeEEEEec--CcEEEEecCCeEEEEECC-CCcEEEEEcC-CCCCeEEEEEcCCC-e--EEEEe-------------CC
Q 003871 506 KDSISCFALR--GSHLFSASGGKISIFSLE-TFQTLATFAN-PPPIATYFILLPQD-L--FAFGF-------------DD 565 (790)
Q Consensus 506 ~~~V~~l~~s--~~~l~s~sdg~I~vwd~~-~~~~~~~~~~-~~~~v~~l~~s~~g-~--l~sgs-------------~d 565 (790)
...+..++|+ +++|++++.+.|.+|++. +++....... ..+.+.+++|+|+| . ++++. .+
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 3467889999 788888883499999997 7776543321 11235568999999 5 33442 68
Q ss_pred CcEEEEeCC-CCceEEEEc----CCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECC-CCceeeceeeeeeccCCCCCCC
Q 003871 566 SSILVHCPC-TKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETT 638 (790)
Q Consensus 566 g~I~iwd~~-~~~~~~~l~----~h~~~v~~l~~spdg~~l~s~s~-dg~I~vwd~~-~~~~~~~~~l~~~~~~~~~~~~ 638 (790)
|.+.+|++. +++....+. .+...+.+++|+|||+++++++. ++.|++||+. +++......+. .+. +. .
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~-~g---~ 193 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD-APD-PG---D 193 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE-CSS-TT---C
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe-cCC-CC---C
Confidence 899999997 466544443 24567999999999998887764 6799999998 66532211111 111 12 4
Q ss_pred CeEEEEEeCCCCEEEEE--eCCcEEEEECC--CCcee---eeecC-CC----CCC------CeEEEE-EecCCCEEEEEE
Q 003871 639 IVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNHT---SQLVP-DK----MDL------PITYAT-YSCDGKCIYVSC 699 (790)
Q Consensus 639 ~v~~i~~sp~~~~l~~~--~dg~I~iwd~~--~~~~~---~~~~~-~~----h~~------~v~~l~-~s~dg~~l~sgs 699 (790)
.+..++|+|+|++++++ .++.|.+|++. +++.. ..+.. .. |.. .+..++ |+|||++|++++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 68999999999999874 46889999765 56542 12211 11 111 488999 999999988776
Q ss_pred cCC------eEEEEECC-CCeEEEEeccccccCCCCcccccceEEEEEecC--CCCEEEEEeCC-CcEEEEecCCC
Q 003871 700 KSG------HVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPL--EPNRIALGLTN-GRVHVIEPLES 765 (790)
Q Consensus 700 ~dg------~i~vwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~--d~~~las~s~D-g~i~iW~~~~~ 765 (790)
.+. .|.+|++. +|++........ .+ ..... .++|+|. ||++|++++.+ +.|.+|++...
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~----~~-~~~~~--~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLFLSP----TP-TSGGH--SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEEEEE----CS-SCCTT--CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeeeeee----cC-CCCcc--cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 532 89999996 676544211000 11 22344 7889995 58999988865 89999998765
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=5.2e-17 Score=176.28 Aligned_cols=314 Identities=11% Similarity=0.019 Sum_probs=194.1
Q ss_pred ccccchhhhhhhhccCCCcc---ccccccCCC--------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCC
Q 003871 312 PSMDKSRLLSLIKQIMDWWV---PYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG 380 (790)
Q Consensus 312 wd~~~~~~~~~l~~h~~~v~---v~~i~fspd--------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~ 380 (790)
+|..++..+..+..|..... +...+|||| ..++...||+||..+|+.. ....+|...+
T Consensus 15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~--------~lt~~~~~~~--- 83 (388)
T 3pe7_A 15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT--------QLTEGRGDNT--- 83 (388)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE--------ECCCSSCBCS---
T ss_pred ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE--------EeeeCCCCCc---
Confidence 35556666666666654332 124899999 3377777779999999875 5556666665
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEE--EcCCCCEEEE
Q 003871 381 DDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLI--YSHSGDFLVA 458 (790)
Q Consensus 381 ~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~--~spdg~~l~s 458 (790)
..++|+ |||+.| +.++.++.+++||+.. +....+. ..+...+.... ++|+|++++.
T Consensus 84 ----~~~~~s-------pdg~~l----~~~~~~~~l~~~d~~~----g~~~~~~---~~~~~~~~~~~~~~~~dg~~l~~ 141 (388)
T 3pe7_A 84 ----FGGFLS-------PDDDAL----FYVKDGRNLMRVDLAT----LEENVVY---QVPAEWVGYGTWVANSDCTKLVG 141 (388)
T ss_dssp ----SSCEEC-------TTSSEE----EEEETTTEEEEEETTT----CCEEEEE---ECCTTEEEEEEEEECTTSSEEEE
T ss_pred ----cceEEc-------CCCCEE----EEEeCCCeEEEEECCC----Ccceeee---echhhcccccceeECCCCCeecc
Confidence 678999 999999 9999899999999973 4443322 12344444333 4899987765
Q ss_pred EeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEECCCCcE
Q 003871 459 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQT 537 (790)
Q Consensus 459 ~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd~~~~~~ 537 (790)
...++. . |.+..... . | . ..+... +..|.+||+.+++.
T Consensus 142 ~~~~~~------~-----------------~~~~~~~~-~---------------~-~-~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 142 IEIRRE------D-----------------WVPLTDWK-K---------------F-H-EFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp EEEEGG------G-----------------CCCCCSHH-H---------------H-H-HHGGGCCCEEEEEEETTTCCE
T ss_pred ccccCc------c-----------------cccccccc-h---------------h-h-hhhccCCcceEEEEECCCCce
Confidence 322110 0 00000000 0 0 0 000111 35788999998865
Q ss_pred EEEEcCCCCCeEEEEEcC-CC-eEEEEeCC------CcEEEEeCCCCceEEEEcCCC--CCEEEEEEeCCCCEEEEEeCC
Q 003871 538 LATFANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGHQ--NRITCLAYSLSLNVLVSSGAD 607 (790)
Q Consensus 538 ~~~~~~~~~~v~~l~~s~-~g-~l~sgs~d------g~I~iwd~~~~~~~~~l~~h~--~~v~~l~~spdg~~l~s~s~d 607 (790)
... ..+...+..++|+| +| .|+.++.+ ..|.++|..++.. ..+..+. ..+..++|+|||+.|+..+.+
T Consensus 181 ~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 TVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred EEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecC
Confidence 443 34566789999999 99 77766653 3788888875543 3444444 357889999999987665432
Q ss_pred -C----cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE----------eCCcEEEEECCCCceee
Q 003871 608 -A----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----------HEGQIDVYEAPTLNHTS 672 (790)
Q Consensus 608 -g----~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~----------~dg~I~iwd~~~~~~~~ 672 (790)
+ .|++||+.+++... +..... +.........++|+|||+.|+.. .+..|++||+.+++..
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~---l~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~- 333 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQ---LTSMPA-CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH- 333 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEE---EEEECC-EEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-
T ss_pred CCCCcceEEEEecCCCceEE---EEcCCC-ceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-
Confidence 2 39999999876322 221111 00000001123799999988862 2457999999887653
Q ss_pred eecCCCCCC-----------CeEEEEEecCCCEEEEEEc-CCeEEEEE
Q 003871 673 QLVPDKMDL-----------PITYATYSCDGKCIYVSCK-SGHVKVFD 708 (790)
Q Consensus 673 ~~~~~~h~~-----------~v~~l~~s~dg~~l~sgs~-dg~i~vwd 708 (790)
.+.. +.. .+.+++|+|||+.|+.++. +|...+|.
T Consensus 334 ~l~~--~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 334 RVAR--HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred Eecc--ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence 3332 222 4788999999998886664 56555554
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=1.6e-16 Score=172.64 Aligned_cols=315 Identities=10% Similarity=0.015 Sum_probs=195.7
Q ss_pred ccCCCcccccccccCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCcccceecc-CC--CceEeeecc
Q 003871 351 FPTVSNLRYASSILTDKPNQEGRPLD-----ASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK-SL--EKSVNLKLQ 422 (790)
Q Consensus 351 wd~~~g~~~~~~~~~~~~~l~~h~~~-----v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s-~d--~~i~iwd~~ 422 (790)
+|..+|..+ ..+..+... + ..++|+ |||+.+ +... .+ ..+.+||+.
T Consensus 15 ~d~~~g~~~--------~~l~~~~~~~~~~~~-------~~~~~S-------pdG~~l----~~~~~~~g~~~l~~~d~~ 68 (396)
T 3c5m_A 15 VDSDTQVKV--------TRLTPTDIICHRNYF-------YQKCFT-------QDGKKL----LFAGDFDGNRNYYLLNLE 68 (396)
T ss_dssp ECTTTCCEE--------EECSCTTSCEECCCT-------TSCCBC-------TTSCEE----EEEECTTSSCEEEEEETT
T ss_pred ecCCCCcce--------EEEecCCCCccceee-------ecCcCC-------CCCCEE----EEEEecCCCceEEEEECC
Confidence 477777665 444444332 5 788999 999998 5543 33 467777876
Q ss_pred ccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeeccc
Q 003871 423 LINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA 502 (790)
Q Consensus 423 ~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~ 502 (790)
++....+.. ++......+.|+|||++|+.++.++.+.+|++.++.. .....
T Consensus 69 ----~~~~~~l~~---~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~---------------------~~~~~- 119 (396)
T 3c5m_A 69 ----TQQAVQLTE---GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE---------------------QVIYT- 119 (396)
T ss_dssp ----TTEEEECCC---SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE---------------------EEEEE-
T ss_pred ----CCcEEEeec---CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc---------------------EEEEe-
Confidence 355444331 2222233478999999999999999999998765432 11000
Q ss_pred CCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEE-----eCCCcEEEEeC
Q 003871 503 ADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-----FDDSSILVHCP 573 (790)
Q Consensus 503 ~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg-----s~dg~I~iwd~ 573 (790)
.+.. |+ |+.|+... ++...+|. ..+.|+|++ .++.+ ..+..|++||+
T Consensus 120 -~~~~------~~~~g~~l~~~~~~~~~~~~~-----------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~ 175 (396)
T 3c5m_A 120 -VDEE------WKGYGTWVANSDCTKLVGIEI-----------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDI 175 (396)
T ss_dssp -CCTT------EEEEEEEEECTTSSEEEEEEE-----------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEET
T ss_pred -cccc------cCCCCCEEEeccCCccccccc-----------------cccccCCCCcceeeeeeccCCCcceEEEEEC
Confidence 1111 33 55566555 44443332 124578888 55543 45678999999
Q ss_pred CCCceEEEEcCCCCCEEEEEEeC-CCCEEEEEeCC------CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEe
Q 003871 574 CTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 646 (790)
Q Consensus 574 ~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~s~s~d------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~s 646 (790)
.+++..... .+...+..+.|+| +++.|+.++.+ ..|.+||+.+++. .. +..... ...+..++|+
T Consensus 176 ~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~---l~~~~~--~~~~~~~~~s 246 (396)
T 3c5m_A 176 ETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV---RK---IKEHAE--GESCTHEFWI 246 (396)
T ss_dssp TTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC---EE---SSCCCT--TEEEEEEEEC
T ss_pred CCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce---eE---eeccCC--CccccceEEC
Confidence 988765444 4667899999999 88877776653 3688899876431 11 222110 0357889999
Q ss_pred CCCCEEEE-EeC-----CcEEEEECCCCceeeeecCCCCCCCeEEEEEec-CCCEEEEEE----------------cCCe
Q 003871 647 PDQIHLLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSC----------------KSGH 703 (790)
Q Consensus 647 p~~~~l~~-~~d-----g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs----------------~dg~ 703 (790)
|+|++|+. +.+ +.|++||+.+++....... . ... +.|+| ||+++++++ .++.
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~ 321 (396)
T 3c5m_A 247 PDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM---P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF 321 (396)
T ss_dssp TTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC---C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred CCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC---C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence 99998776 332 3499999988875443321 1 133 89999 999888765 3478
Q ss_pred EEEEECCCCeEEEEeccccccC---CCCcccccceEEEEEecCCCCEEEEEeC-CCcEEEEec
Q 003871 704 VKVFDTSTLELRCQINLTAYAQ---PGTISLELYPLVIAAHPLEPNRIALGLT-NGRVHVIEP 762 (790)
Q Consensus 704 i~vwd~~~~~~~~~~~~~~~~~---~gh~~~~v~~~~v~~sp~d~~~las~s~-Dg~i~iW~~ 762 (790)
|++||+.+++...... +.... .+.....+. .++|+| ||+.|+.++. ++...||.+
T Consensus 322 i~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~--~~~~s~-dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 322 LYVLNTKAKSAQKLCK-HSTSWDVLDGDRQITHP--HPSFTP-NDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp EEEEETTTTBCCEEEE-CCCCCCCBTTBSSTTCC--CCEECT-TSSEEEEEECTTSSCEEEEE
T ss_pred EEEEecccCceEEccC-CCCccccccccccCCCC--CceEcc-CCCeEEEEecCCCCceEEEE
Confidence 9999999887543221 10000 000000123 678999 8988877764 555555554
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.72 E-value=1.3e-15 Score=163.29 Aligned_cols=283 Identities=14% Similarity=0.089 Sum_probs=192.5
Q ss_pred CCCceEeeeccccCCCCce-eeeeccCCCCCCceEEEEEcCCCCEEEEEeC----------CCcEEEEecCCCCcccccc
Q 003871 412 SLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATHKLWKWQSNKQSLEEE 480 (790)
Q Consensus 412 ~d~~i~iwd~~~~~~~~~~-~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~----------dg~i~vw~~~~~~~~~g~~ 480 (790)
.|+.|.+||... ++. ..+. .+..+ .++|+|||+++++++. ++.|.+||..+...
T Consensus 29 ~d~~v~v~D~~t----~~~~~~i~----~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~----- 93 (361)
T 2oiz_A 29 TESRVHVYDYTN----GKFLGMVP----TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF----- 93 (361)
T ss_dssp GGCEEEEEETTT----CCEEEEEE----CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-----
T ss_pred ccCeEEEEECCC----CeEEEEec----CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-----
Confidence 478999999863 333 3333 23333 8999999999999873 56799998765432
Q ss_pred ccccccccccCCCceeeeec-ccC---CCCCCeEEEEec--CcEEEEec---CCeEEEEECCCCcEEEE-EcCCCCCeEE
Q 003871 481 NVNMESQLYQPSSKLVMTND-IAA---DPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLAT-FANPPPIATY 550 (790)
Q Consensus 481 ~~~~~~~i~~~~~~~~~~~~-~~~---~~~~~V~~l~~s--~~~l~s~s---dg~I~vwd~~~~~~~~~-~~~~~~~v~~ 550 (790)
.... ... .+......++++ |++|++++ ++.|.+||+.+++.+.. +... ....
T Consensus 94 ----------------~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~ 155 (361)
T 2oiz_A 94 ----------------EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWS 155 (361)
T ss_dssp ----------------EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEE
T ss_pred ----------------EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--Ccce
Confidence 1110 000 123456678898 88888775 47899999999988887 5432 2233
Q ss_pred EEEcCCC--eEEEEeCCCcEEEEeCCC-CceEEE------EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Q 003871 551 FILLPQD--LFAFGFDDSSILVHCPCT-KKTKAK------LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (790)
Q Consensus 551 l~~s~~g--~l~sgs~dg~I~iwd~~~-~~~~~~------l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 621 (790)
+.+.|++ .+++.+.||.+.+|+... ++.... +..+..++ .+.++|++..++..+.++.|.++|+......
T Consensus 156 v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~ 234 (361)
T 2oiz_A 156 VIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVK 234 (361)
T ss_dssp EEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCE
T ss_pred eEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCce
Confidence 6678877 788889999999999865 554422 22222222 3345678888888889999999999764321
Q ss_pred eceeeee-----eccCCCCCCCCeEEEEEeCCCCEEEEE-e-----------CCcEEEEECCCCceeeeecCCCCCCCeE
Q 003871 622 CSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLSI-H-----------EGQIDVYEAPTLNHTSQLVPDKMDLPIT 684 (790)
Q Consensus 622 ~~~~l~~-----~~~~~~~~~~~v~~i~~sp~~~~l~~~-~-----------dg~I~iwd~~~~~~~~~~~~~~h~~~v~ 684 (790)
....... ...+..+ .....++|+|+++.++++ . .+.|.+||+.+++.+.++..+ . +.
T Consensus 235 ~~~~~~~~~~~~~~~~~~p--~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~--~--p~ 308 (361)
T 2oiz_A 235 VDGPWSLLNDEDKAKNWVP--GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR--D--AL 308 (361)
T ss_dssp EEEEEESCCHHHHHTTCEE--CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT--T--CC
T ss_pred ecccccccCcccccccccc--CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC--C--ee
Confidence 1111110 0000000 122237899998888874 3 247999999999999998752 3 99
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEeccccccCCCCcccccceEEEEEecCCCC
Q 003871 685 YATYSCDGKCIYVSCKSGHVKVFDTSTL--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 746 (790)
Q Consensus 685 ~l~~s~dg~~l~sgs~dg~i~vwd~~~~--~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 746 (790)
+++|+|||++|++++. +.|.+||..++ +.+..+... | .. +..++++| +|.
T Consensus 309 ~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~-----G---~~--P~~~~~~p-~G~ 360 (361)
T 2oiz_A 309 SMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA-----A---EA--SLQVQFHP-VGG 360 (361)
T ss_dssp EEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS-----C---SS--EEEEEECC-CSC
T ss_pred EEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC-----C---CC--cEEEEecC-CCC
Confidence 9999999999998887 99999999999 888886422 2 22 44899999 664
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=2e-14 Score=148.75 Aligned_cols=240 Identities=10% Similarity=0.068 Sum_probs=174.9
Q ss_pred CCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcC------CCCCeEEEEE-cCCC-eEEEEeC-CCcEEEE
Q 003871 504 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN------PPPIATYFIL-LPQD-LFAFGFD-DSSILVH 571 (790)
Q Consensus 504 ~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~------~~~~v~~l~~-s~~g-~l~sgs~-dg~I~iw 571 (790)
++-..+.+++++ ++++++.. ++.|.+||.. ++.+..+.. +...+..+++ .+++ .+++... ++.|++|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678899998 67666666 8999999987 666666642 3346789999 4677 5555433 7899999
Q ss_pred eCCCCceEEEEcC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeecc-CCCCCCCCeEEEEEeCCC
Q 003871 572 CPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPDQ 649 (790)
Q Consensus 572 d~~~~~~~~~l~~-h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~-~~~~~~~~v~~i~~sp~~ 649 (790)
| .+++.+..+.. +...+.+++++|+|+++++...++.|.+||... + .+..+.. .+. ..+..++++|+|
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-----~~~~~~~~~~~---~~p~~i~~~~~g 175 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-N-----VLHKFGCSKHL---EFPNGVVVNDKQ 175 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-C-----EEEEEECTTTC---SSEEEEEECSSS
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-C-----EEEEeCCCCcc---CCcEEEEECCCC
Confidence 9 56777766643 446789999999999888888889999999764 2 1221211 222 468999999999
Q ss_pred CEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEeccccccCCC
Q 003871 650 IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-HVKVFDTSTLELRCQINLTAYAQPG 727 (790)
Q Consensus 650 ~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg-~i~vwd~~~~~~~~~~~~~~~~~~g 727 (790)
+++++. .++.|++||. +++.+..+....+...+..++++++|+++++...++ .|.+||. +++.+..+...
T Consensus 176 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~------ 247 (286)
T 1q7f_A 176 EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK------ 247 (286)
T ss_dssp EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES------
T ss_pred CEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc------
Confidence 877665 6889999998 466666665433346789999999999888888776 9999995 46666655421
Q ss_pred CcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 728 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 728 h~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
.....+.+++++| +|+++++ +.|++|++|++....
T Consensus 248 --~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 248 --VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp --SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred --CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEccccc
Confidence 1111244899999 8887777 679999999986644
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=2.3e-16 Score=171.40 Aligned_cols=306 Identities=9% Similarity=0.007 Sum_probs=195.7
Q ss_pred cccchhhhhhhhccCC-----CccccccccCCC--------CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCC
Q 003871 313 SMDKSRLLSLIKQIMD-----WWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (790)
Q Consensus 313 d~~~~~~~~~l~~h~~-----~v~v~~i~fspd--------~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~ 379 (790)
|..+++.+..+..+.. .+. .++|||| ..++...||+||..+++.. ....++....
T Consensus 16 d~~~g~~~~~l~~~~~~~~~~~~~--~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~--------~l~~~~~~~~-- 83 (396)
T 3c5m_A 16 DSDTQVKVTRLTPTDIICHRNYFY--QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV--------QLTEGKGDNT-- 83 (396)
T ss_dssp CTTTCCEEEECSCTTSCEECCCTT--SCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE--------ECCCSSCBCT--
T ss_pred cCCCCcceEEEecCCCCccceeee--cCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE--------EeecCCCCcc--
Confidence 5566665555544433 245 8999999 3345555669999888764 3333333333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEE
Q 003871 380 GDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL 459 (790)
Q Consensus 380 ~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~ 459 (790)
..+.|+ |||+.+ +.++.++.+.+||+. ++....+.- .+.. |+|+|+.|+..
T Consensus 84 -----~~~~~s-------pdg~~l----~~~~~~~~l~~~d~~----~~~~~~~~~---~~~~------~~~~g~~l~~~ 134 (396)
T 3c5m_A 84 -----FGGFIS-------TDERAF----FYVKNELNLMKVDLE----TLEEQVIYT---VDEE------WKGYGTWVANS 134 (396)
T ss_dssp -----TTCEEC-------TTSSEE----EEEETTTEEEEEETT----TCCEEEEEE---CCTT------EEEEEEEEECT
T ss_pred -----ccceEC-------CCCCEE----EEEEcCCcEEEEECC----CCCcEEEEe---cccc------cCCCCCEEEec
Confidence 457899 999999 888888999999997 344444331 1222 77888888777
Q ss_pred eCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEe-----c-CCeEEEEECC
Q 003871 460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSA-----S-GGKISIFSLE 533 (790)
Q Consensus 460 ~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~-----s-dg~I~vwd~~ 533 (790)
+.+....+|.... .|.+. ++.++.+ . +..|.+||+.
T Consensus 135 ~~~~~~~~~~~~~---------------~~spd-----------------------g~~~~~~~~~~~~~~~~l~~~d~~ 176 (396)
T 3c5m_A 135 DCTKLVGIEILKR---------------DWQPL-----------------------TSWEKFAEFYHTNPTCRLIKVDIE 176 (396)
T ss_dssp TSSEEEEEEEEGG---------------GCCCC-----------------------CSHHHHHHHHHTCCCEEEEEEETT
T ss_pred cCCcccccccccc---------------ccCCC-----------------------CcceeeeeeccCCCcceEEEEECC
Confidence 6666555553210 01110 2222221 2 4578899999
Q ss_pred CCcEEEEEcCCCCCeEEEEEcC-CC-eEEEEeCC------CcEEEEeCCCCceEEEEcCC--CCCEEEEEEeCCCCEEEE
Q 003871 534 TFQTLATFANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGH--QNRITCLAYSLSLNVLVS 603 (790)
Q Consensus 534 ~~~~~~~~~~~~~~v~~l~~s~-~g-~l~sgs~d------g~I~iwd~~~~~~~~~l~~h--~~~v~~l~~spdg~~l~s 603 (790)
+++..... .+...+..+.|+| ++ .++..+.+ ..|++||+.+++.. .+..+ ...+..++|+|||++|+.
T Consensus 177 ~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~ 254 (396)
T 3c5m_A 177 TGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAY 254 (396)
T ss_dssp TCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEE
T ss_pred CCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEE
Confidence 88765544 4566789999999 77 66666543 36889998765533 33333 235888999999998877
Q ss_pred EeCC-----CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeC-CCCEEEEEe-----------------CCcE
Q 003871 604 SGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSIH-----------------EGQI 660 (790)
Q Consensus 604 ~s~d-----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~-----------------dg~I 660 (790)
++.+ +.|++||+.+++... +. .. .... +.|+| +|++++++. ++.|
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~~~---l~---~~-----~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i 322 (396)
T 3c5m_A 255 VSYFKGQTDRVIYKANPETLENEE---VM---VM-----PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFL 322 (396)
T ss_dssp EEEETTTCCEEEEEECTTTCCEEE---EE---EC-----CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEE
T ss_pred EecCCCCccceEEEEECCCCCeEE---ee---eC-----CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcE
Confidence 7544 449999998865321 21 11 1223 89999 999888632 3679
Q ss_pred EEEECCCCceeeeecCCCCCC-----------CeEEEEEecCCCEEEEEEc-CC--eEEEEECCCCeE
Q 003871 661 DVYEAPTLNHTSQLVPDKMDL-----------PITYATYSCDGKCIYVSCK-SG--HVKVFDTSTLEL 714 (790)
Q Consensus 661 ~iwd~~~~~~~~~~~~~~h~~-----------~v~~l~~s~dg~~l~sgs~-dg--~i~vwd~~~~~~ 714 (790)
++||+.+++.. .+.. +.. .+..++|+|||++|+.++. ++ .|+.+++.+++.
T Consensus 323 ~~~d~~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 323 YVLNTKAKSAQ-KLCK--HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp EEEETTTTBCC-EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred EEEecccCceE-EccC--CCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 99999887653 3332 122 2567899999999887765 34 455566666543
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=9.8e-15 Score=154.61 Aligned_cols=246 Identities=14% Similarity=0.102 Sum_probs=180.6
Q ss_pred CCCCeEEEEec--CcEEEEec-C------------------------CeEEEEECCCCcEEEEEc-CCCCCeEEEEEcCC
Q 003871 505 PKDSISCFALR--GSHLFSAS-G------------------------GKISIFSLETFQTLATFA-NPPPIATYFILLPQ 556 (790)
Q Consensus 505 ~~~~V~~l~~s--~~~l~s~s-d------------------------g~I~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~ 556 (790)
.-..+.+++++ |+++++.. + +.|.+||..+++....+. ++......++++|+
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 35678999999 77777766 4 379999999998877664 34457889999999
Q ss_pred C-eEEEEeCCCcEEEEeCCCCc-eEEEE---------cCCCCCEEEEEEeC-CCCEEEEEe-CCCcEEEEECCCCceeec
Q 003871 557 D-LFAFGFDDSSILVHCPCTKK-TKAKL---------KGHQNRITCLAYSL-SLNVLVSSG-ADAQLCVWDAVGWKKLCS 623 (790)
Q Consensus 557 g-~l~sgs~dg~I~iwd~~~~~-~~~~l---------~~h~~~v~~l~~sp-dg~~l~s~s-~dg~I~vwd~~~~~~~~~ 623 (790)
| ++++.+.++.|++||..... .+..+ .++......++++| +++++++.+ .++.|++||... +....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence 9 88888889999999986442 45555 23445789999999 788888886 689999999543 32211
Q ss_pred eeeeeecc------CCCCCCCCeEEEEEeCC-CCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEE
Q 003871 624 KFLHSFQT------GLVPETTIVNHIQFHPD-QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI 695 (790)
Q Consensus 624 ~~l~~~~~------~~~~~~~~v~~i~~sp~-~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 695 (790)
+..... ++. .....++++|+ +.++++. .++.|++||..+++.+..+....+...+..++|+| +..+
T Consensus 181 --~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~ 254 (329)
T 3fvz_A 181 --WGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLF 254 (329)
T ss_dssp --ECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEE
T ss_pred --eccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEE
Confidence 110000 111 34789999999 5555554 67889999998899988886555677899999999 4333
Q ss_pred EEE-------EcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 696 YVS-------CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 696 ~sg-------s~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
++. ..+..|++||..+++.+..+... .++ ... +.+++++| +|.++++...+++|++|++...
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~~-~~~--p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV----RKH-FDM--PHDIVASE-DGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTCCEEEEECCS----SSC-CSS--EEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC----CCc-cCC--eeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence 333 34468999999999988876421 022 222 45999999 8888899899999999998653
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=2.4e-13 Score=153.31 Aligned_cols=321 Identities=12% Similarity=0.083 Sum_probs=218.7
Q ss_pred CCCCCCcccceeccCCCceEeeeccccCCCCce-eeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecC--CCC
Q 003871 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ--SNK 474 (790)
Q Consensus 398 ~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~-~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~--~~~ 474 (790)
|++..+ ++...+++|.++|... +++ ..+. ....+..+.|||||+++++++.|+.|.+||+. +..
T Consensus 165 ~~~~~~----V~~~~~~~V~viD~~t----~~v~~~i~-----~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~ 231 (567)
T 1qks_A 165 LENLFS----VTLRDAGQIALIDGST----YEIKTVLD-----TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT 231 (567)
T ss_dssp GGGEEE----EEETTTTEEEEEETTT----CCEEEEEE-----CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC
T ss_pred CCceEE----EEeCCCCeEEEEECCC----CeEEEEEe-----CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc
Confidence 445555 8888999999999973 444 3433 23457799999999999999999999999974 322
Q ss_pred ccccccccccccccccCCCceeeeecccCCCCCCeEEEEec------CcEEEEec--CCeEEEEECCCCcEEEEEcCC--
Q 003871 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSLETFQTLATFANP-- 544 (790)
Q Consensus 475 ~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s------~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~-- 544 (790)
...... .......++|+ |+++++++ +++|.++|..+.+.+.++...
T Consensus 232 ---------------------~v~~i~---~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~ 287 (567)
T 1qks_A 232 ---------------------TVAEIK---IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 287 (567)
T ss_dssp ---------------------EEEEEE---CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE
T ss_pred ---------------------EeEEEe---cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccc
Confidence 111111 22335677776 67888777 799999999999988877521
Q ss_pred ---------CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceE--EEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcE
Q 003871 545 ---------PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK--AKLKGHQNRITCLAYSLSLNVLVSSG-ADAQL 610 (790)
Q Consensus 545 ---------~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~--~~l~~h~~~v~~l~~spdg~~l~s~s-~dg~I 610 (790)
...+..+..++++ .++....+|.|.++|..+.+.. ..+. ......++.|+|+|++++++. .++.|
T Consensus 288 ~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V 366 (567)
T 1qks_A 288 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKL 366 (567)
T ss_dssp CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEE
T ss_pred ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeE
Confidence 2267888999988 6666677899999998875432 2222 334577899999999876655 57899
Q ss_pred EEEECCCCceeeceeeeeecc-CCCCCCCCeEEEEEeCCCCEE-EEE--eCCcEEEEECCC-------CceeeeecCCCC
Q 003871 611 CVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPDQIHL-LSI--HEGQIDVYEAPT-------LNHTSQLVPDKM 679 (790)
Q Consensus 611 ~vwd~~~~~~~~~~~l~~~~~-~~~~~~~~v~~i~~sp~~~~l-~~~--~dg~I~iwd~~~-------~~~~~~~~~~~h 679 (790)
.++|+.+++.... +.. +..+|.+.-..+ ++|++..+ +++ .++.|.++|..+ .+.++++...
T Consensus 367 ~ViD~~t~kl~~~-----i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-- 438 (567)
T 1qks_A 367 VVIDTKEGKLVAI-----EDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-- 438 (567)
T ss_dssp EEEETTTTEEEEE-----EECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--
T ss_pred EEEECCCCcEEEE-----EeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC--
Confidence 9999999765433 222 222211222222 68875544 455 468999999987 5677777653
Q ss_pred CCCeEEEEEecCCCEEEEEEc-------CCeEEEEECCCC-----eEE-EEeccc--cccCCCCcccccceEEEEEecCC
Q 003871 680 DLPITYATYSCDGKCIYVSCK-------SGHVKVFDTSTL-----ELR-CQINLT--AYAQPGTISLELYPLVIAAHPLE 744 (790)
Q Consensus 680 ~~~v~~l~~s~dg~~l~sgs~-------dg~i~vwd~~~~-----~~~-~~~~~~--~~~~~gh~~~~v~~~~v~~sp~d 744 (790)
...-..+..+|+++++++... .++|.++|+.+. ... ..+... ..++.| ... +..+.|+| +
T Consensus 439 g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~-~ 513 (567)
T 1qks_A 439 GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG--QPR--VVQGEFNK-D 513 (567)
T ss_dssp CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS--CCE--EEEEEECT-T
T ss_pred CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC--Ccc--eEeeeECC-C
Confidence 233355778999999998763 469999999876 211 232210 011112 223 45999999 7
Q ss_pred CCEEEEEe-----CCCcEEEEecCCCcccc
Q 003871 745 PNRIALGL-----TNGRVHVIEPLESEVEW 769 (790)
Q Consensus 745 ~~~las~s-----~Dg~i~iW~~~~~~~~w 769 (790)
|+.+..+. .++.|.|+|..+++..-
T Consensus 514 G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 543 (567)
T 1qks_A 514 GTEVWFSVWNGKDQESALVVVDDKTLELKH 543 (567)
T ss_dssp SSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred CCEEEEEeecCCCCCCcEEEEECCCceEEE
Confidence 88766552 37999999999987653
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=8.6e-14 Score=143.97 Aligned_cols=243 Identities=11% Similarity=0.100 Sum_probs=175.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEe-c--
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL-R-- 515 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~-s-- 515 (790)
++-..+.+++++++|+.+++...++.|.+|+...... +... ......++...+.++++ .
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~-------------~~~~-----~~~~~~~~~~~p~~i~~~~~~ 88 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK-------------FQFG-----ECGKRDSQLLYPNRVAVVRNS 88 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE-------------EEEC-----CBSSSTTCBSSEEEEEEETTT
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEE-------------EEec-----ccCCCcccccCceEEEEEcCC
Confidence 4567799999999999777777889999998653211 0000 00000134467889999 4
Q ss_pred CcEEEEec--CCeEEEEECCCCcEEEEEcC-CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEc--CCCCCE
Q 003871 516 GSHLFSAS--GGKISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRI 589 (790)
Q Consensus 516 ~~~l~s~s--dg~I~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~--~h~~~v 589 (790)
+.++++.. ++.|.+|| .+++.+..+.. +...+.+++++|+| .+++...++.|++||.. ++.+..+. ++...+
T Consensus 89 g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 89 GDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFP 166 (286)
T ss_dssp TEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSE
T ss_pred CeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCc
Confidence 55555553 78999999 56777777743 34568999999999 77777788999999964 66666653 345678
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeecc-CCCCCCCCeEEEEEeCCCCEEEEE-eCC-cEEEEECC
Q 003871 590 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPDQIHLLSI-HEG-QIDVYEAP 666 (790)
Q Consensus 590 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~-~~~~~~~~v~~i~~sp~~~~l~~~-~dg-~I~iwd~~ 666 (790)
.+++++|+|+++++.+.++.|++||.... .+..+.. ++. ..+..++++|+|+++++. .++ .|.+||.
T Consensus 167 ~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~~~g~~---~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~- 236 (286)
T 1q7f_A 167 NGVVVNDKQEIFISDNRAHCVKVFNYEGQ------YLRQIGGEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQ- 236 (286)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEETTCC------EEEEESCTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECT-
T ss_pred EEEEECCCCCEEEEECCCCEEEEEcCCCC------EEEEEccCCcc---CCCcEEEECCCCCEEEEeCCCCEEEEEECC-
Confidence 99999999998888888999999998652 2221221 222 368899999999888875 454 8999996
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003871 667 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 667 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
+++.+..+........+.+++++|+|+++++ +.|+.|++|++...
T Consensus 237 ~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 237 DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 5777777654333445889999999987776 67999999997653
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=3.8e-15 Score=173.96 Aligned_cols=292 Identities=10% Similarity=-0.055 Sum_probs=188.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceec--cCCCceEeeeccccCCCCceeeeeccCCCCCCceE-
Q 003871 369 NQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCA--KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVV- 445 (790)
Q Consensus 369 ~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~--s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~- 445 (790)
.+.+|...+ ..++|+ +++.++ ++. +.++...||.... .+....+. .|...+.
T Consensus 18 ~~~~~~~~~-------~~~~~s-------~~~~~~----~~~~~~~~~~~~l~~~~~---~~~~~~l~----~~~~~~~~ 72 (662)
T 3azo_A 18 LVASRSGRP-------ACVGAV-------GDEVWW----VAPRPAEAGRATLVRRRA---DGAEESAL----PAPWNVRN 72 (662)
T ss_dssp HHHHTCSCC-------EEEEEE-------TTEEEE----EEEETTTTTEEEEEEECT---TSCEEESS----CTTCCBCC
T ss_pred HHhhcCCcc-------ceeEEc-------CCeEEE----EecCcccCCcEEEEEECC---CCCcceeC----CCCccccc
Confidence 345677777 899998 766666 666 6688999999742 34444443 2444444
Q ss_pred --------EEEEc--CCCCE-EEEEeC-CCcEEEEecC--C-CCccccccccccccccccCCCceeeeeccc--CCCCCC
Q 003871 446 --------RLIYS--HSGDF-LVALTQ-TATHKLWKWQ--S-NKQSLEEENVNMESQLYQPSSKLVMTNDIA--ADPKDS 508 (790)
Q Consensus 446 --------~l~~s--pdg~~-l~s~~~-dg~i~vw~~~--~-~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~ 508 (790)
...|+ |||++ |+.++. +..|.+|+.. + +. ....... ..+...
T Consensus 73 ~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~---------------------~~~l~~~~~~~~~~~ 131 (662)
T 3azo_A 73 RVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV---------------------PRPLTPVSAVGGGLR 131 (662)
T ss_dssp CGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC---------------------CEECSCCCCSTTCEE
T ss_pred cccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC---------------------CEeccCCccCCCCcc
Confidence 55565 99998 776655 4455555543 1 11 1111100 015667
Q ss_pred eEEEEec--CcEEEEec-C----------CeEEEEECCC------CcEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCC--
Q 003871 509 ISCFALR--GSHLFSAS-G----------GKISIFSLET------FQTLATFA-NPPPIATYFILLPQD-LFAFGFDD-- 565 (790)
Q Consensus 509 V~~l~~s--~~~l~s~s-d----------g~I~vwd~~~------~~~~~~~~-~~~~~v~~l~~s~~g-~l~sgs~d-- 565 (790)
+.+++|+ |+.|++++ + ..|.+||+.+ ++. ..+. .+...+..++|+||| .|+.++.+
T Consensus 132 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~ 210 (662)
T 3azo_A 132 WADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHP 210 (662)
T ss_dssp EEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTT
T ss_pred ccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCC
Confidence 8899999 88888877 5 5899999987 554 4555 556677889999999 88877644
Q ss_pred ------CcEEEEeCC-CC---ceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC--cEEEEECCCCceeeceeeeeeccCC
Q 003871 566 ------SSILVHCPC-TK---KTKAKLKGHQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGL 633 (790)
Q Consensus 566 ------g~I~iwd~~-~~---~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg--~I~vwd~~~~~~~~~~~l~~~~~~~ 633 (790)
..|++||+. ++ +......+|...+..++|+|||+++++++.++ .|.+||+.+++... +..++
T Consensus 211 ~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~------l~~~~ 284 (662)
T 3azo_A 211 RMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ------LCRRE 284 (662)
T ss_dssp CCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE------SSCCS
T ss_pred CCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee------ccccc
Confidence 379999998 57 44444445678899999999999888888888 56666765644211 22222
Q ss_pred CCC-----CCCeEEEEEeCCCCEEEEEeCCcEEEE--ECCCCceeeeecCCCCCCCeEEEEEecCCCE--EEEEEcCC--
Q 003871 634 VPE-----TTIVNHIQFHPDQIHLLSIHEGQIDVY--EAPTLNHTSQLVPDKMDLPITYATYSCDGKC--IYVSCKSG-- 702 (790)
Q Consensus 634 ~~~-----~~~v~~i~~sp~~~~l~~~~dg~I~iw--d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~--l~sgs~dg-- 702 (790)
... .-.+.+++|+|++++++++.++.++|| |+.+++ +..+.. +...+..+ ++++++. +++++.+.
T Consensus 285 ~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~--~~~~~~~~-~s~~~~~~~~~~~~~~~~~ 360 (662)
T 3azo_A 285 EEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAG--PWTEWAAT-LTVSGTRAVGVAASPRTAY 360 (662)
T ss_dssp SBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCS--SCCEEEEE-EEEETTEEEEEEEETTEEE
T ss_pred ccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecC--CCCeEEEE-EecCCCEEEEEEcCCCCCC
Confidence 100 001567899999998888633888888 665555 555543 35556665 1444543 33444443
Q ss_pred eEEEEECCCCeEEEE
Q 003871 703 HVKVFDTSTLELRCQ 717 (790)
Q Consensus 703 ~i~vwd~~~~~~~~~ 717 (790)
.|++||+.+++....
T Consensus 361 ~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 361 EVVELDTVTGRARTI 375 (662)
T ss_dssp EEEEEETTTCCEEEE
T ss_pred EEEEEECCCCceEEe
Confidence 577778878876544
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=1.2e-14 Score=169.75 Aligned_cols=284 Identities=12% Similarity=0.011 Sum_probs=183.4
Q ss_pred CCCCceEEEEEcCCCCEEEEE--eCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeE------
Q 003871 439 SFGGRVVRLIYSHSGDFLVAL--TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS------ 510 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~--~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~------ 510 (790)
+|...+..++|++++-+++.. +.++...||....+.. ..+.. .+...+.
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------------~~~l~---~~~~~~~~~~~~~ 77 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA--------------------EESAL---PAPWNVRNRVFEY 77 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC--------------------EEESS---CTTCCBCCCGGGT
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC--------------------cceeC---CCCcccccccccc
Confidence 478899999999887666666 4478899998632211 11111 1222222
Q ss_pred ---EEEec----CcE-EEEec--CCeEEEEECC--CCcEEEEEcC-----CCCCeEEEEEcCCC-eEEEEeCC-------
Q 003871 511 ---CFALR----GSH-LFSAS--GGKISIFSLE--TFQTLATFAN-----PPPIATYFILLPQD-LFAFGFDD------- 565 (790)
Q Consensus 511 ---~l~~s----~~~-l~s~s--dg~I~vwd~~--~~~~~~~~~~-----~~~~v~~l~~s~~g-~l~sgs~d------- 565 (790)
...|+ |+. |+.++ +..|.++++. +......+.. +...+.+++|+||| .|++++.+
T Consensus 78 ~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~ 157 (662)
T 3azo_A 78 SGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPS 157 (662)
T ss_dssp CCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTT
T ss_pred CCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCC
Confidence 33332 676 77666 4667777765 2033455554 55678899999999 88888776
Q ss_pred ---CcEEEEeCCC------CceEEEEc-CCCCCEEEEEEeCCCCEEEEEeCC--------CcEEEEECC-CCceeeceee
Q 003871 566 ---SSILVHCPCT------KKTKAKLK-GHQNRITCLAYSLSLNVLVSSGAD--------AQLCVWDAV-GWKKLCSKFL 626 (790)
Q Consensus 566 ---g~I~iwd~~~------~~~~~~l~-~h~~~v~~l~~spdg~~l~s~s~d--------g~I~vwd~~-~~~~~~~~~l 626 (790)
..|++||+.+ ++. ..+. .+...+..++|||||++|+.++.+ ..|++||+. ++... ..
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~---~~ 233 (662)
T 3azo_A 158 DVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA---DT 233 (662)
T ss_dssp CEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE---EE
T ss_pred CceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc---cc
Confidence 5899999987 544 4555 566778889999999999987755 379999998 55211 11
Q ss_pred eeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCC--cEEEEECCCCceeeeecCCCCCCC--------eEEEEEecCCCEE
Q 003871 627 HSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEAPTLNHTSQLVPDKMDLP--------ITYATYSCDGKCI 695 (790)
Q Consensus 627 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg--~I~iwd~~~~~~~~~~~~~~h~~~--------v~~l~~s~dg~~l 695 (790)
..+..++. ..+..++|+|||++++++ .++ .|++||+.+++....... +... +..++|+|+++++
T Consensus 234 ~~l~~~~~---~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~--~~~~~~p~w~~~~~~~~~~~~~~~~ 308 (662)
T 3azo_A 234 RTLLGGPE---EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR--EEEFAGPLWTPGMRWFAPLANGLIA 308 (662)
T ss_dssp EEEEEETT---BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC--SSBSSCCCCSTTCCSEEECTTSCEE
T ss_pred EEeCCCCC---ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc--cccccCccccccCceEeEeCCCEEE
Confidence 22333333 578999999999966665 556 678888767765433321 1111 5678999999999
Q ss_pred EEEEcCCeEEEE--ECCCCeEEEEeccccccCCCCcccccceEEE-EEecCCCCEEEEEeCCC--cEEEEecCCCcc
Q 003871 696 YVSCKSGHVKVF--DTSTLELRCQINLTAYAQPGTISLELYPLVI-AAHPLEPNRIALGLTNG--RVHVIEPLESEV 767 (790)
Q Consensus 696 ~sgs~dg~i~vw--d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v-~~sp~d~~~las~s~Dg--~i~iW~~~~~~~ 767 (790)
++++. +.+++| |..+++ ...+. +| ...+. .+ ++++ +.-++++++.+. .|++|++.+++.
T Consensus 309 ~~~~~-~~~~l~~~d~~~~~-~~~l~-------~~-~~~~~--~~~s~~~-~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 309 VVHGK-GAAVLGILDPESGE-LVDAA-------GP-WTEWA--ATLTVSG-TRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp EEEBS-SSCEEEEEETTTTE-EEECC-------SS-CCEEE--EEEEEET-TEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEc-CccEEEEEECCCCc-EEEec-------CC-CCeEE--EEEecCC-CEEEEEEcCCCCCCEEEEEECCCCce
Confidence 99998 999998 666666 44443 22 33344 44 4444 233344555554 455556666653
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.65 E-value=3.7e-13 Score=142.56 Aligned_cols=270 Identities=10% Similarity=0.020 Sum_probs=179.0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
++++|+ +++..+ +..+.++.++.|.- .....+. .+...+.+++|+|+|+.++++..++.
T Consensus 9 ~~~~~~-------~~~~~~----~~~~~~~~~~~~~~------~~~~~~~----~~~~~~~~~~~~~~g~l~~~~~~~~~ 67 (333)
T 2dg1_A 9 PTLFYS-------GKSNSA----VPIISESELQTITA------EPWLEIS----KKGLQLEGLNFDRQGQLFLLDVFEGN 67 (333)
T ss_dssp CBCCSC-------GGGGCS----SCCCCGGGSCEEEC------EEEEEEE----SSCCCEEEEEECTTSCEEEEETTTCE
T ss_pred ceeeec-------CCccce----eEEeecccCccccc------ceeEEEe----ccCccccCcEECCCCCEEEEECCCCE
Confidence 889998 888888 77788899999932 2333322 35567789999999986666666777
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcEEEEEcCC
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANP 544 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~ 544 (790)
|.+||..+ ++.......+
T Consensus 68 i~~~d~~~--------------------------------------------------------------~~~~~~~~~~ 85 (333)
T 2dg1_A 68 IFKINPET--------------------------------------------------------------KEIKRPFVSH 85 (333)
T ss_dssp EEEECTTT--------------------------------------------------------------CCEEEEEECS
T ss_pred EEEEeCCC--------------------------------------------------------------CcEEEEeeCC
Confidence 77776543 2222211124
Q ss_pred CCCeEEEEEcCCC-eEEEEeCC----CcEEEEeCCCCceEEEEc--CCCCCEEEEEEeCCCCEEEEEeC------CCcEE
Q 003871 545 PPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGA------DAQLC 611 (790)
Q Consensus 545 ~~~v~~l~~s~~g-~l~sgs~d----g~I~iwd~~~~~~~~~l~--~h~~~v~~l~~spdg~~l~s~s~------dg~I~ 611 (790)
...+.+++++|+| +++++..+ +.|.+||..++.....+. .+...+.+++++|+|+++++... .+.|.
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~ 165 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY 165 (333)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEE
Confidence 4668999999999 77666665 689999998776543443 24457999999999988877654 35566
Q ss_pred EEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEECCC-Cceeeee------cCCCCCCC
Q 003871 612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT-LNHTSQL------VPDKMDLP 682 (790)
Q Consensus 612 vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~~-~~~~~~~------~~~~h~~~ 682 (790)
.+|..+++... +.... ..+..++|+|+++.++++ .++.|++||+.+ +..+..+ .... ...
T Consensus 166 ~~~~~~~~~~~------~~~~~----~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~ 234 (333)
T 2dg1_A 166 YVSPDFRTVTP------IIQNI----SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEG 234 (333)
T ss_dssp EECTTSCCEEE------EEEEE----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSE
T ss_pred EEeCCCCEEEE------eecCC----CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCC
Confidence 66665533211 11111 357889999999877664 578899999963 3332211 1111 246
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC
Q 003871 683 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 754 (790)
Q Consensus 683 v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D 754 (790)
+..++++++|+++++...++.|.+||. +++.+..+..... ..|| ...+. +++|+| |+..|+.++.+
T Consensus 235 ~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-~~g~-~~~~~--~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 235 PDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-DEGH-MLRST--HPQFIP-GTNQLIICSND 300 (333)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-GGTC-SCBCC--EEEECT-TSCEEEEEEEC
T ss_pred CCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-cccc-ccCcc--eEEECC-CCCEEEEEeCc
Confidence 788999999998888878899999998 4666555542100 0011 11344 899999 77777655554
No 177
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=7.8e-14 Score=143.25 Aligned_cols=251 Identities=9% Similarity=0.011 Sum_probs=189.9
Q ss_pred CcEEEEec-CCeEEEEECCCCcEEEEEcCCC-CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCC-CCCEEE
Q 003871 516 GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITC 591 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h-~~~v~~ 591 (790)
+++|++++ ++.|.+||.++|+.+.++..+. ..+.++.++|+| .++ +.++.|+.||. +|+.+..+..+ ...+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 56788888 8999999999999999998765 468899999999 766 45788999998 89998888764 357889
Q ss_pred EEEeCCCCEEEEEeC-CCcEEEEECCCCceeeceeeeee-ccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCC
Q 003871 592 LAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL 668 (790)
Q Consensus 592 l~~spdg~~l~s~s~-dg~I~vwd~~~~~~~~~~~l~~~-~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~ 668 (790)
+.+.|||+++++.+. ++.|..+|. +|+.+....+..- ...| .....+++.++|.++++. .++.|..||.. |
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~----~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPH----AQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGG----GSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccc----ccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 999999999999887 778888886 4554433332211 1111 245567889999999986 78999999998 9
Q ss_pred ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEE
Q 003871 669 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 748 (790)
Q Consensus 669 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l 748 (790)
+.+.++.. ...+.++.+.++|+.+++++.++.|..+|..+|+.+..+..... .+. .-.++.+++..+ +|+++
T Consensus 156 ~~~w~~~~---~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~--~~~--~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 156 QLLNSVKL---SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI--EGV--QLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp CEEEEEEC---SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS--BSC--CCSEEEEEEECT-TSCEE
T ss_pred CEEEEEEC---CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC--CCc--cccccccceEcC-CCCEE
Confidence 99888864 24566788899999999999899999999999999888753210 011 122345888888 89888
Q ss_pred EEEeC--C------CcEEEEec-CCCccccccCCCCCCCCccCC
Q 003871 749 ALGLT--N------GRVHVIEP-LESEVEWGKLPFTDSREFSTT 783 (790)
Q Consensus 749 as~s~--D------g~i~iW~~-~~~~~~w~~~~~~~~~~~s~~ 783 (790)
++... . +..+++++ .+|+..|......+-|.+|+.
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 88742 1 23456666 578888998887777777764
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.63 E-value=1.4e-13 Score=145.74 Aligned_cols=261 Identities=11% Similarity=0.004 Sum_probs=178.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc---cccccccccccCCCceeeeecccCCCCCCeEEEEec--
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE---ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-- 515 (790)
-+.+.+++++|+|+.+++...++.+.+++.......... ........+|+..++.+..... .++-..+..++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-KNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-TTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-CCccCCceEEEECCC
Confidence 467999999999998888777765444333322110000 0011123456666666554321 2345678899999
Q ss_pred CcEEEEec-CCeEEEEECCCCc-EEEEEc---------CCCCCeEEEEEcC-CC-eEEEEe-CCCcEEEEeCCCCceEEE
Q 003871 516 GSHLFSAS-GGKISIFSLETFQ-TLATFA---------NPPPIATYFILLP-QD-LFAFGF-DDSSILVHCPCTKKTKAK 581 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~-~~~~~~---------~~~~~v~~l~~s~-~g-~l~sgs-~dg~I~iwd~~~~~~~~~ 581 (790)
|+++++.. ++.|++|+..... .+..+. .+......++++| ++ .+++.+ .++.|++|| .+|+.+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 77766666 7999999986442 455552 3344678999999 67 666665 689999999 56777776
Q ss_pred EcC----------CCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCC
Q 003871 582 LKG----------HQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 650 (790)
Q Consensus 582 l~~----------h~~~v~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~ 650 (790)
+.. +-.....++++|+ ++++++...++.|++||..+++.... +. . ..+. ..+.+++|+| +.
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~--~~-~-~~~~---~~~~~~~~~p-g~ 252 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE--IK-H-ASFG---RNVFAISYIP-GF 252 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE--EC-C-TTTT---TCEEEEEEET-TE
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE--Ee-c-cccC---CCcceeeecC-CE
Confidence 642 2234899999998 77777878899999999987654321 11 1 1222 4688999999 43
Q ss_pred EEEE-E-------eCCcEEEEECCCCceeeeecC-CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 651 HLLS-I-------HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 651 ~l~~-~-------~dg~I~iwd~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
.+++ + .+..|++||..+++.+..+.. ..+...+..++++|+|.++++...++.|++|++..
T Consensus 253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 253 LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 3333 2 234799999999999888742 13467799999999998888888899999999764
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.62 E-value=9.5e-14 Score=146.83 Aligned_cols=240 Identities=10% Similarity=0.048 Sum_probs=173.1
Q ss_pred CCeEEEEec-CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEc
Q 003871 507 DSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 583 (790)
Q Consensus 507 ~~V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~ 583 (790)
.....+++. +...++.. ++.|.+||..+++.+.++.. ......+++++++ .+++...++.|.+||..+++....+.
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 446778888 55555555 79999999999999888853 4567899999999 55555478999999999998877765
Q ss_pred CCC-----CCEEEEEEeCCCCEEEEEe--CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-
Q 003871 584 GHQ-----NRITCLAYSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI- 655 (790)
Q Consensus 584 ~h~-----~~v~~l~~spdg~~l~s~s--~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~- 655 (790)
... .....+++ .+ ..+.+++ .++.|.++|..+++... .+..+ .....++++|+|++++++
T Consensus 123 ~g~~~~~~~~p~~i~~-~~-~~lyv~~~~~~~~v~viD~~t~~~~~-----~i~~g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-YG-KYVYVNCWSYQNRILKIDTETDKVVD-----ELTIG-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp CTTCCTTTCBCCCEEE-ET-TEEEEEECTTCCEEEEEETTTTEEEE-----EEECS-----SCBCCCEECTTSEEEEEBC
T ss_pred cCCccccCCCcceEEE-EC-CEEEEEcCCCCCEEEEEECCCCeEEE-----EEEcC-----CCccceEEcCCCCEEEEEC
Confidence 432 14556777 34 4554444 48899999999865432 23222 245678999999877774
Q ss_pred eC----------CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccC
Q 003871 656 HE----------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 725 (790)
Q Consensus 656 ~d----------g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~ 725 (790)
.+ +.|.++|..+++....+.... ......++|+|++++|+++.. .|++||..+++.... .+.+
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~----~~~~ 263 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR----PFLE 263 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS----CSBC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee----eeec
Confidence 33 689999999998877765321 347899999999999988754 999999998875321 1111
Q ss_pred CCCcccccceEEEEEecCCCCEEEEE----eCCCcEEEEecCCCcccccc
Q 003871 726 PGTISLELYPLVIAAHPLEPNRIALG----LTNGRVHVIEPLESEVEWGK 771 (790)
Q Consensus 726 ~gh~~~~v~~~~v~~sp~d~~~las~----s~Dg~i~iW~~~~~~~~w~~ 771 (790)
.+ ... +.+++++|+++.+.++. ..++.|.+|++. ++..+..
T Consensus 264 ~~--~~~--p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 264 FR--DTK--YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp CC--SSC--EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred CC--CCc--eEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 11 123 44899999666777776 678999999998 7766544
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.62 E-value=6.5e-13 Score=149.83 Aligned_cols=326 Identities=14% Similarity=0.092 Sum_probs=211.1
Q ss_pred CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeee
Q 003871 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLK 420 (790)
Q Consensus 341 ~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd 420 (790)
..+++|. ++|..+++.+ .++.... .+ ..+.|+ |||+++ ++++.|+.|.+||
T Consensus 174 ~~~~~V~--viD~~t~~v~--------~~i~~g~-~p-------~~v~~S-------pDGr~l----yv~~~dg~V~viD 224 (567)
T 1qks_A 174 RDAGQIA--LIDGSTYEIK--------TVLDTGY-AV-------HISRLS-------ASGRYL----FVIGRDGKVNMID 224 (567)
T ss_dssp TTTTEEE--EEETTTCCEE--------EEEECSS-CE-------EEEEEC-------TTSCEE----EEEETTSEEEEEE
T ss_pred CCCCeEE--EEECCCCeEE--------EEEeCCC-Cc-------cceEEC-------CCCCEE----EEEcCCCeEEEEE
Confidence 5678888 9999999876 4444332 23 678898 999999 8888999999999
Q ss_pred ccccCCCCceeeeeccCCCCCCceEEEEEc----CCCCEEEEEeC-CCcEEEEecCCCCccccccccccccccccCCCce
Q 003871 421 LQLINEPSECRTLLLPDNSFGGRVVRLIYS----HSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL 495 (790)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~h~~~V~~l~~s----pdg~~l~s~~~-dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~ 495 (790)
+... ......++.. ......++|+ |||+++++++. ++++.++|..+.+.. .....+.
T Consensus 225 ~~~~-t~~~v~~i~~-----G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~------------~~i~~~~ 286 (567)
T 1qks_A 225 LWMK-EPTTVAEIKI-----GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK------------KIQSTRG 286 (567)
T ss_dssp TTSS-SCCEEEEEEC-----CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE------------EEEECCE
T ss_pred CCCC-CCcEeEEEec-----CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE------------EEEeccc
Confidence 9410 0233344332 3456899999 69999998887 689999997664430 0000000
Q ss_pred eeeecccCCC-CCCeEEEEec--CcE-EEEec-CCeEEEEECCCCcEEEEEc-CCCCCeEEEEEcCCC-eEEEE-eCCCc
Q 003871 496 VMTNDIAADP-KDSISCFALR--GSH-LFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFG-FDDSS 567 (790)
Q Consensus 496 ~~~~~~~~~~-~~~V~~l~~s--~~~-l~s~s-dg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~g-~l~sg-s~dg~ 567 (790)
. .......| ...+..+..+ +.. ++... +|.|.++|..+.+...... ........+.|+|+| +++++ ..++.
T Consensus 287 ~-~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~ 365 (567)
T 1qks_A 287 M-TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 365 (567)
T ss_dssp E-CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred c-ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCe
Confidence 0 00000001 2256677777 344 44444 6999999998754332221 234456788999999 65554 46789
Q ss_pred EEEEeCCCCceEEEEcC-----CCCCEEEEEEeCCCCE-EEEEe-CCCcEEEEECCCCce--eeceeeeeeccCCCCCCC
Q 003871 568 ILVHCPCTKKTKAKLKG-----HQNRITCLAYSLSLNV-LVSSG-ADAQLCVWDAVGWKK--LCSKFLHSFQTGLVPETT 638 (790)
Q Consensus 568 I~iwd~~~~~~~~~l~~-----h~~~v~~l~~spdg~~-l~s~s-~dg~I~vwd~~~~~~--~~~~~l~~~~~~~~~~~~ 638 (790)
|.++|..+++.+..+.. |.+.-..+ ++|++.. .+++. .+++|.++|..+++. ...+.++++.... .
T Consensus 366 V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g----~ 440 (567)
T 1qks_A 366 LVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG----G 440 (567)
T ss_dssp EEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC----S
T ss_pred EEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC----C
Confidence 99999999987766643 43322222 6887544 44543 468999999987321 0112334333221 1
Q ss_pred CeEEEEEeCCCCEEEEEe--------CCcEEEEECCCC-----c-eeeeecC------CCCCCCeEEEEEecCCCEEEEE
Q 003871 639 IVNHIQFHPDQIHLLSIH--------EGQIDVYEAPTL-----N-HTSQLVP------DKMDLPITYATYSCDGKCIYVS 698 (790)
Q Consensus 639 ~v~~i~~sp~~~~l~~~~--------dg~I~iwd~~~~-----~-~~~~~~~------~~h~~~v~~l~~s~dg~~l~sg 698 (790)
.-..+..+|+++++.+.. .++|.++|+.+. . ....+.. ......+..+.|+|+|+++..+
T Consensus 441 g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s 520 (567)
T 1qks_A 441 GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFS 520 (567)
T ss_dssp CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEE
T ss_pred CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEE
Confidence 234577899999999853 358999999876 2 1122210 1124678999999999988876
Q ss_pred Ec-----CCeEEEEECCCCeEEEEec
Q 003871 699 CK-----SGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 699 s~-----dg~i~vwd~~~~~~~~~~~ 719 (790)
.. ++.|.|+|..+++++.++.
T Consensus 521 ~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 521 VWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp EECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred eecCCCCCCcEEEEECCCceEEEEeC
Confidence 43 7999999999999988876
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.60 E-value=1.8e-11 Score=126.92 Aligned_cols=277 Identities=9% Similarity=0.027 Sum_probs=189.0
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--Cc
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 517 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~ 517 (790)
+...+.+++++++|+..++...++.|.+|+.. +.. ..... ......+.+++++ |.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~---------------------~~~~~-~~~~~~~~~i~~~~~g~ 69 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI---------------------TEYPL-PTPDAKVMCLTISSDGE 69 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE---------------------EEEEC-SSTTCCEEEEEECTTSC
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe---------------------EEecC-CcccCceeeEEECCCCC
Confidence 45789999999999966665557889988865 221 11111 1234678899998 66
Q ss_pred EEEEec-CCeEEEEECCCCcEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEE-EcCCCCCEEEE
Q 003871 518 HLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCL 592 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~~~~~~~~~~--~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~-l~~h~~~v~~l 592 (790)
+.++.. ++.|..|+.. ++. ..+. .....+..+++.++| .+++...++.|..||. +++.... ...+...+.++
T Consensus 70 l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 70 VWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred EEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 666665 7899999986 443 3332 245578899999999 6666667889999998 5554432 23345678999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCcee
Q 003871 593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT 671 (790)
Q Consensus 593 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~ 671 (790)
+++++|+..++...++.|..||. +++... +. .... . ..+.+++++++|.+.++. .++.|.+||. +++..
T Consensus 147 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~-~~~~-~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 216 (299)
T 2z2n_A 147 TLGSDNALWFTENQNNAIGRITE-SGDITE---FK-IPTP-A---SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT 216 (299)
T ss_dssp EECTTSCEEEEETTTTEEEEECT-TCCEEE---EE-CSST-T---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred EEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---ee-CCCC-C---CcceeEEECCCCCEEEEccCCceEEEECC-CCcEE
Confidence 99999988887777889999998 544221 11 1211 1 468899999999876665 5788999999 66643
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEE
Q 003871 672 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 672 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~ 751 (790)
. +....+...+.+++++++|+..++...++.|..||. +++.. .+... ++ ...+. ++++ + ++.+.++.
T Consensus 217 ~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~-----~~-~~~~~--~i~~-~-~g~l~v~~ 283 (299)
T 2z2n_A 217 E-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPIQ-----IK-SAEPH--GICF-D-GETIWFAM 283 (299)
T ss_dssp E-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEECS-----SS-SCCEE--EEEE-C-SSCEEEEE
T ss_pred E-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeCC-----CC-CCccc--eEEe-c-CCCEEEEe
Confidence 3 322223567999999999997666667899999998 45433 32211 11 22344 8888 7 78877766
Q ss_pred eCCCcEEEEecCCCc
Q 003871 752 LTNGRVHVIEPLESE 766 (790)
Q Consensus 752 s~Dg~i~iW~~~~~~ 766 (790)
+ .+.+..+++.+++
T Consensus 284 ~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 284 E-CDKIGKLTLIKDN 297 (299)
T ss_dssp T-TTEEEEEEEC---
T ss_pred c-CCcEEEEEcCccc
Confidence 5 5678888876653
No 182
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.58 E-value=2e-13 Score=146.30 Aligned_cols=225 Identities=9% Similarity=-0.045 Sum_probs=148.2
Q ss_pred CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEe----------CCCcEEEEeCCCCceEEEEcCC------C
Q 003871 524 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKTKAKLKGH------Q 586 (790)
Q Consensus 524 dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs----------~dg~I~iwd~~~~~~~~~l~~h------~ 586 (790)
|+.|.+||..+++.+.++..+..+ .++++||| +++++. .++.|.+||..+++.+..+... .
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g 107 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL 107 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred cCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence 679999999999998888765544 89999999 777775 3568999999999888777532 2
Q ss_pred CCEEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeeceeeeeeccCCC-----CCCCCeEEEEEeCCCCEE-------
Q 003871 587 NRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLV-----PETTIVNHIQFHPDQIHL------- 652 (790)
Q Consensus 587 ~~v~~l~~spdg~~l~s~s~--dg~I~vwd~~~~~~~~~~~l~~~~~~~~-----~~~~~v~~i~~sp~~~~l------- 652 (790)
.....++++|||++|++++. +++|.+||+.+++.... . +..+.. .+.+...-++++++|+.+
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~-~---i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED-V---TAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE-E---GGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE-E---ecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 34667999999999998874 68999999998654322 0 111000 000001112222222222
Q ss_pred -------------------------------EE-EeCCcEEEEECCCCce--eeeecCCC----C----CCCeEEEEEec
Q 003871 653 -------------------------------LS-IHEGQIDVYEAPTLNH--TSQLVPDK----M----DLPITYATYSC 690 (790)
Q Consensus 653 -------------------------------~~-~~dg~I~iwd~~~~~~--~~~~~~~~----h----~~~v~~l~~s~ 690 (790)
+. +.++.|+++|+..... ...+.... + ......++|+|
T Consensus 184 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~ 263 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR 263 (361)
T ss_dssp SSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred CcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence 22 2334455555543221 11111000 0 01111378999
Q ss_pred CCCEEEEEEc-----------CCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEE
Q 003871 691 DGKCIYVSCK-----------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 759 (790)
Q Consensus 691 dg~~l~sgs~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~i 759 (790)
+++.++++.. .+.|.+||+.+++.+..+.. + . .+ +++|+| ||++|++++. ++|.+
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~-------~-~--p~--~ia~sp-dg~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG-------R-D--AL--SMTIDQ-QRNLMLTLDG-GNVNV 329 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC-------T-T--CC--EEEEET-TTTEEEEECS-SCEEE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec-------C-C--ee--EEEECC-CCCEEEEeCC-CeEEE
Confidence 9888877654 35899999999999888763 2 2 55 999999 8999998886 99999
Q ss_pred EecCCC--ccc
Q 003871 760 IEPLES--EVE 768 (790)
Q Consensus 760 W~~~~~--~~~ 768 (790)
||..++ +..
T Consensus 330 ~D~~t~~l~~~ 340 (361)
T 2oiz_A 330 YDISQPEPKLL 340 (361)
T ss_dssp EECSSSSCEEE
T ss_pred EECCCCcceee
Confidence 999998 644
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.58 E-value=4.3e-13 Score=142.81 Aligned_cols=254 Identities=9% Similarity=0.032 Sum_probs=169.9
Q ss_pred CCceEEEEEcCCCCEEEEEeC---------CCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEE
Q 003871 441 GGRVVRLIYSHSGDFLVALTQ---------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC 511 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~---------dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~ 511 (790)
...+...++ ||++++.... ++.|.+|++.++. .... ..+..
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~---------------------~~~l-------~~~~~ 63 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA---------------------RRFI-------ENATM 63 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC---------------------EEEE-------ESCEE
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc---------------------eEEc-------ccCCC
Confidence 345677778 8998877532 4567777665432 2211 45778
Q ss_pred EEec--CcEEEEec-C---C--eEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC-----------------
Q 003871 512 FALR--GSHLFSAS-G---G--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD----------------- 565 (790)
Q Consensus 512 l~~s--~~~l~s~s-d---g--~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~d----------------- 565 (790)
++|+ |++|+.++ + + .|.+|++.+++.......+ . +..++|+||| .|+.++.+
T Consensus 64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence 8999 88888776 2 3 3888888887765554433 3 8999999999 77776532
Q ss_pred ----------CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC-------cEEEEECCCCceeeceeeee
Q 003871 566 ----------SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-------QLCVWDAVGWKKLCSKFLHS 628 (790)
Q Consensus 566 ----------g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg-------~I~vwd~~~~~~~~~~~l~~ 628 (790)
..|++||+.+++.+..+.. . .+..++|+||| ++++++.++ ...+|.+.+++. ..+.
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~---~~l~- 214 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE---EKMF- 214 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE---EEEE-
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce---EEec-
Confidence 5799999998877455554 3 78899999999 777776542 334444434331 1121
Q ss_pred eccCCCCCCCCeEEEEEeCCCCEEEE-EeC--------CcEEEEECCCCceeeeecCCCCCCCeEE-EEEecCCCEEEEE
Q 003871 629 FQTGLVPETTIVNHIQFHPDQIHLLS-IHE--------GQIDVYEAPTLNHTSQLVPDKMDLPITY-ATYSCDGKCIYVS 698 (790)
Q Consensus 629 ~~~~~~~~~~~v~~i~~sp~~~~l~~-~~d--------g~I~iwd~~~~~~~~~~~~~~h~~~v~~-l~~s~dg~~l~sg 698 (790)
.+ . .+..+ +|+|++|+. +.+ ..|++|| +++.. .+.. .+...+.. +.|+ || +++++
T Consensus 215 --~~-~----~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~-~~~~~~~~~~~~s-dg-~~~~~ 279 (347)
T 2gop_A 215 --EK-V----SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GILD-EVDRGVGQAKIKD-GK-VYFTL 279 (347)
T ss_dssp --EE-E----SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESST-TCCSEEEEEEEET-TE-EEEEE
T ss_pred --cC-c----ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-eccc-cCCcccCCccEEc-Cc-EEEEE
Confidence 11 1 34444 999998887 432 3688888 55543 3332 34667886 9999 88 88999
Q ss_pred EcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcE-EEEecC
Q 003871 699 CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV-HVIEPL 763 (790)
Q Consensus 699 s~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i-~iW~~~ 763 (790)
+.++.+++| +.+++....+. + ...+. +++|+| .++++++.++.. .||.+.
T Consensus 280 ~~~~~~~l~-~~~g~~~~~~~--------~-~~~v~--~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 280 FEEGSVNLY-IWDGEIKPIAK--------G-RHWIM--GFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EETTEEEEE-EESSSEEEEEC--------S-SSEEE--EEEESS---SEEEEEECSSSCCEEEEES
T ss_pred ecCCcEEEE-EcCCceEEEec--------C-CCeEE--eeeeeC---cEEEEEcCCCChHHheEeC
Confidence 999999999 88776544332 1 33455 889988 577777777765 777775
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=9.1e-13 Score=154.91 Aligned_cols=242 Identities=9% Similarity=-0.009 Sum_probs=167.5
Q ss_pred CCCCCeEEEEec--CcEEEEec--CC----eEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCc-------
Q 003871 504 DPKDSISCFALR--GSHLFSAS--GG----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSS------- 567 (790)
Q Consensus 504 ~~~~~V~~l~~s--~~~l~s~s--dg----~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~------- 567 (790)
++...+..++|+ |++|+.+. +| .|++||+.+++.......+ ..+..++|+||| .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 344568899999 88888766 23 8999999999876533222 225679999999 8888887765
Q ss_pred ---------EEEEeCCCCce--EEEEc--CCCCCEEEEEEeCCCCEEEEEeC-----CCcEEEEECCC------Cceeec
Q 003871 568 ---------ILVHCPCTKKT--KAKLK--GHQNRITCLAYSLSLNVLVSSGA-----DAQLCVWDAVG------WKKLCS 623 (790)
Q Consensus 568 ---------I~iwd~~~~~~--~~~l~--~h~~~v~~l~~spdg~~l~s~s~-----dg~I~vwd~~~------~~~~~~ 623 (790)
|++|++.+++. ...+. .|...+..+.|+|||++|+.++. +..|++||+.+ +..
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--- 277 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL--- 277 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC---
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc---
Confidence 99999988752 22233 35566889999999999988765 56899999976 321
Q ss_pred eeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-Ee----CCcEEEEECCCCce--eeeecCCCCCCCeEEEEEecCCCEEE
Q 003871 624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIY 696 (790)
Q Consensus 624 ~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~----dg~I~iwd~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~ 696 (790)
.+..+..+. ..+.. .|+|+|..|+. +. .+.|.+||+.++.. ...+..+.....+..++|++++.+++
T Consensus 278 -~~~~l~~~~----~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 278 -KWVKLIDNF----EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp -CCEEEECSS----SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred -ceEEeeCCC----CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 122122222 23433 58899988887 43 23699999987642 34444422123688899998888888
Q ss_pred EEEcCCe--EEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEE-EEe---CCCcEEEEecCCCc
Q 003871 697 VSCKSGH--VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGL---TNGRVHVIEPLESE 766 (790)
Q Consensus 697 sgs~dg~--i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~la-s~s---~Dg~i~iW~~~~~~ 766 (790)
++..|+. |++|++.+|+.+..+.. + .+.+. .++++| +++.++ +.+ ..++|+.||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~-------~-~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPL-------E-VGSVV--GYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECC-------C-SSEEE--EEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCC-------C-CceEE--EEecCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888884 66778877876666542 2 33344 889999 676555 333 35789999998877
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=1.8e-13 Score=160.35 Aligned_cols=240 Identities=9% Similarity=-0.005 Sum_probs=161.0
Q ss_pred CCCCCeEEEEec--CcEEEEe-----c-CCeEEEEECCCCcEE-EEEcCCCCCeEEEEEcCCC-eEEEEeCCCc------
Q 003871 504 DPKDSISCFALR--GSHLFSA-----S-GGKISIFSLETFQTL-ATFANPPPIATYFILLPQD-LFAFGFDDSS------ 567 (790)
Q Consensus 504 ~~~~~V~~l~~s--~~~l~s~-----s-dg~I~vwd~~~~~~~-~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~------ 567 (790)
+|...+.+++|+ |++|+.+ + +..|++||+.+++.+ .... .......++|+||| .|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 455678899999 8888843 3 368999999998764 2111 11112678999999 8888888766
Q ss_pred -------EEEEeCCCCc----eEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC----cEEEEECCCCceeeceeeeeeccC
Q 003871 568 -------ILVHCPCTKK----TKAKLKGHQNRITCLAYSLSLNVLVSSGADA----QLCVWDAVGWKKLCSKFLHSFQTG 632 (790)
Q Consensus 568 -------I~iwd~~~~~----~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg----~I~vwd~~~~~~~~~~~l~~~~~~ 632 (790)
|++|++.++. .+.....|...+.++.|+|||++|+.++.++ .|++||..+++. .. +...
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~---~~---l~~~ 270 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF---RL---LVKG 270 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC---EE---EEEC
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce---EE---eecC
Confidence 9999998876 2333334666889999999999998877666 677776655331 12 2222
Q ss_pred CCCCCCCeEEEEEeCCCCEEEE-Ee----CCcEEEEECCCCce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEE
Q 003871 633 LVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 705 (790)
Q Consensus 633 ~~~~~~~v~~i~~sp~~~~l~~-~~----dg~I~iwd~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~ 705 (790)
. ..+....+ |+|. ++. +. ++.|.+||+.++.. ...+..+.....+..++|+ ++.++++...|+..+
T Consensus 271 ~----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 271 V----GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp S----SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred C----CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 2 24555556 5666 554 42 47799999987653 2344332224567888998 778888999999888
Q ss_pred EEECC-CCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEE----eCCCcEEEEecCCCcc
Q 003871 706 VFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG----LTNGRVHVIEPLESEV 767 (790)
Q Consensus 706 vwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~----s~Dg~i~iW~~~~~~~ 767 (790)
+|.+. +|+....+.. +..+.+. .++++| +++.++.. ...++|++||+.+++.
T Consensus 344 l~~~~~~g~~~~~l~~-------~~~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQL-------PGVGAAS--NLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEETTCCEEEECCC-------SSSSEEC--CCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEeCCCCeeEEecC-------CCCeEEE--EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 87655 3554444431 2133444 788899 77766622 2347899999988763
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.54 E-value=2.9e-12 Score=133.22 Aligned_cols=230 Identities=11% Similarity=-0.044 Sum_probs=162.1
Q ss_pred CCCCeEEEEec--Cc-EEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE
Q 003871 505 PKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 579 (790)
Q Consensus 505 ~~~~V~~l~~s--~~-~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~ 579 (790)
+.....+++|+ ++ +++++. ++.|..|+..++ ...+..+...+.+++++|+| ++++...++.|.+||..+++..
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 45667899999 66 566666 899999999877 66677677789999999999 7776666789999999888754
Q ss_pred EEEcCC----CCCEEEEEEeCCCCEEEEEeC-----------------CCcEEEEECCCCceeeceeeeeeccCCCCCCC
Q 003871 580 AKLKGH----QNRITCLAYSLSLNVLVSSGA-----------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 638 (790)
Q Consensus 580 ~~l~~h----~~~v~~l~~spdg~~l~s~s~-----------------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~ 638 (790)
...... ...+++++++|+|+++++.+. .+.|..+|.. ++. ..+.. +. .
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~------~~~~~-~~---~ 172 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL------SAPIR-DR---V 172 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE------EEEEC-CC---S
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE------EEeec-CC---C
Confidence 433221 234678999999998887321 2355555554 321 11112 22 3
Q ss_pred CeEEEEEeCCCCEEEEE-eCCcEEEEECC-CCce---eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003871 639 IVNHIQFHPDQIHLLSI-HEGQIDVYEAP-TLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 639 ~v~~i~~sp~~~~l~~~-~dg~I~iwd~~-~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~ 713 (790)
....++|+|+++.+++. .++.|++||+. +++. ...+ . .+...+..++++++|+++++. ++.|.+||.. ++
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~-~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~ 247 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T-VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD 247 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C-CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e-CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence 67899999999998554 57889999986 5554 3344 2 245667889999999976665 8899999987 66
Q ss_pred EEEEeccccccCCCCcccccceEEEEE-ecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 714 LRCQINLTAYAQPGTISLELYPLVIAA-HPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 714 ~~~~~~~~~~~~~gh~~~~v~~~~v~~-sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
.+..+.. + .. +. +++| +| +++.|+.++.+ .+.-+++.+.
T Consensus 248 ~~~~~~~-------~-~~-~~--~~~f~~~-d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 248 ELGRVLT-------P-QT-TS--NLCFGGP-EGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp EEEEEEC-------S-SC-CC--EEEEEST-TSCEEEEEETT-EEEEEECSCC
T ss_pred EEEEEEC-------C-CC-ce--eEEEECC-CCCEEEEEcCC-eEEEEEcccc
Confidence 6666542 1 22 55 8889 47 88888888876 3444455444
No 187
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=5.8e-12 Score=133.06 Aligned_cols=267 Identities=12% Similarity=0.036 Sum_probs=179.7
Q ss_pred CCCceEeeeccccCCCCceeeeec---cCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccccccccccc
Q 003871 412 SLEKSVNLKLQLINEPSECRTLLL---PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQL 488 (790)
Q Consensus 412 ~d~~i~iwd~~~~~~~~~~~~~~l---~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i 488 (790)
.+++|.++|.. +++...... ...........+++. +++..++...++.|.+||..++..
T Consensus 15 ~~~~l~~~d~~----t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~------------- 76 (328)
T 3dsm_A 15 SNATLSYYDPA----TCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE------------- 76 (328)
T ss_dssp CCBEEEEEETT----TTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-------------
T ss_pred CCceEEEEECC----CCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-------------
Confidence 47899999997 344332110 011123456778774 344444444578999998776433
Q ss_pred ccCCCceeeeecccCCCCCCeEEEEec-CcEEEEec--CCeEEEEECCCCcEEEEEcCCC-----CCeEEEEEcCCCeEE
Q 003871 489 YQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS--GGKISIFSLETFQTLATFANPP-----PIATYFILLPQDLFA 560 (790)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~-----~~v~~l~~s~~g~l~ 560 (790)
+... .....+..++++ +..++++. ++.|.+||..+++....+.... .....+++ .++.++
T Consensus 77 --------~~~i---~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~ly 144 (328)
T 3dsm_A 77 --------VGRI---TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVY 144 (328)
T ss_dssp --------EEEE---ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEE
T ss_pred --------EEEc---CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEE
Confidence 2211 134667889996 33554444 8999999999998887776333 13456777 344444
Q ss_pred EEe--CCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCC----------CcEEEEECCCCceeeceeeee
Q 003871 561 FGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD----------AQLCVWDAVGWKKLCSKFLHS 628 (790)
Q Consensus 561 sgs--~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d----------g~I~vwd~~~~~~~~~~~l~~ 628 (790)
++. .++.|.++|..+++.+..+... .....++++|+|++++++..+ +.|.++|..+++.... +.
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~--~~- 220 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ--FK- 220 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE--EE-
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE--Ee-
Confidence 444 4889999999999888777643 345688999999877776654 7899999998654321 21
Q ss_pred eccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEec-CCCEEEEE----EcCCe
Q 003871 629 FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVS----CKSGH 703 (790)
Q Consensus 629 ~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sg----s~dg~ 703 (790)
++.+ .....++|+|+++.++++.. .|.+||..+++................++++| +++..++. ..++.
T Consensus 221 ~~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~ 294 (328)
T 3dsm_A 221 FKLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGI 294 (328)
T ss_dssp CCTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEE
T ss_pred cCCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCE
Confidence 2222 35789999999999988644 99999998887642211111246789999999 45555555 56899
Q ss_pred EEEEECCCCeEEEEec
Q 003871 704 VKVFDTSTLELRCQIN 719 (790)
Q Consensus 704 i~vwd~~~~~~~~~~~ 719 (790)
|.+||.. |+.+..+.
T Consensus 295 V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 295 VYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEEECTT-CCEEEEEE
T ss_pred EEEECCC-CCEEEEEE
Confidence 9999998 88888775
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.54 E-value=1.3e-12 Score=139.14 Aligned_cols=236 Identities=12% Similarity=0.063 Sum_probs=155.4
Q ss_pred CCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCC---Cc--EEEEecCCCCccccccccccccc
Q 003871 413 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---AT--HKLWKWQSNKQSLEEENVNMESQ 487 (790)
Q Consensus 413 d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~d---g~--i~vw~~~~~~~~~g~~~~~~~~~ 487 (790)
++.|.+||+.. +....+ ..+..++|||||++|+.++.+ +. |.+|++.+
T Consensus 42 ~~~l~~~d~~~----~~~~~l--------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~--------------- 94 (347)
T 2gop_A 42 ENTIVIENLKN----NARRFI--------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET--------------- 94 (347)
T ss_dssp EEEEEEEETTT----CCEEEE--------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT---------------
T ss_pred cceEEEEeCCC----CceEEc--------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC---------------
Confidence 56788999863 444432 357889999999999988764 34 55555443
Q ss_pred cccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-C---------------------------CeEEEEECCCCcE
Q 003871 488 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G---------------------------GKISIFSLETFQT 537 (790)
Q Consensus 488 i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-d---------------------------g~I~vwd~~~~~~ 537 (790)
+....... +.. +..++|+ |+.|+.++ + ..|.+||+.+++.
T Consensus 95 ------g~~~~l~~---~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 95 ------LSSKKILE---AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV 164 (347)
T ss_dssp ------TEEEEEEE---ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred ------CceEEEEc---CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence 32222211 223 8899998 77777765 3 4699999998877
Q ss_pred EEEEcCCCCCeEEEEEcCCCeEEEEeCC---------CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCC-
Q 003871 538 LATFANPPPIATYFILLPQDLFAFGFDD---------SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD- 607 (790)
Q Consensus 538 ~~~~~~~~~~v~~l~~s~~g~l~sgs~d---------g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d- 607 (790)
+..+.. . .+..++|+|+|.++++..+ ..|+++| +++. ..+..+ ..+..+ +|||++|+.++.+
T Consensus 165 ~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~ 236 (347)
T 2gop_A 165 IEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFYAV--DSDGERILLYGKPE 236 (347)
T ss_dssp EEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEEEE--EECSSCEEEEECCS
T ss_pred EeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--CCce-EEeccC-cceeeE--CCCCCEEEEEEccc
Confidence 455554 3 7889999999933344433 1455555 5544 344434 555554 9999999887754
Q ss_pred -------CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEE-EEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCC
Q 003871 608 -------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH-IQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK 678 (790)
Q Consensus 608 -------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~-i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~ 678 (790)
..|.+|| +++ ... +..++. ..+.. +.|+ ++ +++++ .++.+++| +.+++..... .
T Consensus 237 ~~~~~~~~~l~~~d--~~~-----~~~-l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~-- 299 (347)
T 2gop_A 237 KKYMSEHNKLYIYD--GKE-----VMG-ILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-K-- 299 (347)
T ss_dssp SSCCCSSCEEEEEC--SSC-----EEE-SSTTCC---SEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-C--
T ss_pred cCCccccceEEEEC--CCc-----eEe-ccccCC---cccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-c--
Confidence 3688888 432 111 333443 46776 8999 88 66664 78899999 8766654333 2
Q ss_pred CCCCeEEEEEecCCCEEEEEEcCCeE-EEEECCCCe
Q 003871 679 MDLPITYATYSCDGKCIYVSCKSGHV-KVFDTSTLE 713 (790)
Q Consensus 679 h~~~v~~l~~s~dg~~l~sgs~dg~i-~vwd~~~~~ 713 (790)
+...|.+++|+| .++++++.++.. .+|.+. ++
T Consensus 300 ~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 300 GRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp SSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 367799999999 677777777654 677666 55
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.53 E-value=4.4e-11 Score=123.94 Aligned_cols=273 Identities=7% Similarity=-0.025 Sum_probs=187.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
.++++. ++|+.. ++...++.|..||.. +....+.++ .+...+.+++++++|+..++...++.
T Consensus 18 ~~i~~d-------~~g~l~----v~~~~~~~v~~~d~~-----~~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~~~~ 79 (299)
T 2z2n_A 18 YGITVS-------DKGKVW----ITQHKANMISCINLD-----GKITEYPLP--TPDAKVMCLTISSDGEVWFTENAANK 79 (299)
T ss_dssp EEEEEC-------TTSCEE----EEETTTTEEEEECTT-----CCEEEEECS--STTCCEEEEEECTTSCEEEEETTTTE
T ss_pred cceEEC-------CCCCEE----EEecCCCcEEEEcCC-----CCeEEecCC--cccCceeeEEECCCCCEEEeCCCCCe
Confidence 788887 889877 777768899999985 334433332 24577999999999997776666788
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEE
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 541 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~ 541 (790)
|..|+... . ...... ......+.++++. +.++++.. ++.|..||. +++.....
T Consensus 80 i~~~~~~g-~---------------------~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~ 135 (299)
T 2z2n_A 80 IGRITKKG-I---------------------IKEYTL-PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYE 135 (299)
T ss_dssp EEEECTTS-C---------------------EEEEEC-SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred EEEECCCC-c---------------------EEEEeC-CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEec
Confidence 98887542 1 111111 1234568889998 66666555 789999998 55544322
Q ss_pred -cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEE-EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 003871 542 -ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (790)
Q Consensus 542 -~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~-l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 618 (790)
......+..+++.++| ..++...++.|..||. +++.... +..+...+.+++++++|++.++...++.|.+||. ++
T Consensus 136 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g 213 (299)
T 2z2n_A 136 LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SG 213 (299)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CC
Confidence 2344568999999999 6666666789999998 6665432 3334557889999999998777767889999999 54
Q ss_pred ceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEE
Q 003871 619 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 697 (790)
Q Consensus 619 ~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 697 (790)
+.. .+. ... .. ..+.+++++++|+..++. .++.|..||. +++ +..+....+...+.++++ ++|++.++
T Consensus 214 ~~~---~~~-~~~-~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~ 282 (299)
T 2z2n_A 214 EIT---EFK-IPT-PN---ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFA 282 (299)
T ss_dssp CEE---EEE-CSS-TT---CCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEE
T ss_pred cEE---EEE-CCC-CC---CCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEE
Confidence 422 111 221 22 478899999999866665 6788999998 454 334432233567899999 88887666
Q ss_pred EEcCCeEEEEECCCCe
Q 003871 698 SCKSGHVKVFDTSTLE 713 (790)
Q Consensus 698 gs~dg~i~vwd~~~~~ 713 (790)
.+ .+.+..++..+++
T Consensus 283 ~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 283 ME-CDKIGKLTLIKDN 297 (299)
T ss_dssp ET-TTEEEEEEEC---
T ss_pred ec-CCcEEEEEcCccc
Confidence 54 6778888877654
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.53 E-value=2.6e-12 Score=151.05 Aligned_cols=243 Identities=12% Similarity=0.027 Sum_probs=166.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCC-----cEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEE
Q 003871 439 SFGGRVVRLIYSHSGDFLVALTQTA-----THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 513 (790)
Q Consensus 439 ~h~~~V~~l~~spdg~~l~s~~~dg-----~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~ 513 (790)
+|...+..++|||||++|+.+..++ .|++||+.++.. ..... ....+.+++
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~---------------------~~~~~---~~~~~~~~~ 177 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE---------------------LPDVL---ERVKFSCMA 177 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE---------------------EEEEE---EEECSCCEE
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC---------------------Ccccc---cCcccceEE
Confidence 3555789999999999999877643 788888776433 21111 112256789
Q ss_pred ec--CcEEEEec-CCe----------------EEEEECCCCcE--EEEEcC--CCCCeEEEEEcCCC-eEEEEeC-----
Q 003871 514 LR--GSHLFSAS-GGK----------------ISIFSLETFQT--LATFAN--PPPIATYFILLPQD-LFAFGFD----- 564 (790)
Q Consensus 514 ~s--~~~l~s~s-dg~----------------I~vwd~~~~~~--~~~~~~--~~~~v~~l~~s~~g-~l~sgs~----- 564 (790)
|+ |+.|+.++ ++. |++|++.+++. ...+.. +...+..+.|+||| +|+.++.
T Consensus 178 wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 257 (710)
T 2xdw_A 178 WTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP 257 (710)
T ss_dssp ECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSS
T ss_pred EEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCC
Confidence 99 77887776 544 99999988762 233332 44557899999999 7766654
Q ss_pred CCcEEEEeCCC------Cc-eEEEEcCCCCCEEEEEEeCCCCEEEEEeCC----CcEEEEECCCCceeeceeeeeeccCC
Q 003871 565 DSSILVHCPCT------KK-TKAKLKGHQNRITCLAYSLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGL 633 (790)
Q Consensus 565 dg~I~iwd~~~------~~-~~~~l~~h~~~v~~l~~spdg~~l~s~s~d----g~I~vwd~~~~~~~~~~~l~~~~~~~ 633 (790)
+..|++||+.+ +. ....+..+...+.. .|+|+|+.|+..+.+ +.|.+||+.++.... ...+..++
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~---~~~l~~~~ 333 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK---WKVLVPEH 333 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG---CEEEECCC
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc---ceeccCCC
Confidence 56899999986 53 35566666666655 488999988776653 359999998753211 11122222
Q ss_pred CCCCCCeEEEEEeCCCCEEEEE-eCC--cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE----cCCeEEE
Q 003871 634 VPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC----KSGHVKV 706 (790)
Q Consensus 634 ~~~~~~v~~i~~sp~~~~l~~~-~dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs----~dg~i~v 706 (790)
.. ..+..++|++++.++++. .++ .|++||+.+++.+..+.. +...+..++++|+++.++... ..+.|+.
T Consensus 334 ~~--~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~ 409 (710)
T 2xdw_A 334 EK--DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYH 409 (710)
T ss_dssp SS--CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEE
T ss_pred CC--CeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEE
Confidence 10 257789999777766664 666 477888877887777754 366788999999998666433 2478999
Q ss_pred EECCCCe
Q 003871 707 FDTSTLE 713 (790)
Q Consensus 707 wd~~~~~ 713 (790)
||+.+++
T Consensus 410 ~d~~tg~ 416 (710)
T 2xdw_A 410 CDLTKEE 416 (710)
T ss_dssp EETTSSS
T ss_pred EECCCCc
Confidence 9999887
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.51 E-value=1e-11 Score=129.03 Aligned_cols=236 Identities=11% Similarity=0.063 Sum_probs=166.7
Q ss_pred CCCceEEEEEcCCCC-EEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C
Q 003871 440 FGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 440 h~~~V~~l~~spdg~-~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
+.....+++|+|+|+ .++++..++.|..|+..++ . .... .+...+.+++++ |
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~---------------------~~~~---~~~~~~~~l~~~~dg 80 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L---------------------SPEM---HPSHHQNGHCLNKQG 80 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E---------------------EEEE---SSCSSEEEEEECTTC
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e---------------------EEEE---CCCCCcceeeECCCC
Confidence 345678999999999 5666777899999987653 1 1111 255678899998 6
Q ss_pred cEEEEec-CCeEEEEECCCCcEEEEEcCC----CCCeEEEEEcCCC-eEEE----Ee-------------CCCcEEEEeC
Q 003871 517 SHLFSAS-GGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAF----GF-------------DDSSILVHCP 573 (790)
Q Consensus 517 ~~l~s~s-dg~I~vwd~~~~~~~~~~~~~----~~~v~~l~~s~~g-~l~s----gs-------------~dg~I~iwd~ 573 (790)
+++++.. ++.|.+||..+++........ ...+..++++|+| ++++ |+ ..+.|+.++.
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 7666666 689999999888765433211 2345789999999 7666 33 1346777776
Q ss_pred CCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC-CCce-eeceeeeeeccCCCCCCCCeEEEEEeCCCCE
Q 003871 574 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKK-LCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 651 (790)
Q Consensus 574 ~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~-~~~~-~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~ 651 (790)
. ++. ..+..+....+.++|+||++.+++.+.++.|.+||+. ++.. ..... + ..+. ..+..++++++|++
T Consensus 161 ~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~---~-~~~~---~~p~~i~~d~~G~l 231 (296)
T 3e5z_A 161 D-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVH---F-TVEP---GKTDGLRVDAGGLI 231 (296)
T ss_dssp T-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEE---E-CCSS---SCCCSEEEBTTSCE
T ss_pred C-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeE---e-eCCC---CCCCeEEECCCCCE
Confidence 5 543 3444566778999999999999777788999999997 4432 11111 2 1222 46678999999987
Q ss_pred EEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEE-ecCCCEEEEEEcCCeEEEEECCCCeEE
Q 003871 652 LLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY-SCDGKCIYVSCKSGHVKVFDTSTLELR 715 (790)
Q Consensus 652 l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~-s~dg~~l~sgs~dg~i~vwd~~~~~~~ 715 (790)
.++. ++.|.+||.. ++.+..+..+ .. +.+++| +|+++.|++++.+ .+.-++..+.++.
T Consensus 232 ~v~~-~~~v~~~~~~-g~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 232 WASA-GDGVHVLTPD-GDELGRVLTP--QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEEE-TTEEEEECTT-SCEEEEEECS--SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred EEEc-CCeEEEECCC-CCEEEEEECC--CC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 7666 8899999986 7777777542 34 899999 5899999988865 5666677776543
No 192
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.50 E-value=8e-12 Score=132.17 Aligned_cols=279 Identities=12% Similarity=0.052 Sum_probs=184.6
Q ss_pred CCCCCCcccceeccC-----CCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEe----------CC
Q 003871 398 STSLPDADSAVCAKS-----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QT 462 (790)
Q Consensus 398 ~dg~~la~~~at~s~-----d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~----------~d 462 (790)
||++.+ +.... ++.|.+.|... ......+.. | ..+ .+++||||+++++++ .+
T Consensus 42 pd~~~v----yV~~~~~~~~~~~V~ViD~~t---~~v~~~I~v---G-~~P--~va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 42 PDARRV----YVNDPAHFAAVTQQFVIDGEA---GRVIGMIDG---G-FLP--NPVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCTTEE----EEEECGGGCSSEEEEEEETTT---TEEEEEEEE---C-SSC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCCCEE----EEEcCcccCCCCEEEEEECCC---CeEEEEEEC---C-CCC--cEEECCCCCEEEEEcccccccccCCCC
Confidence 889887 55543 67999999973 233334332 2 223 399999999988876 35
Q ss_pred CcEEEEecCCCCccccccccccccccccCCCceeeeecccCC-----CCCCeEEEEec--CcEEEEec---CCeEEEEEC
Q 003871 463 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD-----PKDSISCFALR--GSHLFSAS---GGKISIFSL 532 (790)
Q Consensus 463 g~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~V~~l~~s--~~~l~s~s---dg~I~vwd~ 532 (790)
+.|.+||..+... ........ .......++|+ |++++++. ++.|.++|+
T Consensus 109 ~~VsviD~~t~~v---------------------~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~ 167 (386)
T 3sjl_D 109 DYVEVFDPVTLLP---------------------TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL 167 (386)
T ss_dssp EEEEEECTTTCCE---------------------EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET
T ss_pred CEEEEEECCCCeE---------------------EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEEC
Confidence 7899998876443 11110000 12245568888 88777664 589999999
Q ss_pred CCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CceEEEEcCC----CCCEE-EEEEe-CCCCEEEE
Q 003871 533 ETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGH----QNRIT-CLAYS-LSLNVLVS 603 (790)
Q Consensus 533 ~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~-~~~~~~l~~h----~~~v~-~l~~s-pdg~~l~s 603 (790)
.+++.+.++.... |..+.|.| .+++.+.||.+.+.++.+ ++.......+ ..++. ...|. ++|++++
T Consensus 168 ~t~~vv~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~- 242 (386)
T 3sjl_D 168 EGKAFKRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW- 242 (386)
T ss_dssp TTTEEEEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-
T ss_pred CCCcEEEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-
Confidence 9999999886432 12233544 677888899999999876 5543222111 12221 24564 6775444
Q ss_pred EeCCCcEEEEECCCCceeeceeee-----eeccCCCCCCCCeEEEEEeCCCCEEEEE-e----------CCcEEEEECCC
Q 003871 604 SGADAQLCVWDAVGWKKLCSKFLH-----SFQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPT 667 (790)
Q Consensus 604 ~s~dg~I~vwd~~~~~~~~~~~l~-----~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~----------dg~I~iwd~~~ 667 (790)
.+.+|+|.+.|+.++.......+. .+..+..+ +....++++|+++.+++. . .+.|.++|+.+
T Consensus 243 vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t 320 (386)
T 3sjl_D 243 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 320 (386)
T ss_dssp EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC
Confidence 666899999999875421111121 00111111 344568889999998884 2 14699999999
Q ss_pred CceeeeecCCCCCCCeEEEEEecCCC-EEEEEE-cCCeEEEEECCCCeEEEEecc
Q 003871 668 LNHTSQLVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQINL 720 (790)
Q Consensus 668 ~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs-~dg~i~vwd~~~~~~~~~~~~ 720 (790)
++.++.+.. ...+.+++|++|++ +|+++. .++.|.++|..+++.+..+..
T Consensus 321 ~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 321 GERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp CCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred CeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 999999865 45788999999997 666654 589999999999999988864
No 193
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.49 E-value=3.1e-12 Score=135.41 Aligned_cols=239 Identities=12% Similarity=0.063 Sum_probs=164.6
Q ss_pred CCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEE
Q 003871 507 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 582 (790)
Q Consensus 507 ~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l 582 (790)
..|.+++|+ +..++..+ ++.++.| .++....+..+...+.+++|+|+| +++++..++.|++||..+++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 345566666 33444444 7788888 355666777777778999999999 7788888999999999888766544
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCC----CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEe--
Q 003871 583 KGHQNRITCLAYSLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-- 656 (790)
Q Consensus 583 ~~h~~~v~~l~~spdg~~l~s~s~d----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-- 656 (790)
..+...+.+++++|+|+++++...+ +.|.+||..++.... .+. ..... ..+.+++++|+|+++++..
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~--~~~--~~~~~---~~~~~i~~d~~g~l~v~~~~~ 155 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD--IIE--DLSTA---YCIDDMVFDSKGGFYFTDFRG 155 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE--EEC--SSSSC---CCEEEEEECTTSCEEEEECCC
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE--EEc--cCccC---CcccceEECCCCCEEEEeccc
Confidence 4566789999999999988877766 689999998754321 111 01111 4689999999998877753
Q ss_pred -----CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEE-EEcCCeEEEEECCC-CeEEEEecccc-ccCCCC
Q 003871 657 -----EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVFDTST-LELRCQINLTA-YAQPGT 728 (790)
Q Consensus 657 -----dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-gs~dg~i~vwd~~~-~~~~~~~~~~~-~~~~gh 728 (790)
.+.|..+|..+++...... +...+..++|+|+|++|+. .+.++.|++||+.+ +.....+.... ....++
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~ 232 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPIIQ---NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH 232 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS
T ss_pred cccCCCceEEEEeCCCCEEEEeec---CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC
Confidence 2567777776555433221 1345789999999986654 45678999999964 33322211000 001121
Q ss_pred cccccceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 729 ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 729 ~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
.. +..+++++ +|+++++...++.|.+|++.
T Consensus 233 --~~--~~~i~~d~-~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 233 --EG--PDSCCIDS-DDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp --SE--EEEEEEBT-TCCEEEEEETTTEEEEECTT
T ss_pred --CC--CCceEECC-CCCEEEEEcCCCEEEEECCC
Confidence 12 34899999 89988888888999999984
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.49 E-value=6e-12 Score=128.62 Aligned_cols=236 Identities=12% Similarity=0.036 Sum_probs=162.4
Q ss_pred CeEEEEec--CcEEE-Eec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEE
Q 003871 508 SISCFALR--GSHLF-SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 582 (790)
Q Consensus 508 ~V~~l~~s--~~~l~-s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l 582 (790)
...+++++ |++++ +.. ++.|.+|+..++........+...+.+++++++| .+++.. ++.|.+||..++.. ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence 77889998 66555 434 7899999986554322212233467889999999 555555 88999999876543 333
Q ss_pred c-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcE
Q 003871 583 K-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 660 (790)
Q Consensus 583 ~-~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I 660 (790)
. .....+.+++++|+|+.+++...++.|.+||..+.... . ...... ..+.+++++|+|+++++. .++.|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-----~-~~~~~~---~~p~~i~~~~~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-----V-LPFTGL---NDPDGVAVDNSGNVYVTDTDNNRV 173 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE-----E-CCCCSC---CSCCCEEECTTCCEEEEEGGGTEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE-----e-eccccC---CCceeEEEeCCCCEEEEECCCCEE
Confidence 3 23357899999999998887777889999976553211 1 111111 357889999999866665 57899
Q ss_pred EEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEE
Q 003871 661 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 740 (790)
Q Consensus 661 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 740 (790)
.+||........... .+...+..++++++|.++++...++.|.+|+..+..... ... ++ ... +.++++
T Consensus 174 ~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~------~~-~~~--p~~i~~ 241 (270)
T 1rwi_B 174 VKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF------TG-LNT--PLAVAV 241 (270)
T ss_dssp EEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC------CS-CSC--EEEEEE
T ss_pred EEEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc------CC-CCC--ceeEEE
Confidence 999997665443222 123678999999999877777778999999987654332 110 11 122 448999
Q ss_pred ecCCCCEEEEEeCCCcEEEEecCCCcc
Q 003871 741 HPLEPNRIALGLTNGRVHVIEPLESEV 767 (790)
Q Consensus 741 sp~d~~~las~s~Dg~i~iW~~~~~~~ 767 (790)
+| +|+++++...+++|+++++...+.
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCccc
Confidence 99 789889989999999999877653
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.49 E-value=1.1e-12 Score=153.89 Aligned_cols=278 Identities=10% Similarity=-0.066 Sum_probs=173.0
Q ss_pred CCCCCCcccceeccCCC---ceEeeeccccCCCCceeeeecc---CCCCCCceEEEEEcCCCCEEEEEeC-----CCcEE
Q 003871 398 STSLPDADSAVCAKSLE---KSVNLKLQLINEPSECRTLLLP---DNSFGGRVVRLIYSHSGDFLVALTQ-----TATHK 466 (790)
Q Consensus 398 ~dg~~la~~~at~s~d~---~i~iwd~~~~~~~~~~~~~~l~---~~~h~~~V~~l~~spdg~~l~s~~~-----dg~i~ 466 (790)
|||+++ +....++ .-.+|..... .+....+.-+ ..+|...+.+++|||||++||.+.. +..|+
T Consensus 77 ~dG~~~----~~~~~~~~~~~~~l~~~~~~--~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~ 150 (695)
T 2bkl_A 77 RRNGRF----FYVRTHKDKEKAILYWRQGE--SGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLH 150 (695)
T ss_dssp EETTEE----EEEEECTTCSSCEEEEEEST--TSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEE
T ss_pred EECCEE----EEEEEcCCCeEEEEEEEcCC--CCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEE
Confidence 788887 5444332 4556665421 2232332211 1246667999999999999985433 46899
Q ss_pred EEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCe-------------EEEE
Q 003871 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGK-------------ISIF 530 (790)
Q Consensus 467 vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~-------------I~vw 530 (790)
+||+.++.. ...... .......++|+ |+.|+.++ +.. |++|
T Consensus 151 v~dl~tg~~--------------------~~~~~~---~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~ 207 (695)
T 2bkl_A 151 VIDVDSGEW--------------------SKVDVI---EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYH 207 (695)
T ss_dssp EEETTTCCB--------------------CSSCCB---SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEE
T ss_pred EEECCCCCC--------------------cCCccc---CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEE
Confidence 999887543 000000 01112578898 77888777 554 9999
Q ss_pred ECCCCcE--EEEE--cCCCCCeEEEEEcCCC-eEEEEeCCC----cEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEE
Q 003871 531 SLETFQT--LATF--ANPPPIATYFILLPQD-LFAFGFDDS----SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 601 (790)
Q Consensus 531 d~~~~~~--~~~~--~~~~~~v~~l~~s~~g-~l~sgs~dg----~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l 601 (790)
++.++.. ...+ ..+...+..+.|+||| +|+.++.++ .|++|+..+++. ..+..+...+....+ ++|+++
T Consensus 208 ~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~ 285 (695)
T 2bkl_A 208 TLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFY 285 (695)
T ss_dssp ETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEE
T ss_pred ECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEE
Confidence 9988762 2333 3344578899999999 777666555 778887665543 445455556666666 566644
Q ss_pred EEEe---CCCcEEEEECCCCceeeceeeeeeccCC-CCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECC-CCceeeeec
Q 003871 602 VSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGL-VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP-TLNHTSQLV 675 (790)
Q Consensus 602 ~s~s---~dg~I~vwd~~~~~~~~~~~l~~~~~~~-~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~-~~~~~~~~~ 675 (790)
+.+. .++.|.+||+.++.... ...+...+ . ..+..++|+ ++.++++. .|+..++|.+. +++....+.
T Consensus 286 ~~s~~~~~~~~l~~~d~~~~~~~~---~~~l~~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~ 358 (695)
T 2bkl_A 286 VLTDEGAPRQRVFEVDPAKPARAS---WKEIVPEDSS---ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ 358 (695)
T ss_dssp EEECTTCTTCEEEEEBTTBCSGGG---CEEEECCCSS---CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC
T ss_pred EEECCCCCCCEEEEEeCCCCCccC---CeEEecCCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec
Confidence 4443 25789999998753211 11122222 2 467888888 55566654 78876666543 355555554
Q ss_pred CCCCCCCeEEEEEecCCCEEEEEE----cCCeEEEEECCCCeE
Q 003871 676 PDKMDLPITYATYSCDGKCIYVSC----KSGHVKVFDTSTLEL 714 (790)
Q Consensus 676 ~~~h~~~v~~l~~s~dg~~l~sgs----~dg~i~vwd~~~~~~ 714 (790)
.+ ....+..++++|+++.++... ..+.|++||+.+++.
T Consensus 359 ~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 359 LP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp CS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 32 256677888999998776333 347899999999874
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.48 E-value=9.3e-11 Score=125.69 Aligned_cols=275 Identities=8% Similarity=-0.005 Sum_probs=181.8
Q ss_pred CCCCCCcccceeccC--CC---ceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEe----------CC
Q 003871 398 STSLPDADSAVCAKS--LE---KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QT 462 (790)
Q Consensus 398 ~dg~~la~~~at~s~--d~---~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~----------~d 462 (790)
||++.+ +.+.. .. +|.++|... .+... .++. + ..+ .+++||||++++++. .+
T Consensus 30 ~~~~~~----yv~~~~~~~~~~~v~v~D~~t----~~~~~-~i~~-g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~ 96 (373)
T 2mad_H 30 ADGRRS----YINLPAHHSAIIQQWVLDAGS----GSILG-HVNG-G-FLP--NPVAAHSGSEFALASTSFSRIAKGKRT 96 (373)
T ss_pred CCCCEE----EEeCCcccCCccEEEEEECCC----CeEEE-EecC-C-CCC--CeEECCCCCEEEEEeccccccccCCCC
Confidence 677766 54443 33 889999873 33322 2221 1 223 999999999999886 36
Q ss_pred CcEEEEecCCCCccccccccccccccccCCCceeeeecccC-----CCCCCeEEEEec--CcEEEEec---CCeEEEEEC
Q 003871 463 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-----DPKDSISCFALR--GSHLFSAS---GGKISIFSL 532 (790)
Q Consensus 463 g~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~V~~l~~s--~~~l~s~s---dg~I~vwd~ 532 (790)
+.|.+||..+... ....... .+......++|+ |++|++++ ++.|.++|
T Consensus 97 ~~v~viD~~t~~~---------------------~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD- 154 (373)
T 2mad_H 97 DYVEVFDPVTFLP---------------------IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV- 154 (373)
T ss_pred CeEEEEECCCCcE---------------------EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-
Confidence 7899998865432 1100000 011234578888 88888765 37899999
Q ss_pred CCCcEEEE-EcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEc-----CCCCC-EEEEEEeCCCCEEEE
Q 003871 533 ETFQTLAT-FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-----GHQNR-ITCLAYSLSLNVLVS 603 (790)
Q Consensus 533 ~~~~~~~~-~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~-----~h~~~-v~~l~~spdg~~l~s 603 (790)
.+++.+.. +.... ++.+.|++ .+++.+.||.+.++|. +++...... ....+ .....+.+++..++.
T Consensus 155 ~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 229 (373)
T 2mad_H 155 QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW 229 (373)
T ss_pred CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEE
Confidence 99998877 64322 24556666 6667778999999999 887663322 11122 223566777666555
Q ss_pred EeCCCcEEEEECCCCceeeceeeeeec------cCCCCCCCCeEEEEEeCCCCEEEEE-e----------CCcEEEEECC
Q 003871 604 SGADAQLCVWDAVGWKKLCSKFLHSFQ------TGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAP 666 (790)
Q Consensus 604 ~s~dg~I~vwd~~~~~~~~~~~l~~~~------~~~~~~~~~v~~i~~sp~~~~l~~~-~----------dg~I~iwd~~ 666 (790)
.+..+.+.+.|+.++.......+. +. .+..+ .....++++|+++.+++. . ++.|.++|..
T Consensus 230 ~~~~~~v~vid~~~~~~~v~~~~~-~~~~~~~~~~~~p--~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~ 306 (373)
T 2mad_H 230 PVYSGKILQADISAAGATNKAPID-ALSGGRKADTWRP--GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL 306 (373)
T ss_pred EcCCceEEEEeccCCcceEeeeee-ecCCcccccceec--CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECC
Confidence 557889999999764321111111 10 01111 234558899999988874 2 2579999999
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCCC-EEEEEE-cCCeEEEEECCCCeEEEEe
Q 003871 667 TLNHTSQLVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 667 ~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs-~dg~i~vwd~~~~~~~~~~ 718 (790)
+++.+.++.. .....+++|+|||+ .++++. .++.|.+||..+++.+..+
T Consensus 307 t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 307 VGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 9999998864 44689999999999 777776 5899999999999988774
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.48 E-value=7.9e-12 Score=127.76 Aligned_cols=236 Identities=9% Similarity=-0.013 Sum_probs=162.2
Q ss_pred ceEEEEEcCCCCEEE-EEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEE
Q 003871 443 RVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 519 (790)
Q Consensus 443 ~V~~l~~spdg~~l~-s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l 519 (790)
...+++++++|+..+ +.+.++.|.+|+..+... .. ........+.+++++ |+++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~---------------------~~--~~~~~~~~p~~i~~~~~g~l~ 81 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT---------------------TV--LPFNGLYQPQGLAVDGAGTVY 81 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------------------------EE--CCCCSCCSCCCEEECTTCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc---------------------ce--EeeCCcCCcceeEECCCCCEE
Confidence 788999999999555 335688999988654221 00 001233457788888 5654
Q ss_pred EEecCCeEEEEECCCCcEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCC
Q 003871 520 FSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 597 (790)
Q Consensus 520 ~s~sdg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd 597 (790)
++..++.|.+||..+... ..+. .....+..++++++| .+++...++.|.+|+..+.............+.+++++|+
T Consensus 82 v~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~ 160 (270)
T 1rwi_B 82 VTDFNNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS 160 (270)
T ss_dssp EEETTTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTT
T ss_pred EEcCCCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCC
Confidence 444488999999876543 3333 223568899999999 7777777889999986654433222223346788999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecC
Q 003871 598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVP 676 (790)
Q Consensus 598 g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~ 676 (790)
|+++++...++.|.+||..++... . ...... ..+.+++++++|..+++. .++.|.+||....... ....
T Consensus 161 g~l~v~~~~~~~i~~~~~~~~~~~-----~-~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~~~ 230 (270)
T 1rwi_B 161 GNVYVTDTDNNRVVKLEAESNNQV-----V-LPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPF 230 (270)
T ss_dssp CCEEEEEGGGTEEEEECTTTCCEE-----E-CCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-ECCC
T ss_pred CCEEEEECCCCEEEEEecCCCceE-----e-ecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-eecc
Confidence 998777777889999998874321 1 111111 368899999999766665 5788999998754432 2221
Q ss_pred CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003871 677 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 677 ~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~ 713 (790)
.+...+.+++++++|+++++...++.|+++++...+
T Consensus 231 -~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 231 -TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp -CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred -CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 224678999999999988888899999999987654
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.46 E-value=6.9e-10 Score=114.87 Aligned_cols=275 Identities=8% Similarity=-0.014 Sum_probs=185.9
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--Cc
Q 003871 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 517 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~ 517 (790)
....+.++++.++|+..++...++.|.+|+.. +.. ..... ......+.++++. +.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~---------------------~~~~~-~~~~~~~~~i~~~~~g~ 74 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI---------------------KEFEV-PTPDAKVMCLIVSSLGD 74 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE---------------------EEEEC-SSTTCCEEEEEECTTSC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce---------------------EEEEC-CCCCCcceeEEECCCCC
Confidence 35678999999999976666668899998865 221 11111 1234678889988 66
Q ss_pred EEEEec-CCeEEEEECCCCcEEEE-EcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE-EEcCCCCCEEEEE
Q 003871 518 HLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-KLKGHQNRITCLA 593 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~~~~~~~~-~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~-~l~~h~~~v~~l~ 593 (790)
+.++.. ++.|..||.. ++.... .......+.++++.++| .+++...++.|..+|.. ++... .+......+.+++
T Consensus 75 l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 75 IWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE
T ss_pred EEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEE
Confidence 666555 6899999988 655322 22234668999999999 66666667899999987 65542 2333456789999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceee
Q 003871 594 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 672 (790)
Q Consensus 594 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~ 672 (790)
+.++|+..++...++.|..+|. +++.. .+. .+. .. ..+..++++++|...++. ..+.|.+||. +++...
T Consensus 153 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~-~~~-~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~ 222 (300)
T 2qc5_A 153 LGSDNALWFTENQNNSIGRITN-TGKLE---EYP-LPT-NA---AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE 222 (300)
T ss_dssp ECTTSSEEEEETTTTEEEEECT-TCCEE---EEE-CSS-TT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred ECCCCCEEEEecCCCeEEEECC-CCcEE---Eee-CCC-CC---CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE
Confidence 9999997777666789999998 44322 111 111 11 468899999999877765 4667999998 555443
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEe
Q 003871 673 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 752 (790)
Q Consensus 673 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s 752 (790)
... ..+...+.+++++++|++.++...++.|..||. +++.. .+... .. ...+. ++++.| +|.+.++..
T Consensus 223 ~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~-----~~-~~~~~--~i~~~~-~g~l~v~~~ 290 (300)
T 2qc5_A 223 YDI-PTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ-----TE-NAEPH--GITFGK-DGSVWFALK 290 (300)
T ss_dssp EEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC-----ST-TCCCC--CEEECT-TSCEEEECS
T ss_pred EEC-CCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC-----cc-CCccc--eeEeCC-CCCEEEEcc
Confidence 322 223567899999999997776666799999998 45543 22111 11 22344 888999 788666554
Q ss_pred CCCcEEEEecC
Q 003871 753 TNGRVHVIEPL 763 (790)
Q Consensus 753 ~Dg~i~iW~~~ 763 (790)
+ .|..+++.
T Consensus 291 -~-~i~~~~p~ 299 (300)
T 2qc5_A 291 -C-KIGKLNLN 299 (300)
T ss_dssp -S-EEEEEEEC
T ss_pred -C-ceEEeCCC
Confidence 4 77777764
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.44 E-value=4.4e-12 Score=130.11 Aligned_cols=193 Identities=10% Similarity=-0.019 Sum_probs=151.5
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCceEEEEcCCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCC
Q 003871 555 PQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 633 (790)
Q Consensus 555 ~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 633 (790)
|+..|++++.++.|++||.++|+.+..+..+. ..+++++++|+|++++ +.++.|..||. +|+.+.. +..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~-----~~~~~ 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWN-----IAAPA 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEE-----EECCT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEE-----EcCCC
Confidence 33388999999999999999999999998765 4788999999999888 45788999999 6654332 22222
Q ss_pred CCCCCCeEEEEEeCCCCEEEEE-e-CCcEEEEECCCCceeeeecCCC----CCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 003871 634 VPETTIVNHIQFHPDQIHLLSI-H-EGQIDVYEAPTLNHTSQLVPDK----MDLPITYATYSCDGKCIYVSCKSGHVKVF 707 (790)
Q Consensus 634 ~~~~~~v~~i~~sp~~~~l~~~-~-dg~I~iwd~~~~~~~~~~~~~~----h~~~v~~l~~s~dg~~l~sgs~dg~i~vw 707 (790)
. ..+.++.+.|+|+++++. . ++.|..+|. +|+.+..+.... +......+++.++|+++++...++.|..|
T Consensus 76 ~---~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 76 G---CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREI 151 (276)
T ss_dssp T---CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEE
T ss_pred C---ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEE
Confidence 2 367889999999999984 4 677888886 688777664321 11345567889999999999999999999
Q ss_pred ECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccccccC
Q 003871 708 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 772 (790)
Q Consensus 708 d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~~ 772 (790)
|.. |+.+..+... ...+ ++...| +|+++++++.++.|..+|+.+|+..|...
T Consensus 152 d~~-G~~~w~~~~~---------~~~~--~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 152 APN-GQLLNSVKLS---------GTPF--SSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp CTT-SCEEEEEECS---------SCCC--EEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred CCC-CCEEEEEECC---------CCcc--ceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 998 9988887531 1334 677788 89999999988899999999999999864
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.44 E-value=5.1e-11 Score=126.03 Aligned_cols=279 Identities=12% Similarity=0.022 Sum_probs=186.2
Q ss_pred EEcCCCCEEEEEeC-----CCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEE
Q 003871 448 IYSHSGDFLVALTQ-----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 520 (790)
Q Consensus 448 ~~spdg~~l~s~~~-----dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~ 520 (790)
...|+++.+++... ++.|.+.|..+... +..... + ..+ . ++++ |++++
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v---------------------~~~I~v-G-~~P-~-va~spDG~~ly 93 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV---------------------IGMIDG-G-FLP-N-PVVADDGSFIA 93 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE---------------------EEEEEE-C-SSC-E-EEECTTSSCEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE---------------------EEEEEC-C-CCC-c-EEECCCCCEEE
Confidence 45789998888766 56888887765432 222211 1 223 3 8888 77666
Q ss_pred Eec-----------CCeEEEEECCCCcEEEEEcCCC-------CCeEEEEEcCCC-eEEEEeC--CCcEEEEeCCCCceE
Q 003871 521 SAS-----------GGKISIFSLETFQTLATFANPP-------PIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKTK 579 (790)
Q Consensus 521 s~s-----------dg~I~vwd~~~~~~~~~~~~~~-------~~v~~l~~s~~g-~l~sgs~--dg~I~iwd~~~~~~~ 579 (790)
+++ ++.|.+||..+++.+.++.-.. .....++++||| +++++.. ++.|.++|+.+++.+
T Consensus 94 Van~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 94 HASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred EEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence 553 4679999999999988875321 234679999999 7777753 689999999999998
Q ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeeceeeeeeccCCCCCCCCe-EEEEEe-CCCCEEEEEe
Q 003871 580 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIV-NHIQFH-PDQIHLLSIH 656 (790)
Q Consensus 580 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~-~~~~~~~~l~~~~~~~~~~~~~v-~~i~~s-p~~~~l~~~~ 656 (790)
..+... + . ...+....+.+++.+.||++.+.++.+ ++...... ..+.... .++ ....|. ++|++++++.
T Consensus 174 ~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~~~~~~~----~~~~~~~~~~~~dG~~~~vs~ 245 (386)
T 3sjl_D 174 RMLDVP-D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-EVFHPED----EFLINHPAYSQKAGRLVWPTY 245 (386)
T ss_dssp EEEECC-S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-CCCSCTT----SCBCSCCEEETTTTEEEEEBT
T ss_pred EEEECC-C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-ceecccc----ccccccceeEcCCCcEEEEeC
Confidence 888532 1 1 223433456777888899999999876 44321110 1011111 122 224664 7887777778
Q ss_pred CCcEEEEECCCCc--eeeeec--------CCCCCCCeEEEEEecCCCEEEEEEc----------CCeEEEEECCCCeEEE
Q 003871 657 EGQIDVYEAPTLN--HTSQLV--------PDKMDLPITYATYSCDGKCIYVSCK----------SGHVKVFDTSTLELRC 716 (790)
Q Consensus 657 dg~I~iwd~~~~~--~~~~~~--------~~~h~~~v~~l~~s~dg~~l~sgs~----------dg~i~vwd~~~~~~~~ 716 (790)
+|.|++.|..+.. .+..+. ..-.......++++++++.++.... .+.|.+.|+.+++.+.
T Consensus 246 ~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~ 325 (386)
T 3sjl_D 246 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA 325 (386)
T ss_dssp TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE
Confidence 8999999997654 333332 0001223345778999998887653 2579999999999998
Q ss_pred EeccccccCCCCcccccceEEEEEecCCCC-EEEEE-eCCCcEEEEecCCCcccccc
Q 003871 717 QINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALG-LTNGRVHVIEPLESEVEWGK 771 (790)
Q Consensus 717 ~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~las~-s~Dg~i~iW~~~~~~~~w~~ 771 (790)
.+.. ...++ +++++| |++ +|+++ ..++.|.++|..+++..-..
T Consensus 326 ~i~v---------g~~~~--~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 326 KFEM---------GHEID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp EEEE---------EEEEC--EEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEC---------CCCcc--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence 8764 22455 899999 775 66664 55899999999999866443
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.43 E-value=5.3e-10 Score=119.78 Aligned_cols=237 Identities=13% Similarity=0.094 Sum_probs=159.8
Q ss_pred EEEec--CcEEEEec-----------CCeEEEEECCCCcEEEEEcCC-------CCCeEEEEEcCCC-eEEEEeC--CCc
Q 003871 511 CFALR--GSHLFSAS-----------GGKISIFSLETFQTLATFANP-------PPIATYFILLPQD-LFAFGFD--DSS 567 (790)
Q Consensus 511 ~l~~s--~~~l~s~s-----------dg~I~vwd~~~~~~~~~~~~~-------~~~v~~l~~s~~g-~l~sgs~--dg~ 567 (790)
.++++ |++++++. ++.|.+||..+.+.+.++... ......++|+||| +++++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 88888 77777764 468999999998888776532 1234578999999 8877764 478
Q ss_pred EEEEeCCCCceEEE-EcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEE
Q 003871 568 ILVHCPCTKKTKAK-LKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 645 (790)
Q Consensus 568 I~iwd~~~~~~~~~-l~~h~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~ 645 (790)
|.++| .+++.+.. +.. .+ ++.+.|++ +.+++.+.||.+.++|. +++............+.. .......+
T Consensus 150 v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~---p~~~~~~~ 220 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ---NLLTQPAQ 220 (373)
T ss_pred EEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc---ceeeccee
Confidence 99999 99988877 543 22 24455655 45667778999999999 765432111100111111 11233566
Q ss_pred eCCCCEEE-EEeCCcEEEEECCCCc--eeeeecCCC--------CCCCeEEEEEecCCCEEEEEEc----------CCeE
Q 003871 646 HPDQIHLL-SIHEGQIDVYEAPTLN--HTSQLVPDK--------MDLPITYATYSCDGKCIYVSCK----------SGHV 704 (790)
Q Consensus 646 sp~~~~l~-~~~dg~I~iwd~~~~~--~~~~~~~~~--------h~~~v~~l~~s~dg~~l~sgs~----------dg~i 704 (790)
.+++..++ ++..+.+.+.|+.++. .+..+.... .......++++||++.++.+.. ++.|
T Consensus 221 ~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V 300 (373)
T 2mad_H 221 ANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred EecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE
Confidence 77665544 4677889999997543 222221100 0122445789999998887653 3589
Q ss_pred EEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCC-EEEEEe-CCCcEEEEecCCCccc
Q 003871 705 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESEVE 768 (790)
Q Consensus 705 ~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~las~s-~Dg~i~iW~~~~~~~~ 768 (790)
.++|..+++.+..+.. | ...+ +++|+| ||+ .++++. .++.|.+||+.+++..
T Consensus 301 ~VID~~t~~vv~~i~~------g---~~p~--~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 301 TSVTGLVGQTSSQISL------G---HDVD--AISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EEEECCCCEEEEEEEC------C---CCcC--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 9999999999888753 2 1344 899999 888 777777 5899999999998865
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=1.4e-10 Score=121.32 Aligned_cols=234 Identities=12% Similarity=0.068 Sum_probs=159.6
Q ss_pred CCCeEEEEec--CcEEEE-------ec-CCeEEEEECCCCcEEEEEc----CCCCCeEEEEEcCC-CeEEEEeCCCcEEE
Q 003871 506 KDSISCFALR--GSHLFS-------AS-GGKISIFSLETFQTLATFA----NPPPIATYFILLPQ-DLFAFGFDDSSILV 570 (790)
Q Consensus 506 ~~~V~~l~~s--~~~l~s-------~s-dg~I~vwd~~~~~~~~~~~----~~~~~v~~l~~s~~-g~l~sgs~dg~I~i 570 (790)
-....+++|+ +.++++ +. ++.|..||..+++...... ++...+.+++++++ |.+.+++..+.|.+
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~ 96 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence 3456789998 666666 34 7899999988877643222 13456889999999 74444444557999
Q ss_pred EeCCCCceEEE-EcC----CCCCEEEEEEeCCCCEEEEEeCC---------------CcEEEEECCCCceeeceeeeeec
Q 003871 571 HCPCTKKTKAK-LKG----HQNRITCLAYSLSLNVLVSSGAD---------------AQLCVWDAVGWKKLCSKFLHSFQ 630 (790)
Q Consensus 571 wd~~~~~~~~~-l~~----h~~~v~~l~~spdg~~l~s~s~d---------------g~I~vwd~~~~~~~~~~~l~~~~ 630 (790)
||.. ++.... ... ....+.+++++|+|+++++...+ +.|..||.. ++... + .
T Consensus 97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~---~---~ 168 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ---V---D 168 (314)
T ss_dssp EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE---E---E
T ss_pred EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE---e---c
Confidence 9988 765432 221 12358899999999888776654 567777765 33211 1 1
Q ss_pred cCCCCCCCCeEEEEEe----CCCCEEEEE--eCCcEEEEECC-CCce-----eeeecCCCCC-CCeEEEEEecCCCEEEE
Q 003871 631 TGLVPETTIVNHIQFH----PDQIHLLSI--HEGQIDVYEAP-TLNH-----TSQLVPDKMD-LPITYATYSCDGKCIYV 697 (790)
Q Consensus 631 ~~~~~~~~~v~~i~~s----p~~~~l~~~--~dg~I~iwd~~-~~~~-----~~~~~~~~h~-~~v~~l~~s~dg~~l~s 697 (790)
... .....++++ |+++.++++ .++.|.+||.. +++. ...+. .+. ..+..++++++|+++++
T Consensus 169 ~~~----~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~ 242 (314)
T 1pjx_A 169 TAF----QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP--GTHEGGADGMDFDEDNNLLVA 242 (314)
T ss_dssp EEE----SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC--CCSSCEEEEEEEBTTCCEEEE
T ss_pred cCC----CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC--CCCCCCCCceEECCCCCEEEE
Confidence 111 356789999 999776664 57889999976 4432 22221 122 56789999999998888
Q ss_pred EEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCE-EEEEeCCCcEEEEecCC
Q 003871 698 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR-IALGLTNGRVHVIEPLE 764 (790)
Q Consensus 698 gs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~-las~s~Dg~i~iW~~~~ 764 (790)
...++.|.+||..+++....+.. + ... +.+++|+| +++. +++...++.|..|++..
T Consensus 243 ~~~~~~i~~~d~~~g~~~~~~~~-------~-~~~--~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 243 NWGSSHIEVFGPDGGQPKMRIRC-------P-FEK--PSNLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EETTTEEEEECTTCBSCSEEEEC-------S-SSC--EEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred EcCCCEEEEEcCCCCcEeEEEeC-------C-CCC--ceeEEECC-CCCEEEEEeCCCCeEEEEeCCC
Confidence 88899999999987876655532 1 223 44899999 8884 45555678999999865
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.39 E-value=2.1e-11 Score=143.97 Aligned_cols=279 Identities=13% Similarity=0.014 Sum_probs=167.7
Q ss_pred CCCCCCcccceeccCCC---ceEeeeccccC-CCCceeeee-c--cCCCCCCceEEEEEcCCCCEEEEEeCC-----CcE
Q 003871 398 STSLPDADSAVCAKSLE---KSVNLKLQLIN-EPSECRTLL-L--PDNSFGGRVVRLIYSHSGDFLVALTQT-----ATH 465 (790)
Q Consensus 398 ~dg~~la~~~at~s~d~---~i~iwd~~~~~-~~~~~~~~~-l--~~~~h~~~V~~l~~spdg~~l~s~~~d-----g~i 465 (790)
|||+++ +....++ .-.+|..+... ..+....+. . ...+|...+..++|||||++|+.++.+ ..|
T Consensus 116 pdG~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i 191 (741)
T 1yr2_A 116 RRGASV----FYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTV 191 (741)
T ss_dssp EETTEE----EEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEE
T ss_pred EECCEE----EEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEE
Confidence 889988 5443332 36677664210 012222211 0 012344578899999999999988764 358
Q ss_pred EEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEec-CC--------------eEEE
Q 003871 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GG--------------KISI 529 (790)
Q Consensus 466 ~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~s-dg--------------~I~v 529 (790)
++||+.++.. ..... +...+..++|+ ++.|+.++ ++ .|.+
T Consensus 192 ~v~dl~tg~~---------------------~~~~~---~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~ 247 (741)
T 1yr2_A 192 KFVGVADGKP---------------------LADEL---KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWL 247 (741)
T ss_dssp EEEETTTCCE---------------------EEEEE---EEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEE
T ss_pred EEEECCCCCC---------------------CCccC---CCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEE
Confidence 8888876543 11100 11112356676 55555554 32 4899
Q ss_pred EECCCCcE--EEEEcC--CCCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCC--ceEEEEcCCCCCEEEEEEeCC
Q 003871 530 FSLETFQT--LATFAN--PPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTK--KTKAKLKGHQNRITCLAYSLS 597 (790)
Q Consensus 530 wd~~~~~~--~~~~~~--~~~~v~~l~~s~~g-~l~sgs~d-----g~I~iwd~~~~--~~~~~l~~h~~~v~~l~~spd 597 (790)
|++.++.. ...+.. +...+..+.|+||| +|+..+.+ ..|++||+.++ +....+..+...+.... +|+
T Consensus 248 ~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~d 326 (741)
T 1yr2_A 248 HRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGV 326 (741)
T ss_dssp EETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEE
T ss_pred EECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ecc
Confidence 99987652 233333 23357899999999 77766644 38999999877 31455555555555553 589
Q ss_pred CCEEEEEeCC----CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECC-CCcee
Q 003871 598 LNVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP-TLNHT 671 (790)
Q Consensus 598 g~~l~s~s~d----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~-~~~~~ 671 (790)
|+.|+..+.+ +.|.+||+.++. . ....+..++. ..+..++++ ++.++++. .|+..+||.+. ++...
T Consensus 327 g~~l~~~s~~~~~~~~l~~~d~~~~~-~---~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 327 GDQLWFVSGDGAPLKKIVRVDLSGST-P---RFDTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp TTEEEEEECTTCTTCEEEEEECSSSS-C---EEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCc-c---ccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence 9998887764 459999998742 0 1121223333 356677887 44455553 77775555433 45555
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEE-E---cCCeEEEEECCCCeE
Q 003871 672 SQLVPDKMDLPITYATYSCDGKCIYVS-C---KSGHVKVFDTSTLEL 714 (790)
Q Consensus 672 ~~~~~~~h~~~v~~l~~s~dg~~l~sg-s---~dg~i~vwd~~~~~~ 714 (790)
..+..+ +...+..++++|+++.++.. + ..++|++||+.+++.
T Consensus 399 ~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 399 GAVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eeccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 655432 25678899999998866533 2 348899999999873
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.39 E-value=3.4e-11 Score=142.15 Aligned_cols=242 Identities=11% Similarity=0.023 Sum_probs=154.6
Q ss_pred CCCCeEEEEec--CcEEEEec--CC----eEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCC----------
Q 003871 505 PKDSISCFALR--GSHLFSAS--GG----KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDS---------- 566 (790)
Q Consensus 505 ~~~~V~~l~~s--~~~l~s~s--dg----~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg---------- 566 (790)
+...+..++|+ |++|+.+. +| .|++||+.+++.+.... +...+..++|+||..|+.++.++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTTSEEEEEECCCC--------C
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECCCEEEEEEecCcccccccccC
Confidence 44468889999 88888776 23 69999999998765321 11123578999987344444443
Q ss_pred ----cEEEEeCCCCce--EEEEc--CCCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCceeeceeeeeeccCC
Q 003871 567 ----SILVHCPCTKKT--KAKLK--GHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGL 633 (790)
Q Consensus 567 ----~I~iwd~~~~~~--~~~l~--~h~~~v~~l~~spdg~~l~s~s~dg-----~I~vwd~~~~~~~~~~~l~~~~~~~ 633 (790)
.|++|++.++.. ...+. .+...+.++.|+|||++|+..+.++ .|++||+.++... ....+....
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~---~~~~l~~~~ 316 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG---PVTALIPDL 316 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC---CCEEEECSS
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc---ccEEecCCC
Confidence 399999987752 22333 3444688999999999988877544 7999999875211 012122222
Q ss_pred CCCCCCeEEEEEeCCCCEEEE-Ee----CCcEEEEECCCC-ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 003871 634 VPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 707 (790)
Q Consensus 634 ~~~~~~v~~i~~sp~~~~l~~-~~----dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vw 707 (790)
..+... ++|+|+.|+. +. ++.|.+||+.++ .....+... +...+..++|+ ++.++++...|+..++|
T Consensus 317 ----~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 317 ----KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp ----SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred ----CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 234444 3588888887 33 345999999875 233444432 34556778887 66778888889887777
Q ss_pred ECC-CCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEE-EEe---CCCcEEEEecCCCcc
Q 003871 708 DTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGL---TNGRVHVIEPLESEV 767 (790)
Q Consensus 708 d~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~la-s~s---~Dg~i~iW~~~~~~~ 767 (790)
.+. +++....+.. +..+.+. .++++| +++.++ +.+ ..++|++||+.+++.
T Consensus 390 ~~~~~g~~~~~l~~-------~~~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 390 AFDLDGKPAGAVSL-------PGIGSAS--GLSGRP-GDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEETTSCEEEECBC-------SSSCEEE--EEECCB-TCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEeCCCCceeeccC-------CCCeEEE--EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 554 4554554431 1123344 889999 666554 333 347899999988763
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.38 E-value=1.1e-09 Score=113.35 Aligned_cols=270 Identities=11% Similarity=0.032 Sum_probs=184.0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 464 (790)
.++++. ++|+.. ++...++.|.+||.. +....+.++ .+...+.++++.++|+..++...++.
T Consensus 23 ~~i~~d-------~~g~l~----v~~~~~~~v~~~~~~-----~~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~~~~ 84 (300)
T 2qc5_A 23 YGITSS-------EDGKVW----FTQHKANKISSLDQS-----GRIKEFEVP--TPDAKVMCLIVSSLGDIWFTENGANK 84 (300)
T ss_dssp EEEEEC-------TTSCEE----EEETTTTEEEEECTT-----SCEEEEECS--STTCCEEEEEECTTSCEEEEETTTTE
T ss_pred ceeeEC-------CCCCEE----EEcCCCCeEEEECCC-----CceEEEECC--CCCCcceeEEECCCCCEEEEecCCCe
Confidence 678887 889877 777778999999975 333333332 23467999999999996666655788
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEE-
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT- 540 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~- 540 (790)
|..||.. +. ...... ......+.++++. ++++++.. ++.|..+|.. ++....
T Consensus 85 v~~~d~~-g~---------------------~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~ 140 (300)
T 2qc5_A 85 IGKLSKK-GG---------------------FTEYPL-PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD 140 (300)
T ss_dssp EEEECTT-SC---------------------EEEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred EEEECCC-CC---------------------eEEecC-CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc
Confidence 8888765 22 111111 1234568889988 66666665 7899999987 655432
Q ss_pred EcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEE-EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 003871 541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (790)
Q Consensus 541 ~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~-l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 618 (790)
+......+..+++.++| ..++...++.|..+|. +++.... ...+...+.+++++++|+..++....+.|.+||. ++
T Consensus 141 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g 218 (300)
T 2qc5_A 141 LPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TG 218 (300)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred CCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CC
Confidence 23345568899999999 6666666789999998 5654432 2234457899999999987777767778999998 43
Q ss_pred ceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEE
Q 003871 619 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 697 (790)
Q Consensus 619 ~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 697 (790)
+... .. .+.. . ..+.+++++++|+..++. .++.|..||. +++.. .+........+.+++++++|++.++
T Consensus 219 ~~~~---~~-~~~~-~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~ 288 (300)
T 2qc5_A 219 EISE---YD-IPTP-N---ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFA 288 (300)
T ss_dssp CEEE---EE-CSST-T---CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEE
T ss_pred cEEE---EE-CCCC-C---CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEE
Confidence 3211 11 2211 2 468899999999866665 4688999998 45443 3322223466889999999986665
Q ss_pred EEcCCeEEEEECC
Q 003871 698 SCKSGHVKVFDTS 710 (790)
Q Consensus 698 gs~dg~i~vwd~~ 710 (790)
.. + .|..+|..
T Consensus 289 ~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 289 LK-C-KIGKLNLN 299 (300)
T ss_dssp CS-S-EEEEEEEC
T ss_pred cc-C-ceEEeCCC
Confidence 54 4 77777653
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.38 E-value=5.5e-11 Score=128.12 Aligned_cols=279 Identities=12% Similarity=0.057 Sum_probs=184.6
Q ss_pred CCCCCCcccceeccCC----CceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEe----------CCC
Q 003871 398 STSLPDADSAVCAKSL----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTA 463 (790)
Q Consensus 398 ~dg~~la~~~at~s~d----~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~----------~dg 463 (790)
||++.+ +++...+ +.|.+.|... .....++.. + ..+ .++++|||++++++. .++
T Consensus 82 ~~~~~v---yV~n~~~~~~~~~VsVID~~t---~~vv~~I~v---G-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~ 149 (426)
T 3c75_H 82 PDARRV---YIQDPAHFAAITQQFVIDGST---GRILGMTDG---G-FLP--HPVAAEDGSFFAQASTVFERIARGKRTD 149 (426)
T ss_dssp CCTTEE---EEEECTTTCSSEEEEEEETTT---TEEEEEEEE---C-SSC--EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred CCCCEE---EEECCCcCCCCCeEEEEECCC---CEEEEEEEC---C-CCC--ceEECCCCCEEEEEeccccccccCCCCC
Confidence 556655 2444433 7999999974 233344443 2 233 899999999998886 367
Q ss_pred cEEEEecCCCCccccccccccccccccCCCceeeeecccC--C---CCCCeEEEEec--CcEEEEec---CCeEEEEECC
Q 003871 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA--D---PKDSISCFALR--GSHLFSAS---GGKISIFSLE 533 (790)
Q Consensus 464 ~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~--~---~~~~V~~l~~s--~~~l~s~s---dg~I~vwd~~ 533 (790)
.|.++|..+... ....... . .......++++ |++++++. ++.|.+.|+.
T Consensus 150 ~VsviD~~t~~v---------------------v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~ 208 (426)
T 3c75_H 150 YVEVFDPVTFLP---------------------IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLE 208 (426)
T ss_dssp EEEEECTTTCCE---------------------EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred EEEEEECCCCcE---------------------EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECC
Confidence 899888776443 1111000 0 11234567888 77877765 4789999999
Q ss_pred CCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEE----EcCCCCCE-EEEEEeCCCCEEEEEeC
Q 003871 534 TFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK----LKGHQNRI-TCLAYSLSLNVLVSSGA 606 (790)
Q Consensus 534 ~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~----l~~h~~~v-~~l~~spdg~~l~s~s~ 606 (790)
+++.+.++.... +....|++ .+++.+.||.+.+.+..+++.... +.....++ ..+.+.+++..++..+.
T Consensus 209 t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~ 284 (426)
T 3c75_H 209 GKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY 284 (426)
T ss_dssp TTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT
T ss_pred CCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC
Confidence 999998886422 13344555 566667788888888766655422 11111121 23567999988888888
Q ss_pred CCcEEEEECCCCceeeceeeee-----eccCCCCCCCCeEEEEEeCCCCEEEEE-e----------CCcEEEEECCCCce
Q 003871 607 DAQLCVWDAVGWKKLCSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNH 670 (790)
Q Consensus 607 dg~I~vwd~~~~~~~~~~~l~~-----~~~~~~~~~~~v~~i~~sp~~~~l~~~-~----------dg~I~iwd~~~~~~ 670 (790)
.+.+.+.|..++.......+.. +..+..+ .....++++|+++.+++. . ++.|.++|..+++.
T Consensus 285 ~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p--~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv 362 (426)
T 3c75_H 285 TGKIFQADLTAEGATFRAPIEALTEAERADDWRP--GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER 362 (426)
T ss_dssp TSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE--CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred CCcEEEEeccCCceEEeeeeeecccccccccccc--CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE
Confidence 8999999997643221111110 0001010 122347899999888774 2 24699999999999
Q ss_pred eeeecCCCCCCCeEEEEEecCCC-EEEEEE-cCCeEEEEECCCCeEEEEe
Q 003871 671 TSQLVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 671 ~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs-~dg~i~vwd~~~~~~~~~~ 718 (790)
+.++.. ......++|+|||+ +++++. .++.|.++|+.+++.+..+
T Consensus 363 v~~I~v---g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 363 INKIEL---GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEEC---CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999865 34588999999999 888887 5899999999999999886
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.33 E-value=6.3e-10 Score=116.23 Aligned_cols=242 Identities=11% Similarity=-0.010 Sum_probs=161.7
Q ss_pred CCceEEEEEcCCCCEEEE-------EeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecc--cCCCCCCeEE
Q 003871 441 GGRVVRLIYSHSGDFLVA-------LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDI--AADPKDSISC 511 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s-------~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~V~~ 511 (790)
-....+++|+++|+.+++ ...++.|.+|+..++.. ..... ..++...+.+
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~---------------------~~~~~~~~~~~~~~~~~ 75 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK---------------------TVICKPEVNGYGGIPAG 75 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE---------------------EEEECCEETTEECCEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE---------------------EEEEecccCCCCCCCce
Confidence 345688999999986666 46688899998655332 11000 0123456888
Q ss_pred EEec-C-cEEEEec-CCeEEEEECCCCcEEEE-EcCC----CCCeEEEEEcCCC-eEEEEeCC---------------Cc
Q 003871 512 FALR-G-SHLFSAS-GGKISIFSLETFQTLAT-FANP----PPIATYFILLPQD-LFAFGFDD---------------SS 567 (790)
Q Consensus 512 l~~s-~-~~l~s~s-dg~I~vwd~~~~~~~~~-~~~~----~~~v~~l~~s~~g-~l~sgs~d---------------g~ 567 (790)
++++ . ..++.++ ++.|.+||.. ++.... .... ...+.+++++++| .+++...+ +.
T Consensus 76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCe
Confidence 9998 5 6655555 6689999998 765433 2211 2347899999999 65555444 57
Q ss_pred EEEEeCCCCceEEEEcCCCCCEEEEEEe----CCCCEEEEE-eCCCcEEEEECC-CCceeeceeeeeeccCCCCCCCCeE
Q 003871 568 ILVHCPCTKKTKAKLKGHQNRITCLAYS----LSLNVLVSS-GADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVN 641 (790)
Q Consensus 568 I~iwd~~~~~~~~~l~~h~~~v~~l~~s----pdg~~l~s~-s~dg~I~vwd~~-~~~~~~~~~l~~~~~~~~~~~~~v~ 641 (790)
|..||.. ++..... .+......++++ |+++.++.+ ..++.|.+||.. +++......+..+..... ..+.
T Consensus 155 l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~---~~p~ 229 (314)
T 1pjx_A 155 IYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE---GGAD 229 (314)
T ss_dssp EEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS---CEEE
T ss_pred EEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC---CCCC
Confidence 8888876 5543332 234457899999 999765554 567899999986 443222122222222110 2477
Q ss_pred EEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE-EcCCeEEEEECCC
Q 003871 642 HIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTST 711 (790)
Q Consensus 642 ~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg-s~dg~i~vwd~~~ 711 (790)
.++++++|.++++. .++.|.+||..+++.+..+.. +...+.+++|+|+|+.|+.+ ..++.|..|++..
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 89999999887775 678999999987777666643 35779999999999965544 4568999999875
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.28 E-value=2.4e-09 Score=111.09 Aligned_cols=225 Identities=11% Similarity=0.087 Sum_probs=148.5
Q ss_pred CceEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcE
Q 003871 442 GRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 518 (790)
Q Consensus 442 ~~V~~l~~spdg~~l~s~~-~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~ 518 (790)
.-..+..|+|++..|+... .++.|..|+..++.. ... .....+.+++++ |+
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~---------------------~~~----~~~~~~~~i~~~~dG~- 66 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV---------------------QRV----TMDAPVSSVALRQSGG- 66 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE---------------------EEE----ECSSCEEEEEEBTTSS-
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE---------------------EEE----eCCCceEEEEECCCCC-
Confidence 3456788999766555554 478999988765322 111 134678899999 66
Q ss_pred EEEecCCeEEEEECCCCcEEEEEcCC----CCCeEEEEEcCCC-eEEEEeC-----------CCcEEEEeCCCCceEEEE
Q 003871 519 LFSASGGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFD-----------DSSILVHCPCTKKTKAKL 582 (790)
Q Consensus 519 l~s~sdg~I~vwd~~~~~~~~~~~~~----~~~v~~l~~s~~g-~l~sgs~-----------dg~I~iwd~~~~~~~~~l 582 (790)
++.+.++.|.+||..+++........ ...+..++++|+| ++++... .+.|+.++.. ++... +
T Consensus 67 l~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~ 144 (297)
T 3g4e_A 67 YVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-Y 144 (297)
T ss_dssp EEEEETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-E
T ss_pred EEEEECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-E
Confidence 44555778999999887654333221 2347889999999 5544322 2345555543 43332 3
Q ss_pred cCCCCCEEEEEEeCCCCEEE-EEeCCCcEEEEEC--CCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCC
Q 003871 583 KGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG 658 (790)
Q Consensus 583 ~~h~~~v~~l~~spdg~~l~-s~s~dg~I~vwd~--~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg 658 (790)
..+....+.++|+||++.++ +.+.++.|.+||+ .++.......+..+... . +....++++++|.+.++. ..+
T Consensus 145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~-~---~~p~g~~~d~~G~lwva~~~~~ 220 (297)
T 3g4e_A 145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE-E---QIPDGMCIDAEGKLWVACYNGG 220 (297)
T ss_dssp EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG-G---CEEEEEEEBTTSCEEEEEETTT
T ss_pred eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC-C---CCCCeeEECCCCCEEEEEcCCC
Confidence 23344578999999998765 4555789999997 45543222223222221 1 367889999999877765 567
Q ss_pred cEEEEECCCCceeeeecCCCCCCCeEEEEEe-cCCCEEEEEEc
Q 003871 659 QIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCK 700 (790)
Q Consensus 659 ~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~sgs~ 700 (790)
.|..||..+++.+..+..+ ...+++++|+ |+++.|+.++.
T Consensus 221 ~v~~~d~~tG~~~~~i~~p--~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVKLP--VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEECTTTCCEEEEEECS--SSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEcCCCceEEEEEECC--CCCceEEEEeCCCCCEEEEEcC
Confidence 8999999989988888642 4679999998 89887766554
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.27 E-value=2.9e-09 Score=115.68 Aligned_cols=246 Identities=8% Similarity=-0.038 Sum_probs=161.6
Q ss_pred CCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC--cEEEEeCCCCceE
Q 003871 506 KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTK 579 (790)
Q Consensus 506 ~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg--~I~iwd~~~~~~~ 579 (790)
-.....++|+ ++++++.. ++.|+.||..++......... .... ++|+|++ .++++..++ .|.+++..++...
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 3467889998 55555555 689999999887766555443 3334 9999999 888887766 7999998766544
Q ss_pred EEE----cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeee-ccCCCCCCCCeEEEEEeCCCCEEEE
Q 003871 580 AKL----KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLS 654 (790)
Q Consensus 580 ~~l----~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~-~~~~~~~~~~v~~i~~sp~~~~l~~ 654 (790)
..+ ......+.+++++|++..|+.+..++.|+.||..++... .+... ..+... ..+...++|+|++..|++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~---~~~~~~~~g~~~-~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT---LIKQLELSGSLG-TNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE---EEEECCCCSCCC-CSSCCEEEEETTTTEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE---EEecccccCCCC-CCccccEEEeCCCCEEEE
Confidence 444 224456788999995555666777889999999875421 11100 111110 011239999996555555
Q ss_pred E--eCCcEEEEECCCCceeeeecCCC-------------CCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEe
Q 003871 655 I--HEGQIDVYEAPTLNHTSQLVPDK-------------MDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 655 ~--~dg~I~iwd~~~~~~~~~~~~~~-------------h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~~~~~~~~~ 718 (790)
+ .++.|+.||... . +..+.+.. .-.....++++|+|+++++-+ .++.|+.|++.+|......
T Consensus 284 ~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 284 SDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp EETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred EeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 3 578899999863 3 23332211 023578999999999777777 7899999998888754332
Q ss_pred ccccccCCCCccc------ccceEEEEEecCCCCEEEEEeCCCcEEEEec
Q 003871 719 NLTAYAQPGTISL------ELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 719 ~~~~~~~~gh~~~------~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
.+... .|...+ --.+.+++++| ++.++++-..+++|+.+++
T Consensus 362 -g~~~~-~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 -GQVDV-ASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -ECTTC-BSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred -CCCCC-CCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 21000 010000 12366999999 7888888888889988875
No 210
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.27 E-value=7e-10 Score=128.53 Aligned_cols=293 Identities=10% Similarity=0.024 Sum_probs=186.1
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEE
Q 003871 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 531 (790)
Q Consensus 453 g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd 531 (790)
+..+++++.++.|.-+|..+++. +|......................+++.+..+++++ |+.|..+|
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD 144 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNR------------IWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALD 144 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEE------------EEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcE------------EEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEE
Confidence 44577777788888888877665 454332211000000000001123344556666666 99999999
Q ss_pred CCCCcEEEEEcCC-C----CCeEE-EEEcCCCeEEEEeC------CCcEEEEeCCCCceEEEEcCCCCC-----------
Q 003871 532 LETFQTLATFANP-P----PIATY-FILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQNR----------- 588 (790)
Q Consensus 532 ~~~~~~~~~~~~~-~----~~v~~-l~~s~~g~l~sgs~------dg~I~iwd~~~~~~~~~l~~h~~~----------- 588 (790)
..+|+.+.++... . ..+.+ ..+ .++.+++++. +|.|+.+|..+|+.+..+......
T Consensus 145 ~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~ 223 (677)
T 1kb0_A 145 AATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMK 223 (677)
T ss_dssp TTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred CCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccc
Confidence 9999999988754 2 11211 111 2445555543 689999999999988776532111
Q ss_pred ---------------------EEEEEEeCCCCEEEEEeCCC-------------------cEEEEECCCCceeeceeeee
Q 003871 589 ---------------------ITCLAYSLSLNVLVSSGADA-------------------QLCVWDAVGWKKLCSKFLHS 628 (790)
Q Consensus 589 ---------------------v~~l~~spdg~~l~s~s~dg-------------------~I~vwd~~~~~~~~~~~l~~ 628 (790)
...++++|++..++.++.++ .|..+|.++|+........
T Consensus 224 ~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~- 302 (677)
T 1kb0_A 224 RAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET- 302 (677)
T ss_dssp HHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-
T ss_pred cccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC-
Confidence 12578899988988887664 5999999998765433221
Q ss_pred eccCCCC----CCCCeEEEEEeCCC---CEEEEE-eCCcEEEEECCCCceeeeecCCCC---------CCCe--------
Q 003871 629 FQTGLVP----ETTIVNHIQFHPDQ---IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKM---------DLPI-------- 683 (790)
Q Consensus 629 ~~~~~~~----~~~~v~~i~~sp~~---~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h---------~~~v-------- 683 (790)
.|.. ......-+....+| ..++.+ .+|.++++|..+|+.+..+..... ..++
T Consensus 303 ---~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 379 (677)
T 1kb0_A 303 ---PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDG 379 (677)
T ss_dssp ---TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCT
T ss_pred ---CCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcC
Confidence 1100 00122333444577 456664 889999999999998766542210 0001
Q ss_pred ----------------EEEEEecCCCEEEEEEcC-------------------------------------------CeE
Q 003871 684 ----------------TYATYSCDGKCIYVSCKS-------------------------------------------GHV 704 (790)
Q Consensus 684 ----------------~~l~~s~dg~~l~sgs~d-------------------------------------------g~i 704 (790)
..++|+|++.++++...+ |.|
T Consensus 380 ~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l 459 (677)
T 1kb0_A 380 SKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRL 459 (677)
T ss_dssp TSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEE
T ss_pred CCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEE
Confidence 257899998888876542 789
Q ss_pred EEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccccccCCC
Q 003871 705 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 774 (790)
Q Consensus 705 ~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~~~~ 774 (790)
..||+.+|+.+-.+.. ...++ +..+.+ ++..++.++.||.+++||..+|+..|....+
T Consensus 460 ~A~D~~tG~~~W~~~~---------~~~~~--~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 460 LAWDPVAQKAAWSVEH---------VSPWN--GGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp EEEETTTTEEEEEEEE---------SSSCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEEeCCCCcEEeecCC---------CCCCc--CcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 9999999998877642 11222 334455 6778888999999999999999999976543
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.27 E-value=3.4e-09 Score=109.94 Aligned_cols=222 Identities=11% Similarity=0.009 Sum_probs=146.1
Q ss_pred CCCeEEEEec--Cc-EEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE
Q 003871 506 KDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA 580 (790)
Q Consensus 506 ~~~V~~l~~s--~~-~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~ 580 (790)
..-..+..|+ ++ ++++.. ++.|..||..+++. ..+. ....+.+++++++| ++++ . ++.|.+||..+++...
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVV 87 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEE
Confidence 3345577787 34 444544 78999999988765 3333 35678999999999 5544 3 5689999998876543
Q ss_pred EEcC----CCCCEEEEEEeCCCCEEEEEeCC---------CcEEEEECCC-CceeeceeeeeeccCCCCCCCCeEEEEEe
Q 003871 581 KLKG----HQNRITCLAYSLSLNVLVSSGAD---------AQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFH 646 (790)
Q Consensus 581 ~l~~----h~~~v~~l~~spdg~~l~s~s~d---------g~I~vwd~~~-~~~~~~~~l~~~~~~~~~~~~~v~~i~~s 646 (790)
.... ....+++++++|+|+++++...+ ..-.+|.+.. ++.. . +.... ...+.++|+
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~---~---~~~~~----~~pngi~~s 157 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK---K---YFDQV----DISNGLDWS 157 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE---E---EEEEE----SBEEEEEEC
T ss_pred EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE---E---Eeecc----ccccceEEc
Confidence 3221 12458899999999977654321 2334555443 2211 1 11111 356789999
Q ss_pred CCCCEEEEE--eCCcEEEEEC--CCCcee--eeec-CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003871 647 PDQIHLLSI--HEGQIDVYEA--PTLNHT--SQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 647 p~~~~l~~~--~dg~I~iwd~--~~~~~~--~~~~-~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~ 719 (790)
|+++.|+++ .++.|.+||+ .++... +.+. ...+...+..++++++|++.++...++.|.+||..+|+.+..+.
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 999988764 5788999987 455432 1121 11123567899999999988888788999999999999888775
Q ss_pred cccccCCCCcccccceEEEEEe-cCCCCEEEEEe
Q 003871 720 LTAYAQPGTISLELYPLVIAAH-PLEPNRIALGL 752 (790)
Q Consensus 720 ~~~~~~~gh~~~~v~~~~v~~s-p~d~~~las~s 752 (790)
.+ ... +.+++|. | +++.|..++
T Consensus 238 ~p--------~~~--~t~~~f~g~-d~~~L~vt~ 260 (297)
T 3g4e_A 238 LP--------VDK--TTSCCFGGK-NYSEMYVTC 260 (297)
T ss_dssp CS--------SSB--EEEEEEESG-GGCEEEEEE
T ss_pred CC--------CCC--ceEEEEeCC-CCCEEEEEc
Confidence 32 123 4499998 7 666655444
No 212
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.26 E-value=1.5e-09 Score=126.05 Aligned_cols=293 Identities=12% Similarity=0.037 Sum_probs=182.3
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEE
Q 003871 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 531 (790)
Q Consensus 453 g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd 531 (790)
+..+++++.++.|.-+|..+++. +|...................-..+++.+..+++++ |+.|..+|
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlD 137 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRL------------IWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAID 137 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCE------------EEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCce------------eEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEE
Confidence 55678888888999999887765 454332111000000000000112334466677776 99999999
Q ss_pred CCCCcEEEEEcCC-C-CCeEEEEEcC---CCeEEEEe------CCCcEEEEeCCCCceEEEEcCCC--------------
Q 003871 532 LETFQTLATFANP-P-PIATYFILLP---QDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQ-------------- 586 (790)
Q Consensus 532 ~~~~~~~~~~~~~-~-~~v~~l~~s~---~g~l~sgs------~dg~I~iwd~~~~~~~~~l~~h~-------------- 586 (790)
..+|+.+.++... . .....+..+| ++.+++++ .+|.|+.||..+|+.+..+....
T Consensus 138 a~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 217 (689)
T 1yiq_A 138 AKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI 217 (689)
T ss_dssp TTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred CCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence 9999999887643 1 1111111111 45444443 36899999999999887764210
Q ss_pred -----------------CCEEEEEEeCCCCEEEEEeCCCc-------------------EEEEECCCCceeeceeeeeec
Q 003871 587 -----------------NRITCLAYSLSLNVLVSSGADAQ-------------------LCVWDAVGWKKLCSKFLHSFQ 630 (790)
Q Consensus 587 -----------------~~v~~l~~spdg~~l~s~s~dg~-------------------I~vwd~~~~~~~~~~~l~~~~ 630 (790)
.....++++|++..++.++.++. |..+|.++|+........
T Consensus 218 ~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~--- 294 (689)
T 1yiq_A 218 AAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT--- 294 (689)
T ss_dssp HHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS---
T ss_pred cccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC---
Confidence 01125788998889999887764 999999998765432221
Q ss_pred cCCCC----CCCCeEEEEEeCCCC---EEEEE-eCCcEEEEECCCCceeeeecCCC------------------------
Q 003871 631 TGLVP----ETTIVNHIQFHPDQI---HLLSI-HEGQIDVYEAPTLNHTSQLVPDK------------------------ 678 (790)
Q Consensus 631 ~~~~~----~~~~v~~i~~sp~~~---~l~~~-~dg~I~iwd~~~~~~~~~~~~~~------------------------ 678 (790)
.|.. ...+........+|+ .++.+ .+|.++++|..+|+.+.......
T Consensus 295 -~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~ 373 (689)
T 1yiq_A 295 -PGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYW 373 (689)
T ss_dssp -TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTT
T ss_pred -CcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcccc
Confidence 1110 001222223333564 55554 88999999999999874332110
Q ss_pred --C-----------CCCeEEEEEecCCCEEEEEEc---------------------------------------------
Q 003871 679 --M-----------DLPITYATYSCDGKCIYVSCK--------------------------------------------- 700 (790)
Q Consensus 679 --h-----------~~~v~~l~~s~dg~~l~sgs~--------------------------------------------- 700 (790)
. ...-..++|+|+..++++...
T Consensus 374 ~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~ 453 (689)
T 1yiq_A 374 KNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSW 453 (689)
T ss_dssp TSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTC
T ss_pred CCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCc
Confidence 0 001123789999888887643
Q ss_pred CCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccccccCC
Q 003871 701 SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 773 (790)
Q Consensus 701 dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~~~ 773 (790)
+|.|+.||+.+|+.+-.+... . ... .-.+.. .+.+++.++.||.++.||..+|+..|....
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~--------~-~~~--~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYV--------T-IFN--GGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEES--------S-SCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceeEEEEECCCCCeEeEccCC--------C-Ccc--CccceE-CCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 378999999999988776532 1 122 223444 578999999999999999999999997644
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.26 E-value=7.4e-10 Score=117.66 Aligned_cols=186 Identities=10% Similarity=0.017 Sum_probs=136.6
Q ss_pred CCeEEEEec--CcEEEEecCCeEEEEECCCCc-----------EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 003871 507 DSISCFALR--GSHLFSASGGKISIFSLETFQ-----------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 572 (790)
Q Consensus 507 ~~V~~l~~s--~~~l~s~sdg~I~vwd~~~~~-----------~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd 572 (790)
.+++.++++ .+++++|+...+.+|++.+.+ ..... .+.. |+.++| ++ .|+++ .++.|++||
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 368889999 778888886677789875433 11222 3455 999999 77 88888 789999999
Q ss_pred CCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEE
Q 003871 573 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 652 (790)
Q Consensus 573 ~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l 652 (790)
+.+.........|...+.++.+.+. .+++++.||.+.+||+.++... .+. ..|++++|||+| ..
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~---~~~----------~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK---QLA----------QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE---EEE----------ESEEEEEECSSE-EE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc---ccc----------CCceEEEEcCCc-eE
Confidence 9877666666677888988877654 3888999999999999975532 122 479999999999 33
Q ss_pred EEEeCCcEEEEECCCCce--eeeecC-------CCCCCCeEEEEEecCCCEEEEEEc-----------CCeEEEEECCCC
Q 003871 653 LSIHEGQIDVYEAPTLNH--TSQLVP-------DKMDLPITYATYSCDGKCIYVSCK-----------SGHVKVFDTSTL 712 (790)
Q Consensus 653 ~~~~dg~I~iwd~~~~~~--~~~~~~-------~~h~~~v~~l~~s~dg~~l~sgs~-----------dg~i~vwd~~~~ 712 (790)
+...||.+++|+...+.. .+++.. ..|...|.++.|.+++.++++-+. +..++|.....+
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~ 256 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDG 256 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETT
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCC
Confidence 345899999999877664 455521 125788999999999999886332 115777774444
Q ss_pred e
Q 003871 713 E 713 (790)
Q Consensus 713 ~ 713 (790)
.
T Consensus 257 ~ 257 (388)
T 1xip_A 257 S 257 (388)
T ss_dssp E
T ss_pred C
Confidence 3
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.24 E-value=1e-09 Score=118.17 Aligned_cols=226 Identities=14% Similarity=-0.036 Sum_probs=150.6
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEe----------CCCcEEEEeCCCCceEEEEcCC-------C
Q 003871 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKTKAKLKGH-------Q 586 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs----------~dg~I~iwd~~~~~~~~~l~~h-------~ 586 (790)
+.|.++|..+++.+.++.....+ .++++||| .++++. .++.|.++|..+++.+..+.-. .
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 79999999999999998755555 89999999 666654 4678999999999988776421 1
Q ss_pred CCEEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeeceeeee----eccCCCCCCCCeEEEEEeCCCCEEEEE-----
Q 003871 587 NRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHS----FQTGLVPETTIVNHIQFHPDQIHLLSI----- 655 (790)
Q Consensus 587 ~~v~~l~~spdg~~l~s~s~--dg~I~vwd~~~~~~~~~~~l~~----~~~~~~~~~~~v~~i~~sp~~~~l~~~----- 655 (790)
.....++++|||++++++.. ++.|.+.|+.+++.....++.. .+.+ .-..++++++|+++++.
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g------~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPAS------PTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE------TTEEEEEETTSSEEEEECCTTC
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCC------CcEEEEEcCCCCEEEEECCCCc
Confidence 23457899999999998874 5789999999976544332210 0000 11124455555544432
Q ss_pred ---------------------------------eCCcEEEEECCCCcee--eeecCC--C------CCCCeEEEEEecCC
Q 003871 656 ---------------------------------HEGQIDVYEAPTLNHT--SQLVPD--K------MDLPITYATYSCDG 692 (790)
Q Consensus 656 ---------------------------------~dg~I~iwd~~~~~~~--~~~~~~--~------h~~~v~~l~~s~dg 692 (790)
..+.+.+.|....... ..+... . .......++++|++
T Consensus 251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 2233444444322210 111000 0 00111236899999
Q ss_pred CEEEEEEc----------CCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCC-EEEEEe-CCCcEEEE
Q 003871 693 KCIYVSCK----------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVI 760 (790)
Q Consensus 693 ~~l~sgs~----------dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~las~s-~Dg~i~iW 760 (790)
+.+++... ++.|.++|..+.+.+..+... .. +.+++|+| ||+ +++++. .++.|.|+
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---------~~--P~gia~sp-Dg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG---------HE--IDSINVSQ-DAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---------EE--ECEEEECC-SSSCEEEEEETTTTEEEEE
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC---------CC--cCeEEEcc-CCCEEEEEEcCCCCeEEEE
Confidence 87776643 357999999999999888631 12 33899999 888 888887 58999999
Q ss_pred ecCCCccccc
Q 003871 761 EPLESEVEWG 770 (790)
Q Consensus 761 ~~~~~~~~w~ 770 (790)
|+.+++..-.
T Consensus 399 D~~t~kvv~t 408 (426)
T 3c75_H 399 DAATGEELRS 408 (426)
T ss_dssp ETTTCCEEEE
T ss_pred ECCCCCEEEE
Confidence 9999986633
No 215
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.22 E-value=1e-08 Score=110.20 Aligned_cols=302 Identities=10% Similarity=-0.016 Sum_probs=183.2
Q ss_pred CCCCcccceeccCCCceEeeeccccCCCCcee-eeeccCCC---C--CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 003871 400 SLPDADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNS---F--GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 473 (790)
Q Consensus 400 g~~la~~~at~s~d~~i~iwd~~~~~~~~~~~-~~~l~~~~---h--~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~ 473 (790)
+..+ +.++.++.|..+|..+ ++.. +..+.... + ...+.+. ...++..+++++.++.+..+|..++
T Consensus 53 ~~~v----~~~~~~g~v~a~d~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG 123 (376)
T 3q7m_A 53 DNVV----YAADRAGLVKALNADD----GKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDG 123 (376)
T ss_dssp TTEE----EEECTTSEEEEEETTT----CCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTC
T ss_pred CCEE----EEEcCCCeEEEEEccC----CceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCC
Confidence 5556 7777889999999863 4332 32321100 0 1223222 2224556888889999999998876
Q ss_pred CccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCe----
Q 003871 474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA---- 548 (790)
Q Consensus 474 ~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v---- 548 (790)
.. +|....+ ..........+..++.++ ++.|..+|..+|+.+..+.......
T Consensus 124 ~~------------~W~~~~~-----------~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~ 180 (376)
T 3q7m_A 124 TV------------AWQTKVA-----------GEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG 180 (376)
T ss_dssp CE------------EEEEECS-----------SCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred CE------------EEEEeCC-----------CceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence 54 3432111 011111223355666666 8999999999999988876432211
Q ss_pred -EEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCCC-------CEEEEEEeC--CCCEEEEEeCCCcEEEEECCCC
Q 003871 549 -TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQN-------RITCLAYSL--SLNVLVSSGADAQLCVWDAVGW 618 (790)
Q Consensus 549 -~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~-------~v~~l~~sp--dg~~l~s~s~dg~I~vwd~~~~ 618 (790)
...... ++.+++++.++.+..+|..+|+.+........ .+..+...| .+..++.++.++.+..+|..+|
T Consensus 181 ~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG 259 (376)
T 3q7m_A 181 ESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG 259 (376)
T ss_dssp CCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC
T ss_pred CCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC
Confidence 122222 34777888899999999999988766643211 000011112 2457788888999999999997
Q ss_pred ceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEE
Q 003871 619 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 697 (790)
Q Consensus 619 ~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 697 (790)
+....... .....+... +..+++ +.++.+..+|..+++.+-...... ...+..... .+..|+.
T Consensus 260 ~~~w~~~~-----------~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~--~~~~l~v 323 (376)
T 3q7m_A 260 QIMWKREL-----------GSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLL-HRLLTSPVL--YNGNLVV 323 (376)
T ss_dssp CEEEEECC-----------CCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTT-TSCCCCCEE--ETTEEEE
T ss_pred cEEeeccC-----------CCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccC-CCcccCCEE--ECCEEEE
Confidence 65433221 133444443 345555 578899999999999876654211 222223333 2567888
Q ss_pred EEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEec
Q 003871 698 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 698 gs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
++.+|.|+++|..+|+.+...... ...+.. .... .+..|+.++.||.|+.|+.
T Consensus 324 ~~~~g~l~~~d~~tG~~~~~~~~~--------~~~~~~-~~~~---~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 324 GDSEGYLHWINVEDGRFVAQQKVD--------SSGFQT-EPVA---ADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECC--------TTCBCS-CCEE---ETTEEEEEBTTSCEEEEEC
T ss_pred EeCCCeEEEEECCCCcEEEEEecC--------CCccee-CCEE---ECCEEEEEeCCCEEEEEeC
Confidence 999999999999999988776531 111210 1111 2457888899999999873
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=1.9e-08 Score=105.84 Aligned_cols=216 Identities=12% Similarity=0.057 Sum_probs=140.6
Q ss_pred eEEEEec--Cc-EEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEc
Q 003871 509 ISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 583 (790)
Q Consensus 509 V~~l~~s--~~-~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~ 583 (790)
..+.+|+ ++ ++++.. ++.|..||..+++.. .+. ....+.+++++|+| ++++ +.+ .|++||..+++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~-~~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEE-ECC-CEEEEECCCCcEEEEee
Confidence 4566777 34 455554 789999999877543 333 34578999999999 5554 444 49999998887543322
Q ss_pred C----CCCCEEEEEEeCCCCEEEEEeC------CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEE
Q 003871 584 G----HQNRITCLAYSLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 653 (790)
Q Consensus 584 ~----h~~~v~~l~~spdg~~l~s~s~------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~ 653 (790)
. ....+++++++|+|+++++... .+.|..+| +++.. .+ ..+. .....++|+|+++.++
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~---~~---~~~~----~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT---KL---FADI----SIPNSICFSPDGTTGY 194 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE---EE---EEEE----SSEEEEEECTTSCEEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE---Ee---eCCC----cccCCeEEcCCCCEEE
Confidence 1 1235889999999997765542 24566666 43321 11 1111 2567899999999877
Q ss_pred EE--eCCcEEEEECC--CC-cee--eeec-CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccC
Q 003871 654 SI--HEGQIDVYEAP--TL-NHT--SQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 725 (790)
Q Consensus 654 ~~--~dg~I~iwd~~--~~-~~~--~~~~-~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~ 725 (790)
.+ .++.|.+||+. ++ ... ..+. .......+..++++++|++.++...++.|.+||. +++....+...
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~---- 269 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP---- 269 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS----
T ss_pred EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC----
Confidence 64 46789999986 55 321 1121 1112345788999999998877777789999998 56666665421
Q ss_pred CCCcccccceEEEEEe-cCCCCEEEEEe
Q 003871 726 PGTISLELYPLVIAAH-PLEPNRIALGL 752 (790)
Q Consensus 726 ~gh~~~~v~~~~v~~s-p~d~~~las~s 752 (790)
...+ .+++|+ | +++.|+.++
T Consensus 270 ----~~~~--~~~af~g~-d~~~L~vt~ 290 (326)
T 2ghs_A 270 ----GKQT--TCPAFIGP-DASRLLVTS 290 (326)
T ss_dssp ----CSBE--EEEEEEST-TSCEEEEEE
T ss_pred ----CCCc--EEEEEecC-CCCEEEEEe
Confidence 2234 499998 7 677665444
No 217
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.19 E-value=1.8e-09 Score=125.06 Aligned_cols=280 Identities=12% Similarity=0.088 Sum_probs=182.0
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCc-eeeeecccCCCCCCeE-EEEecCcEEEEec------
Q 003871 452 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSIS-CFALRGSHLFSAS------ 523 (790)
Q Consensus 452 dg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~V~-~l~~s~~~l~s~s------ 523 (790)
++..+++++.|+.+..+|..+++. +|....+ ... ....+. .....+..+++++
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~------------~W~~~~~~~~~-------~~~~~~~~p~v~~~~v~v~~~~~~~~ 187 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKE------------VWHQNTFEGQK-------GSLTITGAPRVFKGKVIIGNGGAEYG 187 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCE------------EEEEETTTTCC-------SSCBCCSCCEEETTEEEECCBCTTTC
T ss_pred ECCEEEEEcCCCEEEEEECCCCCE------------EeeecCCcCcC-------cCcccccCcEEECCEEEEEecccccC
Confidence 456788888899999999988765 4543222 000 001111 1112344444443
Q ss_pred -CCeEEEEECCCCcEEEEEcCCCCC--------------------------------eEEEEEcCCC-eEEEEeCCC---
Q 003871 524 -GGKISIFSLETFQTLATFANPPPI--------------------------------ATYFILLPQD-LFAFGFDDS--- 566 (790)
Q Consensus 524 -dg~I~vwd~~~~~~~~~~~~~~~~--------------------------------v~~l~~s~~g-~l~sgs~dg--- 566 (790)
++.|..+|..+|+.+.++...... ...++++|++ .++.++.++
T Consensus 188 ~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 188 VRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPW 267 (677)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESS
T ss_pred CCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccc
Confidence 489999999999999887642211 1356788888 888777664
Q ss_pred ----------------cEEEEeCCCCceEEEEcC--CC-------CCEEEEEEeCCC---CEEEEEeCCCcEEEEECCCC
Q 003871 567 ----------------SILVHCPCTKKTKAKLKG--HQ-------NRITCLAYSLSL---NVLVSSGADAQLCVWDAVGW 618 (790)
Q Consensus 567 ----------------~I~iwd~~~~~~~~~l~~--h~-------~~v~~l~~spdg---~~l~s~s~dg~I~vwd~~~~ 618 (790)
.|..+|..+|+.+..++. |. ....-+....+| +.++.++.+|.++++|..+|
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999998877653 21 122223344477 67899999999999999998
Q ss_pred ceeeceeeeeec-------cCC------------C----C---CCCCeEEEEEeCCCCEEEEE-eC--------------
Q 003871 619 KKLCSKFLHSFQ-------TGL------------V----P---ETTIVNHIQFHPDQIHLLSI-HE-------------- 657 (790)
Q Consensus 619 ~~~~~~~l~~~~-------~~~------------~----~---~~~~v~~i~~sp~~~~l~~~-~d-------------- 657 (790)
+.+....+.... .+. . | ....-..++|+|++..+++. .+
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 876543321100 000 0 0 00011257899998888773 21
Q ss_pred -----------------------------CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 658 -----------------------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 658 -----------------------------g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
+.|..||+.+++.+-++.. ..++....+..++..++.++.||.+++||
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 6799999999998777643 34455566778888999999999999999
Q ss_pred CCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCE-EEEEeC----------------CCcEEEEecC
Q 003871 709 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR-IALGLT----------------NGRVHVIEPL 763 (790)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~-las~s~----------------Dg~i~iW~~~ 763 (790)
..+|+.+..+.... | +...-+.|.+ +|+. ++..+. .+.+..|.+.
T Consensus 505 ~~tG~~lw~~~~~~----~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 505 AATGEKLWEAPTGT----G-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp TTTCCEEEEEECSS----C-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred CCCCceeeeeeCCC----C-----cccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 99999998886421 1 1122456667 6764 444322 3678888876
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.19 E-value=1.9e-09 Score=126.02 Aligned_cols=216 Identities=15% Similarity=0.142 Sum_probs=132.3
Q ss_pred eEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC-------------cEEEEeCCCCce--EEEE--cC-CC
Q 003871 526 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-------------SILVHCPCTKKT--KAKL--KG-HQ 586 (790)
Q Consensus 526 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg-------------~I~iwd~~~~~~--~~~l--~~-h~ 586 (790)
.|++||+.+++.+.... +......++|+ || .|+.++.+. .|++|++.++.. ...+ .. |.
T Consensus 156 ~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~ 233 (693)
T 3iuj_A 156 EIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH 233 (693)
T ss_dssp EEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC
T ss_pred EEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC
Confidence 45677777766543211 11112467899 99 777777663 499999987642 2233 33 45
Q ss_pred CCEEEEEEeCCCCEEEEEeC----CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E-e---C
Q 003871 587 NRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-H---E 657 (790)
Q Consensus 587 ~~v~~l~~spdg~~l~s~s~----dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~---d 657 (790)
..+.++.|+|||++|+.... +..|+++|+.++.. .+..+... . ...... ++++|..|+. + . .
T Consensus 234 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~----~~~~l~~~-~---~~~~~~-~~~~g~~l~~~t~~~~~~ 304 (693)
T 3iuj_A 234 HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA----PLLTVQGD-L---DADVSL-VDNKGSTLYLLTNRDAPN 304 (693)
T ss_dssp CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC----CCEEEECS-S---SSCEEE-EEEETTEEEEEECTTCTT
T ss_pred eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC----ceEEEeCC-C---CceEEE-EeccCCEEEEEECCCCCC
Confidence 56788999999998865432 35899999987531 11112222 1 233444 6777776665 4 2 3
Q ss_pred CcEEEEECCCCce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcCC---eEEEEECCCCeEEEEeccccccCCCCcccc
Q 003871 658 GQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLE 732 (790)
Q Consensus 658 g~I~iwd~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg---~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~ 732 (790)
+.|..+|+.++.. ...+.. |...+. .|++++++|+....++ .|++|++.++.. ..+... + .+.
T Consensus 305 ~~l~~~d~~~~~~~~~~~l~~--~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~p-----~--~~~ 372 (693)
T 3iuj_A 305 RRLVTVDAANPGPAHWRDLIP--ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVALP-----G--LGS 372 (693)
T ss_dssp CEEEEEETTSCCGGGCEEEEC--CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECCS-----S--SSE
T ss_pred CEEEEEeCCCCCccccEEEec--CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeecC-----C--Cce
Confidence 5799999987654 244544 233444 8999999887666544 789999986543 333211 1 223
Q ss_pred cceEEEEEecCCCCEEEEEeCC----CcEEEEecCCCcc
Q 003871 733 LYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESEV 767 (790)
Q Consensus 733 v~~~~v~~sp~d~~~las~s~D----g~i~iW~~~~~~~ 767 (790)
+. .++++| +++.++....+ ++|+.|++.+++.
T Consensus 373 ~~--~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 373 VS--GFNGKH-DDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EE--ECCCCT-TCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EE--eeecCC-CCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 33 677788 55555444333 7899999987753
No 219
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.19 E-value=1.5e-08 Score=108.85 Aligned_cols=282 Identities=9% Similarity=0.008 Sum_probs=173.9
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCe-EEEEecCcEEEEec-CCeEEEE
Q 003871 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALRGSHLFSAS-GGKISIF 530 (790)
Q Consensus 453 g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V-~~l~~s~~~l~s~s-dg~I~vw 530 (790)
+..+++++.++.+..+|..+++. +|....+..... .......+ ..+...+..+++++ ++.|..+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~------------~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~ 118 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKE------------IWSVSLAEKDGW--FSKEPALLSGGVTVSGGHVYIGSEKAQVYAL 118 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE------------EEEEECCC---C--CSCCCCCEEEEEEEETTEEEEEETTSEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCce------------eeeecCcccccc--ccccCcccccCceEeCCEEEEEcCCCEEEEE
Confidence 55688888889999999877654 343221110000 00002223 23334466666666 8999999
Q ss_pred ECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCCCCE-----EEEEEeCCCCEEEEEe
Q 003871 531 SLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-----TCLAYSLSLNVLVSSG 605 (790)
Q Consensus 531 d~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v-----~~l~~spdg~~l~s~s 605 (790)
|..+|+.+..+............. ++.+++++.++.|+.+|..+|+.+.......... ...... +..++.++
T Consensus 119 d~~tG~~~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~ 195 (376)
T 3q7m_A 119 NTSDGTVAWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGG 195 (376)
T ss_dssp ETTTCCEEEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECC
T ss_pred ECCCCCEEEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEc
Confidence 999999988776443322222222 3478888899999999999999887765432111 122222 44677888
Q ss_pred CCCcEEEEECCCCceeeceeeeeeccCCCCCCCC---e-EEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCC
Q 003871 606 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI---V-NHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMD 680 (790)
Q Consensus 606 ~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~---v-~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~ 680 (790)
.++.+..+|..+|+........ .+.+... ... + ...... + ..+++ +.++.+..+|..+++.+-....
T Consensus 196 ~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~-~~~~~~~~~~p~~~-~-~~v~~~~~~g~l~~~d~~tG~~~w~~~~---- 267 (376)
T 3q7m_A 196 DNGRVSAVLMEQGQMIWQQRIS-QATGSTE-IDRLSDVDTTPVVV-N-GVVFALAYNGNLTALDLRSGQIMWKREL---- 267 (376)
T ss_dssp TTTEEEEEETTTCCEEEEEECC-C------------CCCCCCEEE-T-TEEEEECTTSCEEEEETTTCCEEEEECC----
T ss_pred CCCEEEEEECCCCcEEEEEecc-cCCCCcc-cccccccCCCcEEE-C-CEEEEEecCcEEEEEECCCCcEEeeccC----
Confidence 8999999999998765433322 1100000 000 0 011111 3 34555 5789999999999998766532
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEE
Q 003871 681 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 760 (790)
Q Consensus 681 ~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW 760 (790)
.....+.. ++..++.++.++.|+.+|..+|+.+...... + ..... .... .+..|+.++.+|.|+++
T Consensus 268 ~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~-----~--~~~~~--~~~~---~~~~l~v~~~~g~l~~~ 333 (376)
T 3q7m_A 268 GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL-----L--HRLLT--SPVL---YNGNLVVGDSEGYLHWI 333 (376)
T ss_dssp CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT-----T--TSCCC--CCEE---ETTEEEEECTTSEEEEE
T ss_pred CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc-----C--CCccc--CCEE---ECCEEEEEeCCCeEEEE
Confidence 23444443 4677888889999999999999987665411 1 11111 1222 24678888899999999
Q ss_pred ecCCCccccccCC
Q 003871 761 EPLESEVEWGKLP 773 (790)
Q Consensus 761 ~~~~~~~~w~~~~ 773 (790)
|..+|+..|....
T Consensus 334 d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 334 NVEDGRFVAQQKV 346 (376)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECCCCcEEEEEec
Confidence 9999999987543
No 220
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.16 E-value=7.2e-09 Score=112.55 Aligned_cols=239 Identities=10% Similarity=-0.018 Sum_probs=154.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEE
Q 003871 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 519 (790)
Q Consensus 442 ~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l 519 (790)
.....++|+++|+.+++...++.|++||..++.. ..... . ..... ++|+ ++.+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~---------------------~~~~~--~-~~~~~-ia~~~~g~~l 185 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV---------------------TTVHP--G-FKGGK-PAVTKDKQRV 185 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE---------------------EEEEE--T-CCBCB-CEECTTSSEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE---------------------EEeec--c-CCCCc-eeEecCCCcE
Confidence 4678999999999666666678999998765322 11111 1 22223 7788 7777
Q ss_pred EEec-CC--eEEEEECCCCcEEEEE----cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEE----EcCCCC
Q 003871 520 FSAS-GG--KISIFSLETFQTLATF----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK----LKGHQN 587 (790)
Q Consensus 520 ~s~s-dg--~I~vwd~~~~~~~~~~----~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~----l~~h~~ 587 (790)
+++. ++ .|.+++..++.....+ ......+.+++++|++ .|+++..++.|+.||..++..... ..++..
T Consensus 186 ~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~ 265 (409)
T 3hrp_A 186 YSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLG 265 (409)
T ss_dssp EEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCC
T ss_pred EEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCC
Confidence 7776 44 8999998766544444 2244567889999954 555577788999999987754322 222222
Q ss_pred CE--EEEEEeCC-CCEEEEEeCCCcEEEEECCCCceeeceeeeee-ccCCCC------CCCCeEEEEEeCCCCEEEE-E-
Q 003871 588 RI--TCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-QTGLVP------ETTIVNHIQFHPDQIHLLS-I- 655 (790)
Q Consensus 588 ~v--~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~-~~~~~~------~~~~v~~i~~sp~~~~l~~-~- 655 (790)
.- +.++|+|+ +.++++-..++.|+.||...... ...... ..+... .-.....++++|+|.++++ .
T Consensus 266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~---~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~ 342 (409)
T 3hrp_A 266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE---WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF 342 (409)
T ss_dssp CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE---EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT
T ss_pred CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE---EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC
Confidence 22 39999995 66666666788999999875210 001100 000000 0035789999999996666 4
Q ss_pred eCCcEEEEECCCCceeeeecCCC-------------CCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 003871 656 HEGQIDVYEAPTLNHTSQLVPDK-------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 656 ~dg~I~iwd~~~~~~~~~~~~~~-------------h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~ 709 (790)
.++.|+.||+.++... ++.+.. .-.....++++++|.++++-..++.|+.+++
T Consensus 343 ~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 343 KGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 5678999998777643 332210 0245889999999888888888888888765
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.16 E-value=3.3e-08 Score=103.95 Aligned_cols=222 Identities=10% Similarity=-0.047 Sum_probs=144.1
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEE
Q 003871 444 VVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 520 (790)
Q Consensus 444 V~~l~~spdg~~l~s~~-~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~ 520 (790)
..+.+|+|++..++..+ .++.|..|+..++.. ... .....+.+++++ |++++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~---------------------~~~----~~~~~v~~i~~~~dg~l~v 105 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRK---------------------TVH----ALPFMGSALAKISDSKQLI 105 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE---------------------EEE----ECSSCEEEEEEEETTEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE---------------------EEE----ECCCcceEEEEeCCCeEEE
Confidence 45778999866555544 578898888665321 111 124578899998 55555
Q ss_pred EecCCeEEEEECCCCcEEEEEcCC----CCCeEEEEEcCCC-eEEEEeC------CCcEEEEeCCCCceEEEEcCCCCCE
Q 003871 521 SASGGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFD------DSSILVHCPCTKKTKAKLKGHQNRI 589 (790)
Q Consensus 521 s~sdg~I~vwd~~~~~~~~~~~~~----~~~v~~l~~s~~g-~l~sgs~------dg~I~iwd~~~~~~~~~l~~h~~~v 589 (790)
+ .++.|.+||..+++........ ...+.+++++|+| .+++... .+.|+.++ +++... +..+....
T Consensus 106 ~-~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~ 181 (326)
T 2ghs_A 106 A-SDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIP 181 (326)
T ss_dssp E-ETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSE
T ss_pred E-ECCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCccc
Confidence 4 4455999999888754332211 2357899999999 5544432 24666666 455432 32333457
Q ss_pred EEEEEeCCCCEEEEE-eCCCcEEEEECC--CC-ceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEE
Q 003871 590 TCLAYSLSLNVLVSS-GADAQLCVWDAV--GW-KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 664 (790)
Q Consensus 590 ~~l~~spdg~~l~s~-s~dg~I~vwd~~--~~-~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd 664 (790)
+.++|+||++.++.+ +.++.|.+||+. ++ .......+..+.. .. ..+..++++++|.+.++. .++.|.+||
T Consensus 182 ~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~-~~---~~p~gi~~d~~G~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 182 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG-IK---GGMDGSVCDAEGHIWNARWGEGAVDRYD 257 (326)
T ss_dssp EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT-SS---SEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred CCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCC-CC---CCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence 899999999877555 457899999986 55 3221122221211 11 356789999999877765 567899999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEe-cCCCEEEEEEcC
Q 003871 665 APTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKS 701 (790)
Q Consensus 665 ~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~sgs~d 701 (790)
. +++.+..+.. +...+++++|+ ++++.|+.++..
T Consensus 258 ~-~g~~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 258 T-DGNHIARYEV--PGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp T-TCCEEEEEEC--SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred C-CCCEEEEEEC--CCCCcEEEEEecCCCCEEEEEecC
Confidence 8 5777777654 24569999998 898877655543
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.15 E-value=7.9e-09 Score=107.61 Aligned_cols=229 Identities=9% Similarity=-0.014 Sum_probs=150.4
Q ss_pred CCCceEEEEEcCCCCEEEE-EeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--C
Q 003871 440 FGGRVVRLIYSHSGDFLVA-LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (790)
Q Consensus 440 h~~~V~~l~~spdg~~l~s-~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~ 516 (790)
.........|+|+|+.|+. ...++.|..|+... . ..... .+...+..++++ |
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~---------------------~~~~~---~~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T---------------------VDVLL---DATAFTNGNAVDAQQ 97 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C---------------------EEEEE---ESCSCEEEEEECTTS
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C---------------------EEEEe---CCCCccceeeECCCC
Confidence 3456788999999995544 44578898887532 1 11111 245568889999 6
Q ss_pred cEEEEec-CCeEEEEECCCCcEEEEEc---C-CCCCeEEEEEcCCC-eEEE----EeC-------------CCcEEEEeC
Q 003871 517 SHLFSAS-GGKISIFSLETFQTLATFA---N-PPPIATYFILLPQD-LFAF----GFD-------------DSSILVHCP 573 (790)
Q Consensus 517 ~~l~s~s-dg~I~vwd~~~~~~~~~~~---~-~~~~v~~l~~s~~g-~l~s----gs~-------------dg~I~iwd~ 573 (790)
+++++.. ++.|..|+.. ++...... + ....+..++++|+| ..++ |.. .+.|+.+|.
T Consensus 98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 6555544 5789999986 55332221 1 12346789999999 6665 332 256888888
Q ss_pred CCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCC------CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeC
Q 003871 574 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 647 (790)
Q Consensus 574 ~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp 647 (790)
.+++..... .....+.++|+||++.|+.+... +.|.+||+..+.......+... .. +....+++++
T Consensus 177 ~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~---~~---~~pdgi~~d~ 248 (305)
T 3dr2_A 177 DGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV---PD---GLPDGFCVDR 248 (305)
T ss_dssp SSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC---SS---SCCCSEEECT
T ss_pred CCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC---CC---CCCCeEEECC
Confidence 777654333 34567899999999988777665 6899999876432111122111 11 3456789999
Q ss_pred CCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 648 DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 648 ~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
+|++.++. .+.|.+||. +++.+..+... ..+.+++|+++++.|+.++.++ ++.++
T Consensus 249 ~G~lwv~~-~~gv~~~~~-~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 249 GGWLWSSS-GTGVCVFDS-DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp TSCEEECC-SSEEEEECT-TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CCCEEEec-CCcEEEECC-CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 99955444 445999998 57777777542 3588999999999888887654 44333
No 223
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.15 E-value=4.6e-09 Score=110.46 Aligned_cols=291 Identities=12% Similarity=0.085 Sum_probs=183.8
Q ss_pred eeccCCCceEeeeccccCCCCcee-eeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccccccccc
Q 003871 408 VCAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES 486 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~~~~~~~-~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~ 486 (790)
..++.++.+..|| .. +... ... .+...+.++...++|. +..++.+ +..+|. ++..
T Consensus 34 ~v~t~~~~l~~~d-~~----g~~~~~~~----~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~----------- 89 (330)
T 3hxj_A 34 YLGSSNKNLYAIN-TD----GSVKWFFK----SGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE----------- 89 (330)
T ss_dssp ECSSTTTTTEEEC-TT----SCEEESSC----GGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG-----------
T ss_pred EEEcCCCEEEEEC-CC----CcEEEEEe----cCCCcccceEEecCCc-EEEecCc--EEEECC-CCcE-----------
Confidence 6677788899999 52 3332 211 1234567777777776 5555544 777764 2222
Q ss_pred ccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCC
Q 003871 487 QLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDD 565 (790)
Q Consensus 487 ~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~d 565 (790)
+|..... ........+.+..++.++ ++.|..+|.. ++....+..+...+.++...+++.+..|+.+
T Consensus 90 -~~~~~~~-----------~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~ 156 (330)
T 3hxj_A 90 -KWRFDTK-----------KAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSND 156 (330)
T ss_dssp -GGGSCC----------------CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTT
T ss_pred -EEEEECC-----------CCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCC
Confidence 2332211 111122223355666666 8999999998 8877777655555667777777766778888
Q ss_pred CcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEE
Q 003871 566 SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 645 (790)
Q Consensus 566 g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~ 645 (790)
+.|..+|.. ++....+......+.++...+++...+ ++ +.+..+| .+++.... ..... ..+.++..
T Consensus 157 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~-----~~~~~----~~~~~~~~ 222 (330)
T 3hxj_A 157 NYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWN-----FYAGY----WTVTRPAI 222 (330)
T ss_dssp SEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEE-----ECCSS----CCCSCCEE
T ss_pred CEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEE-----EccCC----cceeceEE
Confidence 999999998 877766665556677788878887554 44 8899999 55443221 11111 35778888
Q ss_pred eCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccC
Q 003871 646 HPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 725 (790)
Q Consensus 646 sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~ 725 (790)
.++|...+.+.++.+..+|. +++.+..+... ...+..+.+.+++ .|..++.+|.|+.+|. +++.+..+...
T Consensus 223 ~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~---- 293 (330)
T 3hxj_A 223 SEDGTIYVTSLDGHLYAINP-DGTEKWRFKTG--KRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG---- 293 (330)
T ss_dssp CTTSCEEEEETTTEEEEECT-TSCEEEEEECS--SCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS----
T ss_pred CCCCeEEEEcCCCeEEEECC-CCCEeEEeeCC--CCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC----
Confidence 99887777677888999985 56666555432 2334445565565 4667788889999996 67766655421
Q ss_pred CCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 726 PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 726 ~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
...+. ++...+ ++. |..++.+|.+++......+
T Consensus 294 ----~~~~~--~~~~d~-~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 294 ----SWIIA--TPVIDE-NGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp ----SCCCS--CCEECT-TCC-EEEECTTSCEEEEEC----
T ss_pred ----Ccccc--ceEEcC-CCE-EEEEcCCCeEEEEeccccc
Confidence 22344 556656 555 5568899999998776543
No 224
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.14 E-value=4.3e-10 Score=119.45 Aligned_cols=177 Identities=12% Similarity=0.063 Sum_probs=127.4
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-----------eEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 003871 547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKK-----------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 614 (790)
Q Consensus 547 ~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~-----------~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd 614 (790)
.++.+++++.. .+++|+.++ +.+|++.+.. ..... .+.. |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 68899999999 999999875 5569865332 11222 3566 999999 89999999 789999999
Q ss_pred CCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCC
Q 003871 615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK 693 (790)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 693 (790)
+.+... ..... .+. ..+.++.+.+.. +++ ..||.+.+||+.++.... . ...|++++|||+|
T Consensus 113 v~sl~~--~~~~~----~~~---~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-~-----~~~Vs~v~WSpkG- 174 (388)
T 1xip_A 113 LEELSE--FRTVT----SFE---KPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-L-----AQNVTSFDVTNSQ- 174 (388)
T ss_dssp SSSTTC--EEEEE----ECS---SCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-E-----EESEEEEEECSSE-
T ss_pred chhhhc--cCccc----eee---cceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-c-----cCCceEEEEcCCc-
Confidence 987432 11222 222 467787777653 555 699999999999877643 2 4579999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeE--EEEeccccccCC--CCcccccceEEEEEecCCCCEEEEEe
Q 003871 694 CIYVSCKSGHVKVFDTSTLEL--RCQINLTAYAQP--GTISLELYPLVIAAHPLEPNRIALGL 752 (790)
Q Consensus 694 ~l~sgs~dg~i~vwd~~~~~~--~~~~~~~~~~~~--gh~~~~v~~~~v~~sp~d~~~las~s 752 (790)
++.|..||++++|+..+++. ..++........ +| ...++++.|.+ ++.++++-+
T Consensus 175 -~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~---~~~V~sI~wl~-~~~flv~y~ 232 (388)
T 1xip_A 175 -LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE---EYSPLSVTILS-PQDFLAVFG 232 (388)
T ss_dssp -EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT---TSEEEEEEESS-SSEEEEEEE
T ss_pred -eEEEEcCCcEEEEcCCCccccccceecCCcccccccCC---CeeEEEEEEec-CCeEEEEEc
Confidence 67899999999999988885 555532211110 22 34466999999 788887644
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.14 E-value=2.8e-09 Score=113.13 Aligned_cols=269 Identities=8% Similarity=-0.051 Sum_probs=169.2
Q ss_pred CceEEEEEcCCCCEEEEEeC--CCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--Cc
Q 003871 442 GRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 517 (790)
Q Consensus 442 ~~V~~l~~spdg~~l~s~~~--dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~ 517 (790)
..+..++++|+|+.+++... ++.++||.+.++.. . .+ | -|. .....+-..+.+++++ ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-----~-~~-p-~~~---------~~~~~~~~~p~gv~~d~~g~ 79 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-----I-PF-P-PQS---------GNAIITFDTVLGIKSDGNGI 79 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-----E-ES-C-CCC---------SSCCCCCSCEEEEEECSSSE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-----e-cC-C-Ccc---------cCcccceeEeeEEEEcCCCc
Confidence 67899999999998777643 34356665542211 0 00 0 000 0011356789999999 44
Q ss_pred EEEEec------CCeEEEEECCCCcEEEEEcCC------CCCeEEEEEcCCC--eEEEEe---CCCcEEEEeCCCCceEE
Q 003871 518 HLFSAS------GGKISIFSLETFQTLATFANP------PPIATYFILLPQD--LFAFGF---DDSSILVHCPCTKKTKA 580 (790)
Q Consensus 518 ~l~s~s------dg~I~vwd~~~~~~~~~~~~~------~~~v~~l~~s~~g--~l~sgs---~dg~I~iwd~~~~~~~~ 580 (790)
++++-. ++.|.+||+.+++.+..+..+ ...+..+++++++ .+++.+ .++.|.+||+.+++...
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r 159 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR 159 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence 444332 379999999999877776532 2346889999865 445544 57899999999888777
Q ss_pred EEcCCCCCEE-EEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eC-
Q 003871 581 KLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE- 657 (790)
Q Consensus 581 ~l~~h~~~v~-~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d- 657 (790)
.+.+|..... ...+.++|..+.+.+.++.++.|. ..+..++|+|+|+.|+++ .+
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-----------------------~~~~gia~s~dg~~ly~~~~~~ 216 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-----------------------LGVNGIVLDAENEWLYLSPMHS 216 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-----------------------CCEEEEEECTTSCEEEEEESSC
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceecee-----------------------cccceeEeccCCCEEEEEeCCC
Confidence 7765532111 134556777777777777664432 135789999999988885 33
Q ss_pred CcEEEEECC---CCc-----eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCc
Q 003871 658 GQIDVYEAP---TLN-----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 729 (790)
Q Consensus 658 g~I~iwd~~---~~~-----~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~ 729 (790)
+.++.++.. .+. ....+....+......++++++|+++++...++.|.+||..+|+.......
T Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~--------- 287 (343)
T 2qe8_A 217 TSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD--------- 287 (343)
T ss_dssp SEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC---------
T ss_pred CeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC---------
Confidence 356555532 111 000010001133566799999999999998999999999866765433221
Q ss_pred ccccceEEEEEecCCCCEEEEEeCCCcEEEE
Q 003871 730 SLELYPLVIAAHPLEPNRIALGLTNGRVHVI 760 (790)
Q Consensus 730 ~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW 760 (790)
....++.+++|.| ++.++++.+..+.+.+|
T Consensus 288 ~~~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 288 EKLSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp GGGSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred CceecCCeeEECC-CCcEEEEeCcccccccc
Confidence 1122356999999 78888887765555444
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.12 E-value=8.8e-09 Score=119.54 Aligned_cols=246 Identities=13% Similarity=0.127 Sum_probs=161.3
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCc-eeeeecccCCCCCCeE-EEEecCcEEEEec-------
Q 003871 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSIS-CFALRGSHLFSAS------- 523 (790)
Q Consensus 453 g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~V~-~l~~s~~~l~s~s------- 523 (790)
+..+++++.|+.+..+|..+++. +|..... .. .....+. +..+.+..+++++
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~------------~W~~~~~~~~-------~~~~~~~~sP~v~~g~v~vg~~~~~~~~ 181 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQR------------AWSVDTRADH-------KRSYTITGAPRVVNGKVVIGNGGAEFGV 181 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE------------EEEEECCSCT-------TSCCBCCSCCEEETTEEEECCBCTTTCC
T ss_pred CCEEEEEccCCEEEEEECCCCCE------------eeeecCcCCC-------CCCccccCCcEEECCEEEEEeCCCccCC
Confidence 55788888999999999988765 4543221 00 0000111 1112244444443
Q ss_pred CCeEEEEECCCCcEEEEEcCCC--C-----------------------------CeEEEEEcCCC-eEEEEeCCCc----
Q 003871 524 GGKISIFSLETFQTLATFANPP--P-----------------------------IATYFILLPQD-LFAFGFDDSS---- 567 (790)
Q Consensus 524 dg~I~vwd~~~~~~~~~~~~~~--~-----------------------------~v~~l~~s~~g-~l~sgs~dg~---- 567 (790)
+|.|..||..+|+.+.++.... . ....++++|++ .++.++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~ 261 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP 261 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence 4799999999999998875210 0 01257888888 8888887763
Q ss_pred ---------------EEEEeCCCCceEEEEcC--CC-------CCEEEEEEeCCCC---EEEEEeCCCcEEEEECCCCce
Q 003871 568 ---------------ILVHCPCTKKTKAKLKG--HQ-------NRITCLAYSLSLN---VLVSSGADAQLCVWDAVGWKK 620 (790)
Q Consensus 568 ---------------I~iwd~~~~~~~~~l~~--h~-------~~v~~l~~spdg~---~l~s~s~dg~I~vwd~~~~~~ 620 (790)
|..+|..+|+.+..++. |. .++.......+|+ .++.++.+|.++++|.++|+.
T Consensus 262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 99999999999877754 21 1222223333665 788999999999999999987
Q ss_pred eeceeeeee-----------------------ccCCC----C---CCCCeEEEEEeCCCCEEEEE-e-------------
Q 003871 621 LCSKFLHSF-----------------------QTGLV----P---ETTIVNHIQFHPDQIHLLSI-H------------- 656 (790)
Q Consensus 621 ~~~~~l~~~-----------------------~~~~~----~---~~~~v~~i~~sp~~~~l~~~-~------------- 656 (790)
+....+... +.+.. + ....-..++|+|+...+++. .
T Consensus 342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~ 421 (689)
T 1yiq_A 342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP 421 (689)
T ss_dssp EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence 632221100 00000 0 00012237899988877763 1
Q ss_pred --------------------------------CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE
Q 003871 657 --------------------------------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 704 (790)
Q Consensus 657 --------------------------------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i 704 (790)
+|.|+.||+.+++.+-++.. ..+.....++..+.++++|+.||.+
T Consensus 422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagglvf~gt~dg~l 498 (689)
T 1yiq_A 422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY---VTIFNGGTLSTAGNLVFEGSADGRV 498 (689)
T ss_dssp CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC---CCCccCccceECCCEEEEECCCCcE
Confidence 36799999999998777643 2334444677788899999999999
Q ss_pred EEEECCCCeEEEEecc
Q 003871 705 KVFDTSTLELRCQINL 720 (790)
Q Consensus 705 ~vwd~~~~~~~~~~~~ 720 (790)
+.||.++|+++..+..
T Consensus 499 ~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 499 IAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEETTTCCEEEEEEC
T ss_pred EEEECCCCccceeeeC
Confidence 9999999999988763
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.11 E-value=2e-08 Score=104.61 Aligned_cols=224 Identities=12% Similarity=-0.019 Sum_probs=146.9
Q ss_pred CCCCeEEEEec--Cc-EEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE
Q 003871 505 PKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 579 (790)
Q Consensus 505 ~~~~V~~l~~s--~~-~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~ 579 (790)
.........|+ ++ ++++.. ++.|..|+. +++ ...+..+...+..++++++| ++++...++.|..|+.. ++..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH 119 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE
Confidence 44566788888 66 455555 789999998 454 34555566778999999999 66655566789999986 6533
Q ss_pred EEEc---C-CCCCEEEEEEeCCCCEEEE----EeC-------------CCcEEEEECCCCceeeceeeeeeccCCCCCCC
Q 003871 580 AKLK---G-HQNRITCLAYSLSLNVLVS----SGA-------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 638 (790)
Q Consensus 580 ~~l~---~-h~~~v~~l~~spdg~~l~s----~s~-------------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~ 638 (790)
.... + ....+++++++|+|++.++ |.. .+.|..||..+++... +. +. .
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~------~~-~~----~ 188 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR------MA-DL----D 188 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE------EE-EE----S
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE------Ee-cC----C
Confidence 2221 1 1134678999999998886 332 2467778876654321 11 11 3
Q ss_pred CeEEEEEeCCCCEEEEE-eC------CcEEEEECCCCce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 003871 639 IVNHIQFHPDQIHLLSI-HE------GQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 639 ~v~~i~~sp~~~~l~~~-~d------g~I~iwd~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~ 709 (790)
....++|+||++.|+++ .. +.|++||+..+.. ...+.. ........++++++|++.++ +.+ .|.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~ 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-VPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-CSSSCCCSEEECTTSCEEEC-CSS-EEEEECT
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-CCCCCCCeEEECCCCCEEEe-cCC-cEEEECC
Confidence 56789999999988775 33 6899999875431 112211 11344567899999995444 444 5999998
Q ss_pred CCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEE
Q 003871 710 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVH 758 (790)
Q Consensus 710 ~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~ 758 (790)
.++....+... . .+. .++|+| +++.|..++.++..+
T Consensus 266 -~g~~~~~~~~~--------~-~~~--~~~f~~-d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 266 -DGQLLGHIPTP--------G-TAS--NCTFDQ-AQQRLFITGGPCLWM 301 (305)
T ss_dssp -TSCEEEEEECS--------S-CCC--EEEECT-TSCEEEEEETTEEEE
T ss_pred -CCCEEEEEECC--------C-cee--EEEEeC-CCCEEEEEcCCeEEE
Confidence 46666665421 2 344 889998 788888777764333
No 228
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.10 E-value=2.5e-09 Score=113.33 Aligned_cols=265 Identities=8% Similarity=-0.021 Sum_probs=168.5
Q ss_pred eeccCCC----ceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEe----------CCCcEEEEecCCC
Q 003871 408 VCAKSLE----KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTATHKLWKWQSN 473 (790)
Q Consensus 408 at~s~d~----~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~----------~dg~i~vw~~~~~ 473 (790)
++...++ +|.+.|... .....++.. +. .+ .++++|||++++++. .++.|.+||..+.
T Consensus 36 V~~~~~~~~~d~vsvID~~t---~~v~~~i~v---G~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~ 106 (368)
T 1mda_H 36 ITLPAYFAGTTENWVSCAGC---GVTLGHSLG---AF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF 106 (368)
T ss_dssp EEECTTTCSSEEEEEEETTT---TEEEEEEEE---CT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred EECCccCCccceEEEEECCC---CeEEEEEeC---CC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence 5555555 777999874 333444443 22 34 799999999999887 3678999988775
Q ss_pred CccccccccccccccccCCCceeeeecccC--C---CCCCeEEEEec--CcEEEEec---CCeEEE--EECCCCcEEEEE
Q 003871 474 KQSLEEENVNMESQLYQPSSKLVMTNDIAA--D---PKDSISCFALR--GSHLFSAS---GGKISI--FSLETFQTLATF 541 (790)
Q Consensus 474 ~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~--~---~~~~V~~l~~s--~~~l~s~s---dg~I~v--wd~~~~~~~~~~ 541 (790)
.. ....... . .......++++ |++++++. +..+.+ +|..+ +.++
T Consensus 107 ~v---------------------v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i 162 (368)
T 1mda_H 107 LP---------------------IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLT 162 (368)
T ss_dssp CE---------------------EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEE
T ss_pred CE---------------------EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEE
Confidence 44 1111000 0 01234568888 77777765 357888 99876 4555
Q ss_pred cCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-----CceEE----EEcCCCCCEEEEEEeCCCCEEEEEeCCCcE
Q 003871 542 ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-----KKTKA----KLKGHQNRITCLAYSLSLNVLVSSGADAQL 610 (790)
Q Consensus 542 ~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~-----~~~~~----~l~~h~~~v~~l~~spdg~~l~s~s~dg~I 610 (790)
..... ..+.|+| .+++.+.||.+.+.|+.+ ++... .+.....+. + ++++..++..+. +.+
T Consensus 163 ~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V 233 (368)
T 1mda_H 163 KSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSI 233 (368)
T ss_dssp ECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCC
T ss_pred ECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEE
Confidence 32111 2234566 556667788888888876 43321 111122333 3 677777776677 999
Q ss_pred EEEECCCCceeeceeeeeec------cCCCCCCCCeEEEEEeCCCCEEEEE-e-C--------CcEEEEECCCCceeeee
Q 003871 611 CVWDAVGWKKLCSKFLHSFQ------TGLVPETTIVNHIQFHPDQIHLLSI-H-E--------GQIDVYEAPTLNHTSQL 674 (790)
Q Consensus 611 ~vwd~~~~~~~~~~~l~~~~------~~~~~~~~~v~~i~~sp~~~~l~~~-~-d--------g~I~iwd~~~~~~~~~~ 674 (790)
.+.|..++.......+. +. .+..+ .....++++|+++.++++ . . +.+.++|+.+++.+..+
T Consensus 234 ~viD~~~~~~~v~~~~~-~~~~~~~~~~~~p--~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i 310 (368)
T 1mda_H 234 LQGDIPAAGATMKAAID-GNESGRKADNFRS--AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310 (368)
T ss_dssp EEEECCSSCCEEECCCC-SSCTHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC
T ss_pred EEEECCCCcceEEEEEE-ecccccccccccc--CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEE
Confidence 99999753211111111 10 01000 122237899999988874 3 2 35779999999999888
Q ss_pred cCCCCCCCeEEEEEecCCCE-EEEEE-cCCeEEEEECCCCeEEEEecc
Q 003871 675 VPDKMDLPITYATYSCDGKC-IYVSC-KSGHVKVFDTSTLELRCQINL 720 (790)
Q Consensus 675 ~~~~h~~~v~~l~~s~dg~~-l~sgs-~dg~i~vwd~~~~~~~~~~~~ 720 (790)
.. ......++|+|||++ +++.. .++.|.++|+.+++.+..+..
T Consensus 311 ~v---g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 311 SN---GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EE---EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EC---CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence 65 346899999999984 55666 589999999999999988763
No 229
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.09 E-value=4.1e-09 Score=123.14 Aligned_cols=254 Identities=10% Similarity=0.033 Sum_probs=156.4
Q ss_pred CCCCCCCCCCCCCCCCCCCcccce-eccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCC
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA 463 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~a-t~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg 463 (790)
..++|| |||+++|...- .|+.+.+|++||+. ++......++ ......++|+ ||+.|+.++.+.
T Consensus 132 ~~~~~S-------pDg~~lAy~~~~~G~~~~~i~v~dl~----tg~~~~~~~~----~~k~~~~~Ws-Dg~~l~y~~~~~ 195 (693)
T 3iuj_A 132 DQLSFS-------RDGRILAYSLSLAGSDWREIHLMDVE----SKQPLETPLK----DVKFSGISWL-GNEGFFYSSYDK 195 (693)
T ss_dssp EEEEEC-------TTSSEEEEEEECSSCCEEEEEEEETT----TCSEEEEEEE----EEESCCCEEE-TTTEEEEEESSC
T ss_pred EEEEEC-------CCCCEEEEEEecCCCceEEEEEEECC----CCCCCccccC----CceeccEEEe-CCCEEEEEEecC
Confidence 778899 99999922111 34445789999997 4554443321 1123577899 999999888763
Q ss_pred cEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEecCCeEEEEECCCCcE--EEEE
Q 003871 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQT--LATF 541 (790)
Q Consensus 464 ~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~sdg~I~vwd~~~~~~--~~~~ 541 (790)
. .... . -.......|++|++.++.. ...+
T Consensus 196 ~------~~~~---------------------~----------------------~~~~~~~~v~~~~lgt~~~~~~~v~ 226 (693)
T 3iuj_A 196 P------DGSE---------------------L----------------------SARTDQHKVYFHRLGTAQEDDRLVF 226 (693)
T ss_dssp C------C--------------------------------------------------CCCCEEEEEETTSCGGGCEEEE
T ss_pred c------cccc---------------------c----------------------cccCCCcEEEEEECCCCcccceEEE
Confidence 2 0000 0 0000123567777766532 2233
Q ss_pred c--C-CCCCeEEEEEcCCC-eEE-EEeC---CCcEEEEeCCCCc-eEEEEcCCCCCEEEEEEeCCCCEEEEEe-CC---C
Q 003871 542 A--N-PPPIATYFILLPQD-LFA-FGFD---DSSILVHCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSG-AD---A 608 (790)
Q Consensus 542 ~--~-~~~~v~~l~~s~~g-~l~-sgs~---dg~I~iwd~~~~~-~~~~l~~h~~~v~~l~~spdg~~l~s~s-~d---g 608 (790)
. . +...+..+.|+||| +++ +.+. ++.|+++|+.++. ....+..+....... ++++|..|+..+ .+ +
T Consensus 227 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~ 305 (693)
T 3iuj_A 227 GAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNR 305 (693)
T ss_dssp SCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTC
T ss_pred ecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCC
Confidence 3 2 33456789999999 554 4332 2589999998764 345566666666555 667666665444 33 5
Q ss_pred cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCC--cEEEEECCCCceeeeecCCCCCCCeE
Q 003871 609 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEG--QIDVYEAPTLNHTSQLVPDKMDLPIT 684 (790)
Q Consensus 609 ~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg--~I~iwd~~~~~~~~~~~~~~h~~~v~ 684 (790)
.|..+|+.++.... .+.+.. +. ..+. .|+++++.|+.. .++ .|++||+..+ ....+... ....+.
T Consensus 306 ~l~~~d~~~~~~~~---~~~l~~-~~---~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p-~~~~~~ 374 (693)
T 3iuj_A 306 RLVTVDAANPGPAH---WRDLIP-ER---QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALP-GLGSVS 374 (693)
T ss_dssp EEEEEETTSCCGGG---CEEEEC-CC---SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCS-SSSEEE
T ss_pred EEEEEeCCCCCccc---cEEEec-CC---CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecC-CCceEE
Confidence 79999998754211 121222 22 2343 899999988874 454 5899999744 44555332 245677
Q ss_pred EEEEecCCCEEEEEEcC----CeEEEEECCCCeEE
Q 003871 685 YATYSCDGKCIYVSCKS----GHVKVFDTSTLELR 715 (790)
Q Consensus 685 ~l~~s~dg~~l~sgs~d----g~i~vwd~~~~~~~ 715 (790)
.+.++++++.++....+ +.++.||+.+++..
T Consensus 375 ~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 375 GFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp ECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred eeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 88888888877665554 89999999888654
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.05 E-value=9.1e-12 Score=133.70 Aligned_cols=224 Identities=16% Similarity=0.047 Sum_probs=129.2
Q ss_pred CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCC-CEE-E
Q 003871 516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RIT-C 591 (790)
Q Consensus 516 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~-~v~-~ 591 (790)
+..+++++ ||.|..||..+|+.+.++.. ..+.+..+..++ .+++++.||.|+.||..+|+.+..+..+.. .+. +
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 66777777 89999999999999998876 445555556677 778888999999999999988766654321 110 0
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCce
Q 003871 592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 670 (790)
Q Consensus 592 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~ 670 (790)
..+. ++..+++++.|+.++.||.++|+........ . ...++|++..+++ +.|+.|+.||.++|+.
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~----------~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA----------F---ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC----------C---cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 1111 3456788888999999999997754322111 1 1345667777777 4789999999999987
Q ss_pred eeeecCCCCCCCeEEEEEecCC---CEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCE
Q 003871 671 TSQLVPDKMDLPITYATYSCDG---KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 747 (790)
Q Consensus 671 ~~~~~~~~h~~~v~~l~~s~dg---~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~ 747 (790)
+-.+... .....+++++. ..+++++.||.|+.||..+|+.+..+... . ++. ....+++ ++..
T Consensus 153 ~W~~~~~----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~--------~-pv~-~~~~~~~-dg~~ 217 (369)
T 2hz6_A 153 RWNATYF----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA--------S-PVV-AFYVWQR-EGLR 217 (369)
T ss_dssp CCEEEEE----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS--------S-CEE-EEEECTT-SSCE
T ss_pred EEeEecc----cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC--------C-ceE-EEEEecC-CceE
Confidence 6555321 11222333332 56778899999999999999987765421 1 222 1344555 5543
Q ss_pred E----EEEeCCCcEEEEecCCCc----cccccC
Q 003871 748 I----ALGLTNGRVHVIEPLESE----VEWGKL 772 (790)
Q Consensus 748 l----as~s~Dg~i~iW~~~~~~----~~w~~~ 772 (790)
. +.+ ++.++.++..+|+ ..|...
T Consensus 218 ~v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~ 248 (369)
T 2hz6_A 218 KVMHINVA--VETLRYLTFMSGEVGRITKWKYP 248 (369)
T ss_dssp EECCEEEE--HHHHHHHHHHHHHHHHHHTSCCC
T ss_pred eccceeec--ccceeeeehhcCCcccceeeeec
Confidence 2 222 4567888888888 777654
No 231
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.05 E-value=7.2e-09 Score=114.05 Aligned_cols=240 Identities=9% Similarity=0.045 Sum_probs=162.0
Q ss_pred EEEEec-----CcEEEEec--CCeEEEEECCCCcEEEEEcCC-CCCeEEEEE-c-CCC-eEEEEe---------------
Q 003871 510 SCFALR-----GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIATYFIL-L-PQD-LFAFGF--------------- 563 (790)
Q Consensus 510 ~~l~~s-----~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~-~~~v~~l~~-s-~~g-~l~sgs--------------- 563 (790)
..+++. |++++.+. ++.|.+.|+.+.++.+.+.-. ......+++ + |++ ++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence 456663 67777766 578999999999988866532 345788887 5 899 777774
Q ss_pred ---CCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC--------------------------------
Q 003871 564 ---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-------------------------------- 608 (790)
Q Consensus 564 ---~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg-------------------------------- 608 (790)
.++.+.+.|..+.+...++.--. ....++++|||+++++.+.+.
T Consensus 170 ~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred ccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 23579999999998887775322 346688999999998888553
Q ss_pred ------cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEECCCCc-----------
Q 003871 609 ------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN----------- 669 (790)
Q Consensus 609 ------~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~~~~----------- 669 (790)
.|.|.|.++.+. ...+..++.+ ....++.++|||++++++ .+++|.++|+.+.+
T Consensus 249 k~~~i~~V~VID~~~~~~--~~~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEAS--SLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp CSEEETTEEEEECSGGGC--CSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred CeeEECcEEEEeCcccCC--ceeEEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 355666655110 0112223333 245679999999999985 67899999998653
Q ss_pred -eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC----------CeEEEEeccccccCCCCcccccceEEE
Q 003871 670 -HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST----------LELRCQINLTAYAQPGTISLELYPLVI 738 (790)
Q Consensus 670 -~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~----------~~~~~~~~~~~~~~~gh~~~~v~~~~v 738 (790)
.+..+.. ......++|+|+|...++...|+.|.+||+.+ .+.+..+..+ |.| ||.. . ..+.
T Consensus 322 ~v~~~v~v---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqp-Gh~~-~--~~g~ 393 (595)
T 1fwx_A 322 AVVAEPEL---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQP-GHLK-T--VMGE 393 (595)
T ss_dssp GEEECCBC---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCE-EEEE-E--TTTT
T ss_pred ceEEEcCC---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-ccc-ccce-e--ccce
Confidence 2333332 56789999999994444566799999999987 4556665432 221 3311 1 1134
Q ss_pred EEecCCCCEEEEEeC---CCc----------EEEEecCCCc
Q 003871 739 AAHPLEPNRIALGLT---NGR----------VHVIEPLESE 766 (790)
Q Consensus 739 ~~sp~d~~~las~s~---Dg~----------i~iW~~~~~~ 766 (790)
..+| ||++|+++.. |+- -.++|+..++
T Consensus 394 t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 394 TLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp STTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred EeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 5678 8999988763 332 1788886554
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.05 E-value=5.3e-09 Score=110.83 Aligned_cols=225 Identities=10% Similarity=-0.063 Sum_probs=143.8
Q ss_pred eEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEe----------CCCcEEEEeCCCCceEEEEcCC-------CC
Q 003871 526 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKTKAKLKGH-------QN 587 (790)
Q Consensus 526 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs----------~dg~I~iwd~~~~~~~~~l~~h-------~~ 587 (790)
.|.++|..+++.+.++.....+ .+.++||+ .++++. .++.|.+||..+++.+..+... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8899999999999999755555 79999999 777665 3678999999999999887533 12
Q ss_pred CEEEEEEeCCCCEEEEEeC--CCcEEE--EECCCCceeeceeee----eeccCCCC-----CCCCeEEEE----------
Q 003871 588 RITCLAYSLSLNVLVSSGA--DAQLCV--WDAVGWKKLCSKFLH----SFQTGLVP-----ETTIVNHIQ---------- 644 (790)
Q Consensus 588 ~v~~l~~spdg~~l~s~s~--dg~I~v--wd~~~~~~~~~~~l~----~~~~~~~~-----~~~~v~~i~---------- 644 (790)
....++++|||++++++.. +..+.+ +|..+ ....++. ..+.+... ..+.+..+.
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~ 201 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence 3567999999999998875 457888 88865 1111100 00000000 000000010
Q ss_pred ----------------EeCCCCEEE-EEeCCcEEEEECCCCc--eeeeecCCC-----C---CCCeEEEEEecCCCEEEE
Q 003871 645 ----------------FHPDQIHLL-SIHEGQIDVYEAPTLN--HTSQLVPDK-----M---DLPITYATYSCDGKCIYV 697 (790)
Q Consensus 645 ----------------~sp~~~~l~-~~~dg~I~iwd~~~~~--~~~~~~~~~-----h---~~~v~~l~~s~dg~~l~s 697 (790)
.++++..++ ++. +.+.+.|..+.. .+..+.... + ......++|+||++.++.
T Consensus 202 v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV 280 (368)
T 1mda_H 202 VGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred EEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence 033333333 234 677777775432 222221100 0 011122689999998886
Q ss_pred EEc---------CCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCC-EEEEEe-CCCcEEEEecCCCc
Q 003871 698 SCK---------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESE 766 (790)
Q Consensus 698 gs~---------dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~las~s-~Dg~i~iW~~~~~~ 766 (790)
+.. ++.+.++|+.+++.+..+.. | .. +.+++|+| ||+ .+++.. .++.|.++|+.+++
T Consensus 281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v------g---~~--p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISN------G---HD--SDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEE------E---EE--ECEEEECC-SSSCEEEEEETTTTEEEEEESSSCE
T ss_pred EeccccCcccccCCCEEEEECCCCeEEEEEEC------C---CC--cceEEECC-CCCEEEEEccCCCCeEEEEECCCCc
Confidence 543 23566999999998887753 1 12 34899999 776 567777 59999999999987
Q ss_pred cc
Q 003871 767 VE 768 (790)
Q Consensus 767 ~~ 768 (790)
..
T Consensus 349 vv 350 (368)
T 1mda_H 349 DQ 350 (368)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.04 E-value=1.1e-07 Score=100.95 Aligned_cols=232 Identities=13% Similarity=0.082 Sum_probs=148.4
Q ss_pred c--CCCCEEEEEeC-CCcEEEEecCCCCccccccccccccccccCCCceeeeec----ccCC-CCCCeEEEEec-CcEEE
Q 003871 450 S--HSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTND----IAAD-PKDSISCFALR-GSHLF 520 (790)
Q Consensus 450 s--pdg~~l~s~~~-dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~----~~~~-~~~~V~~l~~s-~~~l~ 520 (790)
+ +++++|++.+. +++|.++|+.+... ..++.... +... .......+... +..++
T Consensus 90 ~~~~~r~~l~v~~l~s~~I~viD~~t~p~-----------------~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~V 152 (462)
T 2ece_A 90 KPNIERRFLIVPGLRSSRIYIIDTKPNPR-----------------EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYI 152 (462)
T ss_dssp CTTCCSCEEEEEBTTTCCEEEEECCSCTT-----------------SCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEE
T ss_pred CCCccCCEEEEccCCCCeEEEEECCCCCC-----------------CceeeeeechhhcccccCCCcccceeECCCeEEE
Confidence 7 88998888776 78999999865322 11111111 0000 01122334445 33555
Q ss_pred Eec-C------CeEEEEECCCCcEEEEEcCCCC---CeEEEEEcCCC-eEEEEe-------------------CCCcEEE
Q 003871 521 SAS-G------GKISIFSLETFQTLATFANPPP---IATYFILLPQD-LFAFGF-------------------DDSSILV 570 (790)
Q Consensus 521 s~s-d------g~I~vwd~~~~~~~~~~~~~~~---~v~~l~~s~~g-~l~sgs-------------------~dg~I~i 570 (790)
++. + |.|.++|.++++.+.++..... --..+.|+|++ .+++.. .+.+|.+
T Consensus 153 s~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v 232 (462)
T 2ece_A 153 SALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF 232 (462)
T ss_dssp EEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred EcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEE
Confidence 443 3 6899999999999998863222 13458889999 777764 3679999
Q ss_pred EeCCCCceEEEEcCC-C-CCEEEEEE--eCCCCEEEEEe------CCCcEEEEECCCCceeeceeeeeeccCC-C---C-
Q 003871 571 HCPCTKKTKAKLKGH-Q-NRITCLAY--SLSLNVLVSSG------ADAQLCVWDAVGWKKLCSKFLHSFQTGL-V---P- 635 (790)
Q Consensus 571 wd~~~~~~~~~l~~h-~-~~v~~l~~--spdg~~l~s~s------~dg~I~vwd~~~~~~~~~~~l~~~~~~~-~---~- 635 (790)
||+.+++.+.++..- . .....+.| +|+++++.+++ .+++|.+|....++......+. +.... . +
T Consensus 233 ~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId-i~~~~v~~~lp~ 311 (462)
T 2ece_A 233 WDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE-IPAEPLEGNLPE 311 (462)
T ss_dssp EETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE-ECCEECCSSCCG
T ss_pred EECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe-CCCccccccccc
Confidence 999999888877642 1 23455656 99999877766 5678888776655432222221 11100 0 0
Q ss_pred -------CCCCeEEEEEeCCCCEEEEE--eCCcEEEEECCC---CceeeeecCCCC------------CCCeEEEEEecC
Q 003871 636 -------ETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT---LNHTSQLVPDKM------------DLPITYATYSCD 691 (790)
Q Consensus 636 -------~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~~---~~~~~~~~~~~h------------~~~v~~l~~s~d 691 (790)
.......|.+||||++|.++ ..+.|.+||+.. .+.+..+...+. ......++++||
T Consensus 312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD 391 (462)
T 2ece_A 312 ILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD 391 (462)
T ss_dssp GGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred cccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence 00357889999999999996 578899999852 355555544211 113688999999
Q ss_pred CCEEEEEE
Q 003871 692 GKCIYVSC 699 (790)
Q Consensus 692 g~~l~sgs 699 (790)
|++|+++.
T Consensus 392 Gk~LyVaN 399 (462)
T 2ece_A 392 GRRVYVTN 399 (462)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 99999887
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.03 E-value=1.1e-08 Score=107.59 Aligned_cols=287 Identities=10% Similarity=0.021 Sum_probs=175.5
Q ss_pred CCCCcceeeeccCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeccCCCceEeee
Q 003871 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLK 420 (790)
Q Consensus 341 ~~d~~i~l~iwd~~~g~~~~~~~~~~~~~l~~h~~~v~~~~~~i~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd 420 (790)
+.++.+. .|| .+|+.++ ....+...+ .++... ++|... .++.+ +..+|
T Consensus 37 t~~~~l~--~~d-~~g~~~~--------~~~~~~~~~-------~~~~~~-------~~g~l~-----v~t~~--l~~~d 84 (330)
T 3hxj_A 37 SSNKNLY--AIN-TDGSVKW--------FFKSGEIIE-------CRPSIG-------KDGTIY-----FGSDK--VYAIN 84 (330)
T ss_dssp STTTTTE--EEC-TTSCEEE--------SSCGGGEEE-------ECCEET-------TTTEEC-----CSSCE--EEEEC
T ss_pred cCCCEEE--EEC-CCCcEEE--------EEecCCCcc-------cceEEe-------cCCcEE-----EecCc--EEEEC
Confidence 4467787 889 7887763 222233333 566665 567654 34443 77777
Q ss_pred ccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeec
Q 003871 421 LQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTND 500 (790)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~ 500 (790)
.. ......... +........+. +..+..++.++.+..+|.. +.. +|...
T Consensus 85 ~~----g~~~~~~~~----~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~------------~~~~~-------- 133 (330)
T 3hxj_A 85 PD----GTEKWRFDT----KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE------------KWRFK-------- 133 (330)
T ss_dssp CC----GGGGGGSCC---------CCEEEE--TTEEEEECTTSEEEEECTT-SCE------------EEEEE--------
T ss_pred CC----CcEEEEEEC----CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE------------EEEEc--------
Confidence 53 222222221 11112222233 4457788888889888866 322 12111
Q ss_pred ccCCCCCCeEEEEec-CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCce
Q 003871 501 IAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKT 578 (790)
Q Consensus 501 ~~~~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~ 578 (790)
.....+.++... +..++.++ ++.|..+|.. ++....+......+.++...++|.+..++ +.|..+| .+++.
T Consensus 134 ---~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~ 206 (330)
T 3hxj_A 134 ---TKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTE 206 (330)
T ss_dssp ---CSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCE
T ss_pred ---CCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcE
Confidence 122234445555 44455566 7999999998 88877777656667777887777555555 8899999 77877
Q ss_pred EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCC
Q 003871 579 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEG 658 (790)
Q Consensus 579 ~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg 658 (790)
...+......+.++...++|. +..++.++.+..+|..+ +.. ....... ..+.++.+.+++...+.+.+|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g-~~~-----~~~~~~~----~~~~~~~~~~~g~l~v~t~~g 275 (330)
T 3hxj_A 207 KWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG-TEK-----WRFKTGK----RIESSPVIGNTDTIYFGSYDG 275 (330)
T ss_dssp EEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS-CEE-----EEEECSS----CCCSCCEECTTSCEEEECTTC
T ss_pred EEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC-CEe-----EEeeCCC----CccccceEcCCCeEEEecCCC
Confidence 777665556688888888875 45566778888888543 322 1122111 233456667777666556778
Q ss_pred cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003871 659 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 712 (790)
Q Consensus 659 ~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~ 712 (790)
.+..+|. +++.+..+.. ....+.++..+++|+ |..|+.+|.+++...+..
T Consensus 276 gl~~~d~-~g~~~~~~~~--~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 276 HLYAINP-DGTEKWNFET--GSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp EEEEECT-TSCEEEEEEC--SSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred CEEEECC-CCcEEEEEEc--CCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 9999996 6777666643 245677777777876 556888999998876543
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.02 E-value=1.1e-07 Score=101.10 Aligned_cols=227 Identities=16% Similarity=0.166 Sum_probs=143.8
Q ss_pred CcEEEEec--CCeEEEEECCCC----cEEEEEc-------CCCCCeEEEEEcCCC-eEEEEeCC------CcEEEEeCCC
Q 003871 516 GSHLFSAS--GGKISIFSLETF----QTLATFA-------NPPPIATYFILLPQD-LFAFGFDD------SSILVHCPCT 575 (790)
Q Consensus 516 ~~~l~s~s--dg~I~vwd~~~~----~~~~~~~-------~~~~~v~~l~~s~~g-~l~sgs~d------g~I~iwd~~~ 575 (790)
+++++..+ ++.|.++|+.+. +..++++ .....-..+.++|+| ++ ++..+ |.|.++|..+
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~V-s~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYI-SALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEE-EEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEE-EcCCCcCCCCCCeEEEEECCC
Confidence 55666655 799999999765 6666663 011134567889999 44 33333 6899999999
Q ss_pred CceEEEEcCC--C-CCEEEEEEeCCCCEEEEEe-------------------CCCcEEEEECCCCceeeceeeeeeccCC
Q 003871 576 KKTKAKLKGH--Q-NRITCLAYSLSLNVLVSSG-------------------ADAQLCVWDAVGWKKLCSKFLHSFQTGL 633 (790)
Q Consensus 576 ~~~~~~l~~h--~-~~v~~l~~spdg~~l~s~s-------------------~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 633 (790)
++.+..+... . ..-..+.|+|+++.+++.. .+.+|.+||+.+++.. +++..+.
T Consensus 174 ~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~-----~tI~vg~ 248 (462)
T 2ece_A 174 FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI-----HSLTLGE 248 (462)
T ss_dssp CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE-----EEEESCT
T ss_pred CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe-----eEEecCC
Confidence 9999988632 1 2234588899999988874 3689999999985433 2233321
Q ss_pred CCCCCCeEEEEE--eCCCCEEEEE-------eCCcEEEEECCCCce--eeee--cCC---C-----------CCCCeEEE
Q 003871 634 VPETTIVNHIQF--HPDQIHLLSI-------HEGQIDVYEAPTLNH--TSQL--VPD---K-----------MDLPITYA 686 (790)
Q Consensus 634 ~~~~~~v~~i~~--sp~~~~l~~~-------~dg~I~iwd~~~~~~--~~~~--~~~---~-----------h~~~v~~l 686 (790)
.. .....+.| +|++++++++ .+++|.+|....++. .+.+ ... . -......+
T Consensus 249 ~g--~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 249 EN--RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp TE--EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CC--CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 10 23455656 9999988873 345777665544321 1111 000 0 02457889
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCC---CeEEEEeccccc-----cCCCCcccccceEEEEEecCCCCEEEEEe
Q 003871 687 TYSCDGKCIYVSCK-SGHVKVFDTST---LELRCQINLTAY-----AQPGTISLELYPLVIAAHPLEPNRIALGL 752 (790)
Q Consensus 687 ~~s~dg~~l~sgs~-dg~i~vwd~~~---~~~~~~~~~~~~-----~~~gh~~~~v~~~~v~~sp~d~~~las~s 752 (790)
.+|+||++|+++.. .+.|.+||+.. .+++..+..... .+.|. .....+-.++++| ||++|+++.
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~-~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH-KLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC-CCCSCCCCEEECT-TSSEEEEEC
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc-cCCCCCCEEEEcC-CCCEEEEEc
Confidence 99999999988776 68999999863 355555432100 00000 0001244889999 899998887
No 236
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.02 E-value=6.1e-11 Score=127.21 Aligned_cols=184 Identities=15% Similarity=0.086 Sum_probs=105.5
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccC-CCCC
Q 003871 558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPE 636 (790)
Q Consensus 558 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~-~~~~ 636 (790)
.+++++.||.|+.||..+|+.+..+.. +.+.+..+.+++..+++++.|+.|+.||..+|+........ .... ..
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~-~~~~~~~-- 85 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT-IPELVQA-- 85 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC-HHHHHTT--
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc-Ccccccc--
Confidence 899999999999999999999888775 44555555667778888889999999999887643222111 0000 00
Q ss_pred CCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 003871 637 TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR 715 (790)
Q Consensus 637 ~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~ 715 (790)
.++ +..++ .+++ +.++.++.||..+|+.+..+... . ...++|++..+++++.|+.|+.||..+|+.+
T Consensus 86 -sp~----~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~--~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 86 -SPC----RSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSA--F----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp -CSC----C------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred -Cce----EecCC-EEEEEeCCCEEEEEECCCCcEEEEecCC--C----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 111 11233 4555 57899999999999987766432 1 2345678899999999999999999999876
Q ss_pred EEeccccccCCCCcccccceEEEEEecCCC---CEEEEEeCCCcEEEEecCCCcccccc
Q 003871 716 CQINLTAYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLESEVEWGK 771 (790)
Q Consensus 716 ~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~---~~las~s~Dg~i~iW~~~~~~~~w~~ 771 (790)
..+.... .. ..++++ +. ..+++++.||.|+.||..+|+..|..
T Consensus 154 W~~~~~~----------~~--~~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 154 WNATYFD----------YA--ASLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp CEEEEEE----------EC--CBCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred EeEeccc----------cc--CccccC-CccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 6554211 01 122222 21 45677889999999999999999975
No 237
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.96 E-value=2.5e-06 Score=101.24 Aligned_cols=327 Identities=9% Similarity=0.009 Sum_probs=202.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeecc----CCCCCCceEEEEEcCCCCEEEEEe
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP----DNSFGGRVVRLIYSHSGDFLVALT 460 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~----~~~h~~~V~~l~~spdg~~l~s~~ 460 (790)
.++... ++|... .|+.+ -+.+|+.. ......+... ..-....|.++...++|. |-.|+
T Consensus 266 ~~i~~d-------~~g~lW-----igt~~-Gl~~~~~~----~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt 327 (795)
T 4a2l_A 266 RSLAMD-------SQNRLW-----IGTFN-DLNIYHEG----TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGT 327 (795)
T ss_dssp EEEEEC-------TTSCEE-----EEESS-CEEEEETT----TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEE
T ss_pred EEEEEc-------CCCCEE-----EEeCC-hhheEcCC----CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEE
Confidence 666665 667654 34444 58888875 3444433211 011346799999999998 66777
Q ss_pred CCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEec-CCeEEEEECCCCcEE
Q 003871 461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTL 538 (790)
Q Consensus 461 ~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~~~ 538 (790)
.++-|..|+..+... ..+..... . ..-....|.++... ...|..|+ ++.|..|+..+++..
T Consensus 328 ~~~Gl~~~~~~~~~~-----------~~~~~~~~---~---~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~ 390 (795)
T 4a2l_A 328 YFGGLNYYHPIRNRF-----------KNIRNIPY---K---NSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFT 390 (795)
T ss_dssp SSSCEEEECGGGGSS-----------EEECCCTT---S---SSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEE
T ss_pred CCCCeEEeCCCcccc-----------eEEcCCCC---C---CCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEE
Confidence 777788887654321 00000000 0 00134568899888 55566666 678999998876544
Q ss_pred EEEcC--------CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEc----CCCCCEEEEEEeCCCCEEEEEe
Q 003871 539 ATFAN--------PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK----GHQNRITCLAYSLSLNVLVSSG 605 (790)
Q Consensus 539 ~~~~~--------~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~----~h~~~v~~l~~spdg~~l~s~s 605 (790)
..... ....|.++...++| .|.+|+.++-|..||..+++...... .....|.++...++|++.+..
T Consensus 391 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt- 469 (795)
T 4a2l_A 391 SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT- 469 (795)
T ss_dssp EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-
T ss_pred EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-
Confidence 32211 13568899888888 49999998889999998876443221 134579999998888765544
Q ss_pred CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecC---C--CCC
Q 003871 606 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP---D--KMD 680 (790)
Q Consensus 606 ~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~---~--~h~ 680 (790)
. +-+.+||..+++........ ..... ....|.++...++|...+... +.+..||..+++. .+.. . -..
T Consensus 470 ~-~Gl~~~~~~~~~~~~~~~~~-~~~~~--~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~ 542 (795)
T 4a2l_A 470 L-SALVRFNPEQRSFTTIEKEK-DGTPV--VSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTK 542 (795)
T ss_dssp S-SCEEEEETTTTEEEECCBCT-TCCBC--CCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGG
T ss_pred c-CceeEEeCCCCeEEEccccc-ccccc--CCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCC
Confidence 4 45888998875432111000 00000 114789999999998776655 6799999877655 3321 0 124
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEE
Q 003871 681 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 760 (790)
Q Consensus 681 ~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW 760 (790)
..|.++..+++|++.++. .+ -+..||..+++... +.... |-....|. ++...+ +|.+.+++ ++.|..|
T Consensus 543 ~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~~-~~~~~----gl~~~~i~--~i~~d~-~g~lWi~t--~~Gl~~~ 610 (795)
T 4a2l_A 543 LFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIKR-YNTTN----GLPNNVVY--GILEDS-FGRLWLST--NRGISCF 610 (795)
T ss_dssp SCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEE-ECGGG----TCSCSCEE--EEEECT-TSCEEEEE--TTEEEEE
T ss_pred CeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEEE-eCCCC----CCchhheE--EEEECC-CCCEEEEc--CCceEEE
Confidence 578999999999865543 34 68889988876543 32111 22233455 788887 67766655 3557788
Q ss_pred ecCCCc
Q 003871 761 EPLESE 766 (790)
Q Consensus 761 ~~~~~~ 766 (790)
++.+++
T Consensus 611 ~~~~~~ 616 (795)
T 4a2l_A 611 NPETEK 616 (795)
T ss_dssp ETTTTE
T ss_pred cCCCCc
Confidence 887654
No 238
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.95 E-value=1.6e-06 Score=102.96 Aligned_cols=325 Identities=10% Similarity=0.052 Sum_probs=199.9
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCC-CCc-eEEEEEcCCCCEEEEEeCC
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSF-GGR-VVRLIYSHSGDFLVALTQT 462 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h-~~~-V~~l~~spdg~~l~s~~~d 462 (790)
+++... ++|+.. +.. . +.+..|+.. .+.+..+.. ++ ... |.++...++|. +..++.+
T Consensus 134 ~~i~~d-------~~g~lw----i~t-~-~gl~~~~~~----~~~~~~~~~---~~~~~~~i~~i~~d~~g~-lwigt~~ 192 (795)
T 4a2l_A 134 NGIEEI-------SPEQLL----IST-P-EGLIMFDIK----ESKFIDDSF---STAMHKTIASTLYRQGDQ-IYIGTST 192 (795)
T ss_dssp CEEEEE-------ETTEEE----EEE-T-TEEEEEETT----TTEEECSSS---CHHHHTCCEEEEEEETTE-EEEEESS
T ss_pred EEEEEC-------CCCCEE----EEE-C-CceEEEECC----CCEEEeccC---CCCCCcceEEEEECCCCC-EEEEECC
Confidence 777766 677765 443 3 458888875 233332210 11 123 88898888887 4456665
Q ss_pred CcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEec-CCeEEEEECCCCcEEEE
Q 003871 463 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLAT 540 (790)
Q Consensus 463 g~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~ 540 (790)
+.+..|+..+... .... .......|.++... ...+..++ ++.+..||..+++....
T Consensus 193 ~Gl~~~~~~~~~~---------------------~~~~-~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 193 DGLYTYSITQKTF---------------------EKVI-PILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp SCEEEEETTTCCE---------------------EECC-----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEE
T ss_pred CCEEEEeCCCCeE---------------------EEec-CCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEe
Confidence 5588887654322 1100 01134568888877 55555555 55688999887654432
Q ss_pred EcC-------CCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcC-------CCCCEEEEEEeCCCCEEEEEeC
Q 003871 541 FAN-------PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG-------HQNRITCLAYSLSLNVLVSSGA 606 (790)
Q Consensus 541 ~~~-------~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~-------h~~~v~~l~~spdg~~l~s~s~ 606 (790)
... ....|.++...++|.+..|+.+ -|.+||..+++....... ....|.++...++|.+ ..|+.
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-Wigt~ 328 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM-WLGTY 328 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-EEEES
T ss_pred ecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-EEEEC
Confidence 221 1356899998888855566665 588999887654332211 2357999999998874 45777
Q ss_pred CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCC------CCC
Q 003871 607 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD------KMD 680 (790)
Q Consensus 607 dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~------~h~ 680 (790)
++-|..|+..++... .+........-....|.++...++|.+.+...++.|..||..+++...-.... -..
T Consensus 329 ~~Gl~~~~~~~~~~~---~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (795)
T 4a2l_A 329 FGGLNYYHPIRNRFK---NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGS 405 (795)
T ss_dssp SSCEEEECGGGGSSE---EECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSC
T ss_pred CCCeEEeCCCcccce---EEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCC
Confidence 788889987663321 11101100000114799999999988766667778999998876543322110 114
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEE
Q 003871 681 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 760 (790)
Q Consensus 681 ~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW 760 (790)
..|.+++..++|+.|..|+.++-|..||..+++......... +.....|+ ++...+ +|.+.+.. . +.+.+|
T Consensus 406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~----~l~~~~v~--~i~~d~-~g~lwigt-~-~Gl~~~ 476 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS----QLVNENVY--AILPDG-EGNLWLGT-L-SALVRF 476 (795)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS----CCSCSCEE--EEEECS-SSCEEEEE-S-SCEEEE
T ss_pred ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC----CcCCCeeE--EEEECC-CCCEEEEe-c-CceeEE
Confidence 679999999999867778887889999999887544321100 11133455 888777 67765544 4 458889
Q ss_pred ecCCCc
Q 003871 761 EPLESE 766 (790)
Q Consensus 761 ~~~~~~ 766 (790)
+..+++
T Consensus 477 ~~~~~~ 482 (795)
T 4a2l_A 477 NPEQRS 482 (795)
T ss_dssp ETTTTE
T ss_pred eCCCCe
Confidence 987764
No 239
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.93 E-value=2.4e-07 Score=107.17 Aligned_cols=292 Identities=12% Similarity=0.054 Sum_probs=178.3
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCC-eEEEEecCcEEEEec-CCeEEEE
Q 003871 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS-ISCFALRGSHLFSAS-GGKISIF 530 (790)
Q Consensus 453 g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-V~~l~~s~~~l~s~s-dg~I~vw 530 (790)
+..+++++.++.+.-+|..+++. +|............. ..... -..+++.+..+++++ |+.|..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~v~~~dg~l~al 132 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKE------------LWRYDPEVAKVKART-SCCDAVNRGVALWGDKVYVGTLDGRLIAL 132 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCE------------EEEECCCCCGGGGGG-CTTCSCCCCCEEEBTEEEEECTTSEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChh------------ceEECCCCCcccccc-ccccCCccceEEECCEEEEEcCCCEEEEE
Confidence 44677788888899888887665 454332211000000 00001 112344555666666 9999999
Q ss_pred ECCCCcEEEEEcCCC----CCeEE-EEEcCCCeEEEEeC------CCcEEEEeCCCCceEEEEcCC---CC---------
Q 003871 531 SLETFQTLATFANPP----PIATY-FILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGH---QN--------- 587 (790)
Q Consensus 531 d~~~~~~~~~~~~~~----~~v~~-l~~s~~g~l~sgs~------dg~I~iwd~~~~~~~~~l~~h---~~--------- 587 (790)
|..+|+.+.++.... ..+.+ ..+ .++.++++.. +|.|+.+|..+|+.+..+... ..
T Consensus 133 D~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~ 211 (668)
T 1kv9_A 133 DAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELR 211 (668)
T ss_dssp ETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred ECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccc
Confidence 999999998876421 11111 111 1445555543 589999999999988776421 00
Q ss_pred -------------------CEEEEEEeCCCCEEEEEeCCC-------------------cEEEEECCCCceeeceeeeee
Q 003871 588 -------------------RITCLAYSLSLNVLVSSGADA-------------------QLCVWDAVGWKKLCSKFLHSF 629 (790)
Q Consensus 588 -------------------~v~~l~~spdg~~l~s~s~dg-------------------~I~vwd~~~~~~~~~~~l~~~ 629 (790)
....++++|+...++.++.++ .|..+|.++|+........
T Consensus 212 ~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~-- 289 (668)
T 1kv9_A 212 EAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT-- 289 (668)
T ss_dssp HHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS--
T ss_pred cccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC--
Confidence 112468888888888887766 3999999998765433221
Q ss_pred ccCCCC----CCCCeEEEEEeCCCC---EEEE-EeCCcEEEEECCCCceeeeecCCC----------CCC----------
Q 003871 630 QTGLVP----ETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDK----------MDL---------- 681 (790)
Q Consensus 630 ~~~~~~----~~~~v~~i~~sp~~~---~l~~-~~dg~I~iwd~~~~~~~~~~~~~~----------h~~---------- 681 (790)
.|.. ...+.....+..+|+ .++. +.+|.++++|..+|+.+....... ...
T Consensus 290 --~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~ 367 (668)
T 1kv9_A 290 --PGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYE 367 (668)
T ss_dssp --TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCS
T ss_pred --CCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcccccccccc
Confidence 1110 001222233334665 4555 489999999999999874332110 000
Q ss_pred --------------CeEEEEEecCCCEEEEEE------------------------------------cCCeEEEEECCC
Q 003871 682 --------------PITYATYSCDGKCIYVSC------------------------------------KSGHVKVFDTST 711 (790)
Q Consensus 682 --------------~v~~l~~s~dg~~l~sgs------------------------------------~dg~i~vwd~~~ 711 (790)
.-..++++|+...++... .+|.|+.||+.+
T Consensus 368 ~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t 447 (668)
T 1kv9_A 368 KEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK 447 (668)
T ss_dssp SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT
T ss_pred CCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC
Confidence 011268888877766421 248899999999
Q ss_pred CeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccccccCCC
Q 003871 712 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 774 (790)
Q Consensus 712 ~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~~~~ 774 (790)
|+.+-..... .... ...... .+.+++.++.||.++.||..+|+..|....+
T Consensus 448 G~~~W~~~~~---------~~~~--~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 448 QKAAWKVPYP---------THWN--GGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp TEEEEEEEES---------SSCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CcEEEEccCC---------CCCc--CceeEe-CCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 9987765421 1122 222333 5778888999999999999999999976443
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.90 E-value=3.6e-06 Score=85.38 Aligned_cols=215 Identities=12% Similarity=0.000 Sum_probs=136.6
Q ss_pred CCeEEEEec--CcEEEEec--CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-e-EEEEeCCCcEEEEeCCCCceEE
Q 003871 507 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDDSSILVHCPCTKKTKA 580 (790)
Q Consensus 507 ~~V~~l~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~-l~sgs~dg~I~iwd~~~~~~~~ 580 (790)
..+.+++++ ++.|+.+. .+.|..++...+.....+.........+++++++ . +++-...+.|.+++........
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 346788888 55665555 6899999998655433333333567899999976 4 4444556799999987433222
Q ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeC---CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--
Q 003871 581 KLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-- 655 (790)
Q Consensus 581 ~l~~h~~~v~~l~~spdg~~l~s~s~---dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-- 655 (790)
...........++++|++..|..+.. .+.|..+++..... ..+. .... .....++++|++..|+++
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~---~~~~---~~~~---~~P~gia~d~~~~~lyv~d~ 186 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RILA---QDNL---GLPNGLTFDAFSSQLCWVDA 186 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEEE---CTTC---SCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---EEEE---ECCC---CCCcEEEEcCCCCEEEEEEC
Confidence 22222246789999997666655554 36888888875221 1111 1111 357899999998877764
Q ss_pred eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEeccccccCCCCcccccc
Q 003871 656 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 734 (790)
Q Consensus 656 ~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 734 (790)
..+.|.++|.........+.. ......++.. +..|+.+. .++.|.++|..+++.+..+.. |. ....+
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~------g~-~~~p~ 254 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP------HK-QTRLY 254 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC------SS-CCCCC
T ss_pred CCCEEEEEecCCCceEEEecC---CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc------cc-ccccc
Confidence 567899999975443333322 2344666654 45555444 568999999999998888753 21 11233
Q ss_pred eEEEEEecCCC
Q 003871 735 PLVIAAHPLEP 745 (790)
Q Consensus 735 ~~~v~~sp~d~ 745 (790)
++++.| ++
T Consensus 255 --gi~~~~-~~ 262 (267)
T 1npe_A 255 --GITIAL-SQ 262 (267)
T ss_dssp --CEEEEC-SC
T ss_pred --eeeecC-cc
Confidence 777888 54
No 241
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.87 E-value=1.8e-07 Score=99.13 Aligned_cols=212 Identities=11% Similarity=0.057 Sum_probs=130.1
Q ss_pred CCeEEEEEcCCC-eEEEEe--CCCcEEEEeCCCCceEEEEc-------CCCCCEEEEEEeCCCCEEEEEeC-----CCcE
Q 003871 546 PIATYFILLPQD-LFAFGF--DDSSILVHCPCTKKTKAKLK-------GHQNRITCLAYSLSLNVLVSSGA-----DAQL 610 (790)
Q Consensus 546 ~~v~~l~~s~~g-~l~sgs--~dg~I~iwd~~~~~~~~~l~-------~h~~~v~~l~~spdg~~l~s~s~-----dg~I 610 (790)
..+..++++|+| .+++.. .++.+.+|.+.+++. ..+. +|...+.+++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 567899999999 777653 234244444445543 2221 24567999999999876665433 5789
Q ss_pred EEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-----eCCcEEEEECCCCceeeeecCCCC------
Q 003871 611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-----HEGQIDVYEAPTLNHTSQLVPDKM------ 679 (790)
Q Consensus 611 ~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-----~dg~I~iwd~~~~~~~~~~~~~~h------ 679 (790)
.+||+.+++......+ +.....+...+..++++|++..++++ .++.|.+||+.+++..+.+..+..
T Consensus 96 ~~~d~~tg~~~~~~~~---~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYL---PPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI 172 (343)
T ss_dssp EEEETTTTEEEEEEEC---CTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred EEEECCCCeEEEEEEC---ChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence 9999998764332222 11111111356899999876555543 467899999988876655422000
Q ss_pred ---------------------CCCeEEEEEecCCCEEEEEEcCC-eEEEEECC---CCeEEE-EeccccccCCCCccccc
Q 003871 680 ---------------------DLPITYATYSCDGKCIYVSCKSG-HVKVFDTS---TLELRC-QINLTAYAQPGTISLEL 733 (790)
Q Consensus 680 ---------------------~~~v~~l~~s~dg~~l~sgs~dg-~i~vwd~~---~~~~~~-~~~~~~~~~~gh~~~~v 733 (790)
...+..++|+|||+.|+.+..++ .++.++.. .+..-. .+. ..+...|+ ...
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~g~-~g~- 249 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELG-SKIERYSE-KPI- 249 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHH-TTCEEEEE-CCS-
T ss_pred ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhh-cceEeccc-CCC-
Confidence 02368899999999998887766 55555532 111000 000 00000011 112
Q ss_pred ceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 734 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 734 ~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
+..+++++ +|.++++...++.|.+|+..+++
T Consensus 250 -pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 250 -CDGISIDK-DHNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp -CSCEEECT-TCCEEEEEGGGTEEEEEETTTTE
T ss_pred -CceEEECC-CCCEEEEccCCCeEEEEECCCCC
Confidence 23789999 89999999899999999985554
No 242
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.86 E-value=8e-07 Score=100.58 Aligned_cols=291 Identities=12% Similarity=0.069 Sum_probs=173.9
Q ss_pred CCEEEEEeC-CCcEEEEec-CCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEEEEec-CCeEEE
Q 003871 453 GDFLVALTQ-TATHKLWKW-QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISI 529 (790)
Q Consensus 453 g~~l~s~~~-dg~i~vw~~-~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l~s~s-dg~I~v 529 (790)
+..+++++. ++.+.-+|. .+++. +|....+..............-..+++.+..+++++ |+.+..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~------------~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~a 129 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKI------------VWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLA 129 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSE------------EEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccE------------EEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEE
Confidence 445677777 788888888 66655 454322110000000000000112334555666666 899999
Q ss_pred EECCCCcEEEEEcCCCC----CeE-EEEEcCCCeEEEEeC------CCcEEEEeCCCCceEEEEcCCCCC----------
Q 003871 530 FSLETFQTLATFANPPP----IAT-YFILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQNR---------- 588 (790)
Q Consensus 530 wd~~~~~~~~~~~~~~~----~v~-~l~~s~~g~l~sgs~------dg~I~iwd~~~~~~~~~l~~h~~~---------- 588 (790)
+|..+|+.+.++..... .+. ..... ++.+++++. ++.|+.+|..+|+.+..+......
T Consensus 130 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~ 208 (571)
T 2ad6_A 130 LDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFN 208 (571)
T ss_dssp EETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred EECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccc
Confidence 99999999887753221 121 11111 455555554 789999999999988776432110
Q ss_pred ----------------------------EEEEEEeCCCCEEEEEeCC----------------CcEEEEECCCCceeece
Q 003871 589 ----------------------------ITCLAYSLSLNVLVSSGAD----------------AQLCVWDAVGWKKLCSK 624 (790)
Q Consensus 589 ----------------------------v~~l~~spdg~~l~s~s~d----------------g~I~vwd~~~~~~~~~~ 624 (790)
...+++.++...+..++.+ +.|..+|.++|+.....
T Consensus 209 ~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~ 288 (571)
T 2ad6_A 209 SANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGY 288 (571)
T ss_dssp TTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEE
T ss_pred cccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEe
Confidence 0135677766677666532 35999999998765433
Q ss_pred eeeeeccCCC-----CCCCCeEEEEEeCCCC---EEEEE-eCCcEEEEECCCCceeeeecCCCC-----------CCCe-
Q 003871 625 FLHSFQTGLV-----PETTIVNHIQFHPDQI---HLLSI-HEGQIDVYEAPTLNHTSQLVPDKM-----------DLPI- 683 (790)
Q Consensus 625 ~l~~~~~~~~-----~~~~~v~~i~~sp~~~---~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h-----------~~~v- 683 (790)
... .|. ....++ -+...++|+ .++.+ .+|.++++|..+|+.+-.+..... ..++
T Consensus 289 ~~~----~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~ 363 (571)
T 2ad6_A 289 QKT----PHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVR 363 (571)
T ss_dssp ESS----TTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEE
T ss_pred cCC----CCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceec
Confidence 221 110 000122 123335774 44554 788999999999998766543210 0111
Q ss_pred -------------------------EEEEEecCCCEEEEEE-------------------------------------cC
Q 003871 684 -------------------------TYATYSCDGKCIYVSC-------------------------------------KS 701 (790)
Q Consensus 684 -------------------------~~l~~s~dg~~l~sgs-------------------------------------~d 701 (790)
..++|+|+...++... .+
T Consensus 364 ~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~ 443 (571)
T 2ad6_A 364 DPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEM 443 (571)
T ss_dssp CGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCC
T ss_pred ccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCC
Confidence 2467888888777654 24
Q ss_pred CeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccccccCC
Q 003871 702 GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 773 (790)
Q Consensus 702 g~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~~~ 773 (790)
|.|+.||..+|+.+-.+... ..+. +..... .+..++.++.||.|+.||..+|+..|....
T Consensus 444 g~l~a~D~~tG~~~W~~~~~---------~~~~--~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 444 GQIRAFDLTTGKAKWTKWEK---------FAAW--GGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp EEEEEECTTTCCEEEEEEES---------SCCC--SBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCCEEEEecCC---------CCcc--ceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 78999999999987776421 1111 111122 456777799999999999999999997644
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.85 E-value=5.5e-07 Score=90.06 Aligned_cols=216 Identities=13% Similarity=-0.009 Sum_probs=142.6
Q ss_pred CcEEEEEcCCCC--CeEEEEEcCCC-eEEEEeC--CCcEEEEeCCCCceEEEEcCCC-CCEEEEEEeCCCCEEE-EEeCC
Q 003871 535 FQTLATFANPPP--IATYFILLPQD-LFAFGFD--DSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLV-SSGAD 607 (790)
Q Consensus 535 ~~~~~~~~~~~~--~v~~l~~s~~g-~l~sgs~--dg~I~iwd~~~~~~~~~l~~h~-~~v~~l~~spdg~~l~-s~s~d 607 (790)
.+.+.++. |.. ....++|++++ .+++.+. ++.|.++|+.+++.+..+.... .....+++. ++.|. +.-.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 34556664 333 35789999988 4444443 5799999999999988875322 223355555 44554 44467
Q ss_pred CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCC---CCe
Q 003871 608 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPI 683 (790)
Q Consensus 608 g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~---~~v 683 (790)
+.+.++|..+.+... +++.+ .+ .. ..+++||+.++++ .++.|.++|..+.+.+..+....+. ..+
T Consensus 86 ~~v~viD~~t~~v~~-----~i~~g-~~--~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIK-----NFTHQ-MK--DG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp SEEEEEETTTTEEEE-----EEECC-SS--SC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CEEEEEECCCCcEEE-----EEECC-CC--Ce---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 899999999865433 33333 11 11 3356688777775 6788999999999988887653221 246
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccC----CCCcccccceEEEEEecCCCCEEEEEeCCCcEEE
Q 003871 684 TYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ----PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 759 (790)
Q Consensus 684 ~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~----~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~i 759 (790)
..+.|. +|+..+....++.|.+.|..+++.+..+......+ .++ .....+..++|+|+...+++++...+++.+
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~-~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF-RDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC-TTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc-cccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 788888 77555555467999999999999998886432100 011 111224599999943456677778889999
Q ss_pred EecCCCc
Q 003871 760 IEPLESE 766 (790)
Q Consensus 760 W~~~~~~ 766 (790)
.++.+..
T Consensus 233 i~l~~~~ 239 (266)
T 2iwa_A 233 IKLHLVR 239 (266)
T ss_dssp EEEEECC
T ss_pred EEEeccc
Confidence 9987654
No 244
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.78 E-value=4.2e-07 Score=89.69 Aligned_cols=199 Identities=13% Similarity=0.042 Sum_probs=128.9
Q ss_pred cEEEEEcCCCCC--eEEEEEcCCC-eEEEEeCCC--cEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCc
Q 003871 536 QTLATFANPPPI--ATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQ 609 (790)
Q Consensus 536 ~~~~~~~~~~~~--v~~l~~s~~g-~l~sgs~dg--~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s-~dg~ 609 (790)
+.++++. |... ...+.|+ ++ ++.+.+.+| .|+.+|+.+++.+..+.... ........++++.|.... .++.
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCE
Confidence 3456663 4433 3778888 67 666666665 89999999999988876432 333333333455555544 5889
Q ss_pred EEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCC---CCeEE
Q 003871 610 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITY 685 (790)
Q Consensus 610 I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~---~~v~~ 685 (790)
+.+||..+.+.... ++.+.. ...++++++.|+.+ .++.|.++|..+.+.+.++...... ..++.
T Consensus 109 v~v~D~~t~~~~~t-----i~~~~e-------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE 176 (262)
T 3nol_A 109 GFVWNIRNLRQVRS-----FNYDGE-------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNE 176 (262)
T ss_dssp EEEEETTTCCEEEE-----EECSSC-------CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred EEEEECccCcEEEE-----EECCCC-------ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence 99999999664433 222211 12334677777775 4678999999999988887653222 33456
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCC---CCc-ccccceEEEEEecCCCCEEEEEeC
Q 003871 686 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP---GTI-SLELYPLVIAAHPLEPNRIALGLT 753 (790)
Q Consensus 686 l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~---gh~-~~~v~~~~v~~sp~d~~~las~s~ 753 (790)
+.|. +|+..+..-.++.|.+.|..+|+.+..+......+. .+. ... ...+||+| +++.|..+|.
T Consensus 177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~v--lNGIA~dp-~~~~lfVTGK 244 (262)
T 3nol_A 177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDV--LNGIAWDK-EHHRLFVTGK 244 (262)
T ss_dssp EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCC--EEEEEEET-TTTEEEEEET
T ss_pred eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCc--eEEEEEcC-CCCEEEEECC
Confidence 7886 776555544688999999999999998876433221 111 122 34999999 5555555543
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.77 E-value=1.2e-06 Score=101.26 Aligned_cols=246 Identities=16% Similarity=0.155 Sum_probs=158.3
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeE-EEEecCcEEEEec-------C
Q 003871 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-------G 524 (790)
Q Consensus 453 g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~-~l~~s~~~l~s~s-------d 524 (790)
+..+++++.|+.+..+|..+++. +|....+.. .....+. ...+.+..++++. +
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~------------~W~~~~~~~-------~~~~~~~~~P~v~~~~v~vg~~~~~~~~~ 177 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKA------------IWSQQTTDP-------AKPYSITGAPRVVKGKVIIGNGGAEYGVR 177 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCE------------EEEEECSCT-------TSSCBCCSCCEEETTEEEECCBCTTTCCB
T ss_pred CCEEEEEcCCCEEEEEECCCCCE------------eeeeccCCC-------CCcceecCCCEEECCEEEEeCCCCCcCCC
Confidence 45688888899999999888765 454322100 0000010 1112344454443 3
Q ss_pred CeEEEEECCCCcEEEEEcCCC---C----------------------------CeEEEEEcCCC-eEEEEeCCC------
Q 003871 525 GKISIFSLETFQTLATFANPP---P----------------------------IATYFILLPQD-LFAFGFDDS------ 566 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~---~----------------------------~v~~l~~s~~g-~l~sgs~dg------ 566 (790)
|.|..+|..+|+.+.++.... . ....+++.|++ .++.++.++
T Consensus 178 g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~ 257 (668)
T 1kv9_A 178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNRE 257 (668)
T ss_dssp CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHH
T ss_pred CEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccC
Confidence 799999999999998875311 0 01246788877 888887765
Q ss_pred -------------cEEEEeCCCCceEEEEcC--CC-------CCEEEEEEeCCCC---EEEEEeCCCcEEEEECCCCcee
Q 003871 567 -------------SILVHCPCTKKTKAKLKG--HQ-------NRITCLAYSLSLN---VLVSSGADAQLCVWDAVGWKKL 621 (790)
Q Consensus 567 -------------~I~iwd~~~~~~~~~l~~--h~-------~~v~~l~~spdg~---~l~s~s~dg~I~vwd~~~~~~~ 621 (790)
.|..+|..+|+.+..++. |. .+.....+..+|+ .++.++.+|.++++|..+|+.+
T Consensus 258 ~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 258 VRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp HHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 399999999998877754 22 2333333344675 6889999999999999998866
Q ss_pred eceeeee------ec--cCC---------C-------C---CCCCeEEEEEeCCCCEEEEE-------------------
Q 003871 622 CSKFLHS------FQ--TGL---------V-------P---ETTIVNHIQFHPDQIHLLSI------------------- 655 (790)
Q Consensus 622 ~~~~l~~------~~--~~~---------~-------~---~~~~v~~i~~sp~~~~l~~~------------------- 655 (790)
....+.. +. .+. . + ....-..++++|+...+++.
T Consensus 338 ~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~ 417 (668)
T 1kv9_A 338 SAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRK 417 (668)
T ss_dssp EEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCS
T ss_pred ccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccccc
Confidence 3222110 00 000 0 0 00001236888887776651
Q ss_pred ------------------eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003871 656 ------------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 717 (790)
Q Consensus 656 ------------------~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~ 717 (790)
.+|.|+.||+.+++.+-+... ..+.....+...+.++++|+.|+.++.||..+|+.+..
T Consensus 418 ~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 418 AFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ 494 (668)
T ss_dssp SCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheE
Confidence 126799999999998766543 23344445566788999999999999999999999988
Q ss_pred ecc
Q 003871 718 INL 720 (790)
Q Consensus 718 ~~~ 720 (790)
+..
T Consensus 495 ~~~ 497 (668)
T 1kv9_A 495 FEA 497 (668)
T ss_dssp EEC
T ss_pred ecC
Confidence 764
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.75 E-value=1.1e-05 Score=81.76 Aligned_cols=228 Identities=15% Similarity=0.079 Sum_probs=142.0
Q ss_pred cEEEEecCCeEEEEECCCCcE-----EEEEcCCCCCeEEEEEcCCC-e-EEEEeCCCcEEEEeCCCCceEEEEcCCCCCE
Q 003871 517 SHLFSASGGKISIFSLETFQT-----LATFANPPPIATYFILLPQD-L-FAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 589 (790)
Q Consensus 517 ~~l~s~sdg~I~vwd~~~~~~-----~~~~~~~~~~v~~l~~s~~g-~-l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v 589 (790)
.+|+.+..+.|+.+++..... ...+......+..++|++++ . +++-..++.|..++...+.....+.......
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 456666656888888875432 11122122346789999976 4 4455567899999987655433333333568
Q ss_pred EEEEEeCCCCEEEE-EeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--e--CCcEEEEE
Q 003871 590 TCLAYSLSLNVLVS-SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H--EGQIDVYE 664 (790)
Q Consensus 590 ~~l~~spdg~~l~s-~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~--dg~I~iwd 664 (790)
..++++|++..++. -...+.|.++++..... ..+ ...+. .....++++|++..|+.+ . .+.|..++
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~---~~~--~~~~~----~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~ 152 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---RVL--FDTGL----VNPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEE--ECSSC----SSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCE---EEE--EECCC----CCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence 89999997655554 44567899999875321 111 11121 356899999976666653 2 46788888
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecC
Q 003871 665 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 743 (790)
Q Consensus 665 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~ 743 (790)
+. +.....+... .......++++++++.|+.+. ..+.|.++|..+......+.. + . .+.+++..
T Consensus 153 ~d-g~~~~~~~~~-~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~------~--~---~P~gi~~d-- 217 (267)
T 1npe_A 153 MD-GTNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG------L--Q---YPFAVTSY-- 217 (267)
T ss_dssp TT-SCCCEEEECT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC------C--C---SEEEEEEE--
T ss_pred cC-CCCcEEEEEC-CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC------C--C---CceEEEEe--
Confidence 85 3333333211 245688999999887766554 468999999986554333221 1 1 13356543
Q ss_pred CCCEEEEEeCCCcEEEEecCCCccc
Q 003871 744 EPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 744 d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
++..+++...++.|.+++..+++..
T Consensus 218 ~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 218 GKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCEEEEEECCCCeEEEEeCCCCCce
Confidence 3444555556689999999888654
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.73 E-value=3.2e-06 Score=95.68 Aligned_cols=245 Identities=12% Similarity=0.089 Sum_probs=151.7
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeE-EEEecCcEEEEec-------C
Q 003871 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-------G 524 (790)
Q Consensus 453 g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~-~l~~s~~~l~s~s-------d 524 (790)
+..+++++.|+.+..+|..+++. +|....+... ....+. +....+..+++++ +
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~------------~W~~~~~~~~-------~~~~~~~~P~v~~g~v~vg~~~~~~~~~ 175 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKI------------NWEVEVCDPK-------VGSTLTQAPFVAKDTVLMGCSGAELGVR 175 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE------------EEEEECCCGG-------GTCBCCSCCEEETTEEEEECBCGGGTCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCE------------EEEecCCCCC-------ccceeccCCEEECCEEEEEecCCccCCC
Confidence 55688888899999999887665 4542211100 000111 1112333444433 5
Q ss_pred CeEEEEECCCCcEEEEEcCCCCC-------------------------------------e-EEEEEcCCC-eEEEEeCC
Q 003871 525 GKISIFSLETFQTLATFANPPPI-------------------------------------A-TYFILLPQD-LFAFGFDD 565 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~-------------------------------------v-~~l~~s~~g-~l~sgs~d 565 (790)
+.|..+|..+|+.+.++...... + ..+++.++. .++.++.+
T Consensus 176 g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~ 255 (571)
T 2ad6_A 176 GAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGN 255 (571)
T ss_dssp CEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCC
T ss_pred CEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCC
Confidence 89999999999999887532211 0 135666766 66665532
Q ss_pred ----------------CcEEEEeCCCCceEEEEcC--CC--------CCEEEEEEeCCCC---EEEEEeCCCcEEEEECC
Q 003871 566 ----------------SSILVHCPCTKKTKAKLKG--HQ--------NRITCLAYSLSLN---VLVSSGADAQLCVWDAV 616 (790)
Q Consensus 566 ----------------g~I~iwd~~~~~~~~~l~~--h~--------~~v~~l~~spdg~---~l~s~s~dg~I~vwd~~ 616 (790)
+.|..+|..+|+.+..++. |. .++. +...++|+ .++.++.+|.+.++|..
T Consensus 256 ~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 334 (571)
T 2ad6_A 256 PAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRE 334 (571)
T ss_dssp CSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred CccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECC
Confidence 3599999999998877653 21 1221 22234774 57788999999999999
Q ss_pred CCceeeceeeee-e--------ccCC-------------C-----C---CCCCeEEEEEeCCCCEEEEE-e---------
Q 003871 617 GWKKLCSKFLHS-F--------QTGL-------------V-----P---ETTIVNHIQFHPDQIHLLSI-H--------- 656 (790)
Q Consensus 617 ~~~~~~~~~l~~-~--------~~~~-------------~-----~---~~~~v~~i~~sp~~~~l~~~-~--------- 656 (790)
+|+.+....+.. . ..+. . | ....-..++++|+...+++. .
T Consensus 335 tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~ 414 (571)
T 2ad6_A 335 NGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPF 414 (571)
T ss_dssp TCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC
T ss_pred CCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccc
Confidence 987655433210 0 0000 0 0 00001346888887777763 2
Q ss_pred ----------------------------CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 657 ----------------------------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 657 ----------------------------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
++.|+.||..+++.+-++.. ...+....+...+..++.++.||.|+.||
T Consensus 415 ~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 415 MLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE---KFAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp CCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred ccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC---CCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 36799999999998776643 22333333444567788899999999999
Q ss_pred CCCCeEEEEecc
Q 003871 709 TSTLELRCQINL 720 (790)
Q Consensus 709 ~~~~~~~~~~~~ 720 (790)
..+|+.+..+..
T Consensus 492 ~~tG~~lw~~~~ 503 (571)
T 2ad6_A 492 NKDGKELWNFKM 503 (571)
T ss_dssp TTTCCEEEEEEC
T ss_pred CCCCCEEEEEeC
Confidence 999999988764
No 248
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.73 E-value=7.6e-07 Score=87.83 Aligned_cols=196 Identities=11% Similarity=-0.018 Sum_probs=128.1
Q ss_pred cEEEEEcCCCC--CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCE--EEEEEeCCCCEEEEEeCCCcE
Q 003871 536 QTLATFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI--TCLAYSLSLNVLVSSGADAQL 610 (790)
Q Consensus 536 ~~~~~~~~~~~--~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v--~~l~~spdg~~l~s~s~dg~I 610 (790)
+.+.++. |.. -...+.|+ ++ +..+.+.+|.|+++|+.+++.+..+ -. ... -.+++.. ++..+..-.++.+
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEE
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEE
Confidence 4455553 433 34678887 36 7778888889999999999988776 22 233 3355543 2444445568899
Q ss_pred EEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCC---CCeEEE
Q 003871 611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITYA 686 (790)
Q Consensus 611 ~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~---~~v~~l 686 (790)
.+||..+.+.+.. ++... .-..+ ++|++.|+.+ .++.|+++|..+.+.+.++....+. ..++.+
T Consensus 119 ~V~D~~Tl~~~~t-----i~~~~-----eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeL 186 (268)
T 3nok_A 119 FTWSGMPPQRERT-----TRYSG-----EGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINEL 186 (268)
T ss_dssp EEEETTTTEEEEE-----EECSS-----CCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEEECCcCcEEEE-----EeCCC-----ceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccccc
Confidence 9999999665433 32221 11233 3567888876 5888999999999998887653322 245677
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCC----CC-cccccceEEEEEecCCCCEEEEE
Q 003871 687 TYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP----GT-ISLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 687 ~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~----gh-~~~~v~~~~v~~sp~d~~~las~ 751 (790)
.|. +|+..+..-.++.|.+.|..+|+.+..+......+. .+ .... ...+||+|..+++++||
T Consensus 187 e~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~v--lNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 187 ECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAV--LNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCC--EEEEEECTTTCCEEEEE
T ss_pred EEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCc--eEEEEEcCCCCEEEEeC
Confidence 877 776554444678999999999999998875432110 11 1122 34999999555566665
No 249
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=2.3e-05 Score=92.82 Aligned_cols=332 Identities=11% Similarity=0.005 Sum_probs=195.9
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeec-----------cCCCCCCceEEEEEcCCC
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLL-----------PDNSFGGRVVRLIYSHSG 453 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l-----------~~~~h~~~V~~l~~spdg 453 (790)
.++... ++|... .|+..+-+.+++... .....+.. +..-....|.++...++|
T Consensus 261 ~~i~~d-------~~g~lW-----igt~~~Gl~~~~~~~----~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g 324 (781)
T 3v9f_A 261 FSIKQL-------KDNKLW-----IATELNGIMILDLQQ----NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN 324 (781)
T ss_dssp EEEEEC-------TTSEEE-----EEESSSCEEEEETTC----C---------CEEECBCSSTTSBSSSCEEEEEECSSC
T ss_pred EEEEEC-------CCCCEE-----EEeCCCCeEEECCCC----CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC
Confidence 666664 566644 455545677888753 22221110 001235679999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEec-CCeEEEEE
Q 003871 454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFS 531 (790)
Q Consensus 454 ~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd 531 (790)
. |-.|+.++-|..++...... ..+...... .....-....|.++... ...|..|+ ++.|..|+
T Consensus 325 ~-lWigt~~~Gl~~~~~~~~~~-----------~~~~~~~~~---~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 325 N-IWIGTWGGGINFISNAPPTF-----------HTWSYSPTQ---MNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFE 389 (781)
T ss_dssp C-EEEEEBSSCEEEECSSCCSC-----------EEEC----C---CCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEE
T ss_pred C-EEEEecCCeEEEeCCCCCcc-----------eeeccCccc---cccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEE
Confidence 7 66677667788887654322 000000000 00000134568888888 45566666 67788999
Q ss_pred CCCCcEEEEE---cCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEc---CCCCCEEEEEEeCCCCEEEEEe
Q 003871 532 LETFQTLATF---ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSLNVLVSSG 605 (790)
Q Consensus 532 ~~~~~~~~~~---~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~---~h~~~v~~l~~spdg~~l~s~s 605 (790)
..++...... ......|.++...++|.|.+|+.++-+..+|..+++.. .+. .....|.++...++|++.+ |+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwi-gt 467 (781)
T 3v9f_A 390 NGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWI-GT 467 (781)
T ss_dssp TTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEE-EE
T ss_pred CCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEE-EE
Confidence 8754332211 12345688888887776666787778999998877543 332 1346799998888876544 55
Q ss_pred CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCC--CCCCe
Q 003871 606 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK--MDLPI 683 (790)
Q Consensus 606 ~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~--h~~~v 683 (790)
. +-+..||..+++... +.... ........|.++...++|.+.+...++.+..||..+++. ..+.... ....|
T Consensus 468 ~-~Gl~~~~~~~~~~~~---~~~~~-~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i 541 (781)
T 3v9f_A 468 H-AGVFVIDLASKKVIH---HYDTS-NSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTI 541 (781)
T ss_dssp T-TEEEEEESSSSSCCE---EECTT-TSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCE
T ss_pred C-CceEEEeCCCCeEEe---cccCc-ccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCee
Confidence 5 568899988754321 11011 000001478999999999877766656688899876543 3332211 14578
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 684 TYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 684 ~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
.++..+++|++.++ +.+|.|..||..+++.. .+.... |-....+. ++...+ +|.+.++ +.+| |..+++.
T Consensus 542 ~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~~-~~~~~~----gl~~~~i~--~i~~d~-~g~lW~~-t~~G-l~~~~~~ 610 (781)
T 3v9f_A 542 NQIYRSSKGQMWLA-TGEGLVCFPSARNFDYQ-VFQRKE----GLPNTHIR--AISEDK-NGNIWAS-TNTG-ISCYITS 610 (781)
T ss_dssp EEEEECTTSCEEEE-ETTEEEEESCTTTCCCE-EECGGG----TCSCCCCC--EEEECS-SSCEEEE-CSSC-EEEEETT
T ss_pred EEEEECCCCCEEEE-ECCCceEEECCCCCcEE-EccccC----CCCCceEE--EEEECC-CCCEEEE-cCCc-eEEEECC
Confidence 99999999886554 44666589998887643 232211 22233566 788877 6776555 3444 7777776
Q ss_pred CCc
Q 003871 764 ESE 766 (790)
Q Consensus 764 ~~~ 766 (790)
+++
T Consensus 611 ~~~ 613 (781)
T 3v9f_A 611 KKC 613 (781)
T ss_dssp TTE
T ss_pred CCc
Confidence 543
No 250
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.71 E-value=5.1e-06 Score=83.03 Aligned_cols=201 Identities=12% Similarity=0.044 Sum_probs=132.0
Q ss_pred CceEEEEEcCCCCEEEEEeC--CCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecCcEE
Q 003871 442 GRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 519 (790)
Q Consensus 442 ~~V~~l~~spdg~~l~s~~~--dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~l 519 (790)
.....++|+|||...++.+. ++.|.+.|..++.. ...... +.......+++.++.+
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v---------------------~~~i~l-~~~~fgeGi~~~g~~l 78 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV---------------------ENIHKM-DDSYFGEGLTLLNEKL 78 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE---------------------EEEEEC-CTTCCEEEEEEETTEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE---------------------EEEEec-CCCcceEEEEEeCCEE
Confidence 44689999999754444333 57899888776543 222111 1122233566666566
Q ss_pred EEec--CCeEEEEECCCCcEEEEEcCC-CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCCC-----CCEE
Q 003871 520 FSAS--GGKISIFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----NRIT 590 (790)
Q Consensus 520 ~s~s--dg~I~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-----~~v~ 590 (790)
+.+. ++.+.++|..+++.+.++... ..+ ..+++|| .++++..++.|.++|..+.+.+..+.-.. ..++
T Consensus 79 yv~t~~~~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 79 YQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp EEEETTCSEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEecCCEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 6555 799999999999999988643 222 3355688 66666678899999999988887775321 2477
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeecc----CCCCCCCCeEEEEEeCCCCEEEE-E-eCCcEEEEE
Q 003871 591 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT----GLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYE 664 (790)
Q Consensus 591 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~----~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~I~iwd 664 (790)
.+.|. +|...+....++.|.+.|..+++......+..+.. ...+.......|+|+|+++.+++ + ..+.+...+
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 88888 77655655568899999999987654433321100 00000135689999999987776 4 567788887
Q ss_pred CCCC
Q 003871 665 APTL 668 (790)
Q Consensus 665 ~~~~ 668 (790)
+...
T Consensus 235 l~~~ 238 (266)
T 2iwa_A 235 LHLV 238 (266)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 7543
No 251
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.71 E-value=3.5e-06 Score=95.22 Aligned_cols=251 Identities=14% Similarity=0.162 Sum_probs=153.0
Q ss_pred EEEcCCCCE----EEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeE-EEEecCcEEEE
Q 003871 447 LIYSHSGDF----LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFS 521 (790)
Q Consensus 447 l~~spdg~~----l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~-~l~~s~~~l~s 521 (790)
++++|.+.. +++++.|+.+..+|..+++. +|....+... ....+. ...+.+..+++
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~------------~W~~~~~~~~-------~~~~~~ssP~v~~g~V~v 171 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGET------------VWKVENSDIK-------VGSTLTIAPYVVKDKVII 171 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCE------------EEEEECCCGG-------GTCBCCSCCEEETTEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCE------------EEeecCCCCC-------ccceeecCCEEECCEEEE
Confidence 455554444 88888899999999887765 4543211100 000111 11123334444
Q ss_pred ec-------CCeEEEEECCCCcEEEEEcCCCCC-------------------------------------e-EEEEEcCC
Q 003871 522 AS-------GGKISIFSLETFQTLATFANPPPI-------------------------------------A-TYFILLPQ 556 (790)
Q Consensus 522 ~s-------dg~I~vwd~~~~~~~~~~~~~~~~-------------------------------------v-~~l~~s~~ 556 (790)
++ +|.|..+|..+|+.+.++...... + ...++.++
T Consensus 172 g~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~ 251 (599)
T 1w6s_A 172 GSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG 251 (599)
T ss_dssp CCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT
T ss_pred EecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCC
Confidence 43 689999999999999887633211 0 13456666
Q ss_pred C-eEEEEeCC----------------CcEEEEeCCCCceEEEEcC--CC--------CCEEEEEEe-CCC---CEEEEEe
Q 003871 557 D-LFAFGFDD----------------SSILVHCPCTKKTKAKLKG--HQ--------NRITCLAYS-LSL---NVLVSSG 605 (790)
Q Consensus 557 g-~l~sgs~d----------------g~I~iwd~~~~~~~~~l~~--h~--------~~v~~l~~s-pdg---~~l~s~s 605 (790)
. .++.++.+ +.|.-+|.++|+.+..++. |. .++. +... .+| +.++.++
T Consensus 252 ~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~ 330 (599)
T 1w6s_A 252 TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD 330 (599)
T ss_dssp TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC
T ss_pred CCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC
Confidence 6 77777655 3799999999998877654 21 1121 2222 567 4677789
Q ss_pred CCCcEEEEECCCCceeeceeeee-------e--ccCC-------------C-----C---CCCCeEEEEEeCCCCEEEEE
Q 003871 606 ADAQLCVWDAVGWKKLCSKFLHS-------F--QTGL-------------V-----P---ETTIVNHIQFHPDQIHLLSI 655 (790)
Q Consensus 606 ~dg~I~vwd~~~~~~~~~~~l~~-------~--~~~~-------------~-----~---~~~~v~~i~~sp~~~~l~~~ 655 (790)
.+|.+.++|.++|+.+....+.. + ..+. . | ....-..++++|+..++++.
T Consensus 331 ~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~ 410 (599)
T 1w6s_A 331 RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMG 410 (599)
T ss_dssp TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEE
T ss_pred CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEe
Confidence 99999999999988765433210 0 0000 0 0 00011246777776665541
Q ss_pred ----------------------------------------eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEE
Q 003871 656 ----------------------------------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI 695 (790)
Q Consensus 656 ----------------------------------------~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 695 (790)
..|.+.-||+.+++.+-+... ..+...-.....+..+
T Consensus 411 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagg~v 487 (599)
T 1w6s_A 411 INHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME---RFAVWGGTMATAGDLV 487 (599)
T ss_dssp EECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEE
T ss_pred ccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC---CCCccCcceEecCCEE
Confidence 235788899999887665532 1222222233467788
Q ss_pred EEEEcCCeEEEEECCCCeEEEEecc
Q 003871 696 YVSCKSGHVKVFDTSTLELRCQINL 720 (790)
Q Consensus 696 ~sgs~dg~i~vwd~~~~~~~~~~~~ 720 (790)
+.++.|+.++.||.++|+++-.+..
T Consensus 488 f~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 488 FYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEECCCCeEEEEECCCCCEEEEeeC
Confidence 8899999999999999999988763
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.71 E-value=4.2e-06 Score=94.58 Aligned_cols=291 Identities=12% Similarity=0.046 Sum_probs=170.9
Q ss_pred CCEEEEEeC-CCcEEEEec-CCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEe--c-Cc---EEEEec-
Q 003871 453 GDFLVALTQ-TATHKLWKW-QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R-GS---HLFSAS- 523 (790)
Q Consensus 453 g~~l~s~~~-dg~i~vw~~-~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~--s-~~---~l~s~s- 523 (790)
+..+++++. ++.+.-+|. .+++. +|....+.................+++ . +. +++.++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~------------lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~ 129 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTI------------LWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL 129 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSE------------EEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcE------------EEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence 445777777 788888888 66655 454332211000000000000112344 4 33 256665
Q ss_pred CCeEEEEECCCCcEEEEEcCCCC----CeE-EEEEcCCCeEEEEe------CCCcEEEEeCCCCceEEEEcCCCCC----
Q 003871 524 GGKISIFSLETFQTLATFANPPP----IAT-YFILLPQDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQNR---- 588 (790)
Q Consensus 524 dg~I~vwd~~~~~~~~~~~~~~~----~v~-~l~~s~~g~l~sgs------~dg~I~iwd~~~~~~~~~l~~h~~~---- 588 (790)
|+.+..+|..+|+.+.+...... .+. ...+ .++.+++++ .+|.|+-+|..+|+.+..+......
T Consensus 130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~ 208 (599)
T 1w6s_A 130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL 208 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred CCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc
Confidence 89999999999999887753320 121 1112 145555554 3799999999999988776532110
Q ss_pred ---------------------------------E-EEEEEeCCCCEEEEEeCC----------------CcEEEEECCCC
Q 003871 589 ---------------------------------I-TCLAYSLSLNVLVSSGAD----------------AQLCVWDAVGW 618 (790)
Q Consensus 589 ---------------------------------v-~~l~~spdg~~l~s~s~d----------------g~I~vwd~~~~ 618 (790)
+ ..+++.++...++.+..+ +.|..+|.++|
T Consensus 209 ~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG 288 (599)
T 1w6s_A 209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG 288 (599)
T ss_dssp BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC
T ss_pred cccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCC
Confidence 0 134667777787777665 37999999998
Q ss_pred ceeeceeeeeeccCCCC-----CCCCeEEEEEe-CCC---CEEEEE-eCCcEEEEECCCCceeeeecCCC----------
Q 003871 619 KKLCSKFLHSFQTGLVP-----ETTIVNHIQFH-PDQ---IHLLSI-HEGQIDVYEAPTLNHTSQLVPDK---------- 678 (790)
Q Consensus 619 ~~~~~~~l~~~~~~~~~-----~~~~v~~i~~s-p~~---~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~---------- 678 (790)
+........ .|.. ...++. +... .+| ..++.+ .+|.++++|..+|+.+-......
T Consensus 289 ~~~W~~q~~----~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 363 (599)
T 1w6s_A 289 EAKFGYQKT----PHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL 363 (599)
T ss_dssp CEEEEEESS----TTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred ceeeEeecC----CCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc
Confidence 765432221 1110 001121 2222 567 345544 88999999999999876553211
Q ss_pred -CCCCe--------------------------EEEEEecCCCEEEEEE--------------------------------
Q 003871 679 -MDLPI--------------------------TYATYSCDGKCIYVSC-------------------------------- 699 (790)
Q Consensus 679 -h~~~v--------------------------~~l~~s~dg~~l~sgs-------------------------------- 699 (790)
...++ ..++++|+.+++++..
T Consensus 364 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~ 443 (599)
T 1w6s_A 364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK 443 (599)
T ss_dssp TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred CCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCc
Confidence 01111 2467788777665532
Q ss_pred -------cCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCccccccC
Q 003871 700 -------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 772 (790)
Q Consensus 700 -------~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w~~~ 772 (790)
.+|.|..||+.+|+.+-...... ....-.++ . .+..++.++.||.++.||..+|+..|...
T Consensus 444 ~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~---------~~~~g~~~--t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 444 GDRQNYEGLGQIKAYNAITGDYKWEKMERF---------AVWGGTMA--T-AGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp SBTTTTBCCEEEEEECTTTCCEEEEEEESS---------CCCSBCEE--E-TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCcccCCCcCeEEEEECCCCCEEeEecCCC---------CccCcceE--e-cCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 34789999999998876654210 11100111 1 46778889999999999999999999764
Q ss_pred C
Q 003871 773 P 773 (790)
Q Consensus 773 ~ 773 (790)
.
T Consensus 512 l 512 (599)
T 1w6s_A 512 I 512 (599)
T ss_dssp C
T ss_pred C
Confidence 3
No 253
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.70 E-value=1.5e-06 Score=95.70 Aligned_cols=221 Identities=14% Similarity=0.075 Sum_probs=149.7
Q ss_pred EEEec-CCeEEEEECCCCcEEEEEcC---------------------------------C------CCCeEEEEEcC---
Q 003871 519 LFSAS-GGKISIFSLETFQTLATFAN---------------------------------P------PPIATYFILLP--- 555 (790)
Q Consensus 519 l~s~s-dg~I~vwd~~~~~~~~~~~~---------------------------------~------~~~v~~l~~s~--- 555 (790)
+.+|+ .|.++++-+.+++.++.+.- + .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 45566 78999999888877765410 0 11222345555
Q ss_pred --CC-eEEEEe-CCCcEEEEeCCCCceEEEEcC-CCCCEEEEEE-e-CCCCEEEEEe------------------CCCcE
Q 003871 556 --QD-LFAFGF-DDSSILVHCPCTKKTKAKLKG-HQNRITCLAY-S-LSLNVLVSSG------------------ADAQL 610 (790)
Q Consensus 556 --~g-~l~sgs-~dg~I~iwd~~~~~~~~~l~~-h~~~v~~l~~-s-pdg~~l~s~s------------------~dg~I 610 (790)
|| ++++.. .++.|.+.|+.+.++.+.+.- ....+..+++ + |+++++++++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 77 555544 456799999999998875532 2345888888 5 9999998885 24579
Q ss_pred EEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eC--------------------------------
Q 003871 611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-------------------------------- 657 (790)
Q Consensus 611 ~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d-------------------------------- 657 (790)
.+.|..+.+.... +.-+ +....++++|+|++++++ .+
T Consensus 178 tvID~~t~~v~~q-----I~Vg-----g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 178 TAVDADKWEVAWQ-----VLVS-----GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp EEEETTTTEEEEE-----EEES-----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EEEECCCCeEEEE-----EEeC-----CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 9999998554332 3322 223567899999999884 22
Q ss_pred ------CcEEEEECCC--Cce-eeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCe------------EE
Q 003871 658 ------GQIDVYEAPT--LNH-TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLE------------LR 715 (790)
Q Consensus 658 ------g~I~iwd~~~--~~~-~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~~~~------------~~ 715 (790)
+.|.+.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ ..
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipv---g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~ 324 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 324 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEec---CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence 1377778776 444 444433 34567899999999887666 57899999999653 22
Q ss_pred EEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 716 CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 716 ~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
.... .| . .+..++|+| +|...++.--|+.|.+|++.+
T Consensus 325 ~~v~------vG--~---gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 325 AEPE------LG--L---GPLHTAFDG-RGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp ECCB------CC--S---CEEEEEECT-TSEEEEEETTTTEEEEEEHHH
T ss_pred EEcC------CC--C---CcceEEECC-CCeEEEEEecCCcEEEEEhhH
Confidence 2222 12 1 266899999 785455667899999999977
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.68 E-value=2.6e-06 Score=83.97 Aligned_cols=184 Identities=10% Similarity=0.081 Sum_probs=124.1
Q ss_pred CCCeEEEEec-CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeE--EEEEcCCCeEEEEeCCCcEEEEeCCCCceEEE
Q 003871 506 KDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT--YFILLPQDLFAFGFDDSSILVHCPCTKKTKAK 581 (790)
Q Consensus 506 ~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~--~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~ 581 (790)
..-...+.|+ +.+.++++ +|.|+++|+++++.+.++ -. .... .+++..+-..+..-.++.+.+||..+.+.+.+
T Consensus 54 ~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 54 NAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp TCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred ccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 3445788899 55555555 789999999999988887 22 2332 34443322444455788999999999999988
Q ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcE
Q 003871 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 660 (790)
Q Consensus 582 l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I 660 (790)
+.... . ...+++|++.|+.+..++.|.++|..+.+......+..-.... ..++.+.|. +|+..+.. .++.|
T Consensus 132 i~~~~-e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v----~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 132 TRYSG-E--GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV----ELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp EECSS-C--CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC----CCEEEEEEE-TTEEEEEETTCSEE
T ss_pred EeCCC-c--eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc----ccccccEEe-CCEEEEEECCCCeE
Confidence 87422 2 2334467888888777899999999997655443333111111 245677777 67655445 67899
Q ss_pred EEEECCCCceeeeecCC-----------CCCCCeEEEEEecCCCEEEEEE
Q 003871 661 DVYEAPTLNHTSQLVPD-----------KMDLPITYATYSCDGKCIYVSC 699 (790)
Q Consensus 661 ~iwd~~~~~~~~~~~~~-----------~h~~~v~~l~~s~dg~~l~sgs 699 (790)
.+.|..+++.+..+... ......+.+||+|+++.|+..+
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999999998877532 1124678999999876555544
No 255
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.68 E-value=6.5e-05 Score=88.84 Aligned_cols=311 Identities=12% Similarity=0.021 Sum_probs=186.7
Q ss_pred eeccCCCceEeeeccccCCCCceeeeec------cCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccc
Q 003871 408 VCAKSLEKSVNLKLQLINEPSECRTLLL------PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 481 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~~~~~~~~~~l------~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~ 481 (790)
-.|+.++-|..++.. ......+.. +..-....|.++...++|+ |..|+.++-+..|+..+...
T Consensus 327 Wigt~~~Gl~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~------ 395 (781)
T 3v9f_A 327 WIGTWGGGINFISNA----PPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA------ 395 (781)
T ss_dssp EEEEBSSCEEEECSS----CCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE------
T ss_pred EEEecCCeEEEeCCC----CCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE------
Confidence 566666778888875 233333221 0111346799999999887 56677666688887654211
Q ss_pred cccccccccCCCceeeeecc-cCCCCCCeEEEEec-CcEEEEec-CCeEEEEECCCCcEEEEEc---CCCCCeEEEEEcC
Q 003871 482 VNMESQLYQPSSKLVMTNDI-AADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA---NPPPIATYFILLP 555 (790)
Q Consensus 482 ~~~~~~i~~~~~~~~~~~~~-~~~~~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~---~~~~~v~~l~~s~ 555 (790)
..... .......|.++... ...|..|+ ++.+..++..+++.. .+. .....|.++...+
T Consensus 396 ---------------~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~ 459 (781)
T 3v9f_A 396 ---------------IYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDK 459 (781)
T ss_dssp ---------------ECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECT
T ss_pred ---------------EEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECC
Confidence 00000 01245678888887 55555566 678999998876543 332 1345788998888
Q ss_pred CCeEEEEeCCCcEEEEeCCCCceEEEEcCC-----CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeec
Q 003871 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGH-----QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630 (790)
Q Consensus 556 ~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h-----~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~ 630 (790)
+|.+..|+. +-+..+|..+++........ ...|.++...++|++.+ |+.++-+..||..+++... +.
T Consensus 460 ~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~------~~ 531 (781)
T 3v9f_A 460 NKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRK------FN 531 (781)
T ss_dssp TSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEE------EC
T ss_pred CCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEE------cc
Confidence 885555666 56899998877654332222 35799999999887655 4544457779987743211 11
Q ss_pred cCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCC--CCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 003871 631 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFD 708 (790)
Q Consensus 631 ~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd 708 (790)
....-....|.++...++|.+.++..+|.+..||..+++. ..+... -....|.++..+++|++.++ +.+| |..++
T Consensus 532 ~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~ 608 (781)
T 3v9f_A 532 QYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYI 608 (781)
T ss_dssp TTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEE
T ss_pred CCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEE
Confidence 1111011578999999999876665655449999876653 333211 11346888999888876554 4455 77889
Q ss_pred CCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 709 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
..+++.. .+.... |-.......-++...+ +|.+++ |+.+| +..+++..
T Consensus 609 ~~~~~~~-~~~~~d----Gl~~~~f~~~~~~~~~-~G~l~~-g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 609 TSKKCFY-TYDHSN----NIPQGSFISGCVTKDH-NGLIYF-GSING-LCFFNPDI 656 (781)
T ss_dssp TTTTEEE-EECGGG----TCCSSCEEEEEEEECT-TSCEEE-EETTE-EEEECSCC
T ss_pred CCCCceE-EecccC----CccccccccCceEECC-CCEEEE-ECCCc-eEEEChhh
Confidence 8877643 332111 2112222222566666 676555 55666 66677654
No 256
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.66 E-value=1.1e-05 Score=91.36 Aligned_cols=244 Identities=12% Similarity=0.093 Sum_probs=149.7
Q ss_pred EecCcEEEEec-CCeEEEEECCCCcEEEEEcCCCC----Ce-EEEEEcCC---C--eEEEEe------CCCcEEEEeCCC
Q 003871 513 ALRGSHLFSAS-GGKISIFSLETFQTLATFANPPP----IA-TYFILLPQ---D--LFAFGF------DDSSILVHCPCT 575 (790)
Q Consensus 513 ~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~----~v-~~l~~s~~---g--~l~sgs------~dg~I~iwd~~~ 575 (790)
++.+..++.++ ++.|..+|..+|+.+.++..... .+ ....+..+ | .+++++ .++.|+-+|..+
T Consensus 114 a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t 193 (582)
T 1flg_A 114 AIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT 193 (582)
T ss_dssp EEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred EEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence 34555666666 99999999999999988753321 11 11111222 3 566654 378999999999
Q ss_pred CceEEEEcCCCCCE-----------------------------------------EEEEEeCCCCEEEEEeC--------
Q 003871 576 KKTKAKLKGHQNRI-----------------------------------------TCLAYSLSLNVLVSSGA-------- 606 (790)
Q Consensus 576 ~~~~~~l~~h~~~v-----------------------------------------~~l~~spdg~~l~s~s~-------- 606 (790)
|+.+.........+ ..++++|+...++.+..
T Consensus 194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~ 273 (582)
T 1flg_A 194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW 273 (582)
T ss_dssp CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence 98876553211000 13566777777776653
Q ss_pred ------------C----CcEEEEECCCCceeeceeeeeeccCCCC-----CCCCeEEEEEe-CCCC---EEEEE-eCCcE
Q 003871 607 ------------D----AQLCVWDAVGWKKLCSKFLHSFQTGLVP-----ETTIVNHIQFH-PDQI---HLLSI-HEGQI 660 (790)
Q Consensus 607 ------------d----g~I~vwd~~~~~~~~~~~l~~~~~~~~~-----~~~~v~~i~~s-p~~~---~l~~~-~dg~I 660 (790)
| +.|..+|.++|+........ .|.. ...++. +... .+|+ .++.+ .+|.+
T Consensus 274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~----~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l 348 (582)
T 1flg_A 274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHT----PNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFF 348 (582)
T ss_dssp GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESS----TTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEE
T ss_pred ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCC----CCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceE
Confidence 2 58999999998865432221 1110 001221 2222 4674 45554 88999
Q ss_pred EEEECCCCceeeeecCCCC-----------CCC--------------------------------eEEEEEecCCCEEEE
Q 003871 661 DVYEAPTLNHTSQLVPDKM-----------DLP--------------------------------ITYATYSCDGKCIYV 697 (790)
Q Consensus 661 ~iwd~~~~~~~~~~~~~~h-----------~~~--------------------------------v~~l~~s~dg~~l~s 697 (790)
+++|..+|+.+-.+..... ..+ -..++++|+...+++
T Consensus 349 ~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv 428 (582)
T 1flg_A 349 YVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYV 428 (582)
T ss_dssp EEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEE
T ss_pred EEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEE
Confidence 9999999998765543210 000 013567776665554
Q ss_pred EE---------------------------------cCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCC
Q 003871 698 SC---------------------------------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 744 (790)
Q Consensus 698 gs---------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d 744 (790)
.. .+|.|+.||+.+|+.+-...... .+..-.++ . .
T Consensus 429 ~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~---------~~~~g~~~--t-a 496 (582)
T 1flg_A 429 PANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL---------PLWAGVLA--T-A 496 (582)
T ss_dssp EEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS---------CCCSCCEE--E-T
T ss_pred echhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC---------CCcccceE--e-C
Confidence 33 25889999999999876654211 11100111 1 3
Q ss_pred CCEEEEEeCCCcEEEEecCCCccccccCC
Q 003871 745 PNRIALGLTNGRVHVIEPLESEVEWGKLP 773 (790)
Q Consensus 745 ~~~las~s~Dg~i~iW~~~~~~~~w~~~~ 773 (790)
+.+++.++.||.++.||..+|+..|....
T Consensus 497 gglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 497 GNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 56788899999999999999999997644
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.65 E-value=3.3e-06 Score=83.35 Aligned_cols=184 Identities=12% Similarity=0.035 Sum_probs=124.1
Q ss_pred CeEEEEec-CcEEEEec-CC--eEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCCCcEEEEeCCCCceEEE
Q 003871 508 SISCFALR-GSHLFSAS-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAK 581 (790)
Q Consensus 508 ~V~~l~~s-~~~l~s~s-dg--~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~-sgs~dg~I~iwd~~~~~~~~~ 581 (790)
-...+.|+ +.+..+++ +| .|+++|+++++.+.++..... .....+.+++ .+. ..-.++.+.+||..+.+.+.+
T Consensus 44 ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred ccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 34788888 65555555 55 899999999999998864433 3232233345 444 344688999999999999988
Q ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcE
Q 003871 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 660 (790)
Q Consensus 582 l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I 660 (790)
+.... ....+++|++.|+.+..++.|.++|..+.+......+. ..+.. ...++.+.|. +|+..+.. .++.|
T Consensus 123 i~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~--~~g~~--~~~lNELe~~-~G~lyan~w~~~~I 194 (262)
T 3nol_A 123 FNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT--AHGEE--LPELNELEWV-DGEIFANVWQTNKI 194 (262)
T ss_dssp EECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE--ETTEE--CCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec--cCCcc--ccccceeEEE-CCEEEEEEccCCeE
Confidence 87422 22344567777777666788999999986654433332 11111 0245567776 67655445 67899
Q ss_pred EEEECCCCceeeeecCCC----------CCCCeEEEEEecCCCEEEEEEc
Q 003871 661 DVYEAPTLNHTSQLVPDK----------MDLPITYATYSCDGKCIYVSCK 700 (790)
Q Consensus 661 ~iwd~~~~~~~~~~~~~~----------h~~~v~~l~~s~dg~~l~sgs~ 700 (790)
.+.|..+++.+..+.... .....+.+||+|+++.|+..+.
T Consensus 195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 999999999988875421 1235689999999887776664
No 258
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.63 E-value=1.2e-05 Score=78.66 Aligned_cols=197 Identities=12% Similarity=0.027 Sum_probs=126.8
Q ss_pred cEEEEEcCCCC--CeEEEEEcCCC-eEEEEeCC--CcEEEEeCCCCceEEEEcCCCCC-EEEEEEeCCCCEE-EEEeCCC
Q 003871 536 QTLATFANPPP--IATYFILLPQD-LFAFGFDD--SSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVL-VSSGADA 608 (790)
Q Consensus 536 ~~~~~~~~~~~--~v~~l~~s~~g-~l~sgs~d--g~I~iwd~~~~~~~~~l~~h~~~-v~~l~~spdg~~l-~s~s~dg 608 (790)
+.+.++ .|.. -...+.|++ + +..+.+.+ +.|+.+|+.+++.+..+...... --.++.. ++.| +..-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCC
Confidence 455666 3543 356888886 6 55566665 48999999999998887543221 1234443 4444 4445688
Q ss_pred cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCC---CCeE
Q 003871 609 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPIT 684 (790)
Q Consensus 609 ~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~---~~v~ 684 (790)
.+.+||..+.+.... ++.+.. -..+ ++++..|+++ .++.|.++|..+.+.+.++....+. ..++
T Consensus 86 ~v~v~D~~tl~~~~t-----i~~~~~-----Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN 153 (243)
T 3mbr_X 86 EGFVYDLATLTPRAR-----FRYPGE-----GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN 153 (243)
T ss_dssp EEEEEETTTTEEEEE-----EECSSC-----CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEEECCcCcEEEE-----EeCCCC-----ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence 999999999654432 332211 1233 4567777765 5778999999999988887653222 3456
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCC----C-cccccceEEEEEecCCCCEEEEE
Q 003871 685 YATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG----T-ISLELYPLVIAAHPLEPNRIALG 751 (790)
Q Consensus 685 ~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~g----h-~~~~v~~~~v~~sp~d~~~las~ 751 (790)
.+.|. +|+..+..-.+..|.+.|..+|+.+..+......+.. + .... ..++||+|..+++++||
T Consensus 154 eLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~v--lNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 154 ELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDV--LNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSC--EEEEEEETTTTEEEEEE
T ss_pred eeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCc--eEEEEEcCCCCEEEEEC
Confidence 67765 6665544446789999999999999998765443221 1 1122 34999999434444554
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.62 E-value=1.6e-05 Score=82.95 Aligned_cols=236 Identities=13% Similarity=0.046 Sum_probs=144.9
Q ss_pred CeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcC-C-------------------CCCeEEEEEcC-CCeEEEEe
Q 003871 508 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN-P-------------------PPIATYFILLP-QDLFAFGF 563 (790)
Q Consensus 508 ~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~-~-------------------~~~v~~l~~s~-~g~l~sgs 563 (790)
...++++. +++++++. ++.|..|+..+++.. .+.. . ...+..+++.+ +|.|+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 34567777 66566666 889999998765433 2221 0 12468899998 56555665
Q ss_pred CCCcEEEEeCCCCceEEEEc----C-CCCCEEEEEEeC-CCCEEEEEeC-----------------CCcEEEEECCCCce
Q 003871 564 DDSSILVHCPCTKKTKAKLK----G-HQNRITCLAYSL-SLNVLVSSGA-----------------DAQLCVWDAVGWKK 620 (790)
Q Consensus 564 ~dg~I~iwd~~~~~~~~~l~----~-h~~~v~~l~~sp-dg~~l~s~s~-----------------dg~I~vwd~~~~~~ 620 (790)
..+.|..+|..++.. ..+. + .....+.+++.| +|+..++-.. ++.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 556688899776542 2221 1 123578899999 9987776432 36788899876542
Q ss_pred eeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEECCCCc--eeeeecCCCCCCCeEEEEEecCCCEEE
Q 003871 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIY 696 (790)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~ 696 (790)
.. ... .- .....++++|+++.|+++ ..+.|..|++.... ....+.. ... ...++++++|++.+
T Consensus 178 ~~--~~~----~~----~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 178 TL--LLK----EL----HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EE--EEE----EE----SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEE
T ss_pred EE--ecc----CC----ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEE
Confidence 11 111 11 245679999999977765 56789999987421 1122211 123 78899999999776
Q ss_pred EEEc----------CCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 697 VSCK----------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 697 sgs~----------dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
+... .+.|..+|.. |+.+..+... .|..-..+. ++++ . ++.+.++...++.|..+++....
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~----~g~~~~~~~--~~~~-~-~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP----PPFAGEHFE--QIQE-H-DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC----TTTTTSCCC--EEEE-E-TTEEEEECSSCSEEEEEEC----
T ss_pred EecCcccccccCCCccEEEEECCC-CCEEEEEECC----CCCccccce--EEEE-e-CCEEEEeecCCCceEEEeccccc
Confidence 6554 4678888874 6766665422 121112233 5665 3 56666666678899999986544
Q ss_pred c
Q 003871 767 V 767 (790)
Q Consensus 767 ~ 767 (790)
+
T Consensus 316 ~ 316 (322)
T 2fp8_A 316 N 316 (322)
T ss_dssp -
T ss_pred C
Confidence 3
No 260
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.57 E-value=2e-05 Score=77.08 Aligned_cols=188 Identities=13% Similarity=0.096 Sum_probs=125.3
Q ss_pred CCCCeEEEEec-CcEEEEec-C--CeEEEEECCCCcEEEEEcCCCCCe-EEEEEcCCCeEEEEeCCCcEEEEeCCCCceE
Q 003871 505 PKDSISCFALR-GSHLFSAS-G--GKISIFSLETFQTLATFANPPPIA-TYFILLPQDLFAFGFDDSSILVHCPCTKKTK 579 (790)
Q Consensus 505 ~~~~V~~l~~s-~~~l~s~s-d--g~I~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~ 579 (790)
...-...+.|+ +.+..+++ . +.|+.+|+.+++.+.++.-..... -.+++..+-.....-.++.+.+||..+.+.+
T Consensus 19 ~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 19 TTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp TTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred CccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence 34556789999 55555555 3 489999999999999886443321 2344432214444557889999999999999
Q ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCC
Q 003871 580 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG 658 (790)
Q Consensus 580 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg 658 (790)
.++..... ...+.+|++.|+.+..++.|.++|..+.+......+..-.... ..++.+.+. +|+..+.. .+.
T Consensus 99 ~ti~~~~~---Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~----~~lNeLe~~-~G~lyanvw~s~ 170 (243)
T 3mbr_X 99 ARFRYPGE---GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL----DNLNELEWV-NGELLANVWLTS 170 (243)
T ss_dssp EEEECSSC---CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC----CCEEEEEEE-TTEEEEEETTTT
T ss_pred EEEeCCCC---ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc----ccceeeEEe-CCEEEEEECCCC
Confidence 88874322 2334467777777777889999999996654433332101111 245666666 66655445 678
Q ss_pred cEEEEECCCCceeeeecCCC-----------CCCCeEEEEEecCCCEEEEEEc
Q 003871 659 QIDVYEAPTLNHTSQLVPDK-----------MDLPITYATYSCDGKCIYVSCK 700 (790)
Q Consensus 659 ~I~iwd~~~~~~~~~~~~~~-----------h~~~v~~l~~s~dg~~l~sgs~ 700 (790)
.|.+.|..+++.+..+.... .....+.++++|+++.|+..+.
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999999988775321 1246789999998776666553
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.49 E-value=2e-05 Score=89.16 Aligned_cols=247 Identities=13% Similarity=0.062 Sum_probs=148.2
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEecC----c-EEEEec----
Q 003871 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRG----S-HLFSAS---- 523 (790)
Q Consensus 453 g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s~----~-~l~s~s---- 523 (790)
+..++.++.|+.+.-+|..+++. +|....+..... ......++. ..+ + .+++++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~------------~W~~~~~~~~~~--~~~~~sP~v---~~~~~~G~~~v~vg~~~~e 179 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKV------------VWKKKFADHGAG--YTMTGAPTI---VKDGKTGKVLLIHGSSGDE 179 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCE------------EEEEECSCGGGT--CBCCSCCEE---EECTTTCCEEEEECCBCGG
T ss_pred CCEEEEEeCCCEEEEEECCCCCE------------EeeecCCCCCcC--cccccCCEE---eCCCcCCcEEEEEeccccc
Confidence 45688888899999999888765 444221110000 000111111 112 1 455543
Q ss_pred ---CCeEEEEECCCCcEEEEEcCCCCCe-----------------------------------------EEEEEcCCC-e
Q 003871 524 ---GGKISIFSLETFQTLATFANPPPIA-----------------------------------------TYFILLPQD-L 558 (790)
Q Consensus 524 ---dg~I~vwd~~~~~~~~~~~~~~~~v-----------------------------------------~~l~~s~~g-~ 558 (790)
++.|..+|..+|+.+.+.......+ ..+++.|+. .
T Consensus 180 ~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~ 259 (582)
T 1flg_A 180 FGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNT 259 (582)
T ss_dssp GCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTE
T ss_pred cCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCE
Confidence 5899999999999887764321000 134566666 6
Q ss_pred EEEEeC--------------------C----CcEEEEeCCCCceEEEEcC--CC--------CCEEEEEEe-CCCC---E
Q 003871 559 FAFGFD--------------------D----SSILVHCPCTKKTKAKLKG--HQ--------NRITCLAYS-LSLN---V 600 (790)
Q Consensus 559 l~sgs~--------------------d----g~I~iwd~~~~~~~~~l~~--h~--------~~v~~l~~s-pdg~---~ 600 (790)
++.++. | +.|.-+|..+|+.+..++. |. .++. +... .+|+ .
T Consensus 260 vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~ 338 (582)
T 1flg_A 260 IIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKA 338 (582)
T ss_dssp EEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEE
T ss_pred EEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEE
Confidence 665552 2 5899999999998877643 32 1221 1222 4674 6
Q ss_pred EEEEeCCCcEEEEECCCCceeeceeeee-e--------ccC-------CCCC--------C------------CCeEEEE
Q 003871 601 LVSSGADAQLCVWDAVGWKKLCSKFLHS-F--------QTG-------LVPE--------T------------TIVNHIQ 644 (790)
Q Consensus 601 l~s~s~dg~I~vwd~~~~~~~~~~~l~~-~--------~~~-------~~~~--------~------------~~v~~i~ 644 (790)
++.++.+|.++++|..+|+.+....+.. . ..+ ..+. . ..-..++
T Consensus 339 v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a 418 (582)
T 1flg_A 339 TAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMA 418 (582)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCE
T ss_pred EEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCce
Confidence 8889999999999999988664433221 0 000 0000 0 0012456
Q ss_pred EeCCCCEEEEE-e---------------------------------CCcEEEEECCCCceeeeecCCCCCCCeEEEEEec
Q 003871 645 FHPDQIHLLSI-H---------------------------------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 690 (790)
Q Consensus 645 ~sp~~~~l~~~-~---------------------------------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~ 690 (790)
++|+...+++. . +|.|+-||+.+++.+-+... ..++..-....
T Consensus 419 ~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~---~~~~~~g~~~t 495 (582)
T 1flg_A 419 YSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKE---HLPLWAGVLAT 495 (582)
T ss_dssp ECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEE---SSCCCSCCEEE
T ss_pred ECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecC---CCCCcccceEe
Confidence 77765555542 1 46799999999998765543 12222222333
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEecc
Q 003871 691 DGKCIYVSCKSGHVKVFDTSTLELRCQINL 720 (790)
Q Consensus 691 dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~ 720 (790)
.+.+++.|+.||.++.||.++|+.+..+..
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 577888899999999999999999988764
No 262
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.46 E-value=0.00098 Score=69.46 Aligned_cols=276 Identities=10% Similarity=0.083 Sum_probs=153.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEE
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 519 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l 519 (790)
...+.++.|.+++..++ ++.+|.|. ...+.+.. |...... .......+.++.+. +..+
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~t-------------W~~~~~~------~~~~~~~~~~i~~~~~~~~ 93 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQT-------------WEPRTLV------LDHSDYRFNSVSFQGNEGW 93 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEE-EESSTTSS-------------CEECCCC------CSCCCCEEEEEEEETTEEE
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCC-------------CeECCCC------CCCCCccEEEEEecCCeEE
Confidence 45789999988877666 55667542 22222221 3211100 00124467888888 5555
Q ss_pred EEecCCeEEEEECCCCcEEEEEc---CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEE-cCCCCCEEEEEE
Q 003871 520 FSASGGKISIFSLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNRITCLAY 594 (790)
Q Consensus 520 ~s~sdg~I~vwd~~~~~~~~~~~---~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l-~~h~~~v~~l~~ 594 (790)
+.+..+.|.. ..+.|+.-.... .....+..+.+.+++ .++++ .+|.|+.- .+.|+.-... .++...+.++++
T Consensus 94 ~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 94 IVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred EEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence 5555675443 223343322222 123456778877777 55554 46655332 2334433332 345667899999
Q ss_pred eCCCCEEEEEeCCCcEEEEEC--CCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceee
Q 003871 595 SLSLNVLVSSGADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS 672 (790)
Q Consensus 595 spdg~~l~s~s~dg~I~vwd~--~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~ 672 (790)
.|++.+++.+...+..+-+|- .+.+ .+. .... ..+..+++.+++..++++.+|.+++.+...++.-.
T Consensus 171 ~~~~~~~~~g~~G~~~~S~d~gG~tW~-----~~~---~~~~---~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~ 239 (327)
T 2xbg_A 171 SPSGEYVAVSSRGSFYSTWEPGQTAWE-----PHN---RTTS---RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWG 239 (327)
T ss_dssp CTTSCEEEEETTSSEEEEECTTCSSCE-----EEE---CCSS---SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEC
T ss_pred cCCCcEEEEECCCcEEEEeCCCCCcee-----ECC---CCCC---CccceeEECCCCCEEEEeCCceEEEecCCCCCeeE
Confidence 999888876654443444443 2221 221 1122 47889999999988887888888777533233322
Q ss_pred eecCC--CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEE
Q 003871 673 QLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 750 (790)
Q Consensus 673 ~~~~~--~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las 750 (790)
.+... .+...+.++++.+++..++++ .+|.| .+..+.|+--..+.... +. ...++ ++.|.+ ++ .++.
T Consensus 240 ~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~----~~-~~~~~--~v~~~~-~~-~~~~ 308 (327)
T 2xbg_A 240 ELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVK----KV-PSNFY--KILFFS-PD-QGFI 308 (327)
T ss_dssp CCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGT----TS-SSCCC--EEEEEE-TT-EEEE
T ss_pred eccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccC----CC-CCCeE--EEEEEC-CC-ceEE
Confidence 22211 123468899999888766665 46766 45556564433332110 11 12455 788876 44 4666
Q ss_pred EeCCCcEEEEec
Q 003871 751 GLTNGRVHVIEP 762 (790)
Q Consensus 751 ~s~Dg~i~iW~~ 762 (790)
++.+|.|.-++-
T Consensus 309 ~G~~G~i~~~~~ 320 (327)
T 2xbg_A 309 LGQKGILLRYVT 320 (327)
T ss_dssp ECSTTEEEEECC
T ss_pred EcCCceEEEEcC
Confidence 778997766653
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.39 E-value=0.00058 Score=71.91 Aligned_cols=234 Identities=13% Similarity=0.034 Sum_probs=146.3
Q ss_pred EEEEec-CcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCC
Q 003871 510 SCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQ 586 (790)
Q Consensus 510 ~~l~~s-~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~ 586 (790)
+|.+.. ..+|+.+....|+..++........... ...+..++|++.+ .+++-...+.|+.+++..+.....+....
T Consensus 37 ~C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 115 (349)
T 3v64_C 37 SCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 115 (349)
T ss_dssp CEEESSSCCEEEEECBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred cccccccCceeEeecccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCC
Confidence 344444 4566666666788888876554444443 3457899999766 44455567889999988665443333333
Q ss_pred CCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eC-CcEEE
Q 003871 587 NRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDV 662 (790)
Q Consensus 587 ~~v~~l~~spdg~~l-~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~d-g~I~i 662 (790)
.....+++.+.+..| ++-...+.|.+.++.+... .. +..... .....++++|.+..|+.+ .. +.|..
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~---l~~~~l---~~P~~iavdp~~g~ly~td~~~~~~I~r 186 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KV---LLWQSL---EKPRAIALHPMEGTIYWTDWGNTPRIEA 186 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EE---EECTTC---SCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce---EE---EEeCCC---CCcceEEEecCcCeEEEeccCCCCEEEE
Confidence 456789999855544 5555578899999876321 11 111111 357899999977777664 34 77999
Q ss_pred EECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEe
Q 003871 663 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH 741 (790)
Q Consensus 663 wd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~s 741 (790)
+++. +.....+.. ........++++|++..|+.+. ..+.|..+|+........+.. + .-.+.++++.
T Consensus 187 ~~~d-G~~~~~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~------~----~~~P~giav~ 254 (349)
T 3v64_C 187 SSMD-GSGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ------G----LPHPFAITVF 254 (349)
T ss_dssp EETT-SCSCEESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS------S----CSSEEEEEEE
T ss_pred EeCC-CCCcEEEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC------C----CCCceEEEEE
Confidence 9986 443333322 1245678999998777666554 467899999876543333221 1 1124467773
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCcc
Q 003871 742 PLEPNRIALGLTNGRVHVIEPLESEV 767 (790)
Q Consensus 742 p~d~~~las~s~Dg~i~iW~~~~~~~ 767 (790)
++...++-...+.|...+..+|+.
T Consensus 255 --~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 255 --EDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp --TTEEEEEETTTTEEEEEETTTCCS
T ss_pred --CCEEEEecCCCCeEEEEEccCCCc
Confidence 455666666778888888666643
No 264
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.37 E-value=0.0006 Score=70.75 Aligned_cols=227 Identities=11% Similarity=-0.014 Sum_probs=141.6
Q ss_pred EEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC---Cce-EEEEcCCCCCEEE
Q 003871 518 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT---KKT-KAKLKGHQNRITC 591 (790)
Q Consensus 518 ~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~---~~~-~~~l~~h~~~v~~ 591 (790)
+|+.+....|+..|+.+.+....+. .......++|++.+ .+++-..++.|+.+++.+ +.. ...+...-.....
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 4566666778999998776555544 34557899999876 444555668999999875 122 2223322245678
Q ss_pred EEEeCCCCEE-EEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eC-CcEEEEECCC
Q 003871 592 LAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPT 667 (790)
Q Consensus 592 l~~spdg~~l-~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~d-g~I~iwd~~~ 667 (790)
+++.+.+..| ++-...+.|.++|+..... .. +..... .....++++|.+..|+.+ .. +.|..+++.
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~---~~---~~~~~~---~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d- 151 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR---KT---LFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN- 151 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSE---EE---EEECTT---CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCce---EE---EEECCC---CCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-
Confidence 9999755544 5556678999999876321 11 111111 357899999977766654 32 689999885
Q ss_pred CceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCC
Q 003871 668 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 746 (790)
Q Consensus 668 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 746 (790)
|.....+... .-.....+++++++..|+.+. ..+.|..+|+............ ...-.+.++++. .+.
T Consensus 152 G~~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~--------~~~~~P~giav~--~~~ 220 (316)
T 1ijq_A 152 GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVF--EDK 220 (316)
T ss_dssp SCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT--------TTTSSEEEEEEE--TTE
T ss_pred CCCeEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecC--------CccCCcEEEEEE--CCE
Confidence 4444444321 245688999999877776555 4579999999854332222210 001124467774 356
Q ss_pred EEEEEeCCCcEEEEecCCCc
Q 003871 747 RIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 747 ~las~s~Dg~i~iW~~~~~~ 766 (790)
++++-...+.|..++..+|+
T Consensus 221 ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEECCCCeEEEEeCCCCc
Confidence 66666677889999887665
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.35 E-value=0.00048 Score=73.69 Aligned_cols=233 Identities=13% Similarity=0.046 Sum_probs=146.3
Q ss_pred EEEec-CcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCC
Q 003871 511 CFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 587 (790)
Q Consensus 511 ~l~~s-~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~ 587 (790)
|.+.. ..+|+.+....|+.+++.......... ....+..++|++.+ ++++-...+.|+.+++..+.....+.....
T Consensus 81 C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~ 159 (386)
T 3v65_B 81 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE 159 (386)
T ss_dssp EEECSSCCEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS
T ss_pred ECCccccceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC
Confidence 33334 456666666778888887665544444 34457899999766 445555677899999886654443433334
Q ss_pred CEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eC-CcEEEE
Q 003871 588 RITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVY 663 (790)
Q Consensus 588 ~v~~l~~spdg~~l-~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~d-g~I~iw 663 (790)
....+++.+.+..| ++-...+.|.+.++.+... ..+ +..+. .....++++|.+..|+.+ .. +.|..+
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~---~~l--~~~~l----~~P~giavdp~~g~ly~td~~~~~~I~r~ 230 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KVL--LWQSL----EKPRAIALHPMEGTIYWTDWGNTPRIEAS 230 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC---EEE--ECSSC----SCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce---EEe--ecCCC----CCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence 56788999855554 4555567898888875321 111 11111 367899999987777764 34 679999
Q ss_pred ECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEec
Q 003871 664 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 742 (790)
Q Consensus 664 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 742 (790)
++.. .....+... .......++|+|++..|+.+. ..+.|..+|+........+.. + .-.+.++++.
T Consensus 231 ~~dG-~~~~~~~~~-~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~------~----~~~P~giav~- 297 (386)
T 3v65_B 231 SMDG-SGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ------G----LPHPFAITVF- 297 (386)
T ss_dssp ETTS-CSCEEEECS-SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS------S----CSSEEEEEEE-
T ss_pred eCCC-CCcEEEEEC-CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC------C----CCCceEEEEE-
Confidence 9864 333333221 245678999998777666554 467899999876543333221 1 1124477773
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCcc
Q 003871 743 LEPNRIALGLTNGRVHVIEPLESEV 767 (790)
Q Consensus 743 ~d~~~las~s~Dg~i~iW~~~~~~~ 767 (790)
.+.++++....+.|..++..+|+.
T Consensus 298 -~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 298 -EDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp -TTEEEEEETTTTEEEEEETTTCCS
T ss_pred -CCEEEEeeCCCCeEEEEECCCCcc
Confidence 456666766778888888666643
No 266
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.34 E-value=0.00059 Score=67.63 Aligned_cols=216 Identities=11% Similarity=0.025 Sum_probs=133.6
Q ss_pred EEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 003871 540 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616 (790)
Q Consensus 540 ~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~-h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 616 (790)
.+.+-...+..++++|++ ++++...++.|...|.. ++.+..+.- -......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 445556679999999987 55667778899999988 888777642 22468889999998777776677889999887
Q ss_pred CCceee-ceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCC--cEEEEEC-CCCceeeee-----cCCCCCCCeEEE
Q 003871 617 GWKKLC-SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEA-PTLNHTSQL-----VPDKMDLPITYA 686 (790)
Q Consensus 617 ~~~~~~-~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg--~I~iwd~-~~~~~~~~~-----~~~~h~~~v~~l 686 (790)
...... ..... +.....+.......++|+|.+..|.++ ... .|+.|+- .....+..+ ....+...+.++
T Consensus 100 ~~~~i~~~~~~~-~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 100 PNSEVKILKKIK-IPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp TTCCEEEEEEEE-CCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCeeeeeeeec-cccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 643211 11111 111111122568899999998777764 332 4555551 011112211 111124567899
Q ss_pred EEecCC-CEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcc---cccceEEEEEecCCCCEEEEEeCCCcEEEEec
Q 003871 687 TYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS---LELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 687 ~~s~dg-~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~---~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
+++|.. ++++.......+.++|.. |+.+..+.... |.++ ..-.+=.++|.| +|++.++ ++.+.++++..
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~----g~~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTK----GSRGLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECST----TGGGCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCC----ccCCcccccCCCCeeEECC-CCCEEEE-cCCceEEEEEe
Confidence 999864 566666677889999976 55666654331 2111 111244899999 7875555 67777777655
Q ss_pred CC
Q 003871 763 LE 764 (790)
Q Consensus 763 ~~ 764 (790)
..
T Consensus 252 ~~ 253 (255)
T 3qqz_A 252 QS 253 (255)
T ss_dssp --
T ss_pred cC
Confidence 43
No 267
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.34 E-value=0.00017 Score=75.11 Aligned_cols=247 Identities=11% Similarity=-0.016 Sum_probs=145.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeee-e------cccCCCCCCeEEEEe
Q 003871 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT-N------DIAADPKDSISCFAL 514 (790)
Q Consensus 442 ~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~-~------~~~~~~~~~V~~l~~ 514 (790)
....+++|+++|+.++++..++.|..|+..+... ..|......... . .........+.++++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~ 87 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-----------VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY 87 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-----------EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-----------EEEecccccccccccccccchhccccCCCCceEEE
Confidence 3456788999998788888889999887664322 000000000000 0 000001134678888
Q ss_pred c--CcEEEEec-CCeEEEEECCCCcEEEEEcC-----CCCCeEEEEEcC-CC-eEEEEeC-----------------CCc
Q 003871 515 R--GSHLFSAS-GGKISIFSLETFQTLATFAN-----PPPIATYFILLP-QD-LFAFGFD-----------------DSS 567 (790)
Q Consensus 515 s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~-----~~~~v~~l~~s~-~g-~l~sgs~-----------------dg~ 567 (790)
. +..|+.+. .+.|..+|..++.. ..+.. .......+++.+ +| ..++-.. ++.
T Consensus 88 ~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 88 NLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp ETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred cCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 7 45555554 55688888775532 22211 123468899999 88 4444322 367
Q ss_pred EEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEe
Q 003871 568 ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 646 (790)
Q Consensus 568 I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~-s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~s 646 (790)
|..+|..+++....... ....+.++++|+|+.|..+ +..+.|.+|++.+........+. . .. + ...++++
T Consensus 167 v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~---~-~~---g-P~gi~~d 237 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV---K-IP---N-PGNIKRN 237 (322)
T ss_dssp EEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE---E-CS---S-EEEEEEC
T ss_pred EEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE---e-CC---C-CCCeEEC
Confidence 99999877754322221 2345679999999866655 55689999998853211111111 1 11 3 6779999
Q ss_pred CCCCEEEEE-e----------CCcEEEEECCCCceeeeecCCCC--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 647 PDQIHLLSI-H----------EGQIDVYEAPTLNHTSQLVPDKM--DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 647 p~~~~l~~~-~----------dg~I~iwd~~~~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
++|.+.++. . .+.|..+|.. ++.+..+..... ...+..+++ .++++.++...++.|.++++..
T Consensus 238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 999876664 3 3668899874 777776654211 234666766 4666666666678888888764
No 268
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.32 E-value=0.0017 Score=67.36 Aligned_cols=203 Identities=8% Similarity=-0.037 Sum_probs=126.6
Q ss_pred CCCeEEEEec--CcEEEEec--CCeEEEEECCC---CcE-EEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC
Q 003871 506 KDSISCFALR--GSHLFSAS--GGKISIFSLET---FQT-LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT 575 (790)
Q Consensus 506 ~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~~---~~~-~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~ 575 (790)
...+.+++|+ ++.|+.+. .+.|..+++.. +.. ...+.........+++.+.+ ..++-...+.|.+++...
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 4567789998 55555555 68999999875 122 22233222345788998755 444556678999999875
Q ss_pred CceEEEEcCCCCCEEEEEEeCCCCEEEEEeCC--CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEE
Q 003871 576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD--AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 653 (790)
Q Consensus 576 ~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d--g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~ 653 (790)
......+.........++++|.+..|..+... +.|...++..... ..+ ....- .....++++|++..|+
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~---~~~---~~~~~---~~P~gla~d~~~~~lY 179 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSL---VTENI---QWPNGITLDLLSGRLY 179 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEE---ECSSC---SCEEEEEEETTTTEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe---EEE---EECCC---CCceEEEEeccCCEEE
Confidence 43333333334567899999966665555443 6888888875221 111 11111 3678999999888777
Q ss_pred EE--eCCcEEEEECCCCceeeeecC-CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003871 654 SI--HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 654 ~~--~dg~I~iwd~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~ 719 (790)
.+ ..+.|..+|+.. ...+.+.. .........+++. .+..+++-...+.|..++..+|+.+..+.
T Consensus 180 ~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 180 WVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 75 567899999964 33333322 1123456788885 45555566667899999988887665553
No 269
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.30 E-value=0.00041 Score=71.61 Aligned_cols=229 Identities=10% Similarity=0.011 Sum_probs=136.7
Q ss_pred CCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeC-CC-cEEEEeCCCCceEE
Q 003871 507 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS-SILVHCPCTKKTKA 580 (790)
Q Consensus 507 ~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~-dg-~I~iwd~~~~~~~~ 580 (790)
.....++|+ ++++++-. ++.|..||... +....+. .......+++.++| .+++... ++ .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 567789998 66555554 78999999875 4433333 23467899999999 5554433 33 57778877776543
Q ss_pred EEcC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeec--ee-eee-eccCCCCCCCCeEEEEEeCCCCEEEEE
Q 003871 581 KLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KF-LHS-FQTGLVPETTIVNHIQFHPDQIHLLSI 655 (790)
Q Consensus 581 ~l~~-h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~--~~-l~~-~~~~~~~~~~~v~~i~~sp~~~~l~~~ 655 (790)
.... .......++..+++..+++-..++.|.++|..+++.... .. +.. .....- .....+ +|+++.|+++
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv~ 184 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYVS 184 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEEE
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEEE
Confidence 2221 223345666666555555554688999999876421000 00 000 000111 234455 8888888775
Q ss_pred --eCCcEEEEECCC-Cce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcc
Q 003871 656 --HEGQIDVYEAPT-LNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 730 (790)
Q Consensus 656 --~dg~I~iwd~~~-~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~ 730 (790)
..+.|..||+.. ++. ...+.. ......++++++|++.++....+.|.++|.. |+........ .
T Consensus 185 d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--------~ 252 (306)
T 2p4o_A 185 NTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--------Q 252 (306)
T ss_dssp ETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--------G
T ss_pred eCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--------c
Confidence 567899999864 322 122211 2346678999999987777778899999975 6553321111 0
Q ss_pred cccceEEEEEe---cCCCCEEEEEeCCC
Q 003871 731 LELYPLVIAAH---PLEPNRIALGLTNG 755 (790)
Q Consensus 731 ~~v~~~~v~~s---p~d~~~las~s~Dg 755 (790)
..-.+.+++|. | +++.|+.++..+
T Consensus 253 ~~~~p~~~a~~g~~~-d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEG-DCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTT-TTTEEEEEECTT
T ss_pred ccCCceEEEEecccC-CCCEEEEECCCC
Confidence 01225599998 7 777666655443
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.27 E-value=0.0016 Score=68.58 Aligned_cols=202 Identities=8% Similarity=-0.030 Sum_probs=129.3
Q ss_pred CCCeEEEEec--CcEEEEec--CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceE
Q 003871 506 KDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK 579 (790)
Q Consensus 506 ~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~ 579 (790)
...+..++|+ ++.|+.+. .+.|..+++..+.....+.........+++.+.+ +.++-...+.|.+.++......
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence 3457889998 55555554 6899999998665444343333445688998765 4455556778999998754333
Q ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEe-CC-CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--
Q 003871 580 AKLKGHQNRITCLAYSLSLNVLVSSG-AD-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-- 655 (790)
Q Consensus 580 ~~l~~h~~~v~~l~~spdg~~l~s~s-~d-g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-- 655 (790)
..+...-.....++++|.+..|.... .. +.|..+++..... .. +....- .....++++|++..|+.+
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~---~~~~~~---~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR---RI---IADTHL---FWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EE---SCCSSC---SCEEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc---EE---EEECCC---CCcceEEEeCCCCEEEEEEC
Confidence 33333445678999999665555444 34 7788888876321 11 111111 357899999988777775
Q ss_pred eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003871 656 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 656 ~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~ 719 (790)
..+.|..+|+... ....+... .......+++ .++...++-...+.|..++..+|+.+..+.
T Consensus 223 ~~~~I~~~~~dG~-~~~~~~~~-~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 223 KHHVIERANLDGS-HRKAVISQ-GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTTEEEEEETTSC-SCEEEECS-SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCEEEEEeCCCC-ceEEEEeC-CCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 5678999998643 33333221 2456778888 345555565567889999877776655553
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.26 E-value=0.00059 Score=70.40 Aligned_cols=223 Identities=11% Similarity=-0.035 Sum_probs=134.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEE
Q 003871 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 519 (790)
Q Consensus 442 ~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l 519 (790)
.....++|+++|+.+++-..++.|..|+.... ..... .....+..+++. |+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~----------------------~~~~~---~~~~~p~gia~~~dG~l~ 86 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN----------------------QQIHA---TVEGKVSGLAFTSNGDLV 86 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC----------------------EEEEE---ECSSEEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc----------------------eEEEE---eCCCCceeEEEcCCCcEE
Confidence 45778999999985555556888888875531 11111 123457888998 6655
Q ss_pred EEec-C--CeEEEEECCCCcEEEEEcC-CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEEEc---------C
Q 003871 520 FSAS-G--GKISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLK---------G 584 (790)
Q Consensus 520 ~s~s-d--g~I~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~-~~~l~---------~ 584 (790)
++.. . ..|..++..+++....... .......++..+++ .+++-..++.|+++|..+++. +.... +
T Consensus 87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~ 166 (306)
T 2p4o_A 87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 166 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence 4443 2 2477778777775433322 12233455555656 455555688999999876532 21111 1
Q ss_pred CCCCEEEEEEeCCCCEEEEE-eCCCcEEEEECCC-CceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEE
Q 003871 585 HQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 661 (790)
Q Consensus 585 h~~~v~~l~~spdg~~l~s~-s~dg~I~vwd~~~-~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~ 661 (790)
.-...+.+ +||++.|+.+ ...+.|..+|+.. ++......+. .. .....++++++|++.++. ..+.|.
T Consensus 167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~---~~-----~~P~gi~vd~dG~l~va~~~~~~V~ 236 (306)
T 2p4o_A 167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV---EQ-----TNIDDFAFDVEGNLYGATHIYNSVV 236 (306)
T ss_dssp CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE---ES-----CCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe---cc-----CCCCCeEECCCCCEEEEeCCCCeEE
Confidence 11245566 8888766554 4567899999875 3321111111 11 135668999999876663 578899
Q ss_pred EEECCCCceee--eecCCCCCCCeEEEEEe---cCCCEEEEEEcCC
Q 003871 662 VYEAPTLNHTS--QLVPDKMDLPITYATYS---CDGKCIYVSCKSG 702 (790)
Q Consensus 662 iwd~~~~~~~~--~~~~~~h~~~v~~l~~s---~dg~~l~sgs~dg 702 (790)
++|.. ++... .+.. .....++++|. |+++.|+.++..+
T Consensus 237 ~~~~~-G~~~~~~~~~~--~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 237 RIAPD-RSTTIIAQAEQ--GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECTT-CCEEEEECGGG--TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EECCC-CCEEEEeeccc--ccCCceEEEEecccCCCCEEEEECCCC
Confidence 99985 65532 2322 13568999999 8988777665543
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.24 E-value=0.0011 Score=70.93 Aligned_cols=202 Identities=9% Similarity=-0.033 Sum_probs=130.4
Q ss_pred CCCeEEEEec--CcEEEEec--CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceE
Q 003871 506 KDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK 579 (790)
Q Consensus 506 ~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~ 579 (790)
...+..++|+ ++.|+.+. .+.|..+++..+.....+.........+++.+.+ ++++-...+.|.+.++......
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 3457889998 55555554 6899999998665444443333345678888765 4455556778999988754433
Q ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeC-C-CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--
Q 003871 580 AKLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-- 655 (790)
Q Consensus 580 ~~l~~h~~~v~~l~~spdg~~l~s~s~-d-g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-- 655 (790)
..+.........++++|.+..|..+.. . +.|..+++..... ..+ ...+- .....++++|++..|+.+
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~--~~~~~----~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR---RII--ADTHL----FWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEE--ECSSC----SCEEEEEEEGGGTEEEEEET
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc---EEE--EECCC----CCeeeEEEeCCCCEEEEEEC
Confidence 334434456899999997666555543 3 6788888876321 111 11111 357899999988777775
Q ss_pred eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003871 656 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 656 ~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~ 719 (790)
..+.|..+|+.... ...+... .......+++ ..+..+++....+.|..++..+|+.+..+.
T Consensus 266 ~~~~I~~~d~dG~~-~~~~~~~-~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 266 KHHVIERANLDGSH-RKAVISQ-GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTTEEEEECTTSCS-CEEEECS-SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCEEEEEeCCCCe-eEEEEEC-CCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 56789999986433 3333221 2456778888 445555566667889999977777666654
No 273
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.23 E-value=8.5e-05 Score=85.81 Aligned_cols=276 Identities=11% Similarity=0.002 Sum_probs=146.1
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEE
Q 003871 446 RLIYSH-SGDFLVALTQTA-----------THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 513 (790)
Q Consensus 446 ~l~~sp-dg~~l~s~~~dg-----------~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~ 513 (790)
++++.+ +|+.++.|+.+. .+.+||..++.. .... . ....+.....+++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w--------------~~~~--~----~~~~~~~~~~~~~ 249 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV--------------SDRT--V----TVTKHDMFCPGIS 249 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB--------------CCCE--E----EECSCCCSSCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE--------------EeCc--c----cCCCCCCcccccc
Confidence 456677 888888887643 466666655432 1100 0 0112333344455
Q ss_pred ec--CcEEEEec--CCeEEEEECCCCcEEEEEcCCCCC-eEEEEEcCCC-eEEEEe-CC-----CcEEEEeCCCCceEEE
Q 003871 514 LR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPI-ATYFILLPQD-LFAFGF-DD-----SSILVHCPCTKKTKAK 581 (790)
Q Consensus 514 ~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~-v~~l~~s~~g-~l~sgs-~d-----g~I~iwd~~~~~~~~~ 581 (790)
+. +.+++.|+ ++.+.+||..+++....-..+... -.+++..++| .++.|+ .+ ..+.+||..+++-..
T Consensus 250 ~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~- 328 (656)
T 1k3i_A 250 MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS- 328 (656)
T ss_dssp ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-
T ss_pred CCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-
Confidence 54 77888887 468999999876544322212221 2345666788 777777 44 479999998775332
Q ss_pred EcC-----CCCCEEEEEEeCCCCEEEEEeCCC---------cEEEEECCCCceeeceeeeeeccCC--CCCCCCeEEEEE
Q 003871 582 LKG-----HQNRITCLAYSLSLNVLVSSGADA---------QLCVWDAVGWKKLCSKFLHSFQTGL--VPETTIVNHIQF 645 (790)
Q Consensus 582 l~~-----h~~~v~~l~~spdg~~l~s~s~dg---------~I~vwd~~~~~~~~~~~l~~~~~~~--~~~~~~v~~i~~ 645 (790)
+.. ....-....+..++..++.|+.++ .+..||..+.... ........++ .+....-.++.|
T Consensus 329 ~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~--~~~~~~~~~~~~~~~~~~~~av~~ 406 (656)
T 1k3i_A 329 LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV--KSAGKRQSNRGVAPDAMCGNAVMY 406 (656)
T ss_dssp ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE--EEEEECEETTEECCCCBTCEEEEE
T ss_pred CCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCccee--ecCCccccccccCCCCCCCceEec
Confidence 210 000000011224455555555443 5678888774322 1111111100 000012345555
Q ss_pred eC-CCCEEEEE-eCC-----------cEEEEECCCCceeeeecCCCCCCC-eEEEEEecCCCEEEEEEcC----------
Q 003871 646 HP-DQIHLLSI-HEG-----------QIDVYEAPTLNHTSQLVPDKMDLP-ITYATYSCDGKCIYVSCKS---------- 701 (790)
Q Consensus 646 sp-~~~~l~~~-~dg-----------~I~iwd~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sgs~d---------- 701 (790)
.. +++.+++| .++ .|.+||..+..-.......-.... -.+++..|+|+.++.|+.+
T Consensus 407 ~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~ 486 (656)
T 1k3i_A 407 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP 486 (656)
T ss_dssp ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred cCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCc
Confidence 54 56666664 322 578888877654433201111222 3345667899999999865
Q ss_pred -CeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeC
Q 003871 702 -GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 753 (790)
Q Consensus 702 -g~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~ 753 (790)
..+.+||..+.+-.. +........+| .+....| ++++++.||.
T Consensus 487 ~~~v~~ydp~t~~W~~-~~~~~~~R~~h-------s~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 487 VFTPEIYVPEQDTFYK-QNPNSIVRVYH-------SISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp CCCCEEEEGGGTEEEE-CCCCSSCCCTT-------EEEEECT-TSCEEEEECC
T ss_pred ccceEEEcCCCCceee-cCCCCCccccc-------cHhhcCC-CcEEEecCCC
Confidence 568999998876433 21111001111 1344568 8999999985
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.22 E-value=0.003 Score=67.79 Aligned_cols=231 Identities=12% Similarity=-0.017 Sum_probs=145.9
Q ss_pred CcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCCCcEEEEeCCCC----ceEEEEcCCCCCE
Q 003871 516 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTK----KTKAKLKGHQNRI 589 (790)
Q Consensus 516 ~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~-sgs~dg~I~iwd~~~~----~~~~~l~~h~~~v 589 (790)
..+|+.+....|+..++.......... ....+..++|++.+ .|+ +-...+.|+.+++... .....+.......
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred cceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 346666667889999988665444443 44567899999866 444 4455678999998752 2233333344568
Q ss_pred EEEEEeCC-CCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE---eCCcEEEEEC
Q 003871 590 TCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEA 665 (790)
Q Consensus 590 ~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~---~dg~I~iwd~ 665 (790)
..+++.+. +++.++-...+.|.+.++.+.... .+ +.... .....++++|.+..|+.+ ..+.|...++
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~---~l--~~~~~----~~P~~iavdp~~g~ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK---TL--FRENG----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEE---EE--EECSS----CCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceE---EE--EeCCC----CCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence 89999984 444555556788999998863211 11 11121 357899999977777764 2468999998
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCC
Q 003871 666 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 744 (790)
Q Consensus 666 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d 744 (790)
. |.....+... .-.....+++++++..|+.+. ..+.|..+|+............ + ..-.+.+++.. .
T Consensus 233 d-G~~~~~~~~~-~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-----~---~l~~P~gl~v~--~ 300 (400)
T 3p5b_L 233 N-GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE-----K---RLAHPFSLAVF--E 300 (400)
T ss_dssp T-SCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS-----S---TTSSEEEEEEE--T
T ss_pred C-CCccEEEEEC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC-----C---CCCCCEEEEEe--C
Confidence 6 4433333221 246789999999887777664 4678999998765443333211 0 11124466664 3
Q ss_pred CCEEEEEeCCCcEEEEecCCCccc
Q 003871 745 PNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 745 ~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
+.++++-...+.|..++..+|+..
T Consensus 301 ~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 301 DKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp TEEEEEESSSCSEEEEESSSCCCC
T ss_pred CEEEEecCCCCeEEEEEcCCCCce
Confidence 456667667788999987777543
No 275
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.21 E-value=0.00012 Score=85.95 Aligned_cols=155 Identities=10% Similarity=0.042 Sum_probs=84.6
Q ss_pred EEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCce--EEEEc-CCCCCEEEEEEeCCCCEEEEEeC---CCcEEEEECC
Q 003871 549 TYFILLPQD-LFAFGFDD-----SSILVHCPCTKKT--KAKLK-GHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAV 616 (790)
Q Consensus 549 ~~l~~s~~g-~l~sgs~d-----g~I~iwd~~~~~~--~~~l~-~h~~~v~~l~~spdg~~l~s~s~---dg~I~vwd~~ 616 (790)
..++|+||| .|+....| ..|+.+++.++.. ...+. ........+.|+|||++|+..+. ...|+++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 457899999 66555544 2688889887642 22332 23345678899999999887653 3468889998
Q ss_pred CCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eC----CcEEEEECCCCceeee-ecCCCCCCCeEEEEEec
Q 003871 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE----GQIDVYEAPTLNHTSQ-LVPDKMDLPITYATYSC 690 (790)
Q Consensus 617 ~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d----g~I~iwd~~~~~~~~~-~~~~~h~~~v~~l~~s~ 690 (790)
++... . .+..+..... ....++.|+..+.+++.+ .+ ..|..+|+.++..... +........+..+.+.
T Consensus 304 ~~~~~-~-~~~~l~~~~~---~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~- 377 (751)
T 2xe4_A 304 KGNAH-N-TLEIVRPREK---GVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR- 377 (751)
T ss_dssp SCTTC-C-CEEESSCCCT---TCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-
T ss_pred CCCCC-c-eeEEeecCCC---CceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-
Confidence 74210 0 0021222222 345566655444444445 32 2578888765322222 2222112234445444
Q ss_pred CCCEEEEEEcCCe--EEEEEC
Q 003871 691 DGKCIYVSCKSGH--VKVFDT 709 (790)
Q Consensus 691 dg~~l~sgs~dg~--i~vwd~ 709 (790)
.+.++++...++. |+++++
T Consensus 378 ~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 378 SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp SSEEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEEEEeCCEEEEEEEec
Confidence 2334556666775 556665
No 276
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.16 E-value=0.0036 Score=67.17 Aligned_cols=204 Identities=8% Similarity=-0.048 Sum_probs=129.8
Q ss_pred CCCCeEEEEec--CcEEEEec--CCeEEEEECCCC----cEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCC
Q 003871 505 PKDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC 574 (790)
Q Consensus 505 ~~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~~~----~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~ 574 (790)
....+..++|+ ++.|+.+. .+.|..+++... .....+.........+++.+.+ +.++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34667889998 56665554 688999998752 2233333344567889998855 55555667899999987
Q ss_pred CCceEEEEcCCCCCEEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEE
Q 003871 575 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 652 (790)
Q Consensus 575 ~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~--dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l 652 (790)
.......+.........++++|.+.+|+.... .+.|...++..... ..+ +..+- .....|+++|++..|
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~---~~~--~~~~l----~~P~glavd~~~~~l 260 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSL--VTENI----QWPNGITLDLLSGRL 260 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC---EEE--ECSSC----SCEEEEEEETTTTEE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc---EEE--EECCC----CceEEEEEEeCCCEE
Confidence 55444444434456889999997666665542 37899999876321 111 11111 367899999988888
Q ss_pred EEE--eCCcEEEEECCCCceeeeec-CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003871 653 LSI--HEGQIDVYEAPTLNHTSQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 653 ~~~--~dg~I~iwd~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~ 719 (790)
+.+ ..+.|..+|+.... ...+. ..........+++. .+..+++-...+.|..+|..+|+.+..+.
T Consensus 261 Y~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 775 56789999986443 33332 21123456677773 34455566667889999988887666654
No 277
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.16 E-value=0.0083 Score=62.32 Aligned_cols=192 Identities=9% Similarity=-0.005 Sum_probs=109.0
Q ss_pred CCeEEEEec--CcEEEEecCCeEEEEECCCCcEEE-EEcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEE
Q 003871 507 DSISCFALR--GSHLFSASGGKISIFSLETFQTLA-TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 582 (790)
Q Consensus 507 ~~V~~l~~s--~~~l~s~sdg~I~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l 582 (790)
..+..+.+. +..++++.+|.|.. ..+.|+.-. ........+..+++.+++ .++++. +|.++.-+-..|..-..+
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~ 199 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPH 199 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeEC
Confidence 446677766 55555555664422 122233222 223445678899999988 666554 555544321113222222
Q ss_pred -cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeec-cCCCCCCCCeEEEEEeCCCCEEEEEeCCcE
Q 003871 583 -KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLSIHEGQI 660 (790)
Q Consensus 583 -~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~-~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I 660 (790)
......+..+++.++++.++ ++.+|.+++.+...++. ...+. .+ .... ..+.++++.|++..++++.++.+
T Consensus 200 ~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~t--W~~~~-~~~~~~~---~~~~~v~~~~~~~~~~~g~~g~i 272 (327)
T 2xbg_A 200 NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSEN--WGELL-SPLRRNS---VGFLDLAYRTPNEVWLAGGAGAL 272 (327)
T ss_dssp ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEE--ECCCB-CTTSSCC---SCEEEEEESSSSCEEEEESTTCE
T ss_pred CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCe--eEecc-CCcccCC---cceEEEEecCCCEEEEEeCCCeE
Confidence 23456789999999887654 45678887775332221 01111 11 0111 35889999998888888888877
Q ss_pred EEEECCCCceeeeecCC-CCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 003871 661 DVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 709 (790)
Q Consensus 661 ~iwd~~~~~~~~~~~~~-~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~ 709 (790)
.+....|+.-..+... .....+.++.|.++++ +++++.+|.|.-++-
T Consensus 273 -~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 273 -LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp -EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred -EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 3444445443333211 1235678899986655 556677888776653
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.14 E-value=0.0017 Score=64.25 Aligned_cols=200 Identities=16% Similarity=0.103 Sum_probs=130.2
Q ss_pred CCCCCeEEEEec--CcEEEEec--CCeEEEEECCCCcEEEEEcC-CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc
Q 003871 504 DPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 577 (790)
Q Consensus 504 ~~~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~ 577 (790)
+-...+..++|+ ++.|++.. ++.|...|.. ++.++++.- .....-.+++.+++ ++++.-.++.+.++++....
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 455679999999 56666544 6889999998 888887742 23467888999888 66665567789999876543
Q ss_pred e---EEEEc------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeee-----c-cCCCCCCCCeEE
Q 003871 578 T---KAKLK------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-----Q-TGLVPETTIVNH 642 (790)
Q Consensus 578 ~---~~~l~------~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~-----~-~~~~~~~~~v~~ 642 (790)
. +.... ........++|+|+++.|.++.......+|.+.. . .....+..+ . ..+. ..+.+
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~-~~~~~l~i~~~~~~~~~~~~---~d~S~ 177 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-L-LSSNELHISKDKALQRQFTL---DDVSG 177 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-T-TCSSCCEEEECHHHHHTCCS---SCCCE
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-c-ccCCceeeecchhhcccccc---CCcee
Confidence 2 22221 1234568999999988777777655555665542 1 000111100 0 0111 35789
Q ss_pred EEEeCCCCEEEE-E-eCCcEEEEECCCCceeeeecCCC--C-----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 643 IQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK--M-----DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 643 i~~sp~~~~l~~-~-~dg~I~iwd~~~~~~~~~~~~~~--h-----~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
++++|....+.+ + .+..+..+|.. ++.+..+.... + -...-.++|.++|+ |+..++.+.++++.-..
T Consensus 178 l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~~ 253 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQS 253 (255)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC--
T ss_pred EEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEecC
Confidence 999997766665 6 56779999975 66665554321 1 13568999999998 55558888888876543
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.03 E-value=0.002 Score=66.75 Aligned_cols=227 Identities=8% Similarity=-0.034 Sum_probs=139.6
Q ss_pred EEEEecCCeEEEEECCCCc--EEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceE-EEEcCCCCCEEEE
Q 003871 518 HLFSASGGKISIFSLETFQ--TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCL 592 (790)
Q Consensus 518 ~l~s~sdg~I~vwd~~~~~--~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~-~~l~~h~~~v~~l 592 (790)
+|+.+....|+..++.... ....+. .......++|++.+ .+.+-...+.|+.+++..+... ..+...-.....+
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 4555556788889987653 111222 12245688999865 4455556778999998765321 1222222356789
Q ss_pred EEeCCCC-EEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEe---CCcEEEEECCCC
Q 003871 593 AYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---EGQIDVYEAPTL 668 (790)
Q Consensus 593 ~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~---dg~I~iwd~~~~ 668 (790)
++.+.+. +.++-...+.|.++++.+... .. +..... .....++++|.+..|+.+. .+.|...++. |
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~---l~~~~~---~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G 154 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLR---KV---LFWQEL---DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-G 154 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC---EE---EECSSC---SSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-S
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcE---EE---EEeCCC---CCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-C
Confidence 9997544 445555678899999876321 11 111111 3678999999777776642 5779999885 4
Q ss_pred ceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCE
Q 003871 669 NHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 747 (790)
Q Consensus 669 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~ 747 (790)
.....+... .-.....++|++++..|+.+. ..+.|..+|+.......... +. .-.+.++++.. +.+
T Consensus 155 ~~~~~~~~~-~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~~---~~~P~glav~~--~~l 221 (318)
T 3sov_A 155 SSRFIIINS-EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-------GS---LPHPFALTLFE--DIL 221 (318)
T ss_dssp CSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------SC---CSCEEEEEEET--TEE
T ss_pred CCeEEEEEC-CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec-------CC---CCCceEEEEeC--CEE
Confidence 433333221 245678999999777666554 46889999987544332222 11 11244677654 456
Q ss_pred EEEEeCCCcEEEEecCCCccc
Q 003871 748 IALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 748 las~s~Dg~i~iW~~~~~~~~ 768 (790)
+.+-...+.|..++..+|+..
T Consensus 222 ywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp EEEETTTTEEEEEETTTCCSC
T ss_pred EEEecCCCeEEEEECCCCCce
Confidence 666667788999998777643
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.02 E-value=0.0014 Score=71.12 Aligned_cols=246 Identities=11% Similarity=-0.027 Sum_probs=145.3
Q ss_pred CCeEEEEec-C---cEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---C-cEEEEeCCCC
Q 003871 507 DSISCFALR-G---SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---S-SILVHCPCTK 576 (790)
Q Consensus 507 ~~V~~l~~s-~---~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~d---g-~I~iwd~~~~ 576 (790)
.....++++ . ..|+.+. .+.|+.+|..+++.... .........++++++| ++++.... . .+...+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 345678887 3 5666666 58899999987765443 3345567899999999 55554422 1 2333443222
Q ss_pred ce-EEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE
Q 003871 577 KT-KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (790)
Q Consensus 577 ~~-~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~ 654 (790)
.. ...+. .-.....++++| +|.+.++-..++.|+.+|..++.... .+. ..+.. ..-..++|+|++++|++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~--~~~--~~~~~---~~~~~ia~dpdG~~LYv 289 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE--EEV--MMDTK---GSNFHIVWHPTGDWAYI 289 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE--EEE--ECSCC---SSCEEEEECTTSSEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE--EEe--ccCCC---CCcccEEEeCCCCEEEE
Confidence 11 01121 123456788999 67766666667889999998654311 111 11111 23457999999997776
Q ss_pred E--eCCcEEEEECC--CCce--eeeecCC-C------------CCCCeEEEEE---------ecCCCEEEEEEcCCeEEE
Q 003871 655 I--HEGQIDVYEAP--TLNH--TSQLVPD-K------------MDLPITYATY---------SCDGKCIYVSCKSGHVKV 706 (790)
Q Consensus 655 ~--~dg~I~iwd~~--~~~~--~~~~~~~-~------------h~~~v~~l~~---------s~dg~~l~sgs~dg~i~v 706 (790)
+ ..+.|+.++.. ++.. ...+.+. . .-.....+++ .++|.+.++-..++.|+.
T Consensus 290 ad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~ 369 (433)
T 4hw6_A 290 IYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRV 369 (433)
T ss_dssp EETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEE
T ss_pred EeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEE
Confidence 4 56789998865 2321 1122111 0 1234677999 677777777777889999
Q ss_pred EECCCCeEEEEeccccc-cCCCCccc-------ccceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 707 FDTSTLELRCQINLTAY-AQPGTISL-------ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 707 wd~~~~~~~~~~~~~~~-~~~gh~~~-------~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
++. +|..... ..... ...|...+ --++.+++++|.++.++++-..++.|+.++++
T Consensus 370 ~~~-~G~v~t~-~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 370 LTP-EGRVTTY-AGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ECT-TSEEEEE-ECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ECC-CCCEEEE-EeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 985 5654333 22110 00011011 12366899995377777776677889888764
No 281
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.01 E-value=0.0002 Score=82.64 Aligned_cols=268 Identities=8% Similarity=0.003 Sum_probs=143.0
Q ss_pred C-CCCCCcccceeccCCC-----------ceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC-CCc
Q 003871 398 S-TSLPDADSAVCAKSLE-----------KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TAT 464 (790)
Q Consensus 398 ~-dg~~la~~~at~s~d~-----------~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~-dg~ 464 (790)
| +|+.+ +.|+.+. .+.+||... +....+......+.....++++.++|+.+++|+. +..
T Consensus 195 ~~~g~l~----v~GG~~~~~~~~~~~~~~~~~~yd~~t----~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 195 PTSGRVL----MWSSYRNDAFGGSPGGITLTSSWDPST----GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK 266 (656)
T ss_dssp TTTTEEE----EEEECCCTTTCSCCCSEEEEEEECTTT----CCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred ecCCEEE----EEecccccccccCCCCeEEEEEEeCCC----CcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCc
Confidence 5 78888 8776543 578888863 3322211100122333445778899998888885 557
Q ss_pred EEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEec--C-----CeEEEEECCCCc
Q 003871 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS--G-----GKISIFSLETFQ 536 (790)
Q Consensus 465 i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~s--d-----g~I~vwd~~~~~ 536 (790)
+.+||..+... .... .+. .....-.++.+. +++++.|+ + ..+.+||..+++
T Consensus 267 v~~yd~~t~~W--------------~~~~------~~~-~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 267 TSLYDSSSDSW--------------IPGP------DMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEEEGGGTEE--------------EECC------CCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred eEEecCcCCce--------------eECC------CCC-ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 88888776433 2110 000 111222334443 77777776 3 469999998776
Q ss_pred EEEEE----cCCCCCeEEEEEcCCC-eEEEEeCC---------CcEEEEeCCCCceEEEEcCCC---------CCEEEEE
Q 003871 537 TLATF----ANPPPIATYFILLPQD-LFAFGFDD---------SSILVHCPCTKKTKAKLKGHQ---------NRITCLA 593 (790)
Q Consensus 537 ~~~~~----~~~~~~v~~l~~s~~g-~l~sgs~d---------g~I~iwd~~~~~~~~~l~~h~---------~~v~~l~ 593 (790)
....- ......-....+..++ .++.|+.+ ..+..||..+.........+. ..-.++.
T Consensus 326 W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 326 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 43320 0000000001223445 44455444 356788888765433322111 1234455
Q ss_pred EeC-CCCEEEEEeCCC-----------cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eC---
Q 003871 594 YSL-SLNVLVSSGADA-----------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE--- 657 (790)
Q Consensus 594 ~sp-dg~~l~s~s~dg-----------~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d--- 657 (790)
+.. ++++++.|+.++ .|.+||..+..-.... ...++.. ..-.+.+..|+++.+++| .+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~-----R~~~~~~~l~~g~i~v~GG~~~~~ 479 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFA-----RTFHTSVVLPDGSTFITGGQRRGI 479 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSC-----CBSCEEEECTTSCEEEECCBSBCC
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCC-----cccCCeEECCCCCEEEECCcccCc
Confidence 544 777888887542 5778888764321100 0012222 123345677899988884 32
Q ss_pred --------CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 003871 658 --------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 700 (790)
Q Consensus 658 --------g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 700 (790)
..+.+||..+.+-...-.............+.|||+.++.|+.
T Consensus 480 ~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 480 PFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp TTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4589999977653321111111222334556799999999985
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.99 E-value=0.0032 Score=68.20 Aligned_cols=244 Identities=10% Similarity=-0.025 Sum_probs=140.6
Q ss_pred CeEEEEec---CcEEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC-C----cEEEEeCCCCc
Q 003871 508 SISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-S----SILVHCPCTKK 577 (790)
Q Consensus 508 ~V~~l~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs~d-g----~I~iwd~~~~~ 577 (790)
....++++ +..|+++. .+.|+.+|..++.... +.........++++++| .|+++... + .+.+++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 45567776 25566665 5889999998665443 33345567899999999 66666542 2 34444433 32
Q ss_pred eE--EEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE
Q 003871 578 TK--AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (790)
Q Consensus 578 ~~--~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~ 654 (790)
.. ..+.. ......++++| +|.++++-..++.|..+|..++... .+...... .....++|+|+|++|++
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~---~~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT---PLFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE---EEEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE---EEEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 21 22221 23356788999 7777776667889999999874421 11112111 35678999999997766
Q ss_pred E--eCCcEEEEECCC--Cce--eeeecCC-C------------CCCCeE-EEEEe--------cCCCEEEEEEcCCeEEE
Q 003871 655 I--HEGQIDVYEAPT--LNH--TSQLVPD-K------------MDLPIT-YATYS--------CDGKCIYVSCKSGHVKV 706 (790)
Q Consensus 655 ~--~dg~I~iwd~~~--~~~--~~~~~~~-~------------h~~~v~-~l~~s--------~dg~~l~sgs~dg~i~v 706 (790)
+ ..+.|..++... +.. +..+.+. . .-.... .++.. ++|.+.++-..++.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 567899987652 221 1222111 0 011223 45553 34666666666788999
Q ss_pred EECCCCeEEEEeccccccCCCCccc-------ccceEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 003871 707 FDTSTLELRCQINLTAYAQPGTISL-------ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 763 (790)
Q Consensus 707 wd~~~~~~~~~~~~~~~~~~gh~~~-------~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~ 763 (790)
++ .+|......-.......|...+ --.+..++++|+++.++++-..++.|+.++++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 98 4565443321100000010011 11366999999435566666667788888764
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.94 E-value=0.0075 Score=62.34 Aligned_cols=200 Identities=8% Similarity=-0.055 Sum_probs=126.3
Q ss_pred CeEEEEec--CcEEEEec--CCeEEEEECCCCcEE-EEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEE
Q 003871 508 SISCFALR--GSHLFSAS--GGKISIFSLETFQTL-ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA 580 (790)
Q Consensus 508 ~V~~l~~s--~~~l~s~s--dg~I~vwd~~~~~~~-~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~ 580 (790)
.+.+++|. ++.|+.+. .+.|..++...+... ..+.........+++.+.+ .+++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 45678887 45555444 689999998765321 1222222345678888755 44555567789999987543332
Q ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--e
Q 003871 581 KLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 656 (790)
Q Consensus 581 ~l~~h~~~v~~l~~spdg~~l~s~s~--dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~ 656 (790)
.+.........+++.|.+..|+.+.. .+.|...++..... ..+ +..+- .....++++|++..|+.+ .
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~--~~~~l----~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---FII--INSEI----YWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC---EEE--ECSSC----SCEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe---EEE--EECCC----CCccEEEEeccCCEEEEEECC
Confidence 33344456889999997666665552 57888888875221 111 11111 357899999988777775 5
Q ss_pred CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003871 657 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 657 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~ 719 (790)
.+.|..+|+.. ...+.+.. ........+++.. +..+++-...+.|..++..+|+....+.
T Consensus 187 ~~~I~~~d~dG-~~~~~~~~-~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 187 LNFIHKSNLDG-TNRQAVVK-GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTEEEEEETTS-CSCEEEEC-SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEcCCC-CceEEEec-CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 67899999864 33333432 1245667888753 3455555567899999998887665554
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.94 E-value=0.00031 Score=82.33 Aligned_cols=194 Identities=11% Similarity=0.039 Sum_probs=112.4
Q ss_pred CeEEEEEc-CCC-eEEEEe-CCC----cEEEEeCCCC-ceEE-EEcCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEE
Q 003871 547 IATYFILL-PQD-LFAFGF-DDS----SILVHCPCTK-KTKA-KLKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCV 612 (790)
Q Consensus 547 ~v~~l~~s-~~g-~l~sgs-~dg----~I~iwd~~~~-~~~~-~l~~h~~~v~~l~~spdg~~l~s~s~d-----g~I~v 612 (790)
.+...+|| ||| +||.+. .+| +|+++|+.++ +.+. .+. ....+++|+|||+.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57789999 999 666443 333 5999999988 6321 111 113467899999988877765 35888
Q ss_pred EECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-e---CCcEEEEECCCCc-ee--eeecCCCCCCCeEE
Q 003871 613 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H---EGQIDVYEAPTLN-HT--SQLVPDKMDLPITY 685 (790)
Q Consensus 613 wd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~---dg~I~iwd~~~~~-~~--~~~~~~~h~~~v~~ 685 (790)
+++.++.... ..+. ..... .....+.|+|||++|+.. . ...|+++|+.++. .. ..+.. .......+
T Consensus 252 ~~lgt~~~~~-~lv~--~~~~~---~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~~~~~~~s 324 (751)
T 2xe4_A 252 HVMGKLQSED-VCLY--EEHNP---LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-REKGVRYD 324 (751)
T ss_dssp EETTSCGGGC-EEEE--ECCCT---TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC-CCTTCCEE
T ss_pred EECCCCchhc-EEEE--ecCCC---ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec-CCCCceEE
Confidence 8887753211 1121 11111 346688999999999873 2 3459999998753 22 33432 22455566
Q ss_pred EEEecCCCEEEEEEcC----CeEEEEECCCC-eEEE-EeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEE
Q 003871 686 ATYSCDGKCIYVSCKS----GHVKVFDTSTL-ELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 759 (790)
Q Consensus 686 l~~s~dg~~l~sgs~d----g~i~vwd~~~~-~~~~-~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~i 759 (790)
+.|+.++.+++.+..+ ..|+.+++.++ +... .+. + ...+.+..+++. .+.++++...||..+|
T Consensus 325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~--------~-~~~~~l~~~~~~--~~~lv~~~~~~g~~~l 393 (751)
T 2xe4_A 325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD--------H-SEDVFMESIAVR--SNYLVVAGRRAGLTRI 393 (751)
T ss_dssp EEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC--------C-CSSEEEEEEEEC--SSEEEEEEEETTEEEE
T ss_pred EeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC--------C-CCCcEEEEEEEE--CCEEEEEEEeCCEEEE
Confidence 6655444444444433 36788887753 3222 221 1 112222245443 3456677777886555
Q ss_pred Ee
Q 003871 760 IE 761 (790)
Q Consensus 760 W~ 761 (790)
|-
T Consensus 394 ~~ 395 (751)
T 2xe4_A 394 WT 395 (751)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 285
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.92 E-value=0.028 Score=63.79 Aligned_cols=331 Identities=11% Similarity=-0.035 Sum_probs=174.5
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCCCCEEEEEeC-CC
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TA 463 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~-dg 463 (790)
..++|+ +.+..+ +++-...+.|..++++. ......+. . ..-.....+++.+.+..|+.+.. .+
T Consensus 43 ~~ld~~-------~~~~~l---y~sD~~~~~I~r~~~~g---~~~~~~v~-~--~~~~~P~GlAvD~~~~~ly~~d~~~~ 106 (619)
T 3s94_A 43 AAVDFV-------FSHGLI---YWSDVSEEAIKRTEFNK---TESVQNVV-V--SGLLSPDGLACDWLGEKLYWTDSETN 106 (619)
T ss_dssp EEEEEE-------TTTTEE---EEEETTTTEEEEEEC--------CEEEE-C--SSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEEEEE-------eCCCEE---EEEECCCCeEEEEEccC---CCceEEEE-e--CCCCCcCeEEEEecCCEEEEEeCCCC
Confidence 577887 655544 25555667888888863 11112211 1 11256889999997776666654 68
Q ss_pred cEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcEEEEec---CCeEEEEECCCCcEE
Q 003871 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTL 538 (790)
Q Consensus 464 ~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~l~s~s---dg~I~vwd~~~~~~~ 538 (790)
.|.+.+...... .... ...-.....+++. +..|+.+. .+.|...+++.....
T Consensus 107 ~I~v~~~dG~~~----------------------~~l~-~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 107 RIEVSNLDGSLR----------------------KVLF-WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp EEEEEETTSCSC----------------------EEEE-CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred EEEEEECCCCCE----------------------EEEE-eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 898888764321 0001 0123345677886 45554444 357777777633222
Q ss_pred EEEcCCCCCeEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 003871 539 ATFANPPPIATYFILLPQD-LFAFG-FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616 (790)
Q Consensus 539 ~~~~~~~~~v~~l~~s~~g-~l~sg-s~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 616 (790)
......-.....+++++++ .|+.+ +..+.|..+|+..........+......++++..+ ...++-...+.|...|..
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 2233334456899999876 55444 45668999998754332222211222346677655 344444456789999987
Q ss_pred CCceeec--------eeeeee-----ccCCCC---CCCCeEEEE-----------EeCCC---------------CEEEE
Q 003871 617 GWKKLCS--------KFLHSF-----QTGLVP---ETTIVNHIQ-----------FHPDQ---------------IHLLS 654 (790)
Q Consensus 617 ~~~~~~~--------~~l~~~-----~~~~~~---~~~~v~~i~-----------~sp~~---------------~~l~~ 654 (790)
+++.... ..+... +.+..+ ..+....++ ..|.| .+|+.
T Consensus 243 tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~ 322 (619)
T 3s94_A 243 TGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL 322 (619)
T ss_dssp SCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEE
T ss_pred CCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEE
Confidence 7643210 001100 000000 000011111 11221 24555
Q ss_pred EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEeccccccCCCCccccc
Q 003871 655 IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 733 (790)
Q Consensus 655 ~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v 733 (790)
+..+.|+..++..........+-..-..+..++|++.+..|+.+. ..+.|+.+++........+.. + -...
T Consensus 323 ~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~------~--~~~p 394 (619)
T 3s94_A 323 ARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA------Q--IAHP 394 (619)
T ss_dssp EESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS------S--CSCC
T ss_pred EcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC------C--CCCc
Confidence 666678888876543221111111245688999998666665544 578899999886543333321 1 1123
Q ss_pred ceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 734 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 734 ~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
. ++++.+..+++.++-+..+.|.+.++...
T Consensus 395 ~--GlAvD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 395 D--GIAVDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp C--EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred C--ceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence 3 77777644555566566678888877544
No 286
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.91 E-value=0.059 Score=61.08 Aligned_cols=178 Identities=10% Similarity=-0.031 Sum_probs=104.8
Q ss_pred CcEEEEeCCCCceEE-EEcC-CCCCEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEE
Q 003871 566 SSILVHCPCTKKTKA-KLKG-HQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH 642 (790)
Q Consensus 566 g~I~iwd~~~~~~~~-~l~~-h~~~v~~l~~spdg~~l~s~-s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 642 (790)
+.|+..++....... .+.. .-..+.+++|.+.+..|..+ ...+.|+.+++.+... .. +..... .....
T Consensus 326 ~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~---~~---v~~~~~---~~p~G 396 (619)
T 3s94_A 326 TDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS---QF---VVTAQI---AHPDG 396 (619)
T ss_dssp SCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EE---EECSSC---SCCCE
T ss_pred cceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc---EE---EEECCC---CCcCc
Confidence 456666665443211 1111 12457889999855555544 4577899999876321 11 111111 35678
Q ss_pred EEEeCCCCEEEEE--eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEe
Q 003871 643 IQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK--SGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 643 i~~sp~~~~l~~~--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~--dg~i~vwd~~~~~~~~~~ 718 (790)
+++.+.++.|+.+ ..+.|.+.++.. +....+... .-.....+++.|...+|+.+.. .+.|...+++..... .+
T Consensus 397 lAvD~~~~~lY~tD~~~~~I~v~~~~G-~~~~~l~~~-~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~-~l 473 (619)
T 3s94_A 397 IAVDWVARNLYWTDTGTDRIEVTRLNG-TMRKILISE-DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV-VL 473 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECT-TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EE
T ss_pred eEEecccCcEEEEeCCCCcEEEEeCCC-CeEEEEEEC-CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE-EE
Confidence 9999876666664 567899999864 433444322 2567899999997555555442 367877777654332 22
Q ss_pred ccccccCCCCcccccceEEEEEecCCCCEEEEE-eCCCcEEEEecCCC
Q 003871 719 NLTAYAQPGTISLELYPLVIAAHPLEPNRIALG-LTNGRVHVIEPLES 765 (790)
Q Consensus 719 ~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~-s~Dg~i~iW~~~~~ 765 (790)
.. ..-.++..+++++ ++..|..+ +..+.|...++...
T Consensus 474 ~~---------~~l~~P~GlalD~-~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 474 VN---------TSLGWPNGLALDY-DEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp EC---------SSCSCEEEEEEET-TTTEEEEEETTTTEEEEEESSSC
T ss_pred Ee---------CCCCCCeeeEEcc-cCCEEEEEECCCCEEEEEecCCC
Confidence 21 1122366899998 45555544 44567888887544
No 287
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.88 E-value=0.0041 Score=63.97 Aligned_cols=183 Identities=9% Similarity=0.073 Sum_probs=117.4
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCC----CC---EEE-EEeC--CCcEEEEECC--CCceeecee
Q 003871 558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS----LN---VLV-SSGA--DAQLCVWDAV--GWKKLCSKF 625 (790)
Q Consensus 558 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd----g~---~l~-s~s~--dg~I~vwd~~--~~~~~~~~~ 625 (790)
.++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ |+ +++ +... +++|.+|++. +++
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~------ 112 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT------ 112 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC------
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc------
Confidence 5555667789999999 7998888864 67888887773 22 223 3333 5789999774 322
Q ss_pred eeee-----c--cCCCCCCCCeEEEEE--eCC-CC-EEEEE-eCCcEEEEECC-------CCceeeeecCCCCCCCeEEE
Q 003871 626 LHSF-----Q--TGLVPETTIVNHIQF--HPD-QI-HLLSI-HEGQIDVYEAP-------TLNHTSQLVPDKMDLPITYA 686 (790)
Q Consensus 626 l~~~-----~--~~~~~~~~~v~~i~~--sp~-~~-~l~~~-~dg~I~iwd~~-------~~~~~~~~~~~~h~~~v~~l 686 (790)
+..+ + ... ..+..+++ +|. ++ +++++ .+|.+..|++. +.+.++++.. ...+-.+
T Consensus 113 l~~i~~~~~pv~t~~----~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~Egc 185 (355)
T 3amr_A 113 LQSMTDPDHPIATAI----NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGM 185 (355)
T ss_dssp EEECSCTTSCEECCC----SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEE
T ss_pred eeeccccccCcCCCC----CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceE
Confidence 2212 1 110 24555666 774 44 44554 78999988882 3456777765 4578899
Q ss_pred EEecCCCEEEEEEcCCeEEEEECC-----CCeEEEEeccccccCCCCcccccceEEEEEecCCCC-EEEEEe-CCCcEEE
Q 003871 687 TYSCDGKCIYVSCKSGHVKVFDTS-----TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHV 759 (790)
Q Consensus 687 ~~s~dg~~l~sgs~dg~i~vwd~~-----~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~las~s-~Dg~i~i 759 (790)
...+....|+.+-++.-|..++.+ +++.+..+.. |+-...+.-+++...+ +++ +|++++ .+.+..+
T Consensus 186 vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~------g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~V 258 (355)
T 3amr_A 186 AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG------RHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAI 258 (355)
T ss_dssp EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS------SSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEE
T ss_pred EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC------CccccCcceEEEEecC-CCCEEEEEEcCCCCEEEE
Confidence 999999999999999777777755 3445544321 3323345533333355 455 555555 6779999
Q ss_pred EecC
Q 003871 760 IEPL 763 (790)
Q Consensus 760 W~~~ 763 (790)
|+..
T Consensus 259 ydr~ 262 (355)
T 3amr_A 259 YDRQ 262 (355)
T ss_dssp EESS
T ss_pred EECC
Confidence 9997
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.86 E-value=0.018 Score=66.95 Aligned_cols=203 Identities=8% Similarity=-0.061 Sum_probs=124.9
Q ss_pred CCCCeEEEEec--CcEEEEec--CCeEEEEECCCC----cEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCC
Q 003871 505 PKDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC 574 (790)
Q Consensus 505 ~~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~~~----~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~ 574 (790)
....+..++|. ++.|+.+. .+.|+.+++... .....+.........+++.+.+ ++++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 34567788888 55555544 688999988752 2233333334456789998877 44455567799999987
Q ss_pred CCceEEEEcCCCCCEEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEE
Q 003871 575 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 652 (790)
Q Consensus 575 ~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~--dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l 652 (790)
.......+........+|+++|.+.+|+.... .+.|...++..... ..+....- .....|++++.+..|
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~------~~lv~~~l---~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSLVTENI---QWPNGITLDLLSGRL 572 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------EEEECSSC---SCEEEEEEETTTTEE
T ss_pred CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce------EEEEeCCC---CCceEEEEecCCCeE
Confidence 54433333334456899999997666665543 26799999876321 11111111 368899999888777
Q ss_pred EEE--eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEE-EEEcCCeEEEEECCCCeEEEEe
Q 003871 653 LSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 653 ~~~--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~dg~i~vwd~~~~~~~~~~ 718 (790)
+.+ ..+.|..+|+........+.....-.....|++. +..|+ +-...+.|...|..+|+.+..+
T Consensus 573 YwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 573 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 775 5667999998644333333221122345566664 33454 4445688999998887655554
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.83 E-value=0.0049 Score=63.37 Aligned_cols=192 Identities=11% Similarity=0.110 Sum_probs=125.2
Q ss_pred EEEEec-CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcC----CC-e--EEEEe--C--CCcEEEEeC--CCCceEEEEc
Q 003871 518 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP----QD-L--FAFGF--D--DSSILVHCP--CTKKTKAKLK 583 (790)
Q Consensus 518 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~----~g-~--l~sgs--~--dg~I~iwd~--~~~~~~~~l~ 583 (790)
+++... .+.+.+||+ +|+.+..+.. +.++.+..-| .| . ++.++ . +++|.+|++ .+++ +..+.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence 334334 789999999 7999888853 4566665544 23 1 33333 3 578999966 4443 44442
Q ss_pred C------CC-CCEEEEEE--eCC-CC-EEEEEeCCCcEEEEECC---CCceeeceeeeeeccCCCCCCCCeEEEEEeCCC
Q 003871 584 G------HQ-NRITCLAY--SLS-LN-VLVSSGADAQLCVWDAV---GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 649 (790)
Q Consensus 584 ~------h~-~~v~~l~~--spd-g~-~l~s~s~dg~I~vwd~~---~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~ 649 (790)
. .. ..+..+++ +|. ++ ++++...+|.+..|++. .+. ...+.++++..+ +.+-.++..+..
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~-~~~~lVR~f~lg-----sq~EgcvvDd~~ 191 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY-ISGKKVRAFKMN-----SQTEGMAADDEY 191 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-EEEEEEEEEECS-----SCEEEEEEETTT
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-ccceEEEEecCC-----CCcceEEEcCCC
Confidence 1 11 45666777 774 44 57778889999999883 222 233455555544 468899999988
Q ss_pred CEEEEE-eCCcEEEEECC-----CCceeeeecCCCCCCCeEEEEEe--cCCC-EEEEEE-cCCeEEEEECC-CCeEEEEe
Q 003871 650 IHLLSI-HEGQIDVYEAP-----TLNHTSQLVPDKMDLPITYATYS--CDGK-CIYVSC-KSGHVKVFDTS-TLELRCQI 718 (790)
Q Consensus 650 ~~l~~~-~dg~I~iwd~~-----~~~~~~~~~~~~h~~~v~~l~~s--~dg~-~l~sgs-~dg~i~vwd~~-~~~~~~~~ 718 (790)
..|+++ .+..|..+|.+ +++.+..+....-...+..+++- ++++ ||++++ .+++..+||.. +.+.+..|
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 889887 55557777754 34555554332224578888884 5666 777666 57899999997 67777777
Q ss_pred c
Q 003871 719 N 719 (790)
Q Consensus 719 ~ 719 (790)
.
T Consensus 272 ~ 272 (355)
T 3amr_A 272 R 272 (355)
T ss_dssp E
T ss_pred E
Confidence 5
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.82 E-value=0.015 Score=67.60 Aligned_cols=230 Identities=10% Similarity=-0.030 Sum_probs=142.3
Q ss_pred CcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC----ceEEEEcCCCCCE
Q 003871 516 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK----KTKAKLKGHQNRI 589 (790)
Q Consensus 516 ~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~----~~~~~l~~h~~~v 589 (790)
..+|+.+....|+..++.......... ....+..++|++.+ ++++-...+.|+.+++... .....+.......
T Consensus 395 ~p~Ll~an~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 395 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp CCEEEEECBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccccccccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 345666666678888887655444433 34567789999865 4445556678999988742 2233333344567
Q ss_pred EEEEEeCCCCEEE-EEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--e-CCcEEEEEC
Q 003871 590 TCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-EGQIDVYEA 665 (790)
Q Consensus 590 ~~l~~spdg~~l~-s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~-dg~I~iwd~ 665 (790)
..|++.+.++.|+ +-...+.|.+.++.+... .. +..... .....|+++|.+.+|+.+ . .+.|...++
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~---~~---l~~~~l---~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---KT---LFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSE---EE---EEECTT---CCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeE---EE---EEeCCC---CCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 7899998775554 455678899999986321 11 111111 357899999987777664 2 367999998
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCC
Q 003871 666 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 744 (790)
Q Consensus 666 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d 744 (790)
. |.....+... .-.....|++++.+..|+.+. ..+.|...++........+... ..--++++++...
T Consensus 545 d-G~~~~~lv~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~--------~~l~~P~glav~~-- 612 (791)
T 3m0c_C 545 N-GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVFE-- 612 (791)
T ss_dssp T-SCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT--------TTTSSEEEEEEET--
T ss_pred C-CCceEEEEeC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCC--------CccCCCCEEEEeC--
Confidence 6 4444444321 246789999998777776654 4578999999766544443211 1111244676644
Q ss_pred CCEEEEEeCCCcEEEEecCCCcc
Q 003871 745 PNRIALGLTNGRVHVIEPLESEV 767 (790)
Q Consensus 745 ~~~las~s~Dg~i~iW~~~~~~~ 767 (790)
+.++++-...+.|...+..+|+.
T Consensus 613 ~~lYwtD~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 613 DKVFWTDIINEAIFSANRLTGSD 635 (791)
T ss_dssp TEEEEEETTTTEEEEEETTTCCC
T ss_pred CEEEEEECCCCEEEEEeCCCCcc
Confidence 34555555667888787666643
No 291
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.77 E-value=0.0075 Score=65.34 Aligned_cols=241 Identities=10% Similarity=0.023 Sum_probs=132.7
Q ss_pred ceEEEEEcCC--CCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec--CcE
Q 003871 443 RVVRLIYSHS--GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 518 (790)
Q Consensus 443 ~V~~l~~spd--g~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~ 518 (790)
....++|+|+ +..|+.+...+.|+.++..++ .+.... ........++++ |++
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g---------------------~v~~~~---~~~~~P~giavd~dG~l 195 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ---------------------YVDIKT---TNIGQCADVNFTLNGDM 195 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT---------------------EEEEEC---CCCSCEEEEEECTTCCE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC---------------------EEEEee---cCCCCccEEEECCCCCE
Confidence 4568899985 444666555477887776442 222211 234567889999 664
Q ss_pred EEEecCC-----eEEEEECCCCcE-EEEEcCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEEE-c-CCCCC
Q 003871 519 LFSASGG-----KISIFSLETFQT-LATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL-K-GHQNR 588 (790)
Q Consensus 519 l~s~sdg-----~I~vwd~~~~~~-~~~~~~~~~~v~~l~~s~-~g-~l~sgs~dg~I~iwd~~~~~~~~~l-~-~h~~~ 588 (790)
+++...+ .+...+...+.. ...+. .......++++| +| +.++-..++.|+.+|..++.....+ . +....
T Consensus 196 yVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~ 274 (433)
T 4hw6_A 196 VVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGS 274 (433)
T ss_dssp EEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSS
T ss_pred EEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCC
Confidence 4443321 233333322211 01121 123346688999 55 4445456778999999877663222 2 12223
Q ss_pred EEEEEEeCCCCEEEEE-eCCCcEEEEECCC--Cceeeceeeeeec--cCCCC------CCCCeEEEEE---------eCC
Q 003871 589 ITCLAYSLSLNVLVSS-GADAQLCVWDAVG--WKKLCSKFLHSFQ--TGLVP------ETTIVNHIQF---------HPD 648 (790)
Q Consensus 589 v~~l~~spdg~~l~s~-s~dg~I~vwd~~~--~~~~~~~~l~~~~--~~~~~------~~~~v~~i~~---------sp~ 648 (790)
-..++|+|++++|..+ ...+.|+.++... +.......+.... .+... .-.....+++ .++
T Consensus 275 ~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~ 354 (433)
T 4hw6_A 275 NFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE 354 (433)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC
T ss_pred cccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC
Confidence 3579999999955544 4567899988763 2211001111000 00000 0024667999 666
Q ss_pred CCEEEEE-eCCcEEEEECCCCceeeeecCCCC----------------CCCeEEEEEe-cCCCEEEEEEcCCeEEEEECC
Q 003871 649 QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKM----------------DLPITYATYS-CDGKCIYVSCKSGHVKVFDTS 710 (790)
Q Consensus 649 ~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h----------------~~~v~~l~~s-~dg~~l~sgs~dg~i~vwd~~ 710 (790)
|.+.++- ..+.|+.++. +|.. .++.+... -.....++++ ++|.++++-..++.|+.++++
T Consensus 355 g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 355 YDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 6655553 5678999986 4543 33332110 1346789999 566666665667788877654
No 292
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.74 E-value=0.03 Score=63.55 Aligned_cols=225 Identities=12% Similarity=-0.001 Sum_probs=143.5
Q ss_pred EEEEecCCeEEEEECCCCcEEEEEc-CCCCCeEEEEEcCCC-e-EEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEE
Q 003871 518 HLFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-L-FAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 594 (790)
Q Consensus 518 ~l~s~sdg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~g-~-l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~ 594 (790)
+|+.+..+.|+..++++......+. ..-..+..++|++.+ . +++-..++.|+.+++........+.........+++
T Consensus 8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAv 87 (628)
T 4a0p_A 8 FLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAV 87 (628)
T ss_dssp EEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEE
Confidence 5566667889999998765433332 123457799999876 4 445556789999998754433334333345778999
Q ss_pred eCCCCEE-EEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEe---CCcEEEEECCCCce
Q 003871 595 SLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---EGQIDVYEAPTLNH 670 (790)
Q Consensus 595 spdg~~l-~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~---dg~I~iwd~~~~~~ 670 (790)
.+.+..| ++-...+.|.+.++.+... ..+. .... .....++++|....|+.+. .+.|...++....
T Consensus 88 D~~~~~LY~tD~~~~~I~v~~~dG~~~---~~l~--~~~l----~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~- 157 (628)
T 4a0p_A 88 DWLGKNLYWADTGTNRIEVSKLDGQHR---QVLV--WKDL----DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE- 157 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSTTC---EEEE--CSSC----CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-
T ss_pred EeCCCEEEEEECCCCEEEEEecCCCcE---EEEE--eCCC----CCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-
Confidence 9865555 4445567899999876321 1111 1111 3578999999766666642 5678888886433
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEE
Q 003871 671 TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 749 (790)
Q Consensus 671 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~la 749 (790)
...+.. .......++++++++.|+.+. ..+.|..+|+..... ..+... . . .+.++++.. +.+.+
T Consensus 158 ~~~l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-----l--~---~P~glav~~--~~ly~ 222 (628)
T 4a0p_A 158 RTTLVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-----L--P---HPFGLTQYQ--DYIYW 222 (628)
T ss_dssp CEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-----C--S---CEEEEEEET--TEEEE
T ss_pred eEEEEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-----C--C---CceEEEEEC--CEEEE
Confidence 333332 256789999999877776654 468899999976544 333210 0 1 144777765 45555
Q ss_pred EEeCCCcEEEEecCCCcc
Q 003871 750 LGLTNGRVHVIEPLESEV 767 (790)
Q Consensus 750 s~s~Dg~i~iW~~~~~~~ 767 (790)
+-...+.|...+..+|+.
T Consensus 223 tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 223 TDWSRRSIERANKTSGQN 240 (628)
T ss_dssp EETTTTEEEEEETTTCCS
T ss_pred ecCCCCEEEEEECCCCCc
Confidence 555678888888777753
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=0.026 Score=61.36 Aligned_cols=253 Identities=9% Similarity=-0.069 Sum_probs=146.2
Q ss_pred CeEEEEec---CcEEEEec--CCeEEEEECCCCcEEEEEcCC---CCCeEEEEE-------cCCC-eEEEEeCCC-----
Q 003871 508 SISCFALR---GSHLFSAS--GGKISIFSLETFQTLATFANP---PPIATYFIL-------LPQD-LFAFGFDDS----- 566 (790)
Q Consensus 508 ~V~~l~~s---~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~---~~~v~~l~~-------s~~g-~l~sgs~dg----- 566 (790)
....|+|+ +..|+.+. .+.|++.|.+++......... ......++| +++| .++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 45677887 24455555 367999999876665544322 235789999 9999 677766554
Q ss_pred --cEEEEeCCC-CceE-----EEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECC-------CCcee-----e---
Q 003871 567 --SILVHCPCT-KKTK-----AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAV-------GWKKL-----C--- 622 (790)
Q Consensus 567 --~I~iwd~~~-~~~~-----~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~-------~~~~~-----~--- 622 (790)
.|.+++... +... ..+... .....++++| ++.++++-..++.|..+|+. ++..- .
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366776443 2221 122211 2345778899 45556666678889999997 44320 0
Q ss_pred -ceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEEC--CCCce--eeeecCC----C---------CCCC
Q 003871 623 -SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEA--PTLNH--TSQLVPD----K---------MDLP 682 (790)
Q Consensus 623 -~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~--~~~~~--~~~~~~~----~---------h~~~ 682 (790)
...+..+... .....++|+|+|+.|+++ ..+.|+.+|. .++.. ...+.+. . .-..
T Consensus 299 ~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 299 TFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN 373 (496)
T ss_dssp TEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred ccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence 0111112221 356899999999976665 5677888664 33321 1122110 0 0122
Q ss_pred eE-EEEEe-------cCCCEEEEEEcCCeEEEEECCCCeEEEEecccccc-------CCCCccc-------ccceEEEEE
Q 003871 683 IT-YATYS-------CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA-------QPGTISL-------ELYPLVIAA 740 (790)
Q Consensus 683 v~-~l~~s-------~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~-------~~gh~~~-------~v~~~~v~~ 740 (790)
.. .++.. ++|.++++=..+..|+.++ .+|. +.++...... ..|...+ --.+.++++
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred CeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 44 45554 4667777767789999999 4564 3444322100 0021111 123668999
Q ss_pred ecCCCCEEEEEeCCCcEEEEecCCCccc
Q 003871 741 HPLEPNRIALGLTNGRVHVIEPLESEVE 768 (790)
Q Consensus 741 sp~d~~~las~s~Dg~i~iW~~~~~~~~ 768 (790)
++.++.+.++=..+.+||.+++......
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 9932666676667789999998766533
No 294
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.61 E-value=0.00039 Score=80.45 Aligned_cols=202 Identities=8% Similarity=-0.047 Sum_probs=119.4
Q ss_pred CCeEEEEec--CcEEEEec--CCeEEEEECCC----CcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC
Q 003871 507 DSISCFALR--GSHLFSAS--GGKISIFSLET----FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 576 (790)
Q Consensus 507 ~~V~~l~~s--~~~l~s~s--dg~I~vwd~~~----~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~ 576 (790)
..+..++|. ++.|+.+. .+.|+.+++.+ ......+.........+++.+.+ ++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 445678887 56666655 68899999875 22222221112234567887555 4444456678999998754
Q ss_pred ceEEEEcCCCCCEEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE
Q 003871 577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (790)
Q Consensus 577 ~~~~~l~~h~~~v~~l~~spdg~~l~s~s~--dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~ 654 (790)
.....+.........++++|++.+|+.+.. .+.|.++++..... .. +....- .....|+|+|++..|+.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~---~~---l~~~~l---~~PnGlavd~~~~~LY~ 556 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YS---LVTENI---QWPNGITLDLLSGRLYW 556 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC---CE---ESCSSC---SSCCCEEECTTTCCEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe---eE---EEeCCC---CCccEEEEeccCCEEEE
Confidence 433333322345678899996555554432 26788888765211 11 111111 35678999998776666
Q ss_pred E--eCCcEEEEECCCCceeeeecCC-CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003871 655 I--HEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 719 (790)
Q Consensus 655 ~--~dg~I~iwd~~~~~~~~~~~~~-~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~ 719 (790)
+ ..+.|..+|+.. .....+... ........+++..+ .++++....+.|..++..+|+.+..+.
T Consensus 557 aD~~~~~I~~~d~dG-~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 557 VDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EETTTTEEEEECSSS-SCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EecCCCeEEEEccCC-CceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 4 567899999864 333333221 11233455666544 444455567899999999998777664
No 295
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.60 E-value=0.09 Score=63.95 Aligned_cols=341 Identities=10% Similarity=-0.005 Sum_probs=180.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeccC-CCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEc--CCCCEEEEEeC
Q 003871 385 DSSCFNDNNQSRESTSLPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS--HSGDFLVALTQ 461 (790)
Q Consensus 385 ~~~~fs~~~~~~s~dg~~la~~~at~s~-d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~s--pdg~~l~s~~~ 461 (790)
.|+++. +. ++|+.-++.+|.|.. |++++|+++.. ...+....++. .....++.+. ....+|..|-.
T Consensus 557 scl~i~-~~----~~~~~~s~~~aVg~~~d~tv~I~sL~~---l~~~~~~~L~~---~~~p~si~l~~~~~~~~L~igl~ 625 (1158)
T 3ei3_A 557 ACLDIT-PL----GDSNGLSPLCAIGLWTDISARILKLPS---FELLHKEMLGG---EIIPRSILMTTFESSHYLLCALG 625 (1158)
T ss_dssp EEEECC-CC----SSSTTCCSEEEEEETTTTEEEEEETTT---CCEEEEEECCS---SCCEEEEEEEEETTEEEEEEEET
T ss_pred EEEEee-cC----CCCcccccEEEEEECCCCEEEEEECCC---CCeEEEEECCC---CCCCcEEEEEEeCCCcEEEEEeC
Confidence 788875 32 334333333488886 99999999974 23332223321 2233444332 23467888888
Q ss_pred CCcEEEEecCC--CCc------ccccccccc----------------cc-ccccCCCceeeeecccCCCCCCe-EEEEec
Q 003871 462 TATHKLWKWQS--NKQ------SLEEENVNM----------------ES-QLYQPSSKLVMTNDIAADPKDSI-SCFALR 515 (790)
Q Consensus 462 dg~i~vw~~~~--~~~------~~g~~~~~~----------------~~-~i~~~~~~~~~~~~~~~~~~~~V-~~l~~s 515 (790)
||.+.-+.++. +.. ..|.....+ .| .++.. .+.+.-... ....+ ....|+
T Consensus 626 dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~-~~~l~~s~l---~~~~v~~~~~F~ 701 (1158)
T 3ei3_A 626 DGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSS-NHKLVFSNV---NLKEVNYMCPLN 701 (1158)
T ss_dssp TSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEES-SSSEEEEEB---SSSCCCEEEEEC
T ss_pred CCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEc-CCceEEecc---ChHHhceEeccC
Confidence 99887666553 222 111110000 00 01111 111110000 11122 233344
Q ss_pred ----CcEEEEecCCeEEEEECCCCc--EEEEEcCCCCCeEEEEEcCCC-eEEEEeC------------------------
Q 003871 516 ----GSHLFSASGGKISIFSLETFQ--TLATFANPPPIATYFILLPQD-LFAFGFD------------------------ 564 (790)
Q Consensus 516 ----~~~l~s~sdg~I~vwd~~~~~--~~~~~~~~~~~v~~l~~s~~g-~l~sgs~------------------------ 564 (790)
.+-++..+++.+++..+++.. .++++. -...+..++++|+. .++.+..
T Consensus 702 se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1158)
T 3ei3_A 702 SDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALS 780 (1158)
T ss_dssp CSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSE
T ss_pred cccCCCcEEEEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhh
Confidence 334555555668888775432 223332 34566788888876 3332221
Q ss_pred -------------------------CCcEEEEeCCCCceEEEEcC-CCCCEEEEE---EeCC-CCEEEEEe---------
Q 003871 565 -------------------------DSSILVHCPCTKKTKAKLKG-HQNRITCLA---YSLS-LNVLVSSG--------- 605 (790)
Q Consensus 565 -------------------------dg~I~iwd~~~~~~~~~l~~-h~~~v~~l~---~spd-g~~l~s~s--------- 605 (790)
-+.|++.|..+.+.+..+.- ....+.+++ |..+ ..+++.|.
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~ 860 (1158)
T 3ei3_A 781 SSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAE 860 (1158)
T ss_dssp EEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSS
T ss_pred hcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCC
Confidence 02466777777666555432 123344544 3322 46888876
Q ss_pred -CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeE
Q 003871 606 -ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPIT 684 (790)
Q Consensus 606 -~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~ 684 (790)
..|.|.+|++..++. +.+..... . +++++++-- +| +|+++....|++|++...+.++ .... +-..+.
T Consensus 861 ~~~Gri~vf~v~~~kL---~lv~~~~v--~---g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~-~~~~i~ 928 (1158)
T 3ei3_A 861 PKQGRIVVFQYSDGKL---QTVAEKEV--K---GAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECN-HYNNIM 928 (1158)
T ss_dssp CCCEEEEEEEEETTEE---EEEEEEEE--S---SCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEE-ECCCSC
T ss_pred CCceEEEEEEEECCEE---EEEEEEEc--C---CcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEee-ccccEE
Confidence 347899999874332 22221111 1 578887644 24 6777777899999998665443 1111 111233
Q ss_pred EEEEecCCCEEEEEEcCCeEEEE--ECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEec
Q 003871 685 YATYSCDGKCIYVSCKSGHVKVF--DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 762 (790)
Q Consensus 685 ~l~~s~dg~~l~sgs~dg~i~vw--d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~ 762 (790)
.+.....+++++.|..-..|.++ +...+++...-. ...+.+++++.+-. + ..++.+..+|.+.+...
T Consensus 929 ~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~---------D~~~~~vta~~~ld-~-~t~l~aD~~gNl~vl~~ 997 (1158)
T 3ei3_A 929 ALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR---------DFNPNWMSAVEILD-D-DNFLGAENAFNLFVCQK 997 (1158)
T ss_dssp EEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE---------CCSCBCEEEEEEEE-T-TEEEEEETTSEEEEEEE
T ss_pred EEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe---------ecccccEEEEEEEc-c-CcEEEEcCCCcEEEEec
Confidence 33444457889999877776665 444555443322 12234455888765 3 47777899999999877
Q ss_pred CC
Q 003871 763 LE 764 (790)
Q Consensus 763 ~~ 764 (790)
..
T Consensus 998 ~~ 999 (1158)
T 3ei3_A 998 DS 999 (1158)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 296
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.59 E-value=0.0075 Score=65.33 Aligned_cols=154 Identities=10% Similarity=0.041 Sum_probs=98.3
Q ss_pred CeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCC-C----cEEEEECCCCc
Q 003871 547 IATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-A----QLCVWDAVGWK 619 (790)
Q Consensus 547 ~v~~l~~s~-~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d-g----~I~vwd~~~~~ 619 (790)
....++++| ++ .|+++...+.|+.+|+.++....... .......++++++|++|+.+... + .+.+++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 346889998 45 66666555889999998765443333 44568899999999966665542 2 34444433 22
Q ss_pred eeeceeeeeeccCCCCCCCCeEEEEEeC-CCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEE
Q 003871 620 KLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 697 (790)
Q Consensus 620 ~~~~~~l~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 697 (790)
......+. .. .....++++| ++.++++. .++.|+.+|..++......... .......++|+|+|++|+.
T Consensus 216 ~~~~~~l~---~~-----~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 216 FKVITELT---KG-----QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp SCSEEEEE---EC-----SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS-SSSCCEEEEECTTSSEEEE
T ss_pred eeeeeeec---cC-----CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-CCCcceeEEEcCCCCEEEE
Confidence 21111222 11 2457789999 66655554 6788999999866542222221 1345789999999996555
Q ss_pred E-EcCCeEEEEECCC
Q 003871 698 S-CKSGHVKVFDTST 711 (790)
Q Consensus 698 g-s~dg~i~vwd~~~ 711 (790)
+ ...+.|+.++...
T Consensus 287 ~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 287 VVVNQHYILRSDYDW 301 (430)
T ss_dssp EETTTTEEEEEEEET
T ss_pred EECCCCEEEEEeCCc
Confidence 4 4578899988763
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.53 E-value=0.019 Score=58.58 Aligned_cols=162 Identities=14% Similarity=0.038 Sum_probs=107.0
Q ss_pred CeEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCceEEE-EcC----CC--CCEEEEEE---eCCCCEEEEEe---------
Q 003871 547 IATYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAK-LKG----HQ--NRITCLAY---SLSLNVLVSSG--------- 605 (790)
Q Consensus 547 ~v~~l~~s~~g-~l~sgs-~dg~I~iwd~~~~~~~~~-l~~----h~--~~v~~l~~---spdg~~l~s~s--------- 605 (790)
--.+++|++.. .+..++ ..++|..||...+..... +.+ .. ..+..+.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 34578998866 555555 789999999976644333 322 11 13679999 68887777543
Q ss_pred ----CCCcEEEEECC---CCceeeceeeeeeccC------CCCCCCCeEEEEEeCCCCEEEE-EeC-CcEEEEECCCCce
Q 003871 606 ----ADAQLCVWDAV---GWKKLCSKFLHSFQTG------LVPETTIVNHIQFHPDQIHLLS-IHE-GQIDVYEAPTLNH 670 (790)
Q Consensus 606 ----~dg~I~vwd~~---~~~~~~~~~l~~~~~~------~~~~~~~v~~i~~sp~~~~l~~-~~d-g~I~iwd~~~~~~ 670 (790)
.+..+..||+. +++......+.....+ ... .....++..++|+..++ +.. +.|..++.. |+.
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~--~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~ 170 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP--FGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKT 170 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC--EEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCC
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccc--cCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCE
Confidence 26779999999 6654433332211111 010 25789999999998887 466 778888875 333
Q ss_pred eeeecCC----CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 671 TSQLVPD----KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 671 ~~~~~~~----~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
+..+... ......+.++++|+|+.|++...+|.+..+|+.+
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 3332211 1133477999999999888887799999999884
No 298
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.52 E-value=0.13 Score=58.32 Aligned_cols=199 Identities=9% Similarity=-0.061 Sum_probs=126.9
Q ss_pred CCCeEEEEec--CcEEEEec--CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceE
Q 003871 506 KDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK 579 (790)
Q Consensus 506 ~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sgs~dg~I~iwd~~~~~~~ 579 (790)
-..+..++|+ ++.|+.+. ++.|..+++........+.........+++.+.+ +.++-...+.|.+.++......
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~ 115 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ 115 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE
Confidence 3467789998 55555554 7899999987554433443333446788888766 4445555678999998754332
Q ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--
Q 003871 580 AKLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-- 655 (790)
Q Consensus 580 ~~l~~h~~~v~~l~~spdg~~l~s~s~--dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-- 655 (790)
..+...-....++++.|....|..... .+.|...++..... .. +...- .....+++++++..|+.+
T Consensus 116 ~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~---~~---l~~~~----~~P~GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 116 VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER---TT---LVPNV----GRANGLTIDYAKRRLYWTDL 185 (628)
T ss_dssp EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EE---EECSC----SSEEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce---EE---EECCC----CCcceEEEccccCEEEEEEC
Confidence 223234456789999996555555542 56788888876331 11 11121 467899999988888775
Q ss_pred eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 003871 656 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 656 ~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~ 718 (790)
..+.|..+|+..... ..+.. .......+++.. +..+++-...+.|...|..+|+....+
T Consensus 186 ~~~~I~~~d~dG~~~-~v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 186 DTNLIESSNMLGLNR-EVIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp TTTEEEEEETTSCSC-EEEEE--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCEEEEEcCCCCce-EEeec--cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 567899999865433 33322 234566888765 444445445789999998777654443
No 299
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.44 E-value=0.43 Score=58.04 Aligned_cols=304 Identities=12% Similarity=0.014 Sum_probs=162.8
Q ss_pred eeccCCCceEeeeccccCCCCceeeeeccCCCCCCceEEEEEcCC------CCEEEEEeC-CCcEEEEecCCCCcccccc
Q 003871 408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS------GDFLVALTQ-TATHKLWKWQSNKQSLEEE 480 (790)
Q Consensus 408 at~s~d~~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~l~~spd------g~~l~s~~~-dg~i~vw~~~~~~~~~g~~ 480 (790)
+.++ ++.+.++++++. +-....+.. -...|.|+++.|. +++++.|.. |++++|+++.+...
T Consensus 527 vva~-g~~l~~fel~~~-~L~~~~~~~-----l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~----- 594 (1158)
T 3ei3_A 527 VVAV-GRALYYLQIHPQ-ELRQISHTE-----MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL----- 594 (1158)
T ss_dssp EEEE-TTEEEEEEEETT-EEEEEEEEE-----CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE-----
T ss_pred EEEE-CCEEEEEEeeCC-ceeeecccC-----CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe-----
Confidence 4443 577888877631 001112222 2568999999863 468999986 99999999875322
Q ss_pred ccccccccccCCCceeeeecccCCCCCCeEEEEec----CcEEEEec-CCeEEEEEC--CCCcEEEE--EcCCCCCeEEE
Q 003871 481 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSL--ETFQTLAT--FANPPPIATYF 551 (790)
Q Consensus 481 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s----~~~l~s~s-dg~I~vwd~--~~~~~~~~--~~~~~~~v~~l 551 (790)
+....+ +......++.+. ..+|..|- ||.+.-+.+ .+|+.... ..-...++.-.
T Consensus 595 ---------------~~~~~L--~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~ 657 (1158)
T 3ei3_A 595 ---------------LHKEML--GGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLR 657 (1158)
T ss_dssp ---------------EEEEEC--CSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEE
T ss_pred ---------------EEEEEC--CCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEE
Confidence 000001 112234444444 33566665 887655544 45544322 22123455444
Q ss_pred EEcCCC--eEEEEeCCCcEEEEeCCCCceEEEEcCCCCCE-EEEEEeCC--CCEEEEEeCCCcEEEEECCCCceeeceee
Q 003871 552 ILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-TCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFL 626 (790)
Q Consensus 552 ~~s~~g--~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v-~~l~~spd--g~~l~s~s~dg~I~vwd~~~~~~~~~~~l 626 (790)
.+...| .+++.+ +....+|.-+ ++.... .-....+ ....|+.. ..-++..+ ++.+++..+..-. ...+
T Consensus 658 ~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~---~~~~ 730 (1158)
T 3ei3_A 658 TFRSLSTTNVFACS-DRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQ---KLHI 730 (1158)
T ss_dssp EEESSSCEEEEEES-SSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSS---SEEE
T ss_pred EEeeCCceeEEEEC-CCCEEEEEcC-CceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccC---CeeE
Confidence 454445 333333 4444444433 332211 1111223 23345432 23355444 5669998886532 2334
Q ss_pred eeeccCCCCCCCCeEEEEEeCCCCEEEEE---eC----------------------------------------------
Q 003871 627 HSFQTGLVPETTIVNHIQFHPDQIHLLSI---HE---------------------------------------------- 657 (790)
Q Consensus 627 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~---~d---------------------------------------------- 657 (790)
++++-+ ..+..++++|+.+.++++ .+
T Consensus 731 ~~ipL~-----~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 805 (1158)
T 3ei3_A 731 RTVPLY-----ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVE 805 (1158)
T ss_dssp EEEECS-----SEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEE
T ss_pred EEEeCC-----CCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCcee
Confidence 444444 467889999887766542 10
Q ss_pred -CcEEEEECCCCceeeeecCCCCCCCeEEEE---EecC-CCEEEEEE----------cCCeEEEEECCCCeEEEEecccc
Q 003871 658 -GQIDVYEAPTLNHTSQLVPDKMDLPITYAT---YSCD-GKCIYVSC----------KSGHVKVFDTSTLELRCQINLTA 722 (790)
Q Consensus 658 -g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~---~s~d-g~~l~sgs----------~dg~i~vwd~~~~~~~~~~~~~~ 722 (790)
+.|++.|..+.+.+..+.-.. ...+.+++ |..+ ..+++.|+ ..|.|++|++..+++.......
T Consensus 806 ~s~i~lidp~t~~~i~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~- 883 (1158)
T 3ei3_A 806 VHNLLIIDQHTFEVLHAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE- 883 (1158)
T ss_dssp EEEEEEEETTTCCEEEEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE-
T ss_pred eEEEEEEeCCCCeEEEEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE-
Confidence 236778877777776665432 44455554 3322 46888876 2488999999866544332211
Q ss_pred ccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 723 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 723 ~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
..+.++ +++-- +|.+||+. ..+|++|++...+
T Consensus 884 ------v~g~v~--al~~~--~g~Lla~i--g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 884 ------VKGAVY--SMVEF--NGKLLASI--NSTVRLYEWTTEK 915 (1158)
T ss_dssp ------ESSCEE--EEEEE--TTEEEEEE--TTEEEEEEECTTS
T ss_pred ------cCCcCE--EEeee--CCEEEEEc--CCEEEEEECCCCc
Confidence 133555 55533 35444443 4789999997654
No 300
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.39 E-value=0.086 Score=53.68 Aligned_cols=201 Identities=11% Similarity=0.005 Sum_probs=123.0
Q ss_pred CCeEEEEec--CcEEEEec--CCeEEEEECCCCcEEEE-EcC----CCC--CeEEEEE---cCCC-eEEEEe--------
Q 003871 507 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLAT-FAN----PPP--IATYFIL---LPQD-LFAFGF-------- 563 (790)
Q Consensus 507 ~~V~~l~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~-~~~----~~~--~v~~l~~---s~~g-~l~sgs-------- 563 (790)
.-..+++|. +..+..++ .++|..|+...+..... +.. ... .+..+.| .|++ ++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 334567887 55666666 89999999986644333 221 111 3578999 6888 655433
Q ss_pred -----CCCcEEEEeCC---CCceEEEEc--CC-----------CCCEEEEEEeCCCCEEEEEeCC-CcEEEEECCCCcee
Q 003871 564 -----DDSSILVHCPC---TKKTKAKLK--GH-----------QNRITCLAYSLSLNVLVSSGAD-AQLCVWDAVGWKKL 621 (790)
Q Consensus 564 -----~dg~I~iwd~~---~~~~~~~l~--~h-----------~~~v~~l~~spdg~~l~s~s~d-g~I~vwd~~~~~~~ 621 (790)
.+..|..||+. +++.+.... .. ....+.++..++|+..++++.. +.|...+.......
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS 172 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence 25779999999 777665443 11 1248899999999999999888 88888887753211
Q ss_pred eceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eCCcEEEEECCCCce--eeeec-CC-CCCCCeEEE-EEecCCCE-
Q 003871 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH--TSQLV-PD-KMDLPITYA-TYSCDGKC- 694 (790)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~dg~I~iwd~~~~~~--~~~~~-~~-~h~~~v~~l-~~s~dg~~- 694 (790)
...+. .+.... ....+.|+++|+|..|++. ..+.+..+|+.+... +..-. +. ........+ ..-.+|+.
T Consensus 173 -~~~~~-~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 173 -TFAWE-SGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp -EEEEC-CCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred -eeeec-CCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 11111 111111 1357799999999988884 588999999874322 11100 11 011223443 33457887
Q ss_pred EEEEEcCCeEEEEECCC
Q 003871 695 IYVSCKSGHVKVFDTST 711 (790)
Q Consensus 695 l~sgs~dg~i~vwd~~~ 711 (790)
+++.+..+.+.+.+.+.
T Consensus 249 lV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEETTEEEEEECSST
T ss_pred EEEcCCCCEEEEECCCC
Confidence 44555566666665554
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.33 E-value=0.00052 Score=79.39 Aligned_cols=228 Identities=12% Similarity=0.004 Sum_probs=131.4
Q ss_pred EEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEE-eCCCcEEEEeCCC----CceEEEEcCCCCCEEE
Q 003871 518 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-FDDSSILVHCPCT----KKTKAKLKGHQNRITC 591 (790)
Q Consensus 518 ~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg-s~dg~I~iwd~~~----~~~~~~l~~h~~~v~~ 591 (790)
+|+.+..+.|+..++.+.+....+.. ...+..++|++.+ .|+.+ ...+.|+.+++.+ ......+.........
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 457 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred eEEecCccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence 44444556788888876655443332 3345688999876 55544 4567899999875 2222222211223556
Q ss_pred EEEeCCC-CEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--e-CCcEEEEECCC
Q 003871 592 LAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-EGQIDVYEAPT 667 (790)
Q Consensus 592 l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~-dg~I~iwd~~~ 667 (790)
+++.+.+ +++++-...+.|.++++.+.... .+ +..+. .....++++|.+.+|+.+ . .+.|..+++.
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~---~l--~~~~~----~~P~giavDp~~g~ly~td~~~~~~I~~~~~d- 527 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRK---TL--FREQG----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN- 527 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSSSCCEE---EE--CCCSS----CCCCCEECCSSSSCCEECCCSSSCCEEBCCSS-
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecCCCceE---EE--EeCCC----CCcceEEEccCCCcEEEcccCCCCeEEEEeCC-
Confidence 8888644 44444455788999998763211 11 11111 245788999977666653 2 3678888875
Q ss_pred CceeeeecCCCCCCCeEEEEEecCCCEEEEE-EcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCC
Q 003871 668 LNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 746 (790)
Q Consensus 668 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg-s~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 746 (790)
+.....+... .......|+|+|++..|+.+ +..+.|.++++........+.... ....+.++++.. +.
T Consensus 528 G~~~~~l~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~--------~~~~P~glavd~--~~ 596 (699)
T 1n7d_A 528 GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK--------RLAHPFSLAVFE--DK 596 (699)
T ss_dssp SCCCCEESCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSS--------SCSSCCCCEEET--TE
T ss_pred CCCeeEEEeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCC--------cCCCceEeEEEC--CE
Confidence 3333333221 23456789999986655544 456789999997644333322110 011133555555 35
Q ss_pred EEEEEeCCCcEEEEecCCCcc
Q 003871 747 RIALGLTNGRVHVIEPLESEV 767 (790)
Q Consensus 747 ~las~s~Dg~i~iW~~~~~~~ 767 (790)
++++....+.|..++..+|+.
T Consensus 597 lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 597 VFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp EEEECSTTTCEEEEETTTEEE
T ss_pred EEEEeCCCCeEEEEEccCCCc
Confidence 556666678999998876653
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.23 E-value=0.041 Score=59.87 Aligned_cols=211 Identities=13% Similarity=-0.019 Sum_probs=120.2
Q ss_pred CeEEEEEcCC-C-eEEEE-eCCCcEEEEeCCCCceEEEEcCC---CCCEEEEEE-------eCCCCEEEEEeCCC-----
Q 003871 547 IATYFILLPQ-D-LFAFG-FDDSSILVHCPCTKKTKAKLKGH---QNRITCLAY-------SLSLNVLVSSGADA----- 608 (790)
Q Consensus 547 ~v~~l~~s~~-g-~l~sg-s~dg~I~iwd~~~~~~~~~l~~h---~~~v~~l~~-------spdg~~l~s~s~dg----- 608 (790)
....++|+|. + .|+++ ...+.|++.|..++......... ......++| +++|++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4578999994 4 44444 44467999999877665444332 235899999 99999777666554
Q ss_pred --cEEEEECCC-CceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-E-eCCcEEEEECC-------CCce------
Q 003871 609 --QLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP-------TLNH------ 670 (790)
Q Consensus 609 --~I~vwd~~~-~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~-~dg~I~iwd~~-------~~~~------ 670 (790)
.|.+++... +..........+... .....++++|++..|++ . .++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred CceEEEEecCCCCceeecccceeeccC-----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 266666443 222100000111111 23457889996555555 4 67789999987 5543
Q ss_pred -----eeeecCCCCCCCeEEEEEecCCCEEEEE-EcCCeEEEEECC--CCeEE--EEeccccccCCCCccc-----c-cc
Q 003871 671 -----TSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTS--TLELR--CQINLTAYAQPGTISL-----E-LY 734 (790)
Q Consensus 671 -----~~~~~~~~h~~~v~~l~~s~dg~~l~sg-s~dg~i~vwd~~--~~~~~--~~~~~~~~~~~gh~~~-----~-v~ 734 (790)
...+...........++|+|+|++|+.+ +....|+.++.. ++.+. ..+.... -..|..++ . -.
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~-g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY-KQSGYRDDVGTEARMNN 373 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT-TBCCCBCCBGGGCBCSS
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC-CCCcccCCcccccccCC
Confidence 1122111124557899999999965555 456789886653 34321 2222110 00121111 0 11
Q ss_pred eE-EEEEe-------cCCCCEEEEEeCCCcEEEEecCCC
Q 003871 735 PL-VIAAH-------PLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 735 ~~-~v~~s-------p~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
+. .++.. + ++.+.++-..+++|+.++. +|
T Consensus 374 P~~gv~vd~~~~~~~~-~g~lyVaD~~N~rIr~i~~-~G 410 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEE-EYDFYFVDRLNFCVRKVTP-EG 410 (496)
T ss_dssp EEEEEEEECTTCCSSC-CEEEEEEEGGGTEEEEECT-TC
T ss_pred CeEEEEEccccccccC-CCeEEEEECCCCEEEEEeC-CC
Confidence 33 34443 3 5677777777889999984 44
No 303
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.22 E-value=0.22 Score=50.22 Aligned_cols=237 Identities=10% Similarity=0.056 Sum_probs=144.9
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEecCC
Q 003871 447 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGG 525 (790)
Q Consensus 447 l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~sdg 525 (790)
.-.+|..+.+|.-. ..++.++|+++... +.... ....|.--.|- .+.|+...+.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~k--------------------lks~~----~~e~VvfWkWis~~~L~lVT~t 126 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSK--------------------MKAHT----MTDDVTFWKWISLNTVALVTDN 126 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEE--------------------EEEEE----CSSCEEEEEECSSSEEEEEESS
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhh--------------------hccee----cCCccEEEEecCCCeEEEEcCC
Confidence 34588888665554 68899999886433 22222 34577777777 8889988999
Q ss_pred eEEEEECCC-CcEEEEEcCC----CCCeEEEEEcCCC--eEEEEe------CCCcEEEEeCCCCceEEEEcCCCCCEEEE
Q 003871 526 KISIFSLET-FQTLATFANP----PPIATYFILLPQD--LFAFGF------DDSSILVHCPCTKKTKAKLKGHQNRITCL 592 (790)
Q Consensus 526 ~I~vwd~~~-~~~~~~~~~~----~~~v~~l~~s~~g--~l~sgs------~dg~I~iwd~~~~~~~~~l~~h~~~v~~l 592 (790)
.|.-|+++. ..+.+.+..| ...|..-..+++. .+++|- -.|.+.+|..+. +..+.++||...-..+
T Consensus 127 aVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~ 205 (365)
T 2xzh_A 127 AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQF 205 (365)
T ss_dssp EEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEE
T ss_pred cEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEEE
Confidence 999999974 4566666654 3456677778888 444443 235788999874 4566788886544333
Q ss_pred EEeC--C-CCEEEEEeC---CCcEEEEECCCC---c-eeeceeeee-eccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcE
Q 003871 593 AYSL--S-LNVLVSSGA---DAQLCVWDAVGW---K-KLCSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI 660 (790)
Q Consensus 593 ~~sp--d-g~~l~s~s~---dg~I~vwd~~~~---~-~~~~~~l~~-~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I 660 (790)
...- . .+.++.+.. .+.+++-++... . ....+.+.- ++.... .+-.-++..++.-..++. ..-|.|
T Consensus 206 ~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~--~DFPVamqvs~kygviyviTK~G~i 283 (365)
T 2xzh_A 206 KMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ--NDFPVAMQISEKHDVVFLITKYGYI 283 (365)
T ss_dssp CCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCT--TCCEEEEEEETTTTEEEEEETTSEE
T ss_pred ecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCcccc--CCceEEEEecccCCEEEEEeCCcEE
Confidence 2211 1 123443333 258889888542 1 111111110 111111 145667888887767766 688999
Q ss_pred EEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003871 661 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 661 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~ 713 (790)
++||++++.++..-... ...|...+-+.+..-+++....|.|.--.++...
T Consensus 284 hlyDleTgt~i~~nrIS--~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 284 HLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEETTTCCEEEEEECC--SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred EEEEcccCcEEEEeccC--CCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 99999999998665442 4555555554444445555567766666555544
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.21 E-value=0.17 Score=52.98 Aligned_cols=228 Identities=10% Similarity=0.049 Sum_probs=123.3
Q ss_pred CCeEEEEec--CcEEEEecCCeEEEEECCCCc-EEEEEc---CCCCCeEEEEEcCC----CeEEEEeC----C----CcE
Q 003871 507 DSISCFALR--GSHLFSASGGKISIFSLETFQ-TLATFA---NPPPIATYFILLPQ----DLFAFGFD----D----SSI 568 (790)
Q Consensus 507 ~~V~~l~~s--~~~l~s~sdg~I~vwd~~~~~-~~~~~~---~~~~~v~~l~~s~~----g~l~sgs~----d----g~I 568 (790)
.....++|. |+++++-.+|.|.+++. +++ .+..+. ........++++|+ +.|+++.. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 456789998 55445444899999974 454 222221 12346789999998 44433332 3 567
Q ss_pred EEEeCCCC--c-----e-EEEEcC-CCCCEEEEEEeCCCCEEEEEeC-------------CCcEEEEECCCCceeece--
Q 003871 569 LVHCPCTK--K-----T-KAKLKG-HQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKLCSK-- 624 (790)
Q Consensus 569 ~iwd~~~~--~-----~-~~~l~~-h~~~v~~l~~spdg~~l~s~s~-------------dg~I~vwd~~~~~~~~~~-- 624 (790)
..|+...+ . . +..+.. .......++|.|||.+.++.+. .+.|.-+|.... .....
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCC
Confidence 78877644 1 1 111221 1112467999999987776443 145555555431 00000
Q ss_pred -eeeeeccCCCCCCCCeEEEEEeC-CCCEEEEE--eCC--cEEEEECCC--------C--------ceeeeecCCCCCCC
Q 003871 625 -FLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI--HEG--QIDVYEAPT--------L--------NHTSQLVPDKMDLP 682 (790)
Q Consensus 625 -~l~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~--~dg--~I~iwd~~~--------~--------~~~~~~~~~~h~~~ 682 (790)
....+..++. ....++|+| ++.++++- .++ .|.+..... + .++..+. .....
T Consensus 187 ~~~~i~a~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~~~a 260 (354)
T 3a9g_A 187 PNSPIWSYGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG--SETWA 260 (354)
T ss_dssp TTCCEEEECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT--TCCCC
T ss_pred CCCcEEEEccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC--CCCcC
Confidence 0111223343 467899999 67666652 222 244433210 0 1112221 11346
Q ss_pred eEEEEEe-------cCCCEEEEEEcCCeEEEEECCCC-eEE--EEeccccccCCCCcccccceEEEEEecCCCCEEEEEe
Q 003871 683 ITYATYS-------CDGKCIYVSCKSGHVKVFDTSTL-ELR--CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 752 (790)
Q Consensus 683 v~~l~~s-------~dg~~l~sgs~dg~i~vwd~~~~-~~~--~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s 752 (790)
...++|. .+|+++++....+.|...++... +.. ..+. . +. ... +..+++.| ||.+.++..
T Consensus 261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-----~-~~-~~r--p~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-----K-NV-FGR--LRDVVIDD-DGGILISTS 330 (354)
T ss_dssp EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-----T-TT-SCC--EEEEEECT-TSCEEEEEC
T ss_pred CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-----c-CC-CCC--eeEEEECC-CCcEEEEEe
Confidence 7888884 57777777777788988888753 332 1221 0 11 122 45899999 887776654
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.12 E-value=0.28 Score=49.46 Aligned_cols=225 Identities=14% Similarity=0.133 Sum_probs=142.1
Q ss_pred CcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCC-CceEEEEcCCC----CCEE
Q 003871 516 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAKLKGHQ----NRIT 590 (790)
Q Consensus 516 ~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~-~~~~~~l~~h~----~~v~ 590 (790)
.+.+|.-...++.++|+++.+.++.+.- ...|..=.|-.+..|+..+ +..|+-|++.. ..+.+.+..|. ..|.
T Consensus 78 ~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QII 155 (365)
T 2xzh_A 78 SKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQII 155 (365)
T ss_dssp SSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEE
T ss_pred ccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEE
Confidence 3445555578999999999998888874 4567666776555444333 45899999974 35666676553 4567
Q ss_pred EEEEeCCCCEEEEEeC-------CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCC-----CEEEEE---
Q 003871 591 CLAYSLSLNVLVSSGA-------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-----IHLLSI--- 655 (790)
Q Consensus 591 ~l~~spdg~~l~s~s~-------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~-----~~l~~~--- 655 (790)
.-..+++.++++..+- .|.+.+|..+.+. -+ ..++|. +.. ..+-.+| ..++.+
T Consensus 156 nY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ-~ieGha---a~F--~~~~~~g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 156 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQ-PIEGHA---ASF--AQFKMEGNAEESTLFCFAVRG 223 (365)
T ss_dssp EEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EE-EECCSE---EEE--EEECCTTCSSCEEEEEEEEEE
T ss_pred EEEECCCCCEEEEEeEeccCCccceeEEEEeecccc------cc-eeeeee---eee--EEEecCCCCCCceEEEEEEec
Confidence 7777889998775442 3678888887632 12 334554 122 2222222 233333
Q ss_pred -eCCcEEEEECCCC---c------eeeeecC-CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecccccc
Q 003871 656 -HEGQIDVYEAPTL---N------HTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA 724 (790)
Q Consensus 656 -~dg~I~iwd~~~~---~------~~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~ 724 (790)
..+.++|.++... . .+..+.+ ........++..|+.-..++.-+.-|.|++||+.+|.++..-...
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS--- 300 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--- 300 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC---
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC---
Confidence 1257999998432 1 1111222 222566788899988888999999999999999999988775432
Q ss_pred CCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 725 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 725 ~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
...|. ..+.+. ...=++.....|.|.--.+.+.
T Consensus 301 -----~d~iF--~ta~~~-~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 301 -----GETIF--VTAPHE-ATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp -----SSCEE--EEEEEG-GGTEEEEEETTCEEEEEEECTT
T ss_pred -----CCceE--EecccC-CCCcEEEEcCCCEEEEEEECcc
Confidence 44555 444444 2334555568887776666554
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.10 E-value=0.13 Score=53.70 Aligned_cols=227 Identities=10% Similarity=0.048 Sum_probs=117.5
Q ss_pred CCeEEEEec--CcEEEEecCCeEEEEECCCCcE--EEEEc---CCCCCeEEEEEcCC----CeEEEE-eCC-----CcEE
Q 003871 507 DSISCFALR--GSHLFSASGGKISIFSLETFQT--LATFA---NPPPIATYFILLPQ----DLFAFG-FDD-----SSIL 569 (790)
Q Consensus 507 ~~V~~l~~s--~~~l~s~sdg~I~vwd~~~~~~--~~~~~---~~~~~v~~l~~s~~----g~l~sg-s~d-----g~I~ 569 (790)
.....++|. |+++++-.+|.|.+++ +++. +..+. ........++++|+ +.|+++ +.. +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 356789998 6655554489999998 4432 22221 12346789999998 433333 322 5788
Q ss_pred EEeCCCCc-----e-EEEEc---CCCCCEEEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCceeec----
Q 003871 570 VHCPCTKK-----T-KAKLK---GHQNRITCLAYSLSLNVLVSSGAD-------------AQLCVWDAVGWKKLCS---- 623 (790)
Q Consensus 570 iwd~~~~~-----~-~~~l~---~h~~~v~~l~~spdg~~l~s~s~d-------------g~I~vwd~~~~~~~~~---- 623 (790)
.++...+. . +..+. +.......++|.|||.+.++.+.. +.|.-+|... .....
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 88876442 1 12233 111123689999999776664321 4565566543 10000
Q ss_pred ----eeeeeeccCCCCCCCCeEEEEEeC-CCCEEEEE--eCC-------cEEEEECCCCc------------------ee
Q 003871 624 ----KFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI--HEG-------QIDVYEAPTLN------------------HT 671 (790)
Q Consensus 624 ----~~l~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~--~dg-------~I~iwd~~~~~------------------~~ 671 (790)
.....+..++. ....++|+| ++.++++- .+. .|.+.. .+. ++
T Consensus 188 ~~~~~~~~i~a~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 188 GRRGARPEVYSLGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTSCTTEEEECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCCccEEEEcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCe
Confidence 00111122332 466789999 66666552 232 244332 221 11
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE-EeccccccCCCCcccccceEEEEEecCCCCEEEE
Q 003871 672 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 750 (790)
Q Consensus 672 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~-~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las 750 (790)
..+ .+......++| .+|+++++....+.|...+++...... ......+.. . ... +.++++.| ||.++++
T Consensus 262 ~~~---~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~--~~r--p~~v~~~p-dG~lyv~ 331 (352)
T 2ism_A 262 YFW---PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-G--FGR--LREVQVGP-DGALYVT 331 (352)
T ss_dssp EEC---TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-S--SCC--EEEEEECT-TSCEEEE
T ss_pred Eec---CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-c--CCC--eeEEEECC-CCcEEEE
Confidence 122 11335667777 567766666666778877776432100 000000000 1 112 45899999 7877666
Q ss_pred Ee
Q 003871 751 GL 752 (790)
Q Consensus 751 ~s 752 (790)
..
T Consensus 332 ~~ 333 (352)
T 2ism_A 332 TS 333 (352)
T ss_dssp EC
T ss_pred Ee
Confidence 53
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.05 E-value=0.41 Score=50.25 Aligned_cols=226 Identities=13% Similarity=0.129 Sum_probs=141.9
Q ss_pred cEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCC-ceEEEEcCCC----CCEEE
Q 003871 517 SHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQ----NRITC 591 (790)
Q Consensus 517 ~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~----~~v~~ 591 (790)
+.+|.-...++.++|+++...++.+.-.. +|..=.|-.+..|+..+ +..|+-|++... .+.+.+..|. ..|..
T Consensus 78 ~iiALrag~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIIn 155 (494)
T 1bpo_A 78 KVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIIN 155 (494)
T ss_dssp SCEEEEETTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEE
T ss_pred cEEEEecCCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEE
Confidence 34444457899999999999888887444 45555665555443333 468999999743 5666776553 45777
Q ss_pred EEEeCCCCEEEEEeC-------CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC---CCEEEEE----eC
Q 003871 592 LAYSLSLNVLVSSGA-------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QIHLLSI----HE 657 (790)
Q Consensus 592 l~~spdg~~l~s~s~-------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~---~~~l~~~----~d 657 (790)
-..+++.++++..+- .|.+.+|..+.+. -+ ..+||. +....+.+..+ ...++.+ ..
T Consensus 156 Y~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ-~ieGha---a~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 156 YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQ-PIEGHA---ASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp EEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EE-EECCSE---EEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred EEECCCCCeEEEEeecccCCcccceEEEeeccccc------cc-hheeee---eeeEEEecCCCCCCceEEEEEEecCCC
Confidence 778899999775442 3678888887632 12 344654 22222222211 1223333 23
Q ss_pred CcEEEEECCCC---c------eeeeec-CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCC
Q 003871 658 GQIDVYEAPTL---N------HTSQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG 727 (790)
Q Consensus 658 g~I~iwd~~~~---~------~~~~~~-~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~g 727 (790)
+.++|.++... . .+..+. +........++..|+.-..++.-+.-|.|++||+.+|.++..-...
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs------ 299 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS------ 299 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC------
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc------
Confidence 68999998542 1 111122 2222556788999998889999999999999999999988775432
Q ss_pred CcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 003871 728 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 765 (790)
Q Consensus 728 h~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~ 765 (790)
...|. ..+.+. ...=++.....|.|.--.+.+.
T Consensus 300 --~~~iF--~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 300 --GETIF--VTAPHE-ATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp --SSCEE--EEEEET-TTTEEEEEETTCEEEEEEECTT
T ss_pred --CCceE--EecccC-CCCcEEEEccCceEEEEEEccc
Confidence 44555 444555 3344555568887777666554
No 308
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.03 E-value=0.16 Score=51.77 Aligned_cols=186 Identities=9% Similarity=0.020 Sum_probs=96.9
Q ss_pred CcEEEEec-C----CeEEEEECCCCcEEEEEcCCCCCe-EEEEEcCCC-eEEEEeCC------CcEEEEeCCCCceEEE-
Q 003871 516 GSHLFSAS-G----GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDD------SSILVHCPCTKKTKAK- 581 (790)
Q Consensus 516 ~~~l~s~s-d----g~I~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~g-~l~sgs~d------g~I~iwd~~~~~~~~~- 581 (790)
+.+++.|+ + ..+.+||..+.+....-..+.... .+++. -++ .++.|+.+ ..+.+||..+.+-...
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 66666666 3 578999998875443322122211 12222 256 66666654 3689999987753322
Q ss_pred -EcCCCCCEEEEEEeCCCCEEEEEeC---------CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCE
Q 003871 582 -LKGHQNRITCLAYSLSLNVLVSSGA---------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 651 (790)
Q Consensus 582 -l~~h~~~v~~l~~spdg~~l~s~s~---------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~ 651 (790)
+.........+. -+++.++.|+. -..+.+||+.+.+- ..+..++.... ....+.+ +++.
T Consensus 135 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~r~----~~~~~~~--~~~i 203 (306)
T 3ii7_A 135 SMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW---TELCPMIEARK----NHGLVFV--KDKI 203 (306)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEE---EEECCCSSCCB----SCEEEEE--TTEE
T ss_pred CCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeE---EECCCccchhh----cceEEEE--CCEE
Confidence 111111111222 25667777654 34588999988542 22222222211 1222222 5555
Q ss_pred EEEE-eC-----CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEE
Q 003871 652 LLSI-HE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELR 715 (790)
Q Consensus 652 l~~~-~d-----g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d-----g~i~vwd~~~~~~~ 715 (790)
++.| .+ ..+.+||+.+.+-...-...........+. -+++.++.|+.+ ..+.+||..+.+-.
T Consensus 204 ~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 204 FAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred EEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 5553 22 468999998765322211111111222222 267788888854 56899999887543
No 309
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.03 E-value=0.11 Score=52.92 Aligned_cols=228 Identities=10% Similarity=0.019 Sum_probs=116.9
Q ss_pred EEEEec---CCeEEEEECCCCcEEEEEcCCCCCe-EEEEEcCCC-eEEEEeCC----CcEEEEeCCCCceEEE--EcCCC
Q 003871 518 HLFSAS---GGKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAK--LKGHQ 586 (790)
Q Consensus 518 ~l~s~s---dg~I~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~g-~l~sgs~d----g~I~iwd~~~~~~~~~--l~~h~ 586 (790)
+++.|+ ...+.+||..+++-...-....... .+++. -++ .++.|+.+ ..+.+||..+++-... +....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 92 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR 92 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc
Confidence 444555 3678999998865432211111111 12222 356 66666654 5788999988754322 11111
Q ss_pred CCEEEEEEeCCCCEEEEEeCC------CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-e---
Q 003871 587 NRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H--- 656 (790)
Q Consensus 587 ~~v~~l~~spdg~~l~s~s~d------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~--- 656 (790)
.....+. -+++.++.|+.+ ..+.+||..+.+-. .+..++.... ....+.+ +++.++.| .
T Consensus 93 ~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~r~----~~~~~~~--~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 93 DSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWH---TKPSMLTQRC----SHGMVEA--NGLIYVCGGSLGN 161 (306)
T ss_dssp BSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEE---EECCCSSCCB----SCEEEEE--TTEEEEECCEESC
T ss_pred cceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceE---eCCCCcCCcc----eeEEEEE--CCEEEEECCCCCC
Confidence 1112222 266777777765 46899999885421 2222222221 1222222 55555553 2
Q ss_pred ------CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEeccccccC
Q 003871 657 ------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQ 725 (790)
Q Consensus 657 ------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d-----g~i~vwd~~~~~~~~~~~~~~~~~ 725 (790)
-..+.+||+.+.+-... .... .......+..-+++.++.|+.+ ..+.+||..+.+-...-. .+
T Consensus 162 ~~~~~~~~~~~~yd~~~~~W~~~-~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p 235 (306)
T 3ii7_A 162 NVSGRVLNSCEVYDPATETWTEL-CPMI-EARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP----MP 235 (306)
T ss_dssp TTTCEECCCEEEEETTTTEEEEE-CCCS-SCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCC----CS
T ss_pred CCcccccceEEEeCCCCCeEEEC-CCcc-chhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC----CC
Confidence 34589999987653322 1111 1111112222367777777754 468999998876433211 11
Q ss_pred CCCcccccceEEEEEecCCCCEEEEEeCC-----CcEEEEecCCCccccccC
Q 003871 726 PGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKL 772 (790)
Q Consensus 726 ~gh~~~~v~~~~v~~sp~d~~~las~s~D-----g~i~iW~~~~~~~~w~~~ 772 (790)
... ....++.+ ++.+++.||.+ ..+.+||+.+. .|...
T Consensus 236 ~~r----~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~~ 278 (306)
T 3ii7_A 236 WKG----VTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETD--KWVAN 278 (306)
T ss_dssp CCB----SCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTT--EEEEE
T ss_pred CCc----cceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCC--eEEeC
Confidence 111 11112222 56788888854 46788888775 47653
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.00 E-value=0.11 Score=52.86 Aligned_cols=222 Identities=11% Similarity=0.035 Sum_probs=113.7
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCe-EEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCc---eEEE--EcCCCCCEEEE
Q 003871 525 GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDD-----SSILVHCPCTKK---TKAK--LKGHQNRITCL 592 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~g-~l~sgs~d-----g~I~iwd~~~~~---~~~~--l~~h~~~v~~l 592 (790)
..+.+||..+.+....-....... .+++ ..++ .++.|+.+ ..+.+||..+++ -... +.........+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~ 109 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence 468899998765432211111111 1222 2356 66666654 368999998776 3222 11111111222
Q ss_pred EEeCCCCEEEEEeCC-----CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eC-----CcEE
Q 003871 593 AYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-----GQID 661 (790)
Q Consensus 593 ~~spdg~~l~s~s~d-----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d-----g~I~ 661 (790)
.+ +++.++.|+.+ ..+.+||+.+.+-. .+..++.... ....+.+ +++.++.| .+ ..+.
T Consensus 110 ~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~r~----~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 178 (301)
T 2vpj_A 110 TL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWS---MLGDMQTARE----GAGLVVA--SGVIYCLGGYDGLNILNSVE 178 (301)
T ss_dssp EE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE---EEEECSSCCB----SCEEEEE--TTEEEEECCBCSSCBCCCEE
T ss_pred EE--CCEEEEEcccCCCcccceEEEEcCCCCeEE---ECCCCCCCcc----cceEEEE--CCEEEEECCCCCCcccceEE
Confidence 22 56777777654 35889998875422 2222332221 1222222 56555554 32 4599
Q ss_pred EEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEeccccccCCCCcccccceE
Q 003871 662 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 736 (790)
Q Consensus 662 iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d-----g~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 736 (790)
+||+.+.+-... .... .......+...+++.++.|+.+ ..+.+||+.+.+-...-. .+... ...
T Consensus 179 ~~d~~~~~W~~~-~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~p~~r----~~~- 247 (301)
T 2vpj_A 179 KYDPHTGHWTNV-TPMA-TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS----MTTPR----CYV- 247 (301)
T ss_dssp EEETTTTEEEEE-CCCS-SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC----CSSCC----BSC-
T ss_pred EEeCCCCcEEeC-CCCC-cccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC----CCCcc----cce-
Confidence 999987654322 1111 1111112222367777788764 568999999886544321 11111 111
Q ss_pred EEEEecCCCCEEEEEeCC-----CcEEEEecCCCccccccCC
Q 003871 737 VIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKLP 773 (790)
Q Consensus 737 ~v~~sp~d~~~las~s~D-----g~i~iW~~~~~~~~w~~~~ 773 (790)
+++.. ++.+++.||.+ ..+.+||+.+. .|...+
T Consensus 248 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~ 285 (301)
T 2vpj_A 248 GATVL--RGRLYAIAGYDGNSLLSSIECYDPIID--SWEVVT 285 (301)
T ss_dssp EEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT--EEEEEE
T ss_pred eEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC--eEEEcC
Confidence 22222 56777887765 35778888765 476543
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.96 E-value=0.25 Score=51.31 Aligned_cols=198 Identities=14% Similarity=0.086 Sum_probs=112.8
Q ss_pred CCeEEEEEcCCCeEEEEe-------------CCCcEEEEeCCCC--ceE-EEEcC-----CCCCEEEEEEeC--CCC-EE
Q 003871 546 PIATYFILLPQDLFAFGF-------------DDSSILVHCPCTK--KTK-AKLKG-----HQNRITCLAYSL--SLN-VL 601 (790)
Q Consensus 546 ~~v~~l~~s~~g~l~sgs-------------~dg~I~iwd~~~~--~~~-~~l~~-----h~~~v~~l~~sp--dg~-~l 601 (790)
...-.+++.|+|.+++++ .+|.|.++|..+. +.. -.+.+ .......+.+.+ ++. +|
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 344567788888333333 6899999998742 221 12232 234677888766 454 34
Q ss_pred EEEeC---CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEe----C--------------CcE
Q 003871 602 VSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH----E--------------GQI 660 (790)
Q Consensus 602 ~s~s~---dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~----d--------------g~I 660 (790)
..+.. +.+|.+|++..+... ...+.++....- ...+.+++.++|++.++.. | |.|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~~g~~~---~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v 205 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKLL---PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV 205 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTE-EEEEEEECCTTC---SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCE-EEEEeccccCCC---CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEE
Confidence 44432 467888877653211 122332322111 4688999999998777642 1 345
Q ss_pred EEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCC-CeEEE--EeccccccCCCCcccccceE
Q 003871 661 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTST-LELRC--QINLTAYAQPGTISLELYPL 736 (790)
Q Consensus 661 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~dg~i~vwd~~~-~~~~~--~~~~~~~~~~gh~~~~v~~~ 736 (790)
+-+|. ++. ..+.. .-...+.++||||++.|+.+. ..+.|+.|++.. |++.. .+.. .| . +-
T Consensus 206 yr~d~--~~~-~~~~~--~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~-----~g----~--PD 269 (355)
T 3sre_A 206 TYYSP--NDV-RVVAE--GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-----DT----L--VD 269 (355)
T ss_dssp EEECT--TCC-EEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-----SS----E--EE
T ss_pred EEEEC--CeE-EEeec--CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC-----CC----C--Cc
Confidence 55655 332 22211 135678999999999887665 568999999863 44322 2211 12 1 33
Q ss_pred EEEEecCCCCEEEEEeCC-CcEEEEecC
Q 003871 737 VIAAHPLEPNRIALGLTN-GRVHVIEPL 763 (790)
Q Consensus 737 ~v~~sp~d~~~las~s~D-g~i~iW~~~ 763 (790)
.++..+.+|++.+++..+ +.|..|++.
T Consensus 270 Gi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 270 NISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred eEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 677777227877766544 244444443
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.95 E-value=0.51 Score=49.57 Aligned_cols=238 Identities=10% Similarity=0.057 Sum_probs=148.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEecC
Q 003871 446 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASG 524 (790)
Q Consensus 446 ~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~sd 524 (790)
+.-.+|..+.+|.-. ..++.|+|+++... +.... ....|.--.|- .+.|+..++
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~k--------------------lks~~----~~e~VvfWkWis~~~l~lVT~ 124 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSK--------------------MKAHT----MTDDVTFWKWISLNTVALVTD 124 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEE--------------------EEEEE----CSSCCCEEEEEETTEEEEECS
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhh--------------------hccee----cCCCceEEEecCCCeEEEEcC
Confidence 345688887555554 78899999876433 22222 34566666777 889999999
Q ss_pred CeEEEEECCC-CcEEEEEcCC----CCCeEEEEEcCCC--eEEEEe------CCCcEEEEeCCCCceEEEEcCCCCCEEE
Q 003871 525 GKISIFSLET-FQTLATFANP----PPIATYFILLPQD--LFAFGF------DDSSILVHCPCTKKTKAKLKGHQNRITC 591 (790)
Q Consensus 525 g~I~vwd~~~-~~~~~~~~~~----~~~v~~l~~s~~g--~l~sgs------~dg~I~iwd~~~~~~~~~l~~h~~~v~~ 591 (790)
..|.-|+++. ..+.+.+..| ...|..-..+++. .+++|- -.|.+.+|..+. +..+.+.||......
T Consensus 125 taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~ 203 (494)
T 1bpo_A 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQ 203 (494)
T ss_dssp SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEE
T ss_pred CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEE
Confidence 9999999974 3566667654 3456777778888 444442 235788999874 455678888665444
Q ss_pred EEEeCC---CCEEEEEeCC---CcEEEEECCCC---c-eeeceeeee-eccCCCCCCCCeEEEEEeCCCCEEEE-EeCCc
Q 003871 592 LAYSLS---LNVLVSSGAD---AQLCVWDAVGW---K-KLCSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 659 (790)
Q Consensus 592 l~~spd---g~~l~s~s~d---g~I~vwd~~~~---~-~~~~~~l~~-~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~ 659 (790)
+...-+ .+.++.+... +.+++-++... . ....+.+.- ++.... .+-..++..++.-..++. ..-|.
T Consensus 204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~--~DFPvamqvs~kygviyviTK~G~ 281 (494)
T 1bpo_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ--NDFPVAMQISEKHDVVFLITKYGY 281 (494)
T ss_dssp EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTST--TCCEEEEEEETTTTEEEEEETTSE
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccc--cCceeEEEecccCCEEEEEecCce
Confidence 433211 1244444443 78999998542 1 011111110 111111 145667888887777776 68899
Q ss_pred EEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003871 660 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 713 (790)
Q Consensus 660 I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~ 713 (790)
|++||++++.++..-... ...|...+-+....-+++....|.|.--.++...
T Consensus 282 i~lyDleTgt~i~~nrIs--~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 282 IHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEEETTTCCEEEEEECC--SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred EEEEecccceeeeeeccc--CCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 999999999988665442 4556555555555555555677777666665544
No 313
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.91 E-value=0.24 Score=50.20 Aligned_cols=222 Identities=12% Similarity=0.073 Sum_probs=113.4
Q ss_pred CeEEEEECCCCcEEEEEcCCCCCe-EEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEE--EcCCCCCEEEEEEe
Q 003871 525 GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK--LKGHQNRITCLAYS 595 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~g-~l~sgs~d-----g~I~iwd~~~~~~~~~--l~~h~~~v~~l~~s 595 (790)
..+..||+.+.+....-..+.... .+++. -++ .++.|+.+ ..+.+||..+.+-... +.........+.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-- 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-- 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--
Confidence 468899988765433211111111 12222 256 66666644 3688999887653221 111111112222
Q ss_pred CCCCEEEEEeCCC-----cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-e-------CCcEEE
Q 003871 596 LSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H-------EGQIDV 662 (790)
Q Consensus 596 pdg~~l~s~s~dg-----~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~-------dg~I~i 662 (790)
-+++.++.|+.++ .+.+||+.+.+-. .+..++.... ....+.+ +++.++.| . -..+.+
T Consensus 107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~r~----~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 177 (302)
T 2xn4_A 107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF---HVAPMNTRRS----SVGVGVV--GGLLYAVGGYDVASRQCLSTVEC 177 (302)
T ss_dssp ETTEEEEEEEECSSCEEEEEEEEETTTTEEE---EECCCSSCCB----SCEEEEE--TTEEEEECCEETTTTEECCCEEE
T ss_pred ECCEEEEEcCCCCCccCceEEEEeCCCCeEe---ecCCCCCccc----CceEEEE--CCEEEEEeCCCCCCCccccEEEE
Confidence 2567777777653 5788998875422 2222222221 2222222 45555553 2 235899
Q ss_pred EECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEeccccccCCCCcccccceEE
Q 003871 663 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 737 (790)
Q Consensus 663 wd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d-----g~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 737 (790)
||+.+.+-...-......... ++ ...+++.++.|+.+ ..+.+||..+.+-...-. .+..... . +
T Consensus 178 yd~~~~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~~~~r~~---~--~ 246 (302)
T 2xn4_A 178 YNATTNEWTYIAEMSTRRSGA-GV-GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD----MNMCRRN---A--G 246 (302)
T ss_dssp EETTTTEEEEECCCSSCCBSC-EE-EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC----CSSCCBS---C--E
T ss_pred EeCCCCcEEECCCCccccccc-cE-EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC----CCCcccc---C--e
Confidence 999876543221111111111 22 22367778888765 469999999876543321 1111101 1 2
Q ss_pred EEEecCCCCEEEEEeCCC-----cEEEEecCCCccccccCC
Q 003871 738 IAAHPLEPNRIALGLTNG-----RVHVIEPLESEVEWGKLP 773 (790)
Q Consensus 738 v~~sp~d~~~las~s~Dg-----~i~iW~~~~~~~~w~~~~ 773 (790)
++.. ++.+++.||.++ .+.+||+.+. .|...+
T Consensus 247 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~ 283 (302)
T 2xn4_A 247 VCAV--NGLLYVVGGDDGSCNLASVEYYNPTTD--KWTVVS 283 (302)
T ss_dssp EEEE--TTEEEEECCBCSSSBCCCEEEEETTTT--EEEECS
T ss_pred EEEE--CCEEEEECCcCCCcccccEEEEcCCCC--eEEECC
Confidence 2222 567888887654 4888998876 487654
No 314
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.87 E-value=1.1 Score=52.20 Aligned_cols=286 Identities=15% Similarity=0.101 Sum_probs=155.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEE
Q 003871 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLF 520 (790)
Q Consensus 442 ~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~ 520 (790)
..|.++...+++..|..|+. +-+..++..+... ..... -....|.++... ...|.
T Consensus 191 ~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~---------------------~~~~~--l~~~~i~~i~~d~~g~lW 246 (758)
T 3ott_A 191 LFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI---------------------KQTEA--FHNNSIKSLALDGNGDLL 246 (758)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE---------------------EEEEE--EEEEEEEEEEECTTCCEE
T ss_pred ceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE---------------------EeccC--CCCCeEEEEEEcCCCCEE
Confidence 35888888887775555654 4466676544221 11000 012347777776 44555
Q ss_pred EecCCeEEEEECCCCcEEEEEcC-------CCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEc-------CCC
Q 003871 521 SASGGKISIFSLETFQTLATFAN-------PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK-------GHQ 586 (790)
Q Consensus 521 s~sdg~I~vwd~~~~~~~~~~~~-------~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~-------~h~ 586 (790)
.|+++-+.+++..+++....... ....|.++....+|.|..|+..| +.++... .. ...+. ...
T Consensus 247 igT~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~ 323 (758)
T 3ott_A 247 AGTDNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDG 323 (758)
T ss_dssp EEETTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCC
T ss_pred EEeCCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCC
Confidence 55556688888876554322111 12358888887777556666666 5544332 21 11111 123
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccC-CCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEEC
Q 003871 587 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 665 (790)
Q Consensus 587 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~-~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~ 665 (790)
..|.++.-..+|++.+ |+.+| +..++..++......... .... ..-....|.++.-.++|.+-+.. ++.+..||.
T Consensus 324 ~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~ 399 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYR-MGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDY 399 (758)
T ss_dssp CBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEEC-TTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEET
T ss_pred ceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEec-cCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCc
Confidence 4688888888887654 45554 666666543211111111 0000 00001468899888888755544 668999999
Q ss_pred CCCceeeeecCCC----CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC------CeEE--EEeccccccCCCCccccc
Q 003871 666 PTLNHTSQLVPDK----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTST------LELR--CQINLTAYAQPGTISLEL 733 (790)
Q Consensus 666 ~~~~~~~~~~~~~----h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~------~~~~--~~~~~~~~~~~gh~~~~v 733 (790)
.+++...-..... ....|.++...++|+ |..|+..+-|.++|..+ +... ..+... .|-....|
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~i 474 (758)
T 3ott_A 400 ATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVH----NGLSGMFI 474 (758)
T ss_dssp TTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGG----GTCSCSCE
T ss_pred CCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccc----ccccccee
Confidence 8765432211110 134588888777776 44566666788888653 1111 111111 12112335
Q ss_pred ceEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 003871 734 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 734 ~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~ 766 (790)
+ ++...+ +|.+.+.++..+.|..+++.+++
T Consensus 475 ~--~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~ 504 (758)
T 3ott_A 475 N--QIIPDN-EGNVWVLLYNNKGIDKINPRTRE 504 (758)
T ss_dssp E--EEEECT-TSCEEEEETTCSSEEEEETTTTE
T ss_pred e--eEEEcC-CCCEEEEccCCCCcEEEeCCCCc
Confidence 5 777777 67776644445668888887654
No 315
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.82 E-value=0.31 Score=50.88 Aligned_cols=237 Identities=10% Similarity=0.048 Sum_probs=124.3
Q ss_pred CCeEEEEec--Cc-EEEEecCCeEEEEECCCCcEEEEEc-------CCCCCeEEEEEcCC----CeEEEE-eC-------
Q 003871 507 DSISCFALR--GS-HLFSASGGKISIFSLETFQTLATFA-------NPPPIATYFILLPQ----DLFAFG-FD------- 564 (790)
Q Consensus 507 ~~V~~l~~s--~~-~l~s~sdg~I~vwd~~~~~~~~~~~-------~~~~~v~~l~~s~~----g~l~sg-s~------- 564 (790)
.....++|. |+ ++++-..|.|++++.. ++....+. ........++++|+ +.|+++ +.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 346788998 66 5555458999999854 33221111 12345689999995 433333 22
Q ss_pred CCcEEEEeCCCC--c--eEEE-EcCC------CCCEEEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCce
Q 003871 565 DSSILVHCPCTK--K--TKAK-LKGH------QNRITCLAYSLSLNVLVSSGAD-------------AQLCVWDAVGWKK 620 (790)
Q Consensus 565 dg~I~iwd~~~~--~--~~~~-l~~h------~~~v~~l~~spdg~~l~s~s~d-------------g~I~vwd~~~~~~ 620 (790)
...|..++...+ . .... +... ......++|.|||.+.++.+.. +.|.-+|.... .
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~-~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE-I 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC-C
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC-C
Confidence 235666766533 1 1111 1110 1123579999999666654432 45666676541 0
Q ss_pred eece--------eeeeeccCCCCCCCCeEEEEEeC-CCCEEEEE--eCCcEEEEECCCCce-------------------
Q 003871 621 LCSK--------FLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI--HEGQIDVYEAPTLNH------------------- 670 (790)
Q Consensus 621 ~~~~--------~l~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~--~dg~I~iwd~~~~~~------------------- 670 (790)
.... ....+..++. ....++|+| +|++.++- .++.=.|.-+..+.-
T Consensus 176 p~~npf~~~~~~~~~i~a~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCCCcCCCCCCccEEEEcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 0000 0111223443 578899999 56555552 222222222221111
Q ss_pred ------------eeeecCCCCCCCeEEEEEec-------CCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCccc
Q 003871 671 ------------TSQLVPDKMDLPITYATYSC-------DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 731 (790)
Q Consensus 671 ------------~~~~~~~~h~~~v~~l~~s~-------dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~ 731 (790)
+..+. +...+..++|.. +|+++++.-..+.|...++..++....... .. +. ..
T Consensus 252 ~~~~~~~~~~~P~~~~~---~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~---~~-~~-~~ 323 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYWK---DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI---LT-DR-GQ 323 (353)
T ss_dssp CCBSSCTTSCCCSEEES---SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE---SG-GG-CC
T ss_pred ccCCCCCCccCCeEEeC---CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc---cc-CC-CC
Confidence 01111 134567788864 577777777778888888887654433111 00 10 11
Q ss_pred ccceEEEEEecCCCCEEEEEe-CCCcEEEEec
Q 003871 732 ELYPLVIAAHPLEPNRIALGL-TNGRVHVIEP 762 (790)
Q Consensus 732 ~v~~~~v~~sp~d~~~las~s-~Dg~i~iW~~ 762 (790)
.+..+++.| ||.+.++.. .+| +||.+
T Consensus 324 --rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 324 --RIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp --CEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred --ceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 255999999 888666543 344 45554
No 316
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.002 Score=66.52 Aligned_cols=201 Identities=6% Similarity=-0.030 Sum_probs=108.8
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEEEcCC-CCCEEEEEE--eC-CCCEEEEE-eCCCcEEEEECCCCceeeceeeeeeccC
Q 003871 558 LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAY--SL-SLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTG 632 (790)
Q Consensus 558 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h-~~~v~~l~~--sp-dg~~l~s~-s~dg~I~vwd~~~~~~~~~~~l~~~~~~ 632 (790)
.+++++.||.|+-+|..+|+....++.. ..++....- .+ ++..++.. +.||.+..+|..+|.......+..+..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~- 90 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS- 90 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT-
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee-
Confidence 7889999999999999999998888653 122222110 01 22333333 589999999998875432222211110
Q ss_pred CCCCCCCeEE---EEE------eCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCC-----eEEEE---Ee--cCCC
Q 003871 633 LVPETTIVNH---IQF------HPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLP-----ITYAT---YS--CDGK 693 (790)
Q Consensus 633 ~~~~~~~v~~---i~~------sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~-----v~~l~---~s--~dg~ 693 (790)
. .++.. ... +.++..++.+.+|.++-.|+.+|+.+.++........ ..+.. +. ..+.
T Consensus 91 ~----SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 91 T----SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp T----CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred c----cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 0 12221 001 1344333346999999999999999988864321111 01111 10 1245
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEEEecCCCcccc
Q 003871 694 CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 769 (790)
Q Consensus 694 ~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w 769 (790)
.|+.|..+..+.+.+ ++|+ +..+....+.+... ...+. .....+. |+.+ +.++.||.|.-.|..+|+..|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~-~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL-DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT-THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEeccccccccc-ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677788777777777 4554 22221111111000 00000 0000112 4555 447889999999999999999
No 317
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.78 E-value=0.24 Score=50.24 Aligned_cols=184 Identities=9% Similarity=-0.008 Sum_probs=96.2
Q ss_pred CcEEEEec-C-----CeEEEEECCCCc---EEEEEcCCC--CCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCce
Q 003871 516 GSHLFSAS-G-----GKISIFSLETFQ---TLATFANPP--PIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKT 578 (790)
Q Consensus 516 ~~~l~s~s-d-----g~I~vwd~~~~~---~~~~~~~~~--~~v~~l~~s~~g-~l~sgs~d-----g~I~iwd~~~~~~ 578 (790)
+.+++.|+ + ..+.+||..+.+ ....-..+. .....+. .++ .++.|+.+ ..+.+||..+++-
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 66666666 3 468999998765 332211111 1122222 256 66666543 3688999887653
Q ss_pred EE--EEcCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCE
Q 003871 579 KA--KLKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 651 (790)
Q Consensus 579 ~~--~l~~h~~~v~~l~~spdg~~l~s~s~d-----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~ 651 (790)
.. .+.........+. .+++.++.|+.+ ..+.+||+.+.+-. .+..++.... ....+.+ +++.
T Consensus 141 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~r~----~~~~~~~--~~~i 209 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWT---NVTPMATKRS----GAGVALL--NDHI 209 (301)
T ss_dssp EEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEE---EECCCSSCCB----SCEEEEE--TTEE
T ss_pred EECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEE---eCCCCCcccc----cceEEEE--CCEE
Confidence 32 2221111112222 267777777754 45889999875422 2222222211 2222222 4555
Q ss_pred EEEE-e-----CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCCeE
Q 003871 652 LLSI-H-----EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLEL 714 (790)
Q Consensus 652 l~~~-~-----dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d-----g~i~vwd~~~~~~ 714 (790)
++.| . ...+.+||+.+.+-...-... .......+...+++.++.|+.+ ..+.+||..+.+-
T Consensus 210 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 210 YVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT--TPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEEECCCS--SCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred EEEeCCCCCcccceEEEEeCCCCcEEECCCCC--CcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 5554 3 246999999876543221111 1111122223367777888765 4688899887654
No 318
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.73 E-value=0.35 Score=50.22 Aligned_cols=161 Identities=14% Similarity=0.201 Sum_probs=90.3
Q ss_pred CCeEEEEECCCC-c---EEEEEcCC-CCCeEEEEEcCCC-eEEEEe-----------------CCCcEEEEeCCCCceEE
Q 003871 524 GGKISIFSLETF-Q---TLATFANP-PPIATYFILLPQD-LFAFGF-----------------DDSSILVHCPCTKKTKA 580 (790)
Q Consensus 524 dg~I~vwd~~~~-~---~~~~~~~~-~~~v~~l~~s~~g-~l~sgs-----------------~dg~I~iwd~~~~~~~~ 580 (790)
+.+|.+|+++.+ . .+..+.+. -...+.+++.++| +.++.. ..|.|+.+|. ++..
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~- 214 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR- 214 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE-
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE-
Confidence 467888877653 2 23334332 2357899999999 666543 1245666665 3322
Q ss_pred EEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCC-CceeeceeeeeeccCCCCCCCCeEEEEEeC-CCCEEEEEe-
Q 003871 581 KLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSIH- 656 (790)
Q Consensus 581 ~l~~h~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~~-~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~- 656 (790)
.+...-...+.++|+||++.++.+. ..+.|..||+.. ++....+.+. + . +....+++.+ +|.+.+++.
T Consensus 215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~----~---g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-F----D---TLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-C----S---SEEEEEEECTTTCCEEEEEES
T ss_pred EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-C----C---CCCceEEEeCCCCcEEEEecC
Confidence 2222234578999999998877665 468899999864 3322222221 1 1 4677899999 588777642
Q ss_pred C-CcEEEEECC--CCceeeeecCCCCCCCeEEEEEecCCCEE
Q 003871 657 E-GQIDVYEAP--TLNHTSQLVPDKMDLPITYATYSCDGKCI 695 (790)
Q Consensus 657 d-g~I~iwd~~--~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 695 (790)
+ +.|..||.. .+..+..+.............|..||+.+
T Consensus 287 ~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v~~ddG~~l 328 (355)
T 3sre_A 287 NGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAENGTVL 328 (355)
T ss_dssp CHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEEEEECSSSC
T ss_pred CceEEEEECCCCCCCCEEEEEEccCCCCcEEEEEEEcCCCEE
Confidence 3 345555554 24444444321111222223355566643
No 319
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.55 E-value=0.14 Score=53.85 Aligned_cols=152 Identities=15% Similarity=0.120 Sum_probs=94.2
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCceEEEEcCC----CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeec-----
Q 003871 554 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH----QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS----- 623 (790)
Q Consensus 554 s~~g-~l~sgs~dg~I~iwd~~~~~~~~~l~~h----~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~----- 623 (790)
..+| .++.+- ++.||.-++..+...+.++.. -..|..+..+|+|++||..+ +..|.|-.+..+.....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 4455 444443 467888887754444444432 12578899999999999886 56899988873221110
Q ss_pred e--eeeeeccCCC--CCCCCeEEEEEeCCC---CEEEE-EeCCcEEEEECCCCc--ee------eeecCCCCCCCeEEEE
Q 003871 624 K--FLHSFQTGLV--PETTIVNHIQFHPDQ---IHLLS-IHEGQIDVYEAPTLN--HT------SQLVPDKMDLPITYAT 687 (790)
Q Consensus 624 ~--~l~~~~~~~~--~~~~~v~~i~~sp~~---~~l~~-~~dg~I~iwd~~~~~--~~------~~~~~~~h~~~v~~l~ 687 (790)
. ..+...-+.. ....+|..+.|+|-+ ..|++ -.|+.|++||+.... +. ..+........|.+++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 0 0111111100 012689999999954 45666 699999999998522 11 1121122246799999
Q ss_pred EecCCCEEEEEE--cCCeEEEE
Q 003871 688 YSCDGKCIYVSC--KSGHVKVF 707 (790)
Q Consensus 688 ~s~dg~~l~sgs--~dg~i~vw 707 (790)
|++++-.|+..+ ++|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999887777755 78888754
No 320
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.41 E-value=0.52 Score=49.09 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=61.7
Q ss_pred CCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCce--EEEEc---CCCCCEEEEEEeCC---CCEEEEEeC-C-----CcEE
Q 003871 546 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKT--KAKLK---GHQNRITCLAYSLS---LNVLVSSGA-D-----AQLC 611 (790)
Q Consensus 546 ~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~--~~~l~---~h~~~v~~l~~spd---g~~l~s~s~-d-----g~I~ 611 (790)
.....++|.|+|.++++..+|.|++++ +++. +..+. ........++++|+ +..|..+.. + +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 345799999999444445679999998 4432 22221 12356899999998 555554433 2 5788
Q ss_pred EEECCCCceeeceee-eeec--cCCCCCCCCeEEEEEeCCCCEEEE
Q 003871 612 VWDAVGWKKLCSKFL-HSFQ--TGLVPETTIVNHIQFHPDQIHLLS 654 (790)
Q Consensus 612 vwd~~~~~~~~~~~l-~~~~--~~~~~~~~~v~~i~~sp~~~~l~~ 654 (790)
.|+...+.......+ ..++ .+.. .....++|.|||.+.++
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~---h~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGL---HSGGRIAFGPDGMLYVT 151 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCC---CCCCCEEECTTSCEEEE
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCC---cCCceEEECCCCCEEEE
Confidence 888775422111222 2233 1111 13468999999976665
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.41 E-value=0.63 Score=47.05 Aligned_cols=186 Identities=11% Similarity=0.046 Sum_probs=95.5
Q ss_pred CcEEEEec-C-----CeEEEEECCCCcEEEEEcCCCCCe-EEEEEcCCC-eEEEEeCCC-----cEEEEeCCCCceEEE-
Q 003871 516 GSHLFSAS-G-----GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAK- 581 (790)
Q Consensus 516 ~~~l~s~s-d-----g~I~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~g-~l~sgs~dg-----~I~iwd~~~~~~~~~- 581 (790)
+..++.|+ + ..+.+||..+.+-...-..+.... .+++. -++ .++.|+.++ .+.+||+.+.+-...
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 66666666 3 368899998765433221111111 12222 256 666666443 578899887653322
Q ss_pred -EcCCCCCEEEEEEeCCCCEEEEEeCC-------CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEE
Q 003871 582 -LKGHQNRITCLAYSLSLNVLVSSGAD-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 653 (790)
Q Consensus 582 -l~~h~~~v~~l~~spdg~~l~s~s~d-------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~ 653 (790)
+.........+. -+++.++.|+.+ ..+.+||+.+.+-. .+..++.... ....+.+ +++.++
T Consensus 141 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~----~~~~~~~--~~~iyv 209 (302)
T 2xn4_A 141 PMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT---YIAEMSTRRS----GAGVGVL--NNLLYA 209 (302)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEE---EECCCSSCCB----SCEEEEE--TTEEEE
T ss_pred CCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE---ECCCCccccc----cccEEEE--CCEEEE
Confidence 111111112222 256677776643 35889999875422 2222222221 2222222 455555
Q ss_pred EE-eC-----CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEE
Q 003871 654 SI-HE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLELR 715 (790)
Q Consensus 654 ~~-~d-----g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg-----~i~vwd~~~~~~~ 715 (790)
.| .+ ..+.+||+.+.+-... .... .......+...+++.++.|+.++ .+.+||..+.+-.
T Consensus 210 ~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~~-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 210 VGGHDGPLVRKSVEVYDPTTNAWRQV-ADMN-MCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp ECCBSSSSBCCCEEEEETTTTEEEEE-CCCS-SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred ECCCCCCcccceEEEEeCCCCCEeeC-CCCC-CccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 54 33 4699999987654322 1111 11111112234677888887653 4899999887643
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.39 E-value=0.64 Score=47.38 Aligned_cols=222 Identities=9% Similarity=0.072 Sum_probs=112.3
Q ss_pred CeEEEEECCCCcEEE-EEcCCCCCeEEEEEcCCC-eEEEEeC-----C------CcEEEEeCCCCceEEEEcCCCCCE--
Q 003871 525 GKISIFSLETFQTLA-TFANPPPIATYFILLPQD-LFAFGFD-----D------SSILVHCPCTKKTKAKLKGHQNRI-- 589 (790)
Q Consensus 525 g~I~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~g-~l~sgs~-----d------g~I~iwd~~~~~~~~~l~~h~~~v-- 589 (790)
..+..||..+++-.. .+..+.......+...++ .++.|+. . ..+..||..+++-. .+..-..+-
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~ 91 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMPPLPSPRCL 91 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECCCBSSCEES
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECCCCCcchhc
Confidence 678999999877543 111122233333344566 6666663 1 12788998876532 222111111
Q ss_pred EEEEEeCCCCEEEEEeCC--------CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-e-C--
Q 003871 590 TCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H-E-- 657 (790)
Q Consensus 590 ~~l~~spdg~~l~s~s~d--------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~-d-- 657 (790)
.+++. -+++.++.|+.+ ..+.+||..+.+- ..+..++.... ... ++. -+++.++.| . +
T Consensus 92 ~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~r~----~~~-~~~-~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 92 FGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKW---GESDPLPYVVY----GHT-VLS-HMDLVYVIGGKGSDR 161 (315)
T ss_dssp CEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEE---EECCCCSSCCB----SCE-EEE-ETTEEEEECCBCTTS
T ss_pred eeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcE---eECCCCCCccc----cee-EEE-ECCEEEEEeCCCCCC
Confidence 11222 256677777732 4589999987542 22222222221 112 222 345555554 3 2
Q ss_pred ---CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEEEEeccccccCCCCc
Q 003871 658 ---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLELRCQINLTAYAQPGTI 729 (790)
Q Consensus 658 ---g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg-----~i~vwd~~~~~~~~~~~~~~~~~~gh~ 729 (790)
..+.+||..+.+-... .... .......+..-+++.++.|+.++ .+.+||..+.+-...-. .+....
T Consensus 162 ~~~~~~~~yd~~~~~W~~~-~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~ 235 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKEL-APMQ-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQERS 235 (315)
T ss_dssp CBCCCEEEEETTTTEEEEC-CCCS-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSCCB
T ss_pred cccceEEEEeCCCCeEEEC-CCCC-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCccc
Confidence 3599999987643221 1111 11111122233678888887654 58899998876443321 111110
Q ss_pred ccccceEEEEEecCCCCEEEEEeCCC--------------cEEEEecCCCccccccC
Q 003871 730 SLELYPLVIAAHPLEPNRIALGLTNG--------------RVHVIEPLESEVEWGKL 772 (790)
Q Consensus 730 ~~~v~~~~v~~sp~d~~~las~s~Dg--------------~i~iW~~~~~~~~w~~~ 772 (790)
. . +++.. ++.+++.||.++ .+.+||+.+. .|...
T Consensus 236 ~---~--~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~ 283 (315)
T 4asc_A 236 S---L--SLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK--KWEGV 283 (315)
T ss_dssp S---C--EEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT--EEEEE
T ss_pred c---e--eEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCC--hhhhh
Confidence 1 1 22222 467778777642 3667777665 58765
No 323
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.37 E-value=0.15 Score=52.74 Aligned_cols=115 Identities=15% Similarity=-0.030 Sum_probs=67.7
Q ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC---CCEEEE--E
Q 003871 581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QIHLLS--I 655 (790)
Q Consensus 581 ~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~---~~~l~~--~ 655 (790)
.+...-.....++|.|||+++++--..|.|++++..+++.. .+..++.-..........|+++|+ +..|++ +
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~---~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT---ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe---eecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 33333456789999999997777655899999987655421 222121100001147889999996 445554 2
Q ss_pred --eCCcEEEEECCCC----------cee-eeecCCCCCCCeEEEEEecCCCEEEEEE
Q 003871 656 --HEGQIDVYEAPTL----------NHT-SQLVPDKMDLPITYATYSCDGKCIYVSC 699 (790)
Q Consensus 656 --~dg~I~iwd~~~~----------~~~-~~~~~~~h~~~v~~l~~s~dg~~l~sgs 699 (790)
.++.|.-|....+ +.+ ..+.. .....-..++|.|||.+.++.+
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECB
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEEC
Confidence 3456766766542 111 12221 1123456799999998777654
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.33 E-value=0.33 Score=49.47 Aligned_cols=231 Identities=11% Similarity=0.052 Sum_probs=116.3
Q ss_pred CcEEEEec-C----CeEEEEECCCCcEEEEEcCCCCCe-EEEEEcCCC-eEEEEeC----C-----CcEEEEeCCCCceE
Q 003871 516 GSHLFSAS-G----GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFD----D-----SSILVHCPCTKKTK 579 (790)
Q Consensus 516 ~~~l~s~s-d----g~I~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~g-~l~sgs~----d-----g~I~iwd~~~~~~~ 579 (790)
+.+++.|+ + ..+.+||..+.+....-..+.... .+++. .++ .++.|+. + ..+.+||..+.+-.
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 45555555 2 478999998765433211111111 12222 256 6666654 2 36889998876432
Q ss_pred EE--EcCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEE
Q 003871 580 AK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 652 (790)
Q Consensus 580 ~~--l~~h~~~v~~l~~spdg~~l~s~s~d-----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l 652 (790)
.. +.........+.+ +++.++.|+.+ ..+.+||..+.+-. .+..++.... ....+.+ +++.+
T Consensus 104 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~----~~~~~~~--~~~iy 172 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWH---LVAPMLTRRI----GVGVAVL--NRLLY 172 (308)
T ss_dssp ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEE---ECCCCSSCCB----SCEEEEE--TTEEE
T ss_pred ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEe---ECCCCCcccc----ceEEEEE--CCEEE
Confidence 21 1111111122222 66777777643 36889999875422 2222222221 2222222 45555
Q ss_pred EEE-eC-----CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEeccc
Q 003871 653 LSI-HE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLT 721 (790)
Q Consensus 653 ~~~-~d-----g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d-----g~i~vwd~~~~~~~~~~~~~ 721 (790)
+.| .+ ..+.+||+.+.+-...-...........+. -+++.++.|+.+ ..+.+||+.+.+-...-.
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-- 248 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP-- 248 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC--
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC--
Confidence 554 32 459999998765322111111111112222 367777788765 569999999876433211
Q ss_pred cccCCCCcccccceEEEEEecCCCCEEEEEeCC-----CcEEEEecCCCccccccCC
Q 003871 722 AYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKLP 773 (790)
Q Consensus 722 ~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D-----g~i~iW~~~~~~~~w~~~~ 773 (790)
.+..... . +++.. ++.+++.||.+ ..+.+||+.+. .|...+
T Consensus 249 --~p~~r~~---~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~ 294 (308)
T 1zgk_A 249 --MKHRRSA---L--GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD--TWSEVT 294 (308)
T ss_dssp --CSSCCBS---C--EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEE
T ss_pred --CCCCccc---e--EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC--EEeecC
Confidence 1111101 1 22222 56778888754 35778888765 486543
No 325
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.30 E-value=2.4 Score=49.16 Aligned_cols=277 Identities=13% Similarity=0.085 Sum_probs=155.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEE
Q 003871 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 519 (790)
Q Consensus 441 ~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l 519 (790)
...|.++.-..+|. |-.|+.+| +..||-..... +.. ........|.++... ...|
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~-------------~~~---------~~~~~~~~i~~i~~d~~g~l 76 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQ-------------HFT---------YGENNNTRIYCGVIIDNTYL 76 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEE-------------CSC---------TTSTTSSCEEEEEEETTTEE
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEE-------------EEc---------cCCCCCceEEEEEEcCCCcE
Confidence 46799999888886 55667776 55555221000 000 000134568887777 6677
Q ss_pred EEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEc-----CCCCCEEEEEE
Q 003871 520 FSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK-----GHQNRITCLAY 594 (790)
Q Consensus 520 ~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~-----~h~~~v~~l~~ 594 (790)
..|+++.+..||..+.+...........|.++.. .+|.+..|+.+ .+..+|..+++.. .+. .....|.++..
T Consensus 77 WigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~ 153 (758)
T 3ott_A 77 YMGTDNGILVYNYRADRYEQPETDFPTDVRTMAL-QGDTLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIR 153 (758)
T ss_dssp EEEETTEEEEEETTTTEECCCSCCCCSCEEEEEE-ETTEEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEE
T ss_pred EEEeCCCeEEEeCCCCEEECcccCCCceEEEEEe-cCCcEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEE
Confidence 7777656889998876433211112235776654 35556666666 6888998766543 331 12346888888
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeee
Q 003871 595 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQL 674 (790)
Q Consensus 595 spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~ 674 (790)
.++|.+.+ |+.+ -+..+|..+++... +. .+.........|.++...+++..|.++.++.+..+|..+++... +
T Consensus 154 d~~g~lWi-gt~~-Gl~~~~~~~~~~~~---~~-~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~-~ 226 (758)
T 3ott_A 154 TKDNQIYV-GTYN-GLCRYIPSNGKFEG---IP-LPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQ-T 226 (758)
T ss_dssp CTTCCEEE-EETT-EEEEEETTTTEEEE---EC-CCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEEEE-E
T ss_pred cCCCCEEE-EeCC-CHhhCccCCCceEE---ec-CCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeEEe-c
Confidence 88887655 4444 57788887644211 11 11110000135888888887765555544568899987665322 2
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC
Q 003871 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 754 (790)
Q Consensus 675 ~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D 754 (790)
... ....|.++....+|.+.+. +. +-+.+++..+++...... ....+.+-....|+ ++.... +|.+-+ |+..
T Consensus 227 ~~l-~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~~~~~~~-~~~~~~~l~~~~i~--~i~~D~-~g~lWi-GT~~ 298 (758)
T 3ott_A 227 EAF-HNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTPLQHIIH-DSRNIQSLTNNIIW--NIFADQ-EHNIWL-GTDY 298 (758)
T ss_dssp EEE-EEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSCCEEECC-CTTCTTSCSCSCEE--EEEECT-TCCEEE-EESS
T ss_pred cCC-CCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCcEEEEEc-CCCCcCcCCcCeEE--EEEEcC-CCCEEE-EeCC
Confidence 110 1345888888888876554 44 458889988775433211 11111111233455 676666 555444 4445
Q ss_pred CcEEEE
Q 003871 755 GRVHVI 760 (790)
Q Consensus 755 g~i~iW 760 (790)
| +.+.
T Consensus 299 G-l~~~ 303 (758)
T 3ott_A 299 G-ISLS 303 (758)
T ss_dssp S-EEEE
T ss_pred c-cccc
Confidence 5 4433
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.22 E-value=0.27 Score=51.63 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=96.1
Q ss_pred CcEEEEecCCeEEEEECCCCcEEEEEcCC----CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc------------e
Q 003871 516 GSHLFSASGGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK------------T 578 (790)
Q Consensus 516 ~~~l~s~sdg~I~vwd~~~~~~~~~~~~~----~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~------------~ 578 (790)
|..++.+.++.||.-++..+...+.+... ...|..+..+|+| ++|..+ +..|.|..+..+. .
T Consensus 32 ~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q 110 (452)
T 3pbp_A 32 GTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ 110 (452)
T ss_dssp TTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred CCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccc
Confidence 78888888999999888754445555433 2367889999999 777765 4578888876321 1
Q ss_pred EEEEcC------CCCCEEEEEEeC---CCCEEEEEeCCCcEEEEECCCCceeeceeeeeecc--CCCCCCCCeEEEEEeC
Q 003871 579 KAKLKG------HQNRITCLAYSL---SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT--GLVPETTIVNHIQFHP 647 (790)
Q Consensus 579 ~~~l~~------h~~~v~~l~~sp---dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~--~~~~~~~~v~~i~~sp 647 (790)
.+.+.- ...+|..+.|+| .+..|++-..|++|++||+........ .+..... +.......|.+++|.+
T Consensus 111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT
T ss_pred eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC
Confidence 122321 246799999999 456899999999999999986322111 1110100 1111114788999999
Q ss_pred CCCEEEE-E--eCCcEEEE
Q 003871 648 DQIHLLS-I--HEGQIDVY 663 (790)
Q Consensus 648 ~~~~l~~-~--~dg~I~iw 663 (790)
++-.|.+ . .+|.|+-.
T Consensus 190 ~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 190 DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TSSCEEEEECTTSCEEEEE
T ss_pred CCcEEEEEecCCCCCEEEE
Confidence 8876666 3 45666543
No 327
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.32 Score=50.08 Aligned_cols=196 Identities=8% Similarity=0.009 Sum_probs=102.3
Q ss_pred EEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEe-c-CCeEEEEE
Q 003871 455 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSA-S-GGKISIFS 531 (790)
Q Consensus 455 ~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~-s-dg~I~vwd 531 (790)
.++.++.||.|.-.|..+++. .|....+.............. . +..++.. . ||.|..++
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~------------~W~~~~~~~~p~~~~~~~~~~------~~~~~~vv~p~~dG~l~a~~ 73 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHI------------IWSIEPENFQPLIEIQEPSRL------ETYETLIIEPFGDGNIYYFN 73 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEE------------EEEECGGGSCCSEECCCSCTT------TSSEEEEECCSTTTEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcE------------EEEecCCccCCcEEecCCccc------cCCcEEEEEECCCCEEEEEE
Confidence 578888899998888877665 565444310000000000000 2 3344443 3 89999999
Q ss_pred CCCCcEEEEEcC----CCCCeEE---EEE------cCCCeEEEEeCCCcEEEEeCCCCceEEEEcCCC--CC-----EEE
Q 003871 532 LETFQTLATFAN----PPPIATY---FIL------LPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ--NR-----ITC 591 (790)
Q Consensus 532 ~~~~~~~~~~~~----~~~~v~~---l~~------s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h~--~~-----v~~ 591 (790)
..+|.....+.. ...++.. ..+ +.+|.+++|+.+|.++-.|+.+|+.+..+.... +. ..|
T Consensus 74 ~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~ 153 (339)
T 2be1_A 74 AHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDC 153 (339)
T ss_dssp TTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---------
T ss_pred CCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccc
Confidence 988865554431 1122221 001 123388999999999999999999998886421 11 111
Q ss_pred EEEe-----CCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCe-EEEEEeCCCCEEEEEeCCcEEEEEC
Q 003871 592 LAYS-----LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-NHIQFHPDQIHLLSIHEGQIDVYEA 665 (790)
Q Consensus 592 l~~s-----pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v-~~i~~sp~~~~l~~~~dg~I~iwd~ 665 (790)
.... ..+..++.+..+..+.+.+ ++|+ ........... ... ...+ .....+.|+.++++..||.|.-+|.
T Consensus 154 ~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~-~~~-~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~ 229 (339)
T 2be1_A 154 SPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQ-NVL-DVPLALQNTFSKDGMCIAPFRDKSLLASDL 229 (339)
T ss_dssp -----------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEEC-CTT-THHHHTTCSSCSSSCCEEEETTTEEEEECS
T ss_pred ccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccc-ccc-ccccccccccccCCcEEEECCCCEEEEEEC
Confidence 1111 1235677777777777766 4443 22222211100 000 0000 0001123566666667888888888
Q ss_pred CCCceee
Q 003871 666 PTLNHTS 672 (790)
Q Consensus 666 ~~~~~~~ 672 (790)
.+|+.+-
T Consensus 230 ~~G~~~W 236 (339)
T 2be1_A 230 DFRIARW 236 (339)
T ss_dssp TTCCEEE
T ss_pred CCCcEEE
Confidence 7777653
No 328
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.92 E-value=0.0031 Score=49.47 Aligned_cols=60 Identities=13% Similarity=0.336 Sum_probs=45.1
Q ss_pred ccccCCCchhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh--HHHHHHHHhcCCHHHHHHH
Q 003871 5 KMCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFN--VHRFGEIVMNGEWEKAEKY 64 (790)
Q Consensus 5 ~~~~~~~~~~e~~~li~q~l~~~g~~~s~~~l~~Esg~~~~--~~~~~~~i~~g~w~~~~~~ 64 (790)
+|++..+.++|+-+-|++||...||.+++.+|.+|.|+..+ ...=-.-+|+-+|..+.++
T Consensus 2 ~miLt~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRL 63 (88)
T 1uuj_A 2 AMVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRL 63 (88)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHH
Confidence 35565567889999999999999999999999999998874 2222355666677665544
No 329
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.90 E-value=0.96 Score=46.98 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=44.7
Q ss_pred CcEEEEec--CCeEEEEECCC--CcEEEEEcC-C-CCCe-EEEEEcCCC-eEEEEeC-C---------CcEEEEeCCCCc
Q 003871 516 GSHLFSAS--GGKISIFSLET--FQTLATFAN-P-PPIA-TYFILLPQD-LFAFGFD-D---------SSILVHCPCTKK 577 (790)
Q Consensus 516 ~~~l~s~s--dg~I~vwd~~~--~~~~~~~~~-~-~~~v-~~l~~s~~g-~l~sgs~-d---------g~I~iwd~~~~~ 577 (790)
+.+++.|+ ...+.+||..+ .+.. .+.. + .... .+++. -++ .++.|+. + ..+.+||..+.+
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~-~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWT-ALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEE-ECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCee-ECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 56666666 46899999864 3222 2221 1 1111 22222 256 5555554 2 368999998764
Q ss_pred eEEEEcC-C-CCC-EEEEEEeCCCCEEEEEeCC
Q 003871 578 TKAKLKG-H-QNR-ITCLAYSLSLNVLVSSGAD 607 (790)
Q Consensus 578 ~~~~l~~-h-~~~-v~~l~~spdg~~l~s~s~d 607 (790)
-.. +.. . ... -.+++. .+++.++.|+.+
T Consensus 98 W~~-~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 98 WVK-LMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp EEE-CSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred EEE-CCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 322 211 1 111 112222 567788888765
No 330
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.84 E-value=0.93 Score=46.14 Aligned_cols=177 Identities=13% Similarity=0.044 Sum_probs=87.3
Q ss_pred EEEEECCCCcEEEEEcCCCCCe-EEEEEcCCC-eEEEEeCC--------CcEEEEeCCCCceEE--EEcCCCCCEEEEEE
Q 003871 527 ISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDD--------SSILVHCPCTKKTKA--KLKGHQNRITCLAY 594 (790)
Q Consensus 527 I~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~g-~l~sgs~d--------g~I~iwd~~~~~~~~--~l~~h~~~v~~l~~ 594 (790)
+..||..+++-...-..+.... .+++.. ++ .++.|+.+ ..+.+||..+++-.. .+....... +++
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~- 145 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVL- 145 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEE-
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEE-
Confidence 7788988765432111111111 122222 55 55566532 368999998764321 111111111 122
Q ss_pred eCCCCEEEEEeC-C-----CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCC-----cEEE
Q 003871 595 SLSLNVLVSSGA-D-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG-----QIDV 662 (790)
Q Consensus 595 spdg~~l~s~s~-d-----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg-----~I~i 662 (790)
..+++.++.|+. + ..+.+||..+.+-. .+..++.... ....+.+ +++.++. |.++ .+.+
T Consensus 146 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~----~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 216 (315)
T 4asc_A 146 SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWK---ELAPMQTARS----LFGATVH--DGRIIVAAGVTDTGLTSSAEV 216 (315)
T ss_dssp EETTEEEEECCBCTTSCBCCCEEEEETTTTEEE---ECCCCSSCCB----SCEEEEE--TTEEEEEEEECSSSEEEEEEE
T ss_pred EECCEEEEEeCCCCCCcccceEEEEeCCCCeEE---ECCCCCCchh----ceEEEEE--CCEEEEEeccCCCCccceEEE
Confidence 235667777775 2 46899999875422 2222222211 1222222 5555555 4332 4889
Q ss_pred EECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC--------------CeEEEEECCCCeEEEE
Q 003871 663 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--------------GHVKVFDTSTLELRCQ 717 (790)
Q Consensus 663 wd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d--------------g~i~vwd~~~~~~~~~ 717 (790)
||+.+.+-...-... .......+..-+++.++.|+.+ ..+.+||+.+.+-...
T Consensus 217 yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 217 YSITDNKWAPFEAFP--QERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EETTTTEEEEECCCS--SCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred EECCCCeEEECCCCC--CcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 999876533221111 1111112223367777777764 2477889888764443
No 331
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.82 E-value=0.34 Score=58.53 Aligned_cols=190 Identities=12% Similarity=0.121 Sum_probs=115.1
Q ss_pred cEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCC-ceEEEEcCC----CCCEEE
Q 003871 517 SHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGH----QNRITC 591 (790)
Q Consensus 517 ~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~-~~~~~l~~h----~~~v~~ 591 (790)
+.++.-.+.++.++|+++...++.+.- ..+|..=.|-.+..|+..+ +..|+.|++... .+.+.+..| ...|..
T Consensus 78 ~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIin 155 (1630)
T 1xi4_A 78 KVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIIN 155 (1630)
T ss_pred ceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEE
Confidence 344544578999999998887777664 3456555665444333333 458999999642 444555444 345667
Q ss_pred EEEeCCCCEEEEEe-------CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEe--C-CCCEEEEE----eC
Q 003871 592 LAYSLSLNVLVSSG-------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--P-DQIHLLSI----HE 657 (790)
Q Consensus 592 l~~spdg~~l~s~s-------~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~s--p-~~~~l~~~----~d 657 (790)
-..+++.++++..| -.|.+.+|..+.+. -+ ...||. +....+... + ....++.+ ..
T Consensus 156 Y~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ-~iegha---~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 156 YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQ-PIEGHA---ASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred eeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------ch-hhhHhH---hhhheeccCCCCCCceEEEEEEecCCC
Confidence 77788999877544 34778888887632 11 333554 222222221 1 12233323 23
Q ss_pred CcEEEEECCCC---c------eeeeecC-CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 003871 658 GQIDVYEAPTL---N------HTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 718 (790)
Q Consensus 658 g~I~iwd~~~~---~------~~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~ 718 (790)
+.++|.++... . .+..+.+ ........++..|+.-..++.-+.-|.|++||+.||..+..-
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 67899988542 1 1111111 112445667888888788888889999999999999876553
No 332
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.71 E-value=0.53 Score=49.08 Aligned_cols=145 Identities=11% Similarity=0.010 Sum_probs=81.0
Q ss_pred CCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCc-eEEEEc---CCCCCEEEEEEeCC---CCEEEEEeC----C----CcE
Q 003871 546 PIATYFILLPQDLFAFGFDDSSILVHCPCTKK-TKAKLK---GHQNRITCLAYSLS---LNVLVSSGA----D----AQL 610 (790)
Q Consensus 546 ~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~-~~~~l~---~h~~~v~~l~~spd---g~~l~s~s~----d----g~I 610 (790)
.....++|.|+|.++++..+|.|+++| .+++ .+..+. ........++++|+ +..|..+.. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 446799999999555556679999997 3454 222221 12346889999997 445544432 3 567
Q ss_pred EEEECCCC--ceeeceee-eeeccCCCCCCCCeEEEEEeCCCCEEEE-EeC-------------CcEEEEECCCCce---
Q 003871 611 CVWDAVGW--KKLCSKFL-HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-------------GQIDVYEAPTLNH--- 670 (790)
Q Consensus 611 ~vwd~~~~--~~~~~~~l-~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~d-------------g~I~iwd~~~~~~--- 670 (790)
..|+.... .......+ ..++.... .....++|.|||.+.++ +.. |.|.-++.. ++.
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~---h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~ 183 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYI---HNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPAD 183 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSS---CCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTT
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCC---cCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCC
Confidence 77887653 11111111 21332111 13467999999986666 321 356666653 221
Q ss_pred -----eeeecCCCCCCCeEEEEEec-CCCEEEE
Q 003871 671 -----TSQLVPDKMDLPITYATYSC-DGKCIYV 697 (790)
Q Consensus 671 -----~~~~~~~~h~~~v~~l~~s~-dg~~l~s 697 (790)
...+.. . ......++|+| +|++.++
T Consensus 184 npf~~~~i~a~-G-~rnp~Gla~d~~~g~l~v~ 214 (354)
T 3a9g_A 184 NPFPNSPIWSY-G-HRNPQGIDWHRASGVMVAT 214 (354)
T ss_dssp SSSTTCCEEEE-C-CSCCCEEEECTTTCCEEEE
T ss_pred CCCCCCcEEEE-c-cCCcceEEEeCCCCCEEEE
Confidence 111111 1 23456899999 5665554
No 333
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.66 E-value=1.1 Score=45.55 Aligned_cols=176 Identities=10% Similarity=0.005 Sum_probs=89.2
Q ss_pred CeEEEEECCCCcEEEEEcCC--CCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEE--EcCCCCCEEEEEE
Q 003871 525 GKISIFSLETFQTLATFANP--PPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK--LKGHQNRITCLAY 594 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~~~~~--~~~v~~l~~s~~g-~l~sgs~d-----g~I~iwd~~~~~~~~~--l~~h~~~v~~l~~ 594 (790)
..+.+||..+.+....-... ......+.+ ++ .++.|+.+ ..+.+||..+++-... +.........+.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 46889998876533221111 111222222 56 66666533 3688999887643221 1111111122222
Q ss_pred eCCCCEEEEEeCC-----CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eC-----CcEEEE
Q 003871 595 SLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-----GQIDVY 663 (790)
Q Consensus 595 spdg~~l~s~s~d-----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d-----g~I~iw 663 (790)
+++.++.|+.+ ..+.+||+.+.+-. .+..++.... ....+.+ +++.++.| .+ ..+.+|
T Consensus 168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~----~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWR---MITAMNTIRS----GAGVCVL--HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEE---ECCCCSSCCB----SCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred --CCEEEEEeCCCCCCcCceEEEEeCCCCeEe---eCCCCCCccc----cceEEEE--CCEEEEEeCCCCCCccceEEEE
Confidence 56777777654 45889999875422 2222222211 2222333 55555554 32 469999
Q ss_pred ECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEE
Q 003871 664 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELR 715 (790)
Q Consensus 664 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d-----g~i~vwd~~~~~~~ 715 (790)
|+.+.+-...-......... +++ .-+++.++.|+.+ ..+.+||..+.+-.
T Consensus 237 d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 237 DVETETWTFVAPMKHRRSAL-GIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp ETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred eCCCCcEEECCCCCCCccce-EEE-EECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 99876533221111001111 222 2367777887754 46888998887543
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.65 E-value=1.3 Score=46.02 Aligned_cols=56 Identities=5% Similarity=-0.012 Sum_probs=30.8
Q ss_pred cEEEEECCCCce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcCC------eEEEEECCCCeEEEEe
Q 003871 659 QIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG------HVKVFDTSTLELRCQI 718 (790)
Q Consensus 659 ~I~iwd~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg------~i~vwd~~~~~~~~~~ 718 (790)
.+.+||+.+.+- +..+.. ......++..+++.++.|+.++ .|.++++++++.....
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~----~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQ----GRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp CCEEEECC---CEEEEECSS----CCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eEEEEecCCCceeeCCCCCC----CcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 478999886543 222221 1111223445788888888652 4667788888766554
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.60 E-value=0.73 Score=49.93 Aligned_cols=187 Identities=10% Similarity=0.050 Sum_probs=110.9
Q ss_pred CcEEEEec--CCeEEEEECCCCcEEEEEcC-CCCCeEEEEEc--CCC-eEEEEeCC-------CcEE------------E
Q 003871 516 GSHLFSAS--GGKISIFSLETFQTLATFAN-PPPIATYFILL--PQD-LFAFGFDD-------SSIL------------V 570 (790)
Q Consensus 516 ~~~l~s~s--dg~I~vwd~~~~~~~~~~~~-~~~~v~~l~~s--~~g-~l~sgs~d-------g~I~------------i 570 (790)
|++++.-. ...|-..+++..++-+.+.- ....+..+.+- |+- +++.++.. |... .
T Consensus 142 GrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~ 221 (638)
T 3sbq_A 142 GKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNA 221 (638)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEE
T ss_pred eEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEE
Confidence 77788777 67899999999988777763 35567888876 555 77776643 2210 1
Q ss_pred EeCCCCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC---------------cEEEEECCC-------Cce--ee---c
Q 003871 571 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---------------QLCVWDAVG-------WKK--LC---S 623 (790)
Q Consensus 571 wd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg---------------~I~vwd~~~-------~~~--~~---~ 623 (790)
.|..+.+....+.- .+....+...++|++.++.+.+. .+.++|+.. |+. +. .
T Consensus 222 iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv 300 (638)
T 3sbq_A 222 IDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKT 300 (638)
T ss_dssp EETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred EcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCe
Confidence 12222222111110 11222345577778877665432 255555431 111 00 0
Q ss_pred -------------eeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEECCCC------ce-------eeeec
Q 003871 624 -------------KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTL------NH-------TSQLV 675 (790)
Q Consensus 624 -------------~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~~~------~~-------~~~~~ 675 (790)
..+..++.. .....+.++|||++++++ .+.++.++|++.. +. +....
T Consensus 301 ~ViD~~~~~~~~~~~~~~iP~p-----ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e 375 (638)
T 3sbq_A 301 PVLDGRKKDGKDSKFTRYVPVP-----KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE 375 (638)
T ss_dssp CEEECSCBTTBCCSSEEEEEES-----SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB
T ss_pred eEEccccccccCCceEEEEeCC-----CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc
Confidence 011111221 244568899999999995 6889999998731 11 22222
Q ss_pred CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 676 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 676 ~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
-.......+|+++|.-..+-.-|..|..|++..
T Consensus 376 ---~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 376 ---LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp ---CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred ---CCCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 256788999999995555666899999999875
No 336
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.50 E-value=1.6 Score=47.21 Aligned_cols=110 Identities=13% Similarity=0.048 Sum_probs=64.2
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCC--CCCCCeEEEEEeCC---CCEEEEE--e---
Q 003871 587 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV--PETTIVNHIQFHPD---QIHLLSI--H--- 656 (790)
Q Consensus 587 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~--~~~~~v~~i~~sp~---~~~l~~~--~--- 656 (790)
....+++|.|+|+++++-...+.|++++..++... .+..+..... ........|+|+|+ +..|.++ .
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~---~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK---TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe---EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 45679999999997776554457888887654422 2221222110 00146789999996 5566653 2
Q ss_pred ---------CCcEEEEECCCC-------ceee-eecCCCCCCCeEEEEEecCCCEEEEEEc
Q 003871 657 ---------EGQIDVYEAPTL-------NHTS-QLVPDKMDLPITYATYSCDGKCIYVSCK 700 (790)
Q Consensus 657 ---------dg~I~iwd~~~~-------~~~~-~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 700 (790)
...|.-|+...+ +.+. .+.. ........++|.|||++.++.+.
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECC
Confidence 234666665322 1111 1221 12345789999999987776553
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.46 E-value=2.6 Score=42.82 Aligned_cols=222 Identities=13% Similarity=0.093 Sum_probs=110.0
Q ss_pred CeEEEEECCCCcEEEE-EcCCCCCeEEEEEcCCC-eEEEEeC----CC-------cEEEEeCCCCceEEE--EcCCCCCE
Q 003871 525 GKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFD----DS-------SILVHCPCTKKTKAK--LKGHQNRI 589 (790)
Q Consensus 525 g~I~vwd~~~~~~~~~-~~~~~~~v~~l~~s~~g-~l~sgs~----dg-------~I~iwd~~~~~~~~~--l~~h~~~v 589 (790)
..+..||..+++.... ...............++ .++.|+. ++ .+..||..+++-... +.......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 3588999988765442 22112222333344556 6667762 12 277889887653221 11111111
Q ss_pred EEEEEeCCCCEEEEEeCC-------CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-e-C---
Q 003871 590 TCLAYSLSLNVLVSSGAD-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H-E--- 657 (790)
Q Consensus 590 ~~l~~spdg~~l~s~s~d-------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~-d--- 657 (790)
..+.+ +++.++.|+.+ ..+.+||..+.+-. .+..++.... .- +++. .+++.++.| . +
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~----~~-~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS---EVKNLPIKVY----GH-NVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE---EECCCSSCEE----SC-EEEE-ETTEEEEECCEESSSC
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEe---ECCCCCCccc----cc-EEEE-ECCEEEEEcCCCCCCC
Confidence 22222 56777777754 24788998875422 2221222111 11 1222 355555553 2 2
Q ss_pred --CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEeccccccCCCCcc
Q 003871 658 --GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTIS 730 (790)
Q Consensus 658 --g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d-----g~i~vwd~~~~~~~~~~~~~~~~~~gh~~ 730 (790)
..+.+||+.+.+-... ........-.+++ .-+++.++.|+.+ ..+.+||..+.+-...-. .+.....
T Consensus 173 ~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~~ 246 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDL-APMKTPRSMFGVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE----FPQERSS 246 (318)
T ss_dssp BCCCEEEEETTTTEEEEE-CCCSSCCBSCEEE-EETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCC----CSSCCBS
T ss_pred ccceEEEEcCCCCEEEEC-CCCCCCcccceEE-EECCEEEEEcCcCCCCccceEEEEECCCCeEEECCC----CCCcccc
Confidence 3599999987653322 1111111111222 2367777777754 357889998875433211 1111101
Q ss_pred cccceEEEEEecCCCCEEEEEeCC--------------CcEEEEecCCCccccccC
Q 003871 731 LELYPLVIAAHPLEPNRIALGLTN--------------GRVHVIEPLESEVEWGKL 772 (790)
Q Consensus 731 ~~v~~~~v~~sp~d~~~las~s~D--------------g~i~iW~~~~~~~~w~~~ 772 (790)
. +++.. ++.+++.||.+ ..+.+||+.+. .|...
T Consensus 247 ---~--~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~ 293 (318)
T 2woz_A 247 ---I--SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK--EWAGM 293 (318)
T ss_dssp ---C--EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT--EEEEE
T ss_pred ---e--EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC--Eehhh
Confidence 1 22222 56777777754 35777887765 48654
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.44 E-value=0.15 Score=48.39 Aligned_cols=147 Identities=14% Similarity=0.122 Sum_probs=83.6
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce------EEEE--cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 003871 547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKT------KAKL--KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (790)
Q Consensus 547 ~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~------~~~l--~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~ 617 (790)
.+..++|+|+| +.++ .+|.++-.+..+... -..+ .+... -.++.|.|+|.+.++ .||.|+-++..+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 56799999988 5555 678888777655221 1111 01111 468899999988777 469888777643
Q ss_pred Cceeec-eeeeeecc-CCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCce-----eeeecCCCCCCCeEEEEEec
Q 003871 618 WKKLCS-KFLHSFQT-GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH-----TSQLVPDKMDLPITYATYSC 690 (790)
Q Consensus 618 ~~~~~~-~~l~~~~~-~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~-----~~~~~~~~h~~~v~~l~~s~ 690 (790)
...... ..-..+-. +- ..+..|.|.|+|.+.++. |+.++-....++.. ..+..+...-.....+.|++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw----~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGW----SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp STTCCHHHHSEEEECSSG----GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred CCCCceeccccEeccCCC----CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 211100 00000111 11 368999999999988888 88865443332211 01111111233455567888
Q ss_pred CCCEEEEEEcCCeEE
Q 003871 691 DGKCIYVSCKSGHVK 705 (790)
Q Consensus 691 dg~~l~sgs~dg~i~ 705 (790)
+|...++. +|.++
T Consensus 192 ~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 192 VGTLFGVQ--GGKFY 204 (236)
T ss_dssp TSCEEEEE--TTEEE
T ss_pred CCcEEEEe--CCeEE
Confidence 88766655 66443
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.37 E-value=0.9 Score=55.03 Aligned_cols=238 Identities=10% Similarity=0.064 Sum_probs=133.7
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEEEecCC
Q 003871 447 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGG 525 (790)
Q Consensus 447 l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~s~sdg 525 (790)
...+|..+.+|. -...++.|+|+.+... +... ....+|.--.|- .+.|+..++.
T Consensus 71 AIMnP~~~iiAL-rag~~lQiFnl~~k~k--------------------lks~----~~~e~VvfWkWis~~~l~lVT~~ 125 (1630)
T 1xi4_A 71 AIMNPASKVIAL-KAGKTLQIFNIEMKSK--------------------MKAH----TMTDDVTFWKWISLNTVALVTDN 125 (1630)
T ss_pred hccCCCcceEEE-ecCCeEEEeehHHhhh--------------------hccc----ccCCCceEEEecCCCeeEEEcCC
Confidence 346787774444 4478899999876433 1111 134566666777 8888888899
Q ss_pred eEEEEECCC-CcEEEEEcCC----CCCeEEEEEcCCC--eEEEEe------CCCcEEEEeCCCCceEEEEcCCCCCEEEE
Q 003871 526 KISIFSLET-FQTLATFANP----PPIATYFILLPQD--LFAFGF------DDSSILVHCPCTKKTKAKLKGHQNRITCL 592 (790)
Q Consensus 526 ~I~vwd~~~-~~~~~~~~~~----~~~v~~l~~s~~g--~l~sgs------~dg~I~iwd~~~~~~~~~l~~h~~~v~~l 592 (790)
.|.-|++.. ..+.+.|..| ...|..-..+++. .+++|- -.|.+.+|..+.+ ..+.+.||.+....+
T Consensus 126 aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~ 204 (1630)
T 1xi4_A 126 AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQF 204 (1630)
T ss_pred eEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhhee
Confidence 999999964 3444444444 3456677778888 444442 3468888987643 345566776544333
Q ss_pred EEe--C-CCCEEEEEeC---CCcEEEEECCCC---c-eeeceeeee-eccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcE
Q 003871 593 AYS--L-SLNVLVSSGA---DAQLCVWDAVGW---K-KLCSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI 660 (790)
Q Consensus 593 ~~s--p-dg~~l~s~s~---dg~I~vwd~~~~---~-~~~~~~l~~-~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I 660 (790)
... + ..+.++.+.. .+.++|-++... . ....+.+.. ++.... .+-..++..++....+.. ..-|.|
T Consensus 205 ~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~--~Dfpv~~~vs~k~g~iy~itk~G~~ 282 (1630)
T 1xi4_A 205 KMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ--NDFPVAMQISEKHDVVFLITKYGYI 282 (1630)
T ss_pred ccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccc--cCcceEEEeccccCEEEEEecCceE
Confidence 332 1 1223333322 268888888542 1 000011110 111111 134456777776656655 688999
Q ss_pred EEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003871 661 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 714 (790)
Q Consensus 661 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~ 714 (790)
++||+.++.++..-.. ...+|...+-+....-+++....|.|.--.+.....
T Consensus 283 ~~~d~~t~~~i~~~ri--s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 283 HLYDLETGTCIYMNRI--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred EEEecccchhhhhccc--cCCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 9999999988654332 133444434343333334444566665555554443
No 340
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.14 E-value=0.53 Score=49.09 Aligned_cols=108 Identities=9% Similarity=-0.012 Sum_probs=59.9
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeec---cCCCCCCCCeEEEEEeCC---CCEEEEE--e--
Q 003871 587 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ---TGLVPETTIVNHIQFHPD---QIHLLSI--H-- 656 (790)
Q Consensus 587 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~---~~~~~~~~~v~~i~~sp~---~~~l~~~--~-- 656 (790)
.....++|.|+|++++++...|.|++++... ... ..+..++ .... .....++++|+ +..|.++ .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~--~~~~~~~~v~~~g~---~g~~gia~~pdf~~~g~lYv~~~~~~ 91 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLS--APLSGVPDVWAHGQ---GGLLDVVLAPDFAQSRRIWLSYSEVG 91 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EEC--CCCBSCCCCCCSTT---CSEEEEEECTTHHHHCEEEEEEEEEC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-cee--eEecCCcccccCCC---CCceeEEECCCCCCCCEEEEEEeCCC
Confidence 3568999999998344455679999998643 211 1111111 1111 46789999996 5555553 2
Q ss_pred -----CCcEEEEECCCC--c--eeeee-c--CC--CCCCCeEEEEEecCCCEEEEEEc
Q 003871 657 -----EGQIDVYEAPTL--N--HTSQL-V--PD--KMDLPITYATYSCDGKCIYVSCK 700 (790)
Q Consensus 657 -----dg~I~iwd~~~~--~--~~~~~-~--~~--~h~~~v~~l~~s~dg~~l~sgs~ 700 (790)
...|..|+.... . ....+ . .. ........++|.|||.+.++.+.
T Consensus 92 ~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 92 DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 235777766432 1 11111 1 10 01122467999999965555443
No 341
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.10 E-value=2.7 Score=42.50 Aligned_cols=170 Identities=11% Similarity=0.120 Sum_probs=96.3
Q ss_pred ecCcEEEEec---CCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEe-CC-------------CcEEEEeCCC
Q 003871 514 LRGSHLFSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF-DD-------------SSILVHCPCT 575 (790)
Q Consensus 514 ~s~~~l~s~s---dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs-~d-------------g~I~iwd~~~ 575 (790)
+.+..++... ++.|...+.+... ...+... .+--++++| .|+-.. .+ ..|+..++..
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 3455555543 4667767665333 3333321 233457788 554443 32 4678888776
Q ss_pred CceEEEEcCCCCCEEEEEEeCCCCEEEEEe----CCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCE
Q 003871 576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSG----ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 651 (790)
Q Consensus 576 ~~~~~~l~~h~~~v~~l~~spdg~~l~s~s----~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~ 651 (790)
++.. .+.. .. +..|++++++|+-.. .+..|...++.+... .. +... .+ .+++|+++.
T Consensus 98 ~~~~-~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~---~~---lt~~------~~--~~~~~~g~~ 158 (302)
T 3s25_A 98 HGST-VLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK---KK---IKNH------YL--FTCNTSDRY 158 (302)
T ss_dssp CCCE-EEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC---EE---EESS------CC--CCSEEETTE
T ss_pred Ccce-Eeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe---EE---EeCC------Cc--eEeeEECCE
Confidence 5432 3322 12 236788899988776 244566666665221 11 2221 22 456888988
Q ss_pred EEEEe--CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC--CeEEEEECCCCe
Q 003871 652 LLSIH--EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--GHVKVFDTSTLE 713 (790)
Q Consensus 652 l~~~~--dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d--g~i~vwd~~~~~ 713 (790)
|+-.. ...|+..++..+... .+.. .... ..++|++++|+-...+ ..|..-++.++.
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~~-~l~~----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSEA-LFYD----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEEE-EEEC----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred EEEEeCCCceEEEEECCCCCEE-EEeC----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 88653 567999998765543 3321 2222 3466999998876644 367777777655
No 342
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=95.01 E-value=0.019 Score=45.43 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHhcCCch
Q 003871 13 YTHLITLIMKFLEEENFKESLQALEQESKIFF 44 (790)
Q Consensus 13 ~~e~~~li~q~l~~~g~~~s~~~l~~Esg~~~ 44 (790)
..||..||-.||.|.||..||-+|+.||++.-
T Consensus 5 sdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 5 SDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 89999999999999999999999999998875
No 343
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.86 E-value=2.3 Score=43.24 Aligned_cols=176 Identities=9% Similarity=0.031 Sum_probs=86.5
Q ss_pred EEEEECCCCcEEEE--EcCCCCCeEEEEEcCCC-eEEEEeCC-------CcEEEEeCCCCceEEEEcCCCCCE--EEEEE
Q 003871 527 ISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFDD-------SSILVHCPCTKKTKAKLKGHQNRI--TCLAY 594 (790)
Q Consensus 527 I~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~g-~l~sgs~d-------g~I~iwd~~~~~~~~~l~~h~~~v--~~l~~ 594 (790)
+..||..+.+-... +....... +++.. ++ .++.|+.+ ..+.+||..+.+-.. +.....+. .+++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~ 156 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLF-GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE-VKNLPIKVYGHNVIS 156 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSC-EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE-ECCCSSCEESCEEEE
T ss_pred EEEEeCCCCcEEECCCCCcccccc-ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE-CCCCCCcccccEEEE
Confidence 77888877654322 11111111 22222 56 55566543 258889988765332 21111111 11222
Q ss_pred eCCCCEEEEEeC------CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eC-----CcEEE
Q 003871 595 SLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-----GQIDV 662 (790)
Q Consensus 595 spdg~~l~s~s~------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d-----g~I~i 662 (790)
.+++.++.|+. -..+.+||+.+.+- ..+..++.... ....+.+ +++.++.| .+ ..+.+
T Consensus 157 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~r~----~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 226 (318)
T 2woz_A 157 -HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW---KDLAPMKTPRS----MFGVAIH--KGKIVIAGGVTEDGLSASVEA 226 (318)
T ss_dssp -ETTEEEEECCEESSSCBCCCEEEEETTTTEE---EEECCCSSCCB----SCEEEEE--TTEEEEEEEEETTEEEEEEEE
T ss_pred -ECCEEEEEcCCCCCCCccceEEEEcCCCCEE---EECCCCCCCcc----cceEEEE--CCEEEEEcCcCCCCccceEEE
Confidence 46677777764 23589999988542 12222222211 1222222 45555554 22 34789
Q ss_pred EECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC--------------CeEEEEECCCCeEEEE
Q 003871 663 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--------------GHVKVFDTSTLELRCQ 717 (790)
Q Consensus 663 wd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d--------------g~i~vwd~~~~~~~~~ 717 (790)
||+.+.+-...-... .......+...+++.++.|+.+ ..+.+||..+.+-...
T Consensus 227 yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 227 FDLKTNKWEVMTEFP--QERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EETTTCCEEECCCCS--SCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EECCCCeEEECCCCC--CcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 999876533221111 1111112223467777777754 3588899888765444
No 344
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.82 E-value=0.34 Score=46.00 Aligned_cols=141 Identities=9% Similarity=-0.011 Sum_probs=80.0
Q ss_pred eEEEEeCCCcEEEEeCCCCc------eEEEEcCC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeee-e
Q 003871 558 LFAFGFDDSSILVHCPCTKK------TKAKLKGH--QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-S 628 (790)
Q Consensus 558 ~l~sgs~dg~I~iwd~~~~~------~~~~l~~h--~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~-~ 628 (790)
+|++..+| +++.=...++. ....+ +. =..+..++|+|+|.+.++ .+|.+.-.+..+.......... .
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 56666666 66655444443 11222 12 135779999999987666 6777766665442211000000 0
Q ss_pred ecc-CCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceee-----eecCCCCCCCeEEEEEecCCCEEEEEEcCC
Q 003871 629 FQT-GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS-----QLVPDKMDLPITYATYSCDGKCIYVSCKSG 702 (790)
Q Consensus 629 ~~~-~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~-----~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg 702 (790)
+-. +. ....++.|.|+|.+.++ .||.|+-++..+...-. +..+...=..+..+.|.|+|.+.+.. |+
T Consensus 82 IG~~Gw----~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg 154 (236)
T 1tl2_A 82 IGNGGW----NQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQ 154 (236)
T ss_dssp EECSCG----GGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred eccccc----ccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CC
Confidence 100 11 12478999999988888 77999888764321110 11111112568999999999877666 78
Q ss_pred eEEEEEC
Q 003871 703 HVKVFDT 709 (790)
Q Consensus 703 ~i~vwd~ 709 (790)
.++-+..
T Consensus 155 ~lyr~~~ 161 (236)
T 1tl2_A 155 QFYKALP 161 (236)
T ss_dssp EEEEECC
T ss_pred cEEecCC
Confidence 7654433
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.65 E-value=1.6 Score=50.08 Aligned_cols=195 Identities=12% Similarity=0.066 Sum_probs=102.3
Q ss_pred CcEEEEec-C----CeEEEEECCCCcEEEEE-c-----CCCCC-eEEEEEcC-CC-eEEEEeCC------CcEEEEeCCC
Q 003871 516 GSHLFSAS-G----GKISIFSLETFQTLATF-A-----NPPPI-ATYFILLP-QD-LFAFGFDD------SSILVHCPCT 575 (790)
Q Consensus 516 ~~~l~s~s-d----g~I~vwd~~~~~~~~~~-~-----~~~~~-v~~l~~s~-~g-~l~sgs~d------g~I~iwd~~~ 575 (790)
+..++.|+ + ..+.+||..+++....- . .+... -.+++..+ ++ .++.|+.+ ..+.+||..+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 66666666 3 46889998877654432 1 11111 12333333 66 66666643 2588999887
Q ss_pred CceEEE--EcCCCCCEEEEEEeCCCCEEEEEeCCC--cEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC-CC
Q 003871 576 KKTKAK--LKGHQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QI 650 (790)
Q Consensus 576 ~~~~~~--l~~h~~~v~~l~~spdg~~l~s~s~dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~-~~ 650 (790)
.+-... +..... -.+++.-.+++.++.|+.++ .+.+||..+..-.........+... ....++.+..+ ++
T Consensus 478 ~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 478 REWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPVSKQ 552 (695)
T ss_dssp TEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETTTTE
T ss_pred CcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCCCCE
Confidence 643221 111111 11233324788888888655 6999999885422111100022221 12334566665 55
Q ss_pred EEEEE-e--C-----CcEEEEECCCCce-----eeeecCC-CCCCCeEEEEEecCCCEEEEEEcC--------CeEEEEE
Q 003871 651 HLLSI-H--E-----GQIDVYEAPTLNH-----TSQLVPD-KMDLPITYATYSCDGKCIYVSCKS--------GHVKVFD 708 (790)
Q Consensus 651 ~l~~~-~--d-----g~I~iwd~~~~~~-----~~~~~~~-~h~~~v~~l~~s~dg~~l~sgs~d--------g~i~vwd 708 (790)
.++.| . + +.+.+||+.+..- -..+... .....-.+++...+++.++.||.+ ..+.+||
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 55554 3 2 3489999987761 1111110 001111123333447778888743 4699999
Q ss_pred CCCCeEE
Q 003871 709 TSTLELR 715 (790)
Q Consensus 709 ~~~~~~~ 715 (790)
..+.+-.
T Consensus 633 ~~t~~W~ 639 (695)
T 2zwa_A 633 PLSETLT 639 (695)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 9988654
No 346
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.14 E-value=3.1 Score=44.78 Aligned_cols=107 Identities=13% Similarity=0.067 Sum_probs=61.0
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE--EEEcC------CCCCEEEEEEeCC---CCEEEEEeC------
Q 003871 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK--AKLKG------HQNRITCLAYSLS---LNVLVSSGA------ 606 (790)
Q Consensus 545 ~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~~~~~~--~~l~~------h~~~v~~l~~spd---g~~l~s~s~------ 606 (790)
-...+.++|.|+| ++++-...+.|++++..+++.. ..+.. .......|+|+|| +..|..+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456799999999 5555433347998886655432 22321 2356789999995 455544432
Q ss_pred -------CCcEEEEECCCC--ceeeceee-eeeccCCCCCCCCeEEEEEeCCCCEEEE
Q 003871 607 -------DAQLCVWDAVGW--KKLCSKFL-HSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (790)
Q Consensus 607 -------dg~I~vwd~~~~--~~~~~~~l-~~~~~~~~~~~~~v~~i~~sp~~~~l~~ 654 (790)
...|.-|+...+ .......+ ..++.... .....|+|.|||.+.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~---H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD---HQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS---CCEEEEEECTTSCEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC---CCCCeEeECCCCeEEEE
Confidence 134555655432 11111222 22332211 25789999999987776
No 347
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.10 E-value=5.5 Score=40.14 Aligned_cols=158 Identities=12% Similarity=0.075 Sum_probs=93.6
Q ss_pred eEEEEECCCCcEEEEEcCCCCCeEEEEEcCCC-eEEEEe----CCCcEEEEeCCCCceEEEEcCCCCCEEEEEEeCCCCE
Q 003871 526 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 600 (790)
Q Consensus 526 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sgs----~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~ 600 (790)
.|+..+++.++.. .+.. .. +..|++++ .|+-.. ....|+..++.. .....+..+.. .+++|+++.
T Consensus 89 ~Iy~i~~dg~~~~-~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 89 SLCRIKRNGHGST-VLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp EEEEEETTSCCCE-EEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTE
T ss_pred eEEEEeCCCCcce-Eeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCE
Confidence 5777777755432 2221 11 23677788 666554 344677777763 33445544432 456888888
Q ss_pred EEEEeC-CCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE--eC-CcEEEEECCCCceeeeecC
Q 003871 601 LVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPTLNHTSQLVP 676 (790)
Q Consensus 601 l~s~s~-dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~d-g~I~iwd~~~~~~~~~~~~ 676 (790)
|+-.+. ...|.+-++.++.. +. +..+ .. ...++|++.+|+-. .+ ..|..-++..+. ...+.
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~---~~---l~~~------~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt- 223 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSE---AL---FYDC------NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT- 223 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEE---EE---EECS------CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS-
T ss_pred EEEEeCCCceEEEEECCCCCE---EE---EeCC------Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe-
Confidence 887665 57888888877442 11 2121 22 23466999998864 22 468777876544 34443
Q ss_pred CCCCCCeEEEEEecCCCEEEEEEc--CCeEEEEECCCCe
Q 003871 677 DKMDLPITYATYSCDGKCIYVSCK--SGHVKVFDTSTLE 713 (790)
Q Consensus 677 ~~h~~~v~~l~~s~dg~~l~sgs~--dg~i~vwd~~~~~ 713 (790)
...+ ..|+|++++|+.++. .+.|..-+++...
T Consensus 224 ---~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 224 ---EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp ---CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred ---CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 2233 348899999886543 4677777776554
No 348
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.34 E-value=8.2 Score=39.64 Aligned_cols=233 Identities=11% Similarity=0.006 Sum_probs=122.3
Q ss_pred CCCCeEEEEec--CcEEEEec-CCeEEEEECCCCcEEE--EE----cCCCCCeEEEEEcCC----CeEEEE---eCCCcE
Q 003871 505 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA--TF----ANPPPIATYFILLPQ----DLFAFG---FDDSSI 568 (790)
Q Consensus 505 ~~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~~~~~~~--~~----~~~~~~v~~l~~s~~----g~l~sg---s~dg~I 568 (790)
.-.....++|. |.++++-. .|.|++++..+++... .+ .........++++|+ +.|++. ..++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 34567889998 77777777 7999999876665422 22 122456789999995 433332 244566
Q ss_pred EEEeCCCC----------ceE-EEEcC-CCCCEEEEEEeCCCCEEEEEeC-------------CCcEEEEECCCCceeec
Q 003871 569 LVHCPCTK----------KTK-AKLKG-HQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKLCS 623 (790)
Q Consensus 569 ~iwd~~~~----------~~~-~~l~~-h~~~v~~l~~spdg~~l~s~s~-------------dg~I~vwd~~~~~~~~~ 623 (790)
.-|....+ +.+ ..+.. ....-..++|.|||.+.++.++ .|.|.-.+.... ....
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~-ip~~ 188 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE-PAPG 188 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS-BCTT
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC-ccCC
Confidence 66765541 111 12321 1112457999999988777543 244544455431 0000
Q ss_pred ee---eeeeccCCCCCCCCeEEEEEeCCCCEEEE--EeCCcEEEEECCCCce------------------eeeecCCCCC
Q 003871 624 KF---LHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNH------------------TSQLVPDKMD 680 (790)
Q Consensus 624 ~~---l~~~~~~~~~~~~~v~~i~~sp~~~~l~~--~~dg~I~iwd~~~~~~------------------~~~~~~~~h~ 680 (790)
.+ ...+..++. ....++|+|+|.+.++ +.++.=.|--+..+.- +..+.. +.
T Consensus 189 nPf~~~~i~a~G~R----Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~--~~ 262 (347)
T 3das_A 189 NPFPGSPVYSYGHR----NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST--DE 262 (347)
T ss_dssp CSSTTCCEEEBCCS----BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT--TT
T ss_pred CCCCCCeEEeeCCC----CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC--CC
Confidence 00 011233443 4678999999887776 3443322222222211 111110 11
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEe
Q 003871 681 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 752 (790)
Q Consensus 681 ~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s 752 (790)
.....++|. +|..+...-..+.|....+..+..+.. ...++ .|. ... +.+++..| ||.++++.+
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~--~e~~l-~~~-~gR--~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAAD--PQAFL-EGE-YGR--LRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSC--CEEES-TTT-SSC--EEEEEEEE-TTEEEEEEC
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceecc--eEEee-cCC-CCC--ccEEEECC-CCcEEEEEc
Confidence 355677776 455555555556666666655432100 00011 121 123 44888899 787666543
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.67 E-value=8.1 Score=44.19 Aligned_cols=198 Identities=12% Similarity=0.076 Sum_probs=102.1
Q ss_pred CCC-eEEEEeCC----CcEEEEeCCCCceEEEE-c-----CCCC-CEEEEEEeC-CCCEEEEEeCCC------cEEEEEC
Q 003871 555 PQD-LFAFGFDD----SSILVHCPCTKKTKAKL-K-----GHQN-RITCLAYSL-SLNVLVSSGADA------QLCVWDA 615 (790)
Q Consensus 555 ~~g-~l~sgs~d----g~I~iwd~~~~~~~~~l-~-----~h~~-~v~~l~~sp-dg~~l~s~s~dg------~I~vwd~ 615 (790)
.++ .++.|+.+ ..+.+||..+++-...- . .... .-.+++..+ +++.++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 345 55666543 36888998877543222 1 0111 112333333 777888877543 5789999
Q ss_pred CCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEE-eC--CcEEEEECCCCceeeeec---CCCCCCCeEEEEEe
Q 003871 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE--GQIDVYEAPTLNHTSQLV---PDKMDLPITYATYS 689 (790)
Q Consensus 616 ~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~d--g~I~iwd~~~~~~~~~~~---~~~h~~~v~~l~~s 689 (790)
.+.+- ..+..++... .-.+++.-.+++.++.| .+ +.+.+||..+.+-...-. .......-..+.+.
T Consensus 476 ~t~~W---~~~~~~p~~R-----~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 476 KTREW---SMIKSLSHTR-----FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp TTTEE---EECCCCSBCC-----BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred CCCcE---EECCCCCCCc-----ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 88432 1222222221 11223332367777764 32 279999998765332211 00011122335556
Q ss_pred cC-CCEEEEEEc--C-----CeEEEEECCCCe------EEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCC-
Q 003871 690 CD-GKCIYVSCK--S-----GHVKVFDTSTLE------LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN- 754 (790)
Q Consensus 690 ~d-g~~l~sgs~--d-----g~i~vwd~~~~~------~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~D- 754 (790)
.+ ++.++.||. + +.+.+||+.+.. -............+| .++.+ . ++.+++.||.+
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-------~~~~~-~-~~~iyv~GG~~~ 618 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-------QIKYI-T-PRKLLIVGGTSP 618 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-------EEEEE-E-TTEEEEECCBCS
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-------eEEEe-C-CCEEEEECCccC
Confidence 55 667777776 2 468999998876 222111000001111 12222 2 36788888743
Q ss_pred -------CcEEEEecCCCcccccc
Q 003871 755 -------GRVHVIEPLESEVEWGK 771 (790)
Q Consensus 755 -------g~i~iW~~~~~~~~w~~ 771 (790)
..+.+||+.+.+ |..
T Consensus 619 ~~~~~~~~~v~~yd~~t~~--W~~ 640 (695)
T 2zwa_A 619 SGLFDRTNSIISLDPLSET--LTS 640 (695)
T ss_dssp SCCCCTTTSEEEEETTTTE--EEE
T ss_pred CCCCCCCCeEEEEECCCCe--EEE
Confidence 458899988764 653
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.24 E-value=9.1 Score=38.06 Aligned_cols=224 Identities=12% Similarity=0.041 Sum_probs=117.5
Q ss_pred CCeEEEEec-CcEEEEecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEEcCC
Q 003871 507 DSISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH 585 (790)
Q Consensus 507 ~~V~~l~~s-~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~~~~~~~l~~h 585 (790)
..|..++.. ...++.. ||.|..|-......+..-......|..++......++. . ||.|+.|-....-.+..-..-
T Consensus 24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~ 100 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEA 100 (282)
T ss_dssp SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGG
T ss_pred CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCccc
Confidence 356677766 5555555 99999997654221111111123567777654434444 4 899999976532111000011
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEEC
Q 003871 586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 665 (790)
Q Consensus 586 ~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~ 665 (790)
...|..++...+ +.+.-. ||.|+.|-........ + +.... ..|..++...+.. ++.. ||.|+.|-.
T Consensus 101 ~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg---~---~~~~~---~~i~~i~~G~~~~-~~l~-~G~v~~wG~ 166 (282)
T 3qhy_B 101 RSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT---V---PAEAQ---SGVTALDGGVYTA-LAVK-NGGVIAWGD 166 (282)
T ss_dssp SSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS---C---CGGGG---SSEEEEEECSSEE-EEEE-TTEEEEEEC
T ss_pred CCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC---C---CccCC---CCeEEEEcccCEE-EEEE-CCEEEEecC
Confidence 246778877654 333345 8999999876522111 1 11111 3577776654432 2334 789999976
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCC
Q 003871 666 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 745 (790)
Q Consensus 666 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 745 (790)
...-.+..-. .-...|..++...+- .++. .||.|+.|-....-.+.. +.. . ...|. .++-.. .
T Consensus 167 n~~gqlg~p~--~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~--p~~----~--~~~v~--~i~~G~--~ 229 (282)
T 3qhy_B 167 NYFGQTTVPA--EAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTV--PTE----A--LSGVS--AIASGE--W 229 (282)
T ss_dssp CTTSTTSCCG--GGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCC--CGG----G--GSSCC--EEEECS--S
T ss_pred CCCCCCCCce--ecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCC--Ccc----c--CCCce--EEEcCC--C
Confidence 5422211110 013457777665433 2333 599999997654321111 000 0 12344 565443 2
Q ss_pred CEEEEEeCCCcEEEEecCCCc
Q 003871 746 NRIALGLTNGRVHVIEPLESE 766 (790)
Q Consensus 746 ~~las~s~Dg~i~iW~~~~~~ 766 (790)
..++.. ||.|+.|--....
T Consensus 230 h~~al~--~g~v~~wG~n~~g 248 (282)
T 3qhy_B 230 YSLALK--NGKVIAWGSSRTA 248 (282)
T ss_dssp CEEEEE--TTEEEEESTTCCC
T ss_pred EEEEEE--CCEEEEecCCCCc
Confidence 344444 9999999876544
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.14 E-value=2.2 Score=46.36 Aligned_cols=138 Identities=12% Similarity=0.011 Sum_probs=82.6
Q ss_pred cEEEEeCCC----CceEEEEcCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCcee-------e-ceeeeeeccCC
Q 003871 567 SILVHCPCT----KKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKL-------C-SKFLHSFQTGL 633 (790)
Q Consensus 567 ~I~iwd~~~----~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~-dg~I~vwd~~~~~~~-------~-~~~l~~~~~~~ 633 (790)
.|.+.|.+. +..+..+-.-......+..+|||++++.++. +.++.++|++.-... . .........+
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G- 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG- 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-
Confidence 467777765 3222222223344567899999999877664 789999999852110 0 0011112223
Q ss_pred CCCCCCeEEEEEeCCCCEEEEE--eCCcEEEEECCCC----------ceeeeecCCCCCCCeEEEEE------ecCCCEE
Q 003871 634 VPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTL----------NHTSQLVPDKMDLPITYATY------SCDGKCI 695 (790)
Q Consensus 634 ~~~~~~v~~i~~sp~~~~l~~~--~dg~I~iwd~~~~----------~~~~~~~~~~h~~~v~~l~~------s~dg~~l 695 (790)
-.....+|.++| ..+++ -|.+|.-|++... ..+..+.. ...+-.+.- .|||+||
T Consensus 378 ----lGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv---~YqpGH~~~~~get~~~dGk~l 449 (638)
T 3sbq_A 378 ----LGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDV---HYQPGHLHASLCETNEADGKWL 449 (638)
T ss_dssp ----SCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEEC---SSCEEEEEETTTTSTTCCSCEE
T ss_pred ----CcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccc---ccCCcccccCCCccCCCCccEE
Confidence 357889999999 55554 7999999998642 23333322 223333333 4789999
Q ss_pred EEEEc---CC----------eEEEEECCCCe
Q 003871 696 YVSCK---SG----------HVKVFDTSTLE 713 (790)
Q Consensus 696 ~sgs~---dg----------~i~vwd~~~~~ 713 (790)
++... |+ .-.+.|+...+
T Consensus 450 v~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 450 VALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred EEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 98753 43 34777876554
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=87.49 E-value=24 Score=34.94 Aligned_cols=221 Identities=12% Similarity=0.036 Sum_probs=115.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccccccccccccccCCCceeeeecccCCCCCCeEEEEec-CcEEE
Q 003871 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLF 520 (790)
Q Consensus 442 ~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~l~ 520 (790)
..|..++.... +.++.. ||.+..|-....... | +. ......|..++.. ...++
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gql-g------------------~p----~~~~~~i~~ia~G~~hs~~ 77 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQL-T------------------MP----AATQSGVDAIAAGNYHSLA 77 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTT-S------------------CC----GGGGSCCCEEEECSSEEEE
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCC-C------------------CC----ccCCCCEEEEEeCCCEEEE
Confidence 35666665543 333345 899988875543220 0 00 0112356666666 55555
Q ss_pred EecCCeEEEEECCCCcEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCC-CceEEEEcCCCCCEEEEEEeCCCC
Q 003871 521 SASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLN 599 (790)
Q Consensus 521 s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~s~~g~l~sgs~dg~I~iwd~~~-~~~~~~l~~h~~~v~~l~~spdg~ 599 (790)
. .||.|..|-......+..-..-...|..++......++ -. ||.|+.|-... ++.- .-......|..++...+.
T Consensus 78 l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~a-l~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~- 152 (282)
T 3qhy_B 78 L-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYA-LK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVYT- 152 (282)
T ss_dssp E-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEE-EE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSE-
T ss_pred E-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEE-Ee-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccCE-
Confidence 5 48999999765421111101113467777765543333 34 89999997653 2211 111123457777665443
Q ss_pred EEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCC
Q 003871 600 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM 679 (790)
Q Consensus 600 ~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h 679 (790)
.+.-. ||.|..|-........ ++.... ..|..++...+. .++. .||.|+.|-....-.+..-. ..
T Consensus 153 -~~~l~-~G~v~~wG~n~~gqlg------~p~~~~---~~v~~i~~G~~h-s~al-~~G~v~~wG~n~~gqlg~p~--~~ 217 (282)
T 3qhy_B 153 -ALAVK-NGGVIAWGDNYFGQTT------VPAEAQ---SGVDDVAGGIFH-SLAL-KDGKVIAWGDNRYKQTTVPT--EA 217 (282)
T ss_dssp -EEEEE-TTEEEEEECCTTSTTS------CCGGGG---SSEEEEEECSSE-EEEE-ETTEEEEEECCTTSTTCCCG--GG
T ss_pred -EEEEE-CCEEEEecCCCCCCCC------CceecC---CCeEEEEecCCE-EEEE-ECCeEEEEECCCCCCCCCCc--cc
Confidence 22234 7999999876522111 111111 367777766554 3444 79999999765322211100 01
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003871 680 DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 680 ~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
...|..++...+-. ++.. ||.|+.|-...
T Consensus 218 ~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 218 LSGVSAIASGEWYS-LALK--NGKVIAWGSSR 246 (282)
T ss_dssp GSSCCEEEECSSCE-EEEE--TTEEEEESTTC
T ss_pred CCCceEEEcCCCEE-EEEE--CCEEEEecCCC
Confidence 34567776554433 3333 99999997654
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=87.31 E-value=30 Score=35.88 Aligned_cols=153 Identities=10% Similarity=0.103 Sum_probs=87.6
Q ss_pred eEEEEECCCC--cEEEEEcCC------CCCeEEEEEc---CC----C-eEEEEe-CCCcEEEEeCCCCceEEEEcCCCCC
Q 003871 526 KISIFSLETF--QTLATFANP------PPIATYFILL---PQ----D-LFAFGF-DDSSILVHCPCTKKTKAKLKGHQNR 588 (790)
Q Consensus 526 ~I~vwd~~~~--~~~~~~~~~------~~~v~~l~~s---~~----g-~l~sgs-~dg~I~iwd~~~~~~~~~l~~h~~~ 588 (790)
+|.+||+.++ +.++++.-+ ...+..+++. |+ + ++..+. ..+.|.++|+.+++..+.+ |..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~--~~~- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT--HPT- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE--CGG-
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc--cCC-
Confidence 6779999999 888887532 2346777777 32 3 444443 4668999999999877665 321
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCC----CCEEEEEeCCcEEEEE
Q 003871 589 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD----QIHLLSIHEGQIDVYE 664 (790)
Q Consensus 589 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~----~~~l~~~~dg~I~iwd 664 (790)
|.|+.....+. +|. .++ +. ..+..|+++|+ ++.|..+.=..-++|.
T Consensus 201 -----~~pd~~~~~~i--~G~---------------~~~-~~-------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~ 250 (381)
T 3q6k_A 201 -----FKAERPTKFDY--GGK---------------EYE-FK-------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYS 250 (381)
T ss_dssp -----GSCCSCEEEEE--TTE---------------EEE-EC-------CCEEEEEECCCCTTSCCEEEEEESSCSEEEE
T ss_pred -----CccccCcceEE--CCE---------------EeE-ec-------cCceEEEecCCcCCCCeEEEEEECCCCcEEE
Confidence 34541111110 111 111 11 36888999998 7788775222223333
Q ss_pred CC-----CC---ceeeeecCCCCCCCeEEEEEe-cCCCEEEEEEcCCeEEEEECCC
Q 003871 665 AP-----TL---NHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 665 ~~-----~~---~~~~~~~~~~h~~~v~~l~~s-~dg~~l~sgs~dg~i~vwd~~~ 711 (790)
+. .. ..++.+-..+....-..++++ .+|..+++--+.+.|..|+..+
T Consensus 251 V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 251 VNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 22 11 122222111001334456775 5777777777889999999876
No 354
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=83.73 E-value=28 Score=36.10 Aligned_cols=148 Identities=11% Similarity=0.075 Sum_probs=78.4
Q ss_pred cEEEEECCCC--ceeeceeeeeeccCCCCCCCCeEEEEEe---CC----CCEEEEE--eCCcEEEEECCCCceeeeec--
Q 003871 609 QLCVWDAVGW--KKLCSKFLHSFQTGLVPETTIVNHIQFH---PD----QIHLLSI--HEGQIDVYEAPTLNHTSQLV-- 675 (790)
Q Consensus 609 ~I~vwd~~~~--~~~~~~~l~~~~~~~~~~~~~v~~i~~s---p~----~~~l~~~--~dg~I~iwd~~~~~~~~~~~-- 675 (790)
.|.+||+.++ +.+....+. .........+..+++. |+ +.++..+ ..+.|.++|+.+++.-+...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p---~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~ 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFP---TRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECC---GGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG
T ss_pred eEEEEECCCCCceeEEEEECC---HHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC
Confidence 5667777776 544333332 1100011468888888 32 3444454 46679999999887655431
Q ss_pred --CCCC------------CCCeEEEEEecC----CCEEEEEEcCC-eEEEEE---CCCCeEEEEeccccccCCCCccccc
Q 003871 676 --PDKM------------DLPITYATYSCD----GKCIYVSCKSG-HVKVFD---TSTLELRCQINLTAYAQPGTISLEL 733 (790)
Q Consensus 676 --~~~h------------~~~v~~l~~s~d----g~~l~sgs~dg-~i~vwd---~~~~~~~~~~~~~~~~~~gh~~~~v 733 (790)
.... ...+..+++||+ ++.|+-....+ .++--. ++.......+. ..|..+..-
T Consensus 201 ~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~-----~~G~kg~~s 275 (381)
T 3q6k_A 201 FKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPE-----LLGNRGKYN 275 (381)
T ss_dssp GSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCE-----EEEECCTTC
T ss_pred CccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceE-----EeeecCCCC
Confidence 1100 236788888887 67776655443 233222 11111100000 001111011
Q ss_pred ceEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 003871 734 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 764 (790)
Q Consensus 734 ~~~~v~~sp~d~~~las~s~Dg~i~iW~~~~ 764 (790)
.....+..+.+|.++++--..+.|..|+..+
T Consensus 276 ~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 276 DAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 2335666543677777777888999999875
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=81.78 E-value=21 Score=38.28 Aligned_cols=113 Identities=10% Similarity=-0.029 Sum_probs=62.3
Q ss_pred CCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeceeeeeeccCCC-----CCCCCeEEEEEeCC---CCEEEE--E
Q 003871 587 NRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV-----PETTIVNHIQFHPD---QIHLLS--I 655 (790)
Q Consensus 587 ~~v~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~-----~~~~~v~~i~~sp~---~~~l~~--~ 655 (790)
.....|+|.|||. .|+++...|.|++++..... .. ..+..++.... ........|+|+|+ ..+|.+ +
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~-~~-~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEI-FK-EPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCB-CS-SCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCe-ee-eeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 3567899999986 45556778999999754321 11 11111211100 00146789999996 334443 3
Q ss_pred e--C----------CcEEEEECCCC----------ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC
Q 003871 656 H--E----------GQIDVYEAPTL----------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 701 (790)
Q Consensus 656 ~--d----------g~I~iwd~~~~----------~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~d 701 (790)
. + ..|.-|.+..+ +.+..+........-..++|.|||.+.++.+..
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 2 1 13444655421 222233211123457899999999877766553
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=77.04 E-value=1.1e+02 Score=34.88 Aligned_cols=181 Identities=13% Similarity=0.030 Sum_probs=92.8
Q ss_pred CeEEEEECCCC--cEEEEEcCCCCCe-EEEEEcCCC-e-----EEEEeCC---CcEEEEeCCC--CceEEEEcCCCCCEE
Q 003871 525 GKISIFSLETF--QTLATFANPPPIA-TYFILLPQD-L-----FAFGFDD---SSILVHCPCT--KKTKAKLKGHQNRIT 590 (790)
Q Consensus 525 g~I~vwd~~~~--~~~~~~~~~~~~v-~~l~~s~~g-~-----l~sgs~d---g~I~iwd~~~--~~~~~~l~~h~~~v~ 590 (790)
..|+.|.+-+. +-...+.+....+ .....++++ . +++.+.+ ..+++.+... ++ ...+......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~-- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSDA-- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTTC--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCcc--
Confidence 47888888664 2334455444443 334556666 3 4443322 3566667553 33 2233222221
Q ss_pred EEEEeCCCCEEEEE----------eCCCcEEEEECCCCceee--ceeeee-eccCCCCCCCCeEEEEEeCCCCEEEE-Ee
Q 003871 591 CLAYSLSLNVLVSS----------GADAQLCVWDAVGWKKLC--SKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLS-IH 656 (790)
Q Consensus 591 ~l~~spdg~~l~s~----------s~dg~I~vwd~~~~~~~~--~~~l~~-~~~~~~~~~~~v~~i~~sp~~~~l~~-~~ 656 (790)
.+..++++.+++.. ...+.|...|+.++.... ....+. +..... ..+..+.+..+. .+++ ..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~-l~~~~~~ 368 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN---EVFNFISTTKDR-VFLATYD 368 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT---EEEEEEEECSSC-EEEEEEE
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC---CeEEEEEEECCE-EEEEEEE
Confidence 12344566555532 246678888987642100 011111 111122 467788888763 4444 35
Q ss_pred CC--cEEEEECCCCc-eeee-ecCCCCCCCeEEEEEecCCCE-EEEEEc---CCeEEEEECCCCeE
Q 003871 657 EG--QIDVYEAPTLN-HTSQ-LVPDKMDLPITYATYSCDGKC-IYVSCK---SGHVKVFDTSTLEL 714 (790)
Q Consensus 657 dg--~I~iwd~~~~~-~~~~-~~~~~h~~~v~~l~~s~dg~~-l~sgs~---dg~i~vwd~~~~~~ 714 (790)
++ .+.++|+.++. .... +.... ...+....+++++.. +++.+. -+.++.+|+. ++.
T Consensus 369 ~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~ 432 (711)
T 4hvt_A 369 NVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HEL 432 (711)
T ss_dssp TTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCE
T ss_pred CCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcE
Confidence 55 47888876664 2333 32211 345666677777654 444443 3778899887 543
No 357
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=76.17 E-value=76 Score=32.79 Aligned_cols=202 Identities=9% Similarity=-0.019 Sum_probs=91.3
Q ss_pred eEEEEeCCCcEEEEeCCC-CceEEEE--cCCCCCEEEEEEeC--CCCEEEEEeCCC----cEEEEECCCCceeeceeeee
Q 003871 558 LFAFGFDDSSILVHCPCT-KKTKAKL--KGHQNRITCLAYSL--SLNVLVSSGADA----QLCVWDAVGWKKLCSKFLHS 628 (790)
Q Consensus 558 ~l~sgs~dg~I~iwd~~~-~~~~~~l--~~h~~~v~~l~~sp--dg~~l~s~s~dg----~I~vwd~~~~~~~~~~~l~~ 628 (790)
.|.+|+..| +.+++... +.....+ ......|.+|++.| ++...+ ++..+ .|...+ ..++. ...+..
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~t--W~~~~~ 98 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGN--WTEATR 98 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSC--CEECSB
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCC--ceECCc
Confidence 777888777 55555432 3222222 12235699999998 444444 44444 343332 22211 011110
Q ss_pred ---eccCCCC----CCCCeEEEEEeC---CCCEEEEEeCCcEEEEECCCCceeeeecC-----------------CCCCC
Q 003871 629 ---FQTGLVP----ETTIVNHIQFHP---DQIHLLSIHEGQIDVYEAPTLNHTSQLVP-----------------DKMDL 681 (790)
Q Consensus 629 ---~~~~~~~----~~~~v~~i~~sp---~~~~l~~~~dg~I~iwd~~~~~~~~~~~~-----------------~~h~~ 681 (790)
+...... ....|.+++++| .+...+.+..+.|...+= .++.-..+.. .....
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCC
Confidence 1100000 002577899987 344444456666655532 2222122110 01134
Q ss_pred CeEEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEecc---ccccCCCC--cccccceEEEEEecCCCCEEEEEeCCC
Q 003871 682 PITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINL---TAYAQPGT--ISLELYPLVIAAHPLEPNRIALGLTNG 755 (790)
Q Consensus 682 ~v~~l~~s~d-g~~l~sgs~dg~i~vwd~~~~~~~~~~~~---~~~~~~gh--~~~~v~~~~v~~sp~d~~~las~s~Dg 755 (790)
.+.++.++|. ...|+.+..++.|+..+ +.|+--..+.. ..+.+..- ....+. +++++|.++..|..++..|
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~--~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPH--CVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEE--EEEECSSSTTEEEEEETTE
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCccee--EEEECCCCCCEEEEEcCCe
Confidence 5789999983 44455555555554443 22322222210 00111000 011244 8888985556777666544
Q ss_pred cEEEEecCCCcccccc
Q 003871 756 RVHVIEPLESEVEWGK 771 (790)
Q Consensus 756 ~i~iW~~~~~~~~w~~ 771 (790)
||....+...|..
T Consensus 255 ---l~~s~D~G~tW~~ 267 (394)
T 3b7f_A 255 ---IYRMDRREGVWKR 267 (394)
T ss_dssp ---EEEEETTTTEEEC
T ss_pred ---EEEeCCCCCcceE
Confidence 3444444445644
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.80 E-value=13 Score=44.09 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=35.9
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccc
Q 003871 680 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 721 (790)
Q Consensus 680 ~~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~ 721 (790)
...+.+++..++..++++-+.|+++++|++.+++++......
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 345777888889999999999999999999999998876543
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=73.81 E-value=35 Score=36.51 Aligned_cols=108 Identities=7% Similarity=-0.082 Sum_probs=61.8
Q ss_pred CeEEEEEeCCCC--EEEEEeCCcEEEEECCCC---ceeeeecC---C----CCCCCeEEEEEecC----CCEEEEEEcC-
Q 003871 639 IVNHIQFHPDQI--HLLSIHEGQIDVYEAPTL---NHTSQLVP---D----KMDLPITYATYSCD----GKCIYVSCKS- 701 (790)
Q Consensus 639 ~v~~i~~sp~~~--~l~~~~dg~I~iwd~~~~---~~~~~~~~---~----~h~~~v~~l~~s~d----g~~l~sgs~d- 701 (790)
..+.|+|.|+|. ++++-..|.|++++.... ..+..+.. . ........++|+|+ +.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 568999999985 777778899999975422 12222210 0 01356889999996 4433333321
Q ss_pred -----------CeEEEEECCCC----------eEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCC
Q 003871 702 -----------GHVKVFDTSTL----------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 755 (790)
Q Consensus 702 -----------g~i~vwd~~~~----------~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg 755 (790)
..|.-|.+..+ +.+..+.. ..++|. .. .++|.| ||.+.++.++.+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~----~~~~H~--g~--~l~fgp-DG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE----LHRKHL--GG--QLLFGP-DGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE----SSSSSC--EE--EEEECT-TSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC----CCCccc--CC--cEeECC-CCcEEEEeCCCC
Confidence 14555665421 12222211 112223 23 899999 898877777644
No 360
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=72.15 E-value=14 Score=31.21 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=55.5
Q ss_pred HHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHH
Q 003871 19 LIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEAL 93 (790)
Q Consensus 19 li~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll 93 (790)
+=..+++.--|.++...+++=-.+..+ ...=.-....|+|++|+..+.+.-.++++.. ..+-..=.=+.
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~ 92 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI------KGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh------HHHHHHHHHHH
Confidence 334556666677887777664333331 2222334567888888888876533332221 11111222234
Q ss_pred hcCChHHHHHHHHhccccccccChhHHHHHHHHh
Q 003871 94 CRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (790)
Q Consensus 94 ~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l 127 (790)
..|++++|+..+++-|.--. .+++-...|..+|
T Consensus 93 ~~~~~~~A~~~~~~al~l~P-~~~~a~~~l~~~l 125 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDP-SNEEAREGVRNCL 125 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHCc-CCHHHHHHHHHhc
Confidence 66888888888886554321 1555555666554
No 361
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=63.83 E-value=1.1e+02 Score=29.83 Aligned_cols=187 Identities=10% Similarity=0.045 Sum_probs=100.2
Q ss_pred eEEEEeCCCcEEEEe---CCCCceEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeceeee--eecc
Q 003871 558 LFAFGFDDSSILVHC---PCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH--SFQT 631 (790)
Q Consensus 558 ~l~sgs~dg~I~iwd---~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~--~~~~ 631 (790)
.++.-+++|.++... +..+.....+. ....|.++.... +..+++..+.+|.++-..+.... ....-+. .+..
T Consensus 37 ~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lke 114 (276)
T 3no0_A 37 GLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLTE 114 (276)
T ss_dssp CEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCCT
T ss_pred EEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecCC
Confidence 555556677665433 22221100132 244566664421 46789999999999998876532 1111111 1222
Q ss_pred CCCCCCCCeEEEEEeCCCCEEE-EEeCCcEEEEECCCCce-------eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe
Q 003871 632 GLVPETTIVNHIQFHPDQIHLL-SIHEGQIDVYEAPTLNH-------TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 703 (790)
Q Consensus 632 ~~~~~~~~v~~i~~sp~~~~l~-~~~dg~I~iwd~~~~~~-------~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~ 703 (790)
+ +.+..+........++ .+..|.++.++...-.. +.-+... ....|..+...+++.+++..+..|.
T Consensus 115 g-----D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~ 188 (276)
T 3no0_A 115 G-----DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGR 188 (276)
T ss_dssp T-----CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSC
T ss_pred C-----CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCc
Confidence 2 3566655554444444 47889888887542111 1112111 2456777666666778899999999
Q ss_pred EEEEECCCCeE-------EEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeCCCcEEE--EecCC
Q 003871 704 VKVFDTSTLEL-------RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV--IEPLE 764 (790)
Q Consensus 704 i~vwd~~~~~~-------~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~Dg~i~i--W~~~~ 764 (790)
++...+..-.. +..+ .. ++.+- .+.... +...++..+.+|.+.. ++...
T Consensus 189 ~kr~~~~e~~~~~R~gkGv~~i------~~---~~~lv--~~~~~~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 189 VKKISHEEIPKTNRGVKGTEVS------GT---KDTLV--DLIPIK-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEGGGSCCCCTTCCCEECC------CS---SSCEE--EEEEES-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEeEHHHcccCCCCCcceEEE------cC---CCcEE--EEEEeC-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 99888653221 1111 11 12222 332222 3446667778888877 77643
No 362
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=63.01 E-value=41 Score=26.58 Aligned_cols=104 Identities=17% Similarity=0.089 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhH
Q 003871 15 HLITLIMKFLEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKY 89 (790)
Q Consensus 15 e~~~li~q~l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~ 89 (790)
....+...++....|.++...+++=-.... + ...=.-....|+|++|..++...-....... .++-..-
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~a 79 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG------KGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH------HHHHHHH
Confidence 345555666666677777777765332222 1 2222234567888888888876522222211 1111111
Q ss_pred HHHHhcCChHHHHHHHHhccccccccChhHHHHHHH
Q 003871 90 CEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAE 125 (790)
Q Consensus 90 lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~ 125 (790)
.=+...|++.+|+..+++-+.-. ..++.....+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 22345688888888888654432 114444444443
No 363
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=62.82 E-value=35 Score=27.90 Aligned_cols=109 Identities=12% Similarity=0.036 Sum_probs=64.0
Q ss_pred chhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhh
Q 003871 12 TYTHLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRK 86 (790)
Q Consensus 12 ~~~e~~~li~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~ 86 (790)
.-..+..+-..++...-|.++...+++=.....+ ...-.-....|+|++|+.++...-....... .+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~--- 89 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI--KGYTR--- 89 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH--HHHHH---
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch--HHHHH---
Confidence 3455666777777777888888888875555442 2222234668999999998877632222211 11111
Q ss_pred hhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHh
Q 003871 87 HKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (790)
Q Consensus 87 q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l 127 (790)
.=.=+...+++.+|+..+++-+.-... +.+....+..++
T Consensus 90 -la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~ 128 (133)
T 2lni_A 90 -KAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCM 128 (133)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHH
T ss_pred -HHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 112234678999999999866543311 444445555444
No 364
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=62.49 E-value=84 Score=37.15 Aligned_cols=40 Identities=28% Similarity=0.206 Sum_probs=33.0
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeceee
Q 003871 587 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 626 (790)
Q Consensus 587 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l 626 (790)
..+.+++..++..++++-+.|+++|+|++.+++......+
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3577888888889999999999999999999876654433
No 365
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=60.12 E-value=1.6e+02 Score=30.26 Aligned_cols=243 Identities=11% Similarity=0.051 Sum_probs=111.7
Q ss_pred cEEEEecCCeEEEEECCC-CcEEEEE--cCCCCCeEEEEEcC--CCeEEEEeCCC----cEEEEeCCCCceEEEEcC---
Q 003871 517 SHLFSASGGKISIFSLET-FQTLATF--ANPPPIATYFILLP--QDLFAFGFDDS----SILVHCPCTKKTKAKLKG--- 584 (790)
Q Consensus 517 ~~l~s~sdg~I~vwd~~~-~~~~~~~--~~~~~~v~~l~~s~--~g~l~sgs~dg----~I~iwd~~~~~~~~~l~~--- 584 (790)
..|+.+...-+.+++... ++.-..+ ......|.++++.| .+.+.+++..| .|...+ +.|+.-..+..
T Consensus 23 g~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 23 VMLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPA 101 (394)
T ss_dssp CEEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCC
T ss_pred CEEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcccc
Confidence 355556633355555432 2211111 12345689999998 34555555454 454432 33433222211
Q ss_pred -----------CCCCEEEEEEeC-C-CCEEEEEeCCCcEEEEECCCCceeeceeeeeecc-CC-----------CCCCCC
Q 003871 585 -----------HQNRITCLAYSL-S-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-GL-----------VPETTI 639 (790)
Q Consensus 585 -----------h~~~v~~l~~sp-d-g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~-~~-----------~~~~~~ 639 (790)
+...|.++++.| + ...+..++..+.|...+-.. +. ...+..... .. .+....
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG-~t--W~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHG-AS--WEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTT-SB--CEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCC-CC--eEECcCccCCccccccccccccCCCCCCc
Confidence 112577899987 2 45566665556555443221 11 111110000 00 000135
Q ss_pred eEEEEEeCC-CCEEEE-EeCCcEEEEECCCCceeeeecCC---CC--------CCCeEEEEEecC-CCEEEEEEcCCeEE
Q 003871 640 VNHIQFHPD-QIHLLS-IHEGQIDVYEAPTLNHTSQLVPD---KM--------DLPITYATYSCD-GKCIYVSCKSGHVK 705 (790)
Q Consensus 640 v~~i~~sp~-~~~l~~-~~dg~I~iwd~~~~~~~~~~~~~---~h--------~~~v~~l~~s~d-g~~l~sgs~dg~i~ 705 (790)
+.+|.++|. ...+.+ ..++.|...+- .++.-..+... .+ ...+.+++++|+ ...|+.+...+ |+
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~ 256 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IY 256 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EE
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EE
Confidence 789999983 333444 34554544432 23222222110 00 135889999986 45666666444 55
Q ss_pred EEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEEEEEeC-----------CCcEEEEecCCCcccccc
Q 003871 706 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-----------NGRVHVIEPLESEVEWGK 771 (790)
Q Consensus 706 vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~-----------Dg~i~iW~~~~~~~~w~~ 771 (790)
..+- .|+.-..+.. .++.+. ... ..+++++|.+...+..+.. ++...||....+...|..
T Consensus 257 ~s~D-~G~tW~~~~~--~l~~~~-~~~--~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~ 327 (394)
T 3b7f_A 257 RMDR-REGVWKRIGD--AMPREV-GDI--GFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQR 327 (394)
T ss_dssp EEET-TTTEEECGGG--GSCTTT-CSC--EEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEE
T ss_pred EeCC-CCCcceECCC--CCCCCC-ccc--eEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceE
Confidence 4442 2332222211 011110 012 2377888744444444432 344677777776667865
No 366
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=56.71 E-value=36 Score=29.47 Aligned_cols=93 Identities=12% Similarity=0.146 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHH
Q 003871 30 KESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSI 104 (790)
Q Consensus 30 ~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~ 104 (790)
.++...+++-.....+ ..-=+-....|+|++|+.++.+.-.++++.. ..+...=.=+...|+.++|+..
T Consensus 14 e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 14 ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP------KAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCchHHHHHH
Confidence 4445555554444432 1111235678999999999987633333322 1222222224467999999999
Q ss_pred HHhccccccccChhHHHHHHHHhcc
Q 003871 105 FRKDLKVFSVSQNRIDCELAELLAL 129 (790)
Q Consensus 105 l~~~l~~~~~~~~~~~~~l~~~l~~ 129 (790)
+++-+.-- ..+++-+..|+.++..
T Consensus 88 ~~~al~~~-p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 88 YRRSVELN-PTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 99766533 2267778888877654
No 367
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=50.88 E-value=64 Score=26.33 Aligned_cols=89 Identities=9% Similarity=-0.020 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHH
Q 003871 16 LITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYC 90 (790)
Q Consensus 16 ~~~li~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~l 90 (790)
+..+-..++..--|.++...+++=-....+ ...=.-....|+|++|+..+.+.-.+++... ..+-..=.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~ 80 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV------RAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH------HHHHHHHH
Confidence 334445566666677777777654433331 2222334567888888888876633332221 11111222
Q ss_pred HHHhcCChHHHHHHHHhccc
Q 003871 91 EALCRHERTEADSIFRKDLK 110 (790)
Q Consensus 91 Ell~~~~~~~al~~l~~~l~ 110 (790)
=+...|++.+|+..+++-+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 23456888888888885543
No 368
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=50.40 E-value=37 Score=37.50 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=42.7
Q ss_pred CeEEEEEeCCCCEEEEEeC--------------CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE
Q 003871 639 IVNHIQFHPDQIHLLSIHE--------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698 (790)
Q Consensus 639 ~v~~i~~sp~~~~l~~~~d--------------g~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 698 (790)
..-.|+|+|.|+++++ .| +.+.+.+..+++..+-+... ....++.++|+||++.|+..
T Consensus 477 ~PDNL~fd~~G~LwI~-eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P-~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWIL-TDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEE-ECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEE-ecCCCcccccccccccceEEEEeCCCCeEEEEEeCC-CCccCcCeeECCCCCEEEEE
Confidence 4567999999986655 22 23667777777776655543 47889999999999988765
No 369
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=49.55 E-value=46 Score=32.66 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=33.5
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhc
Q 003871 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (790)
Q Consensus 51 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~ 128 (790)
-.+..|++++|+..+.++.....+. ....-..-+++...++..+|+..|++.+.--.. +.+-...|+.++.
T Consensus 160 ~~~~~g~~~~A~~~l~~~~~~~p~~------~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~ 230 (287)
T 3qou_A 160 TLIALNRSEDAEAVLXTIPLQDQDT------RYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLH 230 (287)
T ss_dssp HHHHTTCHHHHHHHHTTSCGGGCSH------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCchhhcch------HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHH
Confidence 3455666666666666652222211 112222334455555666666666654432211 4444445555443
No 370
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=49.42 E-value=2.2e+02 Score=28.61 Aligned_cols=150 Identities=10% Similarity=0.025 Sum_probs=83.9
Q ss_pred CC-eEEEEeCCCcEEEEeCCCC-------ceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC--C----Ccee
Q 003871 556 QD-LFAFGFDDSSILVHCPCTK-------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV--G----WKKL 621 (790)
Q Consensus 556 ~g-~l~sgs~dg~I~iwd~~~~-------~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~--~----~~~~ 621 (790)
+. .++..+.+|.|+...+..- .....++. .+.+..+........++..+..|.+..+... . ++..
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 35 8999999999998876432 12222333 3445555555555678888899998888776 3 1111
Q ss_pred eceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCCcEEEEECCCC-------ceeeeecCCCCCCCeEEEEEecCCC
Q 003871 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-------NHTSQLVPDKMDLPITYATYSCDGK 693 (790)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg~I~iwd~~~~-------~~~~~~~~~~h~~~v~~l~~s~dg~ 693 (790)
....+-.+..+ ..|.++...+++.+++. +..|.++.-.+..- +-+..+........+..+....+..
T Consensus 187 ~Gv~~i~L~~~-----d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~ 261 (327)
T 3uc1_A 187 SGVQGMRFNID-----DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDS 261 (327)
T ss_dssp BCEESSCCCTT-----CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTC
T ss_pred CCeeeecCCCC-----CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCc
Confidence 11111112222 46777666555555555 68888888775422 1122222111123455554444455
Q ss_pred EEEEEEcCCeEEEEECCC
Q 003871 694 CIYVSCKSGHVKVFDTST 711 (790)
Q Consensus 694 ~l~sgs~dg~i~vwd~~~ 711 (790)
.++..+.+|.+.-++...
T Consensus 262 ~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 262 ELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEEGGGCEEEEEGGG
T ss_pred cEEEEcCCCeEEEEehhh
Confidence 666677777777776543
No 371
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=48.85 E-value=11 Score=45.97 Aligned_cols=41 Identities=20% Similarity=0.121 Sum_probs=34.3
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEeccc
Q 003871 681 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 721 (790)
Q Consensus 681 ~~v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~~ 721 (790)
..+.+++..++..++++-+.|+++++|++.+++++.+....
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 34556667788899999999999999999999998886643
No 372
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=48.85 E-value=85 Score=24.86 Aligned_cols=103 Identities=13% Similarity=0.186 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHH
Q 003871 17 ITLIMKFLEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCE 91 (790)
Q Consensus 17 ~~li~q~l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lE 91 (790)
..+..-++...-|.++...+++=..... + ...-.-....|++++|+.++........... ...+ ..-.-
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~----~la~~ 86 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWY----NLGNA 86 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH----HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHH----HHHHH
Confidence 3344445555556666666655332222 1 2223344567899999888876622221111 0111 11122
Q ss_pred HHhcCChHHHHHHHHhccccccccChhHHHHHHHH
Q 003871 92 ALCRHERTEADSIFRKDLKVFSVSQNRIDCELAEL 126 (790)
Q Consensus 92 ll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~ 126 (790)
+...++..+|+..+++-+.-. ..+++....|+.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 120 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 120 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345688888888888554322 1144444444443
No 373
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=47.33 E-value=61 Score=35.46 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=44.0
Q ss_pred CCeEEEEEeCCCCEEEEE--e-----------CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 003871 638 TIVNHIQFHPDQIHLLSI--H-----------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 699 (790)
Q Consensus 638 ~~v~~i~~sp~~~~l~~~--~-----------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 699 (790)
.....|+|+++|.+.++. . .+.++.++..+++....+... ....++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P-~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC-CCccccCCEECCCCCEEEEEE
Confidence 356789999999877742 1 125778888778765555332 256799999999999888764
No 374
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=44.16 E-value=3.9e+02 Score=30.11 Aligned_cols=218 Identities=11% Similarity=0.048 Sum_probs=109.1
Q ss_pred CeEEEEECCCCcEEE-EEcCCCC--------CeEEEEEcCCC-eEEEEe----------CCCcEEEEeCCCCc--eEEEE
Q 003871 525 GKISIFSLETFQTLA-TFANPPP--------IATYFILLPQD-LFAFGF----------DDSSILVHCPCTKK--TKAKL 582 (790)
Q Consensus 525 g~I~vwd~~~~~~~~-~~~~~~~--------~v~~l~~s~~g-~l~sgs----------~dg~I~iwd~~~~~--~~~~l 582 (790)
..++++|+.+++.+. .+. +.. ....++|..++ .+++.. ....|+.|.+-+.. -...+
T Consensus 156 ~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~ 234 (711)
T 4hvt_A 156 MFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLF 234 (711)
T ss_dssp EEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEE
T ss_pred eEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEe
Confidence 479999999987763 122 110 01345787444 443311 12368888876642 23344
Q ss_pred cCCCCCE-EEEEEeCCCC-----EEEEEeCC---CcEEEEECCCCceeeceeeeeeccCCCCCCCCeEEEEEeCCCCEEE
Q 003871 583 KGHQNRI-TCLAYSLSLN-----VLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 653 (790)
Q Consensus 583 ~~h~~~v-~~l~~spdg~-----~l~s~s~d---g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~ 653 (790)
.+....+ .+...+++++ .+++.+.+ ..+.+.|..... ..+..+..... ..+..++++.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~------~~~~~~~~~~~~~ 304 (711)
T 4hvt_A 235 EVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKN----LKLQKINMPSD------ATLQGSFKEYVFW 304 (711)
T ss_dssp ECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSS----CEEEECCSCTT------CEEEEEETTEEEE
T ss_pred ccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCC----CcceEeecCCc------ceEeeeECCEEEE
Confidence 4433332 3445566666 24444422 345666665311 01111211111 1123344555555
Q ss_pred EE-----------eCCcEEEEECCCCc-------eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe--EEEEECCCCe
Q 003871 654 SI-----------HEGQIDVYEAPTLN-------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH--VKVFDTSTLE 713 (790)
Q Consensus 654 ~~-----------~dg~I~iwd~~~~~-------~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~--i~vwd~~~~~ 713 (790)
.. ..+.|...|+.++. ....+..+.....+..+.|..+ .++++...++. ++++++.+++
T Consensus 305 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 305 LLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp ECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTE
T ss_pred EECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCc
Confidence 31 25668899987632 2233222233566788888865 56777777764 6777777664
Q ss_pred E-EEE-eccccccCCCCcccccceEEEEEecCCCCEEEEEeC---CCcEEEEecC
Q 003871 714 L-RCQ-INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT---NGRVHVIEPL 763 (790)
Q Consensus 714 ~-~~~-~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~las~s~---Dg~i~iW~~~ 763 (790)
. ... +... + .+.+. ..+.+++.+.++++.+. -+.+..+++.
T Consensus 384 ~~~~~~i~lp-----~--~~~~~--~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 384 WTKPVVLKLP-----Y--QNAIF--GMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp ECCCEEECCC-----S--TTCEE--EEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred eEEEeccCCC-----C--CeEEE--EEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 1 222 2211 1 12233 44555633445555543 2567777765
No 375
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=43.99 E-value=67 Score=36.18 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=29.6
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecc
Q 003871 683 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 720 (790)
Q Consensus 683 v~~l~~s~dg~~l~sgs~dg~i~vwd~~~~~~~~~~~~ 720 (790)
|.++. .+..++++-+.|.++|+|++.+++++.....
T Consensus 224 Is~~~--~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKL--FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEE--ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEec--cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 44443 3578999999999999999999998887765
No 376
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.58 E-value=1.4e+02 Score=24.66 Aligned_cols=108 Identities=12% Similarity=0.048 Sum_probs=61.4
Q ss_pred chhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh--------HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeeh
Q 003871 12 TYTHLITLIMKFLEEENFKESLQALEQESKIFFN--------VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFE 83 (790)
Q Consensus 12 ~~~e~~~li~q~l~~~g~~~s~~~l~~Esg~~~~--------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~ 83 (790)
.-.....+-..++...-|.++...+++=-....+ ...=.-....|+|++|+.++...-....... .+.+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV--KALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH--HHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH--HHHHH
Confidence 3445566666777777788888888775544332 1122235678999999988876522222211 11111
Q ss_pred hhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHH
Q 003871 84 LRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAEL 126 (790)
Q Consensus 84 l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~ 126 (790)
.=.=+...+++.+|+.++++-+... ..+++....+..+
T Consensus 105 ----~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 ----RSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp ----HHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred ----HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 1122345688999999998665433 2144444444444
No 377
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=43.11 E-value=27 Score=27.71 Aligned_cols=71 Identities=10% Similarity=0.052 Sum_probs=41.6
Q ss_pred HHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhcccccc-ccChhHHHHHHHHhc
Q 003871 52 IVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFS-VSQNRIDCELAELLA 128 (790)
Q Consensus 52 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~-~~~~~~~~~l~~~l~ 128 (790)
....|+|++|+..+.+.-.++++.. .+.+.+ =.=+...|++++|+..+++-+.--. ..+.....+|..+|.
T Consensus 17 ~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~l----g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 17 HLKHDNASRALALFEELVETDPDYV--GTYYHL----GKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHH----HHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHH----HHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 5668999999999987633333322 122221 1223467999999999997664321 124444455555443
No 378
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=42.21 E-value=1e+02 Score=30.17 Aligned_cols=83 Identities=11% Similarity=0.057 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhc-HHHHHHHHHH--hcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhh
Q 003871 15 HLITLIMKFLEEEN-FKESLQALEQ--ESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRK 86 (790)
Q Consensus 15 e~~~li~q~l~~~g-~~~s~~~l~~--Esg~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~ 86 (790)
+.++++.+++...| +.++.+.|++ +.+... + +..=.-....|++++|+..+.+ +.+.. +.+
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~---~~~---- 134 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLE---CMA---- 134 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHH---HHH----
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHH---HHH----
Confidence 45566666666665 6666666665 223222 1 1111334566777777777765 11110 111
Q ss_pred hhHHHHHhcCChHHHHHHHHhc
Q 003871 87 HKYCEALCRHERTEADSIFRKD 108 (790)
Q Consensus 87 q~~lEll~~~~~~~al~~l~~~ 108 (790)
..-.=++..|+.++|+..+++-
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 1111244567777777777743
No 379
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=41.39 E-value=1.3e+02 Score=23.99 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=50.9
Q ss_pred HHHHHHHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHH
Q 003871 19 LIMKFLEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEAL 93 (790)
Q Consensus 19 li~q~l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll 93 (790)
+...++...-|.++...+++=..... . ...-.-....|+|++|+.++...-....... .+.+ ..=.=+.
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~----~~~~~~~ 91 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS--KAYG----RMGLALS 91 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH----HHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH--HHHH----HHHHHHH
Confidence 33444445557777666665322222 1 2223344668889888888876522222211 0111 1111234
Q ss_pred hcCChHHHHHHHHhccccccccChhHHHHHHHH
Q 003871 94 CRHERTEADSIFRKDLKVFSVSQNRIDCELAEL 126 (790)
Q Consensus 94 ~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~ 126 (790)
..++..+|+.++++-+.-.. .+......++.+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~ 123 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDP-DNETYKSNLKIA 123 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHH
Confidence 56888888888886544321 144444444443
No 380
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=40.10 E-value=1.3e+02 Score=23.96 Aligned_cols=102 Identities=12% Similarity=0.157 Sum_probs=53.7
Q ss_pred HHHHHHHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHH
Q 003871 19 LIMKFLEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEAL 93 (790)
Q Consensus 19 li~q~l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll 93 (790)
+..-++..--|.++...+++=..... . ...-.-....|++++|+.++........... ...+. .-.=+.
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~----l~~~~~ 80 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYN----LGNAYY 80 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHH----HHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch--HHHHH----HHHHHH
Confidence 33444455556666666654322111 1 2223345578999999999987632222211 01111 111234
Q ss_pred hcCChHHHHHHHHhccccccccChhHHHHHHHHh
Q 003871 94 CRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (790)
Q Consensus 94 ~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l 127 (790)
..|+..+|+.++++-+... ..+...+..++.++
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 113 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 113 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 6799999999998655433 11444444555444
No 381
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=39.99 E-value=94 Score=29.40 Aligned_cols=110 Identities=6% Similarity=0.000 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhH
Q 003871 15 HLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKY 89 (790)
Q Consensus 15 e~~~li~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~ 89 (790)
.++++-.-++..-.|.++...+++=-....+ ...-.-....|++++|+.++...-..+++.. .....+-..=
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~lg 81 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK---AKSADFEYYG 81 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT---CCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh---HHHHHHHHHH
Confidence 3455555566666688887777764332221 2333356778999999988877622222221 2222233333
Q ss_pred HHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhc
Q 003871 90 CEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (790)
Q Consensus 90 lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~ 128 (790)
.-+...|++.+|+..+++-+.--. .+...+..++.+..
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~ 119 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFY 119 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHH
Confidence 334566888899888886655331 14555556655543
No 382
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=39.61 E-value=12 Score=29.50 Aligned_cols=30 Identities=20% Similarity=0.475 Sum_probs=27.4
Q ss_pred chhhhHhhhhhcccchhHHHHhhhhccccc
Q 003871 196 EELIYLIHQFLNEEEFKETLHKLEQETRVF 225 (790)
Q Consensus 196 ~~~~~~~~q~l~~~~~~~~~~~l~~e~~~~ 225 (790)
.++..|+.++|.+.||..++-.+.+|+++.
T Consensus 6 devN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 6 DEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 578899999999999999999999999874
No 383
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=39.14 E-value=1.6e+02 Score=28.46 Aligned_cols=103 Identities=10% Similarity=-0.016 Sum_probs=44.7
Q ss_pred HHHHHHHHHhc--HHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHH
Q 003871 18 TLIMKFLEEEN--FKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYC 90 (790)
Q Consensus 18 ~li~q~l~~~g--~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~l 90 (790)
..+...+...| |.++...+++-.....+ ...-.-....|++++|+..+.......+... ..+-..-.
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~ 167 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH------LPMLYIGL 167 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS------HHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH------HHHHHHHH
Confidence 33344444444 45555555544333321 2222234455666666666655422211111 11111222
Q ss_pred HHHhcCChHHHHHHHHhccccccccChhHHHHHHHHh
Q 003871 91 EALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (790)
Q Consensus 91 Ell~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l 127 (790)
-+...|+..+|+.++++-+.-.. .+...+..++.++
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~ 203 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVA 203 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 23455667777777765443321 1344444444443
No 384
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=38.51 E-value=45 Score=27.53 Aligned_cols=72 Identities=8% Similarity=-0.050 Sum_probs=39.9
Q ss_pred HHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhc
Q 003871 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (790)
Q Consensus 50 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~ 128 (790)
...+..|+|++|+..+.+.-..+++.. .+.|.+ =.=+...|+..+|+..+++-+.--.. +.+-+..|+.++.
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~l----g~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPERE--EAWRSL----GLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHH----HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCH--HHHHHH----HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 456678888888888877633332221 122221 11234568888888888865443211 4455555555443
No 385
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=37.70 E-value=26 Score=27.13 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhcCCc
Q 003871 15 HLITLIMKFLEEENFKESLQALEQESKIF 43 (790)
Q Consensus 15 e~~~li~q~l~~~g~~~s~~~l~~Esg~~ 43 (790)
-+.-||-.||.=.||+-|+..++-|||..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 37789999999999999999999999986
No 386
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=37.64 E-value=76 Score=27.23 Aligned_cols=90 Identities=13% Similarity=0.034 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhH
Q 003871 15 HLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKY 89 (790)
Q Consensus 15 e~~~li~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~ 89 (790)
-+..+-..++..--|.++...+++=.....+ ...=.-....|+|++|+..+...-.++++.. .+.|.+ =
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~l----g 96 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP--RFPFHA----A 96 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHH----H
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--hHHHHH----H
Confidence 3445555666666788887777754333331 1112244678999999988877633322221 022211 1
Q ss_pred HHHHhcCChHHHHHHHHhccc
Q 003871 90 CEALCRHERTEADSIFRKDLK 110 (790)
Q Consensus 90 lEll~~~~~~~al~~l~~~l~ 110 (790)
.=++..|+..+|+..+++-+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 223567899999998886544
No 387
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=37.49 E-value=4.3e+02 Score=28.69 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=13.4
Q ss_pred eEEEEECCCCcEEEEEc
Q 003871 526 KISIFSLETFQTLATFA 542 (790)
Q Consensus 526 ~I~vwd~~~~~~~~~~~ 542 (790)
.+.++|=.+|+.+.++.
T Consensus 230 yL~vfdG~TG~~l~~~~ 246 (591)
T 2zux_A 230 YLTVFQGSTGKELVTAN 246 (591)
T ss_dssp EEEEEETTTCCEEEEEE
T ss_pred EEEEEeCCCCCEEeccc
Confidence 37899988888887764
No 388
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=37.27 E-value=44 Score=29.23 Aligned_cols=72 Identities=10% Similarity=0.006 Sum_probs=46.5
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhcc
Q 003871 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (790)
Q Consensus 51 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~~ 129 (790)
.....|++++|+.++.+.-.++++.. ..+-..=.=+...|++++|+.++++-+.--.. +++-+..|..++..
T Consensus 45 ~~~~~g~~~eA~~~~~~al~~~P~~~------~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 45 DFYNKGRIEEAEVFFRFLCIYDFYNV------DYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 45678999999999988744333322 11111222345679999999999977654322 66777777766654
No 389
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=37.06 E-value=1.3e+02 Score=26.09 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhh
Q 003871 14 THLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHK 88 (790)
Q Consensus 14 ~e~~~li~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~ 88 (790)
+-+..+-..++..--|.++...+++=..+..+ ...=.-....|++++|+..+.+.-.++++.. .+.| ..
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~--~~~~----~l 110 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY--TPVF----HT 110 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC--HHHH----HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc--HHHH----HH
Confidence 34455556666667788888888775555442 1111345678999999999987633333322 1222 22
Q ss_pred HHHHHhcCChHHHHHHHHhccccc
Q 003871 89 YCEALCRHERTEADSIFRKDLKVF 112 (790)
Q Consensus 89 ~lEll~~~~~~~al~~l~~~l~~~ 112 (790)
=.=+...|++++|+..+++-+.--
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 233457899999999999766543
No 390
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=36.92 E-value=46 Score=28.21 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=39.0
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhcc
Q 003871 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (790)
Q Consensus 51 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~~ 129 (790)
.....|+|++|+.++...-..++... .+.+ ..=.=+...|++.+|+.++++-+.-- ..++..+..|+.++..
T Consensus 27 ~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~----~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQALCMLDHYDA--RYFL----GLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH----HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHHhCCccH--HHHH----HHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 35667888888888876633222221 0111 11112346688888888888655432 1255555555555443
No 391
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=36.63 E-value=78 Score=34.92 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=41.7
Q ss_pred CCeEEEEEecCCCEEEEEEcC------------CeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCEE
Q 003871 681 LPITYATYSCDGKCIYVSCKS------------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 748 (790)
Q Consensus 681 ~~v~~l~~s~dg~~l~sgs~d------------g~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l 748 (790)
...-.|+|+|+|+++++-..+ +.+.+.+..++++...+. ++...++. .++|+| |++.|
T Consensus 476 ~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~-------~P~gaE~T--G~~fsp-Dg~tl 545 (592)
T 3zwu_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-------GPIGCEVT--GISFSP-DQKTL 545 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE-------CCTTCEEE--EEEECT-TSSEE
T ss_pred cCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe-------CCCCccCc--CeeECC-CCCEE
Confidence 345779999999977654332 346667777888766554 33345666 999999 78776
Q ss_pred EEE
Q 003871 749 ALG 751 (790)
Q Consensus 749 as~ 751 (790)
...
T Consensus 546 fvn 548 (592)
T 3zwu_A 546 FVG 548 (592)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 392
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=36.62 E-value=49 Score=27.10 Aligned_cols=72 Identities=14% Similarity=0.008 Sum_probs=45.5
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhcc
Q 003871 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (790)
Q Consensus 51 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~~ 129 (790)
.....|+|++|+..+.+.-..++... .++-..=.-+...|++.+|+..+++-+.-- ..+..-+..++.++..
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPEDA------RGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 35789999999999987622222221 223333334557799999999999766543 2255566666665544
No 393
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=36.61 E-value=59 Score=24.32 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=38.5
Q ss_pred HHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHH
Q 003871 52 IVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAEL 126 (790)
Q Consensus 52 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~ 126 (790)
....|+|++|+..+.+.-...+... .+.+ ..=.=+...+++++|+..+++-+.-- ..+.+....|..+
T Consensus 19 ~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~----~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 19 YYKQGDYDEAIEYYQKALELDPNNA--EAWY----NLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHH----HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCCH--HHHH----HHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567999999998876522222211 1111 11222346799999999998655432 1144445555443
No 394
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=36.35 E-value=90 Score=26.98 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHH
Q 003871 16 LITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYC 90 (790)
Q Consensus 16 ~~~li~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~l 90 (790)
+..+-..++..--|.++...+++=-.+..+ ...=.-....|+|++|+..+.+.-.++.+.. .+.| ..=.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~----~lg~ 87 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS--KAWS----RLGL 87 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH----HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHH----HHHH
Confidence 444555566666788888887765443332 2222345678999999999877633332221 1222 2222
Q ss_pred HHHhcCChHHHHHHHHhcccc
Q 003871 91 EALCRHERTEADSIFRKDLKV 111 (790)
Q Consensus 91 Ell~~~~~~~al~~l~~~l~~ 111 (790)
=+...|++.+|+..+++-+.-
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 234679999999999966543
No 395
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=36.27 E-value=99 Score=30.28 Aligned_cols=101 Identities=13% Similarity=0.074 Sum_probs=60.5
Q ss_pred HHHHHHhcHHHHHHHHHHhcCCchh--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHH-hcCC
Q 003871 21 MKFLEEENFKESLQALEQESKIFFN--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEAL-CRHE 97 (790)
Q Consensus 21 ~q~l~~~g~~~s~~~l~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll-~~~~ 97 (790)
.-++..--|.++...|++ +-..+ .....-....|++++|++.+..+...++.. ....+. .-++.+. ..|+
T Consensus 109 ~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~----~~~~l~-~a~~~l~~~~~~ 181 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA----TLTQLA-TAWVSLAAGGEK 181 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHH-HHHHHHHHCTTH
T ss_pred HHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc----HHHHHH-HHHHHHHhCchH
Confidence 344555668888888887 44444 333445667899999999998873333221 111111 1233333 4588
Q ss_pred hHHHHHHHHhccccccccChhHHHHHHHHhcc
Q 003871 98 RTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (790)
Q Consensus 98 ~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~~ 129 (790)
+++|+.++++-+.-. ..++..+..++.+++.
T Consensus 182 ~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 182 LQDAYYIFQEMADKC-SPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 999999999655543 2255666666655544
No 396
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=35.85 E-value=49 Score=27.59 Aligned_cols=72 Identities=15% Similarity=-0.008 Sum_probs=45.8
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhcc
Q 003871 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (790)
Q Consensus 51 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~~ 129 (790)
.....|+|++|+..+.+.-..++... .++-..=.=+...|+..+|+..+++-|.-- ..+.+-+..++.++..
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENA------ILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 36778999999999977522332221 223333334557799999999999766533 2256666666665544
No 397
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=35.67 E-value=1.4e+02 Score=27.17 Aligned_cols=108 Identities=11% Similarity=0.113 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh-HH--------------------HHHHHHhcCCHHHHHHHhccccccc
Q 003871 14 THLITLIMKFLEEENFKESLQALEQESKIFFN-VH--------------------RFGEIVMNGEWEKAEKYLSAFTKLD 72 (790)
Q Consensus 14 ~e~~~li~q~l~~~g~~~s~~~l~~Esg~~~~-~~--------------------~~~~~i~~g~w~~~~~~l~~~~~~~ 72 (790)
.+++..-..++..-.|.++...+++=.....+ .. .=.-....|++++|+..+.+.-.++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34566666777777788888887765544442 11 1223567899999999887763333
Q ss_pred CCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhc
Q 003871 73 DSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (790)
Q Consensus 73 ~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~ 128 (790)
++.. .+.+.+ =.=+...|+..+|+.++++-+.-- ..+.+-+..|..++.
T Consensus 85 p~~~--~~~~~l----g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 85 PNNV--DCLEAC----AEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYY 133 (208)
T ss_dssp TTCH--HHHHHH----HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CCCH--HHHHHH----HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 2221 021211 122346699999999999665432 225666666665543
No 398
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=34.79 E-value=59 Score=25.06 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=34.5
Q ss_pred HHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhcccc
Q 003871 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKV 111 (790)
Q Consensus 50 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~ 111 (790)
......|+|++|+..+...-........ ++.|. .=.=+...|++.+|+..+++-+.-
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~----lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKD-EAYYL----MGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHH-HHHHH----HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHH-HHHHH----HHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4467789999999999876333222210 01111 111234579999999999976553
No 399
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=34.68 E-value=65 Score=25.04 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=35.1
Q ss_pred HHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhcccccccc--ChhHHHHHHHHhc
Q 003871 52 IVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVS--QNRIDCELAELLA 128 (790)
Q Consensus 52 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~--~~~~~~~l~~~l~ 128 (790)
....|+|++|+.++.+.-....... .++-..=.=+...+++++|+.++++-+.-. .. +.+.+..++.++.
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 16 QYDAGNYTESIDLFEKAIQLDPEES------KYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALR 87 (112)
T ss_dssp HHSSCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHT
T ss_pred HHHhhhHHHHHHHHHHHHHhCcCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHH
Confidence 4567888888877766522221111 111111112345677888888887655432 21 3444444544443
No 400
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=34.18 E-value=94 Score=26.13 Aligned_cols=91 Identities=13% Similarity=0.012 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhh
Q 003871 14 THLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHK 88 (790)
Q Consensus 14 ~e~~~li~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~ 88 (790)
.-+..+-..++..--|.++...+++=.....+ ...=.-....|++++|+..+...-.+++... ...|. .
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~----l 92 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP--RFPFH----A 92 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--HHHHH----H
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--HHHHH----H
Confidence 34555666677777789888888764433332 1122235678999999999987633333322 12221 1
Q ss_pred HHHHHhcCChHHHHHHHHhccc
Q 003871 89 YCEALCRHERTEADSIFRKDLK 110 (790)
Q Consensus 89 ~lEll~~~~~~~al~~l~~~l~ 110 (790)
=.=+...|++.+|+..+++-+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 1224567999999999996544
No 401
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=34.12 E-value=70 Score=24.81 Aligned_cols=89 Identities=11% Similarity=0.031 Sum_probs=49.5
Q ss_pred HHHHHHHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHH
Q 003871 19 LIMKFLEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEAL 93 (790)
Q Consensus 19 li~q~l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll 93 (790)
+-.-++...-|.++...+++=..... + ...=.-....|+|++|+..+.+.-......... .++...-.=+.
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~~~l~~~~~ 87 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK----DVWAAKADALR 87 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH----HHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH----HHHHHHHHHHH
Confidence 33344455557777766665322221 1 222233567899999999998763332220001 22222222345
Q ss_pred hc-CChHHHHHHHHhcccc
Q 003871 94 CR-HERTEADSIFRKDLKV 111 (790)
Q Consensus 94 ~~-~~~~~al~~l~~~l~~ 111 (790)
.. |+..+|+.++++-+.-
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGG
T ss_pred HHhCCHHHHHHHHHHHhhc
Confidence 77 8999999999965543
No 402
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=34.06 E-value=57 Score=25.66 Aligned_cols=71 Identities=18% Similarity=0.079 Sum_probs=42.6
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhc
Q 003871 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (790)
Q Consensus 51 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~ 128 (790)
.....|+|++|+..+...-...+... .++...=.-+...+++.+|+..+++-+.-. ..+.+.+..++.++.
T Consensus 13 ~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 13 KALSVGNIDDALQCYSEAIKLDPHNH------VLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcH------HHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 45679999999999987633322221 111111122346799999999999765533 224555555655543
No 403
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=33.86 E-value=1.7e+02 Score=25.07 Aligned_cols=102 Identities=12% Similarity=-0.024 Sum_probs=56.8
Q ss_pred HHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHH
Q 003871 19 LIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEAL 93 (790)
Q Consensus 19 li~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll 93 (790)
+...++..--|.++...+++=-....+ ...-.-....|++++|+.++...-...+... .++...-.-+.
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~a~~~~ 87 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV------KVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHH
Confidence 334445555577777777654433221 2333345678999999999987632222211 12222222344
Q ss_pred hcCChHHHHHHHHhccccccccChhHHHHHHHHh
Q 003871 94 CRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (790)
Q Consensus 94 ~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l 127 (790)
..|+..+|+.++++-+.-. ..+...+..++.++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 120 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVAL 120 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHH
Confidence 6799999999998655433 22444444555444
No 404
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=33.72 E-value=46 Score=27.15 Aligned_cols=72 Identities=14% Similarity=-0.005 Sum_probs=44.5
Q ss_pred HHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhc
Q 003871 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (790)
Q Consensus 50 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~ 128 (790)
......|+|++|+.++.+.-....... .++...=.-+...++..+|+.++++-+.-. ..+...+..++.++.
T Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 24 NECFQKGDYPQAMKHYTEAIKRNPKDA------KLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHTTCSHHHHHHHHHHHTTCTTCH------HHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 345789999999999987632222211 222222233467899999999999766533 225555566665543
No 405
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=33.44 E-value=1.3e+02 Score=32.79 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=41.4
Q ss_pred CCCeEEEEEecCCCEEEEEEc------------CCeEEEEECCCCeEEEEeccccccCCCCcccccceEEEEEecCCCCE
Q 003871 680 DLPITYATYSCDGKCIYVSCK------------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 747 (790)
Q Consensus 680 ~~~v~~l~~s~dg~~l~sgs~------------dg~i~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~ 747 (790)
-.....++|+++|.+.++... .+.|+.++..+|++...+. +.....++ .++|+| |++.
T Consensus 475 fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~-------~P~~aEpn--GiafSP-D~kt 544 (592)
T 4a9v_A 475 FNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-------GPIGCEVT--GISFSP-DQKT 544 (592)
T ss_dssp CCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE-------CCTTCEEE--EEEECT-TSSE
T ss_pred cCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe-------CCCCcccc--CCEECC-CCCE
Confidence 356788999999987774321 2367888888888766553 11122344 999999 7777
Q ss_pred EEEE
Q 003871 748 IALG 751 (790)
Q Consensus 748 las~ 751 (790)
|..+
T Consensus 545 LfV~ 548 (592)
T 4a9v_A 545 LFVG 548 (592)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 406
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=33.18 E-value=57 Score=28.07 Aligned_cols=72 Identities=17% Similarity=0.121 Sum_probs=45.0
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhcc
Q 003871 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (790)
Q Consensus 51 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~~ 129 (790)
.....|++++|+..+......++... .+.+ ..=.=+...|++.+|+..+++-+.--. .++.-+..|+.++..
T Consensus 30 ~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~----~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 30 NQYQSGXYEDAHXVFQALCVLDHYDS--RFFL----GLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH----HHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHcCcccH--HHHH----HHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 45678999999999987733333321 0211 111223467999999999997654332 256666677666544
No 407
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=33.15 E-value=3.5e+02 Score=26.25 Aligned_cols=184 Identities=6% Similarity=-0.007 Sum_probs=98.0
Q ss_pred CcEEEEecCCeEEE---EECCCCcEEEEEcCCCCCeEEEEEcC--CC-eEEEEeCCCcEEEEeCCCC------ceEEEEc
Q 003871 516 GSHLFSASGGKISI---FSLETFQTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCPCTK------KTKAKLK 583 (790)
Q Consensus 516 ~~~l~s~sdg~I~v---wd~~~~~~~~~~~~~~~~v~~l~~s~--~g-~l~sgs~dg~I~iwd~~~~------~~~~~l~ 583 (790)
..+++..+.|.++- |++..+.... +-.....|..+.. + ++ .++..+.+|.++...+..- .....++
T Consensus 36 ~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk 113 (276)
T 3no0_A 36 EGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT 113 (276)
T ss_dssp SCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC
T ss_pred CEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC
Confidence 55666666776554 4433222111 2223556666644 4 35 8889999999998876432 1112233
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce----eeceeeeeeccCCCCCCCCeEEEEEeCCCCEEEE-EeCC
Q 003871 584 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK----LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG 658 (790)
Q Consensus 584 ~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~----~~~~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~dg 658 (790)
. .+.+..+........++..+..|.+..++...-.. ......-.+..+ ..|.++...+++..++. +..|
T Consensus 114 e-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~~~~ll~~T~~G 187 (276)
T 3no0_A 114 E-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNGEPYLLVITAKG 187 (276)
T ss_dssp T-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESSCSEEEEEETTS
T ss_pred C-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCCCCEEEEEeCCC
Confidence 2 24555555555566788889999988887643111 011111113332 35666555555555554 6888
Q ss_pred cEEEEECCCC-------ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE--EECC
Q 003871 659 QIDVYEAPTL-------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV--FDTS 710 (790)
Q Consensus 659 ~I~iwd~~~~-------~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~dg~i~v--wd~~ 710 (790)
.++...+..- +-+..+ . ....+..+....+...++..+.+|.+.. ++..
T Consensus 188 ~~kr~~~~e~~~~~R~gkGv~~i--~-~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 188 RVKKISHEEIPKTNRGVKGTEVS--G-TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp CEEEEEGGGSCCCCTTCCCEECC--C-SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred cEEEeEHHHcccCCCCCcceEEE--c-CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 8888876422 122222 1 1344544443333345556666666666 6554
No 408
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=32.89 E-value=1.6e+02 Score=35.66 Aligned_cols=33 Identities=6% Similarity=0.006 Sum_probs=27.9
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEecCCCcccc
Q 003871 736 LVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 769 (790)
Q Consensus 736 ~~v~~sp~d~~~las~s~Dg~i~iW~~~~~~~~w 769 (790)
.+++..+ +..++++-+.|+++|||++.++++.-
T Consensus 241 vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~ 273 (1139)
T 4fhn_B 241 ISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVE 273 (1139)
T ss_dssp SCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEE
T ss_pred EEeeccC-CccEEEEEeCCCEEEEEECCCCCeEE
Confidence 3666677 78899999999999999999997654
No 409
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=32.70 E-value=57 Score=28.38 Aligned_cols=72 Identities=10% Similarity=-0.051 Sum_probs=45.8
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhcc
Q 003871 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (790)
Q Consensus 51 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~~ 129 (790)
.....|+|++|+.++.+.-.+..... .++-..=.=++..|++.+|+..+++-+.--. .+..-+..|+.++..
T Consensus 20 ~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 20 AAMARKEYSKAIDLYTQALSIAPANP------IYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCcCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 46789999999999987633332221 2222222334567999999999997665432 256666666666544
No 410
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.51 E-value=45 Score=27.94 Aligned_cols=78 Identities=13% Similarity=0.039 Sum_probs=46.6
Q ss_pred HHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHh
Q 003871 48 RFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (790)
Q Consensus 48 ~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l 127 (790)
.=......|+|++|+.++...-....+.. ....++...=.=+...+++.+|+..+++-+.-. ..+...+..++.++
T Consensus 34 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 109 (148)
T 2dba_A 34 EGNELFKCGDYGGALAAYTQALGLDATPQ---DQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQAL 109 (148)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHTSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHcccch---HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHH
Confidence 33456789999999999987633222210 011222222233467899999999999765533 22455555666555
Q ss_pred cc
Q 003871 128 AL 129 (790)
Q Consensus 128 ~~ 129 (790)
..
T Consensus 110 ~~ 111 (148)
T 2dba_A 110 EK 111 (148)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 411
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=32.41 E-value=73 Score=26.42 Aligned_cols=99 Identities=6% Similarity=0.076 Sum_probs=53.2
Q ss_pred HHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccc-cCCcccceeeeh---hhhhhHHHH
Q 003871 22 KFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKL-DDSNHSKKMFFE---LRKHKYCEA 92 (790)
Q Consensus 22 q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~f~---l~~q~~lEl 92 (790)
.+.+.--|.++...+++=-.+..+ ...=.-....|+|++|+..+.+.-.+ ++... ..+. ++-..=.-+
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~a~~~~~lg~~~ 93 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA---DYKLIAKAMSRAGNAF 93 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch---hhHHHHHHHHHHHHHH
Confidence 344555677777777664333332 11112356789999999888665222 22211 1111 111111123
Q ss_pred HhcCChHHHHHHHHhccccccccChhHHHHHHH
Q 003871 93 LCRHERTEADSIFRKDLKVFSVSQNRIDCELAE 125 (790)
Q Consensus 93 l~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~ 125 (790)
...+++.+|+..+++-|... .+++.+..|..
T Consensus 94 ~~~~~~~~A~~~~~kal~~~--~~~~~~~~l~~ 124 (127)
T 4gcn_A 94 QKQNDLSLAVQWFHRSLSEF--RDPELVKKVKE 124 (127)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--CCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC--cCHHHHHHHHH
Confidence 46789999999998776633 25666655544
No 412
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=31.86 E-value=1.6e+02 Score=23.99 Aligned_cols=92 Identities=13% Similarity=-0.054 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhh
Q 003871 13 YTHLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKH 87 (790)
Q Consensus 13 ~~e~~~li~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q 87 (790)
-.....+-..++..--|.++...+++=-....+ ...=.-....|+|++|+..+.....+.+... .+.+.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~---- 82 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFF---- 82 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHH----
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH--HHHHH----
Confidence 344555666667777788888877764333322 2222335568999999998877633332221 12121
Q ss_pred hHHHHHhcCChHHHHHHHHhccc
Q 003871 88 KYCEALCRHERTEADSIFRKDLK 110 (790)
Q Consensus 88 ~~lEll~~~~~~~al~~l~~~l~ 110 (790)
.=.=+...|++.+|+..+++-+.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 22223456899999999986543
No 413
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=31.66 E-value=20 Score=30.72 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHhcHH-HHHHHHHHhcCCchhHHHHHHHHhcCCHHHHHHHhcccccccCCcccc-eee-e-------
Q 003871 13 YTHLITLIMKFLEEENFK-ESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSK-KMF-F------- 82 (790)
Q Consensus 13 ~~e~~~li~q~l~~~g~~-~s~~~l~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~-~~~-f------- 82 (790)
..++...|+..|.+.||= .+...+-++.|+..+ ++.+|++.++.|.+..-.-.+. .++ .
T Consensus 21 ~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~~~~ 89 (130)
T 2k9m_A 21 EQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEEIYP 89 (130)
T ss_dssp HHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhcCch
Confidence 356888999999999993 455555566665543 2334444444442221111100 011 1
Q ss_pred ---hhhhhhHHH-HHhcCCh-HHHHHHHHhccccc
Q 003871 83 ---ELRKHKYCE-ALCRHER-TEADSIFRKDLKVF 112 (790)
Q Consensus 83 ---~l~~q~~lE-ll~~~~~-~~al~~l~~~l~~~ 112 (790)
.|. ..+|| +|.++++ .+|+.++| .|.|.
T Consensus 90 ~a~~ii-~~~l~~~la~~~~~~~~~~~Ir-~L~P~ 122 (130)
T 2k9m_A 90 EEEEIL-KKALRDLKRGKKLKPEIKGKLS-RLRLF 122 (130)
T ss_dssp TTHHHH-HHHHHHHHHSCCCCHHHHHHHH-TCCSC
T ss_pred hHHHHH-HHhHHHHHHcCCHHHHHHHHHH-cCCCC
Confidence 122 24677 7777774 45777776 77775
No 414
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=30.91 E-value=24 Score=31.45 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=35.5
Q ss_pred CCccccCCCchhHHHHHHHHHHHHhcHHHHHHH-----HHHhcCCchh
Q 003871 3 GSKMCIDKDTYTHLITLIMKFLEEENFKESLQA-----LEQESKIFFN 45 (790)
Q Consensus 3 ~~~~~~~~~~~~e~~~li~q~l~~~g~~~s~~~-----l~~Esg~~~~ 45 (790)
.+.+-++|...++-.+-|.+||+..||+..+.+ ++.|||+...
T Consensus 4 ~~~~~~t~~~~~~~a~~i~~~l~~~G~s~~~aAGilGN~~~ESg~nP~ 51 (159)
T 3ct5_A 4 VSNKYLTMSEMKVNAQYILNYLSSNGWTKQAICGMLGNMQSESTINPG 51 (159)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHTTCTT
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc
Confidence 355667777888999999999999999887654 8999998774
No 415
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=30.77 E-value=1.6e+02 Score=29.42 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCHHHHHHHhccc
Q 003871 46 VHRFGEIVMNGEWEKAEKYLSAF 68 (790)
Q Consensus 46 ~~~~~~~i~~g~w~~~~~~l~~~ 68 (790)
..+|++.|.+|++-||-+.+..+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl 39 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI 39 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH
Confidence 88999999999999999777555
No 416
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=30.65 E-value=73 Score=26.17 Aligned_cols=90 Identities=16% Similarity=-0.047 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhH
Q 003871 15 HLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKY 89 (790)
Q Consensus 15 e~~~li~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~ 89 (790)
+...+-..++..--|.++...+++=.....+ ...=.-....|++++|+..+.+.-.+++... .+.+ ..=
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~----~la 92 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHA----ALA 92 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH----HHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHH----HHH
Confidence 4566667777888888888888775554442 2222235568999999999987633333222 1221 222
Q ss_pred HHHHhcCChHHHHHHHHhccc
Q 003871 90 CEALCRHERTEADSIFRKDLK 110 (790)
Q Consensus 90 lEll~~~~~~~al~~l~~~l~ 110 (790)
.=+...|+..+|+..+++-+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 223466899999999996543
No 417
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=30.25 E-value=2.3e+02 Score=24.56 Aligned_cols=33 Identities=12% Similarity=0.035 Sum_probs=15.4
Q ss_pred hcCChHHHHHHHHhccccccccChhHHHHHHHHh
Q 003871 94 CRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (790)
Q Consensus 94 ~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l 127 (790)
..|++++|+..+++-+.-- ..+.+-+..|+.++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 119 SMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAY 151 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHH
Confidence 4466666666666443322 11344444444443
No 418
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=30.13 E-value=1.7e+02 Score=23.15 Aligned_cols=80 Identities=13% Similarity=0.207 Sum_probs=45.3
Q ss_pred HHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCCh
Q 003871 24 LEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHER 98 (790)
Q Consensus 24 l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~ 98 (790)
.....|.++...+++-.....+ ...-.-....|+|++|++++........... .+.+. .-.=+...|+.
T Consensus 46 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~----la~~~~~~~~~ 119 (136)
T 2fo7_A 46 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYN----LGNAYYKQGDY 119 (136)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH--HHHHH----HHHHHHTTTCH
T ss_pred HHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh--HHHHH----HHHHHHHHccH
Confidence 3344577777776653322221 2233345778999999999987632222211 01111 11123467999
Q ss_pred HHHHHHHHhcc
Q 003871 99 TEADSIFRKDL 109 (790)
Q Consensus 99 ~~al~~l~~~l 109 (790)
.+|+.++++-+
T Consensus 120 ~~A~~~~~~~~ 130 (136)
T 2fo7_A 120 DEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998543
No 419
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=29.48 E-value=5.8e+02 Score=27.74 Aligned_cols=132 Identities=13% Similarity=0.003 Sum_probs=77.6
Q ss_pred CeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCC-CCeEEEEEecCCCEEEEEEc--------------CCe
Q 003871 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMD-LPITYATYSCDGKCIYVSCK--------------SGH 703 (790)
Q Consensus 639 ~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~-~~v~~l~~s~dg~~l~sgs~--------------dg~ 703 (790)
.+....-.++|.++.. ....+..+|. .++.+..+....+. ..-..+..-|+|+.|+.+.. +..
T Consensus 208 ~l~~~~g~~nG~l~~g-~G~~i~elD~-~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~ 285 (571)
T 3elq_A 208 YLMGIRETPRGTFTAV-QGQHWYEFDM-MGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDH 285 (571)
T ss_dssp CCEEEEECTTSCEEEE-EBTEEEEECT-TCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCE
T ss_pred eEEEEEecCCCCEEEe-cCcEEEEECC-CCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccE
Confidence 4555555677776554 3345788887 46666655432110 01123556788988876532 446
Q ss_pred EEEEECCCCeEEEEeccccccC-----------------------CCC------------------cccccceEEEEEec
Q 003871 704 VKVFDTSTLELRCQINLTAYAQ-----------------------PGT------------------ISLELYPLVIAAHP 742 (790)
Q Consensus 704 i~vwd~~~~~~~~~~~~~~~~~-----------------------~gh------------------~~~~v~~~~v~~sp 742 (790)
|...| .+|+.+..+.....+. .|. ..+...+.++.+.+
T Consensus 286 I~EVD-~tGeVv~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~ 364 (571)
T 3elq_A 286 ILEVD-KSGRVVDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDA 364 (571)
T ss_dssp EEEEC-TTSCEEEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEET
T ss_pred EEEEC-CCCCEEEEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcC
Confidence 77778 8898888775321110 000 01223355899988
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCccccccCCCC
Q 003871 743 LEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT 775 (790)
Q Consensus 743 ~d~~~las~s~Dg~i~iW~~~~~~~~w~~~~~~ 775 (790)
.++.+|+|+-.- .|...+. +++-.|...++.
T Consensus 365 ~dd~~liSsR~~-~I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 365 KDDSIILSSRHQ-GVVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp TTTEEEEEETTT-EEEEEET-TSCEEEEESCST
T ss_pred CCCEEEEECCcc-EEEEEcC-CCcEEEEECCCC
Confidence 555688877655 6666675 788889876653
No 420
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=29.33 E-value=48 Score=24.20 Aligned_cols=32 Identities=16% Similarity=0.055 Sum_probs=28.7
Q ss_pred chhHHHHHHHHHHHHhcHHHHHHHHHHhcCCc
Q 003871 12 TYTHLITLIMKFLEEENFKESLQALEQESKIF 43 (790)
Q Consensus 12 ~~~e~~~li~q~l~~~g~~~s~~~l~~Esg~~ 43 (790)
+|+.+-|||+--|.-=||.+.|..|-.+-+..
T Consensus 15 ~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~ 46 (66)
T 2xz2_A 15 NREILYRLMISQLMYDGLEKFAMELSMLVKAD 46 (66)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence 69999999999999999999999998887654
No 421
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=29.03 E-value=66 Score=26.16 Aligned_cols=56 Identities=14% Similarity=0.238 Sum_probs=30.4
Q ss_pred HHHhcCCHHHHHHHhccccc-ccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccc
Q 003871 51 EIVMNGEWEKAEKYLSAFTK-LDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLK 110 (790)
Q Consensus 51 ~~i~~g~w~~~~~~l~~~~~-~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~ 110 (790)
.....|+|++|+..+..+-. .+++.....+.|.+ =.-+...|++.+|+..+++-+.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l----g~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWL----GESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHH----HHHHHHhccHHHHHHHHHHHHH
Confidence 35567888888888776622 22222111122221 1223456888888888875544
No 422
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=29.00 E-value=83 Score=24.90 Aligned_cols=71 Identities=17% Similarity=0.159 Sum_probs=41.6
Q ss_pred HHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHh
Q 003871 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (790)
Q Consensus 50 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l 127 (790)
......|+|++|+.++.......+... .++...-.-+...|++.+|+.++++-+.-. ..+...+..++.++
T Consensus 17 ~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 17 NAYYKQGDYDEAIEYYQKALELDPNNA------EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCcH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 346678999999999987632222211 112222223446799999999999655432 21444444555444
No 423
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=28.93 E-value=1.4e+02 Score=23.74 Aligned_cols=110 Identities=7% Similarity=0.060 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccc-cCCcccceeeehhhhhhH
Q 003871 16 LITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKL-DDSNHSKKMFFELRKHKY 89 (790)
Q Consensus 16 ~~~li~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~f~l~~q~~ 89 (790)
...+-..++..--|.++...+++=.....+ ...-.-....|+|++|+.++...-.. +...........++-..=
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 344445555666677777777654332221 22223345689999999998776222 211110000011222222
Q ss_pred HHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHh
Q 003871 90 CEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (790)
Q Consensus 90 lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l 127 (790)
.-+...|++.+|+..+++-+.-. . +++....+..+.
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEH-R-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-C-CHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-C-CHHHHHHHHHHH
Confidence 22446799999999998665532 2 444445555443
No 424
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=28.81 E-value=4.5e+02 Score=26.21 Aligned_cols=239 Identities=10% Similarity=0.016 Sum_probs=119.6
Q ss_pred ceeccCCCceEeeeccccCC---CC-ceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccccc
Q 003871 407 AVCAKSLEKSVNLKLQLINE---PS-ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 482 (790)
Q Consensus 407 ~at~s~d~~i~iwd~~~~~~---~~-~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~~~~~g~~~~ 482 (790)
+++.+.+|.|+--.+..... .+ -.....+ ...+.+..+........|+.-++.|.+.-.....-.. +.
T Consensus 6 ~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~---ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~--~~--- 77 (327)
T 3uc1_A 6 VVTITETGYAKRTKTDLYRSQKRGGKGVQGAGL---KQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPE--AS--- 77 (327)
T ss_dssp EEEEETTSEEEEEEHHHHHHHC--------CCC---CGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCB--CC---
T ss_pred EEEEeCCCEEEEeeHHHhhhcccCCCCcccccc---CCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcC--CC---
Confidence 37777778777654432100 00 0111111 1245566666666666788778878665443221110 00
Q ss_pred ccccccccCCCceeeeecccCCCCCCeEEEEec-----CcEEEEec-CCeEEEEECCCCc-------EEEEEcCCCCCeE
Q 003871 483 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIAT 549 (790)
Q Consensus 483 ~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~s-----~~~l~s~s-dg~I~vwd~~~~~-------~~~~~~~~~~~v~ 549 (790)
| ...|..+...+.-.....|.++... ..+++..+ +|.++--.+.... ..-.+.. .+.+.
T Consensus 78 ------r-~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv 149 (327)
T 3uc1_A 78 ------R-TARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELV 149 (327)
T ss_dssp ------S-SSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEE
T ss_pred ------c-cCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEE
Confidence 0 0112111111111234445544322 45777777 8999988765422 1112332 34454
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCC--C----C-----ceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 003871 550 YFILLPQD-LFAFGFDDSSILVHCPC--T----K-----KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (790)
Q Consensus 550 ~l~~s~~g-~l~sgs~dg~I~iwd~~--~----~-----~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~ 617 (790)
.+...... .++..+..|.+..+... . + ...-.+. ....|.++...+++..++..+..|.++.-.+..
T Consensus 150 ~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 150 GAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 44444444 77778889988877765 2 1 1111122 234577776666667899999999999887654
Q ss_pred Cceeec--eeeee--eccCCCCCCCCeEEEEE-eCCCCEEEEEeCCcEEEEECC
Q 003871 618 WKKLCS--KFLHS--FQTGLVPETTIVNHIQF-HPDQIHLLSIHEGQIDVYEAP 666 (790)
Q Consensus 618 ~~~~~~--~~l~~--~~~~~~~~~~~v~~i~~-sp~~~~l~~~~dg~I~iwd~~ 666 (790)
...... .-+.. +... . +.+..+.. .++...++.+.+|.+.-++..
T Consensus 229 ~~~~~R~~~G~~~~~l~~~-~---d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 229 YPVQGRGGKGVLTVMYDRR-R---GRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp SCBCCTTSCCEESSCCCTT-T---CSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred ccccCcCCCcEEEEEecCC-C---CeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 222110 11111 2111 1 23444443 334445555778887777764
No 425
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=28.78 E-value=1.3e+02 Score=26.35 Aligned_cols=108 Identities=13% Similarity=0.140 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhH
Q 003871 15 HLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKY 89 (790)
Q Consensus 15 e~~~li~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~ 89 (790)
..+.+-..++..-.|.++...+++=.....+ ...=.-.+..|++++|+..+......+++.. .... .-.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~---~~~ 81 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNS---YKSL---IAK 81 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHH---HHHH---HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChH---HHHH---HHH
Confidence 4566777778888888888887764433332 2222335678999999999988733322111 1111 112
Q ss_pred HHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhcc
Q 003871 90 CEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (790)
Q Consensus 90 lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~~ 129 (790)
+.+...++..+|+..+++-+.--.. +++-...|+.++..
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~ 120 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQ 120 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred HHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3333434445577777765543211 55666666665543
No 426
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=28.52 E-value=1e+02 Score=23.91 Aligned_cols=56 Identities=14% Similarity=0.107 Sum_probs=35.5
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccc
Q 003871 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVF 112 (790)
Q Consensus 51 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~ 112 (790)
.....|+|++|+..+.+.-...+... .++-..=.=++..|++.+|+..+++-+.-.
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 13 SLFKQGLYREAVHCYDQLITAQPQNP------VGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 35678999999999877622222221 122222233457799999999999766543
No 427
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=28.44 E-value=2e+02 Score=24.49 Aligned_cols=106 Identities=11% Similarity=-0.034 Sum_probs=57.8
Q ss_pred HHHHHHHH-HHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhH
Q 003871 16 LITLIMKF-LEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKY 89 (790)
Q Consensus 16 ~~~li~q~-l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~ 89 (790)
+...+... +...-|.++...+++=..... + ...-.-....|+|++|+.++.......+... .++...-
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~a 117 (186)
T 3as5_A 44 VALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF------NVRFRLG 117 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH------HHHHHHH
Confidence 33334444 444457777766665332222 1 2233345678999999999987632222211 1111111
Q ss_pred HHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhc
Q 003871 90 CEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (790)
Q Consensus 90 lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~ 128 (790)
.-+...|+..+|+.++++-+... ..+...+..++.+..
T Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 118 VALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYE 155 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHH
Confidence 22346799999999999665543 224555555555443
No 428
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=28.39 E-value=85 Score=25.12 Aligned_cols=72 Identities=10% Similarity=0.005 Sum_probs=43.5
Q ss_pred HHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhc
Q 003871 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (790)
Q Consensus 50 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~ 128 (790)
......|+|++|+.++.+.-....... .++...=.-+...++..+|+.++++-+.-. ..+...+..++.++.
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELNPANA------VYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 345678999999999987632222211 222222223456799999999999766533 224555555555443
No 429
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=28.36 E-value=3.4e+02 Score=24.79 Aligned_cols=100 Identities=17% Similarity=0.085 Sum_probs=46.7
Q ss_pred HHHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCC
Q 003871 23 FLEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHE 97 (790)
Q Consensus 23 ~l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~ 97 (790)
++..--|.++...+++=..... + ...-.-....|++++|+.++...-..+...... .++...-.-+...|+
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~ 156 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERS----RVFENLGLVSLQMKK 156 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHH----HHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccH----HHHHHHHHHHHHcCC
Confidence 3334446666665554322211 1 223334566788888888877652200111101 111111222345677
Q ss_pred hHHHHHHHHhccccccccChhHHHHHHHHh
Q 003871 98 RTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (790)
Q Consensus 98 ~~~al~~l~~~l~~~~~~~~~~~~~l~~~l 127 (790)
.++|+.++++-+.-. ..+...+..|+.++
T Consensus 157 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 185 (252)
T 2ho1_A 157 PAQAKEYFEKSLRLN-RNQPSVALEMADLL 185 (252)
T ss_dssp HHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 888888777554432 11344444444433
No 430
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=28.15 E-value=1.7e+02 Score=26.71 Aligned_cols=110 Identities=12% Similarity=0.029 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHH
Q 003871 16 LITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYC 90 (790)
Q Consensus 16 ~~~li~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~l 90 (790)
...+-..++..--|.++...+++-.....+ ...=.-....|++++|+..+.+.-.++++.. .+.+.+ =..|+
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~l-g~~~~ 84 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL--GGYMVL-SEAYV 84 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH-HHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHH-HHHHH
Confidence 344555566667788888888876666553 2222345678999999999987633332221 122221 11122
Q ss_pred HH--------HhcCChHHHHHHHHhccccccccChhHHHHHHHHhcc
Q 003871 91 EA--------LCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (790)
Q Consensus 91 El--------l~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~~ 129 (790)
++ +..|+..+|+..+++-+.--. .+.+.+..|+.++..
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYAL 130 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 11 122899999999997655321 155666666665543
No 431
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=28.05 E-value=31 Score=30.60 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=35.7
Q ss_pred eeehhhhhhHHHHHhcCChHHHHHHHHhccccc-cccChhHHHHHHHHhc
Q 003871 80 MFFELRKHKYCEALCRHERTEADSIFRKDLKVF-SVSQNRIDCELAELLA 128 (790)
Q Consensus 80 ~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~-~~~~~~~~~~l~~~l~ 128 (790)
+.|=|.=+-||||+..|..++|-.+++ +..+. .....+.+++|+.+..
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~-~f~~~~~~~~~~~i~~L~~i~~ 100 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFE-KFHGDQECYYQDDLRVLSSLTK 100 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHH-HHGGGSCGGGHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHH-HHhHHhHHHHHHHHHHHhcCCC
Confidence 678899999999999999999999999 55543 3334555566654433
No 432
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=26.81 E-value=23 Score=30.73 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=32.3
Q ss_pred eeehhhhhhHHHHHhcCChHHHHHHHHhcccc-ccccChhHHHHHHH
Q 003871 80 MFFELRKHKYCEALCRHERTEADSIFRKDLKV-FSVSQNRIDCELAE 125 (790)
Q Consensus 80 ~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~-~~~~~~~~~~~l~~ 125 (790)
+.|=|+=+-||||+..|..++|-.++. +..+ +... .+.++.|+.
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~-~f~~~~~~~-~~~i~~L~~ 77 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFE-KYRGDHYNK-SEEIKQFES 77 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHH-HHGGGC--C-HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHH-HHhHHHhhH-HHHHHHHhc
Confidence 778899999999999999999999998 4444 3332 444444443
No 433
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=26.31 E-value=2.8e+02 Score=23.11 Aligned_cols=89 Identities=10% Similarity=0.014 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHH
Q 003871 17 ITLIMKFLEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCE 91 (790)
Q Consensus 17 ~~li~q~l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lE 91 (790)
..+-..++...-|.++...+++--.... + ...-.-....|+|++|+.++.+.-....... ..+-..=.=
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~~a~~ 90 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI------KGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH------HHHHHHHHH
Confidence 3344455566667777777765433222 1 2222345668999999988876622222211 111111112
Q ss_pred HHhcCChHHHHHHHHhcccc
Q 003871 92 ALCRHERTEADSIFRKDLKV 111 (790)
Q Consensus 92 ll~~~~~~~al~~l~~~l~~ 111 (790)
+...|++.+|+.++++-+.-
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh
Confidence 34668999999999865543
No 434
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=26.26 E-value=1.9e+02 Score=26.43 Aligned_cols=96 Identities=6% Similarity=-0.001 Sum_probs=45.3
Q ss_pred HHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCCh
Q 003871 24 LEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHER 98 (790)
Q Consensus 24 l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~ 98 (790)
+...-|.++...+++=-.... . ...-.-....|++++|+.++.+.....+... .++...-.-++..|+.
T Consensus 68 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~a~~~~~~~~~ 141 (243)
T 2q7f_A 68 SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG------DLFYMLGTVLVKLEQP 141 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH------HHHHHHHHHHHHTSCH
T ss_pred HHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhccH
Confidence 334445666655554222211 1 2222344567888888887766522222111 1111122223456777
Q ss_pred HHHHHHHHhccccccccChhHHHHHHHH
Q 003871 99 TEADSIFRKDLKVFSVSQNRIDCELAEL 126 (790)
Q Consensus 99 ~~al~~l~~~l~~~~~~~~~~~~~l~~~ 126 (790)
++|+.++++-+.-.. .+...+..++.+
T Consensus 142 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 168 (243)
T 2q7f_A 142 KLALPYLQRAVELNE-NDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 778777775543321 133444444443
No 435
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.00 E-value=87 Score=26.55 Aligned_cols=61 Identities=23% Similarity=0.215 Sum_probs=36.2
Q ss_pred hHHHHHhcCChHHHHHHHHhccc-cccccChhHHHHHHHHhcccccchhhhccCCCCchhHHHHHHHHHHHhhcccc
Q 003871 88 KYCEALCRHERTEADSIFRKDLK-VFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENR 163 (790)
Q Consensus 88 ~~lEll~~~~~~~al~~l~~~l~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~ 163 (790)
..-|++..++..||..+++ +|. |. ..|++-+.......+ ......|..+...|..+....+
T Consensus 13 ll~EY~~~~D~~Ea~~cl~-eL~~p~------f~~e~V~~~i~~alE--------~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLK-ELEVPH------FHHELVYEAIVMVLE--------STGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHH-HHTCGG------GHHHHHHHHHHHHHH--------CCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHHHHHHH-HhCCCc------cHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHHHCCC
Confidence 4567888999999999999 664 42 233333332222211 1122457777777777766544
No 436
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=25.91 E-value=6.5 Score=32.30 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHhcCCHHHHHHHhccc
Q 003871 29 FKESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYLSAF 68 (790)
Q Consensus 29 ~~~s~~~l~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~ 68 (790)
|-..+..+-+|||+..++..+-..| +|+||++.+.+.+.
T Consensus 34 ~Va~~i~vi~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 34 VIDRAIEKISSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHHHHHTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 3344555556899999866666655 49999999999776
No 437
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=25.73 E-value=2.9e+02 Score=25.03 Aligned_cols=105 Identities=14% Similarity=0.072 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHH
Q 003871 16 LITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYC 90 (790)
Q Consensus 16 ~~~li~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~l 90 (790)
...+-..++...-|.++...+++=-....+ ...-.-....|++++|+.++...-....... .++...-.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~ 99 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA------TAYYGAGN 99 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch------HHHHHHHH
Confidence 444555566666677776666654433331 3333455678999999999987633222211 12222222
Q ss_pred HHHhcCChHHHHHHHHhccccccccChhHHHHHHHHh
Q 003871 91 EALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (790)
Q Consensus 91 Ell~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l 127 (790)
=+...|+..+|+.++++-+.-. ..+...+..++.++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 2346799999999999655433 22445555555544
No 438
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=25.71 E-value=2.8e+02 Score=24.53 Aligned_cols=72 Identities=17% Similarity=0.062 Sum_probs=39.7
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhcc
Q 003871 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (790)
Q Consensus 51 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~~ 129 (790)
-....|+|++|+.++...-..+.... ++.|. .- .=+...|++++|+..+++-+.-- ..+++....|..+...
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~--lg--~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNV--KALYK--LG--VANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHH--HH--HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccH--HHHHH--HH--HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHH
Confidence 34567899999888876522222211 12111 11 12346688889988888655432 1145555555555443
No 439
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=25.67 E-value=48 Score=26.65 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=34.2
Q ss_pred ehhhhhhHHHHHhcCC---hHHHHHHHHhccccccccChhHHHHHHHHh
Q 003871 82 FELRKHKYCEALCRHE---RTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (790)
Q Consensus 82 f~l~~q~~lEll~~~~---~~~al~~l~~~l~~~~~~~~~~~~~l~~~l 127 (790)
|-=||...+|||..+. ...||.|+.++|--... ......+|+.+|
T Consensus 51 faPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~R-AKrKreel~~vl 98 (104)
T 4a18_Q 51 FAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRR-AKVKKALLEEAV 98 (104)
T ss_dssp CCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHHH-HHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHcccchhhHHHHHHHHHHhhhHHH-HHHHHHHHHHHH
Confidence 7789999999999999 89999999988765521 344445555554
No 440
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=25.16 E-value=1e+02 Score=25.23 Aligned_cols=73 Identities=8% Similarity=-0.025 Sum_probs=44.5
Q ss_pred HHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhcc
Q 003871 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (790)
Q Consensus 50 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~~ 129 (790)
......|+|++|+.++...-...+... .++-..=.=+...+++.+|+..+++-+.-. ..+..-+..|+.++..
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 89 (137)
T 3q49_B 17 NRLFVGRKYPEAAACYGRAITRNPLVA------VYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 89 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHhhCcCcH------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH
Confidence 346789999999999987623222221 122222222446899999999999766533 2255555666655543
No 441
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=24.61 E-value=2.5e+02 Score=27.00 Aligned_cols=106 Identities=12% Similarity=-0.009 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHH
Q 003871 16 LITLIMKFLEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYC 90 (790)
Q Consensus 16 ~~~li~q~l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~l 90 (790)
++.+...++..--|.++...+++=-.... + ..........|++++|+.++..+-...+... ..+-..=.
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~ 98 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP------VSWFAVGC 98 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST------HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH------HHHHHHHH
Confidence 44555556666667777776555221111 1 3344555677888888888776622222211 11111222
Q ss_pred HHHhcC-ChHHHHHHHHhccccccccChhHHHHHHHHhc
Q 003871 91 EALCRH-ERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (790)
Q Consensus 91 Ell~~~-~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~ 128 (790)
-+...| +.++|+.++++-+.--. .+...+..++.++.
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~ 136 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFA 136 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHH
Confidence 334556 77888888876554331 14444555554443
No 442
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=24.61 E-value=2.6e+02 Score=25.65 Aligned_cols=90 Identities=11% Similarity=-0.052 Sum_probs=52.0
Q ss_pred HHHHHHHH-HHHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhh
Q 003871 15 HLITLIMK-FLEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHK 88 (790)
Q Consensus 15 e~~~li~q-~l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~ 88 (790)
++...+.. ++..--|.++...+++=-.... + ...-.-....|+|++|+.++...-....... .++...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l 111 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA------RVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH------HHHHHH
Confidence 33334444 4444446666666665332222 1 2333346779999999999987632222211 222222
Q ss_pred HHHHHhcCChHHHHHHHHhccc
Q 003871 89 YCEALCRHERTEADSIFRKDLK 110 (790)
Q Consensus 89 ~lEll~~~~~~~al~~l~~~l~ 110 (790)
-.-+...|++.+|+.++++-+.
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
Confidence 3334568999999999998776
No 443
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=24.26 E-value=1.9e+02 Score=26.70 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=23.4
Q ss_pred HHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhcc
Q 003871 52 IVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDL 109 (790)
Q Consensus 52 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l 109 (790)
....|+|++|+..+...-...+... .++-..-.=++..|++.+|+..+++-+
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRAPEDA------RGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455666666666655421111111 111122222334566666666666544
No 444
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=24.09 E-value=2.4e+02 Score=30.29 Aligned_cols=104 Identities=7% Similarity=-0.053 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcHHHHHHHHHH--hcCCchh----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHH
Q 003871 17 ITLIMKFLEEENFKESLQALEQ--ESKIFFN----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYC 90 (790)
Q Consensus 17 ~~li~q~l~~~g~~~s~~~l~~--Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~l 90 (790)
.-||--+.+.--+.++...|++ +.|+..+ -.-+.-....|++++|++++..|....-... . .-|..+ .-
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~-~ty~~L---i~ 183 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-E-PELAAL---LK 183 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-H-HHHHHH---HH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-H-HHHHHH---HH
Confidence 3344444455555555555553 6688876 2334556678999999999988732111100 1 112211 11
Q ss_pred HHHhcCChHHHHHHHHhcccccc-ccChhHHHHHHHH
Q 003871 91 EALCRHERTEADSIFRKDLKVFS-VSQNRIDCELAEL 126 (790)
Q Consensus 91 Ell~~~~~~~al~~l~~~l~~~~-~~~~~~~~~l~~~ 126 (790)
-+...|+.++|+.+|+ ++.-.. ..++..+..|...
T Consensus 184 ~~~~~g~~d~A~~ll~-~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQ-RLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp HHHHTTCHHHHHHHHH-HHHHHTSSBCHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHH-HHHHhCCCcCHHHHHHHHHH
Confidence 2235699999999998 555432 2355666555444
No 445
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=23.97 E-value=2.5e+02 Score=28.56 Aligned_cols=72 Identities=17% Similarity=0.148 Sum_probs=43.1
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHhcc
Q 003871 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (790)
Q Consensus 51 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l~~ 129 (790)
-....|+|++|+.++.+.-.++... .++.|.+- .=+...+++++|+..|++-+.--. .+++....|..++..
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg----~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSN--TKALYRRA----QGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQK 353 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTC--HHHHHHHH----HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchh--HHHHHHHH----HHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 3467899999999987763322222 11222221 123466999999999997654332 255666666666554
No 446
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=23.75 E-value=2.8e+02 Score=22.05 Aligned_cols=93 Identities=10% Similarity=0.115 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhcC----Cch--h--HHHHHHHHhcCCHHHHHHHhcccc-cccCCcccceeeehhhh
Q 003871 16 LITLIMKFLEEENFKESLQALEQESK----IFF--N--VHRFGEIVMNGEWEKAEKYLSAFT-KLDDSNHSKKMFFELRK 86 (790)
Q Consensus 16 ~~~li~q~l~~~g~~~s~~~l~~Esg----~~~--~--~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~f~l~~ 86 (790)
...+-..++....|.++...+++=-. -.. + ...=......|+|++|+..+..+- ..+++.....+.|.+-
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la- 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG- 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH-
Confidence 34455666777778888877775322 111 1 222234677899999999998763 2233321011222221
Q ss_pred hhHHHHHhcCChHHHHHHHHhccccc
Q 003871 87 HKYCEALCRHERTEADSIFRKDLKVF 112 (790)
Q Consensus 87 q~~lEll~~~~~~~al~~l~~~l~~~ 112 (790)
.=+...|+.++|+..+++-+.-.
T Consensus 84 ---~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 ---LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp ---HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ---HHHHHcCCHHHHHHHHHHHHHHC
Confidence 11236799999999999665433
No 447
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=23.65 E-value=1.1e+02 Score=28.98 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhcCCchhHHHHHHHHhcCC---H---------HHHHHHhccc-ccccCCcccceeee
Q 003871 16 LITLIMKFLEEENFKESLQALEQESKIFFNVHRFGEIVMNGE---W---------EKAEKYLSAF-TKLDDSNHSKKMFF 82 (790)
Q Consensus 16 ~~~li~q~l~~~g~~~s~~~l~~Esg~~~~~~~~~~~i~~g~---w---------~~~~~~l~~~-~~~~~~~~~~~~~f 82 (790)
+|+-++++|++.|+. +=|-+-+|-.-++..+++.+-.|. + ..+-.+|..+ ..+++-. +-+
T Consensus 40 iv~~~i~~i~~~gl~---eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dvh~va~lLK~fLreLPePL----l~~ 112 (229)
T 3iug_A 40 VLQSCTAFIERYGIV---DGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPL----LTY 112 (229)
T ss_dssp HHHHHHHHHHHHCCS---TTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCHHHHHHHHHHHHHHCSSCT----TCT
T ss_pred HHHHHHHHHHHcCCC---CCCeecCCcHHHHHHHHHHHhcCCCCCccccccccchHHHHHHHHHHHHHCCCCC----cCH
Confidence 677788999998861 344444555557999999998873 2 2233333332 2233322 223
Q ss_pred hhhhhhHHHHHhcCChHHHHHHHHhccccccccChhHHHHHHHHh
Q 003871 83 ELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (790)
Q Consensus 83 ~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l 127 (790)
.+| +.|++.....+..+.+..++.-+.-|...+...++.|...|
T Consensus 113 ~ly-~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L 156 (229)
T 3iug_A 113 QLY-EKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHL 156 (229)
T ss_dssp TTH-HHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 444 45777777777676666666555555322444444444444
No 448
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=23.36 E-value=55 Score=24.67 Aligned_cols=19 Identities=16% Similarity=0.387 Sum_probs=15.8
Q ss_pred CCCchhHHHHHHHHHHHHh
Q 003871 9 DKDTYTHLITLIMKFLEEE 27 (790)
Q Consensus 9 ~~~~~~e~~~li~q~l~~~ 27 (790)
|..++++++..|+|||++.
T Consensus 3 ~~~~~K~la~sIi~FL~~~ 21 (74)
T 2lxb_A 3 DSASKEEIAALIVNYFSSI 21 (74)
T ss_dssp CSCCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHh
Confidence 4556899999999999874
No 449
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=23.25 E-value=5.4e+02 Score=25.26 Aligned_cols=272 Identities=8% Similarity=0.019 Sum_probs=0.0
Q ss_pred CCCCCCcccceeccCCCceEeeeccccCCCC----ceeeeeccCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 003871 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPS----ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 473 (790)
Q Consensus 398 ~dg~~la~~~at~s~d~~i~iwd~~~~~~~~----~~~~~~l~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~vw~~~~~ 473 (790)
|+...+ ++.+.+|.|+--.+.+..... -...+.+.. .+.+..+........++..+..|.+.-.....-
T Consensus 1 ~~e~~~----v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke---~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~el 73 (307)
T 1zi0_A 1 TQEDVV----VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE---EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 73 (307)
T ss_dssp CCCEEE----EEEETTSEEEEEECC-----------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGS
T ss_pred CCCcEE----EEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC---CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHC
Q ss_pred CccccccccccccccccCCCceeeeecccCCCCCCeEEEEe----c-CcEEEEec-CCeEEEEECC-------CCcEEEE
Q 003871 474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL----R-GSHLFSAS-GGKISIFSLE-------TFQTLAT 540 (790)
Q Consensus 474 ~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~V~~l~~----s-~~~l~s~s-dg~I~vwd~~-------~~~~~~~ 540 (790)
.. .=....|..+...+.-.....|.++.. . +.+++..+ .|.++-..+. .|...-.
T Consensus 74 p~------------~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~ 141 (307)
T 1zi0_A 74 PE------------ATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIK 141 (307)
T ss_dssp CC------------CCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSC
T ss_pred cC------------CCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEE
Q ss_pred EcCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC---------CCceEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCcE
Q 003871 541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---------TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 610 (790)
Q Consensus 541 ~~~~~~~v~~l~~s~~g-~l~sgs~dg~I~iwd~~---------~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~I 610 (790)
+... +.+..+....+. .++..+.+|.+..++.. .|...-.+. ....|.++...+++..+++.+..|.+
T Consensus 142 l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~ 219 (307)
T 1zi0_A 142 LVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYG 219 (307)
T ss_dssp CCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEE
T ss_pred ECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCce
Q ss_pred EEEECCCCceeec----eeeeeeccCCCCCCCCeEEEEEeCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEE
Q 003871 611 CVWDAVGWKKLCS----KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYA 686 (790)
Q Consensus 611 ~vwd~~~~~~~~~----~~l~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~l 686 (790)
+-.++........ .....+..... .-+......++...++.+.+|.+.-+++..-...... ...+.-+
T Consensus 220 Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~---~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i~~~~R~-----~~Gv~~i 291 (307)
T 1zi0_A 220 KRTAVAEYPTKSRATKGVISIKVTERNG---LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRN-----TQGVILI 291 (307)
T ss_dssp EEECGGGSCCCCTTSCCEESSCCCTTTC---SEEEEEEECTTCEEEEEESSCCEEEEEGGGSCBCCSS-----CCCEECS
T ss_pred EEEEHHHhccCCCCCCCEEeeEecCCCC---eEEEEEEeCCCceEEEEcCCCcEEEEecccccccCcC-----CCCeEeE
Q ss_pred EEecCCCEEEEE
Q 003871 687 TYSCDGKCIYVS 698 (790)
Q Consensus 687 ~~s~dg~~l~sg 698 (790)
...++.+.+...
T Consensus 292 ~l~~~~~v~~~~ 303 (307)
T 1zi0_A 292 RTAEDENVVGLQ 303 (307)
T ss_dssp CCCTTCCEEEEE
T ss_pred EcCCCCEEEEEE
No 450
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=22.60 E-value=58 Score=26.35 Aligned_cols=56 Identities=14% Similarity=0.007 Sum_probs=36.3
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccc
Q 003871 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVF 112 (790)
Q Consensus 51 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~ 112 (790)
-....|++++|+..+.+.-...++.. .+.+ ..=.=+...|+..+|+..+++-+...
T Consensus 36 ~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~----~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 36 TFRTLGEYRKAEAVLANGVKQFPNHQ--ALRV----FYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH----HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCch--HHHH----HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 35678999999999987633322221 1222 22233456799999999999776644
No 451
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=22.36 E-value=87 Score=28.67 Aligned_cols=79 Identities=13% Similarity=0.085 Sum_probs=47.6
Q ss_pred HHHHHHhcCCHHHHHHHhcccccccCCcccceeeeh------------hhhhhHHHHHhcCChHHHHHHHHhcccccccc
Q 003871 48 RFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFE------------LRKHKYCEALCRHERTEADSIFRKDLKVFSVS 115 (790)
Q Consensus 48 ~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~------------l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~ 115 (790)
+=...+..|+|++|+..+.+.-..++... .+.|. +..+.=.-+...|++.+|+..+++-+.--..
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 86 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRT--EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN- 86 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHH--HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCh--HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-
Confidence 34456789999999999987622222211 12222 0111223345789999999999976654322
Q ss_pred ChhHHHHHHHHhcc
Q 003871 116 QNRIDCELAELLAL 129 (790)
Q Consensus 116 ~~~~~~~l~~~l~~ 129 (790)
+.+-+..|+.++..
T Consensus 87 ~~~~~~~lg~~~~~ 100 (208)
T 3urz_A 87 NVDCLEACAEMQVC 100 (208)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 56666677766544
No 452
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=22.05 E-value=1.3e+02 Score=31.71 Aligned_cols=96 Identities=11% Similarity=-0.023 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHhcCCch--------hHHHH-----HHHHhcCCHHHHHHHhccc-----ccccCCc
Q 003871 14 THLITLIMKFLEEENFKESLQALEQESKIFF--------NVHRF-----GEIVMNGEWEKAEKYLSAF-----TKLDDSN 75 (790)
Q Consensus 14 ~e~~~li~q~l~~~g~~~s~~~l~~Esg~~~--------~~~~~-----~~~i~~g~w~~~~~~l~~~-----~~~~~~~ 75 (790)
+++++.|.++-.+--|.++....++--.+.- .+... .-+...|+|++|+.+..+. ..++++-
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 4677777777666677777776665543322 12222 2345689999999988654 1122221
Q ss_pred ccceeeehhhhhhHHHHHhcCChHHHHHHHHhccccc
Q 003871 76 HSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVF 112 (790)
Q Consensus 76 ~~~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~~~ 112 (790)
.. .-..+..-- .=+..+|++++|+.++++-+..+
T Consensus 368 p~--~a~~l~nLa-~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 368 PV--RGVQVMKVG-KLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HH--HHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hH--HHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHH
Confidence 10 111111111 11345789999999999887765
No 453
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=21.06 E-value=2.4e+02 Score=25.88 Aligned_cols=103 Identities=13% Similarity=0.029 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHh-cHHHHHHHHHHhcCCchhHHHHHHHHhcCCHHHHHHHhcccccccCCcccceeeehhhhhhHHHHH
Q 003871 15 HLITLIMKFLEEE-NFKESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEAL 93 (790)
Q Consensus 15 e~~~li~q~l~~~-g~~~s~~~l~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~f~l~~q~~lEll 93 (790)
++...+.+.+..+ -|.++...+++=..+..+.. .....|++++|+..+.......+... .++...=.-++
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~ 150 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD---ILTKLRNAEKELKKAEAEAYVNPEKA------EEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHHHCCHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhH---HHHHHhHHHHHHHHHHHHHHcCcchH------HHHHHHHHHHH
Confidence 3444444444444 46666666665443333322 23445889999998877632221211 22222333345
Q ss_pred hcCChHHHHHHHHhccccccccChhHHHHHHHHh
Q 003871 94 CRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (790)
Q Consensus 94 ~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~~l 127 (790)
..|++.+|+.++++-+.-... +...+..++.++
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 183 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAAL 183 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHH
Confidence 779999999999976654322 455555565544
No 454
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=21.06 E-value=5.6e+02 Score=24.63 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=9.5
Q ss_pred HhcCChHHHHHHHHhcc
Q 003871 93 LCRHERTEADSIFRKDL 109 (790)
Q Consensus 93 l~~~~~~~al~~l~~~l 109 (790)
+..|+..+|+..+++-+
T Consensus 165 ~~~~~~~~A~~~~~~~~ 181 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAAS 181 (359)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 34566666666666443
No 455
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.69 E-value=1.7e+02 Score=30.90 Aligned_cols=96 Identities=13% Similarity=0.154 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHH-HHhcHHHHHHHHHH---hcCCchh--------HHHHHHHHhcCCHHHHHHHhcccc--cccCCc-cc
Q 003871 13 YTHLITLIMKFL-EEENFKESLQALEQ---ESKIFFN--------VHRFGEIVMNGEWEKAEKYLSAFT--KLDDSN-HS 77 (790)
Q Consensus 13 ~~e~~~li~q~l-~~~g~~~s~~~l~~---Esg~~~~--------~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~-~~ 77 (790)
|..+.+.+.... .+..|.+++..|++ |+.-..+ ...+|-++..|||..|..++.+.. ...... ..
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 334444444444 44569999877665 8865542 788899999999999999998752 111111 11
Q ss_pred ceeeehhhhhhHHHHHhcCChHHHHHHHHhccc
Q 003871 78 KKMFFELRKHKYCEALCRHERTEADSIFRKDLK 110 (790)
Q Consensus 78 ~~~~f~l~~q~~lEll~~~~~~~al~~l~~~l~ 110 (790)
.+..|..+. -.=....+++.+|-..+.+-+.
T Consensus 216 lk~~~~~~~--~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 216 LKLEYYNLL--VKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHH--HHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHh
Confidence 112222222 2223467888888888885543
No 456
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=20.22 E-value=1.3e+02 Score=33.88 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=29.9
Q ss_pred CCeEEEEecCcEEEEec-CCeEEEEECCCCcEEEEEcC
Q 003871 507 DSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFAN 543 (790)
Q Consensus 507 ~~V~~l~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~ 543 (790)
..|.++.+...++++-+ |.++|+|++.+++++.+..-
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45666666677888877 99999999999999887754
Done!