Query 003872
Match_columns 790
No_of_seqs 651 out of 4112
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 13:31:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.6E-73 5.6E-78 650.6 65.0 621 81-779 48-669 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 7.9E-72 1.7E-76 638.4 66.2 589 62-767 136-726 (857)
3 PLN03218 maturation of RBCL 1; 100.0 8.7E-69 1.9E-73 597.7 69.9 524 116-768 367-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.3E-67 2.9E-72 588.3 66.4 536 65-733 355-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 9.8E-62 2.1E-66 541.7 50.8 513 82-768 85-611 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.8E-59 6E-64 522.1 53.8 477 196-765 83-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.9E-32 1.1E-36 320.0 74.6 599 54-761 268-866 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.6E-31 1.4E-35 310.4 76.3 590 61-759 309-898 (899)
9 PRK11447 cellulose synthase su 100.0 4.8E-23 1E-27 242.2 73.6 610 60-766 41-746 (1157)
10 PRK11447 cellulose synthase su 99.9 2.1E-21 4.6E-26 228.4 68.0 610 87-761 31-700 (1157)
11 KOG2002 TPR-containing nuclear 99.9 1.5E-19 3.3E-24 188.0 55.2 572 63-773 146-757 (1018)
12 PRK09782 bacteriophage N4 rece 99.9 1.5E-18 3.3E-23 194.3 64.9 589 51-768 48-711 (987)
13 PRK09782 bacteriophage N4 rece 99.9 5.4E-17 1.2E-21 182.0 65.0 549 95-769 55-678 (987)
14 KOG2002 TPR-containing nuclear 99.9 2.8E-17 6.1E-22 171.4 57.0 587 57-764 174-801 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 1E-18 2.2E-23 172.5 38.6 437 203-768 51-490 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 1.8E-18 4E-23 170.7 38.1 471 157-769 51-534 (966)
17 PRK11788 tetratricopeptide rep 99.9 1.1E-18 2.3E-23 183.5 37.0 304 351-768 45-354 (389)
18 PRK11788 tetratricopeptide rep 99.9 1.4E-18 3.1E-23 182.5 35.2 308 317-748 46-363 (389)
19 TIGR00990 3a0801s09 mitochondr 99.9 1.9E-16 4.1E-21 175.1 52.2 432 202-761 129-571 (615)
20 TIGR00990 3a0801s09 mitochondr 99.8 3.7E-16 7.9E-21 172.8 51.3 430 157-726 130-571 (615)
21 PRK15174 Vi polysaccharide exp 99.8 4.4E-16 9.5E-21 171.2 47.6 338 83-441 41-382 (656)
22 PRK15174 Vi polysaccharide exp 99.8 2.1E-15 4.5E-20 165.9 48.3 334 238-691 44-382 (656)
23 KOG4422 Uncharacterized conser 99.8 1.3E-14 2.9E-19 137.5 45.2 324 120-476 117-463 (625)
24 PRK10049 pgaA outer membrane p 99.8 3.6E-15 7.9E-20 167.8 49.8 372 81-474 12-421 (765)
25 PRK10049 pgaA outer membrane p 99.8 6.3E-15 1.4E-19 165.9 51.4 427 117-691 13-457 (765)
26 KOG4422 Uncharacterized conser 99.8 2.3E-14 5E-19 135.9 43.8 340 85-457 117-479 (625)
27 PRK14574 hmsH outer membrane p 99.8 4.9E-14 1.1E-18 155.1 52.6 235 358-691 268-514 (822)
28 PRK14574 hmsH outer membrane p 99.8 1.2E-13 2.5E-18 152.1 54.7 436 89-655 39-513 (822)
29 KOG2003 TPR repeat-containing 99.8 6.8E-15 1.5E-19 140.3 36.7 498 118-759 200-720 (840)
30 KOG2076 RNA polymerase III tra 99.8 1.7E-12 3.6E-17 135.5 55.5 370 89-474 144-554 (895)
31 KOG0495 HAT repeat protein [RN 99.7 2.5E-11 5.4E-16 121.8 57.8 463 206-761 412-880 (913)
32 KOG2076 RNA polymerase III tra 99.7 1.1E-11 2.4E-16 129.4 57.8 615 60-767 152-853 (895)
33 KOG1915 Cell cycle control pro 99.7 4E-11 8.8E-16 115.8 54.8 470 83-689 72-584 (677)
34 KOG4318 Bicoid mRNA stability 99.7 6.3E-14 1.4E-18 144.9 37.8 589 76-776 17-639 (1088)
35 KOG1915 Cell cycle control pro 99.7 1.3E-11 2.7E-16 119.2 48.9 443 153-726 72-536 (677)
36 KOG0495 HAT repeat protein [RN 99.7 9E-11 2E-15 117.9 56.6 573 64-761 268-846 (913)
37 KOG2003 TPR repeat-containing 99.7 1.7E-13 3.7E-18 130.8 33.3 173 596-778 529-702 (840)
38 KOG4318 Bicoid mRNA stability 99.6 4E-12 8.7E-17 131.8 35.5 274 105-426 11-286 (1088)
39 KOG2047 mRNA splicing factor [ 99.6 4.2E-09 9.2E-14 106.1 53.6 560 85-747 103-709 (835)
40 KOG1155 Anaphase-promoting com 99.5 1.3E-09 2.9E-14 105.4 40.1 367 266-760 159-535 (559)
41 PF13429 TPR_15: Tetratricopep 99.5 1.1E-13 2.3E-18 137.3 11.9 263 89-369 13-276 (280)
42 KOG2047 mRNA splicing factor [ 99.5 3.5E-08 7.6E-13 99.6 50.1 508 120-761 103-651 (835)
43 KOG3785 Uncharacterized conser 99.5 4E-09 8.7E-14 98.4 40.3 488 91-747 29-536 (557)
44 COG2956 Predicted N-acetylgluc 99.5 6E-11 1.3E-15 109.2 27.7 246 42-300 30-278 (389)
45 PRK10747 putative protoheme IX 99.5 2.7E-10 5.9E-15 118.2 36.2 87 352-441 129-217 (398)
46 KOG1173 Anaphase-promoting com 99.5 1.8E-09 3.8E-14 107.4 39.2 278 375-770 243-525 (611)
47 KOG1155 Anaphase-promoting com 99.5 8.7E-09 1.9E-13 99.9 42.6 329 233-689 161-494 (559)
48 TIGR00540 hemY_coli hemY prote 99.5 2.5E-10 5.4E-15 119.3 35.4 135 625-759 262-397 (409)
49 PRK10747 putative protoheme IX 99.5 2.8E-10 6E-15 118.2 34.2 220 209-438 162-388 (398)
50 KOG0547 Translocase of outer m 99.5 5.4E-10 1.2E-14 108.7 32.4 165 587-759 390-564 (606)
51 PF13429 TPR_15: Tetratricopep 99.5 5.6E-13 1.2E-17 132.1 12.7 157 598-758 117-274 (280)
52 TIGR00540 hemY_coli hemY prote 99.4 5.9E-10 1.3E-14 116.5 34.5 287 132-439 97-398 (409)
53 COG2956 Predicted N-acetylgluc 99.4 1E-09 2.2E-14 101.3 30.8 290 97-440 48-347 (389)
54 COG3071 HemY Uncharacterized e 99.4 1.9E-09 4.2E-14 102.9 33.3 287 249-655 97-390 (400)
55 COG3071 HemY Uncharacterized e 99.4 1.9E-09 4.1E-14 102.9 32.6 126 626-759 263-388 (400)
56 KOG3785 Uncharacterized conser 99.4 4.7E-09 1E-13 97.9 34.2 455 126-736 29-498 (557)
57 KOG1173 Anaphase-promoting com 99.4 1.2E-08 2.6E-13 101.6 38.7 287 337-742 240-532 (611)
58 KOG1126 DNA-binding cell divis 99.4 1.3E-10 2.9E-15 117.8 25.6 288 134-443 334-623 (638)
59 KOG0547 Translocase of outer m 99.4 4.6E-09 1E-13 102.4 33.8 420 160-725 121-565 (606)
60 KOG1126 DNA-binding cell divis 99.4 2.8E-10 6.1E-15 115.5 26.2 158 594-760 458-619 (638)
61 KOG1156 N-terminal acetyltrans 99.3 7.1E-07 1.5E-11 90.9 42.5 190 211-405 52-248 (700)
62 PF13041 PPR_2: PPR repeat fam 99.3 1.9E-11 4E-16 83.8 6.8 50 695-744 1-50 (50)
63 KOG1156 N-terminal acetyltrans 99.3 2.9E-06 6.2E-11 86.6 46.1 478 122-724 11-509 (700)
64 KOG4162 Predicted calmodulin-b 99.2 4.5E-06 9.7E-11 87.0 46.3 436 232-760 319-782 (799)
65 PRK12370 invasion protein regu 99.2 8.8E-09 1.9E-13 112.0 28.5 165 589-761 370-535 (553)
66 TIGR02521 type_IV_pilW type IV 99.2 9.8E-09 2.1E-13 99.4 26.3 167 590-760 64-231 (234)
67 KOG0985 Vesicle coat protein c 99.2 7.6E-06 1.6E-10 87.3 47.6 159 589-778 1102-1260(1666)
68 PF12569 NARP1: NMDA receptor- 99.2 1.4E-06 3.1E-11 91.3 42.7 260 207-477 11-293 (517)
69 KOG4162 Predicted calmodulin-b 99.2 9.5E-07 2.1E-11 91.8 40.2 128 594-725 653-782 (799)
70 TIGR02521 type_IV_pilW type IV 99.2 1.3E-08 2.8E-13 98.6 26.4 197 121-332 33-229 (234)
71 KOG3617 WD40 and TPR repeat-co 99.2 6E-06 1.3E-10 86.2 45.7 319 94-474 738-1108(1416)
72 PF13041 PPR_2: PPR repeat fam 99.2 5.4E-11 1.2E-15 81.5 6.4 49 624-672 1-49 (50)
73 PRK12370 invasion protein regu 99.2 2.1E-08 4.5E-13 109.1 28.6 251 356-726 276-535 (553)
74 KOG1129 TPR repeat-containing 99.2 5.6E-09 1.2E-13 96.4 19.5 233 309-655 226-458 (478)
75 KOG1129 TPR repeat-containing 99.1 1.7E-08 3.7E-13 93.3 22.0 231 239-475 226-458 (478)
76 KOG2376 Signal recognition par 99.1 2.3E-06 4.9E-11 86.3 38.3 129 591-724 376-518 (652)
77 KOG3616 Selective LIM binding 99.1 1.8E-06 4E-11 88.6 36.1 137 593-757 826-962 (1636)
78 KOG1840 Kinesin light chain [C 99.1 1.1E-07 2.4E-12 98.2 27.6 141 629-769 328-490 (508)
79 COG3063 PilF Tfp pilus assembl 99.1 2E-07 4.4E-12 82.5 25.0 209 121-346 37-245 (250)
80 PF12569 NARP1: NMDA receptor- 99.1 6.3E-07 1.4E-11 93.9 33.0 261 89-371 9-292 (517)
81 KOG0985 Vesicle coat protein c 99.1 3.7E-05 8.1E-10 82.3 45.3 186 99-286 658-887 (1666)
82 KOG2376 Signal recognition par 99.0 6.4E-06 1.4E-10 83.2 37.1 451 206-758 18-517 (652)
83 KOG1174 Anaphase-promoting com 99.0 2E-05 4.3E-10 76.0 37.1 157 597-760 340-499 (564)
84 KOG1840 Kinesin light chain [C 99.0 4.6E-07 9.9E-12 93.7 26.8 250 119-403 199-477 (508)
85 COG3063 PilF Tfp pilus assembl 98.9 2.6E-07 5.6E-12 81.9 20.1 188 592-784 36-224 (250)
86 KOG3616 Selective LIM binding 98.9 1.8E-05 3.9E-10 81.7 35.9 81 89-180 594-674 (1636)
87 PRK11189 lipoprotein NlpI; Pro 98.9 7.2E-07 1.6E-11 88.6 25.8 174 588-771 95-274 (296)
88 KOG4340 Uncharacterized conser 98.9 1E-05 2.2E-10 74.4 28.8 194 86-303 12-210 (459)
89 PRK11189 lipoprotein NlpI; Pro 98.9 4.3E-06 9.4E-11 83.0 29.2 221 214-443 40-268 (296)
90 KOG1127 TPR repeat-containing 98.9 2.8E-05 6.1E-10 83.4 35.2 155 602-761 934-1104(1238)
91 KOG1174 Anaphase-promoting com 98.8 0.00013 2.9E-09 70.5 39.9 80 608-690 421-500 (564)
92 KOG3617 WD40 and TPR repeat-co 98.8 0.00032 7E-09 73.8 42.1 342 82-473 755-1172(1416)
93 cd05804 StaR_like StaR_like; a 98.8 3.7E-05 8E-10 79.7 34.6 95 238-333 116-213 (355)
94 KOG1127 TPR repeat-containing 98.8 7.9E-05 1.7E-09 80.1 35.8 183 135-333 474-657 (1238)
95 cd05804 StaR_like StaR_like; a 98.8 4.1E-05 8.9E-10 79.3 33.9 261 209-474 52-335 (355)
96 KOG4340 Uncharacterized conser 98.7 3.2E-05 6.9E-10 71.2 27.4 320 120-471 11-335 (459)
97 KOG0548 Molecular co-chaperone 98.7 0.00011 2.4E-09 73.8 33.2 104 162-281 10-114 (539)
98 KOG1914 mRNA cleavage and poly 98.7 0.00044 9.4E-09 69.6 41.1 151 607-761 347-501 (656)
99 PF04733 Coatomer_E: Coatomer 98.7 1.6E-06 3.6E-11 84.5 19.1 170 598-781 109-283 (290)
100 KOG1914 mRNA cleavage and poly 98.7 0.00055 1.2E-08 68.9 41.5 85 605-690 415-501 (656)
101 PRK04841 transcriptional regul 98.7 0.00015 3.2E-09 85.7 38.7 343 316-762 384-761 (903)
102 PRK04841 transcriptional regul 98.6 0.0003 6.5E-09 83.1 38.9 341 280-726 383-760 (903)
103 KOG1125 TPR repeat-containing 98.6 1.6E-05 3.4E-10 80.4 23.0 232 92-333 293-525 (579)
104 PF12854 PPR_1: PPR repeat 98.6 6E-08 1.3E-12 59.2 3.8 31 693-723 3-33 (34)
105 KOG0624 dsRNA-activated protei 98.6 0.00059 1.3E-08 64.5 30.7 206 245-477 164-372 (504)
106 PF12854 PPR_1: PPR repeat 98.6 8.9E-08 1.9E-12 58.4 3.9 33 726-758 1-33 (34)
107 KOG1070 rRNA processing protei 98.5 5.9E-05 1.3E-09 83.9 27.3 222 410-747 1457-1686(1710)
108 KOG0624 dsRNA-activated protei 98.5 0.00047 1E-08 65.2 29.3 211 89-307 43-257 (504)
109 PF04733 Coatomer_E: Coatomer 98.5 3.7E-06 8.1E-11 82.0 16.4 148 281-439 112-264 (290)
110 KOG0548 Molecular co-chaperone 98.5 0.0001 2.2E-09 74.1 26.1 389 60-476 15-456 (539)
111 TIGR03302 OM_YfiO outer membra 98.5 3E-05 6.6E-10 74.7 21.7 172 587-761 29-232 (235)
112 KOG2053 Mitochondrial inherita 98.5 0.0039 8.4E-08 67.1 50.5 219 63-301 25-256 (932)
113 KOG1070 rRNA processing protei 98.4 0.00023 5.1E-09 79.4 27.6 166 202-374 1499-1667(1710)
114 KOG1128 Uncharacterized conser 98.4 0.00026 5.6E-09 74.0 26.4 120 588-709 516-635 (777)
115 KOG1125 TPR repeat-containing 98.4 0.00017 3.7E-09 73.3 24.4 135 617-755 421-565 (579)
116 COG5010 TadD Flp pilus assembl 98.3 7.1E-05 1.5E-09 68.4 18.3 166 588-759 64-229 (257)
117 PLN02789 farnesyltranstransfer 98.3 0.0006 1.3E-08 67.7 26.3 115 235-352 141-266 (320)
118 PLN02789 farnesyltranstransfer 98.3 0.0008 1.7E-08 66.8 26.7 203 250-458 51-267 (320)
119 KOG3081 Vesicle coat complex C 98.3 0.00071 1.5E-08 61.9 23.6 151 278-439 115-270 (299)
120 KOG1128 Uncharacterized conser 98.3 0.00016 3.4E-09 75.5 21.3 221 151-405 395-616 (777)
121 COG5010 TadD Flp pilus assembl 98.3 0.0002 4.2E-09 65.6 19.3 126 202-331 102-227 (257)
122 TIGR03302 OM_YfiO outer membra 98.3 0.00025 5.5E-09 68.3 21.9 185 118-335 32-232 (235)
123 PRK10370 formate-dependent nit 98.2 0.00054 1.2E-08 63.1 22.1 161 596-773 21-184 (198)
124 KOG2053 Mitochondrial inherita 98.2 0.016 3.5E-07 62.5 47.8 225 165-408 20-258 (932)
125 PRK14720 transcript cleavage f 98.2 0.00084 1.8E-08 74.5 25.7 168 118-335 30-198 (906)
126 PRK15359 type III secretion sy 98.2 0.00017 3.7E-09 62.6 16.6 92 631-725 29-120 (144)
127 COG4783 Putative Zn-dependent 98.2 0.0003 6.4E-09 70.2 19.7 152 598-773 313-465 (484)
128 PRK10370 formate-dependent nit 98.1 0.00013 2.9E-09 67.1 15.9 125 604-733 52-179 (198)
129 KOG3081 Vesicle coat complex C 98.1 0.0067 1.4E-07 55.8 25.4 159 597-769 114-277 (299)
130 TIGR00756 PPR pentatricopeptid 98.1 6.5E-06 1.4E-10 51.4 4.1 33 734-766 2-34 (35)
131 PRK14720 transcript cleavage f 98.0 0.0021 4.7E-08 71.4 25.8 223 196-457 27-268 (906)
132 PRK15359 type III secretion sy 98.0 0.00026 5.6E-09 61.5 15.2 100 590-691 23-122 (144)
133 PRK15179 Vi polysaccharide bio 98.0 0.0024 5.3E-08 70.3 25.7 67 588-655 151-217 (694)
134 TIGR02552 LcrH_SycD type III s 98.0 0.00045 9.8E-09 59.7 15.9 106 661-771 17-122 (135)
135 PRK15179 Vi polysaccharide bio 98.0 0.0037 7.9E-08 68.9 25.8 135 196-335 82-217 (694)
136 TIGR00756 PPR pentatricopeptid 98.0 1.4E-05 3E-10 49.8 4.5 34 699-732 2-35 (35)
137 PF13812 PPR_3: Pentatricopept 98.0 1.4E-05 3.1E-10 49.3 4.3 32 734-765 3-34 (34)
138 TIGR02552 LcrH_SycD type III s 97.9 0.00043 9.4E-09 59.8 14.8 97 627-726 18-114 (135)
139 PF13812 PPR_3: Pentatricopept 97.9 2E-05 4.3E-10 48.6 4.5 33 698-730 2-34 (34)
140 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00037 8.1E-09 70.5 15.6 122 630-759 173-295 (395)
141 COG4783 Putative Zn-dependent 97.9 0.0038 8.2E-08 62.7 22.0 119 164-298 316-435 (484)
142 KOG3060 Uncharacterized conser 97.9 0.01 2.2E-07 54.2 22.5 124 599-726 94-220 (289)
143 KOG3060 Uncharacterized conser 97.9 0.015 3.2E-07 53.2 23.4 151 133-299 26-182 (289)
144 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00056 1.2E-08 69.2 16.4 129 589-724 167-295 (395)
145 PF09976 TPR_21: Tetratricopep 97.8 0.0012 2.5E-08 57.7 14.5 115 639-757 24-143 (145)
146 PF05843 Suf: Suppressor of fo 97.7 0.00078 1.7E-08 66.1 14.3 145 592-740 2-148 (280)
147 PF09976 TPR_21: Tetratricopep 97.7 0.0021 4.5E-08 56.1 15.3 128 591-723 12-144 (145)
148 PF07079 DUF1347: Protein of u 97.7 0.075 1.6E-06 53.0 43.8 465 165-771 17-529 (549)
149 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.076 1.6E-06 52.8 36.8 85 196-284 38-122 (660)
150 PF01535 PPR: PPR repeat; Int 97.7 5.6E-05 1.2E-09 45.4 3.4 29 734-762 2-30 (31)
151 PF01535 PPR: PPR repeat; Int 97.6 5.6E-05 1.2E-09 45.4 3.2 30 699-728 2-31 (31)
152 PF10037 MRP-S27: Mitochondria 97.6 0.00098 2.1E-08 67.8 13.7 120 269-388 64-185 (429)
153 PF05843 Suf: Suppressor of fo 97.6 0.0013 2.9E-08 64.4 14.3 131 627-761 2-136 (280)
154 PF10037 MRP-S27: Mitochondria 97.6 0.00091 2E-08 68.0 13.1 120 340-459 65-186 (429)
155 PF08579 RPM2: Mitochondrial r 97.6 0.0012 2.6E-08 51.9 10.4 75 313-387 32-115 (120)
156 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0026 5.7E-08 53.4 13.5 99 663-761 4-105 (119)
157 PF12895 Apc3: Anaphase-promot 97.5 0.00022 4.7E-09 55.4 5.8 82 674-757 2-83 (84)
158 PF08579 RPM2: Mitochondrial r 97.5 0.0014 3E-08 51.6 9.6 76 242-317 31-115 (120)
159 KOG2041 WD40 repeat protein [G 97.5 0.2 4.3E-06 52.8 30.4 179 196-399 688-875 (1189)
160 PRK10153 DNA-binding transcrip 97.4 0.012 2.5E-07 62.9 18.7 146 621-772 332-491 (517)
161 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0064 1.4E-07 51.0 13.9 96 631-726 7-105 (119)
162 cd00189 TPR Tetratricopeptide 97.4 0.0025 5.5E-08 50.7 11.1 91 666-759 5-95 (100)
163 PF06239 ECSIT: Evolutionarily 97.4 0.0046 1E-07 55.4 12.8 48 270-317 46-98 (228)
164 cd00189 TPR Tetratricopeptide 97.3 0.0036 7.7E-08 49.8 11.5 92 631-725 5-96 (100)
165 PF04840 Vps16_C: Vps16, C-ter 97.3 0.19 4.1E-06 50.0 25.1 110 308-437 179-288 (319)
166 PRK15363 pathogenicity island 97.3 0.013 2.9E-07 50.1 14.6 103 588-692 32-134 (157)
167 PF14938 SNAP: Soluble NSF att 97.3 0.0037 8E-08 61.7 12.5 100 83-183 34-144 (282)
168 COG4700 Uncharacterized protei 97.2 0.087 1.9E-06 45.8 18.2 134 623-758 86-219 (251)
169 PF06239 ECSIT: Evolutionarily 97.2 0.0086 1.9E-07 53.7 12.8 104 303-425 44-152 (228)
170 CHL00033 ycf3 photosystem I as 97.2 0.0078 1.7E-07 54.2 12.7 94 626-721 35-137 (168)
171 PLN03088 SGT1, suppressor of 97.2 0.012 2.7E-07 60.0 15.3 87 636-725 12-98 (356)
172 PF14938 SNAP: Soluble NSF att 97.1 0.08 1.7E-06 52.3 20.5 171 121-335 37-225 (282)
173 PRK02603 photosystem I assembl 97.1 0.025 5.5E-07 51.1 15.7 89 627-717 36-126 (172)
174 PRK10866 outer membrane biogen 97.1 0.19 4E-06 48.1 21.8 76 89-165 37-115 (243)
175 PRK10866 outer membrane biogen 97.1 0.15 3.2E-06 48.8 21.2 166 590-759 31-239 (243)
176 KOG2041 WD40 repeat protein [G 97.1 0.25 5.5E-06 52.0 23.4 53 235-296 851-903 (1189)
177 KOG0553 TPR repeat-containing 97.1 0.0077 1.7E-07 56.7 11.5 95 636-736 91-186 (304)
178 PLN03088 SGT1, suppressor of 97.1 0.015 3.3E-07 59.3 14.8 99 668-772 9-108 (356)
179 PF12895 Apc3: Anaphase-promot 97.0 0.002 4.3E-08 49.9 6.5 81 639-722 2-83 (84)
180 PRK02603 photosystem I assembl 97.0 0.033 7.2E-07 50.3 15.3 95 589-684 33-129 (172)
181 COG4700 Uncharacterized protei 96.9 0.24 5.2E-06 43.2 18.2 104 115-228 85-188 (251)
182 PRK10153 DNA-binding transcrip 96.9 0.053 1.1E-06 58.0 17.8 36 148-183 331-371 (517)
183 KOG0553 TPR repeat-containing 96.9 0.012 2.7E-07 55.3 11.1 99 598-702 88-187 (304)
184 PRK15363 pathogenicity island 96.9 0.023 5E-07 48.7 11.8 94 379-474 38-131 (157)
185 PF14559 TPR_19: Tetratricopep 96.9 0.0053 1.2E-07 45.2 7.1 51 673-725 3-53 (68)
186 PF12688 TPR_5: Tetratrico pep 96.8 0.1 2.2E-06 43.1 14.7 93 632-724 7-102 (120)
187 PF13525 YfiO: Outer membrane 96.8 0.26 5.7E-06 45.8 19.1 59 125-183 11-71 (203)
188 CHL00033 ycf3 photosystem I as 96.7 0.032 7E-07 50.2 12.7 82 235-317 34-117 (168)
189 PF13281 DUF4071: Domain of un 96.7 0.65 1.4E-05 46.7 22.1 176 588-767 138-339 (374)
190 PF12688 TPR_5: Tetratrico pep 96.6 0.1 2.2E-06 43.1 13.5 56 127-182 9-66 (120)
191 KOG1130 Predicted G-alpha GTPa 96.6 0.046 1E-06 53.6 13.0 135 627-761 196-344 (639)
192 KOG1130 Predicted G-alpha GTPa 96.6 0.02 4.4E-07 56.0 10.5 133 592-724 196-342 (639)
193 PF13432 TPR_16: Tetratricopep 96.6 0.0099 2.1E-07 43.2 6.6 54 705-759 5-58 (65)
194 PF14559 TPR_19: Tetratricopep 96.5 0.011 2.3E-07 43.5 6.8 62 637-702 2-63 (68)
195 COG4235 Cytochrome c biogenesi 96.5 0.15 3.3E-06 48.6 15.6 99 659-761 154-256 (287)
196 PF03704 BTAD: Bacterial trans 96.5 0.12 2.7E-06 45.0 14.4 68 665-734 66-138 (146)
197 KOG2796 Uncharacterized conser 96.4 0.19 4E-06 46.5 14.9 140 593-736 179-323 (366)
198 KOG0550 Molecular chaperone (D 96.4 1.2 2.5E-05 44.5 21.6 152 280-440 178-350 (486)
199 PF13525 YfiO: Outer membrane 96.4 0.62 1.3E-05 43.3 19.2 171 591-783 5-191 (203)
200 PF13432 TPR_16: Tetratricopep 96.4 0.018 3.9E-07 41.8 7.1 53 636-689 7-59 (65)
201 PF03704 BTAD: Bacterial trans 96.3 0.071 1.5E-06 46.6 12.0 74 699-773 64-142 (146)
202 PF13414 TPR_11: TPR repeat; P 96.3 0.029 6.2E-07 41.3 7.8 15 709-723 15-29 (69)
203 KOG1538 Uncharacterized conser 96.2 1.5 3.3E-05 46.1 21.8 55 274-331 601-657 (1081)
204 PRK10803 tol-pal system protei 96.2 0.093 2E-06 50.6 12.9 99 628-726 145-246 (263)
205 PF12921 ATP13: Mitochondrial 96.2 0.055 1.2E-06 45.2 9.8 97 153-281 1-98 (126)
206 PF13414 TPR_11: TPR repeat; P 96.2 0.028 6.1E-07 41.4 7.4 60 663-724 5-65 (69)
207 COG3898 Uncharacterized membra 96.2 1.5 3.3E-05 43.3 31.7 199 236-444 188-396 (531)
208 COG4235 Cytochrome c biogenesi 96.2 0.49 1.1E-05 45.2 16.9 129 606-740 137-268 (287)
209 KOG2280 Vacuolar assembly/sort 96.1 2.7 5.8E-05 45.4 25.3 322 112-472 425-770 (829)
210 PF12921 ATP13: Mitochondrial 96.0 0.17 3.8E-06 42.2 11.9 52 657-708 48-99 (126)
211 PRK10803 tol-pal system protei 96.0 0.2 4.2E-06 48.4 13.9 100 84-183 143-246 (263)
212 PF13424 TPR_12: Tetratricopep 95.9 0.038 8.3E-07 41.9 7.1 61 699-759 7-73 (78)
213 KOG2796 Uncharacterized conser 95.9 1.5 3.3E-05 40.8 22.1 30 85-114 70-99 (366)
214 PF07079 DUF1347: Protein of u 95.8 2.5 5.4E-05 42.8 43.5 58 637-702 473-530 (549)
215 PRK15331 chaperone protein Sic 95.8 0.12 2.7E-06 44.5 10.2 101 588-690 34-134 (165)
216 PF13281 DUF4071: Domain of un 95.7 1.6 3.4E-05 44.1 19.1 101 82-182 139-254 (374)
217 PF13424 TPR_12: Tetratricopep 95.7 0.04 8.8E-07 41.8 6.4 62 663-724 7-73 (78)
218 PF13371 TPR_9: Tetratricopept 95.6 0.055 1.2E-06 40.3 7.0 53 636-689 5-57 (73)
219 KOG1585 Protein required for f 95.6 1.7 3.7E-05 40.0 16.8 95 78-182 25-119 (308)
220 KOG0550 Molecular chaperone (D 95.6 2.9 6.2E-05 41.8 21.4 87 636-726 259-350 (486)
221 PF04840 Vps16_C: Vps16, C-ter 95.6 2.9 6.2E-05 41.8 30.4 108 595-723 181-288 (319)
222 PF08631 SPO22: Meiosis protei 95.6 2.7 5.8E-05 41.4 25.4 165 591-759 84-273 (278)
223 PF10300 DUF3808: Protein of u 95.3 1.4 3E-05 47.0 18.4 191 593-786 190-401 (468)
224 COG3118 Thioredoxin domain-con 95.3 0.84 1.8E-05 43.5 14.5 50 96-146 146-195 (304)
225 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.53 1.2E-05 48.0 14.0 66 623-690 72-141 (453)
226 PF09205 DUF1955: Domain of un 95.2 1.5 3.2E-05 36.1 14.5 62 596-658 91-152 (161)
227 COG5107 RNA14 Pre-mRNA 3'-end 95.2 4.1 8.9E-05 41.2 40.6 131 591-725 397-530 (660)
228 PF07035 Mic1: Colon cancer-as 95.1 2.2 4.7E-05 37.5 15.9 31 293-323 16-46 (167)
229 COG3898 Uncharacterized membra 95.1 4 8.6E-05 40.5 33.5 126 633-766 270-397 (531)
230 PF13371 TPR_9: Tetratricopept 95.0 0.13 2.7E-06 38.4 7.2 55 162-228 3-57 (73)
231 KOG1538 Uncharacterized conser 94.9 2.3 5E-05 44.9 17.5 55 87-144 601-657 (1081)
232 PRK15331 chaperone protein Sic 94.8 1 2.2E-05 39.1 12.5 89 384-474 45-133 (165)
233 KOG2114 Vacuolar assembly/sort 94.7 8.5 0.00019 42.4 25.9 176 202-402 336-516 (933)
234 PF13170 DUF4003: Protein of u 94.6 3 6.4E-05 41.1 17.1 132 644-777 80-227 (297)
235 PF07035 Mic1: Colon cancer-as 94.5 2.8 6.1E-05 36.8 14.8 138 326-477 14-151 (167)
236 PF04053 Coatomer_WDAD: Coatom 94.4 1.3 2.8E-05 46.5 15.0 161 91-297 268-428 (443)
237 PF04053 Coatomer_WDAD: Coatom 94.2 1.5 3.3E-05 46.0 15.0 158 209-401 270-427 (443)
238 PF09613 HrpB1_HrpK: Bacterial 94.2 1.6 3.5E-05 37.8 12.4 19 671-689 54-72 (160)
239 COG1729 Uncharacterized protei 94.2 0.7 1.5E-05 43.6 11.1 99 157-265 145-244 (262)
240 PLN03098 LPA1 LOW PSII ACCUMUL 93.8 0.33 7.2E-06 49.5 8.9 102 658-766 72-179 (453)
241 COG3118 Thioredoxin domain-con 93.8 6.6 0.00014 37.7 17.7 145 161-320 141-286 (304)
242 PF10300 DUF3808: Protein of u 93.8 4.4 9.6E-05 43.2 17.9 116 356-474 248-375 (468)
243 KOG3941 Intermediate in Toll s 93.8 1 2.2E-05 42.3 11.1 30 287-316 88-117 (406)
244 smart00299 CLH Clathrin heavy 93.6 2.2 4.8E-05 36.8 13.0 42 596-638 12-53 (140)
245 PF08631 SPO22: Meiosis protei 93.6 8.1 0.00018 38.0 26.2 124 211-335 4-150 (278)
246 KOG2610 Uncharacterized conser 93.5 1.8 3.9E-05 41.8 12.5 153 603-759 115-274 (491)
247 KOG3941 Intermediate in Toll s 93.3 1.5 3.3E-05 41.2 11.3 51 303-353 64-119 (406)
248 KOG1941 Acetylcholine receptor 93.2 7.7 0.00017 38.2 16.3 131 595-725 126-274 (518)
249 COG1729 Uncharacterized protei 93.1 1.6 3.5E-05 41.3 11.6 59 667-725 184-243 (262)
250 KOG0543 FKBP-type peptidyl-pro 93.1 1.6 3.5E-05 43.6 12.0 123 633-759 215-353 (397)
251 COG4105 ComL DNA uptake lipopr 93.0 8.1 0.00018 36.4 21.7 74 92-165 42-117 (254)
252 PF13512 TPR_18: Tetratricopep 92.8 3.2 7E-05 35.2 11.8 84 590-673 9-94 (142)
253 KOG4555 TPR repeat-containing 92.7 2.7 5.9E-05 34.5 10.6 89 93-182 52-143 (175)
254 PF09205 DUF1955: Domain of un 92.7 5 0.00011 33.2 14.8 62 274-336 89-150 (161)
255 smart00299 CLH Clathrin heavy 92.7 5.9 0.00013 34.1 15.3 15 250-264 21-35 (140)
256 PF13512 TPR_18: Tetratricopep 92.7 3.5 7.5E-05 35.0 11.8 80 206-285 16-96 (142)
257 COG4105 ComL DNA uptake lipopr 92.6 9.3 0.0002 36.0 21.9 63 120-183 36-100 (254)
258 PRK11906 transcriptional regul 92.5 9.6 0.00021 39.4 16.8 148 606-759 273-434 (458)
259 KOG0543 FKBP-type peptidyl-pro 92.4 2 4.3E-05 43.0 11.6 126 596-725 213-354 (397)
260 COG3629 DnrI DNA-binding trans 92.3 1.7 3.8E-05 41.7 10.9 78 662-741 154-236 (280)
261 KOG1920 IkappaB kinase complex 92.2 27 0.00059 40.5 26.2 127 206-334 683-820 (1265)
262 PRK11906 transcriptional regul 92.0 2.9 6.4E-05 43.0 12.6 117 605-724 318-434 (458)
263 KOG1258 mRNA processing protei 91.9 20 0.00043 38.2 36.2 133 200-335 45-180 (577)
264 KOG2280 Vacuolar assembly/sort 91.9 22 0.00049 38.8 34.9 113 625-757 683-795 (829)
265 KOG2114 Vacuolar assembly/sort 91.8 25 0.00053 39.1 28.0 179 84-297 334-516 (933)
266 COG4649 Uncharacterized protei 91.8 8.3 0.00018 33.7 13.4 135 118-265 58-196 (221)
267 PF04184 ST7: ST7 protein; In 91.8 18 0.0004 37.6 19.0 163 124-313 173-338 (539)
268 PF04184 ST7: ST7 protein; In 91.7 18 0.00038 37.7 17.4 75 666-741 264-340 (539)
269 PF13428 TPR_14: Tetratricopep 91.6 0.59 1.3E-05 30.4 5.0 40 120-160 2-41 (44)
270 KOG1941 Acetylcholine receptor 91.6 10 0.00022 37.3 14.9 167 202-368 85-273 (518)
271 PF02284 COX5A: Cytochrome c o 91.4 3.1 6.7E-05 32.5 9.1 80 83-163 7-88 (108)
272 KOG4555 TPR repeat-containing 91.4 4.7 0.0001 33.2 10.6 92 635-727 52-145 (175)
273 KOG1258 mRNA processing protei 91.0 24 0.00053 37.6 35.4 100 375-475 296-395 (577)
274 TIGR02561 HrpB1_HrpK type III 91.0 5.9 0.00013 33.7 11.2 48 639-690 23-73 (153)
275 COG4649 Uncharacterized protei 90.7 11 0.00024 33.0 14.2 52 709-760 144-195 (221)
276 PF13428 TPR_14: Tetratricopep 90.5 0.8 1.7E-05 29.8 4.9 27 594-620 4-30 (44)
277 KOG2610 Uncharacterized conser 90.5 18 0.00039 35.3 15.4 47 248-295 187-233 (491)
278 COG1747 Uncharacterized N-term 90.2 26 0.00056 36.5 21.6 164 589-761 64-234 (711)
279 KOG1585 Protein required for f 90.1 16 0.00035 34.0 18.2 204 155-398 32-249 (308)
280 COG3629 DnrI DNA-binding trans 90.1 3 6.6E-05 40.1 10.2 77 591-668 153-234 (280)
281 PF13176 TPR_7: Tetratricopept 89.9 0.62 1.3E-05 28.7 3.7 26 734-759 1-26 (36)
282 PF11207 DUF2989: Protein of u 89.7 5.4 0.00012 36.1 10.7 73 101-174 123-198 (203)
283 PF09613 HrpB1_HrpK: Bacterial 88.8 14 0.0003 32.2 12.1 55 599-655 18-73 (160)
284 cd00923 Cyt_c_Oxidase_Va Cytoc 88.7 3.5 7.5E-05 31.9 7.4 70 712-782 22-92 (103)
285 PF13176 TPR_7: Tetratricopept 88.5 1.1 2.4E-05 27.6 4.1 26 699-724 1-26 (36)
286 cd00923 Cyt_c_Oxidase_Va Cytoc 88.4 7.1 0.00015 30.3 8.9 78 85-163 6-85 (103)
287 PF02284 COX5A: Cytochrome c o 88.3 10 0.00022 29.8 9.8 68 715-783 28-96 (108)
288 COG4785 NlpI Lipoprotein NlpI, 88.2 20 0.00044 32.7 16.5 177 572-761 80-266 (297)
289 COG1747 Uncharacterized N-term 88.0 37 0.0008 35.5 21.3 184 82-279 64-247 (711)
290 PF13170 DUF4003: Protein of u 87.9 30 0.00064 34.3 21.1 127 254-382 80-223 (297)
291 PF10602 RPN7: 26S proteasome 87.1 10 0.00023 34.1 11.2 59 379-437 39-99 (177)
292 KOG2396 HAT (Half-A-TPR) repea 86.8 43 0.00094 35.0 41.4 100 623-725 456-558 (568)
293 KOG1920 IkappaB kinase complex 86.7 71 0.0015 37.4 25.4 43 103-147 776-820 (1265)
294 KOG1550 Extracellular protein 86.7 55 0.0012 36.0 20.6 184 216-406 228-427 (552)
295 KOG4570 Uncharacterized conser 86.6 7.1 0.00015 37.6 9.8 47 287-333 116-162 (418)
296 KOG1586 Protein required for f 86.3 28 0.00061 32.3 13.3 27 745-771 167-193 (288)
297 PF00637 Clathrin: Region in C 85.0 0.054 1.2E-06 47.1 -4.5 54 90-143 13-66 (143)
298 PF10602 RPN7: 26S proteasome 84.8 14 0.0003 33.3 10.7 64 627-690 37-102 (177)
299 PF08424 NRDE-2: NRDE-2, neces 84.2 50 0.0011 33.3 19.3 124 643-769 48-192 (321)
300 PF10345 Cohesin_load: Cohesin 84.1 78 0.0017 35.5 42.3 185 218-403 39-252 (608)
301 KOG2297 Predicted translation 83.7 44 0.00096 32.3 17.2 172 269-466 163-341 (412)
302 PF13431 TPR_17: Tetratricopep 82.4 2.2 4.7E-05 25.8 3.2 20 697-716 13-32 (34)
303 PF04097 Nic96: Nup93/Nic96; 82.2 90 0.002 34.9 19.9 98 42-148 77-181 (613)
304 PF13929 mRNA_stabil: mRNA sta 82.0 51 0.0011 31.9 16.9 58 268-325 199-257 (292)
305 KOG0276 Vesicle coat complex C 81.5 14 0.00031 39.1 10.4 98 282-400 648-745 (794)
306 KOG4570 Uncharacterized conser 81.4 14 0.00029 35.8 9.4 103 266-370 59-164 (418)
307 PF07719 TPR_2: Tetratricopept 80.7 3.9 8.6E-05 24.3 4.1 25 735-759 4-28 (34)
308 PF13374 TPR_10: Tetratricopep 80.4 3.7 8.1E-05 25.9 4.1 27 733-759 3-29 (42)
309 COG2976 Uncharacterized protei 80.1 46 0.00099 30.1 12.4 92 162-265 97-188 (207)
310 PF02259 FAT: FAT domain; Int 79.9 75 0.0016 32.5 23.4 63 307-369 147-212 (352)
311 PF00515 TPR_1: Tetratricopept 79.6 5 0.00011 24.0 4.2 27 699-725 3-29 (34)
312 COG0457 NrfG FOG: TPR repeat [ 79.5 54 0.0012 30.6 29.9 62 412-473 60-122 (291)
313 PF13374 TPR_10: Tetratricopep 78.7 5.3 0.00012 25.2 4.5 28 698-725 3-30 (42)
314 COG0457 NrfG FOG: TPR repeat [ 78.6 58 0.0013 30.4 30.0 224 250-475 37-265 (291)
315 TIGR02561 HrpB1_HrpK type III 78.4 43 0.00092 28.8 11.6 52 212-265 22-73 (153)
316 PF13431 TPR_17: Tetratricopep 78.3 3.1 6.7E-05 25.2 2.9 21 625-645 12-32 (34)
317 KOG1550 Extracellular protein 77.5 1.2E+02 0.0026 33.5 18.9 114 356-475 308-426 (552)
318 COG4785 NlpI Lipoprotein NlpI, 77.2 60 0.0013 29.8 17.0 162 232-405 94-266 (297)
319 PF11207 DUF2989: Protein of u 77.0 28 0.00061 31.7 9.6 79 132-219 119-197 (203)
320 KOG0991 Replication factor C, 76.2 67 0.0015 29.9 12.5 142 593-744 132-284 (333)
321 COG3947 Response regulator con 76.1 78 0.0017 30.6 16.4 59 594-653 282-340 (361)
322 KOG4077 Cytochrome c oxidase, 75.9 34 0.00075 28.1 8.7 79 83-162 46-126 (149)
323 KOG2063 Vacuolar assembly/sort 74.6 1.6E+02 0.0034 34.0 16.7 39 209-248 600-638 (877)
324 PF07575 Nucleopor_Nup85: Nup8 74.5 1.5E+02 0.0032 33.0 18.7 94 308-405 374-467 (566)
325 PF07719 TPR_2: Tetratricopept 73.4 12 0.00026 22.1 4.8 28 121-148 3-30 (34)
326 PF13174 TPR_6: Tetratricopept 73.3 5.1 0.00011 23.6 3.0 23 738-760 6-28 (33)
327 PF10345 Cohesin_load: Cohesin 73.1 1.6E+02 0.0036 32.9 42.5 198 83-297 29-251 (608)
328 PF00637 Clathrin: Region in C 73.0 1.2 2.5E-05 38.7 0.1 87 631-725 12-98 (143)
329 KOG4077 Cytochrome c oxidase, 71.7 26 0.00057 28.8 7.2 47 715-761 67-113 (149)
330 KOG0276 Vesicle coat complex C 71.7 1.4E+02 0.003 32.3 14.1 131 273-436 616-746 (794)
331 KOG2066 Vacuolar assembly/sort 71.6 1.8E+02 0.0038 32.6 28.2 169 89-298 361-532 (846)
332 KOG4234 TPR repeat-containing 71.1 82 0.0018 28.6 10.8 88 635-726 104-197 (271)
333 PF07721 TPR_4: Tetratricopept 71.0 6.2 0.00013 22.0 2.7 19 737-755 6-24 (26)
334 PF13929 mRNA_stabil: mRNA sta 70.6 1.1E+02 0.0024 29.8 21.1 137 321-457 143-289 (292)
335 PF10579 Rapsyn_N: Rapsyn N-te 69.8 14 0.0003 27.5 4.9 48 709-756 18-67 (80)
336 PF07163 Pex26: Pex26 protein; 69.8 97 0.0021 29.9 11.5 85 633-720 90-181 (309)
337 COG2909 MalT ATP-dependent tra 69.7 2.1E+02 0.0045 32.7 27.0 165 602-766 469-652 (894)
338 COG4455 ImpE Protein of avirul 68.8 42 0.00091 30.8 8.6 76 344-420 4-81 (273)
339 TIGR03504 FimV_Cterm FimV C-te 67.7 15 0.00033 23.9 4.3 24 417-440 5-28 (44)
340 COG3947 Response regulator con 67.2 1.3E+02 0.0027 29.3 17.2 58 275-333 283-340 (361)
341 COG2976 Uncharacterized protei 66.9 1E+02 0.0022 28.0 13.8 54 706-761 135-188 (207)
342 TIGR03504 FimV_Cterm FimV C-te 66.7 12 0.00027 24.2 3.8 26 124-149 4-29 (44)
343 TIGR02508 type_III_yscG type I 66.4 63 0.0014 25.5 8.3 48 671-725 49-96 (115)
344 PF13181 TPR_8: Tetratricopept 66.3 15 0.00033 21.8 4.1 27 734-760 3-29 (34)
345 PRK08691 DNA polymerase III su 65.7 85 0.0018 35.1 12.0 85 642-729 180-277 (709)
346 PF13181 TPR_8: Tetratricopept 65.6 17 0.00038 21.5 4.3 27 663-689 3-29 (34)
347 PF07163 Pex26: Pex26 protein; 64.0 1.4E+02 0.0031 28.8 12.2 92 121-223 85-181 (309)
348 PF13762 MNE1: Mitochondrial s 63.9 54 0.0012 28.2 8.1 86 85-170 40-131 (145)
349 COG2909 MalT ATP-dependent tra 63.1 2.8E+02 0.006 31.8 27.6 56 631-686 623-684 (894)
350 PF13174 TPR_6: Tetratricopept 63.0 17 0.00037 21.2 3.8 26 123-148 4-29 (33)
351 PF08424 NRDE-2: NRDE-2, neces 62.8 1.8E+02 0.0038 29.4 15.9 123 607-731 47-189 (321)
352 KOG2063 Vacuolar assembly/sort 61.8 3.1E+02 0.0067 31.9 23.6 61 87-147 310-374 (877)
353 PF14853 Fis1_TPR_C: Fis1 C-te 61.7 37 0.00081 23.2 5.5 36 737-774 6-41 (53)
354 COG4455 ImpE Protein of avirul 61.4 1.4E+02 0.003 27.7 10.4 54 125-179 7-60 (273)
355 PRK07003 DNA polymerase III su 61.1 1.2E+02 0.0025 34.5 12.0 85 642-729 180-277 (830)
356 KOG2422 Uncharacterized conser 59.8 2.5E+02 0.0055 30.3 15.4 57 91-147 349-406 (665)
357 PF06552 TOM20_plant: Plant sp 59.6 71 0.0015 28.5 8.2 74 643-727 52-137 (186)
358 KOG1464 COP9 signalosome, subu 59.3 1.7E+02 0.0036 28.0 16.6 27 238-264 147-173 (440)
359 COG0790 FOG: TPR repeat, SEL1 58.4 2E+02 0.0042 28.5 19.2 154 605-769 91-274 (292)
360 PRK14958 DNA polymerase III su 58.2 1.7E+02 0.0037 31.8 12.8 86 643-731 181-279 (509)
361 PRK14956 DNA polymerase III su 58.2 1.5E+02 0.0032 31.7 11.8 108 643-775 183-291 (484)
362 PF11846 DUF3366: Domain of un 58.1 46 0.00099 30.5 7.5 32 728-759 140-171 (193)
363 PF04097 Nic96: Nup93/Nic96; 57.5 3.2E+02 0.0069 30.7 27.8 45 203-249 114-158 (613)
364 TIGR02508 type_III_yscG type I 56.8 93 0.002 24.6 7.4 82 677-767 21-102 (115)
365 PF11848 DUF3368: Domain of un 56.8 42 0.0009 22.3 5.1 34 707-740 12-45 (48)
366 KOG4648 Uncharacterized conser 56.5 58 0.0013 32.1 7.8 54 127-181 105-158 (536)
367 PF14689 SPOB_a: Sensor_kinase 56.0 30 0.00065 24.6 4.5 29 731-759 22-50 (62)
368 KOG4648 Uncharacterized conser 55.9 93 0.002 30.8 9.0 55 598-653 104-158 (536)
369 PHA02875 ankyrin repeat protei 55.1 97 0.0021 32.7 10.5 15 278-292 72-86 (413)
370 PF09477 Type_III_YscG: Bacter 54.5 1.1E+02 0.0023 24.6 7.5 29 694-724 68-96 (116)
371 PF07575 Nucleopor_Nup85: Nup8 54.0 44 0.00096 37.0 7.8 76 104-181 390-465 (566)
372 KOG4234 TPR repeat-containing 54.0 1.4E+02 0.0031 27.2 9.1 19 94-112 105-123 (271)
373 PRK14951 DNA polymerase III su 53.3 2E+02 0.0043 32.1 12.3 86 642-730 185-283 (618)
374 PF11846 DUF3366: Domain of un 53.2 68 0.0015 29.4 7.9 34 693-726 140-173 (193)
375 PF11848 DUF3368: Domain of un 53.0 53 0.0011 21.8 5.1 33 130-162 13-45 (48)
376 PHA02875 ankyrin repeat protei 53.0 3E+02 0.0065 29.0 15.9 11 610-620 299-309 (413)
377 COG5187 RPN7 26S proteasome re 52.7 1.5E+02 0.0032 28.7 9.5 98 660-759 114-219 (412)
378 cd08819 CARD_MDA5_2 Caspase ac 52.1 1.1E+02 0.0023 23.6 7.1 66 103-174 21-86 (88)
379 smart00028 TPR Tetratricopepti 51.8 27 0.00058 19.5 3.5 25 735-759 4-28 (34)
380 KOG1464 COP9 signalosome, subu 51.7 2.2E+02 0.0049 27.2 18.4 201 196-397 22-252 (440)
381 PRK09687 putative lyase; Provi 51.2 2.5E+02 0.0055 27.6 27.8 186 235-439 67-262 (280)
382 PLN03025 replication factor C 51.0 2E+02 0.0043 29.0 11.5 87 643-732 161-259 (319)
383 PF10579 Rapsyn_N: Rapsyn N-te 49.9 53 0.0011 24.6 5.0 47 673-719 18-65 (80)
384 COG5108 RPO41 Mitochondrial DN 48.8 2.8E+02 0.006 30.5 11.8 74 631-708 33-114 (1117)
385 PF12862 Apc5: Anaphase-promot 47.2 1E+02 0.0022 24.1 6.9 52 708-759 9-68 (94)
386 PF13934 ELYS: Nuclear pore co 46.9 1.1E+02 0.0024 29.0 8.1 21 159-179 113-133 (226)
387 KOG0687 26S proteasome regulat 46.0 3.1E+02 0.0068 27.2 13.8 142 223-368 57-208 (393)
388 COG0735 Fur Fe2+/Zn2+ uptake r 45.9 1.3E+02 0.0028 26.0 7.8 66 105-171 7-72 (145)
389 cd08819 CARD_MDA5_2 Caspase ac 45.8 1.3E+02 0.0027 23.2 6.5 34 424-462 49-82 (88)
390 PF11663 Toxin_YhaV: Toxin wit 45.7 22 0.00048 29.7 2.8 19 714-732 112-130 (140)
391 PRK14963 DNA polymerase III su 45.6 3.3E+02 0.0072 29.6 12.5 86 642-731 177-275 (504)
392 PRK11619 lytic murein transgly 45.4 5E+02 0.011 29.4 41.1 73 278-356 106-178 (644)
393 PRK14960 DNA polymerase III su 44.8 3.1E+02 0.0068 30.7 12.0 87 642-731 179-278 (702)
394 KOG4507 Uncharacterized conser 44.5 2.3E+02 0.0051 30.5 10.4 130 255-387 592-721 (886)
395 COG5108 RPO41 Mitochondrial DN 44.5 98 0.0021 33.6 7.9 91 666-759 33-130 (1117)
396 PF06552 TOM20_plant: Plant sp 43.7 2.5E+02 0.0053 25.3 11.8 77 677-764 51-139 (186)
397 PF11663 Toxin_YhaV: Toxin wit 43.7 21 0.00046 29.8 2.5 31 741-773 104-134 (140)
398 smart00386 HAT HAT (Half-A-TPR 42.3 66 0.0014 18.3 4.3 15 676-690 2-16 (33)
399 PRK06645 DNA polymerase III su 42.1 3.4E+02 0.0074 29.4 11.8 87 642-731 189-291 (507)
400 PF09670 Cas_Cas02710: CRISPR- 42.1 3.7E+02 0.0081 27.9 11.9 57 598-655 138-198 (379)
401 KOG0991 Replication factor C, 41.8 3.1E+02 0.0066 25.9 11.5 128 632-769 136-275 (333)
402 COG0735 Fur Fe2+/Zn2+ uptake r 41.6 1.3E+02 0.0028 26.0 7.2 60 401-461 11-70 (145)
403 PRK15180 Vi polysaccharide bio 40.6 4.6E+02 0.01 27.6 29.5 27 744-770 788-814 (831)
404 PF14689 SPOB_a: Sensor_kinase 40.3 75 0.0016 22.6 4.6 22 667-688 29-50 (62)
405 PF05944 Phage_term_smal: Phag 40.1 1.7E+02 0.0036 24.8 7.2 46 682-728 34-79 (132)
406 KOG2396 HAT (Half-A-TPR) repea 39.9 4.9E+02 0.011 27.7 38.0 91 66-161 90-181 (568)
407 PRK12323 DNA polymerase III su 39.4 5E+02 0.011 29.2 12.4 85 642-729 185-282 (700)
408 PRK10941 hypothetical protein; 39.2 3.5E+02 0.0075 26.4 10.4 58 206-265 187-244 (269)
409 PRK11639 zinc uptake transcrip 39.1 1.2E+02 0.0025 27.2 6.7 55 693-748 22-76 (169)
410 KOG3364 Membrane protein invol 38.4 2.5E+02 0.0054 23.9 10.2 72 695-768 30-105 (149)
411 PF10366 Vps39_1: Vacuolar sor 38.3 2.2E+02 0.0047 23.1 9.0 27 238-264 41-67 (108)
412 PF08311 Mad3_BUB1_I: Mad3/BUB 38.3 2.4E+02 0.0052 23.6 10.4 43 679-721 81-123 (126)
413 PF08311 Mad3_BUB1_I: Mad3/BUB 38.2 2.4E+02 0.0052 23.6 10.3 58 121-180 67-125 (126)
414 PRK10941 hypothetical protein; 37.5 4E+02 0.0087 26.0 10.9 66 632-698 187-252 (269)
415 KOG2297 Predicted translation 37.4 4.1E+02 0.009 26.1 19.2 18 413-430 323-340 (412)
416 PRK07764 DNA polymerase III su 37.3 2.9E+02 0.0062 32.2 10.9 83 642-729 181-279 (824)
417 KOG2908 26S proteasome regulat 37.1 4.5E+02 0.0097 26.4 12.0 80 665-744 79-168 (380)
418 PF14853 Fis1_TPR_C: Fis1 C-te 37.0 1.1E+02 0.0024 20.9 4.8 20 670-689 10-29 (53)
419 KOG2062 26S proteasome regulat 36.7 6.6E+02 0.014 28.3 37.7 41 239-281 213-253 (929)
420 PRK13342 recombination factor 36.5 5.3E+02 0.012 27.2 18.6 56 249-304 243-303 (413)
421 PF02259 FAT: FAT domain; Int 36.2 4.8E+02 0.01 26.5 24.4 65 235-299 145-212 (352)
422 PRK10564 maltose regulon perip 36.0 78 0.0017 30.9 5.3 42 117-158 254-296 (303)
423 KOG2582 COP9 signalosome, subu 36.0 4.8E+02 0.01 26.5 17.5 15 249-263 196-210 (422)
424 PRK10564 maltose regulon perip 35.2 74 0.0016 31.1 5.0 42 694-735 253-295 (303)
425 PRK06305 DNA polymerase III su 35.1 5.9E+02 0.013 27.2 12.6 85 643-730 183-280 (451)
426 PRK09111 DNA polymerase III su 34.9 4.3E+02 0.0093 29.5 11.5 87 642-731 193-292 (598)
427 PRK14961 DNA polymerase III su 34.7 5.3E+02 0.011 26.6 11.9 46 642-689 180-226 (363)
428 PF13762 MNE1: Mitochondrial s 34.6 3E+02 0.0066 23.7 12.5 86 379-464 42-133 (145)
429 KOG2066 Vacuolar assembly/sort 33.9 7.5E+02 0.016 28.1 30.2 102 278-388 363-467 (846)
430 KOG2471 TPR repeat-containing 33.9 6E+02 0.013 27.0 23.9 66 699-767 621-690 (696)
431 PRK14956 DNA polymerase III su 33.9 6.3E+02 0.014 27.2 12.7 36 305-340 247-282 (484)
432 PF09670 Cas_Cas02710: CRISPR- 33.7 5.6E+02 0.012 26.6 12.9 55 635-690 140-198 (379)
433 KOG4279 Serine/threonine prote 33.1 4.3E+02 0.0093 29.6 10.5 66 83-148 200-272 (1226)
434 PF09986 DUF2225: Uncharacteri 32.9 4.2E+02 0.009 24.8 12.1 25 737-761 170-194 (214)
435 KOG4567 GTPase-activating prot 32.9 4.5E+02 0.0097 26.0 9.5 71 256-331 263-343 (370)
436 KOG3364 Membrane protein invol 32.8 3.1E+02 0.0068 23.3 9.9 69 623-691 29-101 (149)
437 TIGR02397 dnaX_nterm DNA polym 32.7 5.5E+02 0.012 26.2 12.0 86 642-730 178-276 (355)
438 KOG2659 LisH motif-containing 32.6 3.6E+02 0.0077 25.3 8.6 101 80-182 22-131 (228)
439 KOG1586 Protein required for f 32.5 4.4E+02 0.0095 25.0 19.1 21 247-267 165-185 (288)
440 COG2812 DnaX DNA polymerase II 32.5 5.5E+02 0.012 27.9 11.3 48 642-691 180-228 (515)
441 PRK14953 DNA polymerase III su 32.4 4.2E+02 0.009 28.7 10.7 88 642-732 180-280 (486)
442 KOG4567 GTPase-activating prot 32.0 4.4E+02 0.0096 26.0 9.3 57 361-422 263-319 (370)
443 PF13934 ELYS: Nuclear pore co 31.9 4.5E+02 0.0097 24.9 15.2 55 276-333 113-167 (226)
444 PF09454 Vps23_core: Vps23 cor 31.6 65 0.0014 23.2 3.1 50 82-132 6-55 (65)
445 PF12862 Apc5: Anaphase-promot 31.5 2.5E+02 0.0055 21.9 8.2 19 671-689 51-69 (94)
446 KOG1114 Tripeptidyl peptidase 31.2 9.1E+02 0.02 28.2 15.5 51 340-390 1230-1281(1304)
447 PF10366 Vps39_1: Vacuolar sor 31.1 2.9E+02 0.0062 22.4 8.9 25 594-618 42-66 (108)
448 PF10255 Paf67: RNA polymerase 30.6 4.4E+02 0.0096 27.5 10.0 102 587-688 71-191 (404)
449 cd00280 TRFH Telomeric Repeat 30.6 3.7E+02 0.0081 24.3 8.0 23 418-440 118-140 (200)
450 PRK09857 putative transposase; 30.6 3.4E+02 0.0074 26.9 9.0 58 708-766 217-274 (292)
451 PRK14971 DNA polymerase III su 30.5 8.2E+02 0.018 27.5 13.5 33 654-688 195-227 (614)
452 KOG4642 Chaperone-dependent E3 30.4 4.8E+02 0.01 24.8 11.6 87 94-184 20-108 (284)
453 PF11817 Foie-gras_1: Foie gra 30.3 2.3E+02 0.005 27.2 7.7 21 667-687 184-204 (247)
454 PRK14952 DNA polymerase III su 29.9 7.1E+02 0.015 27.7 12.0 46 643-690 180-226 (584)
455 PRK05896 DNA polymerase III su 29.0 8.3E+02 0.018 27.2 12.2 23 746-768 259-281 (605)
456 PF04190 DUF410: Protein of un 28.9 5.5E+02 0.012 24.9 19.2 83 589-690 88-170 (260)
457 PRK11619 lytic murein transgly 28.9 8.9E+02 0.019 27.4 38.7 116 250-368 255-373 (644)
458 PF12926 MOZART2: Mitotic-spin 28.8 2.7E+02 0.0059 21.4 8.1 43 140-182 29-71 (88)
459 TIGR01228 hutU urocanate hydra 28.7 7.4E+02 0.016 26.4 12.5 77 424-523 207-283 (545)
460 PRK07994 DNA polymerase III su 28.6 8.9E+02 0.019 27.4 12.5 48 642-691 180-228 (647)
461 KOG0686 COP9 signalosome, subu 28.5 6.8E+02 0.015 25.9 12.9 24 121-144 152-175 (466)
462 KOG4507 Uncharacterized conser 28.4 8.1E+02 0.018 26.8 11.2 88 637-726 618-705 (886)
463 COG5187 RPN7 26S proteasome re 27.8 5.9E+02 0.013 24.9 12.1 100 624-725 113-220 (412)
464 PF02184 HAT: HAT (Half-A-TPR) 27.6 1.4E+02 0.0031 17.9 3.5 22 713-736 3-24 (32)
465 KOG2034 Vacuolar sorting prote 27.6 1E+03 0.022 27.6 30.2 260 88-393 362-645 (911)
466 PF00244 14-3-3: 14-3-3 protei 27.5 5.5E+02 0.012 24.5 11.0 59 596-654 6-65 (236)
467 PF02847 MA3: MA3 domain; Int 27.3 1.7E+02 0.0036 23.8 5.4 23 665-687 6-28 (113)
468 PRK09687 putative lyase; Provi 27.3 6.1E+02 0.013 25.0 28.7 135 270-420 141-276 (280)
469 PF12926 MOZART2: Mitotic-spin 27.2 2.9E+02 0.0063 21.2 8.0 44 612-655 29-72 (88)
470 PF10475 DUF2450: Protein of u 27.2 6E+02 0.013 25.2 10.2 52 206-264 104-155 (291)
471 PRK09857 putative transposase; 27.2 4.4E+02 0.0095 26.1 9.1 67 664-732 209-275 (292)
472 PRK05563 DNA polymerase III su 26.9 8E+02 0.017 27.2 12.0 86 643-731 181-279 (559)
473 KOG0989 Replication factor C, 26.7 6.5E+02 0.014 25.1 9.9 24 742-765 265-288 (346)
474 KOG1166 Mitotic checkpoint ser 26.3 2.7E+02 0.0058 32.9 8.3 73 709-781 90-163 (974)
475 PF10475 DUF2450: Protein of u 26.1 5.7E+02 0.012 25.3 9.8 52 160-228 104-155 (291)
476 PF12793 SgrR_N: Sugar transpo 25.9 3.8E+02 0.0081 22.1 8.2 73 682-756 4-94 (115)
477 PF09454 Vps23_core: Vps23 cor 25.7 1.3E+02 0.0029 21.6 3.8 32 270-301 7-38 (65)
478 PF09477 Type_III_YscG: Bacter 25.5 3.7E+02 0.0079 21.8 8.7 80 675-762 20-99 (116)
479 KOG0687 26S proteasome regulat 25.3 7E+02 0.015 25.0 16.6 96 236-333 104-208 (393)
480 PRK12402 replication factor C 25.3 6.4E+02 0.014 25.4 10.6 110 676-787 185-307 (337)
481 PRK07003 DNA polymerase III su 24.6 1.1E+03 0.024 27.2 12.2 47 216-264 180-226 (830)
482 KOG3636 Uncharacterized conser 24.6 8.2E+02 0.018 25.5 14.2 88 230-318 177-272 (669)
483 PRK14950 DNA polymerase III su 24.6 8.8E+02 0.019 27.1 11.9 84 643-729 182-278 (585)
484 KOG0376 Serine-threonine phosp 24.4 1.7E+02 0.0037 30.7 5.7 105 598-709 11-117 (476)
485 PRK09462 fur ferric uptake reg 24.2 3.8E+02 0.0082 23.2 7.3 61 110-171 8-69 (148)
486 PF15297 CKAP2_C: Cytoskeleton 24.2 7.6E+02 0.016 25.0 9.9 62 323-386 120-185 (353)
487 PRK11639 zinc uptake transcrip 24.0 4.1E+02 0.0089 23.7 7.6 62 110-172 17-78 (169)
488 PRK15180 Vi polysaccharide bio 23.9 8.8E+02 0.019 25.7 27.1 86 96-183 301-386 (831)
489 KOG4642 Chaperone-dependent E3 23.7 6.4E+02 0.014 24.0 11.4 119 601-723 20-143 (284)
490 PF15297 CKAP2_C: Cytoskeleton 23.6 7.8E+02 0.017 25.0 10.0 64 678-744 120-187 (353)
491 PRK08691 DNA polymerase III su 23.6 1E+03 0.022 27.1 11.7 100 216-340 180-279 (709)
492 PRK14700 recombination factor 23.3 7.4E+02 0.016 24.6 14.8 30 44-73 62-91 (300)
493 cd07153 Fur_like Ferric uptake 23.2 2.2E+02 0.0047 23.3 5.4 47 125-171 6-52 (116)
494 PRK14949 DNA polymerase III su 23.2 1.2E+03 0.026 27.6 12.3 87 642-731 180-279 (944)
495 smart00540 LEM in nuclear memb 23.1 2E+02 0.0044 18.8 3.9 32 752-783 9-40 (44)
496 PRK14965 DNA polymerase III su 22.9 9.9E+02 0.022 26.6 11.8 85 643-730 181-278 (576)
497 smart00777 Mad3_BUB1_I Mad3/BU 22.8 4.6E+02 0.01 22.0 9.3 41 716-756 82-123 (125)
498 PF11817 Foie-gras_1: Foie gra 22.6 6E+02 0.013 24.4 9.1 56 242-297 184-244 (247)
499 KOG4279 Serine/threonine prote 22.5 1.2E+03 0.025 26.6 12.3 181 580-767 190-400 (1226)
500 KOG2471 TPR repeat-containing 22.4 9.7E+02 0.021 25.6 14.9 311 298-708 9-380 (696)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-73 Score=650.65 Aligned_cols=621 Identities=19% Similarity=0.259 Sum_probs=545.4
Q ss_pred CcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003872 81 KHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSV 160 (790)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (790)
.+++..++.++..+++.|++++|..+|+.|.+.|+.|+..+|..++.+|.+.+.++.|.+++..+.+.+..++...++.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 36778889999999999999999999999999888889999999999999999999999999999888888888889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHH
Q 003872 161 LVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYN 240 (790)
Q Consensus 161 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (790)
+.+|++.|+++.|..+|++| ..||..+||.++.+|++.|++++|.++|++|.. .|+.||..||+
T Consensus 128 i~~~~~~g~~~~A~~~f~~m---------------~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~ 191 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKM---------------PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFP 191 (857)
T ss_pred HHHHHhCCChHHHHHHHhcC---------------CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHH
Confidence 99999999999999999887 567888999999999999999999999999987 78999999999
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003872 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSY 320 (790)
Q Consensus 241 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 320 (790)
.++++|+..+++..+.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++|++|. .||..+|+++|.+|++.|
T Consensus 192 ~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g 267 (857)
T PLN03077 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENG 267 (857)
T ss_pred HHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999986 578889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003872 321 RMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFC 400 (790)
Q Consensus 321 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 400 (790)
++++|+++|.+|.+.|+.||..+|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+
T Consensus 268 ~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 347 (857)
T PLN03077 268 ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccc
Q 003872 401 DLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLD 480 (790)
Q Consensus 401 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 480 (790)
+|.. ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+
T Consensus 348 ~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~ 423 (857)
T PLN03077 348 RMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423 (857)
T ss_pred hCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc
Confidence 8864 588889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHH
Q 003872 481 VLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLA 560 (790)
Q Consensus 481 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 560 (790)
..+++++|..|.+. |.++++..+++.+.. ++...| ..+.
T Consensus 424 ~~~~n~Li~~y~k~---------------g~~~~A~~vf~~m~~--------------------~d~vs~------~~mi 462 (857)
T PLN03077 424 VVVANALIEMYSKC---------------KCIDKALEVFHNIPE--------------------KDVISW------TSII 462 (857)
T ss_pred hHHHHHHHHHHHHc---------------CCHHHHHHHHHhCCC--------------------CCeeeH------HHHH
Confidence 99999999887764 567888888776642 111122 1222
Q ss_pred HhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 003872 561 DQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKG 640 (790)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 640 (790)
..............+.+.+.. + ..++..+|+.++.+|++.|.++.+.+++..+.+.|+.++..++++||++|++.|
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~---~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G 538 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLL---T-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHh---C-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC
Confidence 222223333333333333321 2 357889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003872 641 YFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLF 720 (790)
Q Consensus 641 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 720 (790)
++++|..+|+.+ .||..+||++|.+|++.|+.++|.++|++|.+.+ +.||..||++++.+|++.|++++|.++|
T Consensus 539 ~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 539 RMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-VNPDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred CHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence 999999999987 5799999999999999999999999999999887 9999999999999999999999999999
Q ss_pred HHHH-hcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhHHHHHHHH
Q 003872 721 EQMR-TSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTLDFLGRE 779 (790)
Q Consensus 721 ~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l~~l~~~ 779 (790)
++|. ..|+.|+..+|++++++|++.|++++|.+++++|. +.||..+|+.|...++.
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~ 669 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRI 669 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH
Confidence 9999 68999999999999999999999999999999994 89999999998776654
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.9e-72 Score=638.45 Aligned_cols=589 Identities=19% Similarity=0.255 Sum_probs=508.6
Q ss_pred CchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003872 62 DSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEI 141 (790)
Q Consensus 62 ~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 141 (790)
+...|.++|+.+. .++..+|+.+|.+|++.|++++|+++|+.|...|+.||..||+.++.+|+..+++..+.++
T Consensus 136 ~~~~A~~~f~~m~------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~ 209 (857)
T PLN03077 136 ELVHAWYVFGKMP------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209 (857)
T ss_pred ChHHHHHHHhcCC------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHH
Confidence 4556777777662 2577888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHH
Q 003872 142 LDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQ 221 (790)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 221 (790)
+..+.+.|+.++..+++.|+.+|++.|+++.|..+|++| ..+|..+||.++.+|++.|++++|.+
T Consensus 210 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m---------------~~~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM---------------PRRDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred HHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC---------------CCCCcchhHHHHHHHHhCCCHHHHHH
Confidence 888888888888888888888888888888888888876 56778888888888888888888888
Q ss_pred HHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003872 222 VFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSG 301 (790)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 301 (790)
+|.+|.+ .|+.||..+|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 275 lf~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--- 350 (857)
T PLN03077 275 LFFTMRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--- 350 (857)
T ss_pred HHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---
Confidence 8888887 788888888888888888888888888888888888888888888888888888888888888888886
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003872 302 HEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNI 381 (790)
Q Consensus 302 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 381 (790)
.||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.
T Consensus 351 -~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 351 -TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred -CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 5778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCC
Q 003872 382 LIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGR 461 (790)
Q Consensus 382 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 461 (790)
|+.+|++.|++++|.++|++|.+. |..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|+
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence 888888888888888888888653 777888888888888888888888888875 588888888888888888888
Q ss_pred chHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccc
Q 003872 462 WDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEG 541 (790)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (790)
.+.+.+++..+.+.|+.+|..+++++|..|.+. |.++++...+...
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~---------------G~~~~A~~~f~~~------------------- 550 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC---------------GRMNYAWNQFNSH------------------- 550 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHc---------------CCHHHHHHHHHhc-------------------
Confidence 888888888888888888888888888887664 4555665554332
Q ss_pred cccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003872 542 SQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMG 621 (790)
Q Consensus 542 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 621 (790)
.++..+|+++|.+|++.|+.++|.++|++|.+.|
T Consensus 551 ----------------------------------------------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 551 ----------------------------------------------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred ----------------------------------------------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3477889999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH
Q 003872 622 VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMG-EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMY 700 (790)
Q Consensus 622 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 700 (790)
+.||..||++++.+|.+.|.+++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|. ++||..+|
T Consensus 585 ~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~----~~pd~~~~ 660 (857)
T PLN03077 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP----ITPDPAVW 660 (857)
T ss_pred CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC----CCCCHHHH
Confidence 99999999999999999999999999999998 67999999999999999999999999999999872 78999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 701 NTLINVLGKAGRFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 701 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
++|+.+|...|+.+.+....+++.+. .|+ ...|..|.+.|...|+|++|.++.+.|++.|+.+++
T Consensus 661 ~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 661 GALLNACRIHRHVELGELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999998888874 554 667778889999999999999999999999998865
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.7e-69 Score=597.71 Aligned_cols=524 Identities=17% Similarity=0.256 Sum_probs=462.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccc
Q 003872 116 VVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGT-SLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVV 194 (790)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (790)
.++...|..++..|++.|++++|.++|++|.+.|+ +++...+..++.+|.+.|.+++|..+|+.|
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M-------------- 432 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI-------------- 432 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc--------------
Confidence 45677888888888889999999999999988875 456667788888888889999998888776
Q ss_pred ccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHH
Q 003872 195 ESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTY 274 (790)
Q Consensus 195 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 274 (790)
..|+..+|+.++.+|++.|++++|.++|+.|.+ .|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 433 -~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTy 510 (1060)
T PLN03218 433 -RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF 510 (1060)
T ss_pred -CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 458888999999999999999999999999988 888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHH
Q 003872 275 NSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQY--NGLIPDTVVYNSLLNGMF 352 (790)
Q Consensus 275 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~li~~~~ 352 (790)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|+
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999889999999999999999999999999999999975 578899999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 003872 353 KSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALR 432 (790)
Q Consensus 353 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 432 (790)
+.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCCh
Q 003872 433 LVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDL 512 (790)
Q Consensus 433 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 512 (790)
++++|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+.++.||..+
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt----------------------------- 721 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST----------------------------- 721 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH-----------------------------
Confidence 999999999999999999999999999999999999999888776665544
Q ss_pred HHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHH
Q 003872 513 SEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDID 592 (790)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (790)
T Consensus 722 -------------------------------------------------------------------------------- 721 (1060)
T PLN03218 722 -------------------------------------------------------------------------------- 721 (1060)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 003872 593 MVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLG 672 (790)
Q Consensus 593 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 672 (790)
|+++|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|.+|.+.|+.||..+|++++..|.
T Consensus 722 -yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 722 -MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5567777788888999999999998889999999999999999999999999999999999999999999998887643
Q ss_pred h----c-------------------CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003872 673 K----M-------------------GRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGIN 729 (790)
Q Consensus 673 ~----~-------------------g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 729 (790)
+ . +..+.|..+|++|.+.| +.||..||+.++.++++.+..+.+..+++.|...+..
T Consensus 801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G-i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~ 879 (1060)
T PLN03218 801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG-TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADS 879 (1060)
T ss_pred HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCC
Confidence 2 1 22467999999999998 9999999999999888999999999999999988899
Q ss_pred CChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 730 PDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 730 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
|+..+|++|+++|.+. .++|+.++++|.+.|+.|+..
T Consensus 880 ~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 880 QKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred cchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999998543 478999999999999999987
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-67 Score=588.27 Aligned_cols=536 Identities=16% Similarity=0.239 Sum_probs=498.0
Q ss_pred hhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003872 65 KKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDV-VVDSETFKLLLEPCIKSGKIDFAIEILD 143 (790)
Q Consensus 65 ~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~ 143 (790)
.++...++... ..++...|..++..+++.|++++|+++|+.|.+.++ .++..++..++..|.+.|.+++|..+|+
T Consensus 355 ~~~~~~~~~~~----~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~ 430 (1060)
T PLN03218 355 NSLAAYNGGVS----GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAK 430 (1060)
T ss_pred hhHHHhccccC----CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34455555422 235677889999999999999999999999999986 4677888899999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHH
Q 003872 144 YMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVF 223 (790)
Q Consensus 144 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 223 (790)
.|.. |+..+|+.++.+|++.|+++.|.++|++|.+.+ ..||..+|+.||.+|++.|++++|.++|
T Consensus 431 ~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-----------l~pD~~tynsLI~~y~k~G~vd~A~~vf 495 (1060)
T PLN03218 431 LIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-----------LKADCKLYTTLISTCAKSGKVDAMFEVF 495 (1060)
T ss_pred HcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 8874 899999999999999999999999999999876 7899999999999999999999999999
Q ss_pred HHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh--CC
Q 003872 224 ERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKG--SG 301 (790)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~g 301 (790)
+.|.+ .|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|
T Consensus 496 ~eM~~-~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g 574 (1060)
T PLN03218 496 HEMVN-AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574 (1060)
T ss_pred HHHHH-cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC
Confidence 99998 8999999999999999999999999999999999999999999999999999999999999999999976 67
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003872 302 HEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNI 381 (790)
Q Consensus 302 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 381 (790)
+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 575 i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns 654 (1060)
T PLN03218 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654 (1060)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCC
Q 003872 382 LIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGR 461 (790)
Q Consensus 382 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 461 (790)
++.+|++.|++++|.+++++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccc
Q 003872 462 WDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEG 541 (790)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (790)
+++|.++|++|.+.|+.||..+|
T Consensus 735 ~eeAlelf~eM~~~Gi~Pd~~Ty--------------------------------------------------------- 757 (1060)
T PLN03218 735 LPKALEVLSEMKRLGLCPNTITY--------------------------------------------------------- 757 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHH---------------------------------------------------------
Confidence 99999999999998888876654
Q ss_pred cccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003872 542 SQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMG 621 (790)
Q Consensus 542 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 621 (790)
++++.+|++.|++++|.++|+.|.+.|
T Consensus 758 -----------------------------------------------------~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 758 -----------------------------------------------------SILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred -----------------------------------------------------HHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 566677888999999999999999999
Q ss_pred CCCChhhHHHHHHHHHh----c-------------------CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 003872 622 VHPVNYTYNSMMSSFVK----K-------------------GYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRAD 678 (790)
Q Consensus 622 ~~~~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 678 (790)
+.||..+|++|+..|.+ . +..+.|..+|++|.+.|+.||..||+.++.+++..+..+
T Consensus 785 i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~ 864 (1060)
T PLN03218 785 IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDAT 864 (1060)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHH
Confidence 99999999999876432 1 234679999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH
Q 003872 679 LASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVV 733 (790)
Q Consensus 679 ~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 733 (790)
.+..+++.|...+ ..|+..+|+++|+++++. .++|..+|++|...|+.|+..
T Consensus 865 ~~~~m~~~m~~~~-~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 865 LRNRLIENLGISA-DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHhccCC-CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999887766 889999999999998543 468999999999999999985
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.8e-62 Score=541.74 Aligned_cols=513 Identities=15% Similarity=0.224 Sum_probs=432.1
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDD-VVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSV 160 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (790)
.+...|+.+|..+.+.|++++|+++|+.|...+ ..|+..+|+.++.+|.+.++++.|.+++..|.+.|+.|+..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455689999999999999999999999998764 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHH
Q 003872 161 LVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYN 240 (790)
Q Consensus 161 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (790)
+.+|++.|+++.|.++|++| ..||..+||.++.+|++.|++++|.++|++|.+ .|+.|+..+|+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m---------------~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~ 228 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEM---------------PERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFV 228 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcC---------------CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHH
Confidence 99999999999999999887 557888888888888888888888888888887 78888888888
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003872 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSY 320 (790)
Q Consensus 241 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 320 (790)
.++.++++.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. ++|..+|+.+|.+|++.|
T Consensus 229 ~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g 304 (697)
T PLN03081 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHG 304 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCC
Confidence 8888888888888888888888888888888888888888888888888888888886 567888888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003872 321 RMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFC 400 (790)
Q Consensus 321 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 400 (790)
++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+|+.|+.+|++.|++++|.++|+
T Consensus 305 ~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccc
Q 003872 401 DLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLD 480 (790)
Q Consensus 401 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 480 (790)
+|.+ ||..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+
T Consensus 385 ~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~------ 454 (697)
T PLN03081 385 RMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE------ 454 (697)
T ss_pred hCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH------
Confidence 8754 477888888888888888888888888888888888888888888887777766666666655543
Q ss_pred hHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHH
Q 003872 481 VLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLA 560 (790)
Q Consensus 481 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 560 (790)
T Consensus 455 -------------------------------------------------------------------------------- 454 (697)
T PLN03081 455 -------------------------------------------------------------------------------- 454 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 003872 561 DQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKG 640 (790)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 640 (790)
+.|+.|+..+|+.++++|++.|
T Consensus 455 ----------------------------------------------------------~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 455 ----------------------------------------------------------NHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred ----------------------------------------------------------hcCCCCCccchHhHHHHHHhcC
Confidence 2467899999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 003872 641 YFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYL-DVVMYNTLINVLGKAGRFDEANML 719 (790)
Q Consensus 641 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 719 (790)
++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+. .| +..+|+.|+++|++.|++++|.++
T Consensus 477 ~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~---~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 477 LLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM---GPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred CHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC---CCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 999999998876 46799999999999999999999999999988754 44 467899999999999999999999
Q ss_pred HHHHHhcCCCCC-hHHHHHHHH---HHh----c----cCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 720 FEQMRTSGINPD-VVTFNTLIE---VNG----K----AGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 720 ~~~m~~~g~~p~-~~~~~~l~~---~~~----~----~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
++.|.+.|+... ..+|..+.. .+. . ..-++...++..+|.+.|+.||..
T Consensus 551 ~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 551 VETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 999999988643 223321110 000 0 011456678888999999999854
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-59 Score=522.06 Aligned_cols=477 Identities=19% Similarity=0.258 Sum_probs=450.7
Q ss_pred cCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHH
Q 003872 196 SLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYN 275 (790)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 275 (790)
...+...|+.++..|.+.|++++|.++|+.|....++.||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566789999999999999999999999999856688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003872 276 SLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSR 355 (790)
Q Consensus 276 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 355 (790)
.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999997 58999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003872 356 KVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVE 435 (790)
Q Consensus 356 ~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (790)
..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999965 489999999999999999999999999
Q ss_pred HHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHH
Q 003872 436 EMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEI 515 (790)
Q Consensus 436 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (790)
+|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++++.+|++. |.+++|
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~---------------G~~~~A 379 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW---------------GRMEDA 379 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC---------------CCHHHH
Confidence 99999999999999999999999999999999999999999999999999999998774 567788
Q ss_pred HHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHH
Q 003872 516 MSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVN 595 (790)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (790)
..+++.+. .++..+||
T Consensus 380 ~~vf~~m~----------------------------------------------------------------~~d~~t~n 395 (697)
T PLN03081 380 RNVFDRMP----------------------------------------------------------------RKNLISWN 395 (697)
T ss_pred HHHHHhCC----------------------------------------------------------------CCCeeeHH
Confidence 87776553 23667899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhc
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGE-KFCPTDIATYNVVIQGLGKM 674 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~ 674 (790)
++|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999986 59999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHH
Q 003872 675 GRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHY 753 (790)
Q Consensus 675 g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 753 (790)
|++++|.+++++| +..|+..+|++|+.+|...|+++.|..+++++.+ +.|+ ..+|..|+++|++.|++++|.+
T Consensus 476 G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 476 GLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred CCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 9999999998765 3789999999999999999999999999999975 4564 6799999999999999999999
Q ss_pred HHHHHHhCCCCC
Q 003872 754 FLKMMLDSGCTP 765 (790)
Q Consensus 754 ~~~~m~~~~~~p 765 (790)
++++|.+.|+.+
T Consensus 550 v~~~m~~~g~~k 561 (697)
T PLN03081 550 VVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHcCCcc
Confidence 999999999863
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.9e-32 Score=320.01 Aligned_cols=599 Identities=12% Similarity=0.014 Sum_probs=372.6
Q ss_pred HHhhcCCCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 003872 54 QVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSG 133 (790)
Q Consensus 54 ~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~ 133 (790)
..+.....++..|+..|..+.+..|. ....+..+...+...|++++|...++.+.... +.+...+..+...+.+.|
T Consensus 268 ~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 343 (899)
T TIGR02917 268 ALVDFQKKNYEDARETLQDALKSAPE---YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLG 343 (899)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCC
Confidence 33333455677788888777655543 22334445556677788888888887777654 335566677777777888
Q ss_pred ChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhc
Q 003872 134 KIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKS 213 (790)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (790)
++++|.+.++.+.... +.+...+..+...+.+.|++++|...|+++.+. .+.+...+..+...+...
T Consensus 344 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~ 410 (899)
T TIGR02917 344 RVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATEL------------DPENAAARTQLGISKLSQ 410 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHhC
Confidence 8888888887777654 345667777777788888888888888777664 233445666677777777
Q ss_pred cchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 003872 214 DRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIV 293 (790)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 293 (790)
|++++|.+.++.+.+.. +........++..+.+.|++++|..+++.+.... +.+..++..+...+...|++++|.+.
T Consensus 411 ~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 487 (899)
T TIGR02917 411 GDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREA 487 (899)
T ss_pred CChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777777776521 1223445556667777777777777777776542 33566777777777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003872 294 WEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVR 373 (790)
Q Consensus 294 ~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~ 373 (790)
|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+ +.+..++..+...+.+.|+.++|...++++...+ +
T Consensus 488 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 564 (899)
T TIGR02917 488 FEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-P 564 (899)
T ss_pred HHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 77776653 4445566667777777777777777777777653 2355667777777777777777777777776654 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003872 374 TSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLL 453 (790)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 453 (790)
.+...+..+...+...|++++|..+++.+.... +.+...|..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 642 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLA 642 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 455566677777777777777777777776653 2356667777777777777777777777776653 22556677777
Q ss_pred HHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCC
Q 003872 454 IGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSG 533 (790)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (790)
.++...|++++|...++++.+.. +.+...+..+...+.. .+..+++..++......
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~---------------~~~~~~A~~~~~~~~~~-------- 698 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLA---------------AKRTESAKKIAKSLQKQ-------- 698 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH---------------cCCHHHHHHHHHHHHhh--------
Confidence 77777777777777777776643 2223444444444433 34455565555433210
Q ss_pred CCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHH
Q 003872 534 EGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKL 613 (790)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 613 (790)
.+.++..+..+...+...|++++|...
T Consensus 699 -----------------------------------------------------~~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 699 -----------------------------------------------------HPKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred -----------------------------------------------------CcCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 112333444455555555555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 003872 614 FEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGG 693 (790)
Q Consensus 614 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 693 (790)
|+.+.+.+ |+..++..+..++.+.|++++|...++++.+. .+.+...++.+...|...|++++|.++|+++.+..
T Consensus 726 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 800 (899)
T TIGR02917 726 YRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-- 800 (899)
T ss_pred HHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--
Confidence 55555442 33344445555555555555555555555554 23345555555555555555555555555555542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 694 YLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 694 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
+.+...++.+...+...|+ .+|+.+++++.... +-+..++..+..++.+.|++++|.++++++.+.
T Consensus 801 p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 801 PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445555555555555555 55555555555431 112344455555555555555555555555544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.6e-31 Score=310.35 Aligned_cols=590 Identities=13% Similarity=0.046 Sum_probs=348.0
Q ss_pred CCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003872 61 LDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIE 140 (790)
Q Consensus 61 ~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 140 (790)
.+...|+..|..+.+..| .+...+..+...+.+.|++++|...++.+...+ +.+...+..+...+.+.|++++|.+
T Consensus 309 g~~~~A~~~~~~~~~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 384 (899)
T TIGR02917 309 GNLEQAYQYLNQILKYAP---NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAE 384 (899)
T ss_pred CCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345556666665544433 344555556666666666666666666666554 2355566666666666666666666
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHH
Q 003872 141 ILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFK 220 (790)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 220 (790)
+|+++.+.. +.+...+..+...+...|++++|...+.++.+. .+........++..+.+.|++++|.
T Consensus 385 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~ 451 (899)
T TIGR02917 385 YLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQL------------DPELGRADLLLILSYLRSGQFDKAL 451 (899)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh------------CCcchhhHHHHHHHHHhcCCHHHHH
Confidence 666666543 234455666666666666666666666666553 1222334445556666666666666
Q ss_pred HHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003872 221 QVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGS 300 (790)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 300 (790)
.+++.+.. ..+.+..++..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 452 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 528 (899)
T TIGR02917 452 AAAKKLEK--KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTI 528 (899)
T ss_pred HHHHHHHH--hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 66666654 2344555666666666666666666666666665432 23445555666666666666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003872 301 GHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHN 380 (790)
Q Consensus 301 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 380 (790)
+ +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..+...+...|++++|..+++.+.... +.+...|.
T Consensus 529 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 529 D-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL 605 (899)
T ss_pred C-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 3 3455566666666666666666666666665543 2244555566666666666666666666666543 34555666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 003872 381 ILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYG 460 (790)
Q Consensus 381 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 460 (790)
.+...+...|++++|...++.+.+... .+...+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 666666666666666666666665432 244556666666666666666666666666542 224556666666666666
Q ss_pred CchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCccc
Q 003872 461 RWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDE 540 (790)
Q Consensus 461 ~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (790)
++++|..+++.+.+... .+...+..+...+.. .+..+++...+.....
T Consensus 684 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~g~~~~A~~~~~~~~~---------------- 731 (899)
T TIGR02917 684 RTESAKKIAKSLQKQHP-KAALGFELEGDLYLR---------------QKDYPAAIQAYRKALK---------------- 731 (899)
T ss_pred CHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHH---------------CCCHHHHHHHHHHHHh----------------
Confidence 66666666666665432 222222222222221 2334444443322210
Q ss_pred ccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003872 541 GSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDM 620 (790)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 620 (790)
. .++...+..++..+.+.|++++|...++.+.+.
T Consensus 732 ---------------------------------------------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 732 ---------------------------------------------R-APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred ---------------------------------------------h-CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 0 011144555666666666666666666666655
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH
Q 003872 621 GVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMY 700 (790)
Q Consensus 621 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 700 (790)
. +.+...+..+...|...|++++|..+|+++.+.. +.+..+++.+...+...|+ .+|+.+++++.+.. +-+..++
T Consensus 766 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--~~~~~~~ 840 (899)
T TIGR02917 766 H-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA--PNIPAIL 840 (899)
T ss_pred C-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--CCCcHHH
Confidence 4 4455666666666666666666666666666653 3456666666666666666 55666666666542 2344455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 701 NTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 701 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
..+..++...|++++|..+|+++.+.+.. +..++..++.++.+.|++++|.+++++|+
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56666666666666666666666664332 56666666666666666666666666664
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=4.8e-23 Score=242.19 Aligned_cols=610 Identities=13% Similarity=0.067 Sum_probs=400.8
Q ss_pred CCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHH----------------HH
Q 003872 60 SLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSET----------------FK 123 (790)
Q Consensus 60 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~----------------~~ 123 (790)
..+++.|...+..+....| .++..+..++..+.+.|+.++|.+.++...+..+ .+... ..
T Consensus 41 ~~~~d~a~~~l~kl~~~~p---~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P-~~~~~~~~~~~~~~~~~~~~~~l 116 (1157)
T PRK11447 41 THREDLVRQSLYRLELIDP---NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP-DSNAYRSSRTTMLLSTPEGRQAL 116 (1157)
T ss_pred hCChHHHHHHHHHHHccCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHhcCCchhhHH
Confidence 4577888888888877776 4678888899999999999999999999988753 23332 23
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcch
Q 003872 124 LLLEPCIKSGKIDFAIEILDYMEELGTSLSPN-VYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVA 202 (790)
Q Consensus 124 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (790)
.+...+.+.|++++|++.|+++...+. ++.. ....+.......|+.++|+..|+++++. .+.+...
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~------------~P~~~~~ 183 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD------------YPGNTGL 183 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh------------CCCCHHH
Confidence 344567888999999999999887543 3332 1222222233458899999999998886 4445667
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCC-----------------CCc-hhhHH------------------------
Q 003872 203 CNELLVALRKSDRRSEFKQVFERLKEQKEF-----------------EFD-IYGYN------------------------ 240 (790)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~-~~~~~------------------------ 240 (790)
+..+...+...|++++|+..++++...... .+. ...+.
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 778888888999999999999887542110 000 00011
Q ss_pred ----------HHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH
Q 003872 241 ----------ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEP-NEFTH 309 (790)
Q Consensus 241 ----------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~ 309 (790)
.....+...|++++|...|++..+... .+...+..+..++.+.|++++|...|++..+..... ....|
T Consensus 264 ~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 264 QLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred hccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 112334556777777777777766532 255666667777777777777777777766542111 11111
Q ss_pred H------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003872 310 R------------IIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCW 377 (790)
Q Consensus 310 ~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 377 (790)
. .....+.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.|+++.+.. +.+..
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~ 420 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTN 420 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 1 11234556677777777777776653 2244555566667777777777777777776643 22344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--------CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHH
Q 003872 378 THNILIDGLFRNGRAEAAYTLFCDLKKKGKF--------VDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTI 449 (790)
Q Consensus 378 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 449 (790)
.+..+...+. .++.++|..+++.+...... .....+..+...+...|++++|+..+++.++.... +...+
T Consensus 421 a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~ 498 (1157)
T PRK11447 421 AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLT 498 (1157)
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 4555555553 34567776666554322100 01122444556677889999999999998876433 66777
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccc
Q 003872 450 SSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDAN 529 (790)
Q Consensus 450 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (790)
..+...|.+.|++++|...++++.+.........+...+ + +...+...+++..+.....
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al--~--------------l~~~~~~~~Al~~l~~l~~----- 557 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGL--Y--------------LSGSDRDRAALAHLNTLPR----- 557 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH--H--------------HHhCCCHHHHHHHHHhCCc-----
Confidence 888888999999999999999987643221111121111 1 1123344555554433221
Q ss_pred cCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHH
Q 003872 530 LGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNL 609 (790)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 609 (790)
..|.. -+..+...+ ....+..+...+...|+.++
T Consensus 558 ------------------~~~~~--~~~~l~~~l--------------------------~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 558 ------------------AQWNS--NIQELAQRL--------------------------QSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred ------------------hhcCh--hHHHHHHHH--------------------------hhhHHHHHHHHHHHCCCHHH
Confidence 00110 001111000 11123356777889999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 610 ACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 610 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 689 (790)
|..+++. .+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..++..|...|++++|++.++.+.+
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 9999872 25666778889999999999999999999999873 44788899999999999999999999998876
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC---ChHHHHHHHHHHhccCCHHHHHHHHHHHH-hCCC
Q 003872 690 QGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGI--NP---DVVTFNTLIEVNGKAGRLKEAHYFLKMML-DSGC 763 (790)
Q Consensus 690 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~ 763 (790)
.. +.+...+..+..++...|++++|.++++++....- .| +...+..+...+...|++++|+..+++.. ..|+
T Consensus 666 ~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 666 TA--NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred cC--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 53 33556677788889999999999999999987422 22 23466677888999999999999999986 3455
Q ss_pred CCC
Q 003872 764 TPN 766 (790)
Q Consensus 764 ~p~ 766 (790)
.|.
T Consensus 744 ~~~ 746 (1157)
T PRK11447 744 TPT 746 (1157)
T ss_pred CCC
Confidence 543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=2.1e-21 Score=228.37 Aligned_cols=610 Identities=12% Similarity=0.020 Sum_probs=357.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHH---------
Q 003872 87 YSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVY--------- 157 (790)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------- 157 (790)
.-..++.....++.+.|.+.+..+..... -++.++..++..+.+.|+.++|.+.++++.+..+ .++...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P-~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP-DSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHhc
Confidence 44566777888999999999999988763 4788999999999999999999999999998763 233322
Q ss_pred -------HHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHH-HHHHHhccchHHHHHHHHHHHhc
Q 003872 158 -------DSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNEL-LVALRKSDRRSEFKQVFERLKEQ 229 (790)
Q Consensus 158 -------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~ 229 (790)
..+...+...|++++|...|+++++. .+++...-..+ .......|+.++|++.++.+.+.
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~------------~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNG------------APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccC------------CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh
Confidence 33345688899999999999998764 23332211111 12223469999999999999974
Q ss_pred CCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCC----------------CHh---HHHHHHHHHHhcCCHHHH
Q 003872 230 KEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVP----------------DLH---TYNSLIQVLCVVGKVKDA 290 (790)
Q Consensus 230 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----------------~~~---~~~~ll~~~~~~~~~~~a 290 (790)
.+-+...+..+...+...|+.++|+..++++.+..... +.. .+...+..+-.......|
T Consensus 177 --~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A 254 (1157)
T PRK11447 177 --YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAA 254 (1157)
T ss_pred --CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHH
Confidence 34466778889999999999999999999986542110 000 011111111111223344
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 291 LIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQD 370 (790)
Q Consensus 291 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~ 370 (790)
...+.........|.... ......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+.
T Consensus 255 ~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~ 332 (1157)
T PRK11447 255 RSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALAL 332 (1157)
T ss_pred HHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444433221222211 123345566777777777777776643 225566677777777777777777777777664
Q ss_pred CCCC-CHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003872 371 GVRT-SCWTH------------NILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEM 437 (790)
Q Consensus 371 ~~~~-~~~~~------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 437 (790)
.... ....+ ......+.+.|++++|+..|+++...... +...+..+...+...|++++|++.|+++
T Consensus 333 ~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 333 DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3111 11111 11233455677777777777777766332 4555666677777777777777777777
Q ss_pred HhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHH-HHHHhhccccccccCCCCCCCCCChHHHH
Q 003872 438 EGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKAD-VEATMKSRKSKRKDYTPMFPYKGDLSEIM 516 (790)
Q Consensus 438 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (790)
.+.... +...+..+...|. .++.++|...++.+..............+ ...+.. ....+...+..+++.
T Consensus 412 L~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--------~a~~~~~~g~~~eA~ 481 (1157)
T PRK11447 412 LRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ--------QAEALENQGKWAQAA 481 (1157)
T ss_pred HHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH--------HHHHHHHCCCHHHHH
Confidence 765322 4445555555553 34566666666544321100000000000 000000 000112234444444
Q ss_pred HhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHH
Q 003872 517 SLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNT 596 (790)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (790)
..+.+..... ....| ..-.+.................+. .. ...+.++..+..
T Consensus 482 ~~~~~Al~~~-------------------P~~~~----~~~~LA~~~~~~G~~~~A~~~l~~--al--~~~P~~~~~~~a 534 (1157)
T PRK11447 482 ELQRQRLALD-------------------PGSVW----LTYRLAQDLRQAGQRSQADALMRR--LA--QQKPNDPEQVYA 534 (1157)
T ss_pred HHHHHHHHhC-------------------CCCHH----HHHHHHHHHHHcCCHHHHHHHHHH--HH--HcCCCCHHHHHH
Confidence 4443332100 00000 000000000000000000000000 00 011223333333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChh---------hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 597 FLSIFLAKGKLNLACKLFEIFTDMGVHPVNY---------TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 597 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+...+...++.++|+..++.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~L 609 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHH
Confidence 4444445555555555555543221111111 112234456667777777777661 34566677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccC
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAG 746 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g 746 (790)
...+.+.|++++|+..|+++++.. +.+...+..++.+|...|++++|++.++...+. .| +..++..+..++...|
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCC
Confidence 899999999999999999999874 456788999999999999999999999988764 34 4566778888999999
Q ss_pred CHHHHHHHHHHHHhC
Q 003872 747 RLKEAHYFLKMMLDS 761 (790)
Q Consensus 747 ~~~~A~~~~~~m~~~ 761 (790)
++++|.++++++...
T Consensus 686 ~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999999864
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.5e-19 Score=188.03 Aligned_cols=572 Identities=13% Similarity=0.045 Sum_probs=400.1
Q ss_pred chhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003872 63 SSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEIL 142 (790)
Q Consensus 63 ~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 142 (790)
.+.|..-|.++.+..| ++...+-.-..+....|++..|+.+|..+...+....+.....+...+++.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp---~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP---DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCC---cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHH
Confidence 4678888988877666 5555555555666678999999999999877654333334444557778999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHH
Q 003872 143 DYMEELGTSLSPNVYDSVLVSLVRK---KQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEF 219 (790)
Q Consensus 143 ~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 219 (790)
.+..+.++ .+..++..|.-.-... ..+..+.+.+...... ...++...+.|.+.|.-.|++..+
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~------------n~~nP~~l~~LAn~fyfK~dy~~v 289 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE------------NNENPVALNHLANHFYFKKDYERV 289 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh------------cCCCcHHHHHHHHHHhhcccHHHH
Confidence 99998653 2333443333333333 3355666666666554 566788999999999999999999
Q ss_pred HHHHHHHHhcCCCCC-chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHhcCCHHHHHHHHHH
Q 003872 220 KQVFERLKEQKEFEF-DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHT--YNSLIQVLCVVGKVKDALIVWEE 296 (790)
Q Consensus 220 ~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~ 296 (790)
+.+...+....-..+ -...|-.+.++|...|++++|...|.+..+. .++.++ +--+...+.+.|+++.+...|+.
T Consensus 290 ~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEk 367 (1018)
T KOG2002|consen 290 WHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEK 367 (1018)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHH
Confidence 999998876321111 2356788999999999999999999998876 444433 44567899999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----
Q 003872 297 LKGSGHEPNEFTHRIIIQGCCKSY----RMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMV---- 368 (790)
Q Consensus 297 ~~~~g~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~---- 368 (790)
+.+.. +-+..+...+...|...+ ..+.|..++....+.- +.|...|-.+...+... +...++..|....
T Consensus 368 v~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 368 VLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILE 444 (1018)
T ss_pred HHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHH
Confidence 98773 444566666666666654 4567777777766653 34666777766665544 4444466655443
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCH------hhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003872 369 QDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK---GKFVDG------ITFSIVVLQLCREGQIEEALRLVEEMEG 439 (790)
Q Consensus 369 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 439 (790)
..+-.+-....|.+...+...|++..|...|...... ...++. .+-..+...+-..++++.|.+.|..+.+
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4444566778899999999999999999999887665 122233 2233345555667789999999999887
Q ss_pred CCCccC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHh
Q 003872 440 RGFVVD-LVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSL 518 (790)
Q Consensus 440 ~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (790)
.. |+ ...|.-+.......++..+|...++.+.+.
T Consensus 525 eh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~------------------------------------------- 559 (1018)
T KOG2002|consen 525 EH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI------------------------------------------- 559 (1018)
T ss_pred HC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-------------------------------------------
Confidence 62 22 222333332223345666666666665542
Q ss_pred hcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHH
Q 003872 519 IGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFL 598 (790)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 598 (790)
+..++.++.-+.
T Consensus 560 --------------------------------------------------------------------d~~np~arsl~G 571 (1018)
T KOG2002|consen 560 --------------------------------------------------------------------DSSNPNARSLLG 571 (1018)
T ss_pred --------------------------------------------------------------------ccCCcHHHHHHH
Confidence 233556666666
Q ss_pred HHHHHcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHhhcCCCCCHHHHH
Q 003872 599 SIFLAKGKLNLACKLFEIFTDM-GVHPVNYTYNSMMSSFVK------------KGYFNQAWGVLNEMGEKFCPTDIATYN 665 (790)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~~~~~~~~ 665 (790)
..+.+...+..|.+-|..+.+. ...+|+.+.-+|.+.|.. .+..++|+++|.+.++.. +-|...-|
T Consensus 572 ~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAAN 650 (1018)
T KOG2002|consen 572 NLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAAN 650 (1018)
T ss_pred HHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhcc
Confidence 6777777777777766555332 223566666666665543 345778999999988874 34777778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCChHHHHHHHHHHhc
Q 003872 666 VVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS-GINPDVVTFNTLIEVNGK 744 (790)
Q Consensus 666 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~ 744 (790)
.+.-.++..|++..|..+|.+..+.. .-+..+|-.+.++|...|++..|+++|+..... +-.-+..+...|..++.+
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 88888999999999999999988874 335567888999999999999999999987763 344567888999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCccc--hhHH
Q 003872 745 AGRLKEAHYFLKMMLDSGCTPNHVT--DTTL 773 (790)
Q Consensus 745 ~g~~~~A~~~~~~m~~~~~~p~~~t--~~~l 773 (790)
+|.+.+|.+.+...... .|...+ |++.
T Consensus 729 ~~~~~eak~~ll~a~~~--~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHL--APSNTSVKFNLA 757 (1018)
T ss_pred hhhHHHHHHHHHHHHHh--CCccchHHhHHH
Confidence 99999999998888754 444433 5543
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=1.5e-18 Score=194.30 Aligned_cols=589 Identities=12% Similarity=0.030 Sum_probs=386.8
Q ss_pred HHHHHhhcCCCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 003872 51 LVLQVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCI 130 (790)
Q Consensus 51 ~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~ 130 (790)
+....+....+++..|+..|+.+.+..| .++.++..+.+.+...|++++|+..++...+.+. -|...+..+ ..+
T Consensus 48 f~~a~~~~~~Gd~~~A~~~l~~Al~~dP---~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i- 121 (987)
T PRK09782 48 LDKALKAQKNNDEATAIREFEYIHQQVP---DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI- 121 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh-
Confidence 4445555556889999999999988888 4578889999999999999999999999998863 244444443 222
Q ss_pred hcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcch
Q 003872 131 KSGKIDFAIEILDYMEELGTSLSPNVYDSVLVS--------LVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVA 202 (790)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (790)
+++.+|.++|+++.+... -+..++..+... |.+.+...++++ .+... ..|...+
T Consensus 122 --~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~-------------~~~~~~v 183 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFA-------------ASPEGKT 183 (987)
T ss_pred --ccChhHHHHHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhC-------------CCCCcHH
Confidence 999999999999999753 356666666665 666655555544 11110 2223444
Q ss_pred HHHH-HHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhc-cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 003872 203 CNEL-LVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGC-WGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQV 280 (790)
Q Consensus 203 ~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 280 (790)
.... ...|.+.+++++|++.+..+.+.. +.+......|..+|.. .++ +.+..+++. .+.-+......+...
T Consensus 184 L~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~ 256 (987)
T PRK09782 184 LRTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATA 256 (987)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHH
Confidence 4444 899999999999999999999842 3345556677778877 366 888887553 233588899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHH------------------------------HHHHHhcCCHHHHHHHH
Q 003872 281 LCVVGKVKDALIVWEELKGSGH-EPNEFTHRII------------------------------IQGCCKSYRMDDAMKIF 329 (790)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l------------------------------i~~~~~~~~~~~a~~~~ 329 (790)
|.+.|+.++|.++++++...-. .|...+|--. +..+.+.++++.+.++.
T Consensus 257 yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (987)
T PRK09782 257 LAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL 336 (987)
T ss_pred HHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9999999999999998764421 1333322222 33444555555444331
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Q 003872 330 SEMQYNGLIPDTVVYNSLLNGM--FKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK-- 405 (790)
Q Consensus 330 ~~m~~~~~~p~~~~~~~li~~~--~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 405 (790)
.+.|..... .++.. ...+...++...++.|.+.. +-+......+.-...+.|+.++|..+++.....
T Consensus 337 ------~~~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~ 407 (987)
T PRK09782 337 ------ATLPANEML--EERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQG 407 (987)
T ss_pred ------cCCCcchHH--HHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCc
Confidence 123333322 22222 23356666666666666642 224555555555667778888888888777663
Q ss_pred CCCCCHhhHHHHHHHHHHcCC---HHHH----------------------HHHHHHHHhC-CC-cc--CHHHHHHHHHHH
Q 003872 406 GKFVDGITFSIVVLQLCREGQ---IEEA----------------------LRLVEEMEGR-GF-VV--DLVTISSLLIGF 456 (790)
Q Consensus 406 ~~~~~~~~~~~ll~~~~~~g~---~~~a----------------------~~~~~~m~~~-~~-~~--~~~~~~~l~~~~ 456 (790)
...++......++..|.+.+. ...+ ...++..... +. ++ +...|..+..++
T Consensus 408 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l 487 (987)
T PRK09782 408 DARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCY 487 (987)
T ss_pred ccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHH
Confidence 122333344455555555443 2222 2222222221 11 23 566677777666
Q ss_pred HhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCC
Q 003872 457 HKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGD 536 (790)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (790)
.. ++.++|...+.+..... |+... .+..++. +...+.++++...+++...
T Consensus 488 ~~-~~~~eAi~a~~~Al~~~--Pd~~~--~L~lA~a-------------l~~~Gr~eeAi~~~rka~~------------ 537 (987)
T PRK09782 488 RD-TLPGVALYAWLQAEQRQ--PDAWQ--HRAVAYQ-------------AYQVEDYATALAAWQKISL------------ 537 (987)
T ss_pred Hh-CCcHHHHHHHHHHHHhC--CchHH--HHHHHHH-------------HHHCCCHHHHHHHHHHHhc------------
Confidence 65 77777888777766543 34322 1111111 0112334444333322110
Q ss_pred CcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003872 537 AKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEI 616 (790)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 616 (790)
.++....+..+...+.+.|++++|...++.
T Consensus 538 --------------------------------------------------~~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 538 --------------------------------------------------HDMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred --------------------------------------------------cCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 011223345667788889999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 003872 617 FTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD 696 (790)
Q Consensus 617 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 696 (790)
..+.. +.+...+..+.......|++++|...+++..+. .|+...+..+...+.+.|++++|...++++.... +.+
T Consensus 568 AL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~ 642 (987)
T PRK09782 568 AEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNN 642 (987)
T ss_pred HHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC
Confidence 88765 333333444444455569999999999999885 4577888888999999999999999999998874 446
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 697 VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 697 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
...++.+..++...|++++|+..|++..+. .| +...+..+..++...|++++|+..+++..+. .|+..
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a 711 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQA 711 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCc
Confidence 677888888899999999999999999874 34 4778889999999999999999999999854 56553
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=5.4e-17 Score=181.95 Aligned_cols=549 Identities=10% Similarity=-0.050 Sum_probs=369.9
Q ss_pred HhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003872 95 CRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAM 174 (790)
Q Consensus 95 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 174 (790)
...|++++|+..|+...+..+. +..++..+...|...|++++|+..+++..+.. |+...|..++..+ ++.++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHH
Confidence 3459999999999999998744 68889999999999999999999999999875 4444444433323 8999999
Q ss_pred HHHHHHHHHhccCCCCCcccccCCCcchHHHHHHH--------HHhccchHHHHHHHHHHHhcCCCCCchhhHHHH-HHH
Q 003872 175 SILFKLLEACNDNTADNSVVESLPGCVACNELLVA--------LRKSDRRSEFKQVFERLKEQKEFEFDIYGYNIC-IHA 245 (790)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~ 245 (790)
.+++++++. .+.+..++..+... |.+. ++|.+.++ ... ....|+..+.... ...
T Consensus 129 ~~ye~l~~~------------~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~-~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 129 TTVEELLAQ------------QKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DAT-FAASPEGKTLRTDLLQR 191 (987)
T ss_pred HHHHHHHHh------------CCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hhh-hCCCCCcHHHHHHHHHH
Confidence 999999986 44455666666655 6665 44444444 222 2233344444444 899
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003872 246 FGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCV-VGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDD 324 (790)
Q Consensus 246 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 324 (790)
|.+.|++++|+.++.++.+.+.. +..-...+..+|.. .++ +.+..+++. .++.+...+..+...|.+.|+.++
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKAR 265 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999998644 45556667778887 366 778777553 234678899999999999999999
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHH------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003872 325 AMKIFSEMQYNGLI-PDTVVYNSL------------------------------LNGMFKSRKVMEACQLFEKMVQDGVR 373 (790)
Q Consensus 325 a~~~~~~m~~~~~~-p~~~~~~~l------------------------------i~~~~~~~~~~~a~~l~~~~~~~~~~ 373 (790)
|.+++.++...-.. |...++..+ +..+.+.++++.++++.. +.
T Consensus 266 A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 339 (987)
T PRK09782 266 LQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TL 339 (987)
T ss_pred HHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CC
Confidence 99999987533211 333332221 344455555554444421 34
Q ss_pred CCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CccCHHHH
Q 003872 374 TSCWTHNILIDGL--FRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGR-G-FVVDLVTI 449 (790)
Q Consensus 374 ~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~-~~~~~~~~ 449 (790)
|.... ..++.. ...+...++...+..|.+.... +......+.-...+.|+.++|..+++..... + -.++....
T Consensus 340 ~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 416 (987)
T PRK09782 340 PANEM--LEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLM 416 (987)
T ss_pred CcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHH
Confidence 44443 233332 2346777888888888776322 4444444555567899999999999998773 2 23345555
Q ss_pred HHHHHHHHhcCC-------------------------chHHHHHHHHHHhC-CCccc---hHhHHHHHHHHhhccccccc
Q 003872 450 SSLLIGFHKYGR-------------------------WDFTERLMKHIRDG-NLVLD---VLKWKADVEATMKSRKSKRK 500 (790)
Q Consensus 450 ~~l~~~~~~~g~-------------------------~~~a~~~~~~~~~~-~~~~~---~~~~~~~i~~~~~~~~~~~~ 500 (790)
.-++..|.+.+. ..++...+...... ...|+ ...|..+-..+..
T Consensus 417 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~------- 489 (987)
T PRK09782 417 ARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD------- 489 (987)
T ss_pred HHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-------
Confidence 577777776654 22222223333221 11122 2222222211111
Q ss_pred cCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHh
Q 003872 501 DYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLR 580 (790)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 580 (790)
+...+++..+.+.. .
T Consensus 490 ---------~~~~eAi~a~~~Al--------------------------------------------------------~ 504 (987)
T PRK09782 490 ---------TLPGVALYAWLQAE--------------------------------------------------------Q 504 (987)
T ss_pred ---------CCcHHHHHHHHHHH--------------------------------------------------------H
Confidence 11222222111110 0
Q ss_pred HhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 003872 581 VQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD 660 (790)
Q Consensus 581 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 660 (790)
.. + +......+...+...|++++|...|+.+... +|+...+..+...+.+.|++++|...+++..+.. +.+
T Consensus 505 ~~-----P-d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~ 575 (987)
T PRK09782 505 RQ-----P-DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGD 575 (987)
T ss_pred hC-----C-chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Ccc
Confidence 00 1 1112334455557899999999999998654 4555667777888999999999999999998864 233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHH
Q 003872 661 IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLI 739 (790)
Q Consensus 661 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~ 739 (790)
...+..+...+...|++++|...+++.++. .|+...|..+..++.+.|++++|...|++.... .| +...++.+.
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG 650 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALG 650 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 334444444555669999999999999985 467889999999999999999999999999985 44 467788888
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 003872 740 EVNGKAGRLKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 740 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 769 (790)
.++...|++++|+..+++..+. .|+...
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l--~P~~~~ 678 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKG--LPDDPA 678 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHH
Confidence 9999999999999999999864 666544
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.8e-17 Score=171.39 Aligned_cols=587 Identities=13% Similarity=0.053 Sum_probs=380.3
Q ss_pred hcCCCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHH---hcC
Q 003872 57 GKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCI---KSG 133 (790)
Q Consensus 57 ~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~---~~~ 133 (790)
.-...+...|+.+|+.+....|.+++++.. .+-..+.+.++.+.|+..|..+.+.++ -++.++..|...-. ...
T Consensus 174 ~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~ 250 (1018)
T KOG2002|consen 174 AYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSD 250 (1018)
T ss_pred HhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchH
Confidence 345678899999999998889998888865 344677889999999999999998864 34444444333322 234
Q ss_pred ChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhc
Q 003872 134 KIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKS 213 (790)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (790)
.+..+.+++...-..+ +-+|.+.+.|...|.-.|+++.+..+...++..... ..--...|..+.++|...
T Consensus 251 s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~---------~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN---------KSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh---------hHHHHHHHHHHHHHHHhh
Confidence 5667777777776654 358889999999999999999999999988775310 112245688899999999
Q ss_pred cchHHHHHHHHHHHhcCCCCCc--hhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC----CH
Q 003872 214 DRRSEFKQVFERLKEQKEFEFD--IYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVG----KV 287 (790)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~ 287 (790)
|++++|...|.+..+ ..++ +..+--+...|.+.|+++.+...|+...+.. +-+..+...|...|...+ ..
T Consensus 321 Gd~ekA~~yY~~s~k---~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~ 396 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLK---ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKR 396 (1018)
T ss_pred ccHHHHHHHHHHHHc---cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHH
Confidence 999999999988875 2334 3445567889999999999999999998873 225667777777777764 46
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003872 288 KDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSE----MQYNGLIPDTVVYNSLLNGMFKSRKVMEACQL 363 (790)
Q Consensus 288 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l 363 (790)
+.|..++.+..+.- +.|...|-.+...+-...- ..++..|.. +...+-.+.....|.+.......|++++|...
T Consensus 397 d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~ 474 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEH 474 (1018)
T ss_pred HHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHH
Confidence 78888888877664 6677788777777765444 334666654 34556567888899999999999999999999
Q ss_pred HHHHHHC---CCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 003872 364 FEKMVQD---GVR------TSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLV 434 (790)
Q Consensus 364 ~~~~~~~---~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 434 (790)
|+..... ... ++..+-..+...+-..++.+.|.+.|..+.+..+. -...|-.+.......+...+|...+
T Consensus 475 f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 475 FKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHH
Confidence 9988764 111 22223334555566678999999999999887322 2333444443444567888999999
Q ss_pred HHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCc-cchHhHHHHHHHHhhccccccccCCCCCCCCCChH
Q 003872 435 EEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLV-LDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLS 513 (790)
Q Consensus 435 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (790)
.+.... ...++..++.+...+.+...+..|..-|..+.+.-.. +|.++.-++=..++....
T Consensus 554 k~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~----------------- 615 (1018)
T KOG2002|consen 554 KDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH----------------- 615 (1018)
T ss_pred HHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc-----------------
Confidence 998875 3346667777777888888887777766655543211 232221111110000000
Q ss_pred HHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHH
Q 003872 514 EIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDM 593 (790)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (790)
.|+. ++
T Consensus 616 -----------------------------------~~~r-------------------------------------n~-- 621 (1018)
T KOG2002|consen 616 -----------------------------------NPSR-------------------------------------NP-- 621 (1018)
T ss_pred -----------------------------------cccc-------------------------------------Ch--
Confidence 0000 00
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK 673 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 673 (790)
-...+..++|+++|...+... +-|...-|-+.-.++..|++.+|..+|.+..+... -+..+|-.+.++|..
T Consensus 622 -------ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 622 -------EKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVE 692 (1018)
T ss_pred -------HHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHH
Confidence 011234455666666555543 34444445555555566666666666666655432 133455555666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH------------
Q 003872 674 MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEV------------ 741 (790)
Q Consensus 674 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~------------ 741 (790)
.|++..|+++|+...+...-.-+......|..++..+|.+.+|.+.+.........-..+.||..+-.
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k 772 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK 772 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc
Confidence 66666666666666555433345555556666666666666666665555543222223333332211
Q ss_pred ------HhccCCHHHHHHHHHHHHhCCCC
Q 003872 742 ------NGKAGRLKEAHYFLKMMLDSGCT 764 (790)
Q Consensus 742 ------~~~~g~~~~A~~~~~~m~~~~~~ 764 (790)
....+..++|.++|..|...+-.
T Consensus 773 ~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 12223467888899888866544
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1e-18 Score=172.48 Aligned_cols=437 Identities=14% Similarity=0.040 Sum_probs=303.0
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 003872 203 CNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLC 282 (790)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 282 (790)
...|.....+.|++.+|++.....-.+. +.+....-.+-..+.+..+.+....--....+.. +.-..+|..+...+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 4456666677788888877766554321 1122223333344555555555544333333332 235677888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHH
Q 003872 283 VVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNS-LLNGMFKSRKVMEAC 361 (790)
Q Consensus 283 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~~~~~~a~ 361 (790)
..|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+..+. .|+..-..+ +-...-..|++++|.
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 8888888888888887763 334667777888888888888888888777764 455443322 233334467778888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003872 362 QLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRG 441 (790)
Q Consensus 362 ~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 441 (790)
..|.+..+.. +--...|+.|...+-.+|+...|+..|++..+.... =...|-.|-..|...+.++.|...+.+.....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 7777776643 123456777777777888888888888887776322 23457777777888888888888887776542
Q ss_pred CccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcC
Q 003872 442 FVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGS 521 (790)
Q Consensus 442 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (790)
.. ....+..+...|...|.+|.|...+++..+.
T Consensus 283 pn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~---------------------------------------------- 315 (966)
T KOG4626|consen 283 PN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL---------------------------------------------- 315 (966)
T ss_pred Cc-chhhccceEEEEeccccHHHHHHHHHHHHhc----------------------------------------------
Confidence 22 4566667777777888888888888877652
Q ss_pred CccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHH
Q 003872 522 TNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIF 601 (790)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 601 (790)
.|.-+++|+.+..++
T Consensus 316 -----------------------------------------------------------------~P~F~~Ay~NlanAL 330 (966)
T KOG4626|consen 316 -----------------------------------------------------------------QPNFPDAYNNLANAL 330 (966)
T ss_pred -----------------------------------------------------------------CCCchHHHhHHHHHH
Confidence 233466788888888
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003872 602 LAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLAS 681 (790)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 681 (790)
-..|++.+|...++...... +......+-|...|...|.+++|..+|....+.. +--...+|.|...|-++|++++|+
T Consensus 331 kd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 331 KDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred HhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHH
Confidence 88888888888888887764 4456677778888888888888888888877752 223456777888888888888888
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 682 TILDKLMKQGGGYLD-VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 682 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
..+++.++ ++|+ ...|+.+...|-..|+.+.|.+.+.+... +.|. ...++.|...|-.+|+..+|+.-++..+
T Consensus 409 ~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 409 MCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 88888776 4565 45777888888888888888888888876 4566 5677888888888888888888888887
Q ss_pred hCCCCCCcc
Q 003872 760 DSGCTPNHV 768 (790)
Q Consensus 760 ~~~~~p~~~ 768 (790)
+ +.||-.
T Consensus 484 k--lkPDfp 490 (966)
T KOG4626|consen 484 K--LKPDFP 490 (966)
T ss_pred c--cCCCCc
Confidence 4 466543
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=1.8e-18 Score=170.65 Aligned_cols=471 Identities=12% Similarity=0.048 Sum_probs=342.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCch
Q 003872 157 YDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDI 236 (790)
Q Consensus 157 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (790)
...|..-..+.|++..|++....+.... +.+....-.+-..+.+..+.+....--.... ...+.-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d------------~t~~~~llll~ai~~q~~r~d~s~a~~~~a~--r~~~q~a 116 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED------------PTNTERLLLLSAIFFQGSRLDKSSAGSLLAI--RKNPQGA 116 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC------------CCcccceeeehhhhhcccchhhhhhhhhhhh--hccchHH
Confidence 3444455556677777776665554431 1122222222334445555554433322222 1233356
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-H
Q 003872 237 YGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQ-G 315 (790)
Q Consensus 237 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~-~ 315 (790)
.+|..+...+-..|++++|+.+|+.+.+.... ....|-.+..++...|+.+.|.+.|.+..+. .|+.....+-+. .
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHH
Confidence 78888888888889999999999998887432 5677888888888899999999988888765 566555444443 3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHH
Q 003872 316 CCKSYRMDDAMKIFSEMQYNGLIPD-TVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTS-CWTHNILIDGLFRNGRAE 393 (790)
Q Consensus 316 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~ 393 (790)
+...|++++|...+.+..+. .|. ...|..|...+-..|+...|++-|++..+.. |+ ...|-.|...|...+.++
T Consensus 194 lka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcch
Confidence 44568888888888887765 233 3467777778888899999999999888753 33 567888888888899999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 003872 394 AAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIR 473 (790)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (790)
+|...+.+....... ....+..+...|..+|..|.|+..+++.++.... -...|+.|..++...|++.+|.+.+.+..
T Consensus 270 ~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 999888887765322 4566777888888999999999999998876332 36789999999999999999999998877
Q ss_pred hCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCC
Q 003872 474 DGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSS 553 (790)
Q Consensus 474 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (790)
.-
T Consensus 348 ~l------------------------------------------------------------------------------ 349 (966)
T KOG4626|consen 348 RL------------------------------------------------------------------------------ 349 (966)
T ss_pred Hh------------------------------------------------------------------------------
Confidence 62
Q ss_pred hhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 003872 554 PYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMM 633 (790)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 633 (790)
.+..++..+.|...|...|.+++|..+|....+-. +-=...++-|.
T Consensus 350 ---------------------------------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa 395 (966)
T KOG4626|consen 350 ---------------------------------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLA 395 (966)
T ss_pred ---------------------------------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHH
Confidence 12356677889999999999999999999887653 22345678899
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 003872 634 SSFVKKGYFNQAWGVLNEMGEKFCPTD-IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD-VVMYNTLINVLGKAG 711 (790)
Q Consensus 634 ~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 711 (790)
..|-..|++++|+.-+++.++- .|+ ...|+.+...|...|+++.|.+.+.+++.-+ |. ....+.|..+|-.+|
T Consensus 396 ~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n---Pt~AeAhsNLasi~kDsG 470 (966)
T KOG4626|consen 396 SIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN---PTFAEAHSNLASIYKDSG 470 (966)
T ss_pred HHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC---cHHHHHHhhHHHHhhccC
Confidence 9999999999999999999984 565 5688999999999999999999999998753 43 457888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCC-------HHHHHHHHHHHHhCCCCCCccc
Q 003872 712 RFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGR-------LKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 712 ~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~t 769 (790)
++.+|++-|++... ++|| ...|..++.++.--.+ +++..++..+-.+...-|...-
T Consensus 471 ni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP 534 (966)
T KOG4626|consen 471 NIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHP 534 (966)
T ss_pred CcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCc
Confidence 99999999999987 5777 4556666665544333 3445555555554444444444
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.1e-18 Score=183.46 Aligned_cols=304 Identities=14% Similarity=0.138 Sum_probs=197.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCCH
Q 003872 351 MFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVD---GITFSIVVLQLCREGQI 427 (790)
Q Consensus 351 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~ 427 (790)
+...|++++|...|.++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++ ...+..+...|...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345566666666666666543 22344555666666666666666666666655422211 13455666666667777
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCC
Q 003872 428 EEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFP 507 (790)
Q Consensus 428 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 507 (790)
+.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------------------- 176 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR-------------------------- 176 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch--------------------------
Confidence 77777777766542 234566666777777777777777777666542211000
Q ss_pred CCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCC
Q 003872 508 YKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMG 587 (790)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (790)
T Consensus 177 -------------------------------------------------------------------------------- 176 (389)
T PRK11788 177 -------------------------------------------------------------------------------- 176 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
......+..++..+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|..+++++.+.+......+++.+
T Consensus 177 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 255 (389)
T PRK11788 177 VEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL 255 (389)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH
Confidence 0011234456666777788888888888777654 334556677777888888888888888888765332224567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc---
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGK--- 744 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~--- 744 (790)
+.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+..
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccC
Confidence 88888888888888888887765 355566677788888888888888888877764 6777777777776654
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 745 AGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 745 ~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
.|+.++++.++++|.+.++.|++.
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCC
Confidence 457788888888888766666654
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=1.4e-18 Score=182.54 Aligned_cols=308 Identities=15% Similarity=0.102 Sum_probs=204.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHH
Q 003872 317 CKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTS---CWTHNILIDGLFRNGRAE 393 (790)
Q Consensus 317 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~ 393 (790)
...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455555555555555442 11333455555555555555555555555554321111 134555566666666666
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccC----HHHHHHHHHHHHhcCCchHHHHHH
Q 003872 394 AAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVD----LVTISSLLIGFHKYGRWDFTERLM 469 (790)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 469 (790)
.|..+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+...|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666665542 22455566666666666666666666666665543221 123445566667777778887777
Q ss_pred HHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCC
Q 003872 470 KHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDE 549 (790)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (790)
+++.+..
T Consensus 204 ~~al~~~------------------------------------------------------------------------- 210 (389)
T PRK11788 204 KKALAAD------------------------------------------------------------------------- 210 (389)
T ss_pred HHHHhHC-------------------------------------------------------------------------
Confidence 7766521
Q ss_pred CCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhH
Q 003872 550 WSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTY 629 (790)
Q Consensus 550 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 629 (790)
+.+...+..++..|.+.|++++|.++|+++.+.+......++
T Consensus 211 --------------------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 211 --------------------------------------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred --------------------------------------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 112334556777888888888888888888765422224567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003872 630 NSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK 709 (790)
Q Consensus 630 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 709 (790)
+.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhh
Confidence 88889999999999999999998886 356666788899999999999999999998875 4888888888887775
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCH
Q 003872 710 ---AGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL 748 (790)
Q Consensus 710 ---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 748 (790)
.|+.+++..++++|.+.++.|++. ..|.+.|-.
T Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 328 EAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred ccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 568899999999999887777776 346666654
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1.9e-16 Score=175.05 Aligned_cols=432 Identities=14% Similarity=0.010 Sum_probs=293.0
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003872 202 ACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVL 281 (790)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 281 (790)
.+......+.+.|++++|+..|+...+ +.|+...|..+..+|.+.|++++|+..++...+.... +...+..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 455667778888888888888888775 4567777888888888888888888888888876322 456777788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEAC 361 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 361 (790)
...|++++|...|......+ ..+......++..+.. ..+........+.. +++...+..+.. +..........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcch
Confidence 88888888888877665443 1122222222222211 12222233332221 111112222211 22111111111
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHH---HHHcCCHHHHHHHHHHHHhCC-CCC-CHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003872 362 QLFEKMVQDGVRTSC-WTHNILIDG---LFRNGRAEAAYTLFCDLKKKG-KFV-DGITFSIVVLQLCREGQIEEALRLVE 435 (790)
Q Consensus 362 ~l~~~~~~~~~~~~~-~~~~~li~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (790)
.-+....+. .+.. ..+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|+..++
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111111111 1110 111111111 123468999999999988764 223 34567777888889999999999999
Q ss_pred HHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHH
Q 003872 436 EMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEI 515 (790)
Q Consensus 436 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (790)
+.++.... ....|..+...+...|++++|...++++.+.
T Consensus 356 kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---------------------------------------- 394 (615)
T TIGR00990 356 KSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKL---------------------------------------- 394 (615)
T ss_pred HHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------------------------
Confidence 99876322 4667888888899999999999999988762
Q ss_pred HHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHH
Q 003872 516 MSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVN 595 (790)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (790)
.+.++.++.
T Consensus 395 -----------------------------------------------------------------------~p~~~~~~~ 403 (615)
T TIGR00990 395 -----------------------------------------------------------------------NSEDPDIYY 403 (615)
T ss_pred -----------------------------------------------------------------------CCCCHHHHH
Confidence 233567788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMG 675 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 675 (790)
.+...+...|++++|...|+...+.. +.+...+..+...+.+.|++++|+..|++..+. .+.+...++.+...+...|
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcc
Confidence 88999999999999999999998875 456777888888999999999999999999876 3456788999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCC----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHH
Q 003872 676 RADLASTILDKLMKQGGGYL----DVV-MYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKE 750 (790)
Q Consensus 676 ~~~~A~~~~~~~~~~~~~~p----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 750 (790)
++++|++.|++.++...-.. +.. .++.....+...|++++|.+++++..... +.+...+..+..++.+.|++++
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 99999999999887531100 111 11222223344699999999999988753 2235678899999999999999
Q ss_pred HHHHHHHHHhC
Q 003872 751 AHYFLKMMLDS 761 (790)
Q Consensus 751 A~~~~~~m~~~ 761 (790)
|++++++..+.
T Consensus 561 Ai~~~e~A~~l 571 (615)
T TIGR00990 561 ALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=3.7e-16 Score=172.83 Aligned_cols=430 Identities=13% Similarity=-0.038 Sum_probs=301.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCch
Q 003872 157 YDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDI 236 (790)
Q Consensus 157 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (790)
+......+.+.|+++.|+..|.+.++ ..|+...|..+..+|.+.|++++|++.++...+. -+.+.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~-------------~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~ 194 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE-------------CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYS 194 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-------------cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCH
Confidence 45566778899999999999999887 4566778899999999999999999999999862 23356
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003872 237 YGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGC 316 (790)
Q Consensus 237 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 316 (790)
..|..+..+|...|++++|..-|......+...+.. ...++..+.. ..+........+.. +.+...+..+. .|
T Consensus 195 ~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~-~~ 267 (615)
T TIGR00990 195 KALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVG-NY 267 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHH-HH
Confidence 788999999999999999999888776553222222 1222222111 12223333332221 22222222222 22
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcC
Q 003872 317 CKSYRMDDAMKIFSEMQYNGLIPDT-VVYNSLLNG---MFKSRKVMEACQLFEKMVQDG-VRT-SCWTHNILIDGLFRNG 390 (790)
Q Consensus 317 ~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~---~~~~~~~~~a~~l~~~~~~~~-~~~-~~~~~~~li~~~~~~~ 390 (790)
...........-+....+ ..+.. ..+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|
T Consensus 268 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 268 LQSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred HHHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 222111212111221111 11111 111111111 123468899999999998764 223 4566778888888999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHH
Q 003872 391 RAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMK 470 (790)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 470 (790)
++++|+..+++..+.... +...|..+...+...|++++|...++++.+... -+...+..+...+...|++++|...|+
T Consensus 346 ~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 346 KHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred CHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999887432 456788888889999999999999999987643 367888999999999999999999999
Q ss_pred HHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCC
Q 003872 471 HIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEW 550 (790)
Q Consensus 471 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (790)
+..+.
T Consensus 424 kal~l--------------------------------------------------------------------------- 428 (615)
T TIGR00990 424 KSIDL--------------------------------------------------------------------------- 428 (615)
T ss_pred HHHHc---------------------------------------------------------------------------
Confidence 88762
Q ss_pred CCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHH
Q 003872 551 SSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYN 630 (790)
Q Consensus 551 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 630 (790)
.+.+...+..+...+.+.|++++|+..|+...+.. +.+...|+
T Consensus 429 ------------------------------------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~ 471 (615)
T TIGR00990 429 ------------------------------------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYN 471 (615)
T ss_pred ------------------------------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 12345556678888999999999999999988764 55678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 631 SMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIA------TYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLI 704 (790)
Q Consensus 631 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li 704 (790)
.+...+...|++++|+..|++........+.. .++..+..+...|++++|.+++++..... +.+...+..+.
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la 549 (615)
T TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMA 549 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 99999999999999999999988763221111 12222233445699999999999988763 33556788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 003872 705 NVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 705 ~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
.++...|++++|.++|++..+.
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=4.4e-16 Score=171.22 Aligned_cols=338 Identities=13% Similarity=0.061 Sum_probs=273.6
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLV 162 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (790)
+..-...++..+.+.|++++|..+++........ +...+..++.++...|+++.|++.|+++.... +.+...+..+..
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~ 118 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVAS 118 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3344556778888999999999999999987644 56667777778888999999999999999875 346778999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHH
Q 003872 163 SLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNIC 242 (790)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 242 (790)
.+...|++++|...++++++. .+.+...+..+...+...|++++|...++.+..... .+...+..+
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l------------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P--~~~~a~~~~ 184 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLA------------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP--PRGDMIATC 184 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHh------------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC--CCHHHHHHH
Confidence 999999999999999999885 455567888899999999999999999998875322 233333333
Q ss_pred HHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003872 243 IHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRM 322 (790)
Q Consensus 243 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 322 (790)
..+...|++++|...++.+.+....++...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 185 -~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 185 -LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRS 262 (656)
T ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCc
Confidence 3477889999999999998877544455556666788899999999999999998775 55677888899999999999
Q ss_pred HH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003872 323 DD----AMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTL 398 (790)
Q Consensus 323 ~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 398 (790)
++ |...|++..+.. +.+...+..+...+...|++++|...+++..... +.+...+..+...+.+.|++++|+..
T Consensus 263 ~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~ 340 (656)
T PRK15174 263 REAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDE 340 (656)
T ss_pred hhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 86 899999988763 2356788889999999999999999999999864 33566777888999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003872 399 FCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRG 441 (790)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 441 (790)
++.+...+.. +...+..+..++...|++++|...|++..+..
T Consensus 341 l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 341 FVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999876432 22334445677889999999999999988764
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=2.1e-15 Score=165.91 Aligned_cols=334 Identities=12% Similarity=0.060 Sum_probs=243.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 238 GYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCC 317 (790)
Q Consensus 238 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 317 (790)
....++..+.+.|+++.|..+++........ +...+..++.+....|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3445667777888888888888888877444 34445555566667888888888888888764 445667777778888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003872 318 KSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYT 397 (790)
Q Consensus 318 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 397 (790)
..|++++|...+++..... +.+...+..+...+...|+.++|...++.+...... +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 8888888888888888652 224566777888888888888888888877665322 23333333 34777888888888
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchH----HHHHHHHHH
Q 003872 398 LFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDF----TERLMKHIR 473 (790)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~ 473 (790)
.++.+......++...+..+...+...|++++|...++++.+.... +...+..+...+...|++++ |...++++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 8888777644334445555567778888888888888888876433 56777778888888888875 677777665
Q ss_pred hCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCC
Q 003872 474 DGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSS 553 (790)
Q Consensus 474 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (790)
+.
T Consensus 278 ~l------------------------------------------------------------------------------ 279 (656)
T PRK15174 278 QF------------------------------------------------------------------------------ 279 (656)
T ss_pred hh------------------------------------------------------------------------------
Confidence 52
Q ss_pred hhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 003872 554 PYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMM 633 (790)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 633 (790)
.|.++.++..+...+...|++++|...++...+.. +.+...+..+.
T Consensus 280 ---------------------------------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La 325 (656)
T PRK15174 280 ---------------------------------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYA 325 (656)
T ss_pred ---------------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 23356677788888888888888888888887765 44556677778
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 634 SSFVKKGYFNQAWGVLNEMGEKFCPTDI-ATYNVVIQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 634 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
.++.+.|++++|+..++.+.... |+. ..+..+..++...|+.++|...|+++.+..
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 88888888888888888887753 333 334445667788888888888888887764
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.3e-14 Score=137.46 Aligned_cols=324 Identities=17% Similarity=0.176 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC--ChhHHH-HHHHHHHHHhccCCCCCccccc
Q 003872 120 ETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKK--QLGLAM-SILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~-~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
.+=+.|+.. ...|.+.++.-+|+.|.+.|.+.++.+-..|+..-+-.+ ++.-|. +.|-.+...+.+
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~---------- 185 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED---------- 185 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc----------
Confidence 344555544 467899999999999999999889888777776644433 333221 223333222111
Q ss_pred CCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 197 LPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 197 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
+..+| +.|... .-+|+.. +.+..+|.++|.+.|+--..+.|.+++++......+.+..+||.
T Consensus 186 --S~~sW--------K~G~vA--dL~~E~~------PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~ 247 (625)
T KOG4422|consen 186 --STSSW--------KSGAVA--DLLFETL------PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNG 247 (625)
T ss_pred --ccccc--------ccccHH--HHHHhhc------CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhh
Confidence 11111 222222 2233332 23678899999999999999999999999988888889999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDD----AMKIFSEMQYNGLIPDTVVYNSLLNGMF 352 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~ 352 (790)
+|.+-.-..+ .++..+|....+.||..|+|+++.+..+.|+++. |.+++.+|++-|+.|...+|..+|..++
T Consensus 248 lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~ 323 (625)
T KOG4422|consen 248 LIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFK 323 (625)
T ss_pred hhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhc
Confidence 9876554332 7888889888889999999999999999998765 5678888999999999999999999988
Q ss_pred hcCCHHH-HHHHHHHHHH----CCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC---HhhHHH
Q 003872 353 KSRKVME-ACQLFEKMVQ----DGVRT----SCWTHNILIDGLFRNGRAEAAYTLFCDLKKKG----KFVD---GITFSI 416 (790)
Q Consensus 353 ~~~~~~~-a~~l~~~~~~----~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ 416 (790)
+.++..+ +..++.++.. +.++| +...|...+..|.+..+.+-|.++-.-+.... +.|+ ..-|..
T Consensus 324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~ 403 (625)
T KOG4422|consen 324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRK 403 (625)
T ss_pred ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHH
Confidence 8887644 4444444332 22332 44556677788888888888888766554331 2233 233677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 003872 417 VVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGN 476 (790)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 476 (790)
+....|+....+.....|+.|.-.-+-|+..+...++++....|.++-..+++..+...|
T Consensus 404 ~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 404 FFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 888888899999999999999988888899999999999999999999999988887754
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=3.6e-15 Score=167.81 Aligned_cols=372 Identities=10% Similarity=0.030 Sum_probs=214.2
Q ss_pred CcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003872 81 KHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSV 160 (790)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (790)
..++.-..-.+.+....|+.++|+++|....... +.+...+..+...+...|++++|.++|++..+.. +.++..+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3566666667788888899999999988887633 4466678888888899999999999999888764 3456777788
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHH
Q 003872 161 LVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYN 240 (790)
Q Consensus 161 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (790)
..++...|++++|+..++++++. .+.+.. +..+...+...|+.++|...++++.+. .+.+...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~------------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~ 154 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSG------------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPT 154 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh------------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 88888899999999988888875 344445 777777888888888888888888762 233455556
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCH------hHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCC
Q 003872 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDL------HTYNSLIQVLC-----VVGKV---KDALIVWEELKGS-GHEPN 305 (790)
Q Consensus 241 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-g~~~~ 305 (790)
.+...+...|..+.|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 667777777888888887776553 2221 01111111111 11122 4556666665532 11121
Q ss_pred HH-HH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CH
Q 003872 306 EF-TH----RIIIQGCCKSYRMDDAMKIFSEMQYNGLI-PDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRT---SC 376 (790)
Q Consensus 306 ~~-~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~---~~ 376 (790)
.. .+ ...+.++...+++++|...|+.+.+.+.. |+. ....+...|...|++++|+..|+.+....... ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 11 11 01122334556666666666666654321 221 11123445666666666666666655432100 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CCCH---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003872 377 WTHNILIDGLFRNGRAEAAYTLFCDLKKKGK-----------FVDG---ITFSIVVLQLCREGQIEEALRLVEEMEGRGF 442 (790)
Q Consensus 377 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 442 (790)
.....+..++...|++++|..+++.+..... .|+. ..+..+...+...|++++|+.+++++....
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~- 389 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA- 389 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 2344444455666666666666666554421 0111 122333444444555555555555554432
Q ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 003872 443 VVDLVTISSLLIGFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 443 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (790)
+-+...+..+...+...|++++|++.+++..+
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22344444444455555555555555544443
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=6.3e-15 Score=165.91 Aligned_cols=427 Identities=11% Similarity=-0.009 Sum_probs=247.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccccc
Q 003872 117 VDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
.++....-.+......|+.++|++++.+..... +.+...+..+..++.+.|++++|...++++++. .
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~------------~ 79 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL------------E 79 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------C
Confidence 345555555666666677777776666665522 234445666666666666666666666666553 2
Q ss_pred CCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 197 LPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 197 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
+.+...+..+...+...|++++|...+++..+. .+.+.. +..+..++...|+.++|+..++++.+..+. +...+..
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~ 155 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTE 155 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 333444445555555555555555555555542 222333 555555555555555555555555554222 2333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGM----- 351 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----- 351 (790)
+..++...+..+.|++.++.... .|+. ..-+ .. .....++...
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~---~p~~---~~~l-------~~-------------------~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL---TPAE---KRDL-------EA-------------------DAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC---CHHH---HHHH-------HH-------------------HHHHHHHHhhccccc
Confidence 44444455555555555544432 1210 0000 00 0011111111
Q ss_pred HhcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHH
Q 003872 352 FKSRKV---MEACQLFEKMVQD-GVRTSCW-TH----NILIDGLFRNGRAEAAYTLFCDLKKKGKF-VDGITFSIVVLQL 421 (790)
Q Consensus 352 ~~~~~~---~~a~~l~~~~~~~-~~~~~~~-~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~ 421 (790)
...+++ ++|+..++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+...|
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 111223 6677777777753 1122211 11 11133456778899999999998877532 322 222246678
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcc---CHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccc
Q 003872 422 CREGQIEEALRLVEEMEGRGFVV---DLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSK 498 (790)
Q Consensus 422 ~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 498 (790)
...|++++|...|+++.+..... .......+..++...|++++|...++.+.+.... ....+.
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~-~~~~~~------------- 348 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP-FLRLYG------------- 348 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc-eEeecC-------------
Confidence 88999999999999887653221 1345666777788999999999999888763211 000000
Q ss_pred cccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHh
Q 003872 499 RKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARG 578 (790)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 578 (790)
T Consensus 349 -------------------------------------------------------------------------------- 348 (765)
T PRK10049 349 -------------------------------------------------------------------------------- 348 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 003872 579 LRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP 658 (790)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 658 (790)
.....+.......+..+...+...|++++|+++++++.... +.+...+..+...+...|++++|+..+++..... +
T Consensus 349 --~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-P 424 (765)
T PRK10049 349 --SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-P 424 (765)
T ss_pred --CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-C
Confidence 00000000112345567777888899999999998887764 5667788888888888999999999999888863 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 659 TDIATYNVVIQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 659 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
.+...+......+...|++++|+.+++++++..
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 345666667777888889999999999888864
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=2.3e-14 Score=135.91 Aligned_cols=340 Identities=16% Similarity=0.182 Sum_probs=254.4
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC--ChH-HHHHHHHHHHHhCCCCCHHHHHHHH
Q 003872 85 CTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSG--KID-FAIEILDYMEELGTSLSPNVYDSVL 161 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~-~a~~~~~~~~~~~~~~~~~~~~~ll 161 (790)
.+-+.++ .+...|.+.++--+++.|...|+..++..-..|++.-+-.+ ++- .-.+.|-.|..+|-. +..+|
T Consensus 117 ~~E~nL~-kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLL-KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW---- 190 (625)
T ss_pred cchhHHH-HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc----
Confidence 3444444 34567899999999999999999888888777766544332 222 334566666666532 22233
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNI 241 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (790)
+.|++.+ ++.+. .+....++..+|.++++--..+.|.+++++... ...+.+..++|.
T Consensus 191 ----K~G~vAd---L~~E~---------------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~ 247 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFET---------------LPKTDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNG 247 (625)
T ss_pred ----ccccHHH---HHHhh---------------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhh
Confidence 3344433 33332 566678999999999999999999999999988 667789999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 242 CIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVK----DALIVWEELKGSGHEPNEFTHRIIIQGCC 317 (790)
Q Consensus 242 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 317 (790)
+|.+..-. .-.+++.+|....+.||..|||+++.+..+.|+++ .|.+++.+|++.|+.|...+|..+|..++
T Consensus 248 lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~ 323 (625)
T KOG4422|consen 248 LIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFK 323 (625)
T ss_pred hhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhc
Confidence 99875433 23789999999999999999999999999999865 46678899999999999999999999999
Q ss_pred hcCCHHH-HHHHHHHHHH----CCCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHH
Q 003872 318 KSYRMDD-AMKIFSEMQY----NGLI---P-DTVVYNSLLNGMFKSRKVMEACQLFEKMVQDG----VRTS---CWTHNI 381 (790)
Q Consensus 318 ~~~~~~~-a~~~~~~m~~----~~~~---p-~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~----~~~~---~~~~~~ 381 (790)
+.++..+ +..++.++.. ..++ | |...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..
T Consensus 324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~ 403 (625)
T KOG4422|consen 324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRK 403 (625)
T ss_pred ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHH
Confidence 9888754 4555555442 2222 2 44567778888889999998888876654321 2232 234567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003872 382 LIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFH 457 (790)
Q Consensus 382 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 457 (790)
+....|+....+....+|+.|.-.-..|+..+...++++....+.++-.-++|.++...|...+.....-++..++
T Consensus 404 ~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 404 FFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 7788888999999999999999988889999999999999999999999999999998875544444443443333
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=4.9e-14 Score=155.06 Aligned_cols=235 Identities=10% Similarity=0.059 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 003872 358 MEACQLFEKMVQD-GVRTSC-----WTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEAL 431 (790)
Q Consensus 358 ~~a~~l~~~~~~~-~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 431 (790)
+.|+.-++.+... +-.|.. .+..-.+.++...++..++++.++.+...+......+-..+.++|...+.+++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 4555556665542 111321 1222445677888999999999999998887767778889999999999999999
Q ss_pred HHHHHHHhCC-----CccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccc-hHhHHHHHHHHhhccccccccCCCC
Q 003872 432 RLVEEMEGRG-----FVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLD-VLKWKADVEATMKSRKSKRKDYTPM 505 (790)
Q Consensus 432 ~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 505 (790)
.+++.+.... ..++......|..++...+++++|..+++++.+. .|- ...|
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~--------------------- 404 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVY--------------------- 404 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEecc---------------------
Confidence 9999986653 2334445678999999999999999999998863 120 0000
Q ss_pred CCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCC
Q 003872 506 FPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKG 585 (790)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (790)
....+.
T Consensus 405 --------------------------------------------------------------------------~~~~~~ 410 (822)
T PRK14574 405 --------------------------------------------------------------------------GLPGKE 410 (822)
T ss_pred --------------------------------------------------------------------------CCCCCC
Confidence 000000
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHH
Q 003872 586 MGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYN 665 (790)
Q Consensus 586 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 665 (790)
+.+.=......++..+...|++.+|.+.++.+.... +-|......+.+.+...|.+.+|...++.+... -+-+..+..
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~ 488 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILER 488 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHH
Confidence 111122345566777888999999999999998776 778888899999999999999999999777665 344566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 666 VVIQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 666 ~li~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
..+.++...|++.+|..+.+.+.+..
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 88888889999999999999988864
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=1.2e-13 Score=152.12 Aligned_cols=436 Identities=11% Similarity=0.075 Sum_probs=294.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKK 168 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 168 (790)
..+-...+.|+++.|+..|+...+....-....+ .++..+...|+.++|+..+++.... -+.....+..+...+...|
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 3344566777777888888777766532112233 6667777778888887777777621 1122333444455677777
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhc
Q 003872 169 QLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGC 248 (790)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 248 (790)
++++|+++++++++. .+.+...+..++..+...++.++|++.++.+.. ..|+...+..++..+..
T Consensus 117 dyd~Aiely~kaL~~------------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~ 181 (822)
T PRK14574 117 RWDQALALWQSSLKK------------DPTNPDLISGMIMTQADAGRGGVVLKQATELAE---RDPTVQNYMTLSYLNRA 181 (822)
T ss_pred CHHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHh
Confidence 888888888877775 344455566667777777888888877777765 23444555444444444
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH------HHHHHHHH-----H
Q 003872 249 WGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFT------HRIIIQGC-----C 317 (790)
Q Consensus 249 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~------~~~li~~~-----~ 317 (790)
.++..+|++.++++.+.... +...+..+..++.+.|-...|.++..+-... +.+.... ...+++.- .
T Consensus 182 ~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred cchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhccccccc
Confidence 55665588888888877322 5666677777778888777777776654321 0111100 01111100 0
Q ss_pred hcCC---HHHHHHHHHHHHHC-CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003872 318 KSYR---MDDAMKIFSEMQYN-GLIPDT-VVY----NSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFR 388 (790)
Q Consensus 318 ~~~~---~~~a~~~~~~m~~~-~~~p~~-~~~----~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~ 388 (790)
..++ .+.|+.-++.+... +-.|.. ..| .-.+-++...++..++++.|+.+...+.+.-..+-..+..+|..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 1112 34455555655542 212322 222 23345677889999999999999988866455678889999999
Q ss_pred cCCHHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------------ccCH-HHH
Q 003872 389 NGRAEAAYTLFCDLKKKG-----KFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGF-------------VVDL-VTI 449 (790)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-------------~~~~-~~~ 449 (790)
.+++++|..+++.+.... ..++......|..++...+++++|..+++.+.+... .||- ..+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 999999999999987653 122334457889999999999999999999987311 1232 234
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccc
Q 003872 450 SSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDAN 529 (790)
Q Consensus 450 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (790)
..++..+...|+..+|++.++++...
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~------------------------------------------------------ 445 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSST------------------------------------------------------ 445 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------------------------------------------------
Confidence 45677788999999999999998762
Q ss_pred cCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHH
Q 003872 530 LGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNL 609 (790)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 609 (790)
.|.|+.+...+...+...|++.+
T Consensus 446 ---------------------------------------------------------aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 446 ---------------------------------------------------------APANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred ---------------------------------------------------------CCCCHHHHHHHHHHHHhcCCHHH
Confidence 35688888999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003872 610 ACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK 655 (790)
Q Consensus 610 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 655 (790)
|...++...... +-+..+....+..+...+++.+|..+.+.....
T Consensus 469 A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 469 AEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999998877664 556677788888899999999999999998876
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=6.8e-15 Score=140.27 Aligned_cols=498 Identities=12% Similarity=0.069 Sum_probs=320.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccccc
Q 003872 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNV-YDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
+-.++..|.+-|.......+|+..|+-+++....|+... -..+...+.+...+.+|+..++..+.....-. .
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin-------k 272 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN-------K 272 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc-------h
Confidence 344555677778888889999999999888766666643 33455677888889999999998887531100 0
Q ss_pred CCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHH--
Q 003872 197 LPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTY-- 274 (790)
Q Consensus 197 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-- 274 (790)
.-.....+.+...+.+.|.++.|+..|+...+ ..|+..+--.|+-++...|+.++..+.|.+|......||..-|
T Consensus 273 ~~rikil~nigvtfiq~gqy~dainsfdh~m~---~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~ 349 (840)
T KOG2003|consen 273 DMRIKILNNIGVTFIQAGQYDDAINSFDHCME---EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK 349 (840)
T ss_pred hhHHHHHhhcCeeEEecccchhhHhhHHHHHH---hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC
Confidence 11134456666677889999999999998876 4577666555666666779999999999999765433332211
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCCC
Q 003872 275 ------NSLIQVLCVVGKVKDALIVWEELKGSGHEPNEF----THRIIIQGCCKSYR----MDDAMKIFSEMQYNGLIPD 340 (790)
Q Consensus 275 ------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~~~----~~~a~~~~~~m~~~~~~p~ 340 (790)
..|+.-..+.. .++.|.+.. +.+.. |-..+|.-- -.-+ .+-.++.++.-....+..+
T Consensus 350 ~~ddp~~~ll~eai~nd-------~lk~~ek~~-ka~aek~i~ta~kiiapv-i~~~fa~g~dwcle~lk~s~~~~la~d 420 (840)
T KOG2003|consen 350 EKDDPDDNLLNEAIKND-------HLKNMEKEN-KADAEKAIITAAKIIAPV-IAPDFAAGCDWCLESLKASQHAELAID 420 (840)
T ss_pred CcCCcchHHHHHHHhhH-------HHHHHHHhh-hhhHHHHHHHHHHHhccc-cccchhcccHHHHHHHHHhhhhhhhhh
Confidence 11221111111 111111110 11110 000000000 0000 1122222222111101101
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 003872 341 TVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFR--NGRAEAAYTLFCDLKKKGKFVDGITFSIVV 418 (790)
Q Consensus 341 ~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 418 (790)
.. . .-...+.+.|+++.|.++++-+.+..-+.-...-+.|-..+.- ..++..|..+-........- +......--
T Consensus 421 le-i-~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkg 497 (840)
T KOG2003|consen 421 LE-I-NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKG 497 (840)
T ss_pred hh-h-hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCC
Confidence 11 0 1123467899999999999988776544333333433333222 34577777766655443111 222222222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHH---HHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhcc
Q 003872 419 LQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLL---IGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSR 495 (790)
Q Consensus 419 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 495 (790)
......|++++|.+.+++.+.. |...-.+|. -.+...|+.++|...|-++..-
T Consensus 498 n~~f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-------------------- 553 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-------------------- 553 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH--------------------
Confidence 2334578999999999999887 443333333 3467889999999888776540
Q ss_pred ccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhH
Q 003872 496 KSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSL 575 (790)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 575 (790)
T Consensus 554 -------------------------------------------------------------------------------- 553 (840)
T KOG2003|consen 554 -------------------------------------------------------------------------------- 553 (840)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003872 576 ARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK 655 (790)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 655 (790)
...+..++..+.+.|-...+..+|++++-..... ++.|+....-|...|-+.|+-..|++.+-+--+.
T Consensus 554 -----------l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry 621 (840)
T KOG2003|consen 554 -----------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY 621 (840)
T ss_pred -----------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 0124556667888888889999999998776554 4778889999999999999999999887765554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCChHH
Q 003872 656 FCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLG-KAGRFDEANMLFEQMRTSGINPDVVT 734 (790)
Q Consensus 656 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~ 734 (790)
++.++.+..-|...|....-+++|+.+|++..- +.|+..-|..|+..|. +.|++++|..+|++..++ ++-|...
T Consensus 622 -fp~nie~iewl~ayyidtqf~ekai~y~ekaal---iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldc 696 (840)
T KOG2003|consen 622 -FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL---IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDC 696 (840)
T ss_pred -cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh---cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHH
Confidence 677888888888889999999999999998754 7899999999988776 469999999999998775 7778999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 735 FNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 735 ~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
..-|++.+...|. .++.++-+++.
T Consensus 697 lkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 697 LKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred HHHHHHHhccccc-hhHHHHHHHHH
Confidence 9999999988886 44555555443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=1.7e-12 Score=135.47 Aligned_cols=370 Identities=13% Similarity=0.065 Sum_probs=276.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKK 168 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 168 (790)
.....+...|++++|..++.++.+.+ +.....|..|...|-..|+.+++...+-.....+ +.|...|..+.......|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 33445556699999999999999987 4488899999999999999999998887665554 447788999999999999
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchh----hHHHHHH
Q 003872 169 QLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIY----GYNICIH 244 (790)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~ 244 (790)
+++.|.-.|.++++. .+++....-.-...|.+.|+...|.+-|.++....+ +.|.. .--.+++
T Consensus 222 ~i~qA~~cy~rAI~~------------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 222 NINQARYCYSRAIQA------------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAH 288 (895)
T ss_pred cHHHHHHHHHHHHhc------------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHH
Confidence 999999999999986 455666666677889999999999999999987322 22222 2233466
Q ss_pred HHhccCChHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------------
Q 003872 245 AFGCWGDLHTSLRLFKEMKEK-GLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTH-------------- 309 (790)
Q Consensus 245 ~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-------------- 309 (790)
.+...++-+.|.+.++..... +-.-+...++.++..+.+..+++.|......+......+|..-|
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~ 368 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC 368 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence 677788889999988887763 22345677889999999999999999998887762222222111
Q ss_pred --------H----HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003872 310 --------R----IIIQGCCKSYRMDDAMKIFSEMQYNGL--IPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTS 375 (790)
Q Consensus 310 --------~----~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~ 375 (790)
. -++-++......+....+.....+..+ .-+...|.-+..++...|++.+|+.+|..+...-.--+
T Consensus 369 ~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 369 EVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred cCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 1 122223334444444445555555553 33456788889999999999999999999987654456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH--------hCCCccCHH
Q 003872 376 CWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEME--------GRGFVVDLV 447 (790)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~--------~~~~~~~~~ 447 (790)
...|-.+.++|...|.++.|.+.|+..+..... +...--.|...+.+.|+.++|.+.++.+. ..+..|+..
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~r 527 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERR 527 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHH
Confidence 778889999999999999999999998887432 44555667777888999999999999854 234556666
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh
Q 003872 448 TISSLLIGFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 448 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (790)
........+...|+.++-..+...|..
T Consensus 528 i~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 528 ILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 677777788888888887766666654
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=2.5e-11 Score=121.84 Aligned_cols=463 Identities=13% Similarity=0.061 Sum_probs=272.8
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHH----HHCCCCCCHhHHHHHHHHH
Q 003872 206 LLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEM----KEKGLVPDLHTYNSLIQVL 281 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~ 281 (790)
|..+|++...|+.|..++....+ .++.+...|.+-...--.+|+.+...+++++- ...|+..+...|-.=...|
T Consensus 412 LwlAlarLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 34445555555666666665553 24445555555555555556666555555432 3345555555555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPN--EFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVME 359 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 359 (790)
-+.|..-.+..+.......|+.-. ..||..-...|.+.+.++-|..+|....+- .+-+...|......--..|..++
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHH
Confidence 555666666666555555544322 345555555566666666666666555543 12233444444444444555566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003872 360 ACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEG 439 (790)
Q Consensus 360 a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 439 (790)
...+|.+....- +-....|-.....+...|++..|..++....+.... +...|-.-+........++.|..+|.+...
T Consensus 569 l~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 666666555541 223334444444455556666666666555555332 444455555555555666666666655543
Q ss_pred CCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhh
Q 003872 440 RGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLI 519 (790)
Q Consensus 440 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (790)
..|+...|..-+..-.-.++.++|.+++++..+. .|+...+-.++ |.+.|-+..
T Consensus 647 --~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lml---------------------GQi~e~~~~- 700 (913)
T KOG0495|consen 647 --ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLML---------------------GQIEEQMEN- 700 (913)
T ss_pred --cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHH---------------------hHHHHHHHH-
Confidence 3344455554445445555666666666555542 12211111100 000000000
Q ss_pred cCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHH
Q 003872 520 GSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLS 599 (790)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 599 (790)
....+.--..+...-|..+..|..+..
T Consensus 701 -----------------------------------------------------ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 701 -----------------------------------------------------IEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred -----------------------------------------------------HHHHHHHHHhccccCCCCchHHHHHHH
Confidence 000000011111122445667777777
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003872 600 IFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADL 679 (790)
Q Consensus 600 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 679 (790)
.--+.|.+-.|..+++...-.+ +-+...|-..|++-.+.|..+.|..+..++++. ++.+...|..-|....+.++-..
T Consensus 728 leEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchH
Confidence 7788889999999999887766 668888999999999999999999999888876 55566777777777777777555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 680 ASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 680 A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
....+.+ ..-|.....++...+-....++.|+..|.+....+ .-+-.+|.-+...+.+.|.-++-.++++++.
T Consensus 806 s~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 806 SIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 5554443 34477777777778888889999999999998753 2246788888899999999888899998887
Q ss_pred hC
Q 003872 760 DS 761 (790)
Q Consensus 760 ~~ 761 (790)
..
T Consensus 879 ~~ 880 (913)
T KOG0495|consen 879 TA 880 (913)
T ss_pred cc
Confidence 43
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=1.1e-11 Score=129.44 Aligned_cols=615 Identities=12% Similarity=0.021 Sum_probs=391.7
Q ss_pred CCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003872 60 SLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAI 139 (790)
Q Consensus 60 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 139 (790)
+++...|.+++.-+.+..| ..+..|..+..++-..|+.+.+...+--+...+. -|...|..+.....+.|.++.|.
T Consensus 152 rg~~eeA~~i~~EvIkqdp---~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDP---RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred hCCHHHHHHHHHHHHHhCc---cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHH
Confidence 4678889999988878777 6778999999999999999999988866555543 37789999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcc----hHHHHHHHHHhccc
Q 003872 140 EILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCV----ACNELLVALRKSDR 215 (790)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~ 215 (790)
-.|.+..+..+ ++...+---...|-+.|+...|...|.++.... .+.+.. .--..+..+...++
T Consensus 228 ~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-----------p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 228 YCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLD-----------PPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC-----------CchhHHHHHHHHHHHHHHHHHhhH
Confidence 99999999863 455566666788999999999999999998853 111222 22234556777787
Q ss_pred hHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCC---------------------------C
Q 003872 216 RSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGL---------------------------V 268 (790)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------------------------~ 268 (790)
.+.|.+.++......+-.-+...+++++..+.+...++.|......+..... .
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 8999998888876444455677889999999999999999998888876221 2
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003872 269 PDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGH--EPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNS 346 (790)
Q Consensus 269 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 346 (790)
++..+ -.++-++.+.+..+....+...+.+..+ .-+...|.-+..+|...|++.+|+.+|..+......-+...|-.
T Consensus 376 ~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred ccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 22222 1223344455555566666666666653 33456788899999999999999999999997755556778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CCCCCHhhHHHHH
Q 003872 347 LLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK--------GKFVDGITFSIVV 418 (790)
Q Consensus 347 li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll 418 (790)
+..+|...|..++|.+.|+..+... +-+...--.|-..+-+.|+.++|.+.++.+... +..|+........
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 9999999999999999999998863 234455566777888999999999999886432 2344555555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC----------------------CccCHHHHHHHHHHHHhcCCchHHHHHHH------
Q 003872 419 LQLCREGQIEEALRLVEEMEGRG----------------------FVVDLVTISSLLIGFHKYGRWDFTERLMK------ 470 (790)
Q Consensus 419 ~~~~~~g~~~~a~~~~~~m~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~------ 470 (790)
..+.+.|+.++-..+...|+... ..........++.+-.+.++....+.-..
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 67778888877655555543211 11122233334444444443222211111
Q ss_pred HHHhCCCccchH--hHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCC
Q 003872 471 HIRDGNLVLDVL--KWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSD 548 (790)
Q Consensus 471 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (790)
-....++..+.- .+.-++...++ -++..+|++++..+..
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k---------------~~r~qeAl~vv~~a~~------------------------ 654 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAK---------------LQRVQEALSVVFTALE------------------------ 654 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHh------------------------
Confidence 111122222211 11222222222 2334444444332210
Q ss_pred CCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-CC---CC
Q 003872 549 EWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDM-GV---HP 624 (790)
Q Consensus 549 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-g~---~~ 624 (790)
...+... .......-...+.+.+..+++..|...++.|... +. .-
T Consensus 655 -----------------------~~~f~~~--------~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~ 703 (895)
T KOG2076|consen 655 -----------------------AYIFFQD--------SEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY 703 (895)
T ss_pred -----------------------hhhhhcc--------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence 0000000 0000112234556667788999999998888654 11 12
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLI 704 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li 704 (790)
-...|+..++...+.++-.--.+.+..........+........+-....+.+.-|+..+-.+.... ||....+..+
T Consensus 704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~---pd~Pl~nl~l 780 (895)
T KOG2076|consen 704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN---PDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC---CCCcHHHHHH
Confidence 2345666666667766655555555544433221112222222233456688889999887777754 5543333322
Q ss_pred H-HHHh----------cCCHHHHHHHHHHHHhc-CCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 705 N-VLGK----------AGRFDEANMLFEQMRTS-GINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 705 ~-~~~~----------~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
. ++.. +-.+-.+..++.+-.+. +..-...++-.+.++|...|-..-|..++++.+ ++.|-.
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL--~~~p~~ 853 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVL--EVSPKD 853 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh--CCCccc
Confidence 2 1111 11233455555544442 111245677789999999999999999999998 444433
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=4e-11 Score=115.76 Aligned_cols=470 Identities=8% Similarity=0.013 Sum_probs=332.7
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLV 162 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (790)
+...|-....-=...+++..|..+|+.++..+. -+...|..-+..=.++.....|..++++.+..-+ .-...|...+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP-RVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP-RVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc-hHHHHHHHHHH
Confidence 344444444555566788999999999988763 3667888888888899999999999999988632 23335666666
Q ss_pred HHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHH
Q 003872 163 SLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNIC 242 (790)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 242 (790)
+--..|++..|.++|.+.++ ..|+..+|++.+..-.+...++.|..+++...- +.|++.+|-..
T Consensus 150 mEE~LgNi~gaRqiferW~~-------------w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wiky 213 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME-------------WEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKY 213 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc-------------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHH
Confidence 66778999999999999987 899999999999999999999999999999875 56999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHC-CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHh
Q 003872 243 IHAFGCWGDLHTSLRLFKEMKEK-GL-VPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPN--EFTHRIIIQGCCK 318 (790)
Q Consensus 243 i~~~~~~g~~~~a~~~~~~m~~~-g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~ 318 (790)
.+.-.+.|++..|..+|....+. |- ..+...|.+....-.+...++.|.-+|+-.... ++.+ ...|......--+
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHH
Confidence 99999999999999999988764 11 112334444444445577789999998887765 2333 3445555544445
Q ss_pred cCCHHHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHH-
Q 003872 319 SYRMDDAMKI--------FSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCW-------THNIL- 382 (790)
Q Consensus 319 ~~~~~~a~~~--------~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~-------~~~~l- 382 (790)
-|+.....+. ++.+.+.+ +-|-.+|--.++.-...|+.+...++|+....+ ++|-.. +|--+
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHH
Confidence 5654443332 23344432 346777888888888889999999999998875 444221 12111
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH----HHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003872 383 --IDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQ----LCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGF 456 (790)
Q Consensus 383 --i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 456 (790)
+-.-....+.+.+.++++..++. ++....||..+--. ..++.++..|.+++...+ |..|...+|...|..=
T Consensus 371 YalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelE 447 (677)
T KOG1915|consen 371 YALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELE 447 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHH
Confidence 11123467888999999888874 44455565554333 346778889999888776 5677888888888888
Q ss_pred HhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCC
Q 003872 457 HKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGD 536 (790)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (790)
.+.+++|....++++.++.
T Consensus 448 lqL~efDRcRkLYEkfle~------------------------------------------------------------- 466 (677)
T KOG1915|consen 448 LQLREFDRCRKLYEKFLEF------------------------------------------------------------- 466 (677)
T ss_pred HHHhhHHHHHHHHHHHHhc-------------------------------------------------------------
Confidence 8889999999999888773
Q ss_pred CcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003872 537 AKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEI 616 (790)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 616 (790)
+|.+..+|......-...|+.+.|..+|+.
T Consensus 467 --------------------------------------------------~Pe~c~~W~kyaElE~~LgdtdRaRaifel 496 (677)
T KOG1915|consen 467 --------------------------------------------------SPENCYAWSKYAELETSLGDTDRARAIFEL 496 (677)
T ss_pred --------------------------------------------------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 233555666666666777888889999888
Q ss_pred HHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-----hcC-----------CHHH
Q 003872 617 FTDMG-VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLG-----KMG-----------RADL 679 (790)
Q Consensus 617 ~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-----~~g-----------~~~~ 679 (790)
.++.. .......|-+.|+.-...|.++.|..+++.+++. .+...+|.++..--. +.+ ....
T Consensus 497 Ai~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~ 574 (677)
T KOG1915|consen 497 AISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKR 574 (677)
T ss_pred HhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHH
Confidence 77642 2223456777777778888899999998888875 233445555443222 223 4556
Q ss_pred HHHHHHHHHH
Q 003872 680 ASTILDKLMK 689 (790)
Q Consensus 680 A~~~~~~~~~ 689 (790)
|..+|+.+..
T Consensus 575 AR~iferAn~ 584 (677)
T KOG1915|consen 575 ARKIFERANT 584 (677)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.73 E-value=6.3e-14 Score=144.89 Aligned_cols=589 Identities=14% Similarity=0.105 Sum_probs=345.8
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHH
Q 003872 76 LRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPN 155 (790)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 155 (790)
...+..|+..+|..+|.-||..|+.+.|- +|..|.....+.+...|+.++......++.+.+. .|.++
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 34567789999999999999999999999 9999999888889999999999999999888776 58899
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccc----------ccCC-CcchHHHHHHHHHhccchHHHHHHHH
Q 003872 156 VYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVV----------ESLP-GCVACNELLVALRKSDRRSEFKQVFE 224 (790)
Q Consensus 156 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~ 224 (790)
+|..|+.+|...||+.. .+..++-+........+.... ...| ....-...+....-.|-++.+++++.
T Consensus 85 tyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred HHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999765 333333111111000000000 0000 01111223444455566666666665
Q ss_pred HHHhcCCCCCchhhHHHHHHHHhcc-CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003872 225 RLKEQKEFEFDIYGYNICIHAFGCW-GDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHE 303 (790)
Q Consensus 225 ~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 303 (790)
.++......|..+ +++-+... ..+++-..+-+...+ .|++.+|..++++-..+|+++.|..++.+|.+.|++
T Consensus 164 ~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 164 KVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred hCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 5544222222222 23333222 233333333333332 578888999998888899999999999999999988
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003872 304 PNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILI 383 (790)
Q Consensus 304 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li 383 (790)
.+..-|..++-+ .++...+..++.-|.+.|+.|+..|+.-.+-.+..+|....+ +.| .+....+++-+
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~-sq~~hg~tAav 304 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEG-SQLAHGFTAAV 304 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccc-cchhhhhhHHH
Confidence 888877777765 677788888888888889999988888777666665542211 112 12223333333
Q ss_pred HHHHHcC-----CH-----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--cc-CHHHHH
Q 003872 384 DGLFRNG-----RA-----EAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGF--VV-DLVTIS 450 (790)
Q Consensus 384 ~~~~~~~-----~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~-~~~~~~ 450 (790)
..-+-.| ++ .-....+++..-.|+......|...... ..+|+-+++.++...|..--. .+ ++..|.
T Consensus 305 rsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~ 383 (1088)
T KOG4318|consen 305 RSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFG 383 (1088)
T ss_pred HHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHH
Confidence 2222222 11 1122222222233444344444433332 336777777777776653321 11 334455
Q ss_pred HHHHHHHhcCCchHHHHHHH--HHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCcccccc
Q 003872 451 SLLIGFHKYGRWDFTERLMK--HIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDA 528 (790)
Q Consensus 451 ~l~~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (790)
.++.-|.+.-+......++. +....+.
T Consensus 384 ~~lrqyFrr~e~~~~~~i~~~~qgls~~l--------------------------------------------------- 412 (1088)
T KOG4318|consen 384 ALLRQYFRRIERHICSRIYYAGQGLSLNL--------------------------------------------------- 412 (1088)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhh---------------------------------------------------
Confidence 54544433322111111111 1110000
Q ss_pred ccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcC----CCCcchHHHHHHHHHHHHHc
Q 003872 529 NLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGK----GMGTFDIDMVNTFLSIFLAK 604 (790)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~ 604 (790)
+....|-+..+...+.....-....++--....... .....--+.-+.++..+++.
T Consensus 413 --------------------~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se 472 (1088)
T KOG4318|consen 413 --------------------NSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSE 472 (1088)
T ss_pred --------------------chhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHH
Confidence 000001111111111000000000000000000000 01122234556777777777
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003872 605 GKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK--FCPTDIATYNVVIQGLGKMGRADLAST 682 (790)
Q Consensus 605 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~ 682 (790)
-+..+++..-+.....-+. ..|..||.-++.....+.|..+.++.... .+..|..-+..+.+...+.+....+..
T Consensus 473 ~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 473 YNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 7777776554444333222 67999999999999999999999987653 233455667888899999999999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 683 ILDKLMKQGGGYLD-VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 683 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
+++++.+.--..|+ ..++..+++.....|+.+...++++-+...|+.-+ .-++....+.++...|+++.+...+.
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qk 625 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQK 625 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHH
Confidence 99998875423332 34566677777888999999999998888777653 34567778889999999988887543
Q ss_pred CCCCCccchhHHHHH
Q 003872 762 GCTPNHVTDTTLDFL 776 (790)
Q Consensus 762 ~~~p~~~t~~~l~~l 776 (790)
++|.+.-...+..+
T Consensus 626 -yk~~P~~~e~lcrl 639 (1088)
T KOG4318|consen 626 -YKPYPKDLEGLCRL 639 (1088)
T ss_pred -hcCChHHHHHHHHH
Confidence 45555444444333
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.3e-11 Score=119.17 Aligned_cols=443 Identities=11% Similarity=0.037 Sum_probs=305.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCC
Q 003872 153 SPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEF 232 (790)
Q Consensus 153 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (790)
+...|....+.-...+++..|.++|++++.. ...+...|--.+.+-.+...+..|..+++..... +
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdv------------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--l 137 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDV------------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--L 137 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc------------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--c
Confidence 3444555555555667778888888888765 4556667777788888888888888888888752 3
Q ss_pred CCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003872 233 EFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRII 312 (790)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 312 (790)
|--...|-..+..--..|++..|.++|+.-.+. .|+...|++.+..-.+.+.++.|..+++...-. .|++..|--.
T Consensus 138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wiky 213 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKY 213 (677)
T ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHH
Confidence 323345555666666678999999999988765 889999999999999999999999999988755 6888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHH
Q 003872 313 IQGCCKSYRMDDAMKIFSEMQYN-GL-IPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTS--CWTHNILIDGLFR 388 (790)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~m~~~-~~-~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~--~~~~~~li~~~~~ 388 (790)
.+.-.++|+...|..+|....+. |- ..+...+.++...-.+...++.|.-+|+-.+.+= +.+ ...|..+..---+
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHH
Confidence 88888889999898888887653 10 1122344444444455677888888888877752 222 3344444444344
Q ss_pred cCCHHHHHHH--------HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCH--HHHHHHH----H
Q 003872 389 NGRAEAAYTL--------FCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDL--VTISSLL----I 454 (790)
Q Consensus 389 ~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~l~----~ 454 (790)
-|+.....+. ++.++..+ +.|-.+|--.++.-...|+.+...++++.++.. ++|-. ..|.-.| +
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHH
Confidence 5554433332 33444443 236777777888888889999999999999876 44421 1121111 1
Q ss_pred -HH---HhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCcccccccc
Q 003872 455 -GF---HKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANL 530 (790)
Q Consensus 455 -~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (790)
++ ....+.+.++++++..++ -++...+|+
T Consensus 371 YalyeEle~ed~ertr~vyq~~l~-lIPHkkFtF---------------------------------------------- 403 (677)
T KOG1915|consen 371 YALYEELEAEDVERTRQVYQACLD-LIPHKKFTF---------------------------------------------- 403 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchH----------------------------------------------
Confidence 11 345677778888777766 111111111
Q ss_pred CCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHH
Q 003872 531 GSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLA 610 (790)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 610 (790)
..+|-.....-.++.++..|
T Consensus 404 ------------------------------------------------------------aKiWlmyA~feIRq~~l~~A 423 (677)
T KOG1915|consen 404 ------------------------------------------------------------AKIWLMYAQFEIRQLNLTGA 423 (677)
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHcccHHH
Confidence 22344555566677788888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003872 611 CKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 611 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
.+++...+ |..|-..+|...|..-.+.++++....++++.+..+. -+..+|.-....-...|+.+.|..+|+-++.+
T Consensus 424 RkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 424 RKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 88887765 4577788888888888888888888888888888743 36667777777677788888888888888776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 691 GGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 691 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
.........|-+.|+.-...|.++.|+.+|+++.+.
T Consensus 501 p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 501 PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 544555667778888778888888888888888863
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=9e-11 Score=117.92 Aligned_cols=573 Identities=11% Similarity=0.020 Sum_probs=417.2
Q ss_pred hhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003872 64 SKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILD 143 (790)
Q Consensus 64 ~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 143 (790)
..|-.+++..++.+| .++..|-+-.+.=-..|.+..|..+...=-+. ++-+.+.|.-.+ +....+.|..+..
T Consensus 268 kKaR~llKSvretnP---~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 268 KKARLLLKSVRETNP---KHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHhcCC---CCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHHH
Confidence 445556666655555 45667766666666777777777766543333 334566665544 4456677777777
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHH
Q 003872 144 YMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVF 223 (790)
Q Consensus 144 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 223 (790)
..++.- +.++..|-. +.--..+...-..++++.++. .+.++..|- +.......+.|+-++
T Consensus 340 ~Avr~~-P~Sv~lW~k---A~dLE~~~~~K~RVlRKALe~------------iP~sv~LWK----aAVelE~~~darilL 399 (913)
T KOG0495|consen 340 NAVRFL-PTSVRLWLK---AADLESDTKNKKRVLRKALEH------------IPRSVRLWK----AAVELEEPEDARILL 399 (913)
T ss_pred HHHHhC-CCChhhhhh---HHhhhhHHHHHHHHHHHHHHh------------CCchHHHHH----HHHhccChHHHHHHH
Confidence 777653 334433322 222223344445677777764 344444444 344556677788888
Q ss_pred HHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH----HHh
Q 003872 224 ERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEE----LKG 299 (790)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~ 299 (790)
.+..+- ++.+...|. ++++..-++.|..+++...+. ++-+...|-+....--..|+.+.+.+++++ +..
T Consensus 400 ~rAvec--cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ 472 (913)
T KOG0495|consen 400 ERAVEC--CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQA 472 (913)
T ss_pred HHHHHh--ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 888862 444555554 455567889999999999876 566788888877777889999999998875 456
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003872 300 SGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPD--TVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCW 377 (790)
Q Consensus 300 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 377 (790)
.|+..+...|-.=...|-+.|..-.+..+......-|+.-. ..+|..-...|.+.+.++-|..+|...++-- +.+..
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~s 551 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKS 551 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhH
Confidence 79999999999989999999999999999999888776633 3578888899999999999999999988753 44667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003872 378 THNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFH 457 (790)
Q Consensus 378 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 457 (790)
.|......--..|..+....++++....-. -....|......+...|+...|..++..+.+.... +...|-.-+..-.
T Consensus 552 lWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~ 629 (913)
T KOG0495|consen 552 LWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh
Confidence 787777777778999999999999998733 35666777788888999999999999999987555 7888999999999
Q ss_pred hcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCC
Q 003872 458 KYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDA 537 (790)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (790)
....++.|+.+|.+........-+..-++.+..+ .+..++++.++.+...
T Consensus 630 en~e~eraR~llakar~~sgTeRv~mKs~~~er~-----------------ld~~eeA~rllEe~lk------------- 679 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSISGTERVWMKSANLERY-----------------LDNVEEALRLLEEALK------------- 679 (913)
T ss_pred ccccHHHHHHHHHHHhccCCcchhhHHHhHHHHH-----------------hhhHHHHHHHHHHHHH-------------
Confidence 9999999999999988755444333333333222 2334455544433221
Q ss_pred cccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003872 538 KDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIF 617 (790)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 617 (790)
.-+.-...|-.+.+.+-+.++++.|.+.|..-
T Consensus 680 ------------------------------------------------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G 711 (913)
T KOG0495|consen 680 ------------------------------------------------SFPDFHKLWLMLGQIEEQMENIEMAREAYLQG 711 (913)
T ss_pred ------------------------------------------------hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 11234567888889999999999999988776
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH
Q 003872 618 TDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDV 697 (790)
Q Consensus 618 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 697 (790)
.+.- +-.+..|-.|...-.+.|.+-.|..+++...-++ +-+...|-..|.+-.+.|+.+.|..+..++++. .+.+.
T Consensus 712 ~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg 787 (913)
T KOG0495|consen 712 TKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSG 787 (913)
T ss_pred cccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccc
Confidence 6552 4455677777778888899999999999988774 457889999999999999999999999998887 56677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 698 VMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 698 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
..|.--|....+.++-......++ + ..-|....-++...+....+++.|.++|++..+.
T Consensus 788 ~LWaEaI~le~~~~rkTks~DALk---k--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 788 LLWAEAIWLEPRPQRKTKSIDALK---K--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred hhHHHHHHhccCcccchHHHHHHH---h--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 888888877777666444433333 2 3457777778888899999999999999999854
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=1.7e-13 Score=130.84 Aligned_cols=173 Identities=16% Similarity=0.071 Sum_probs=137.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMG 675 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 675 (790)
.+.-.+-..|++++|+..|-.+-..= ..+....-.+.+.|....+...|++++-+.... ++.|+.+..-|.+.|-+.|
T Consensus 529 niglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqeg 606 (840)
T KOG2003|consen 529 NIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEG 606 (840)
T ss_pred HhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhccc
Confidence 44556777899999999987664321 346677778888999999999999999988876 7889999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH-hccCCHHHHHHH
Q 003872 676 RADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVN-GKAGRLKEAHYF 754 (790)
Q Consensus 676 ~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~A~~~ 754 (790)
+-..|.+.+-+-.+- ++.+..+..=|..-|....-+++|..+|++..- +.|+..-|..++..| .|.|++.+|+++
T Consensus 607 dksqafq~~ydsyry--fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 607 DKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred chhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 999999887654443 566777777677778888889999999998764 799999999888655 557999999999
Q ss_pred HHHHHhCCCCCCccchhHHHHHHH
Q 003872 755 LKMMLDSGCTPNHVTDTTLDFLGR 778 (790)
Q Consensus 755 ~~~m~~~~~~p~~~t~~~l~~l~~ 778 (790)
+++..+. ++-|. .+|.+|.|
T Consensus 683 yk~~hrk-fpedl---dclkflvr 702 (840)
T KOG2003|consen 683 YKDIHRK-FPEDL---DCLKFLVR 702 (840)
T ss_pred HHHHHHh-Cccch---HHHHHHHH
Confidence 9999865 55554 34555544
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.62 E-value=4e-12 Score=131.84 Aligned_cols=274 Identities=16% Similarity=0.174 Sum_probs=186.5
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 003872 105 SLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEAC 184 (790)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 184 (790)
.+|-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.....+.....|+.++.+..+.++.+.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enp----------- 78 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENP----------- 78 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCC-----------
Confidence 45667888999999999999999999999999998 999998888878888899999988888887765
Q ss_pred ccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHH-
Q 003872 185 NDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMK- 263 (790)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~- 263 (790)
..|...+|..|+.+|...|+... .+..++ ....+...+...|.-.....++..+.
T Consensus 79 -----------kep~aDtyt~Ll~ayr~hGDli~-fe~veq------------dLe~i~~sfs~~Gvgs~e~~fl~k~~c 134 (1088)
T KOG4318|consen 79 -----------KEPLADTYTNLLKAYRIHGDLIL-FEVVEQ------------DLESINQSFSDHGVGSPERWFLMKIHC 134 (1088)
T ss_pred -----------CCCchhHHHHHHHHHHhccchHH-HHHHHH------------HHHHHHhhhhhhccCcHHHHHHhhccc
Confidence 46677899999999999998876 222222 11223444555555555555555432
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHH
Q 003872 264 EKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKS-YRMDDAMKIFSEMQYNGLIPDTV 342 (790)
Q Consensus 264 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~ 342 (790)
..+.-||.. .++....-.|-++.+++++..+....... +... +++-+... ..+++-..+.....+ .|+..
T Consensus 135 ~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~ 205 (1088)
T KOG4318|consen 135 CPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSE 205 (1088)
T ss_pred CcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChH
Confidence 223344433 23444455566677777776664331111 1111 23333322 223333333333332 47888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 003872 343 VYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLC 422 (790)
Q Consensus 343 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 422 (790)
+|..++..-...|+++.|..++.+|.+.|++.+.+-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.
T Consensus 206 ~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l 282 (1088)
T KOG4318|consen 206 TLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL 282 (1088)
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence 8888888888888888888888888888887777766666655 6777888888888888888888888887777766
Q ss_pred HcCC
Q 003872 423 REGQ 426 (790)
Q Consensus 423 ~~g~ 426 (790)
++|.
T Consensus 283 ~N~~ 286 (1088)
T KOG4318|consen 283 SNGQ 286 (1088)
T ss_pred cchh
Confidence 6554
No 39
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.60 E-value=4.2e-09 Score=106.05 Aligned_cols=560 Identities=13% Similarity=0.115 Sum_probs=318.7
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003872 85 CTYSHIFRTVCRAGFLEEVPSLLNSMQED-DVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVS 163 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~l~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 163 (790)
..|-..+..+.++|++..-+..|+..+.. .+.....+|...+.-....+-++.+..+|++..+. ++..-+-.+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 45666667777888888888888877664 23334467788888888889999999999998874 45557778888
Q ss_pred HHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchH---HHHHHHHHHHhcCCCCCc--hhh
Q 003872 164 LVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRS---EFKQVFERLKEQKEFEFD--IYG 238 (790)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~--~~~ 238 (790)
++..++.++|.+.+..++.... +.....+.+...|..+-....+.-+.- ....+++.+.. .-+| ...
T Consensus 179 L~~~d~~~eaa~~la~vln~d~-----f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~---rftDq~g~L 250 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDE-----FVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR---RFTDQLGFL 250 (835)
T ss_pred HHhccchHHHHHHHHHhcCchh-----hhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc---cCcHHHHHH
Confidence 9999999999999988865421 111113344566666666555543332 23344444432 2234 467
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003872 239 YNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCK 318 (790)
Q Consensus 239 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 318 (790)
|..|.+.|.+.|.+++|..+|++.... ..+..-|..+.++|+.-..-.-+..+=-.-.+.|-+-+...+...+..+-.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 899999999999999999999998765 345556666777766533211111111000011111122221111111100
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcC
Q 003872 319 --SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRT------SCWTHNILIDGLFRNG 390 (790)
Q Consensus 319 --~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~------~~~~~~~li~~~~~~~ 390 (790)
.+..- +++...-..-+.++..|..-+. +..|+..+....|.+..+. +.| -...|..+...|-..|
T Consensus 329 lm~rr~~----~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 329 LMNRRPL----LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHhccch----HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcC
Confidence 00000 1111110001123334433332 2234555555555555542 111 1234555556666666
Q ss_pred CHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----------C-Cc------cCHHHHH
Q 003872 391 RAEAAYTLFCDLKKKGKFVD---GITFSIVVLQLCREGQIEEALRLVEEMEGR----------G-FV------VDLVTIS 450 (790)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----------~-~~------~~~~~~~ 450 (790)
+++.|..+|++..+...+-- ..+|-.-...-.+..+++.|+++.+..... | .+ -+...|.
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHH
Confidence 66666666666655533211 223444444444555666666665554321 0 01 1344566
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCccchHh--HHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCcccccc
Q 003872 451 SLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLK--WKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDA 528 (790)
Q Consensus 451 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (790)
..++.-...|-++....+++.+.+..+...... |..+++- ..-++++.+.+.+-..
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEe------------------h~yfeesFk~YErgI~---- 539 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE------------------HKYFEESFKAYERGIS---- 539 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------------hHHHHHHHHHHHcCCc----
Confidence 666666777788888888888877665433222 2222220 0112233333222110
Q ss_pred ccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHc---C
Q 003872 529 NLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAK---G 605 (790)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~ 605 (790)
+| .-|.-.++|+..+.-+.+. .
T Consensus 540 -------------------------------------------LF------------k~p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 540 -------------------------------------------LF------------KWPNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred -------------------------------------------cC------------CCccHHHHHHHHHHHHHHHhcCC
Confidence 00 0123456788877776653 3
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHH--HHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 003872 606 KLNLACKLFEIFTDMGVHPVNYTYNSMM--SSFVKKGYFNQAWGVLNEMGEKFCPTD--IATYNVVIQGLGKMGRADLAS 681 (790)
Q Consensus 606 ~~~~a~~~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~ 681 (790)
+++.|..+|+..++ |.+|.-.-+--|+ ..-.+.|-...|+.++++.... +++. ...||+.|.--...=.+....
T Consensus 565 klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR 642 (835)
T KOG2047|consen 565 KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTR 642 (835)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccH
Confidence 88999999999998 5554432222221 1223458888999999997765 4443 347888777655555566678
Q ss_pred HHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHh-cCCCCChHHHHHHHHHHhccCC
Q 003872 682 TILDKLMKQGGGYLDVVMYN---TLINVLGKAGRFDEANMLFEQMRT-SGINPDVVTFNTLIEVNGKAGR 747 (790)
Q Consensus 682 ~~~~~~~~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~ 747 (790)
.+++++++. -||...-. -..+.-++.|.+++|+.+|.-..+ .....+..-|.+.=.-=.+.|+
T Consensus 643 ~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 643 EIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 888888875 35544333 234445678999999999987766 3344456778888887888898
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.3e-09 Score=105.41 Aligned_cols=367 Identities=14% Similarity=0.046 Sum_probs=248.4
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-
Q 003872 266 GLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVY- 344 (790)
Q Consensus 266 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~- 344 (790)
+...|...+-...-.+.+.|....|...|......- +..=..|..|...+ .+.+.+. .... |...|...+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~----~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILS----ILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHH----HHHh-cCcccchHHH
Confidence 344455555445555667788888888888876431 23333343333322 2222222 2221 122121111
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHHHH
Q 003872 345 -NSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKF--VDGITFSIVVLQL 421 (790)
Q Consensus 345 -~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~ 421 (790)
-.+..++-.....+++.+-.......|++-+...-+....+.-...+++.|+.+|+++.+...- -|..+|+.++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 2234455566677888888888888887666665555566666778899999999998887321 2556677666443
Q ss_pred HHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhcccccccc
Q 003872 422 CREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKD 501 (790)
Q Consensus 422 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 501 (790)
....+ +.++.+-.-.--+-.+.|...+.+.|+-.++.++|...|+...+-+
T Consensus 310 ~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN------------------------- 360 (559)
T KOG1155|consen 310 NDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN------------------------- 360 (559)
T ss_pred hhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-------------------------
Confidence 32222 2222222211122356678888888888899999999998887632
Q ss_pred CCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhH
Q 003872 502 YTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRV 581 (790)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 581 (790)
T Consensus 361 -------------------------------------------------------------------------------- 360 (559)
T KOG1155|consen 361 -------------------------------------------------------------------------------- 360 (559)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH
Q 003872 582 QGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDI 661 (790)
Q Consensus 582 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 661 (790)
+....+|+-+..-|....+...|..-++..++.. +.|-..|-.|..+|...+.+.-|+-.|++.... -+.|.
T Consensus 361 ------p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDs 432 (559)
T KOG1155|consen 361 ------PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDS 432 (559)
T ss_pred ------cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCch
Confidence 3345567788888888888999999999888876 678888999999999999999999999998886 35578
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCC--hHHH
Q 003872 662 ATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT----SGINPD--VVTF 735 (790)
Q Consensus 662 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~ 735 (790)
..|.+|..+|.+.++.++|++.|.....-+ ..+...+..|...|-+.++.++|.+.|++-.+ .|..-+ ....
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~--dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~ 510 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLG--DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKAR 510 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 899999999999999999999999988875 33567888889999999999999998887765 233322 2222
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 736 NTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 736 ~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
.=|..-+.+.+++++|..+......
T Consensus 511 ~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 511 LFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHhc
Confidence 2355667788899999888777763
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=1.1e-13 Score=137.25 Aligned_cols=263 Identities=16% Similarity=0.129 Sum_probs=93.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDD-VVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRK 167 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 167 (790)
.+...+.+.|++++|+++++...... .+-+...|..+...+...++++.|++.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45777888899999999886544443 2334455555666777788899999999988876533 56667777777 688
Q ss_pred CChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHh
Q 003872 168 KQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFG 247 (790)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 247 (790)
+++++|..++.+..+. .++...+..++..+...++++++.++++.+......+.+...|..+...+.
T Consensus 91 ~~~~~A~~~~~~~~~~-------------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER-------------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred cccccccccccccccc-------------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 8888888887776553 344455666777777778888888888777654445566777777777777
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003872 248 CWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMK 327 (790)
Q Consensus 248 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 327 (790)
+.|+.++|.+.+++..+..+. |......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.
T Consensus 158 ~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccc
Confidence 888888888888887776322 46667777777777777777777777766543 4445566677777777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 328 IFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQ 369 (790)
Q Consensus 328 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~ 369 (790)
+|++..+.. +.|......+..++...|+.++|.++.++...
T Consensus 236 ~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 236 YLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccc-cccccccccccccccccccccccccccccccc
Confidence 887777642 23666666777777777887777777766543
No 42
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.50 E-value=3.5e-08 Score=99.62 Aligned_cols=508 Identities=12% Similarity=0.088 Sum_probs=284.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCC
Q 003872 120 ETFKLLLEPCIKSGKIDFAIEILDYMEEL-GTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLP 198 (790)
Q Consensus 120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (790)
..|..-++.+.++|+.......|+..+.. .+.....+|...+.-....+-++.+..++++.++. .
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-------------~- 168 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-------------A- 168 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-------------C-
Confidence 36666777777888888888888877654 22223346777777777778888888888887652 2
Q ss_pred CcchHHHHHHHHHhccchHHHHHHHHHHHhcC-----CCCCchhhHHHHHHHHhccCChH---HHHHHHHHHHHCCCCCC
Q 003872 199 GCVACNELLVALRKSDRRSEFKQVFERLKEQK-----EFEFDIYGYNICIHAFGCWGDLH---TSLRLFKEMKEKGLVPD 270 (790)
Q Consensus 199 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~ 270 (790)
+..-+..+..+++.+++++|.+.+....... ..+.+...|..+-...+++-+.- ....+++.+... .+|
T Consensus 169 -P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftD 245 (835)
T KOG2047|consen 169 -PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTD 245 (835)
T ss_pred -HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcH
Confidence 2336778888888888888888888776521 12334555666665555543322 233344444333 334
Q ss_pred --HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HCCCCCCHHHHHH
Q 003872 271 --LHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQ--YNGLIPDTVVYNS 346 (790)
Q Consensus 271 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~~p~~~~~~~ 346 (790)
...|++|.+.|.+.|.+++|..+|++..+. ..++.-|+.+.++|..-..-.-+..+ + +. +.+-.-+...+.
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e-~a~~~~~n~ed~~dl~- 320 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-E-LADEESGNEEDDVDLE- 320 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-h-hhhhcccChhhhhhHH-
Confidence 356788888888888888888888887655 44555666677777653322211111 1 11 111111111121
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------
Q 003872 347 LLNGMFKSRKVMEACQLFEKMVQD-----------GVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFV------ 409 (790)
Q Consensus 347 li~~~~~~~~~~~a~~l~~~~~~~-----------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------ 409 (790)
-.+.-|+.+... .-+-++..|..-+.. ..|+..+-...+.+..+. +.|
T Consensus 321 ------------~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs 385 (835)
T KOG2047|consen 321 ------------LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGS 385 (835)
T ss_pred ------------HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCC
Confidence 122222222221 112344455443333 357777788888887765 222
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccC---HHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHH
Q 003872 410 DGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVD---LVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKA 486 (790)
Q Consensus 410 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 486 (790)
-...|..+.+.|-..|+++.|..+|++..+-.++-- ..+|..-...=.+..+++.|.++++.... .|....
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~--- 459 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE--- 459 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh---
Confidence 233477888889999999999999999887644321 23344444444556667777776655443 222100
Q ss_pred HHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhcc
Q 003872 487 DVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSD 566 (790)
Q Consensus 487 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (790)
+ ..++... |..
T Consensus 460 -~----------------------------~~yd~~~------------------------------pvQ---------- 470 (835)
T KOG2047|consen 460 -L----------------------------EYYDNSE------------------------------PVQ---------- 470 (835)
T ss_pred -h----------------------------hhhcCCC------------------------------cHH----------
Confidence 0 0000000 000
Q ss_pred CcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 003872 567 CHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAW 646 (790)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 646 (790)
.++ ..+..+|..+++.--..|-++....+++.+++..+. ++.........+..+..+++++
T Consensus 471 ------------~rl------hrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesF 531 (835)
T KOG2047|consen 471 ------------ARL------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESF 531 (835)
T ss_pred ------------HHH------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHH
Confidence 000 114556667777777777888888888888776542 3333222233445566677788
Q ss_pred HHHHHHhhcCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHH
Q 003872 647 GVLNEMGEKFCPTDI-ATYNVVIQGLGK---MGRADLASTILDKLMKQGGGYLDVVMYNTLI--NVLGKAGRFDEANMLF 720 (790)
Q Consensus 647 ~~~~~m~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~ 720 (790)
+++++-+..-..|+. .+|+..+.-+.+ ...++.|..+|+++++. .+|...-+--|+ ..--+.|-...|..++
T Consensus 532 k~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~--Cpp~~aKtiyLlYA~lEEe~GLar~amsiy 609 (835)
T KOG2047|consen 532 KAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG--CPPEHAKTIYLLYAKLEEEHGLARHAMSIY 609 (835)
T ss_pred HHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 877776665444443 356666555443 23577888888887773 444433222221 1112347777777777
Q ss_pred HHHHhcCCCCC--hHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 721 EQMRTSGINPD--VVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 721 ~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
++.... +.+. ...||..|.--...=-.....+++++.++.
T Consensus 610 erat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 610 ERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 776542 3333 345665554332221223345555555543
No 43
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=4e-09 Score=98.39 Aligned_cols=488 Identities=13% Similarity=0.105 Sum_probs=287.6
Q ss_pred HHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCh
Q 003872 91 FRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQL 170 (790)
Q Consensus 91 ~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 170 (790)
+.-+...+++..|+.+++.-...+-.-...+-.-+...+.+.|++++|...|..+.... .++...+..|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 45566778888888888776654433222344445666778899999999998887643 45667777788888888888
Q ss_pred hHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHH-HHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhcc
Q 003872 171 GLAMSILFKLLEACNDNTADNSVVESLPGCVACNEL-LVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCW 249 (790)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 249 (790)
.+|.++... -|+....+.| .....+.++-++...+.+.+.. ...---+|.......
T Consensus 108 ~eA~~~~~k-----------------a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR 164 (557)
T KOG3785|consen 108 IEAKSIAEK-----------------APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMR 164 (557)
T ss_pred HHHHHHHhh-----------------CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHH
Confidence 888876654 2333344444 4555667777777666666654 223333455555555
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003872 250 GDLHTSLRLFKEMKEKGLVPDLHTYNSLI-QVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKI 328 (790)
Q Consensus 250 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 328 (790)
-.+++|+++|...... .|.-...|.-+ -+|.+..-++-+.++++-.... ++.+....|.......+.=+-..|.+-
T Consensus 165 ~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHH
Confidence 6788999999988876 45555555544 3455666677777887776655 244455555555444444333445555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003872 329 FSEMQYNGLIPDTVVYNSLLNGMFKS-----RKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLK 403 (790)
Q Consensus 329 ~~~m~~~~~~p~~~~~~~li~~~~~~-----~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 403 (790)
..++.+++-.. | ..+.-.++. ++-+.|++++-.+.+. -| ..--.|+-.|.+.+++.+|..+.+++.
T Consensus 242 ~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 242 KKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred HHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC
Confidence 55555543211 1 122222332 3456788887776653 23 233456667888999999998887664
Q ss_pred hCCCCCCHhhHHHHHHH--HHHcC-------CHHHHHHHHHHHHhCCCccCHHH-HHHHHHHHHhcCCchHHHHHHHHHH
Q 003872 404 KKGKFVDGITFSIVVLQ--LCREG-------QIEEALRLVEEMEGRGFVVDLVT-ISSLLIGFHKYGRWDFTERLMKHIR 473 (790)
Q Consensus 404 ~~~~~~~~~~~~~ll~~--~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (790)
-. ++.-| ++.+ +...| ...-|.+.|.-.-+.+.+-|... -.++..++.-..++|++.
T Consensus 313 Pt----tP~Ey--ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl------- 379 (557)
T KOG3785|consen 313 PT----TPYEY--ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVL------- 379 (557)
T ss_pred CC----ChHHH--HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH-------
Confidence 32 22222 2222 22222 34556666665555544433221 122333333333333333
Q ss_pred hCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCC
Q 003872 474 DGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSS 553 (790)
Q Consensus 474 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (790)
+|-.-|.+|+.+
T Consensus 380 ---------~YlnSi~sYF~N----------------------------------------------------------- 391 (557)
T KOG3785|consen 380 ---------TYLNSIESYFTN----------------------------------------------------------- 391 (557)
T ss_pred ---------HHHHHHHHHhcC-----------------------------------------------------------
Confidence 333333333322
Q ss_pred hhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhH-HHH
Q 003872 554 PYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTY-NSM 632 (790)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l 632 (790)
+...--.+..+++..|.+.+|.++|-.+....++ |..+| ..|
T Consensus 392 ------------------------------------dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~L 434 (557)
T KOG3785|consen 392 ------------------------------------DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSML 434 (557)
T ss_pred ------------------------------------cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHH
Confidence 1122235788899999999999999887755544 44555 456
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003872 633 MSSFVKKGYFNQAWGVLNEMGEKFCPTDIATY-NVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG 711 (790)
Q Consensus 633 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 711 (790)
.+.|.+++.++.|..++-.+.. +.+..+. ..+.+-|.+.+.+=-|.+.|+.+.. ..|++..|. |
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~---lDP~pEnWe---------G 499 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI---LDPTPENWE---------G 499 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc---cCCCccccC---------C
Confidence 6788899999988777655443 2334433 4455678888988888888887654 568888875 3
Q ss_pred CHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCC
Q 003872 712 RFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGR 747 (790)
Q Consensus 712 ~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 747 (790)
.-.....+|..+....-.|- ..+..-++..+...++
T Consensus 500 KRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 500 KRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPN 536 (557)
T ss_pred ccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCC
Confidence 33345667777765433333 2333444444444443
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=6e-11 Score=109.24 Aligned_cols=246 Identities=12% Similarity=0.059 Sum_probs=154.5
Q ss_pred CCCCCCChHHHHHHhhcCCCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCC---
Q 003872 42 PRSIPISEPLVLQVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVD--- 118 (790)
Q Consensus 42 ~~~~~~~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~--- 118 (790)
....++|.+.+..+--..+.+|+.|++.|.-+.+.+| .+.++--++-+.+.++|..|.|+++...+..+.-.+.
T Consensus 30 ~qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~---~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr 106 (389)
T COG2956 30 DQANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDP---ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQR 106 (389)
T ss_pred HHHhhccHHHHhHHHHHhhcCcchHHHHHHHHHhcCc---hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHH
Confidence 3445688888888777777889999999988876554 4556666788888889999999999988887643222
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCC
Q 003872 119 SETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLP 198 (790)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (790)
..+.-.|.+-|...|-+++|+++|..+...+ .--......|+..|-...++++|+++-.++...+.... ...
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~-------~~e 178 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY-------RVE 178 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc-------hhH
Confidence 2345567788888999999999999887754 23456788888888888888888888887766542110 000
Q ss_pred CcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003872 199 GCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLI 278 (790)
Q Consensus 199 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 278 (790)
-..-|..|...+....+.+.|..++.+..+. -+..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|.
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 0122333444444455555555555555431 11122233334445555555555555555555553333344455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 003872 279 QVLCVVGKVKDALIVWEELKGS 300 (790)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~~~~~ 300 (790)
.+|...|+.++....+..+.+.
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHc
Confidence 5555555555555555555443
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=2.7e-10 Score=118.23 Aligned_cols=87 Identities=11% Similarity=-0.011 Sum_probs=43.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH
Q 003872 352 FKSRKVMEACQLFEKMVQDGVRTSCWTHN--ILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEE 429 (790)
Q Consensus 352 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 429 (790)
.+.|+.+.|.+.+.++.+. .|+..... .....+...|+++.|...++.+.+.... ++.....+...|.+.|+++.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555443 23322111 1234445555555555555555554322 34445555555555555555
Q ss_pred HHHHHHHHHhCC
Q 003872 430 ALRLVEEMEGRG 441 (790)
Q Consensus 430 a~~~~~~m~~~~ 441 (790)
|..++..+.+.+
T Consensus 206 a~~~l~~l~k~~ 217 (398)
T PRK10747 206 LLDILPSMAKAH 217 (398)
T ss_pred HHHHHHHHHHcC
Confidence 555555555544
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.8e-09 Score=107.43 Aligned_cols=278 Identities=11% Similarity=0.037 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003872 375 SCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLI 454 (790)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 454 (790)
+......-..-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+-..+.+. .+-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44445555566666777777777777776663 224444555555667777766666666666665 3335667777777
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCC
Q 003872 455 GFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGE 534 (790)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (790)
.|...|+..+|++.|.+...-
T Consensus 321 YYl~i~k~seARry~SKat~l----------------------------------------------------------- 341 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTL----------------------------------------------------------- 341 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhc-----------------------------------------------------------
Confidence 777777777777777765431
Q ss_pred CCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 003872 535 GDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLF 614 (790)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 614 (790)
++.-...|-.+...|+-.|..++|...+
T Consensus 342 ----------------------------------------------------D~~fgpaWl~fghsfa~e~EhdQAmaaY 369 (611)
T KOG1173|consen 342 ----------------------------------------------------DPTFGPAWLAFGHSFAGEGEHDQAMAAY 369 (611)
T ss_pred ----------------------------------------------------CccccHHHHHHhHHhhhcchHHHHHHHH
Confidence 1112334566666777777777776666
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-
Q 003872 615 EIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGG- 693 (790)
Q Consensus 615 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~- 693 (790)
....+.- +-..--+--+.--|.+.+.+..|.+.|.+.... .+.|+.+.+-+.-...+.+.+.+|..+|+..+..-..
T Consensus 370 ~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 370 FTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV 447 (611)
T ss_pred HHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc
Confidence 5554331 001111122333456667777777777776665 3445666666655556666777777777666532100
Q ss_pred ---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 003872 694 ---YL-DVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 694 ---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 769 (790)
++ -..+++.|..+|.+.+.+++|+..+++..... +-++.++.++.-.|...|+++.|++.|.+.+ .+.||..+
T Consensus 448 ~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~ 524 (611)
T KOG1173|consen 448 LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIF 524 (611)
T ss_pred cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHH
Confidence 01 22346666666777777777777777766642 3356667777777777777777777777766 45666644
Q ss_pred h
Q 003872 770 D 770 (790)
Q Consensus 770 ~ 770 (790)
.
T Consensus 525 ~ 525 (611)
T KOG1173|consen 525 I 525 (611)
T ss_pred H
Confidence 3
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=8.7e-09 Score=99.93 Aligned_cols=329 Identities=9% Similarity=0.001 Sum_probs=198.7
Q ss_pred CCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHH-H
Q 003872 233 EFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPN-EFTH-R 310 (790)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~-~ 310 (790)
..|...+-.....+.+.|..+.|...|......- +-.-..|..|...+ .+.+.+ ...... .+.+ ...- -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~----~~l~~~-l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEIL----SILVVG-LPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHH----HHHHhc-CcccchHHHHH
Confidence 3344444444455556677777777777666541 12333333333222 122222 222111 1211 1111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHH
Q 003872 311 IIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGV--RTSCWTHNILIDGLFR 388 (790)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~~li~~~~~ 388 (790)
-+..++-...+.+++..-.......|++-+...-+....+.....++++|+.+|+++.++.. --|..+|+.++-.--.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 22344555556677777777777766655554444445555666777888888887777631 1245556555443322
Q ss_pred cCCHH-HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHH
Q 003872 389 NGRAE-AAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTER 467 (790)
Q Consensus 389 ~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 467 (790)
...+. -|..++ .+ ... -+.|...+.+-|.-.++.++|..+|+..++.+.. ....|+.+..-|....+...|..
T Consensus 312 ~skLs~LA~~v~-~i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVS-NI--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHH-Hh--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 11111 111111 11 112 3445556666677777788888888887776443 45667777777777777777777
Q ss_pred HHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCC
Q 003872 468 LMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNS 547 (790)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (790)
.++...+
T Consensus 386 sYRrAvd------------------------------------------------------------------------- 392 (559)
T KOG1155|consen 386 SYRRAVD------------------------------------------------------------------------- 392 (559)
T ss_pred HHHHHHh-------------------------------------------------------------------------
Confidence 7777665
Q ss_pred CCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChh
Q 003872 548 DEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNY 627 (790)
Q Consensus 548 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 627 (790)
+.|.|-..|-.|.++|.-.+.+.-|+-.|++..+.. +-|..
T Consensus 393 --------------------------------------i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsR 433 (559)
T KOG1155|consen 393 --------------------------------------INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSR 433 (559)
T ss_pred --------------------------------------cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchH
Confidence 234466677778888888888888888888877664 66788
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 628 TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 628 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 689 (790)
.|.+|...|.+.++.++|++-|+.....|- .+...+..|...|-+.++.++|.+.+++.++
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 888888888888888888888888877642 2457788888888888888888888877665
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=2.5e-10 Score=119.27 Aligned_cols=135 Identities=14% Similarity=0.044 Sum_probs=87.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIAT-YNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTL 703 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 703 (790)
+...+..+...+...|+.++|..++++..+......... ...........++.+.+.+.++...+..+-.|+.....++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL 341 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL 341 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 566666677777777777777777777776532211111 1111122234466777777777777664233322556677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 704 INVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 704 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
...|.+.|++++|.+.|+........|+..++..+...+.+.|+.++|.+++++..
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77888888888888888854443356777777788888888888888888887753
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=2.8e-10 Score=118.15 Aligned_cols=220 Identities=12% Similarity=0.058 Sum_probs=113.9
Q ss_pred HHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCH-------hHHHHHHHHH
Q 003872 209 ALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDL-------HTYNSLIQVL 281 (790)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~ 281 (790)
.+...|+++.|...++.+.+. -|-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++...
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444431 1223444455555555555555555555555554433211 1222233333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEAC 361 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 361 (790)
....+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.++++
T Consensus 240 ~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al 314 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLE 314 (398)
T ss_pred HHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHH
Confidence 3334445555555554332 1345555566666666666666666666666553 3333211 222333446666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003872 362 QLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEME 438 (790)
Q Consensus 362 ~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 438 (790)
+..+...+.. +-|...+..+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|..++++-.
T Consensus 315 ~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 315 KVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666543 223444556666666666666666666666654 4556666666666666666666666666554
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=5.4e-10 Score=108.74 Aligned_cols=165 Identities=15% Similarity=0.161 Sum_probs=122.0
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003872 587 GTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV 666 (790)
Q Consensus 587 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 666 (790)
++.++++|-.-...+.-.+++++|..=|++.++.. +-+...|-.+.-+..+.+.++++...|++..++ ++.-+.+|+.
T Consensus 390 dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~ 467 (606)
T KOG0547|consen 390 DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNL 467 (606)
T ss_pred CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHH
Confidence 34566777777777777788888888888888765 456666777766777788888899999988877 5667788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-------HH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHH
Q 003872 667 VIQGLGKMGRADLASTILDKLMKQGGGYLD-------VV--MYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFN 736 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~ 736 (790)
....+...++++.|.+.|+..++.. |+ .. .--+++- +-..+++..|.+++++..+. .| ....|.
T Consensus 468 fAeiLtDqqqFd~A~k~YD~ai~LE---~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~ 541 (606)
T KOG0547|consen 468 FAEILTDQQQFDKAVKQYDKAIELE---PREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIEL--DPKCEQAYE 541 (606)
T ss_pred HHHHHhhHHhHHHHHHHHHHHHhhc---cccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHcc--CchHHHHHH
Confidence 8888888899999999998887753 32 11 1112221 22348888899988888874 33 356788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHH
Q 003872 737 TLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 737 ~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
+|...-...|+.++|+++|++-.
T Consensus 542 tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 542 TLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 88888888899999999888754
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.45 E-value=5.6e-13 Score=132.11 Aligned_cols=157 Identities=20% Similarity=0.206 Sum_probs=67.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 003872 598 LSIFLAKGKLNLACKLFEIFTDMG-VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGR 676 (790)
Q Consensus 598 i~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 676 (790)
+..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|+..+++.++.. |.|....+.++..+...|+
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 333444444444444444433221 13344455555555555666666666666555542 2234455555555555566
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHH
Q 003872 677 ADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLK 756 (790)
Q Consensus 677 ~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 756 (790)
.+++.++++...... +.|...|..+..+|...|+.++|..+|++..... +.|+.+...+..++...|+.++|.++..
T Consensus 196 ~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 196 YDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred hHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 555555555554442 2333445555555556666666666666555431 2245555555566666666666655555
Q ss_pred HH
Q 003872 757 MM 758 (790)
Q Consensus 757 ~m 758 (790)
+.
T Consensus 273 ~~ 274 (280)
T PF13429_consen 273 QA 274 (280)
T ss_dssp --
T ss_pred cc
Confidence 44
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=5.9e-10 Score=116.46 Aligned_cols=287 Identities=12% Similarity=0.005 Sum_probs=162.7
Q ss_pred cCChHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcc--hHHHHHH
Q 003872 132 SGKIDFAIEILDYMEELGTSLSPN-VYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCV--ACNELLV 208 (790)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ll~ 208 (790)
.|+++.|.+.+.+..+.. |++. .+-....++...|+.+.|...+.+..+. .|+.. ..-....
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-------------~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-------------AGNDNILVEIARTR 161 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------CCcCchHHHHHHHH
Confidence 456666666665554432 2222 2233344455556666666666655442 22222 2222345
Q ss_pred HHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHH-HHHHHH---Hhc
Q 003872 209 ALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYN-SLIQVL---CVV 284 (790)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~---~~~ 284 (790)
.+...|+++.|.+.++.+.+. -|-+...+..+...+...|+++.|.+++..+.+.++. +...+. .-..++ ...
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666652 1234456666777777777777777777777766543 222221 111111 222
Q ss_pred CCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHH
Q 003872 285 GKVKDALIVWEELKGSG---HEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVV---YNSLLNGMFKSRKVM 358 (790)
Q Consensus 285 ~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~~~~ 358 (790)
+..+.+.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChH
Confidence 22222233333333321 12366777777777888888888888888877652 33331 111122223446677
Q ss_pred HHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 003872 359 EACQLFEKMVQDGVRTSC--WTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEE 436 (790)
Q Consensus 359 ~a~~l~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 436 (790)
.+.+.++...+.. +-+. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 317 ~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777776652 2233 455577778888888888888888544443456777777888888888888888888887
Q ss_pred HHh
Q 003872 437 MEG 439 (790)
Q Consensus 437 m~~ 439 (790)
...
T Consensus 396 ~l~ 398 (409)
T TIGR00540 396 SLG 398 (409)
T ss_pred HHH
Confidence 643
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1e-09 Score=101.30 Aligned_cols=290 Identities=14% Similarity=0.070 Sum_probs=147.0
Q ss_pred cCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CCCCH--HHHHHHHHHHHhcCChhHH
Q 003872 97 AGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELG-TSLSP--NVYDSVLVSLVRKKQLGLA 173 (790)
Q Consensus 97 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~ll~~~~~~~~~~~a 173 (790)
+.+.++|.++|-+|.+.+. -+.++..+|...|.+.|..++|+.+.+.+.++. ..... .+...|.+-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4577888888888877653 356677777888888888888888888777651 11111 1233444445555555555
Q ss_pred HHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChH
Q 003872 174 MSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLH 253 (790)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 253 (790)
..+|..+.+.+ ..-... ...|+..|-+..+|+
T Consensus 127 E~~f~~L~de~------------efa~~A------------------------------------lqqLl~IYQ~treW~ 158 (389)
T COG2956 127 EDIFNQLVDEG------------EFAEGA------------------------------------LQQLLNIYQATREWE 158 (389)
T ss_pred HHHHHHHhcch------------hhhHHH------------------------------------HHHHHHHHHHhhHHH
Confidence 55555554421 111223 334444455555555
Q ss_pred HHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003872 254 TSLRLFKEMKEKGLVPD----LHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIF 329 (790)
Q Consensus 254 ~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 329 (790)
+|+++-+++.+.+..+. ...|.-+...+....+++.|..++.+..+.+ +..+..--.+.+.+...|+++.|.+.+
T Consensus 159 KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~ 237 (389)
T COG2956 159 KAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEAL 237 (389)
T ss_pred HHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHH
Confidence 55555554444433222 1234444445555555555555555555442 222222223334555556666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 003872 330 SEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFV 409 (790)
Q Consensus 330 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (790)
+...+.+..--..+...|..+|...|+.++....+..+.+.. +....-..+-.......-.+.|..++.+-... .|
T Consensus 238 e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~P 313 (389)
T COG2956 238 ERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KP 313 (389)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CC
Confidence 555554332223344555555666666666666555555542 22222233333333333344444444333333 35
Q ss_pred CHhhHHHHHHHHHH---cCCHHHHHHHHHHHHhC
Q 003872 410 DGITFSIVVLQLCR---EGQIEEALRLVEEMEGR 440 (790)
Q Consensus 410 ~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~ 440 (790)
+...+..++..-.. .|...+-...++.|...
T Consensus 314 t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 314 TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 55555555554432 23344555555555543
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=1.9e-09 Score=102.85 Aligned_cols=287 Identities=14% Similarity=0.048 Sum_probs=179.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003872 249 WGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKI 328 (790)
Q Consensus 249 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 328 (790)
.|++..|+++..+-.+.+-. ....|..-..+.-..|+.+.+-+++.+..+.--.++....-+..+.....|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 47777777777776666533 33445555566667777777777777777653345556666666777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003872 329 FSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSC-------WTHNILIDGLFRNGRAEAAYTLFCD 401 (790)
Q Consensus 329 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~ 401 (790)
++++.+.+.. +........++|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777766433 5556677777777778887777777777777654333 3455555555555555555555555
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccch
Q 003872 402 LKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDV 481 (790)
Q Consensus 402 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 481 (790)
.... ..-++..-..++.-+.+.|+.++|.++.++..+++..|+.. ..-.+.+.++...-.+..++-.+.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~------ 323 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ------ 323 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh------
Confidence 4433 22244555556666677777777777777777666555411 112233344444333333332221
Q ss_pred HhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHH
Q 003872 482 LKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLAD 561 (790)
Q Consensus 482 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 561 (790)
T Consensus 324 -------------------------------------------------------------------------------- 323 (400)
T COG3071 324 -------------------------------------------------------------------------------- 323 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 003872 562 QVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGY 641 (790)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 641 (790)
.+.++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+
T Consensus 324 -------------------------h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 324 -------------------------HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGE 376 (400)
T ss_pred -------------------------CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCC
Confidence 1234566777777777777777777777766655 5777777777777777777
Q ss_pred HHHHHHHHHHHhhc
Q 003872 642 FNQAWGVLNEMGEK 655 (790)
Q Consensus 642 ~~~A~~~~~~m~~~ 655 (790)
..+|.+..++....
T Consensus 377 ~~~A~~~r~e~L~~ 390 (400)
T COG3071 377 PEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHHH
Confidence 77777777766543
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=1.9e-09 Score=102.90 Aligned_cols=126 Identities=14% Similarity=0.158 Sum_probs=65.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003872 626 NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLIN 705 (790)
Q Consensus 626 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~ 705 (790)
+..-.+++.-+..+|+.++|.++.++..+.+..|.. ...-.+.+.++.+.-.+..++..+..+. ++..+.+|..
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~ 336 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGR 336 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHH
Confidence 344444555555555555555555555555444431 1112234445555555555555544322 2244555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 706 VLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 706 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
.|.+.+.|.+|...|+...+ ..|+..+|+-+.+++.+.|+.++|.+..++-.
T Consensus 337 L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 337 LALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 55556666666666654444 35555556666666666666666555555544
No 56
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=4.7e-09 Score=97.94 Aligned_cols=455 Identities=13% Similarity=0.130 Sum_probs=278.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHH
Q 003872 126 LEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNE 205 (790)
Q Consensus 126 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (790)
+.-+....++..|+.+++--...+-....++-.-+..++.+.|++++|..++.-+... ..++...+-.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------------~~~~~el~vn 96 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------------DDAPAELGVN 96 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------------CCCCcccchh
Confidence 4455567888888888876655443333334444556778889999999998877664 4555566666
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 003872 206 LLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVG 285 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 285 (790)
|.-++.-.|.+.+|..+.....+ +.-.-..+.+...+.|+-++...+.+.+.+. ..---+|.......-
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~ 165 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRM 165 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHH
Confidence 77777778888888887655443 4444455667777888888888877776543 122333444444455
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 003872 286 KVKDALIVWEELKGSGHEPNEFTHRIII-QGCCKSYRMDDAMKIFSEMQYNGLIPDTV-VYNSLLNGMFKSRKVMEACQL 363 (790)
Q Consensus 286 ~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~l 363 (790)
.+.+|.+++..+... .|.....|.-+ -+|.+..-++-+.++++-..+. .||.. ..|.......+.=.-..|.+-
T Consensus 166 HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHH
Confidence 678999999998865 45555555444 4566777788888888877765 34443 344444333443333344444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003872 364 FEKMVQDGVRTSCWTHNILIDGLFRN-----GRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEME 438 (790)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 438 (790)
.+++..++-.. | -.+.-+++. .+-+.|++++--+.+. . +..--.|+--|.++++.++|..+.+++.
T Consensus 242 ~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 242 KKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred HHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcC
Confidence 55555443111 1 122333332 4557777777666554 2 2233345566778899999988877654
Q ss_pred hCCCccCHHHHHHHHHHHHhcCC-------chHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCC
Q 003872 439 GRGFVVDLVTISSLLIGFHKYGR-------WDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGD 511 (790)
Q Consensus 439 ~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 511 (790)
-. .|-......++ ++..|+ ...|.+.|+..-+++..-|.+
T Consensus 313 Pt--tP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI----------------------------- 359 (557)
T KOG3785|consen 313 PT--TPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTI----------------------------- 359 (557)
T ss_pred CC--ChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccc-----------------------------
Confidence 22 22223333332 333333 233444443333322211110
Q ss_pred hHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchH
Q 003872 512 LSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDI 591 (790)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (790)
T Consensus 360 -------------------------------------------------------------------------------- 359 (557)
T KOG3785|consen 360 -------------------------------------------------------------------------------- 359 (557)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGL 671 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 671 (790)
.--.++.+.+--..++++.+..++.+...-+..|...|| +..+++..|.+.+|.++|-.+....++.+..-...|..+|
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCy 438 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCY 438 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHH
Confidence 011234444445567888888888887776666666666 6788999999999999999887766664443345566788
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHH
Q 003872 672 GKMGRADLASTILDKLMKQGGGYLDVVMY-NTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFN 736 (790)
Q Consensus 672 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 736 (790)
.+.|.++.|..++-++ . -+.+..+. ..+..-|.+++.+=-|.+.|+.+... .|++..|.
T Consensus 439 i~nkkP~lAW~~~lk~---~-t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 439 IRNKKPQLAWDMMLKT---N-TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred HhcCCchHHHHHHHhc---C-CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 9999999997776443 2 22233333 34456677888888888888888764 56655553
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.2e-08 Score=101.62 Aligned_cols=287 Identities=13% Similarity=0.062 Sum_probs=223.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 003872 337 LIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSI 416 (790)
Q Consensus 337 ~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 416 (790)
..-+......-..-+....++.+..++.+...+.. ++....+..-|.++...|+...-..+=.++.+..+. .+.+|-.
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhh
Confidence 34466666677777888899999999999998864 566677777788999999998888888888887433 6778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccc
Q 003872 417 VVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRK 496 (790)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 496 (790)
+.--|...|+.++|.++|.+....... =...|-.+...|+-.|..|.|...+...-+--
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-------------------- 376 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-------------------- 376 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--------------------
Confidence 888888889999999999987654222 23567888889999999999988887655410
Q ss_pred cccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHH
Q 003872 497 SKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLA 576 (790)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 576 (790)
T Consensus 377 -------------------------------------------------------------------------------- 376 (611)
T KOG1173|consen 377 -------------------------------------------------------------------------------- 376 (611)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc-
Q 003872 577 RGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK- 655 (790)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 655 (790)
++..-|.. -+..-|.+.+.++.|.++|....... +.|+...+-+.-.....+.+.+|..+|+..+..
T Consensus 377 ---------~G~hlP~L--Ylgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 377 ---------PGCHLPSL--YLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI 444 (611)
T ss_pred ---------cCCcchHH--HHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence 00011222 24556778899999999999887665 667888888887788889999999999987622
Q ss_pred -CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003872 656 -FCP----TDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP 730 (790)
Q Consensus 656 -~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 730 (790)
.+. --..+++.|..+|.+.+.+++|+..+++.+.. .+.|..++.++.-.|...|+++.|...|++... +.|
T Consensus 445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p 520 (611)
T KOG1173|consen 445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKP 520 (611)
T ss_pred hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCC
Confidence 111 12346888999999999999999999999987 466888999999999999999999999999886 688
Q ss_pred ChHHHHHHHHHH
Q 003872 731 DVVTFNTLIEVN 742 (790)
Q Consensus 731 ~~~~~~~l~~~~ 742 (790)
+..+...++..+
T Consensus 521 ~n~~~~~lL~~a 532 (611)
T KOG1173|consen 521 DNIFISELLKLA 532 (611)
T ss_pred ccHHHHHHHHHH
Confidence 876666666543
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=1.3e-10 Score=117.80 Aligned_cols=288 Identities=14% Similarity=0.020 Sum_probs=170.7
Q ss_pred ChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhc
Q 003872 134 KIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKS 213 (790)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (790)
+..+|...|..+... ..-+..+...+.++|...+++++|..+|+.+.+.... ...+...|.+.+-.+.+.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~---------rv~~meiyST~LWHLq~~ 403 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY---------RVKGMEIYSTTLWHLQDE 403 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cccchhHHHHHHHHHHhh
Confidence 445666666664443 2234456666667777777777777777766554321 223445555554433221
Q ss_pred cchHHHHHHH-HHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 003872 214 DRRSEFKQVF-ERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVP-DLHTYNSLIQVLCVVGKVKDAL 291 (790)
Q Consensus 214 ~~~~~a~~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~ 291 (790)
- +..++ +.+.+ --+-...+|-++..+|.-+++.+.|++.|++..+. .| ...+|+.+.+-+.....+|.|.
T Consensus 404 v----~Ls~Laq~Li~--~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 404 V----ALSYLAQDLID--TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAM 475 (638)
T ss_pred H----HHHHHHHHHHh--hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHH
Confidence 1 11111 11111 11224567777777777777777777777777665 33 5667777767777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003872 292 IVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDG 371 (790)
Q Consensus 292 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~ 371 (790)
..|+...... +.+-..|-.+.-.|.+.++++.|+-.|+...+-+.. +.+....+...+-+.|+.++|++++++.....
T Consensus 476 ~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 476 KSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred HHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 7777766331 122234444555677777777777777777665322 44555566666667777777777777776654
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCc
Q 003872 372 VRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFV 443 (790)
Q Consensus 372 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 443 (790)
+.|+..---....+...+++++|+..++++++.-.. +...|..+...|.+.|+.+.|+.-|.-+.....+
T Consensus 554 -~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 554 -PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred -CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 224444444555666667777777777777665222 4455666667777777777777777776665433
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=4.6e-09 Score=102.44 Aligned_cols=420 Identities=12% Similarity=-0.007 Sum_probs=251.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCC-cchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCc-hh
Q 003872 160 VLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPG-CVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFD-IY 237 (790)
Q Consensus 160 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 237 (790)
..+-|.+.|.+++|+..+.+.++ ..|+ +.-|.....+|...|+++++.+.-....+ +.|+ +.
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~-------------l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE---l~P~Y~K 184 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIE-------------LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE---LNPDYVK 184 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHh-------------cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh---cCcHHHH
Confidence 34567889999999999999998 4555 77888899999999999999888887776 5566 45
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-CC--CCCCHHHHHHHHH
Q 003872 238 GYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKG-SG--HEPNEFTHRIIIQ 314 (790)
Q Consensus 238 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g--~~~~~~~~~~li~ 314 (790)
.+..-.+++-..|++++|+.=+....-.|-.-+..+--.+=+.+- ..|....++-.+ .+ +-|+.....+...
T Consensus 185 Al~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 185 ALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred HHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 666667777788888877643222221111112111111111111 122222222222 22 2334333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCC-CC-----CCHHH----HHHHH
Q 003872 315 GCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFK-SRKVMEACQLFEKMVQDG-VR-----TSCWT----HNILI 383 (790)
Q Consensus 315 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~l~~~~~~~~-~~-----~~~~~----~~~li 383 (790)
.+...- ...+...+-..|...-..+=..+.. ...+..|.+.+.+-.... .. .|... -..++
T Consensus 260 sF~~~~--------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 260 SFHADP--------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred hccccc--------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 321100 0000000000011111111111111 012222222222211100 00 11111 11111
Q ss_pred H--HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCC
Q 003872 384 D--GLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGR 461 (790)
Q Consensus 384 ~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 461 (790)
. -+.-.|+.-.|..-|+........++. .|-.+...|....+.++....|.+..+.... ++.+|..-.+.+.-.++
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHH
Confidence 1 123457888888888888877554333 2666777888889999999999998877544 66677777777777788
Q ss_pred chHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccc
Q 003872 462 WDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEG 541 (790)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (790)
++.|..-|++...-
T Consensus 410 ~e~A~aDF~Kai~L------------------------------------------------------------------ 423 (606)
T KOG0547|consen 410 YEEAIADFQKAISL------------------------------------------------------------------ 423 (606)
T ss_pred HHHHHHHHHHHhhc------------------------------------------------------------------
Confidence 88888888877651
Q ss_pred cccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003872 542 SQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMG 621 (790)
Q Consensus 542 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 621 (790)
.|.+...|..+.-+.-+.++++++...|++..+.
T Consensus 424 ---------------------------------------------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk- 457 (606)
T KOG0547|consen 424 ---------------------------------------------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK- 457 (606)
T ss_pred ---------------------------------------------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 2334444555555566778999999999998876
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-----CHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 003872 622 VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT-----DIA--TYNVVIQGLGKMGRADLASTILDKLMKQGGGY 694 (790)
Q Consensus 622 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 694 (790)
++..+..|+-....+...+++++|.+.|+..++....- ++. +.-+++-.-. .+++..|..++.++.+.. +
T Consensus 458 FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D--p 534 (606)
T KOG0547|consen 458 FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD--P 534 (606)
T ss_pred CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC--c
Confidence 36677889999999999999999999999988753221 111 2222222222 389999999999998853 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 695 LDVVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 695 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
-....|.+|...-.+.|++++|+.+|++...
T Consensus 535 kce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 535 KCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3556899999999999999999999998765
No 60
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=2.8e-10 Score=115.52 Aligned_cols=158 Identities=17% Similarity=0.128 Sum_probs=75.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYN---SMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG 670 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 670 (790)
|+-+..-+.....+|.|...|+..+ ..++..|+ -|...|.+.++++.|+-.|+++.+-. +-+.+....+...
T Consensus 458 yTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~ 532 (638)
T KOG1126|consen 458 YTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRI 532 (638)
T ss_pred hhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHH
Confidence 3333344444445555555555444 22333333 23344555555555555555555542 2234444444555
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHH
Q 003872 671 LGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLK 749 (790)
Q Consensus 671 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~ 749 (790)
+.+.|+.++|+++++++.... +.|+..--..+..+...+++++|++.++++.+. .|+ ...|..+...|.+.|+.+
T Consensus 533 ~~~~k~~d~AL~~~~~A~~ld--~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 533 QHQLKRKDKALQLYEKAIHLD--PKNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHhhhhhHHHHHHHHHHhcC--CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccch
Confidence 555555555555555555443 112222222333444455555555555555552 332 444555555555555555
Q ss_pred HHHHHHHHHHh
Q 003872 750 EAHYFLKMMLD 760 (790)
Q Consensus 750 ~A~~~~~~m~~ 760 (790)
.|+.-|--+.+
T Consensus 609 ~Al~~f~~A~~ 619 (638)
T KOG1126|consen 609 LALLHFSWALD 619 (638)
T ss_pred HHHHhhHHHhc
Confidence 55555555543
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.27 E-value=7.1e-07 Score=90.86 Aligned_cols=190 Identities=9% Similarity=0.004 Sum_probs=85.9
Q ss_pred HhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 003872 211 RKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDA 290 (790)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 290 (790)
...|+-++|....+.-.. +-.-+.+.|..+.-.+....++++|++.|......+.. |...+.-+.-.-++.++++..
T Consensus 52 ~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhH
Confidence 344444444444443332 11223444555555555555555555555555544322 344444444444444555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHH
Q 003872 291 LIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNG-LIPDTVVYNSLL------NGMFKSRKVMEACQL 363 (790)
Q Consensus 291 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li------~~~~~~~~~~~a~~l 363 (790)
......+.+.. +.....|..+..++.-.|+...|..++++..+.. -.|+...+.... ....+.|..+.|++.
T Consensus 129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 55544444431 2223445555555555566666666665555432 123333332222 122344555555554
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003872 364 FEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK 405 (790)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 405 (790)
+..-... +.-....-..-...+.+.+++++|..++..+...
T Consensus 208 L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 208 LLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 4433221 1101111122234455566666666666666655
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.9e-11 Score=83.78 Aligned_cols=50 Identities=52% Similarity=0.730 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 003872 695 LDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGK 744 (790)
Q Consensus 695 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 744 (790)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||++|+++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888887764
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.26 E-value=2.9e-06 Score=86.57 Aligned_cols=478 Identities=12% Similarity=0.071 Sum_probs=265.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcc
Q 003872 122 FKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCV 201 (790)
Q Consensus 122 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (790)
|..++..| ..+++...+.+.+.+.+. .+-..++.....-.+...|+.++|....+..++. ...+.+
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~------------d~~S~v 76 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN------------DLKSHV 76 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhcc------------Ccccch
Confidence 33444443 446666666666666663 3334444444444556667777777666655543 455566
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003872 202 ACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVL 281 (790)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 281 (790)
+|..+.-.+....++++|+..|...... -+-|...|.-+.-.-.+.|+++........+.+.... ....|..+..++
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQ 153 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHH
Confidence 6777766677777777777777777641 2224455555555556667777777777777665211 334556666666
Q ss_pred HhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHh
Q 003872 282 CVVGKVKDALIVWEELKGSG-HEPNEFTHRIII------QGCCKSYRMDDAMKIFSEMQYNGLIPDTVVY-NSLLNGMFK 353 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~ 353 (790)
.-.|+...|..++++..+.. -.|+...+.... ......|..+.|.+.+..-... ..|...+ ..-...+.+
T Consensus 154 ~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 154 HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHH
Confidence 67788888888888776653 235555444332 2334567777777777655432 1233332 233455678
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHH-HHHHHHHhCCCCCCHhhHHHH-HHHHHHcCCHHHH
Q 003872 354 SRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLF-RNGRAEAAY-TLFCDLKKKGKFVDGITFSIV-VLQLCREGQIEEA 430 (790)
Q Consensus 354 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a 430 (790)
.+++++|..++..+...+ ||..-|...+..+. +-.+.-++. .+|....+.-.. ...-..+ +....-..-.+..
T Consensus 232 l~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r--~e~p~Rlplsvl~~eel~~~v 307 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR--HECPRRLPLSVLNGEELKEIV 307 (700)
T ss_pred HhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc--cccchhccHHHhCcchhHHHH
Confidence 888999999999888874 66666665554443 333333333 555555443111 1110001 1111112223445
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCC
Q 003872 431 LRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKG 510 (790)
Q Consensus 431 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 510 (790)
-.++..+.++|+++-... +...|-.....+ +++++.- .|.+.-.
T Consensus 308 dkyL~~~l~Kg~p~vf~d---l~SLyk~p~k~~----~le~Lvt---------------~y~~~L~-------------- 351 (700)
T KOG1156|consen 308 DKYLRPLLSKGVPSVFKD---LRSLYKDPEKVA----FLEKLVT---------------SYQHSLS-------------- 351 (700)
T ss_pred HHHHHHHhhcCCCchhhh---hHHHHhchhHhH----HHHHHHH---------------HHHhhcc--------------
Confidence 566777788887654333 333332222111 2222211 0100000
Q ss_pred ChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcch
Q 003872 511 DLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFD 590 (790)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (790)
... +. . ........++.
T Consensus 352 ----------~~~------------~f------------------------------------~-----~~D~~~~E~Pt 368 (700)
T KOG1156|consen 352 ----------GTG------------MF------------------------------------N-----FLDDGKQEPPT 368 (700)
T ss_pred ----------ccc------------CC------------------------------------C-----cccccccCCch
Confidence 000 00 0 00000011333
Q ss_pred HHHHH--HHHHHHHHcCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 591 IDMVN--TFLSIFLAKGKLNLACKLFEIFTDMGVHPVN-YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 591 ~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.+|. -++.-|-..|+++.|...++..+.. .|+. ..|..-.+.+..+|++++|..++++..+... +|..+-.--
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKc 445 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKC 445 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHH
Confidence 33433 4667788899999999999988865 3443 3455555788899999999999999888643 455544455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCC-CCCCHH----HHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGG-GYLDVV----MYNTL--INVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~-~~p~~~----~~~~l--i~~~~~~g~~~~A~~~~~~m~ 724 (790)
..-..++.+.++|.++.....+.+. ...|.. .|-.+ ..+|.+.|++..|++-|....
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 5566778889999988887666551 111111 22222 345666777777766555543
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.22 E-value=4.5e-06 Score=87.01 Aligned_cols=436 Identities=16% Similarity=0.074 Sum_probs=240.9
Q ss_pred CCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHH
Q 003872 232 FEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNE-FTHR 310 (790)
Q Consensus 232 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~ 310 (790)
+..+...|..+.-+....|+++.+.+.|++.... ..-....|..+-..|...|.-..|..+++.-....-.|+. ..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4456777777777888888888888888887654 2335667777777888888888888888776544222433 3333
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCC
Q 003872 311 IIIQGCC-KSYRMDDAMKIFSEMQYN--GL--IPDTVVYNSLLNGMFKS-----------RKVMEACQLFEKMVQDGVRT 374 (790)
Q Consensus 311 ~li~~~~-~~~~~~~a~~~~~~m~~~--~~--~p~~~~~~~li~~~~~~-----------~~~~~a~~l~~~~~~~~~~~ 374 (790)
..-..|. +.+..++++++-.+.... +. ......|..+.-+|... ....++++.+++..+.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 2233333 345666666666655541 11 11222333333333211 12345677777776654 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003872 375 SCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLI 454 (790)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 454 (790)
|......+.--|+..++++.|++..++..+.+..-+...|..|.-.+...+++.+|+.+.+..... ..-|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhh
Confidence 333333344456667888888888888888765667788888888888888888888888776544 1111111111122
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCC
Q 003872 455 GFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGE 534 (790)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (790)
.-...++.+++.....++..- |... |+-.-.+++....-
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~--------we~~------------------~~~q~~~~~g~~~~--------------- 594 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLAL--------WEAE------------------YGVQQTLDEGKLLR--------------- 594 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHH--------HHhh------------------hhHhhhhhhhhhhh---------------
Confidence 222356666666665555430 0000 00000000000000
Q ss_pred CCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHH-HcCChHHHHHH
Q 003872 535 GDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFL-AKGKLNLACKL 613 (790)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~ 613 (790)
+.-+..... +-....+..+..+..... +.........
T Consensus 595 ----------------------------------------lk~~l~la~-~q~~~a~s~sr~ls~l~a~~~~~~~se~~- 632 (799)
T KOG4162|consen 595 ----------------------------------------LKAGLHLAL-SQPTDAISTSRYLSSLVASQLKSAGSELK- 632 (799)
T ss_pred ----------------------------------------hhcccccCc-ccccccchhhHHHHHHHHhhhhhcccccc-
Confidence 000000000 000000111111111111 0000000000
Q ss_pred HHHHHhCCCCCCh--------hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 614 FEIFTDMGVHPVN--------YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILD 685 (790)
Q Consensus 614 ~~~~~~~g~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 685 (790)
+...-+.|.. ..|......+.+.+..++|..-+.+..+. .+.....|.-....+...|..++|.+.|.
T Consensus 633 ---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 633 ---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 1111111211 23444555667778888887777776665 23345566666666777888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 686 KLMKQGGGYLDVVMYNTLINVLGKAGRFDEANM--LFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 686 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
....-. +-++.+..++..++...|+..-|.. ++..+.+.+ +-+...|-.+...+-+.|+.+.|.+.|....+
T Consensus 709 ~Al~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 709 VALALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHhcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 877743 2245567788888888888777777 888888754 23678888888888999999988888887764
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=8.8e-09 Score=111.99 Aligned_cols=165 Identities=10% Similarity=0.046 Sum_probs=102.5
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
.++..+..+...+...|++++|...++...+.. +.+...+..++..+...|++++|+..++++.+...+.+...+..+.
T Consensus 370 ~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la 448 (553)
T PRK12370 370 ISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQV 448 (553)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence 355566677777888888888888888887764 2222333344445666788888888888877653233455566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCChHHHHHHHHHHhccCC
Q 003872 669 QGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT-SGINPDVVTFNTLIEVNGKAGR 747 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~ 747 (790)
.++...|+.++|...++++.... +.+....+.+...|+..| ++|...++.+.+ ..-.|...-+..+ .+.-.|+
T Consensus 449 ~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~ 522 (553)
T PRK12370 449 MFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGE 522 (553)
T ss_pred HHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhh
Confidence 77888888888888888765542 223344455555666666 477777777665 2223333333333 3344455
Q ss_pred HHHHHHHHHHHHhC
Q 003872 748 LKEAHYFLKMMLDS 761 (790)
Q Consensus 748 ~~~A~~~~~~m~~~ 761 (790)
-+.+..+ +++.+.
T Consensus 523 ~~~~~~~-~~~~~~ 535 (553)
T PRK12370 523 AIAEKMW-NKFKNE 535 (553)
T ss_pred hHHHHHH-HHhhcc
Confidence 5555555 777654
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=9.8e-09 Score=99.43 Aligned_cols=167 Identities=14% Similarity=0.107 Sum_probs=132.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCCHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFC-PTDIATYNVVI 668 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li 668 (790)
+...+..+...+...|++++|.+.++...+.. +.+...+..+...+...|++++|...+++..+... +.....+..+.
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 142 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAG 142 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 34556677788888899999999998887765 44567777888888999999999999999886522 22345667778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCH
Q 003872 669 QGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL 748 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 748 (790)
..+...|++++|...+++..... +.+...+..+...+...|++++|...+++.... ...+...+..++..+...|+.
T Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 219 (234)
T TIGR02521 143 LCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDV 219 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhH
Confidence 88899999999999999988764 345667888888899999999999999998875 344567777888888899999
Q ss_pred HHHHHHHHHHHh
Q 003872 749 KEAHYFLKMMLD 760 (790)
Q Consensus 749 ~~A~~~~~~m~~ 760 (790)
++|..+.+.+.+
T Consensus 220 ~~a~~~~~~~~~ 231 (234)
T TIGR02521 220 AAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh
Confidence 999998888764
No 67
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=7.6e-06 Score=87.34 Aligned_cols=159 Identities=13% Similarity=0.056 Sum_probs=119.5
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
..+.+|..+..+-.+.|.+.+|.+-|=+ ..|+..|...++...+.|.+++-...+....++.-.|.+. ..||
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELI 1173 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHH
Confidence 3677899999999999999988766533 3466788899999999999999999988888776666554 4788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCH
Q 003872 669 QGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL 748 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 748 (790)
-+|++.+++.+-++++ ..||......+.+-|...|.++.|.-+|... ..|..|...+.+.|.+
T Consensus 1174 ~AyAkt~rl~elE~fi--------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFI--------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEY 1236 (1666)
T ss_pred HHHHHhchHHHHHHHh--------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHH
Confidence 8899999888766655 3478888888888888888888887777643 3467777788888888
Q ss_pred HHHHHHHHHHHhCCCCCCccchhHHHHHHH
Q 003872 749 KEAHYFLKMMLDSGCTPNHVTDTTLDFLGR 778 (790)
Q Consensus 749 ~~A~~~~~~m~~~~~~p~~~t~~~l~~l~~ 778 (790)
..|.....+.- +..||....+.|-
T Consensus 1237 Q~AVD~aRKAn------s~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1237 QGAVDAARKAN------STKTWKEVCFACV 1260 (1666)
T ss_pred HHHHHHhhhcc------chhHHHHHHHHHh
Confidence 77766555443 5556666555443
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.20 E-value=1.4e-06 Score=91.31 Aligned_cols=260 Identities=15% Similarity=0.128 Sum_probs=186.3
Q ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHHh--
Q 003872 207 LVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLI-QVLCV-- 283 (790)
Q Consensus 207 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~-- 283 (790)
...+...|++++|++.++.-.. .+.............+.+.|+.++|..+|..+.+.+ |+...|-..+ .+..-
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 3556788999999999987653 355456677888899999999999999999999984 5655555444 44422
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003872 284 ---VGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRM-DDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVME 359 (790)
Q Consensus 284 ---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 359 (790)
..+.+...++++++... -|.......+.-.+.....+ ..+..++..+...|+++ +|+.|-..|.......-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 23578888999988765 34433333332222222233 34556677777888653 45555555665555555
Q ss_pred HHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 003872 360 ACQLFEKMVQD----G----------VRTSC--WTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCR 423 (790)
Q Consensus 360 a~~l~~~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 423 (790)
..+++...... + -.|+. +++..+...|-..|+++.|++++++..+.... .+..|..-.+.+-.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence 56666655432 1 13444 45567778888999999999999999988432 36678888889999
Q ss_pred cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 003872 424 EGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNL 477 (790)
Q Consensus 424 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (790)
.|++++|...++........ |...-+..+..+.+.|++++|..++......+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999999988555 778888888999999999999999988766543
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.20 E-value=9.5e-07 Score=91.82 Aligned_cols=128 Identities=16% Similarity=0.109 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK 673 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 673 (790)
|......+.+.+..++|...+.+..... +.....|......+...|..++|.+.|....... +.++.+..++..++.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445556666667777765555555443 4455666666667777788888888887777652 2245566777777777
Q ss_pred cCCHHHHHH--HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 674 MGRADLAST--ILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 674 ~g~~~~A~~--~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
.|+...|.. ++.++.+.+ +-+...|-.+...+-+.|+.++|..-|....+
T Consensus 731 ~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred hCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 777776666 777777764 44667777777777788888888888777665
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.20 E-value=1.3e-08 Score=98.58 Aligned_cols=197 Identities=14% Similarity=0.026 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCc
Q 003872 121 TFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGC 200 (790)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (790)
.+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++.++. .+.+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------~~~~~ 99 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL------------NPNNG 99 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------CCCCH
Confidence 34444444444444444444444444332 122334444444444444444444444444432 11122
Q ss_pred chHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 003872 201 VACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQV 280 (790)
Q Consensus 201 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 280 (790)
..+..+...+...|++++|.+.++........+.....+..+...+...|++++|...+++..+.... +...+..+...
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHH
Confidence 23333334444444444444444444331111112233344444445555555555555555443211 23344444455
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 281 LCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEM 332 (790)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 332 (790)
+...|++++|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+
T Consensus 179 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 179 YYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555555555554443 1223334444444444455555555444444
No 71
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=6e-06 Score=86.16 Aligned_cols=319 Identities=17% Similarity=0.151 Sum_probs=185.6
Q ss_pred HHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-C-------CCCCHHHHHHHHHHHH
Q 003872 94 VCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEEL-G-------TSLSPNVYDSVLVSLV 165 (790)
Q Consensus 94 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-------~~~~~~~~~~ll~~~~ 165 (790)
|..-|+.+.|.+-.+.+. +..+|..+.+.|.+.++.+-|.-.+..|... | ...+...-........
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 344567777766665443 3447788888888888877777666655432 1 1111123333444456
Q ss_pred hcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 003872 166 RKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHA 245 (790)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 245 (790)
..|.+++|+.++++..+ |..|=..|-..|.+++|.++-+.-.. +.. ..||..-...
T Consensus 812 eLgMlEeA~~lYr~ckR--------------------~DLlNKlyQs~g~w~eA~eiAE~~DR---iHL-r~Tyy~yA~~ 867 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR--------------------YDLLNKLYQSQGMWSEAFEIAETKDR---IHL-RNTYYNYAKY 867 (1416)
T ss_pred HHhhHHHHHHHHHHHHH--------------------HHHHHHHHHhcccHHHHHHHHhhccc---eeh-hhhHHHHHHH
Confidence 67888888888877654 33344566777888888777654321 211 2344444555
Q ss_pred HhccCChHHHHHHHHHHH----------HCCC---------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003872 246 FGCWGDLHTSLRLFKEMK----------EKGL---------VPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNE 306 (790)
Q Consensus 246 ~~~~g~~~~a~~~~~~m~----------~~g~---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 306 (790)
+-..+|.+.|++.|++.. ...+ ..|...|.-....+-..|+++.|+.+|....
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-------- 939 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-------- 939 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------
Confidence 555677777777776532 1100 1122333333334445667777777766654
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003872 307 FTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGL 386 (790)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~ 386 (790)
-|-.+++..|-.|+.++|-++-++- -|......|.+.|...|++.+|...|.+... +...|+.|
T Consensus 940 -D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlc 1003 (1416)
T KOG3617|consen 940 -DYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLC 1003 (1416)
T ss_pred -hhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHH
Confidence 2556677777778888887766543 2566677788888888888888888876542 22233322
Q ss_pred HHc---------------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH--------HHhC--C
Q 003872 387 FRN---------------GRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEE--------MEGR--G 441 (790)
Q Consensus 387 ~~~---------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~--------m~~~--~ 441 (790)
-.. .+.-.|-.+|++. |. -+...+..|-+.|.+.+|+++--+ ++.. .
T Consensus 1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd 1075 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD 1075 (1416)
T ss_pred HhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC
Confidence 221 1222233333332 11 123344556677777777665322 1222 3
Q ss_pred CccCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 003872 442 FVVDLVTISSLLIGFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 442 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (790)
...|+...+.-...|....++++|..++-..++
T Consensus 1076 ~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1076 AGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344677777777888888888988888776655
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=5.4e-11 Score=81.48 Aligned_cols=49 Identities=37% Similarity=0.606 Sum_probs=29.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 003872 624 PVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLG 672 (790)
Q Consensus 624 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 672 (790)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555566666666666666666666666666666666666666665554
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.17 E-value=2.1e-08 Score=109.12 Aligned_cols=251 Identities=10% Similarity=-0.007 Sum_probs=172.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 003872 356 KVMEACQLFEKMVQDGVRTSCWTHNILIDGLF---------RNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQ 426 (790)
Q Consensus 356 ~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 426 (790)
+.++|..+|++..+.. +-+...|..+..++. ..+++++|...+++..+.+.. +...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 4577888888887753 223445555544443 224478899999988887544 66777778788888999
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCC
Q 003872 427 IEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMF 506 (790)
Q Consensus 427 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 506 (790)
+++|...++++.+.+.. +...+..+...+...|++++|...+++..+.+.
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P----------------------------- 403 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDP----------------------------- 403 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----------------------------
Confidence 99999999999887533 567788888889999999999999998877321
Q ss_pred CCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCC
Q 003872 507 PYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGM 586 (790)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (790)
T Consensus 404 -------------------------------------------------------------------------------- 403 (553)
T PRK12370 404 -------------------------------------------------------------------------------- 403 (553)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003872 587 GTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV 666 (790)
Q Consensus 587 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 666 (790)
.++..+..++..+...|++++|...+++..+...+-++..+..+..++...|++++|...+.++... .+.+....+.
T Consensus 404 --~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~ 480 (553)
T PRK12370 404 --TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNL 480 (553)
T ss_pred --CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHH
Confidence 1222222334445567889999999988876542224555777788888999999999999887654 2223444556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 667 VIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
+...|...| +.|...++.+.+.....+....+..+ .|.-.|+.+.+..+ +++.+.
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhcc
Confidence 666677777 47888777777654334444444333 45556776666665 777764
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=5.6e-09 Score=96.40 Aligned_cols=233 Identities=11% Similarity=-0.013 Sum_probs=180.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003872 309 HRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFR 388 (790)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~ 388 (790)
-+.+.++|.+.|.+.+|.+.|+...+. .|-+.||..|-+.|.+..+.+.|+.++.+-.+. ++-++.....+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 367788999999999999999988876 567778888999999999999999999988775 23344444556777888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHH
Q 003872 389 NGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERL 468 (790)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 468 (790)
.++.++|.++++...+... .++.....+...|.-.++++.|+.+++++++.|+. ++..|..+.-+|.-.+++|.+..-
T Consensus 303 m~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 8999999999999888743 36667777777888889999999999999999988 888999999999999999988888
Q ss_pred HHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCC
Q 003872 469 MKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSD 548 (790)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (790)
|.+...--..|
T Consensus 381 f~RAlstat~~--------------------------------------------------------------------- 391 (478)
T KOG1129|consen 381 FQRALSTATQP--------------------------------------------------------------------- 391 (478)
T ss_pred HHHHHhhccCc---------------------------------------------------------------------
Confidence 87766522111
Q ss_pred CCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhh
Q 003872 549 EWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYT 628 (790)
Q Consensus 549 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 628 (790)
..-.++|-.+.......|++..|.+-|+...... ..+...
T Consensus 392 ---------------------------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ea 431 (478)
T KOG1129|consen 392 ---------------------------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEA 431 (478)
T ss_pred ---------------------------------------chhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHH
Confidence 1134556666666677788888888888777665 445567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003872 629 YNSMMSSFVKKGYFNQAWGVLNEMGEK 655 (790)
Q Consensus 629 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 655 (790)
++.|.-.-.+.|+.++|..++....+.
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 777776677778888888887776654
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=1.7e-08 Score=93.33 Aligned_cols=231 Identities=11% Similarity=-0.014 Sum_probs=186.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003872 239 YNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCK 318 (790)
Q Consensus 239 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 318 (790)
-+.+.++|.+.|.+.+|.+.++.-.+. .|-+.||..|-.+|.+..++..|+.++.+-.+. ++-++.....+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 356888899999999999999888877 677778888889999999999999999888765 24444444566677888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003872 319 SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTL 398 (790)
Q Consensus 319 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 398 (790)
.++.++|.++++...+.. +.++....++...|.-.++.+.|+..|+.+...|+. +...|+.+.-+|.-.++++.++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 899999999999988764 336666777777888889999999999999999864 778888888888889999999999
Q ss_pred HHHHHhCCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 003872 399 FCDLKKKGKFVDG--ITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDG 475 (790)
Q Consensus 399 ~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (790)
|++....--.|+. ..|..+-......|++..|.+.|+-.+..... +...++.|.-.-.+.|++++|..+++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9888776444443 44666777777889999999999988877444 6778888888889999999999999877653
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2.3e-06 Score=86.30 Aligned_cols=129 Identities=14% Similarity=0.107 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHH--------HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCC
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFE--------IFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK--FCPTD 660 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~--------~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~ 660 (790)
..+.-..+......|+++.|++++. .+.+.+..|-. ..++...+.+.++-+.|..++.+.++. .-.+.
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~ 453 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG 453 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhccc
Confidence 3445566777788899999999888 55555555544 445666777777777677776666432 01112
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 661 IA----TYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 661 ~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
.. ++.-+...-.+.|+-++|..+++++.+. .++|..+...++.+|++. +++.|..+-..+.
T Consensus 454 s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 454 SIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 22 3333333445679999999999999987 468889999999999887 6888888765543
No 77
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.09 E-value=1.8e-06 Score=88.64 Aligned_cols=137 Identities=13% Similarity=0.123 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 003872 593 MVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLG 672 (790)
Q Consensus 593 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 672 (790)
.|.+-..-+-+.|++.+|.+++-.+. .|+ .-|.+|-+.|..+..+++.++-.-. .-..|.-.+..-|.
T Consensus 826 ~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e 893 (1636)
T KOG3616|consen 826 LYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELE 893 (1636)
T ss_pred HHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHH
Confidence 34444455555666666666553322 343 2355667777777666665543211 11234555666677
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHH
Q 003872 673 KMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAH 752 (790)
Q Consensus 673 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 752 (790)
..|++..|..-|-+..+ |.+-++.|-.++.|++|-++-+ ..|- .|..-...++.+-.--| +-|.
T Consensus 894 ~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriak---tegg-~n~~k~v~flwaksigg--daav 957 (1636)
T KOG3616|consen 894 AEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAK---TEGG-ANAEKHVAFLWAKSIGG--DAAV 957 (1636)
T ss_pred hccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHh---cccc-ccHHHHHHHHHHHhhCc--HHHH
Confidence 77888888777644321 4455666777777777766643 2222 24443444444444444 4567
Q ss_pred HHHHH
Q 003872 753 YFLKM 757 (790)
Q Consensus 753 ~~~~~ 757 (790)
+++++
T Consensus 958 kllnk 962 (1636)
T KOG3616|consen 958 KLLNK 962 (1636)
T ss_pred HHHHh
Confidence 77765
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.08 E-value=1.1e-07 Score=98.17 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----C-CCC-
Q 003872 629 YNSMMSSFVKKGYFNQAWGVLNEMGEK---FCPTD----IATYNVVIQGLGKMGRADLASTILDKLMKQG----G-GYL- 695 (790)
Q Consensus 629 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~-~~p- 695 (790)
++.+...+...+++++|..++....+. -+.++ ..+++.|...|.+.|++++|.+++++++... + ..+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 344445556666666666666654332 11222 3477888888888888888888888877653 1 122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC-CCC-hHHHHHHHHHHhccCCHHHHHHHHHHHH---hCCCCCC
Q 003872 696 DVVMYNTLINVLGKAGRFDEANMLFEQMRT----SGI-NPD-VVTFNTLIEVNGKAGRLKEAHYFLKMML---DSGCTPN 766 (790)
Q Consensus 696 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~---~~~~~p~ 766 (790)
....++.|...|.+.+++++|.++|.+... .|. .|+ ..+|..|..+|.+.|+++.|+++.+... +.+..+.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~ 487 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTA 487 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCC
Confidence 245677888889889999999998887653 222 222 5788999999999999999999988875 3444444
Q ss_pred ccc
Q 003872 767 HVT 769 (790)
Q Consensus 767 ~~t 769 (790)
..+
T Consensus 488 ~~~ 490 (508)
T KOG1840|consen 488 SPT 490 (508)
T ss_pred Ccc
Confidence 443
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=2e-07 Score=82.53 Aligned_cols=209 Identities=14% Similarity=-0.031 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCc
Q 003872 121 TFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGC 200 (790)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (790)
+...|.-.|...|++..|..-+++.++.+. .+..++..+...|-+.|+.+.|.+.|++.++. .+.+-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl------------~p~~G 103 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSL------------APNNG 103 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc------------CCCcc
Confidence 455666777777888888888887777652 24456777777777788888888888777765 45556
Q ss_pred chHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 003872 201 VACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQV 280 (790)
Q Consensus 201 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 280 (790)
.+.|.....+|..|++++|...|++.........-..+|..+.-+..+.|+++.|...|++..+.... ...+...+...
T Consensus 104 dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~ 182 (250)
T COG3063 104 DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARL 182 (250)
T ss_pred chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHH
Confidence 67777777788888888888888887775445555678888888888899999999999988877433 45667778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003872 281 LCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNS 346 (790)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 346 (790)
..+.|++..|...++.....+. ++..+.-..|+.-...|+-+.+.++=.++.+. .|...-|..
T Consensus 183 ~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 183 HYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 8889999999999888887774 88888888888888888888888777776654 455555443
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.07 E-value=6.3e-07 Score=93.92 Aligned_cols=261 Identities=14% Similarity=0.071 Sum_probs=140.6
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRK- 167 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~- 167 (790)
-...++...|++++|++.++.-... +.............+.+.|+.++|..+|..+...++ .+..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhc
Confidence 3456778889999999999775544 343456667788888999999999999999999872 2444455555555222
Q ss_pred ----CChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchH-HHHHHHHHHHhcCCCCCchhhHHHH
Q 003872 168 ----KQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRS-EFKQVFERLKEQKEFEFDIYGYNIC 242 (790)
Q Consensus 168 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l 242 (790)
.+.+....+++++... -|.......+.-.+.....+. .+...+..+.. .|+|+ +++.|
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~-------------yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~-KgvPs---lF~~l 149 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEK-------------YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR-KGVPS---LFSNL 149 (517)
T ss_pred ccccccHHHHHHHHHHHHHh-------------CccccchhHhhcccCCHHHHHHHHHHHHHHHHh-cCCch---HHHHH
Confidence 2456666777766553 222222222222222211222 22333333443 44432 33344
Q ss_pred HHHHhccCChHHHHHHHHHHHHC----C----------CCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 003872 243 IHAFGCWGDLHTSLRLFKEMKEK----G----------LVPDL--HTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPN- 305 (790)
Q Consensus 243 i~~~~~~g~~~~a~~~~~~m~~~----g----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~- 305 (790)
-..|......+-..+++...... + -.|.. .++..+...|-..|++++|++.+++..+. .|+
T Consensus 150 k~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~ 227 (517)
T PF12569_consen 150 KPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTL 227 (517)
T ss_pred HHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCc
Confidence 44444333444444444443321 1 01222 12333445555566666666666666555 333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003872 306 EFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDG 371 (790)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~ 371 (790)
+..|..-.+.+-+.|++++|.+.++........ |...-+..+..+.+.|++++|.+++......+
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 445555555666666666666666666554332 44444455555566666666666666555444
No 81
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=3.7e-05 Score=82.33 Aligned_cols=186 Identities=11% Similarity=0.061 Sum_probs=106.1
Q ss_pred CcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-----------CCCCCHHHHHHHHHHHHhc
Q 003872 99 FLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEEL-----------GTSLSPNVYDSVLVSLVRK 167 (790)
Q Consensus 99 ~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~ll~~~~~~ 167 (790)
.++++.+.++.|...++..+..+...+..-|...=-.+..+++|+..... ++..|+++.-..+.+.|+.
T Consensus 658 sve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt 737 (1666)
T KOG0985|consen 658 SVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKT 737 (1666)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhh
Confidence 55667777777777777777777777777777776677778888877643 3567888888999999999
Q ss_pred CChhHHHHHHHHHHHHh----ccCCCCCcccccCCCc-----chHHHHHHHHHhccchHHHHHHHHHHHhcCCCCC----
Q 003872 168 KQLGLAMSILFKLLEAC----NDNTADNSVVESLPGC-----VACNELLVALRKSDRRSEFKQVFERLKEQKEFEF---- 234 (790)
Q Consensus 168 ~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 234 (790)
|++.+...+.++----. .....+....+..|-. ..+-.=+-.|.-.++..+-+++|-+-.. .+-.|
T Consensus 738 ~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvN-ps~~p~VvG 816 (1666)
T KOG0985|consen 738 GQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVN-PSRTPQVVG 816 (1666)
T ss_pred ccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcC-Ccccchhhh
Confidence 99999887765420000 0000000000122211 1121222223333333333443333221 11111
Q ss_pred -------c-hhhH------------HHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 003872 235 -------D-IYGY------------NICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGK 286 (790)
Q Consensus 235 -------~-~~~~------------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 286 (790)
+ ...- .-|..-.-+.+++.-...+++...+.|.. |..++|+|...|...++
T Consensus 817 ~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNN 887 (1666)
T KOG0985|consen 817 ALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNN 887 (1666)
T ss_pred hhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCC
Confidence 1 1111 22233344556666667777888888877 88999999888776543
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=6.4e-06 Score=83.17 Aligned_cols=451 Identities=15% Similarity=0.065 Sum_probs=254.3
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH--h
Q 003872 206 LLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLC--V 283 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~ 283 (790)
=++.+...+++++|.+....+.. ..+-+...+..-+-+..+.+.+++|+.+.+.-... ..+..-+ +=.+|| +
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yr 91 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYR 91 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHH
Confidence 35566778899999999999985 34556677777777888889999999665543211 1111111 234444 6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003872 284 VGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQL 363 (790)
Q Consensus 284 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l 363 (790)
.+..++|+..++-.. +.+..+...-...+.+.+++++|+++|+.+.+++.+ +. ...+.+-+.. ...+...
T Consensus 92 lnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~---d~~~r~nl~a--~~a~l~~ 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQ---DEERRANLLA--VAAALQV 161 (652)
T ss_pred cccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hH---HHHHHHHHHH--HHHhhhH
Confidence 889999999988332 233445666667888999999999999999887543 22 1111111100 0011111
Q ss_pred HHHHHHCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhCC--------CC-----CCHh-hHHHHHHHHHHcCC
Q 003872 364 FEKMVQDGVRTSCWTHNIL---IDGLFRNGRAEAAYTLFCDLKKKG--------KF-----VDGI-TFSIVVLQLCREGQ 426 (790)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~~~~~~--------~~-----~~~~-~~~~ll~~~~~~g~ 426 (790)
..+......| ..+|..+ .-.+...|++..|+++++...+.+ .. -... .-..|...+...|+
T Consensus 162 -~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 162 -QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred -HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 0122222223 2344443 344567899999999998873221 10 0011 12234445667899
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHH---HHHHhcCCchH--HHHHHHHHHhCCC----------ccchHhHHHHHHHH
Q 003872 427 IEEALRLVEEMEGRGFVVDLVTISSLL---IGFHKYGRWDF--TERLMKHIRDGNL----------VLDVLKWKADVEAT 491 (790)
Q Consensus 427 ~~~a~~~~~~m~~~~~~~~~~~~~~l~---~~~~~~g~~~~--a~~~~~~~~~~~~----------~~~~~~~~~~i~~~ 491 (790)
.++|..++...++.... |........ .++....++-. +...++....... ....+..|..+-.+
T Consensus 240 t~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887543 432222221 12222222111 1122221111000 00000011111111
Q ss_pred hhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchh
Q 003872 492 MKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQ 571 (790)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 571 (790)
+.+..+
T Consensus 319 ~tnk~~-------------------------------------------------------------------------- 324 (652)
T KOG2376|consen 319 FTNKMD-------------------------------------------------------------------------- 324 (652)
T ss_pred HhhhHH--------------------------------------------------------------------------
Confidence 110000
Q ss_pred hHhHHHhHhHhcCCCCcchHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 003872 572 LFSLARGLRVQGKGMGTFDIDMVNTFLSIFLA--KGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVL 649 (790)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 649 (790)
+-......-+.......+..++....+ ...+..+.+++....+....-+..+.-.++......|+++.|.+++
T Consensus 325 -----q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 325 -----QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred -----HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 000111111112223334444444332 2356778888877766543333455666777788999999999999
Q ss_pred H--------HHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHH
Q 003872 650 N--------EMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGG-GYLD----VVMYNTLINVLGKAGRFDEA 716 (790)
Q Consensus 650 ~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~p~----~~~~~~li~~~~~~g~~~~A 716 (790)
. ...+.+..| .+..++...|.+.++-+.|..++.+.+..-. ..+. ..++.-....-.+.|+.++|
T Consensus 400 ~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 9 555555544 4556677778888887777777776654310 1122 22333344455678999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003872 717 NMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMM 758 (790)
Q Consensus 717 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 758 (790)
..+++++.+. ..+|..+...++.+|++. +.+.|..+-..+
T Consensus 478 ~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 478 SSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999985 366888899999999886 467787776655
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2e-05 Score=76.04 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=97.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH-HHHH-hc
Q 003872 597 FLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI-QGLG-KM 674 (790)
Q Consensus 597 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-~~~~-~~ 674 (790)
-...+...+++++|.-.|+..+... +-+..+|.-|+..|...|.+.+|.-+-++..+. ++.+..+...+. ..|. ..
T Consensus 340 KG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp 417 (564)
T KOG1174|consen 340 KGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDP 417 (564)
T ss_pred ccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCc
Confidence 3345556677777777777666553 446677777777777777777776666555443 233444443332 2222 22
Q ss_pred CCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHH
Q 003872 675 GRADLASTILDKLMKQGGGYLD-VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHY 753 (790)
Q Consensus 675 g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 753 (790)
..-++|.+++++..+. .|+ ....+.+...|...|..+++..++++... ..||..-.+.|.+.+...+.+.+|.+
T Consensus 418 ~~rEKAKkf~ek~L~~---~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKI---NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred hhHHHHHHHHHhhhcc---CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHH
Confidence 2346777777776654 344 33455666667777777777777777665 36677777777777777777777777
Q ss_pred HHHHHHh
Q 003872 754 FLKMMLD 760 (790)
Q Consensus 754 ~~~~m~~ 760 (790)
.|....+
T Consensus 493 ~y~~ALr 499 (564)
T KOG1174|consen 493 YYYKALR 499 (564)
T ss_pred HHHHHHh
Confidence 7777664
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.97 E-value=4.6e-07 Score=93.66 Aligned_cols=250 Identities=17% Similarity=0.101 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHh-----CC-CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCC
Q 003872 119 SETFKLLLEPCIKSGKIDFAIEILDYMEEL-----GT-SLSP-NVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADN 191 (790)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 191 (790)
..++..+...|...|+++.|+.+++...+. |. .|.. ...+.+...|...+++.+|..+|++++.......+..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356777999999999999999999988775 21 2232 2355677889999999999999999877543222111
Q ss_pred cccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCC-CCC
Q 003872 192 SVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGL-VPD 270 (790)
Q Consensus 192 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~ 270 (790)
.+.-..+++.|...|.+.|++++|...++...+ ++++ ..|. .|.
T Consensus 279 ----h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-----------------------------I~~~--~~~~~~~~ 323 (508)
T KOG1840|consen 279 ----HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-----------------------------IYEK--LLGASHPE 323 (508)
T ss_pred ----CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-----------------------------HHHH--hhccChHH
Confidence 122234555666666666666666666555443 1111 0011 111
Q ss_pred H-hHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-
Q 003872 271 L-HTYNSLIQVLCVVGKVKDALIVWEELKGS-----GH--EPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYN----GL- 337 (790)
Q Consensus 271 ~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~- 337 (790)
+ ..++.+...++..+++++|..++....+. |. .--..+++.|...|...|++++|.++++..... +-
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC
Confidence 1 22444555666667777777666654321 10 011346677777777777777777777766532 11
Q ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003872 338 -IP-DTVVYNSLLNGMFKSRKVMEACQLFEKMVQ----DG--VRTSCWTHNILIDGLFRNGRAEAAYTLFCDLK 403 (790)
Q Consensus 338 -~p-~~~~~~~li~~~~~~~~~~~a~~l~~~~~~----~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 403 (790)
.+ ....++.+...|.+.+...+|.++|.+... .| .+-...+|..|...|...|+++.|+++.+...
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 123455566666666666666666665432 11 11223456666666666666666666655544
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=2.6e-07 Score=81.86 Aligned_cols=188 Identities=15% Similarity=0.045 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGL 671 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 671 (790)
.+...+...|...|+...|..-+++.++.. +.+..+|..+...|-+.|+.+.|.+.|++..+.. +.+-.+.|....-+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 455678899999999999999999999886 5677889999999999999999999999999874 33667888888889
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccCCHHH
Q 003872 672 GKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAGRLKE 750 (790)
Q Consensus 672 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 750 (790)
|..|.+++|...|++++......--..+|..+.-+..+.|+.+.|...|++..+. .| ...+...+.......|++-.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchH
Confidence 9999999999999999987633334568888888888999999999999999985 33 35667789999999999999
Q ss_pred HHHHHHHHHhCCCCCCccchhHHHHHHHHHHhhh
Q 003872 751 AHYFLKMMLDSGCTPNHVTDTTLDFLGREIDRLK 784 (790)
Q Consensus 751 A~~~~~~m~~~~~~p~~~t~~~l~~l~~~~~~~~ 784 (790)
|..+++.....+. ++..+.-+...+.+.+++.-
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHH
Confidence 9999999987654 66655444455555555543
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.94 E-value=1.8e-05 Score=81.66 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKK 168 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 168 (790)
..++++...|+-+.|-++-+ ..| + -.+.|+.|.+.|.+..|.+.-..=.. +..|......+..++.+..
T Consensus 594 sy~q~l~dt~qd~ka~elk~---sdg-----d-~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~e 662 (1636)
T KOG3616|consen 594 SYLQALMDTGQDEKAAELKE---SDG-----D-GLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGE 662 (1636)
T ss_pred HHHHHHHhcCchhhhhhhcc---ccC-----c-cHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhH
Confidence 44556666677666655431 111 1 13467888888888887765533222 2245666666666666666
Q ss_pred ChhHHHHHHHHH
Q 003872 169 QLGLAMSILFKL 180 (790)
Q Consensus 169 ~~~~a~~~~~~~ 180 (790)
-+++|-.+|+++
T Consensus 663 lydkagdlfeki 674 (1636)
T KOG3616|consen 663 LYDKAGDLFEKI 674 (1636)
T ss_pred HHHhhhhHHHHh
Confidence 666666666655
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.93 E-value=7.2e-07 Score=88.56 Aligned_cols=174 Identities=16% Similarity=0.114 Sum_probs=113.7
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.++.+|+.+...+...|++++|...|+...+.. +-+...|..+...+...|++++|+..++...+.. |+.......
T Consensus 95 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~ 171 (296)
T PRK11189 95 PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALW 171 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 3456778888888888888888888888888764 3456677777788888899999999998888753 332222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C--CCC-ChHHHHHHHHH
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS---G--INP-DVVTFNTLIEV 741 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~p-~~~~~~~l~~~ 741 (790)
...+...++.++|...+++.... ..|+...| .+ .....|+..++ +.+..+.+. . +.| ....|..+...
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~ 245 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEK--LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKY 245 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhh--CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 22344567889999988776544 23443322 22 23334555444 344444431 1 111 23578888899
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCccchh
Q 003872 742 NGKAGRLKEAHYFLKMMLDSGCTPNHVTDT 771 (790)
Q Consensus 742 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 771 (790)
+...|++++|+..|++..+.+ +||.+-+.
T Consensus 246 ~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~ 274 (296)
T PRK11189 246 YLSLGDLDEAAALFKLALANN-VYNFVEHR 274 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CchHHHHH
Confidence 999999999999999988653 34554443
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=1e-05 Score=74.37 Aligned_cols=194 Identities=16% Similarity=0.124 Sum_probs=134.8
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHH-HHHHHH
Q 003872 86 TYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYD-SVLVSL 164 (790)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~ 164 (790)
.+.+.+..+.+..++.+|++++....++..+ +......+...|-+..++..|-+.|+++-... |...-|. .-.+.+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 3666777788889999999999998887633 67778888888889999999999999987753 3333332 234566
Q ss_pred HhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHH----HHHHhccchHHHHHHHHHHHhcCCCCCchhhHH
Q 003872 165 VRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELL----VALRKSDRRSEFKQVFERLKEQKEFEFDIYGYN 240 (790)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (790)
-+.+.+..|+.+...+.+. + ...+..+ ......+++..+..+.++.... -+..+.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~--------------~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~i 148 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN--------------P--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQI 148 (459)
T ss_pred HHhcccHHHHHHHHHhcCC--------------H--HHHHHHHHHHHHHhcccccCcchHHHHHhccCC----Cccchhc
Confidence 7788888999888877442 1 1111111 1123456777777777776531 1445555
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003872 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHE 303 (790)
Q Consensus 241 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 303 (790)
.......+.|+.+.|.+-|+...+.+--.....|+..+ ++.+.|+.+.|++...++.++|+.
T Consensus 149 n~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 149 NLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred cchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 55556678899999999998888765444566777655 444678888999988888877753
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.87 E-value=4.3e-06 Score=83.03 Aligned_cols=221 Identities=11% Similarity=0.009 Sum_probs=153.7
Q ss_pred cchHHHHHHHHHHHhcCCCCCc--hhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 003872 214 DRRSEFKQVFERLKEQKEFEFD--IYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDAL 291 (790)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 291 (790)
+..+.++.-+.++.......|+ ...|..+...|...|+.++|...|++..+.... +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 4556677777777754334333 356778888899999999999999999887533 6788999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003872 292 IVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDG 371 (790)
Q Consensus 292 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~ 371 (790)
..|+...+.. +-+..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|...|.......
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999998763 3456778888888889999999999999988753 443322222223445678999999997765432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCC--C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCc
Q 003872 372 VRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK---GKF--V-DGITFSIVVLQLCREGQIEEALRLVEEMEGRGFV 443 (790)
Q Consensus 372 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 443 (790)
.++...+ .+.. ...|+...+ ..+..+.+. .+. | ....|..+...+.+.|++++|...|++..+.++.
T Consensus 196 -~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 196 -DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred -CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 2333222 2222 234554443 244444322 111 1 2356888888899999999999999999877543
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.86 E-value=2.8e-05 Score=83.40 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=80.2
Q ss_pred HHcCChHHHHHHHHHHHhC---------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCCHHHHHHHHH--
Q 003872 602 LAKGKLNLACKLFEIFTDM---------GVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK-FCPTDIATYNVVIQ-- 669 (790)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~---------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~-- 669 (790)
..+|+.++-....+.+... |.+.+...|.+......+.+.+.+|..+..+.+.. ..+-|...||.+..
T Consensus 934 ~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~ 1013 (1238)
T KOG1127|consen 934 LQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDA 1013 (1238)
T ss_pred HhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 4455555554444444221 34455566666666666777777776666654321 12345666665332
Q ss_pred --HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCC-hHHHHHHHHHHhcc
Q 003872 670 --GLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT-SGINPD-VVTFNTLIEVNGKA 745 (790)
Q Consensus 670 --~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~-~~~~~~l~~~~~~~ 745 (790)
.++..|.++.|...+...... .+..+--+-+.. ...|+++++.+.|+++.. ..-.-+ .+....++.+....
T Consensus 1014 gRL~lslgefe~A~~a~~~~~~e----vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~ 1088 (1238)
T KOG1127|consen 1014 GRLELSLGEFESAKKASWKEWME----VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLA 1088 (1238)
T ss_pred hhhhhhhcchhhHhhhhcccchh----HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhc
Confidence 233444555444333322111 122222111222 335788888888888876 222222 23445555666667
Q ss_pred CCHHHHHHHHHHHHhC
Q 003872 746 GRLKEAHYFLKMMLDS 761 (790)
Q Consensus 746 g~~~~A~~~~~~m~~~ 761 (790)
+.-+.|...+=+....
T Consensus 1089 ~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1089 RQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred ccchHHHHHHHHHHHh
Confidence 7777777776666543
No 91
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=0.00013 Score=70.50 Aligned_cols=80 Identities=14% Similarity=-0.025 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 608 NLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKL 687 (790)
Q Consensus 608 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 687 (790)
++|.++++.-.... +.-....+.+...+...|..+.++.++++.... -||....+.|.+.+.....+++|.+.|..+
T Consensus 421 EKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 421 EKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34445554444332 111223344444555566666666666655543 356666666666666666666666666665
Q ss_pred HHh
Q 003872 688 MKQ 690 (790)
Q Consensus 688 ~~~ 690 (790)
...
T Consensus 498 Lr~ 500 (564)
T KOG1174|consen 498 LRQ 500 (564)
T ss_pred Hhc
Confidence 553
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=0.00032 Score=73.83 Aligned_cols=342 Identities=14% Similarity=0.115 Sum_probs=198.6
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhC-CC-------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQED-DV-------VVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLS 153 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~-~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 153 (790)
.+-..|..+.+.+.+.++++-|.-.+-.|... |. .-+..+=..+.-.....|..++|+.+|++-.+.
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 35578999999999999999888777666542 11 101122222333345779999999999988763
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhc----
Q 003872 154 PNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQ---- 229 (790)
Q Consensus 154 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 229 (790)
..|=+.|-..|.+++|.++-+.--+ ..-..+|......+...++.+.|++.|++....
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DR--------------iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev 891 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDR--------------IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEV 891 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhccc--------------eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHH
Confidence 3444566778999999887654211 122346666777777778888887777653210
Q ss_pred ----CCCC----------CchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 230 ----KEFE----------FDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWE 295 (790)
Q Consensus 230 ----~~~~----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 295 (790)
...+ .|...|.-.....-..|+.+.|+.+|....+ |-++....|-.|+.++|-++-+
T Consensus 892 ~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~ 962 (1416)
T KOG3617|consen 892 FRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAE 962 (1416)
T ss_pred HHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHH
Confidence 0011 1333445555555567788888877776653 4556777788899999988876
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 296 ELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQY----------NGLIPDTVVYNSLLNGMFKSRKVMEACQLFE 365 (790)
Q Consensus 296 ~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~ 365 (790)
+- -|....-.+.+.|-..|++.+|..+|.+... +++ +...+|..+ .....+.-.|-+.|+
T Consensus 963 es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nlal--~s~~~d~v~aArYyE 1032 (1416)
T KOG3617|consen 963 ES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLAL--MSGGSDLVSAARYYE 1032 (1416)
T ss_pred hc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHh--hcCchhHHHHHHHHH
Confidence 63 3556666788899999999999998876542 111 111121111 111222333444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------HHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003872 366 KMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCD--------LKKK--GKFVDGITFSIVVLQLCREGQIEEALRLVE 435 (790)
Q Consensus 366 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (790)
+.-. -+.-.+..|.+.|.+.+|+++--+ +... ....|+...+.-...++...++++|..++-
T Consensus 1033 e~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~ 1104 (1416)
T KOG3617|consen 1033 ELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLC 1104 (1416)
T ss_pred Hcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3221 122334556677777766654321 1111 222344445555555555555665555543
Q ss_pred HHHh----------CC----------------CccC----HHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 003872 436 EMEG----------RG----------------FVVD----LVTISSLLIGFHKYGRWDFTERLMKHIR 473 (790)
Q Consensus 436 ~m~~----------~~----------------~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (790)
...+ +| -.|+ ...+..+...|.+.|.+..|.+-|.+.-
T Consensus 1105 ~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1105 LAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 3221 11 1122 2345566677788888877776665543
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.80 E-value=3.7e-05 Score=79.67 Aligned_cols=95 Identities=11% Similarity=0.064 Sum_probs=51.6
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHH
Q 003872 238 GYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGH-EPNE--FTHRIIIQ 314 (790)
Q Consensus 238 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~--~~~~~li~ 314 (790)
....+...+...|++++|.+.+++..+.... +...+..+..++...|++++|...+++...... .++. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3334445555666666666666666655322 344555555666666666666666666554321 1121 22334555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 003872 315 GCCKSYRMDDAMKIFSEMQ 333 (790)
Q Consensus 315 ~~~~~~~~~~a~~~~~~m~ 333 (790)
.+...|++++|..++++..
T Consensus 195 ~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 195 FYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHCCCHHHHHHHHHHHh
Confidence 5666666666666666654
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.78 E-value=7.9e-05 Score=80.09 Aligned_cols=183 Identities=12% Similarity=0.016 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhcc
Q 003872 135 IDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSD 214 (790)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 214 (790)
...|...|-+..+.... -...|..|...|+...+...|...|+...+. ...+...+..+...|++..
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL------------Datdaeaaaa~adtyae~~ 540 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL------------DATDAEAAAASADTYAEES 540 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------CchhhhhHHHHHHHhhccc
Confidence 45555555444443211 2235777777777777777777777777665 3445666777777788888
Q ss_pred chHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 003872 215 RRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVW 294 (790)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 294 (790)
+++.|..+.-..-++.....-...|....-.|...++...|..-|+......+. |...|..++.+|...|++..|.++|
T Consensus 541 ~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF 619 (1238)
T KOG1127|consen 541 TWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVF 619 (1238)
T ss_pred cHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhh
Confidence 888777773333221111111223333445566777777777777777765433 6677777788888888888888888
Q ss_pred HHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 295 EELKGSGHEPNE-FTHRIIIQGCCKSYRMDDAMKIFSEMQ 333 (790)
Q Consensus 295 ~~~~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 333 (790)
.+.... .|+. ..---..-.-+..|.+.+|+..+....
T Consensus 620 ~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 620 TKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 776654 3332 111122223456677777777776654
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.77 E-value=4.1e-05 Score=79.32 Aligned_cols=261 Identities=11% Similarity=0.035 Sum_probs=157.3
Q ss_pred HHHhccchHHHHHHHHHHHhcCCCCCchhhHHH---HHHHHhccCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhc
Q 003872 209 ALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNI---CIHAFGCWGDLHTSLRLFKEMKEKGLVPD-LHTYNSLIQVLCVV 284 (790)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 284 (790)
.+...|++++|.+.++...+. .|.+...+.. ........+..+.+.+.+... .+..|+ ......+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHc
Confidence 345566777777777776652 2223333332 111112234555555555441 122333 34445566788899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHH
Q 003872 285 GKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGL-IPDT--VVYNSLLNGMFKSRKVMEAC 361 (790)
Q Consensus 285 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~~~~~~a~ 361 (790)
|++++|...+++..+.. +.+...+..+...+...|++++|...+++...... .|+. ..|..+...+...|+.++|.
T Consensus 128 G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 128 GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999998875 55567788888999999999999999999876532 1232 34557888899999999999
Q ss_pred HHHHHHHHCCC-CCCHHHH-H--HHHHHHHHcCCHHHHHHH--HHHHHhCCC--CCCHhhHHHHHHHHHHcCCHHHHHHH
Q 003872 362 QLFEKMVQDGV-RTSCWTH-N--ILIDGLFRNGRAEAAYTL--FCDLKKKGK--FVDGITFSIVVLQLCREGQIEEALRL 433 (790)
Q Consensus 362 ~l~~~~~~~~~-~~~~~~~-~--~li~~~~~~~~~~~a~~~--~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~ 433 (790)
.++++...... .+..... + .++.-+...|....+.++ +........ ............++...|+.+.|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 99999864322 1112111 1 223333334433333222 211111111 11112223566677889999999999
Q ss_pred HHHHHhCCCc---cC---HHHHHHHH--HHHHhcCCchHHHHHHHHHHh
Q 003872 434 VEEMEGRGFV---VD---LVTISSLL--IGFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 434 ~~~m~~~~~~---~~---~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~ 474 (790)
++.+...... -. ..+-..++ -++...|+++.|.+.+.....
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9998764222 01 11222233 345688999999999998776
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=3.2e-05 Score=71.23 Aligned_cols=320 Identities=15% Similarity=0.091 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCC
Q 003872 120 ETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPG 199 (790)
Q Consensus 120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (790)
--|.+++..+.+-.++++|++++....++.. .+...++.|..+|-...++..|-..++++-.. .|.
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-------------~P~ 76 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-------------HPE 76 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------ChH
Confidence 3467778888888999999999988877652 36667888888999999999999999988653 343
Q ss_pred cchHHH-HHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHH--HHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 200 CVACNE-LLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIH--AFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 200 ~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
..-|.. -...+.+.+.+.+|..+...|... |+...-..-+. ...+.+|+..+..++++....| +..+.+.
T Consensus 77 ~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in 149 (459)
T KOG4340|consen 77 LEQYRLYQAQSLYKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQIN 149 (459)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhcc
Confidence 333332 345567788889999988888752 22211111111 2235688888888888876432 4444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcC
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGM-FKSR 355 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~~ 355 (790)
......+.|+++.|.+-|+...+-+--.....|+..+..| +.++.+.|++...++.++|++-.+. ++.=+..- ...+
T Consensus 150 ~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDvr 227 (459)
T KOG4340|consen 150 LGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDVR 227 (459)
T ss_pred chheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCchh
Confidence 5555667899999999999887764344566777655544 5688899999999998888652221 11000000 0000
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 003872 356 KVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK-GKFVDGITFSIVVLQLCREGQIEEALRLV 434 (790)
Q Consensus 356 ~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 434 (790)
.+..-..+- ..+ -+..+|.-...+.+.++++.|.+.+-+|.-+ ....|++|...+.-.- ..+++-...+-+
T Consensus 228 svgNt~~lh----~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KL 299 (459)
T KOG4340|consen 228 SVGNTLVLH----QSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKL 299 (459)
T ss_pred cccchHHHH----HHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHH
Confidence 000000000 000 1223444444566778888888877777544 2345666665543321 234455555555
Q ss_pred HHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 003872 435 EEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKH 471 (790)
Q Consensus 435 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 471 (790)
.-+.+.+. .-..||..++-.|++..-++.|..++.+
T Consensus 300 qFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 300 QFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 55555433 3456777788888888777777776654
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=0.00011 Score=73.81 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=79.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCc-hhhHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFD-IYGYN 240 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 240 (790)
.+.+..|+++.|...|-+.+.. .++|-+.|..-..+|+..|++++|.+=-.+-.+ +.|+ ...|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~ 74 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIML------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYS 74 (539)
T ss_pred HhhcccccHHHHHHHHHHHHcc------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHH
Confidence 3456778899999888888775 566778888888899999999988765555443 5566 46788
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003872 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVL 281 (790)
Q Consensus 241 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 281 (790)
-...++.-.|++++|+.-|.+-.+.... +...++-+..++
T Consensus 75 r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 75 RKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAY 114 (539)
T ss_pred HhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhh
Confidence 8888888889999999999988876322 455566666665
No 98
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.73 E-value=0.00044 Score=69.61 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003872 607 LNLACKLFEIFTDMG-VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT-DIATYNVVIQGLGKMGRADLASTIL 684 (790)
Q Consensus 607 ~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 684 (790)
.+....+++++...- ..|+ -+|..+|+...+..-+..|..+|.++.+.+..+ ++.+.++++.-||. +|...|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 334444455444332 2333 567778888888888888889998888877666 77788888887665 7888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 685 DKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD--VVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 685 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
+--++.. .-+..--...++-+...++-..|+.+|++....++.|+ ..+|..++.-=..-|++..++++-+++...
T Consensus 425 eLGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8777763 34455556777778888888888889988888766665 578888888888888888888888887643
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.70 E-value=1.6e-06 Score=84.51 Aligned_cols=170 Identities=20% Similarity=0.142 Sum_probs=106.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH----Hh
Q 003872 598 LSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGL----GK 673 (790)
Q Consensus 598 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~----~~ 673 (790)
...+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..|... .-+..++ .-
T Consensus 109 A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l-~qLa~awv~l~~g 179 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSIL-TQLAEAWVNLATG 179 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHH-HHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHH-HHHHHHHHHHHhC
Confidence 34455667788777766432 34555666777788888888888888888775 334332 2233333 22
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCH-HHHH
Q 003872 674 MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL-KEAH 752 (790)
Q Consensus 674 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~ 752 (790)
...+++|..+|+++.++ ..++..+.|.+..++...|++++|.+++.+....+ +-+..+...++-+....|+. +.+.
T Consensus 180 ~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp TTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred chhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHH
Confidence 33578888888887665 45777888888888888888888888888876543 22466666777777777776 6677
Q ss_pred HHHHHHHhCCCCCCccchhHHHHHHHHHH
Q 003872 753 YFLKMMLDSGCTPNHVTDTTLDFLGREID 781 (790)
Q Consensus 753 ~~~~~m~~~~~~p~~~t~~~l~~l~~~~~ 781 (790)
+++.++... .|++.-..-+...-..+|
T Consensus 257 ~~l~qL~~~--~p~h~~~~~~~~~~~~FD 283 (290)
T PF04733_consen 257 RYLSQLKQS--NPNHPLVKDLAEKEAEFD 283 (290)
T ss_dssp HHHHHCHHH--TTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCChHHHHHHHHHHHHH
Confidence 788887754 565544333333333333
No 100
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.69 E-value=0.00055 Score=68.88 Aligned_cols=85 Identities=8% Similarity=0.026 Sum_probs=51.4
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 003872 605 GKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD--IATYNVVIQGLGKMGRADLAST 682 (790)
Q Consensus 605 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~ 682 (790)
++..-|.++|+.-.+.- .-++.--...++.+...++-..|..+|++....+..|| ..+|..++.--..-|++..+.+
T Consensus 415 kD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~ 493 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK 493 (656)
T ss_pred CChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 44555666666544331 23333445566666667777777777777766644444 3467777776667777777777
Q ss_pred HHHHHHHh
Q 003872 683 ILDKLMKQ 690 (790)
Q Consensus 683 ~~~~~~~~ 690 (790)
+-+++...
T Consensus 494 lekR~~~a 501 (656)
T KOG1914|consen 494 LEKRRFTA 501 (656)
T ss_pred HHHHHHHh
Confidence 76666554
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.67 E-value=0.00015 Score=85.70 Aligned_cols=343 Identities=12% Similarity=0.024 Sum_probs=201.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCC--HHHHHHHHHHHH
Q 003872 316 CCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDG--V----RTS--CWTHNILIDGLF 387 (790)
Q Consensus 316 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~--~----~~~--~~~~~~li~~~~ 387 (790)
....|+++.+...+..+.......+..........+...|+++++...+......- . .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 34456666666666554211111122222333444556788888888887765421 0 111 111222334455
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-ccCHHHHHHHHHHHHh
Q 003872 388 RNGRAEAAYTLFCDLKKKGKFVDG----ITFSIVVLQLCREGQIEEALRLVEEMEGR----GF-VVDLVTISSLLIGFHK 458 (790)
Q Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~ 458 (790)
..|+++.|...+++........+. ...+.+...+...|+++.|...+++.... |. ......+..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 788899998888887653111121 23444555667788999988888877643 11 1112344555667788
Q ss_pred cCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCc
Q 003872 459 YGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAK 538 (790)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (790)
.|+++.|...+++..+..-.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~------------------------------------------------------------ 563 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEE------------------------------------------------------------ 563 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHH------------------------------------------------------------
Confidence 89999998888776541000
Q ss_pred ccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003872 539 DEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFT 618 (790)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 618 (790)
. ...........+..+...+...|++++|...+....
T Consensus 564 ------------------------------------------~-~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 564 ------------------------------------------Q-HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred ------------------------------------------h-ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 0 000000112233445666777899999998888765
Q ss_pred hCC--CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 619 DMG--VHP--VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT-DIATY-----NVVIQGLGKMGRADLASTILDKLM 688 (790)
Q Consensus 619 ~~g--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~ 688 (790)
... ..+ ....+..+...+...|++++|...+.++....... ....+ ...+..+...|+.+.|..++....
T Consensus 601 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 680 (903)
T PRK04841 601 EVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAP 680 (903)
T ss_pred HhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcC
Confidence 431 112 23344456667788999999999988875431111 11111 112244556789999999987654
Q ss_pred HhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 689 KQGGGYLD---VVMYNTLINVLGKAGRFDEANMLFEQMRTS----GINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 689 ~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
... .... ...+..+..++...|++++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+.+..+
T Consensus 681 ~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 681 KPE-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred CCC-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 321 1111 111345667788899999999999988752 33332 34566777889999999999999999886
Q ss_pred CC
Q 003872 761 SG 762 (790)
Q Consensus 761 ~~ 762 (790)
..
T Consensus 760 la 761 (903)
T PRK04841 760 LA 761 (903)
T ss_pred Hh
Confidence 53
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.61 E-value=0.0003 Score=83.09 Aligned_cols=341 Identities=12% Similarity=0.004 Sum_probs=208.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCCHH--HHHHHHHHH
Q 003872 280 VLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGL------IPDTV--VYNSLLNGM 351 (790)
Q Consensus 280 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------~p~~~--~~~~li~~~ 351 (790)
.....|+++.+...++.+.......+..........+...++++++...+......-- .+... ....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777766552211111222223344455678999999999987754210 11111 122233445
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHH
Q 003872 352 FKSRKVMEACQLFEKMVQDGVRTSC----WTHNILIDGLFRNGRAEAAYTLFCDLKKK----GKF-VDGITFSIVVLQLC 422 (790)
Q Consensus 352 ~~~~~~~~a~~l~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~ 422 (790)
...|++++|...++.....-...+. ...+.+...+...|+++.|...+++.... |.. ....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999987763111121 23455666777899999999999887653 111 11234455666778
Q ss_pred HcCCHHHHHHHHHHHHhC----CCc--c-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhcc
Q 003872 423 REGQIEEALRLVEEMEGR----GFV--V-DLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSR 495 (790)
Q Consensus 423 ~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 495 (790)
..|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.....-..
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~---------------- 606 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY---------------- 606 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc----------------
Confidence 899999999998887543 221 1 22334455566777899999999988765520000
Q ss_pred ccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhH
Q 003872 496 KSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSL 575 (790)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 575 (790)
T Consensus 607 -------------------------------------------------------------------------------- 606 (903)
T PRK04841 607 -------------------------------------------------------------------------------- 606 (903)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-ChhhH-----HHHHHHHHhcCCHHHHHHHH
Q 003872 576 ARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHP-VNYTY-----NSMMSSFVKKGYFNQAWGVL 649 (790)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~ 649 (790)
+ .......+..+...+...|+.++|...++......... ....+ ...+..+...|+.+.|...+
T Consensus 607 ---------~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l 676 (903)
T PRK04841 607 ---------Q-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWL 676 (903)
T ss_pred ---------C-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHH
Confidence 0 00112334456677788899999999888775421111 11111 11224455688999999988
Q ss_pred HHHhhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003872 650 NEMGEKFCPTDI---ATYNVVIQGLGKMGRADLASTILDKLMKQG---GGYLD-VVMYNTLINVLGKAGRFDEANMLFEQ 722 (790)
Q Consensus 650 ~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 722 (790)
............ ..+..+..++...|+.++|...++++.... +..++ ..+...+..++...|+.++|...+.+
T Consensus 677 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 677 RQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 776543211111 123456677888999999999999887642 12222 23566667778899999999999999
Q ss_pred HHhc
Q 003872 723 MRTS 726 (790)
Q Consensus 723 m~~~ 726 (790)
..+.
T Consensus 757 Al~l 760 (903)
T PRK04841 757 ALKL 760 (903)
T ss_pred HHHH
Confidence 9874
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=1.6e-05 Score=80.41 Aligned_cols=232 Identities=15% Similarity=0.074 Sum_probs=160.7
Q ss_pred HHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChh
Q 003872 92 RTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLG 171 (790)
Q Consensus 92 ~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 171 (790)
..+.+.|++.+|.-+|+.....++. +..+|..|.......++-..|+..+++..+... .+..+...|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHH
Confidence 4467889999999999999988743 889999999999999999999999999999763 47788999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCC
Q 003872 172 LAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGD 251 (790)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 251 (790)
.|...|+..+........... ..++...-+. ..+..........++|-.+....+..+|...+..|.-.|.-.|+
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~---a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVS---AGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCccchhccc---cCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999998775422110000 0000000000 11111222334455555555445555667777777777777788
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 252 LHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPN-EFTHRIIIQGCCKSYRMDDAMKIFS 330 (790)
Q Consensus 252 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~ 330 (790)
+++|...|+..+...+. |...||.|...++...+.++|+..|.+.++. .|. +.+...|.-+|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 88888888887776433 5677888887777777788888888887765 454 2344445556777777777777775
Q ss_pred HHH
Q 003872 331 EMQ 333 (790)
Q Consensus 331 ~m~ 333 (790)
...
T Consensus 523 ~AL 525 (579)
T KOG1125|consen 523 EAL 525 (579)
T ss_pred HHH
Confidence 543
No 104
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=6e-08 Score=59.18 Aligned_cols=31 Identities=58% Similarity=0.701 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 693 GYLDVVMYNTLINVLGKAGRFDEANMLFEQM 723 (790)
Q Consensus 693 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 723 (790)
+.||..||++||.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4455555555555555555555555555444
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.57 E-value=0.00059 Score=64.51 Aligned_cols=206 Identities=13% Similarity=0.046 Sum_probs=116.3
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003872 245 AFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDD 324 (790)
Q Consensus 245 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 324 (790)
.+.-.|+...|+.+...+.+.. +.|...|..-..+|...|++..|..-++...+.. ..+..++--+-..+...|+.+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHH
Confidence 3444566666776666666652 2355666666666666777666666666555443 2334444445555666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003872 325 AMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKK 404 (790)
Q Consensus 325 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 404 (790)
++...++..+. .||...+-..-. .+.+..+.++.|. .....++|.++++-.+...+
T Consensus 242 sL~~iRECLKl--dpdHK~Cf~~YK------klkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 242 SLKEIRECLKL--DPDHKLCFPFYK------KLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLK 297 (504)
T ss_pred HHHHHHHHHcc--CcchhhHHHHHH------HHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHh
Confidence 66666666553 344432211111 1111122222221 22344566666776666666
Q ss_pred CCCCCCHhh---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 003872 405 KGKFVDGIT---FSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNL 477 (790)
Q Consensus 405 ~~~~~~~~~---~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (790)
......... +..+-.++...|++.+|++...+++... +.|+.++..-..+|.-...+|.|..-|+...+.+-
T Consensus 298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 643322222 3334445556778888888888877542 22467777777788777888888888887777543
No 106
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=8.9e-08 Score=58.42 Aligned_cols=33 Identities=52% Similarity=0.731 Sum_probs=16.1
Q ss_pred cCCCCChHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003872 726 SGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMM 758 (790)
Q Consensus 726 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 758 (790)
.|+.||..||++||++|++.|++++|.+++++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 034455555555555555555555555555544
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.54 E-value=5.9e-05 Score=83.87 Aligned_cols=222 Identities=14% Similarity=0.098 Sum_probs=170.1
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcc-----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhH
Q 003872 410 DGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVV-----DLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKW 484 (790)
Q Consensus 410 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 484 (790)
....|-..|....+.++.++|.++.++++.. +.+ -...|.++++.-..-|.-+...++|+++.+-
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--------- 1526 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--------- 1526 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---------
Confidence 4456777888888899999999999998865 322 2346677777666777777778888877651
Q ss_pred HHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhh
Q 003872 485 KADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVK 564 (790)
Q Consensus 485 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (790)
T Consensus 1527 -------------------------------------------------------------------------------- 1526 (1710)
T KOG1070|consen 1527 -------------------------------------------------------------------------------- 1526 (1710)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 003872 565 SDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQ 644 (790)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 644 (790)
.....+|..|...|.+.+..++|.++++.|.+.- .-....|..++..+.+..+-++
T Consensus 1527 -----------------------cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~a 1582 (1710)
T KOG1070|consen 1527 -----------------------CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEA 1582 (1710)
T ss_pred -----------------------cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHH
Confidence 1123467789999999999999999999998763 3577899999999999999999
Q ss_pred HHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 645 AWGVLNEMGEKFCPT-DIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQM 723 (790)
Q Consensus 645 A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 723 (790)
|..++.++++.-.+- ......-.+..-.+.|+.+++..+|+..+... +.-...|+.+|+.-.+.|+.+.++.+|++.
T Consensus 1583 a~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1583 ARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred HHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999998862221 23344455566678899999999999998874 445667999999999999999999999999
Q ss_pred HhcCCCCC--hHHHHHHHHHHhccCC
Q 003872 724 RTSGINPD--VVTFNTLIEVNGKAGR 747 (790)
Q Consensus 724 ~~~g~~p~--~~~~~~l~~~~~~~g~ 747 (790)
...++.|- ...|.-++.-=-..|+
T Consensus 1661 i~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1661 IELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 99888776 3455555554444455
No 108
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.54 E-value=0.00047 Score=65.18 Aligned_cols=211 Identities=14% Similarity=0.048 Sum_probs=137.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHhc
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPN-VYDSVLVSLVRK 167 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~ 167 (790)
.+-..+..+|++.+|+.-|....+.++ -+-.++-.-...|...|+-..|+.-+.+..+.. ||-. .-..-...+.+.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHHhchhhhhc
Confidence 455666677777777777776666542 233444455566777777777777777776643 4432 122333456677
Q ss_pred CChhHHHHHHHHHHHHhccCCCCCcc-cccCCCcc--hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q 003872 168 KQLGLAMSILFKLLEACNDNTADNSV-VESLPGCV--ACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIH 244 (790)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 244 (790)
|.++.|..-|+.++.....+...... ....+... ..-..+..+...|+...|++....+.+- .+.|...|..-..
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQARAK 197 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHH
Confidence 77777777777777643211100000 00000011 1122344556688999999999999863 4568888999999
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003872 245 AFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEF 307 (790)
Q Consensus 245 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 307 (790)
+|...|++..|+.=++...+..-. ++.++--+-..+...|+.+.++...++..+. .||-.
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK 257 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHK 257 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccchh
Confidence 999999999999877777655323 5666666778888999999999999999876 56543
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.53 E-value=3.7e-06 Score=82.04 Aligned_cols=148 Identities=21% Similarity=0.141 Sum_probs=67.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCC
Q 003872 281 LCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMF----KSRK 356 (790)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~~~ 356 (790)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. ..+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchh
Confidence 33345555555444321 23344444555555555555555555555543 1222 2222222222 1224
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH-HHHHHHHH
Q 003872 357 VMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQI-EEALRLVE 435 (790)
Q Consensus 357 ~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~ 435 (790)
+.+|..+|+++... ..+++.+.+.+..++...|++++|.+++.+....+.. ++.+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 55555555555443 2345555555555555566666666655555444322 344444444444445544 44555555
Q ss_pred HHHh
Q 003872 436 EMEG 439 (790)
Q Consensus 436 ~m~~ 439 (790)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 5543
No 110
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=0.0001 Score=74.07 Aligned_cols=389 Identities=14% Similarity=0.055 Sum_probs=236.6
Q ss_pred CCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003872 60 SLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAI 139 (790)
Q Consensus 60 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 139 (790)
..+...|+..|--+....| +|...|+--..+++..|+|++|++--....+.. +.-+..|.....++.-.|++++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l~p---~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSP---TNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHccCC---CccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHH
Confidence 4677889999988878777 688899999999999999999988877777764 335778999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH--HHHHhccCCCCCcccccCCCcchHHHHHHHHHhc----
Q 003872 140 EILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFK--LLEACNDNTADNSVVESLPGCVACNELLVALRKS---- 213 (790)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---- 213 (790)
..|.+-++.. +.+...++-+..++... .. +.+.|.. ++..-...+... .......|..++..+-+.
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~~-~~~~~~~p~~~~~l~~~p~t~----~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLED--YA-ADQLFTKPYFHEKLANLPLTN----YSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHH--HH-hhhhccCcHHHHHhhcChhhh----hhhccHHHHHHHHHhhcCcHhh
Confidence 9999988864 23455677777776111 10 0111110 000000000000 000111222222222110
Q ss_pred ---cchHHHHHHHHHHHh--------------cCCCCC----------------------chhhHHHHHHHHhccCChHH
Q 003872 214 ---DRRSEFKQVFERLKE--------------QKEFEF----------------------DIYGYNICIHAFGCWGDLHT 254 (790)
Q Consensus 214 ---~~~~~a~~~~~~~~~--------------~~~~~~----------------------~~~~~~~li~~~~~~g~~~~ 254 (790)
..........-.+.. ..+..| -..-...+..+..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 001111111111000 001111 01124456777777888999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-------HHHHhcCCHHHHHH
Q 003872 255 SLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIII-------QGCCKSYRMDDAMK 327 (790)
Q Consensus 255 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-------~~~~~~~~~~~a~~ 327 (790)
|.+.+....+.. -+..-++....+|...|.+..+....+...+.|. -...-|+.+- .+|.+.++++.+..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 999998888774 3555566777888888888888777777666552 2223333333 35556677888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003872 328 IFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSC-WTHNILIDGLFRNGRAEAAYTLFCDLKKKG 406 (790)
Q Consensus 328 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 406 (790)
.|.+.......|+.. .+....+++....+...-.+ |.. .-...=...+.+.|++..|+..|.+++...
T Consensus 320 ~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 888866544333321 22333444444444433322 221 111222556778899999999999999886
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 003872 407 KFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGN 476 (790)
Q Consensus 407 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 476 (790)
.. |...|..-..+|.+.|.+..|+.=.+..++.. ++....|.-=..++....+++.|.+.|.+.++.+
T Consensus 389 P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 389 PE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred Cc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 43 78889999999999999999998877777762 1123333333445555668888888888888754
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=3e-05 Score=74.72 Aligned_cols=172 Identities=13% Similarity=0.014 Sum_probs=130.3
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH--
Q 003872 587 GTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVN---YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDI-- 661 (790)
Q Consensus 587 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-- 661 (790)
.+..+..+..++..+...|++++|...|+.+.... +.+. ..+..+..++...|++++|...++++.+.......
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 34567788888999999999999999999988763 2222 46677888999999999999999999886432111
Q ss_pred HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHhcCCHHHH
Q 003872 662 ATYNVVIQGLGKM--------GRADLASTILDKLMKQGGGYLDVVMY-----------------NTLINVLGKAGRFDEA 716 (790)
Q Consensus 662 ~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~A 716 (790)
..+..+..++... |+.+.|.+.++.+....+- +...+ ..+...|.+.|++++|
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 185 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN--SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAA 185 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 2344455555544 7899999999999987522 22221 1345667888999999
Q ss_pred HHHHHHHHhcC--CCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 717 NMLFEQMRTSG--INPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 717 ~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
...+++..+.. -+.....+..+..++.+.|++++|..+++.+...
T Consensus 186 ~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 186 INRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999998742 1223578889999999999999999999998754
No 112
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.47 E-value=0.0039 Score=67.09 Aligned_cols=219 Identities=16% Similarity=0.141 Sum_probs=143.2
Q ss_pred chhhhhhhhhhhcCCCCCCcchhhHHHHHHH--HHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003872 63 SSKKLDFFRWCSSLRPIYKHTACTYSHIFRT--VCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIE 140 (790)
Q Consensus 63 ~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 140 (790)
-..|+.-...+.+..|+ ..|..++.+ +.+.|+.++|..+++.....+.. |..|...+-..|.+.++.++|..
T Consensus 25 fkkal~~~~kllkk~Pn-----~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPN-----ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 44566666666555542 223344444 46889999999999888776644 88899999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccc-----
Q 003872 141 ILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDR----- 215 (790)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----- 215 (790)
+|++..... |+......++.+|++.+.+.+-.++--++.+. .+.+...+=.+++.+.+...
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~------------~pk~~yyfWsV~Slilqs~~~~~~~ 164 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN------------FPKRAYYFWSVISLILQSIFSENEL 164 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------CCcccchHHHHHHHHHHhccCCccc
Confidence 999998865 66888899999999999887766655555543 34444555555555543221
Q ss_pred -----hHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHH-HHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 003872 216 -----RSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLF-KEMKEKGLVPDLHTYNSLIQVLCVVGKVKD 289 (790)
Q Consensus 216 -----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 289 (790)
..-|...++.+.+..|---+..-...-...+...|++++|..++ ....+.-..-+...-+.-+..+...+++.+
T Consensus 165 ~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 165 LDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred ccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 12355666666664431111111122223334567788888887 344444333344444566777778888888
Q ss_pred HHHHHHHHHhCC
Q 003872 290 ALIVWEELKGSG 301 (790)
Q Consensus 290 a~~~~~~~~~~g 301 (790)
..++-.++...|
T Consensus 245 l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 245 LFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHhC
Confidence 888888887775
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.41 E-value=0.00023 Score=79.37 Aligned_cols=166 Identities=13% Similarity=0.012 Sum_probs=75.1
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003872 202 ACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVL 281 (790)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 281 (790)
.|-++++.-...|.-+...++|++..+ + .-.-..|..|...|.+.+.+++|.++++.|.+. +......|...+..+
T Consensus 1499 iWiA~lNlEn~yG~eesl~kVFeRAcq-y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1499 IWIAYLNLENAYGTEESLKKVFERACQ-Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFL 1574 (1710)
T ss_pred HHHHHHhHHHhhCcHHHHHHHHHHHHH-h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHH
Confidence 344444444444444444455554443 1 111233444555555555555555555555443 122444455555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPN---EFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVM 358 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 358 (790)
.+.++-+.|..++.+..+. -|. .....-.+..-.+.|+.+.+..+|+....... -....|+..|++-.+.|+.+
T Consensus 1575 l~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~ 1651 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIK 1651 (1710)
T ss_pred hcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHH
Confidence 5555555555555554433 222 11222223333344555555555555444321 13344555555555555555
Q ss_pred HHHHHHHHHHHCCCCC
Q 003872 359 EACQLFEKMVQDGVRT 374 (790)
Q Consensus 359 ~a~~l~~~~~~~~~~~ 374 (790)
.+..+|++....++.|
T Consensus 1652 ~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1652 YVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHHhcCCCh
Confidence 5555555555544433
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=0.00026 Score=73.96 Aligned_cols=120 Identities=12% Similarity=0.073 Sum_probs=94.6
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+....+|-.+..+..+.++++.|.+.|....... +-+...||.+-.+|.+.|+-.+|...+++..+.. .-+..+|...
T Consensus 516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENy 593 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENY 593 (777)
T ss_pred ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeech
Confidence 4456677788888889999999999999988764 5566789999999999999999999999999986 3456667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK 709 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 709 (790)
+....+.|.++.|.+.+.++........|......++....+
T Consensus 594 mlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 594 MLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred hhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 777889999999999999987765334466655555555443
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=0.00017 Score=73.26 Aligned_cols=135 Identities=13% Similarity=0.024 Sum_probs=98.0
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 003872 617 FTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD 696 (790)
Q Consensus 617 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 696 (790)
....+..+|+.+...|.-.|--.|++++|+.-|+.++... +.|..+||-|...++...+.++|++.|.++++ ++|+
T Consensus 421 a~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~ 496 (579)
T KOG1125|consen 421 ARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPG 496 (579)
T ss_pred HHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCC
Confidence 3445545778888888888888899999999999888752 44677889998888888889999999998887 4565
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHHh---c------CCCCChHHHHHHHHHHhccCCHHHHHHHH
Q 003872 697 VV-MYNTLINVLGKAGRFDEANMLFEQMRT---S------GINPDVVTFNTLIEVNGKAGRLKEAHYFL 755 (790)
Q Consensus 697 ~~-~~~~li~~~~~~g~~~~A~~~~~~m~~---~------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 755 (790)
-+ ..-.|.-.|...|.+++|.+.|-+.+. . +..++..+|.+|=.++.-.++.+-+.++.
T Consensus 497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 497 YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 33 333455578888999999888776653 2 12224457777777777777776565543
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.34 E-value=7.1e-05 Score=68.39 Aligned_cols=166 Identities=19% Similarity=0.192 Sum_probs=134.4
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.+..+ ..+-..+...|+-+....+........ +.+....+.++....+.|++..|...+.+.... -++|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHH
Confidence 445555 556677777888888877776654332 456566777889999999999999999999886 56799999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCC
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGR 747 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 747 (790)
.-+|.+.|+.+.|..-|.+..+-. .-+...+|.|...|.-.|+.+.|..++......+-. |..+-..|.-+....|+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCC
Confidence 999999999999999999999874 446667788888888999999999999999876433 67777788889999999
Q ss_pred HHHHHHHHHHHH
Q 003872 748 LKEAHYFLKMML 759 (790)
Q Consensus 748 ~~~A~~~~~~m~ 759 (790)
+++|..+...-.
T Consensus 218 ~~~A~~i~~~e~ 229 (257)
T COG5010 218 FREAEDIAVQEL 229 (257)
T ss_pred hHHHHhhccccc
Confidence 999988876654
No 117
>PLN02789 farnesyltranstransferase
Probab=98.32 E-value=0.0006 Score=67.65 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=51.6
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---CC----HHHHHHHHHHHHhCCCCCCHH
Q 003872 235 DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVV---GK----VKDALIVWEELKGSGHEPNEF 307 (790)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---~~----~~~a~~~~~~~~~~g~~~~~~ 307 (790)
+..+|+.....+...|+++++++.++++.+.++. +...|+....++.+. |. .++.++...+..... +-+..
T Consensus 141 Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~S 218 (320)
T PLN02789 141 NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNES 218 (320)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcC
Confidence 3445555555555555555555555555554433 334444433333222 11 133444444444332 34455
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003872 308 THRIIIQGCCKS----YRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMF 352 (790)
Q Consensus 308 ~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 352 (790)
.|+.+...+... +...+|.+.+.+..+.++ .+......|+..|+
T Consensus 219 aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~ 266 (320)
T PLN02789 219 PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHH
Confidence 555555555442 222345555555444321 23444455555554
No 118
>PLN02789 farnesyltranstransferase
Probab=98.30 E-value=0.0008 Score=66.79 Aligned_cols=203 Identities=8% Similarity=-0.036 Sum_probs=87.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHHH
Q 003872 250 GDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVG-KVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRM--DDAM 326 (790)
Q Consensus 250 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~--~~a~ 326 (790)
+..++|+.+..++.+.... +..+|+..-.++...| ++++++..++++.+.. +.+..+|+.....+.+.+.. ++++
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 4444555555555443111 2223333333333333 3455555555554432 23333344333333333331 3445
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CC----HHHHHHHH
Q 003872 327 KIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRN---GR----AEAAYTLF 399 (790)
Q Consensus 327 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~a~~~~ 399 (790)
.+++.+.+...+ +..+|+.....+...|+++++++.++.+++.+. -+..+|+.....+.+. |. .++.+++.
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 555555443322 444555555555555555555555555555442 2333444433333322 11 13344444
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 003872 400 CDLKKKGKFVDGITFSIVVLQLCRE----GQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHK 458 (790)
Q Consensus 400 ~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 458 (790)
.++...... |...|+-+...+... +...+|..++.+....++. +...+..|+..|+.
T Consensus 207 ~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 444444322 444454444444441 2334455555555443322 45555556665554
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00071 Score=61.93 Aligned_cols=151 Identities=20% Similarity=0.142 Sum_probs=71.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 003872 278 IQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFK---- 353 (790)
Q Consensus 278 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 353 (790)
...|+..|++++|++...... +......=+..+.+..+.+-|.+.++.|.+- -+..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 344555555555555544411 1122222233344455555555555555543 233444444444432
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC-HHHHHH
Q 003872 354 SRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQ-IEEALR 432 (790)
Q Consensus 354 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~ 432 (790)
.+.+..|.-+|++|.++ ..|+..+.+....++...+++++|..+++....+... ++.+...++-+-...|. .+...+
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHH
Confidence 23455555666665543 2455555555555555666666666666665555433 33443333333333333 233344
Q ss_pred HHHHHHh
Q 003872 433 LVEEMEG 439 (790)
Q Consensus 433 ~~~~m~~ 439 (790)
.+.++..
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 4444443
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.00016 Score=75.49 Aligned_cols=221 Identities=11% Similarity=-0.013 Sum_probs=132.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcC
Q 003872 151 SLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQK 230 (790)
Q Consensus 151 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 230 (790)
+|-...-..+...+...|-...|..+|+++ ..|..++.+|...|+..+|..+..+..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------------------emw~~vi~CY~~lg~~~kaeei~~q~le-- 452 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------------------EMWDPVILCYLLLGQHGKAEEINRQELE-- 452 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------------------HHHHHHHHHHHHhcccchHHHHHHHHhc--
Confidence 344444555566666677777777777664 2355566677777777777666666654
Q ss_pred CCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003872 231 EFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHR 310 (790)
Q Consensus 231 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 310 (790)
-+|+...|..+.+......-+++|.++.+....+ .-..+.....+.+++.++.+.|+.-.+.. +....+|-
T Consensus 453 -k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf 523 (777)
T KOG1128|consen 453 -KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWF 523 (777)
T ss_pred -CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHH
Confidence 3556666666666666555666666666554322 11111112223566677777766655443 44455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003872 311 IIIQGCCKSYRMDDAMKIFSEMQYNGLIP-DTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRN 389 (790)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~ 389 (790)
..-.+..+.++++.|.+.|...... .| +...||.+-.+|.+.++-.+|...+.+..+-+ .-+...|...+....+.
T Consensus 524 ~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 524 GLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDV 600 (777)
T ss_pred hccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhc
Confidence 6666666667777777777666653 23 34467777777777777777777777766655 23344555556666666
Q ss_pred CCHHHHHHHHHHHHhC
Q 003872 390 GRAEAAYTLFCDLKKK 405 (790)
Q Consensus 390 ~~~~~a~~~~~~~~~~ 405 (790)
|.+++|++.+.++...
T Consensus 601 ge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLDL 616 (777)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 7777777776665543
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.26 E-value=0.0002 Score=65.61 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=74.2
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003872 202 ACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVL 281 (790)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 281 (790)
..+.++....+.|++.+|...+++.. ..-++|...|+.+.-+|.+.|+++.|..-|.+..+.-.. +...++.+.-.+
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~--~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~ 178 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAA--RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSL 178 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHh--ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHH
Confidence 34445555555566666666665555 334556666666666666666666666666666655322 445556666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSE 331 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 331 (790)
.-.|+.+.|..++......+ .-|...-..+.......|+++.|.++...
T Consensus 179 ~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 66666666666666665553 33455555555666666666666665543
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.26 E-value=0.00025 Score=68.32 Aligned_cols=185 Identities=12% Similarity=0.014 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccc
Q 003872 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSP---NVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVV 194 (790)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (790)
....+..+...+...|++++|...|+++..... .++ .++..+..++...|++++|...++++++...
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p--------- 101 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP--------- 101 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---------
Confidence 344555555666666666666666666655432 111 3455556666666666666666666665421
Q ss_pred ccCCCcc---hHHHHHHHHHhc--------cchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHH
Q 003872 195 ESLPGCV---ACNELLVALRKS--------DRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMK 263 (790)
Q Consensus 195 ~~~~~~~---~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 263 (790)
.+.. ++..+...+... |++++|.+.|+.+.... +-+...+..+..... .. ....
T Consensus 102 ---~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~------~~~~ 166 (235)
T TIGR03302 102 ---NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LR------NRLA 166 (235)
T ss_pred ---CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HH------HHHH
Confidence 1111 233333333332 67888888888887631 112222222211100 00 0000
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 264 EKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSG--HEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 264 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
.....+...+.+.|++.+|...++...... .+.....+..+..++...|++++|..+++.+...
T Consensus 167 --------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 --------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 011245567888899999999999887652 1223567888888999999999999988888765
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.22 E-value=0.00054 Score=63.11 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=122.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMG 675 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 675 (790)
.-+..|...|+++.+......+.. |. . .+...++.+++...++...+.. +.|...|..+...|...|
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC
Confidence 345778889998887555433221 11 0 1223677788888888888763 568889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHH
Q 003872 676 RADLASTILDKLMKQGGGYLDVVMYNTLINVL-GKAGR--FDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAH 752 (790)
Q Consensus 676 ~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 752 (790)
+++.|...+++..+.. +-+...+..+..++ ...|+ .++|.+++++..+.+.. +...+..+...+...|++++|+
T Consensus 88 ~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 88 DYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999874 44777788887764 67777 59999999999986322 5788889999999999999999
Q ss_pred HHHHHHHhCCCCCCccchhHH
Q 003872 753 YFLKMMLDSGCTPNHVTDTTL 773 (790)
Q Consensus 753 ~~~~~m~~~~~~p~~~t~~~l 773 (790)
..++++.+. .+|+..-..++
T Consensus 165 ~~~~~aL~l-~~~~~~r~~~i 184 (198)
T PRK10370 165 ELWQKVLDL-NSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHhh-CCCCccHHHHH
Confidence 999999876 35555444444
No 124
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.19 E-value=0.016 Score=62.53 Aligned_cols=225 Identities=17% Similarity=0.124 Sum_probs=150.3
Q ss_pred HhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHH--HHhccchHHHHHHHHHHHhcCCCCCchhhHHHH
Q 003872 165 VRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVA--LRKSDRRSEFKQVFERLKEQKEFEFDIYGYNIC 242 (790)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 242 (790)
...+++..|.....++++. .|+. .|...+.+ +.+.|+.++|..+++..... +.. |..|...+
T Consensus 20 ld~~qfkkal~~~~kllkk-------------~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~~~-D~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK-------------HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGL-KGT-DDLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH-------------CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccC-CCC-chHHHHHH
Confidence 3456778888888888774 3443 23334444 46889999999888887652 222 78889999
Q ss_pred HHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-
Q 003872 243 IHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYR- 321 (790)
Q Consensus 243 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~- 321 (790)
-.+|...++.++|..+|+...+. .|+..-...+..+|++.+.+.+-.+.--++.+. ++-+.+.+..++..+...-.
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~ 160 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFS 160 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccC
Confidence 99999999999999999999877 677777777888888888776544443333332 34556667777776654321
Q ss_pred ---------HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHcC
Q 003872 322 ---------MDDAMKIFSEMQYNG-LIPDTVVYNSLLNGMFKSRKVMEACQLFEK-MVQDGVRTSCWTHNILIDGLFRNG 390 (790)
Q Consensus 322 ---------~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~l~~~-~~~~~~~~~~~~~~~li~~~~~~~ 390 (790)
..-|.+.++.+.+.+ -.-+..-...-...+...|++++|+.++.. ..+.-..-+...-+.-+..+...+
T Consensus 161 ~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~ 240 (932)
T KOG2053|consen 161 ENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLN 240 (932)
T ss_pred CcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc
Confidence 234666677776553 111222222333445677889999998843 333333334444556677788889
Q ss_pred CHHHHHHHHHHHHhCCCC
Q 003872 391 RAEAAYTLFCDLKKKGKF 408 (790)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~ 408 (790)
++.+..++..++...|..
T Consensus 241 ~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 241 RWQELFELSSRLLEKGND 258 (932)
T ss_pred ChHHHHHHHHHHHHhCCc
Confidence 999999999888888643
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.17 E-value=0.00084 Score=74.51 Aligned_cols=168 Identities=7% Similarity=0.028 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccccc
Q 003872 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNV-YDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
+...+..|+..+...+++++|.++.+...+ ..|+... |-.+...+...++...+.-+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------- 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL--NL---------------- 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh--hh----------------
Confidence 556778888888888888888888885544 5665543 33333455566665555433 22
Q ss_pred CCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 197 LPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 197 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
+.......++.-+..+...|.. ..-+..++-.+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.
T Consensus 90 ----------l~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn 155 (906)
T PRK14720 90 ----------IDSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKK 155 (906)
T ss_pred ----------hhhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHH
Confidence 2222233333333333334433 22344567777888888888888888888888776 336777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
+...|... ++++|.+++.+..+. +...+++..+.+++.++...
T Consensus 156 ~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 156 LATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 88888877 888888887776543 44445566666666666554
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.17 E-value=0.00017 Score=62.64 Aligned_cols=92 Identities=9% Similarity=-0.117 Sum_probs=48.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003872 631 SMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKA 710 (790)
Q Consensus 631 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 710 (790)
.+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+.+.... +.+...+..+..++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHc
Confidence 34445555555555555555555442 2244455555555555555555555555555432 33444555555555555
Q ss_pred CCHHHHHHHHHHHHh
Q 003872 711 GRFDEANMLFEQMRT 725 (790)
Q Consensus 711 g~~~~A~~~~~~m~~ 725 (790)
|++++|...|++..+
T Consensus 106 g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 106 GEPGLAREAFQTAIK 120 (144)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555554
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.16 E-value=0.0003 Score=70.25 Aligned_cols=152 Identities=18% Similarity=0.077 Sum_probs=123.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCC
Q 003872 598 LSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD-IATYNVVIQGLGKMGR 676 (790)
Q Consensus 598 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~ 676 (790)
...+...|.+++|+..++.++..- +-|+..+......+.+.++..+|.+.++++... .|+ ....-.+..+|.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCC
Confidence 334556789999999999988763 445555566777899999999999999999986 455 6667778899999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHH
Q 003872 677 ADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLK 756 (790)
Q Consensus 677 ~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 756 (790)
+++|..+++..... .+-|...|..|..+|...|+..+|..-. ...+...|+++.|+..+.
T Consensus 390 ~~eai~~L~~~~~~--~p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 390 PQEAIRILNRYLFN--DPEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLM 449 (484)
T ss_pred hHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHH
Confidence 99999999998877 4678889999999999999988776543 356777899999999999
Q ss_pred HHHhCCCCCCccchhHH
Q 003872 757 MMLDSGCTPNHVTDTTL 773 (790)
Q Consensus 757 ~m~~~~~~p~~~t~~~l 773 (790)
...+. +.++..+|.-.
T Consensus 450 ~A~~~-~~~~~~~~aR~ 465 (484)
T COG4783 450 RASQQ-VKLGFPDWARA 465 (484)
T ss_pred HHHHh-ccCCcHHHHHH
Confidence 99876 56777776544
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.13 E-value=0.00013 Score=67.10 Aligned_cols=125 Identities=9% Similarity=0.049 Sum_probs=102.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhcCC--HHHH
Q 003872 604 KGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG-LGKMGR--ADLA 680 (790)
Q Consensus 604 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~--~~~A 680 (790)
.++.+++...++...+.. +.+...|..|...|...|++++|...|++..+.. +.+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 456677887888877766 7788999999999999999999999999999874 3477788888876 467777 5999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH
Q 003872 681 STILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVV 733 (790)
Q Consensus 681 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 733 (790)
.+++++..+.. +-+...+..+...+...|++++|...|+++.+. ..|+..
T Consensus 130 ~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~ 179 (198)
T PRK10370 130 REMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVN 179 (198)
T ss_pred HHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCcc
Confidence 99999999975 446778888888999999999999999999985 344443
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0067 Score=55.82 Aligned_cols=159 Identities=20% Similarity=0.154 Sum_probs=110.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh---
Q 003872 597 FLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK--- 673 (790)
Q Consensus 597 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--- 673 (790)
-...|+..+++++|++..+... +......=...+.+..+.+.|.+.+++|.+- .+..|.+-|..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 3456777888888888776522 2222322334566777888889999988885 355677766666644
Q ss_pred -cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHH-HH
Q 003872 674 -MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLK-EA 751 (790)
Q Consensus 674 -~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~-~A 751 (790)
.+.+..|.-+|+++-++ ..|+..+.+.+..++...|++++|..++++...+... +..+...++-+-...|... ..
T Consensus 185 ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred cchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHH
Confidence 34688888899888776 6788888888888888889999999999988875333 5666666666666667654 34
Q ss_pred HHHHHHHHhCCCCCCccc
Q 003872 752 HYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 752 ~~~~~~m~~~~~~p~~~t 769 (790)
.+.+.+++.. .|.+.-
T Consensus 262 ~r~l~QLk~~--~p~h~~ 277 (299)
T KOG3081|consen 262 ERNLSQLKLS--HPEHPF 277 (299)
T ss_pred HHHHHHHHhc--CCcchH
Confidence 5667777643 455443
No 130
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=6.5e-06 Score=51.35 Aligned_cols=33 Identities=48% Similarity=0.695 Sum_probs=19.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 003872 734 TFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPN 766 (790)
Q Consensus 734 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 766 (790)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455666666666666666666666665565555
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.05 E-value=0.0021 Score=71.41 Aligned_cols=223 Identities=10% Similarity=0.020 Sum_probs=121.6
Q ss_pred cCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHH
Q 003872 196 SLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYN 275 (790)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 275 (790)
.+.+...+..|+..+...+++++|.++.+...+..+-. ...|-.+...+.+.++...+..+ .+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~--i~~yy~~G~l~~q~~~~~~~~lv--~~l------------ 90 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS--ISALYISGILSLSRRPLNDSNLL--NLI------------ 90 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc--eehHHHHHHHHHhhcchhhhhhh--hhh------------
Confidence 45567888999999999999999999999777632222 23333333366666666555544 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003872 276 SLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSR 355 (790)
Q Consensus 276 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 355 (790)
.......++..+..+...|... .-+...+..+..+|-+.|+.++|..+++++.+.. +-|..+.|.+...|...
T Consensus 91 ---~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 91 ---DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred ---hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-
Confidence 2222222333333333333332 2223344555555555566666666666655554 22455555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------------------CCCCCHhhHHH
Q 003872 356 KVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK-------------------GKFVDGITFSI 416 (790)
Q Consensus 356 ~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~ 416 (790)
+.++|.+++...... +...+++..+.++|.++... +..--..++-.
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~ 228 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLED 228 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHH
Confidence 555555555554432 22222333333333333322 11112334444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003872 417 VVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFH 457 (790)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 457 (790)
+-..|-..++++++..+++.+++.... |.....-++.+|.
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 556666777788888888888776444 5566666777665
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.04 E-value=0.00026 Score=61.49 Aligned_cols=100 Identities=12% Similarity=-0.023 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ 669 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 669 (790)
++..+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+...+..+..
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~ 100 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGV 100 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 44446667888899999999999999998876 6688899999999999999999999999999873 457889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhC
Q 003872 670 GLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
++...|+.++|...|+..++..
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999864
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.02 E-value=0.0024 Score=70.27 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=42.2
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK 655 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 655 (790)
+.+......+..++.+.|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|+...+.
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456666666666666666666666666666532 334566666666666666666666666666654
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.98 E-value=0.00045 Score=59.70 Aligned_cols=106 Identities=13% Similarity=0.068 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 003872 661 IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIE 740 (790)
Q Consensus 661 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 740 (790)
......+...+...|++++|.+.++.+...+ +.+...|..+..++.+.|++++|..++++....+ +.+...+..+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 3445556666777778888888887776653 3466677777777777788888888887776642 334666667777
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCccchh
Q 003872 741 VNGKAGRLKEAHYFLKMMLDSGCTPNHVTDT 771 (790)
Q Consensus 741 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 771 (790)
.+...|++++|..++++..+. .|+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 777888888888888777754 56555543
No 135
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.97 E-value=0.0037 Score=68.93 Aligned_cols=135 Identities=10% Similarity=-0.064 Sum_probs=86.6
Q ss_pred cCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHH
Q 003872 196 SLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFD-IYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTY 274 (790)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 274 (790)
.+.+...+-.|.......|.+++|..+++...+ +.|+ ......+...+.+.+++++|...+++....... +....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHH
Confidence 344456666666677777777777777777765 3343 455556666667777777777777777665322 44455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 275 NSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 275 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
..+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555566667777777777777776632 334666666667777777777777777766643
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.97 E-value=1.4e-05 Score=49.79 Aligned_cols=34 Identities=59% Similarity=0.843 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 003872 699 MYNTLINVLGKAGRFDEANMLFEQMRTSGINPDV 732 (790)
Q Consensus 699 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 732 (790)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888999999999999999998888888873
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1.4e-05 Score=49.33 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=17.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 003872 734 TFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTP 765 (790)
Q Consensus 734 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 765 (790)
+|++++.+|++.|+++.|.+++++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.93 E-value=0.00043 Score=59.82 Aligned_cols=97 Identities=9% Similarity=-0.006 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINV 706 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~ 706 (790)
.....+...+...|++++|...++.+...+ +.+...+..+...|...|+++.|..+++...... +.+...+..+..+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 344455556666777777777777666643 3355666666666777777777777777666542 3345555566666
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 003872 707 LGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 707 ~~~~g~~~~A~~~~~~m~~~ 726 (790)
|...|++++|.+.|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777766663
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=2e-05 Score=48.63 Aligned_cols=33 Identities=39% Similarity=0.683 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003872 698 VMYNTLINVLGKAGRFDEANMLFEQMRTSGINP 730 (790)
Q Consensus 698 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 730 (790)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888887776
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.91 E-value=0.00037 Score=70.47 Aligned_cols=122 Identities=15% Similarity=0.161 Sum_probs=78.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003872 630 NSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK 709 (790)
Q Consensus 630 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 709 (790)
..|+..+...++++.|+.+++++.+.. |+ ....++..+...++-.+|.+++.+.+... +-+...+..-...|.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHh
Confidence 344445555667777777777776653 33 23345566666666667777777776552 3455555656666677
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 710 AGRFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 710 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
.++++.|.++.+++... .|+ ..+|..|..+|.+.|++++|+..++.|.
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777763 443 5577777777777777777777777665
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.91 E-value=0.0038 Score=62.66 Aligned_cols=119 Identities=14% Similarity=0.057 Sum_probs=56.1
Q ss_pred HHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCc-hhhHHHH
Q 003872 164 LVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFD-IYGYNIC 242 (790)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 242 (790)
+...|+++.|+..++.++.. .+.|...+......+.+.++..+|.+.++.+.. ..|+ ....-.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA------------QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred HHHhcccchHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 33445555555555554443 223333333344445555555555555555543 1222 3333444
Q ss_pred HHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 243 IHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELK 298 (790)
Q Consensus 243 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 298 (790)
..++.+.|++.+|..+++...... +-|+..|..|..+|...|+..++..-..+..
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 455555555555555555554432 2244555555555555555555554444443
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.01 Score=54.25 Aligned_cols=124 Identities=17% Similarity=0.175 Sum_probs=97.5
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 003872 599 SIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRAD 678 (790)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 678 (790)
..+-..|++++|.++++.+.+.. +.|.+++---+-..-..|..-+|++-+.+..+. +..|...|.-+...|...|+++
T Consensus 94 m~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 94 MLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHH
Confidence 34456789999999999998887 667777776666677788888998888888877 6679999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhc
Q 003872 679 LASTILDKLMKQGGGYLDVVMYNTLINVLGKAG---RFDEANMLFEQMRTS 726 (790)
Q Consensus 679 ~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 726 (790)
+|.-.+++++-.. +-+...+..+.+.+...| +++-|+++|.+..+.
T Consensus 172 kA~fClEE~ll~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 172 KAAFCLEELLLIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999998863 335555566666655444 567788899988874
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.015 Score=53.22 Aligned_cols=151 Identities=16% Similarity=0.173 Sum_probs=70.8
Q ss_pred CChHHHHHHHHHHHHh---C-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcc-hHHHH
Q 003872 133 GKIDFAIEILDYMEEL---G-TSLSPN-VYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCV-ACNEL 206 (790)
Q Consensus 133 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 206 (790)
.+.++.++++..+... | ..++.. .|..++-+....|+.+.|....+++.... |.+. +-..-
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-------------p~S~RV~~lk 92 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-------------PGSKRVGKLK 92 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-------------CCChhHHHHH
Confidence 4455566666555432 2 233333 35555566666666666666666655541 1111 11111
Q ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 003872 207 LVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGK 286 (790)
Q Consensus 207 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 286 (790)
...+-..|++++|+++++.+.+. -|.|..++-.=+...-..|..-+|++-+....+. +..|...|.-+...|...|+
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhH
Confidence 12233345555555555555531 1333444443333333344444444444444433 23345555555555555555
Q ss_pred HHHHHHHHHHHHh
Q 003872 287 VKDALIVWEELKG 299 (790)
Q Consensus 287 ~~~a~~~~~~~~~ 299 (790)
+++|.-.++++.-
T Consensus 170 f~kA~fClEE~ll 182 (289)
T KOG3060|consen 170 FEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.88 E-value=0.00056 Score=69.23 Aligned_cols=129 Identities=18% Similarity=0.178 Sum_probs=107.7
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
.+-....+|+..+...++++.|..+|+++.+.. |+ ....+...+...++-.+|.+++++.++. .+.+...+..-.
T Consensus 167 ~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa 241 (395)
T PF09295_consen 167 VNNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQA 241 (395)
T ss_pred cchHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 355566778888888899999999999999774 54 4445788888889999999999999976 345777777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 669 QGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
..|.+.++++.|+++.+++.+. .+-+..+|..|..+|...|++++|+-.+..+.
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8899999999999999999986 34456699999999999999999999888775
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.75 E-value=0.0012 Score=57.73 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=55.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCH
Q 003872 639 KGYFNQAWGVLNEMGEKFCPTD---IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD--VVMYNTLINVLGKAGRF 713 (790)
Q Consensus 639 ~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~ 713 (790)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+.... ..|+ ......+..++...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 455555555555555442 111 1112223344555566666666666655543 1111 11233345555556666
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHH
Q 003872 714 DEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKM 757 (790)
Q Consensus 714 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 757 (790)
++|+..++...... .....+....++|.+.|++++|...|++
T Consensus 102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666665433221 2233445555666666666666666554
No 146
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.72 E-value=0.00078 Score=66.07 Aligned_cols=145 Identities=10% Similarity=0.072 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVK-KGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG 670 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 670 (790)
.+|..++.+.-+.+..+.|..+|.+..+.+ ..+...|......... .++.+.|..+|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 367788888888888999999999998654 3345555555555333 56777799999998887 66688889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 003872 671 LGKMGRADLASTILDKLMKQGGGYL-DVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIE 740 (790)
Q Consensus 671 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 740 (790)
+.+.++.+.|..+|++.+..-+... ....|..++..-.+.|+++.+.++.+++.+. .|+...+..+++
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 9999999999999999887621112 2358999999889999999999999998874 444444444444
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.71 E-value=0.0021 Score=56.15 Aligned_cols=128 Identities=14% Similarity=0.113 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHH
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNY---TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD--IATYN 665 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~ 665 (790)
...|..++..+ ..++...+...++.+.+.. +.+.. ..-.+...+...|++++|...|+........|. .....
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34566666666 4889999999999998764 33322 233355678889999999999999998753332 22445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 666 VVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQM 723 (790)
Q Consensus 666 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 723 (790)
.|...+...|++++|+..++.... .......+....++|.+.|+.++|+..|+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPD---EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 577888999999999999977432 2345667778899999999999999999864
No 148
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.67 E-value=0.075 Score=53.04 Aligned_cols=465 Identities=14% Similarity=0.082 Sum_probs=235.2
Q ss_pred HhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q 003872 165 VRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIH 244 (790)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 244 (790)
-+.+++.+|..+|.++.+....... ........+.++++|.. ++.+.....+....+..|- ..|-.+..
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f------~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~----s~~l~LF~ 85 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPF------LLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGK----SAYLPLFK 85 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchH------HHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCC----chHHHHHH
Confidence 3456666666666666554221100 01112344556666654 3445555555555543332 22333333
Q ss_pred H--HhccCChHHHHHHHHHHHHC--CCCC------------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 003872 245 A--FGCWGDLHTSLRLFKEMKEK--GLVP------------DLHTYNSLIQVLCVVGKVKDALIVWEELKGS----GHEP 304 (790)
Q Consensus 245 ~--~~~~g~~~~a~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~ 304 (790)
+ +.+.+++.+|.+.+..-.+. +..| |-..=+..++.+...|++.++..+++++... ....
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w 165 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW 165 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc
Confidence 3 34667888888777665543 2221 2222245567788899999999888887643 3347
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003872 305 NEFTHRIIIQGCCKSYRMDDAMKIFSEMQY---NGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNI 381 (790)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 381 (790)
+..+|+.++-.+.++ +|-++.+ ..+-|+ |--++-.|.+. ...++...-..+.|....+..
T Consensus 166 ~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kk------i~~~d~~~Y~k~~peeeL~s~ 228 (549)
T PF07079_consen 166 NSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKK------IHAFDQRPYEKFIPEEELFST 228 (549)
T ss_pred cHHHHHHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHH------HHHHhhchHHhhCcHHHHHHH
Confidence 788888877666553 3434432 123333 22333333321 111111111123344444444
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcc----CHHHHHHHHH
Q 003872 382 LIDGLFRN--GRAEAAYTLFCDLKKKGKFVDGI-TFSIVVLQLCREGQIEEALRLVEEMEGRGFVV----DLVTISSLLI 454 (790)
Q Consensus 382 li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~~l~~ 454 (790)
++....-. .+..--+++++.-...-+.|+.. ....+...+.+ +.+++..+.+.+....+.+ =..++..++.
T Consensus 229 imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls 306 (549)
T PF07079_consen 229 IMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLS 306 (549)
T ss_pred HHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44444322 12222233333334444445432 22333333333 5566665555554432221 2346777778
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCC
Q 003872 455 GFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGE 534 (790)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (790)
...+.++...|.+.+..+.-- .|+.. +.
T Consensus 307 ~~Vk~~~T~~a~q~l~lL~~l--dp~~s-vs------------------------------------------------- 334 (549)
T PF07079_consen 307 FKVKQVQTEEAKQYLALLKIL--DPRIS-VS------------------------------------------------- 334 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHhc--CCcch-hh-------------------------------------------------
Confidence 888888888888777765542 11111 00
Q ss_pred CCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHH-HHHHcCChHHHHHH
Q 003872 535 GDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLS-IFLAKGKLNLACKL 613 (790)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~ 613 (790)
..+ ..++..+..++. -=....+...-+.+
T Consensus 335 ------------------~Kl--------------------------------lls~~~lq~Iv~~DD~~~Tklr~yL~l 364 (549)
T PF07079_consen 335 ------------------EKL--------------------------------LLSPKVLQDIVCEDDESYTKLRDYLNL 364 (549)
T ss_pred ------------------hhh--------------------------------hcCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 000 000001111110 00001122233455
Q ss_pred HHHHHhCCCCCChhhHHHHHHH---HHhcCC-HHHHHHHHHHHhhcCCCCCHHHHHHHHH----HHHhc---CCHHHHHH
Q 003872 614 FEIFTDMGVHPVNYTYNSMMSS---FVKKGY-FNQAWGVLNEMGEKFCPTDIATYNVVIQ----GLGKM---GRADLAST 682 (790)
Q Consensus 614 ~~~~~~~g~~~~~~~~~~li~~---~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~----~~~~~---g~~~~A~~ 682 (790)
++......+. .......|+.+ +-+.|. -++|+++++.+.+. -..|..+-|.+.. +|.+. ..+.+-..
T Consensus 365 we~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlk 442 (549)
T PF07079_consen 365 WEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLK 442 (549)
T ss_pred HHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 5555554321 11222333333 333444 78899999988875 2345554444332 33222 22333333
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHH
Q 003872 683 ILDKLMKQGGGYLD----VVMYNTLINV--LGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLK 756 (790)
Q Consensus 683 ~~~~~~~~~~~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 756 (790)
+-+-+.+.| +.|- ...-|.|.++ +...|+++++.-.-..+.+ +.|++.+|..+.-++....++++|++++.
T Consensus 443 Le~fi~e~g-l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 443 LEDFITEVG-LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHhcC-CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333333333 6653 3345555544 3467999999877776665 78999999999999999999999999998
Q ss_pred HHHhCCCCCCccchh
Q 003872 757 MMLDSGCTPNHVTDT 771 (790)
Q Consensus 757 ~m~~~~~~p~~~t~~ 771 (790)
++ +||..+++
T Consensus 520 ~L-----P~n~~~~d 529 (549)
T PF07079_consen 520 KL-----PPNERMRD 529 (549)
T ss_pred hC-----CCchhhHH
Confidence 76 56666654
No 149
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.67 E-value=0.076 Score=52.84 Aligned_cols=85 Identities=14% Similarity=0.216 Sum_probs=67.0
Q ss_pred cCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHH
Q 003872 196 SLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYN 275 (790)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 275 (790)
.+.|...|-.|+..|...+.+++..+++++|.. .++--..+|..-+++-....++.....+|.+...... +...|.
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~--pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~ 113 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSS--PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWM 113 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC--CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHH
Confidence 567788999999999999999999999999984 4555567788888888888999999999999887743 455566
Q ss_pred HHHHHHHhc
Q 003872 276 SLIQVLCVV 284 (790)
Q Consensus 276 ~ll~~~~~~ 284 (790)
..+....+.
T Consensus 114 lYl~YIRr~ 122 (660)
T COG5107 114 LYLEYIRRV 122 (660)
T ss_pred HHHHHHHhh
Confidence 555544443
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=5.6e-05 Score=45.38 Aligned_cols=29 Identities=34% Similarity=0.477 Sum_probs=15.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 003872 734 TFNTLIEVNGKAGRLKEAHYFLKMMLDSG 762 (790)
Q Consensus 734 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 762 (790)
+|++++++|++.|++++|.+++++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.64 E-value=5.6e-05 Score=45.38 Aligned_cols=30 Identities=47% Similarity=0.777 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003872 699 MYNTLINVLGKAGRFDEANMLFEQMRTSGI 728 (790)
Q Consensus 699 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 728 (790)
+|++++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
No 152
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.64 E-value=0.00098 Score=67.76 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=67.9
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003872 269 PDLHTYNSLIQVLCVVGKVKDALIVWEELKGS--GHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNS 346 (790)
Q Consensus 269 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 346 (790)
.+......+++.+....+++.+..++.+.... ....-..|..++|+.|...|..+.++.+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34445555555555555566666666555543 1112223444666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003872 347 LLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFR 388 (790)
Q Consensus 347 li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~ 388 (790)
||..+.+.|++..|.++..+|...+...+..++..-+.+|.+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 666666666666666666666555544444555444444443
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.62 E-value=0.0013 Score=64.42 Aligned_cols=131 Identities=16% Similarity=0.130 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG-LGKMGRADLASTILDKLMKQGGGYLDVVMYNTLIN 705 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~ 705 (790)
.+|..+|+...+.+..+.|..+|+++.+.+ ..+..+|...... |...++.+.|.++|+..++. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468889999999999999999999998653 2234445444444 33357888899999999988 5778889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 706 VLGKAGRFDEANMLFEQMRTSGINPD---VVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 706 ~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
.+.+.|+.+.|+.+|++.... +.++ ...|..++.-=.+.|+++.+..+.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999875 3332 258999999989999999999999999864
No 154
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.61 E-value=0.00091 Score=68.00 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 003872 340 DTVVYNSLLNGMFKSRKVMEACQLFEKMVQD--GVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIV 417 (790)
Q Consensus 340 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 417 (790)
+......+++.+....+++.+..++...... ....-..|..++++.|.+.|..+.++.+++.=...|+.||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3334444444444444455555555444432 11111233345555555555555555555555555555666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhc
Q 003872 418 VLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKY 459 (790)
Q Consensus 418 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 459 (790)
++.+.+.|++..|.++..+|...+...+..++...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666655555555554444444444444444443
No 155
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.59 E-value=0.0012 Score=51.94 Aligned_cols=75 Identities=19% Similarity=0.450 Sum_probs=37.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003872 313 IQGCCKSYRMDDAMKIFSEMQYNGL-IPDTVVYNSLLNGMFKSR--------KVMEACQLFEKMVQDGVRTSCWTHNILI 383 (790)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~--------~~~~a~~l~~~~~~~~~~~~~~~~~~li 383 (790)
|..+...+++.....+|+.++++|+ .|+..+|+.++.+.++.. ++-..+.+|..|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333344555555555555555555 455555555555444321 1223445555555555555555555555
Q ss_pred HHHH
Q 003872 384 DGLF 387 (790)
Q Consensus 384 ~~~~ 387 (790)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5543
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.55 E-value=0.0026 Score=53.38 Aligned_cols=99 Identities=13% Similarity=-0.007 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCChHHHHHHH
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQGGGYL-DVVMYNTLINVLGKAGRFDEANMLFEQMRTSG--INPDVVTFNTLI 739 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~ 739 (790)
++..+...+.+.|++++|.+.|+.+....+-.+ ....+..+..++.+.|++++|.+.|+.+.... ......++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344445555666666666666666665431111 12344456666666666666666666666521 111234455666
Q ss_pred HHHhccCCHHHHHHHHHHHHhC
Q 003872 740 EVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 740 ~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666677777776666654
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.52 E-value=0.00022 Score=55.37 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHH
Q 003872 674 MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHY 753 (790)
Q Consensus 674 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 753 (790)
.|+++.|+.+++++.+..+..++...+..+..+|.+.|++++|..++++ ...+. .+....-.+..+|...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4677778888877777642122444555577777778888888888777 32211 123444455777777888888877
Q ss_pred HHHH
Q 003872 754 FLKM 757 (790)
Q Consensus 754 ~~~~ 757 (790)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 158
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.49 E-value=0.0014 Score=51.56 Aligned_cols=76 Identities=20% Similarity=0.366 Sum_probs=45.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003872 242 CIHAFGCWGDLHTSLRLFKEMKEKGL-VPDLHTYNSLIQVLCVVG--------KVKDALIVWEELKGSGHEPNEFTHRII 312 (790)
Q Consensus 242 li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~~l 312 (790)
.|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455777777777777777777 677777777776665532 233445555555555555666666555
Q ss_pred HHHHH
Q 003872 313 IQGCC 317 (790)
Q Consensus 313 i~~~~ 317 (790)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55543
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.2 Score=52.82 Aligned_cols=179 Identities=12% Similarity=0.067 Sum_probs=90.8
Q ss_pred cCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhH--------HHHHHHHhccCChHHHHHHHHHHHHCCC
Q 003872 196 SLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGY--------NICIHAFGCWGDLHTSLRLFKEMKEKGL 267 (790)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------~~li~~~~~~g~~~~a~~~~~~m~~~g~ 267 (790)
..|.+..|..|.......-.++.|+..|-+...-.|++.--..- .+=+.+ --|.+++|.++|-+|..+.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh-
Confidence 56777788888877777777777877776655423332111110 111111 2266777777776665542
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003872 268 VPDLHTYNSLIQVLCVVGKVKDALIVWEELKGS-GHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNS 346 (790)
Q Consensus 268 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 346 (790)
..+..+.+.|++-.+.++++.--.. .-..-...|+.+...+.....+++|.+.|..-... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 2345555666666665555431100 00011235666666666666666666665443211 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003872 347 LLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLF 399 (790)
Q Consensus 347 li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 399 (790)
.+.++.+..++++.+.+.+.+.+ +....-.+..++.+.|.-++|.+.+
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence 34444444444444444433332 3334445555566666665555544
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.40 E-value=0.012 Score=62.90 Aligned_cols=146 Identities=15% Similarity=0.018 Sum_probs=98.0
Q ss_pred CCCCChhhHHHHHHHHHh--c---CCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHH
Q 003872 621 GVHPVNYTYNSMMSSFVK--K---GYFNQAWGVLNEMGEKFCPTD-IATYNVVIQGLGKM--------GRADLASTILDK 686 (790)
Q Consensus 621 g~~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~~~ 686 (790)
+.+.+...|...+++... . ++...|..+|+++++. .|+ ...|..+..+|... +++..+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 346677888888877543 2 2366888888888886 344 33444333333221 123444555554
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 003872 687 LMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPN 766 (790)
Q Consensus 687 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 766 (790)
.........+...|.++.-.+...|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++..+. .|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 4443213445677777766677789999999999999985 478889999999999999999999999998743 666
Q ss_pred ccchhH
Q 003872 767 HVTDTT 772 (790)
Q Consensus 767 ~~t~~~ 772 (790)
.-||..
T Consensus 486 ~pt~~~ 491 (517)
T PRK10153 486 ENTLYW 491 (517)
T ss_pred CchHHH
Confidence 556543
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.40 E-value=0.0064 Score=50.97 Aligned_cols=96 Identities=13% Similarity=0.012 Sum_probs=44.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 003872 631 SMMSSFVKKGYFNQAWGVLNEMGEKFCP--TDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYL-DVVMYNTLINVL 707 (790)
Q Consensus 631 ~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~ 707 (790)
.+...+.+.|++++|...|..+.+.... .....+..+...+.+.|+++.|...++.+....+..+ ....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3444445555555555555555443110 0122334445555555555555555555554321111 123344445555
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 003872 708 GKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 708 ~~~g~~~~A~~~~~~m~~~ 726 (790)
.+.|++++|.+.++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555555543
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.39 E-value=0.0025 Score=50.72 Aligned_cols=91 Identities=20% Similarity=0.130 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc
Q 003872 666 VVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKA 745 (790)
Q Consensus 666 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 745 (790)
.+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.+++..... ..+..++..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 34444555566666666666655542 2233445555555566666666666666655532 22234555566666666
Q ss_pred CCHHHHHHHHHHHH
Q 003872 746 GRLKEAHYFLKMML 759 (790)
Q Consensus 746 g~~~~A~~~~~~m~ 759 (790)
|++++|...++...
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 66666666666554
No 163
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.38 E-value=0.0046 Score=55.41 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=27.7
Q ss_pred CHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 270 DLHTYNSLIQVLCV-----VGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCC 317 (790)
Q Consensus 270 ~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 317 (790)
+-.+|..+++.+.+ .|.++-....+..|.+.|+..|..+|+.|++.+=
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP 98 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP 98 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC
Confidence 44555555555543 3455555566666666666666666666666553
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.35 E-value=0.0036 Score=49.85 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003872 631 SMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKA 710 (790)
Q Consensus 631 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 710 (790)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...... +.+..++..+..++...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHH
Confidence 34445555666666666666655542 2233445555555666666666666666655542 22334555566666666
Q ss_pred CCHHHHHHHHHHHHh
Q 003872 711 GRFDEANMLFEQMRT 725 (790)
Q Consensus 711 g~~~~A~~~~~~m~~ 725 (790)
|++++|...+.+..+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666665543
No 165
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.34 E-value=0.19 Score=50.02 Aligned_cols=110 Identities=13% Similarity=0.088 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003872 308 THRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLF 387 (790)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~ 387 (790)
+.+..|.-+...|+...|.++-.+.. .|+...|...+.+++..+++++..++... . -++..|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 45555666677777777777765552 36777788888888888888776665432 1 23466778888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003872 388 RNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEM 437 (790)
Q Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 437 (790)
+.|+..+|..+...+ .+..-+..|.+.|++.+|.+...+.
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888887777551 1244566777788888777665443
No 166
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.34 E-value=0.013 Score=50.10 Aligned_cols=103 Identities=9% Similarity=-0.001 Sum_probs=81.4
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.+....-.+...+...|++++|..+|+.+.... +-+...|-.|...+-..|++++|+..|....... +.|+..+-.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~a 109 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 3345555677777888899999999998887765 4566667777778888899999999999888875 3577788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCC
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGG 692 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~ 692 (790)
..++...|+.+.|++.|+..+...+
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 8888899999999999988877653
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.27 E-value=0.0037 Score=61.70 Aligned_cols=100 Identities=14% Similarity=0.030 Sum_probs=60.2
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh---CCCCC-
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVV-----VDSETFKLLLEPCIKSGKIDFAIEILDYMEEL---GTSLS- 153 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~- 153 (790)
-...|......|-..|++++|.+.|......... .-...|......|.+. ++++|++.|++.... ...++
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3466778888888889999999888776442111 1123455555555444 888888888777653 11111
Q ss_pred -HHHHHHHHHHHHhc-CChhHHHHHHHHHHHH
Q 003872 154 -PNVYDSVLVSLVRK-KQLGLAMSILFKLLEA 183 (790)
Q Consensus 154 -~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~ 183 (790)
...+..+...|... |+++.|.+.|.+..+.
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 23466666666666 7777777777766554
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.24 E-value=0.087 Score=45.80 Aligned_cols=134 Identities=17% Similarity=0.149 Sum_probs=105.7
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003872 623 HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNT 702 (790)
Q Consensus 623 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 702 (790)
-|++..--.|..+....|++.+|...|.+...--..-|....-.+.++....+++..|...++++.+-..-.-++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 67777777899999999999999999999988767778888899999999999999999999999886522222233445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003872 703 LINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMM 758 (790)
Q Consensus 703 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 758 (790)
+...|...|.+.+|+.-|+..... .|+...-.....-+.+.|+.++|..-+...
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 678888999999999999999985 566655555667778888877765444433
No 169
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.24 E-value=0.0086 Score=53.73 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003872 303 EPNEFTHRIIIQGCCK-----SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCW 377 (790)
Q Consensus 303 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 377 (790)
..+..+|..+++.|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+ |.+- |...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence 5677788888888764 46677778888899999999999999999987654 2211 1111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 003872 378 THNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREG 425 (790)
Q Consensus 378 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 425 (790)
. -.+..-| -.+.+-|++++++|...|+.||..++..+++.+.+.+
T Consensus 108 f-Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 F-QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred H-HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 1 1111111 1234556777777777777777777777777776544
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.18 E-value=0.0078 Score=54.16 Aligned_cols=94 Identities=13% Similarity=0.004 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003872 626 NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT--DIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTL 703 (790)
Q Consensus 626 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 703 (790)
...|..+...+...|++++|+..|++.......+ ...++..+...|...|++++|...+++..... +....++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 4455566666667777777777777776543222 12356666677777777777777777776642 2233445555
Q ss_pred HHHHH-------hcCCHHHHHHHHH
Q 003872 704 INVLG-------KAGRFDEANMLFE 721 (790)
Q Consensus 704 i~~~~-------~~g~~~~A~~~~~ 721 (790)
...+. ..|++++|...++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHH
Confidence 55555 4455554444443
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.17 E-value=0.012 Score=60.02 Aligned_cols=87 Identities=15% Similarity=0.026 Sum_probs=40.4
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003872 636 FVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDE 715 (790)
Q Consensus 636 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 715 (790)
+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..+++++... +.+...|..+..+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCHHH
Confidence 334445555555555544432 1233444444444555555555555555544432 2233444444444555555555
Q ss_pred HHHHHHHHHh
Q 003872 716 ANMLFEQMRT 725 (790)
Q Consensus 716 A~~~~~~m~~ 725 (790)
|...|++...
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.15 E-value=0.08 Score=52.28 Aligned_cols=171 Identities=13% Similarity=0.114 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccc
Q 003872 121 TFKLLLEPCIKSGKIDFAIEILDYMEELGTSL-S----PNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVE 195 (790)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 195 (790)
.|......|...|++++|.+.|.+........ + ...|......|.+. +++.|...+.+.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A--------------- 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA--------------- 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH---------------
Confidence 45556666677777777777777665431110 1 11233333333333 666665555543
Q ss_pred cCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhcc-CChHHHHHHHHHHHHC----CCCC-
Q 003872 196 SLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCW-GDLHTSLRLFKEMKEK----GLVP- 269 (790)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----g~~p- 269 (790)
+..|...|++..|-.++.. +...|-.. |+++.|.+.|++..+. | .+
T Consensus 101 -----------~~~y~~~G~~~~aA~~~~~----------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~ 152 (282)
T PF14938_consen 101 -----------IEIYREAGRFSQAAKCLKE----------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPH 152 (282)
T ss_dssp -----------HHHHHHCT-HHHHHHHHHH----------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HH
T ss_pred -----------HHHHHhcCcHHHHHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-Chh
Confidence 3345556666555444443 33445555 7777777777766532 2 11
Q ss_pred -CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 270 -DLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEP-----NEF-THRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 270 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-----~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
-..++..+...+.+.|++++|.++|+++....... +.. .|-..+-++...|+...|.+.+++....
T Consensus 153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12344555666777777777777777765432111 111 1222233444566777777777776543
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.15 E-value=0.025 Score=51.06 Aligned_cols=89 Identities=13% Similarity=0.018 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD--IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLI 704 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li 704 (790)
..+..+...+...|++++|...|++..+....+. ...+..+...|.+.|++++|...+++++... +-+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence 3455566666777777777777777765432222 3456666777777777777777777777653 22445555556
Q ss_pred HHHHhcCCHHHHH
Q 003872 705 NVLGKAGRFDEAN 717 (790)
Q Consensus 705 ~~~~~~g~~~~A~ 717 (790)
.++...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 6666666543333
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.12 E-value=0.19 Score=48.12 Aligned_cols=76 Identities=12% Similarity=0.078 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSET---FKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLV 165 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 165 (790)
.....+.+.|++++|...|+.+....+. +..+ ...++.++.+.+++++|...|++..+..+......+...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 3455567789999999999999886533 2322 24567888899999999999999998754322233444444443
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.12 E-value=0.15 Score=48.76 Aligned_cols=166 Identities=13% Similarity=0.067 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTY---NSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV 666 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 666 (790)
++..+-.....+...|++++|.+.|+.+...-. -+.... -.+..++.+.+++++|...+++..+....-...-+-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 444444556667788999999999999987642 222332 3456778999999999999999998744333333333
Q ss_pred HHHHHHh--c---------------CC---HHHHHHHHHHHHHhCCCCCCHH------H-----HH-------HHHHHHH
Q 003872 667 VIQGLGK--M---------------GR---ADLASTILDKLMKQGGGYLDVV------M-----YN-------TLINVLG 708 (790)
Q Consensus 667 li~~~~~--~---------------g~---~~~A~~~~~~~~~~~~~~p~~~------~-----~~-------~li~~~~ 708 (790)
.+.+.+. . .| ...|...|+.++++. |+.. . -+ .+..-|.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~ 186 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNSQYTTDATKRLVFLKDRLAKYELSVAEYYT 186 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333321 1 12 346778888888874 3321 0 01 2344578
Q ss_pred hcCCHHHHHHHHHHHHh--cCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 709 KAGRFDEANMLFEQMRT--SGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
+.|.+..|..-++.+.+ .+..........++.+|.+.|..++|..+...+.
T Consensus 187 ~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 187 KRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 88999999999998887 3444456677788899999999999988777664
No 176
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.10 E-value=0.25 Score=52.02 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=25.8
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003872 235 DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEE 296 (790)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 296 (790)
+....-.+..++.+.|.-++|.+.|-+... | ...++.|...+++.+|.++-+.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555556666665555554433211 1 1233445555555555555443
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.08 E-value=0.0077 Score=56.68 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=58.3
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 003872 636 FVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD-VVMYNTLINVLGKAGRFD 714 (790)
Q Consensus 636 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 714 (790)
..+.++|++|+..|.++++. .+.|.+-|.-=..+|++.|.++.|.+-.+..+.. .|. ..+|..|..+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHccCcHH
Confidence 45566677777777766665 2335555555566666677766666666666553 232 346666666666666777
Q ss_pred HHHHHHHHHHhcCCCCChHHHH
Q 003872 715 EANMLFEQMRTSGINPDVVTFN 736 (790)
Q Consensus 715 ~A~~~~~~m~~~g~~p~~~~~~ 736 (790)
+|.+.|++.++ +.|+..+|.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHH
Confidence 77666666665 466665553
No 178
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.06 E-value=0.015 Score=59.35 Aligned_cols=99 Identities=14% Similarity=0.004 Sum_probs=83.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccC
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAG 746 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g 746 (790)
...+...|+++.|++.|+++++.. +-+...|..+..+|.+.|++++|...++++... .| +...|..+..+|.+.|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 345667899999999999999874 456778888899999999999999999999985 34 5778889999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCccchhH
Q 003872 747 RLKEAHYFLKMMLDSGCTPNHVTDTT 772 (790)
Q Consensus 747 ~~~~A~~~~~~m~~~~~~p~~~t~~~ 772 (790)
++++|+..+++..+. .|+......
T Consensus 85 ~~~eA~~~~~~al~l--~P~~~~~~~ 108 (356)
T PLN03088 85 EYQTAKAALEKGASL--APGDSRFTK 108 (356)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 999999999999854 677655433
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.05 E-value=0.002 Score=49.92 Aligned_cols=81 Identities=21% Similarity=0.180 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003872 639 KGYFNQAWGVLNEMGEKFCP-TDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEAN 717 (790)
Q Consensus 639 ~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 717 (790)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.+ ..+....-.+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35666666666666655331 1333444456666666666666666666 2221 112233334455666666777776
Q ss_pred HHHHH
Q 003872 718 MLFEQ 722 (790)
Q Consensus 718 ~~~~~ 722 (790)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 180
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.04 E-value=0.033 Score=50.30 Aligned_cols=95 Identities=15% Similarity=0.040 Sum_probs=73.3
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPV--NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV 666 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 666 (790)
.....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 4566778888999999999999999999886543222 4678888899999999999999999998863 335666777
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 003872 667 VIQGLGKMGRADLASTIL 684 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~ 684 (790)
+...|...|+...+..-+
T Consensus 112 lg~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHHcCChHhHhhCH
Confidence 777888877755544433
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.93 E-value=0.24 Score=43.22 Aligned_cols=104 Identities=10% Similarity=-0.010 Sum_probs=73.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccc
Q 003872 115 VVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVV 194 (790)
Q Consensus 115 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (790)
..|+......|..+....|+..+|...|++...--+-.|+...-.+.++....+++..|...++.+.+...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p--------- 155 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP--------- 155 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC---------
Confidence 35677777778888888899999999998887644456777788888888888888888888888776432
Q ss_pred ccCCCcchHHHHHHHHHhccchHHHHHHHHHHHh
Q 003872 195 ESLPGCVACNELLVALRKSDRRSEFKQVFERLKE 228 (790)
Q Consensus 195 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (790)
...+..+...+.+.|...|.+.+|+..|+....
T Consensus 156 -a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 156 -AFRSPDGHLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred -ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 112233344455666666777667666666654
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.92 E-value=0.053 Score=58.03 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=26.4
Q ss_pred hCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHH
Q 003872 148 LGTSLSPNVYDSVLVSLVRK-----KQLGLAMSILFKLLEA 183 (790)
Q Consensus 148 ~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~ 183 (790)
...+.+...|...+++.... ++...|..+|+++++.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l 371 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS 371 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 34567888888888885443 2367889999999885
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.89 E-value=0.012 Score=55.33 Aligned_cols=99 Identities=11% Similarity=0.055 Sum_probs=83.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCC
Q 003872 598 LSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT-DIATYNVVIQGLGKMGR 676 (790)
Q Consensus 598 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~ 676 (790)
.+-+.+.+++.+|+..|...++.. +-|.+.|.--..+|.+.|.++.|++-.+..+.. .| -...|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 456778899999999999999886 667888888888999999999999999888875 23 34588999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003872 677 ADLASTILDKLMKQGGGYLDVVMYNT 702 (790)
Q Consensus 677 ~~~A~~~~~~~~~~~~~~p~~~~~~~ 702 (790)
+++|.+.|++.++ +.|+-.+|-.
T Consensus 165 ~~~A~~aykKaLe---ldP~Ne~~K~ 187 (304)
T KOG0553|consen 165 YEEAIEAYKKALE---LDPDNESYKS 187 (304)
T ss_pred HHHHHHHHHhhhc---cCCCcHHHHH
Confidence 9999999999988 5677666644
No 184
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.89 E-value=0.023 Score=48.69 Aligned_cols=94 Identities=9% Similarity=-0.125 Sum_probs=63.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 003872 379 HNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHK 458 (790)
Q Consensus 379 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 458 (790)
.-.+...+...|++++|..+|+.+....+. +..-|..|..++-..|++++|+..|.......+. ++..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 334445556677777777777777666443 4555666666666777777777777777766543 66677777777777
Q ss_pred cCCchHHHHHHHHHHh
Q 003872 459 YGRWDFTERLMKHIRD 474 (790)
Q Consensus 459 ~g~~~~a~~~~~~~~~ 474 (790)
.|+.+.|.+.|+..+.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777776655
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.86 E-value=0.0053 Score=45.16 Aligned_cols=51 Identities=27% Similarity=0.316 Sum_probs=26.0
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 673 KMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 673 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
+.|++++|.++|+++.... +-+...+..+..+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555555542 22444444555555555555555555555554
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.81 E-value=0.1 Score=43.12 Aligned_cols=93 Identities=15% Similarity=0.026 Sum_probs=51.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 003872 632 MMSSFVKKGYFNQAWGVLNEMGEKFCPTD--IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYL-DVVMYNTLINVLG 708 (790)
Q Consensus 632 li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 708 (790)
+..++-..|+.++|+.+|++....|.... ...+..+...|...|++++|..++++.....+-.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455666777777777777766655433 22344455566667777777777776665521100 1111112223455
Q ss_pred hcCCHHHHHHHHHHHH
Q 003872 709 KAGRFDEANMLFEQMR 724 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~ 724 (790)
..|+.++|...+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6677777777665544
No 187
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.75 E-value=0.26 Score=45.80 Aligned_cols=59 Identities=8% Similarity=0.142 Sum_probs=31.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003872 125 LLEPCIKSGKIDFAIEILDYMEELGT--SLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEA 183 (790)
Q Consensus 125 li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 183 (790)
....+...|++.+|.+.|+.+....+ +..+...-.++.++.+.|+++.|...++++++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444556666666666666665421 122234555555666666666666666666554
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.74 E-value=0.032 Score=50.17 Aligned_cols=82 Identities=11% Similarity=0.015 Sum_probs=55.5
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003872 235 DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVP--DLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRII 312 (790)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 312 (790)
....|..+...+...|++++|...|++.......+ ...++..+...+...|++++|...++...... +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 35566777777778888888888888887653222 23467777788888888888888888877652 3334445555
Q ss_pred HHHHH
Q 003872 313 IQGCC 317 (790)
Q Consensus 313 i~~~~ 317 (790)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
No 189
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.70 E-value=0.65 Score=46.71 Aligned_cols=176 Identities=17% Similarity=0.093 Sum_probs=117.2
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCCH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMG---VHPVNYTYNSMMSSFVK---KGYFNQAWGVLNEMGEKFCPTDI 661 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~ 661 (790)
-.++++...++-+|....+++.-.++++.+...- +.-....--.+.-++.+ .|+.++|+.++..+......+++
T Consensus 138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 4467777788888999999999999999997641 11122222234445666 89999999999997766677889
Q ss_pred HHHHHHHHHHHh---------cCCHHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhc-CCHHHHHHHH---HH-HH
Q 003872 662 ATYNVVIQGLGK---------MGRADLASTILDKLMKQGGGYLDV---VMYNTLINVLGKA-GRFDEANMLF---EQ-MR 724 (790)
Q Consensus 662 ~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~-g~~~~A~~~~---~~-m~ 724 (790)
.+|..+...|.. ....++|...|.+..+.. ||. +.+.+|+.+.+.. ..-.+..++- .. ..
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~---~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE---PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG 294 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC---ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 999888877632 224788998888877643 443 3344444433321 1122333333 22 22
Q ss_pred hcCC---CCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 725 TSGI---NPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 725 ~~g~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
+.|. ..+-..+.+++.++.-.|+.++|.+..++|.+.. +|..
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W 339 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPAW 339 (374)
T ss_pred hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccch
Confidence 2332 3355666789999999999999999999999663 4443
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.63 E-value=0.1 Score=43.14 Aligned_cols=56 Identities=18% Similarity=0.074 Sum_probs=25.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003872 127 EPCIKSGKIDFAIEILDYMEELGTSLS--PNVYDSVLVSLVRKKQLGLAMSILFKLLE 182 (790)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 182 (790)
.++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+|++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555544443322 12333444444444555555444444443
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.62 E-value=0.046 Score=53.58 Aligned_cols=135 Identities=15% Similarity=0.064 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCCCCCH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGE----KFCPT-DIATYNVVIQGLGKMGRADLASTILDKLMK----QGGGYLDV 697 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~ 697 (790)
..|..|...|.-.|+++.|+...+.-+. .|-+. -...+..+.+++.-.|+++.|.+.++.... .+.-....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4566677777778899988877664322 22111 123556677788888888888888876432 22122233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----c-CCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 698 VMYNTLINVLGKAGRFDEANMLFEQMRT----S-GINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 698 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
.+.-+|.+.|.-..++++|+.++.+=.. . ...-....+.+|..+|...|..++|+.+.+.-++.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3444566667666778888888765432 1 12224567778889999999999998888776543
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.60 E-value=0.02 Score=55.96 Aligned_cols=133 Identities=10% Similarity=0.022 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH----HhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC-CCH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIF----TDMGV-HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK----FCP-TDI 661 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~----~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~ 661 (790)
..|..|.+.|--.|+++.|+...+.- .+.|- ......+.-|..++.-.|+++.|.+.|+..... |-+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35666777777778888887665432 22221 112345667778888889999998888875432 211 123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 662 ATYNVVIQGLGKMGRADLASTILDKLMKQ----GGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 662 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
....+|.+.|.-..++++|+.++++-+.. +...-....+.+|..+|...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 35567778888888888998887764322 1112245567778888888888888888776554
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.56 E-value=0.0099 Score=43.21 Aligned_cols=54 Identities=26% Similarity=0.293 Sum_probs=28.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 705 NVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 705 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
..+...|++++|...|+++.+.. +-+...+..+..++.+.|++++|..+++++.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555566666665555532 1134555555555555566666665555554
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.54 E-value=0.011 Score=43.52 Aligned_cols=62 Identities=26% Similarity=0.365 Sum_probs=39.2
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003872 637 VKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNT 702 (790)
Q Consensus 637 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 702 (790)
.+.|++++|+.+|+++.+.. +-+...+..+..+|.+.|++++|.++++.+.... |+...|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~---~~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD---PDNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG---TTHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCHHHHHH
Confidence 35677777777777776652 3356666667777777777777777777776653 55343433
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.15 Score=48.60 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC-ChHH
Q 003872 659 TDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG---RFDEANMLFEQMRTSGINP-DVVT 734 (790)
Q Consensus 659 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p-~~~~ 734 (790)
-|...|..|...|...|+.+.|...|.+..+.. .++...+..+..++.... ...++..+|+++... .| |..+
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 345555555555555555555555555555542 233444444444433321 234455555555543 22 2334
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 735 FNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 735 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
...|...+...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 444445555555555555555555543
No 196
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.49 E-value=0.12 Score=45.03 Aligned_cols=68 Identities=26% Similarity=0.358 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCChHH
Q 003872 665 NVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT-----SGINPDVVT 734 (790)
Q Consensus 665 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 734 (790)
..++..+...|+++.|..+.+.+.... +-|...|..+|.+|...|+..+|.+.|+++.+ .|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344445555666666666666666653 34555666666666666666666666665542 366666544
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.19 Score=46.46 Aligned_cols=140 Identities=10% Similarity=0.039 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH----
Q 003872 593 MVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI---- 668 (790)
Q Consensus 593 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li---- 668 (790)
+.+.++..+.-.+.+.-...++++.++...+.++.....|++.-.+.||.+.|...|++..+..-+.|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666667777777778887776656677777778887788888888888888766553344444444333
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHH
Q 003872 669 -QGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFN 736 (790)
Q Consensus 669 -~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 736 (790)
..|.-.+++..|...++++.... ..|...-|.=.-+..-.|+..+|.+..+.|... .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 23445567777777777777664 234444443333344457788888888888763 44443333
No 198
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=1.2 Score=44.47 Aligned_cols=152 Identities=15% Similarity=0.036 Sum_probs=91.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------------
Q 003872 280 VLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQ--GCCKSYRMDDAMKIFSEMQYNGLIPDTVVY------------- 344 (790)
Q Consensus 280 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~------------- 344 (790)
++...|+.++|.++--.+.+.. . ...+...++ ++.-.++.+.|...|++....+ |+...-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~--~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-A--TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-c--chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHH
Confidence 3445566666666655555432 1 112222332 2223455666666666655432 332211
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh---HHHHH
Q 003872 345 NSLLNGMFKSRKVMEACQLFEKMVQD---GVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGIT---FSIVV 418 (790)
Q Consensus 345 ~~li~~~~~~~~~~~a~~l~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll 418 (790)
..-.+...+.|.+..|.+.|.+.+.. ++.|+...|........+.|+..+|+.-.+..... |... |..-.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra 328 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRA 328 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHH
Confidence 11123356788899999999888764 35566777777777788889999999888877765 4332 22223
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 003872 419 LQLCREGQIEEALRLVEEMEGR 440 (790)
Q Consensus 419 ~~~~~~g~~~~a~~~~~~m~~~ 440 (790)
.++...++|++|.+-++...+.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3455577888888888887665
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.40 E-value=0.62 Score=43.32 Aligned_cols=171 Identities=17% Similarity=0.182 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDMGV--HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
+..+-.....+...|++++|...|+.+..... +--....-.++.++.+.|+++.|...+++.++....-...-+-..+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 34444566777889999999999999987521 1223345567788999999999999999988763322222222222
Q ss_pred HHHHh-------------cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH
Q 003872 669 QGLGK-------------MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTF 735 (790)
Q Consensus 669 ~~~~~-------------~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 735 (790)
.+.+. .+....|...|+.++.+ |=.+.-..+|.+.+..+.+. .- ..-
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~~~---la-~~e 144 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELRNR---LA-EHE 144 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHH---HH-HHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHHHH---HH-HHH
Confidence 22221 11233455555555554 33333344444444433321 00 001
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc-chhHHHHHHHHHHhh
Q 003872 736 NTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV-TDTTLDFLGREIDRL 783 (790)
Q Consensus 736 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~l~~l~~~~~~~ 783 (790)
-.+..-|.+.|.+.-|..-++.+.+. -|+.. ....|..+.+.+.+.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l 191 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKL 191 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHh
Confidence 12445566666666666666666654 33322 234444555444443
No 200
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.39 E-value=0.018 Score=41.82 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=20.4
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 636 FVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 636 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 689 (790)
+...|++++|...|+++++.. +-+...+..+..++...|++++|...|+++++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444332 11333333334444444444444444444433
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.34 E-value=0.071 Score=46.60 Aligned_cols=74 Identities=22% Similarity=0.247 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH-----hCCCCCCccchhHH
Q 003872 699 MYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML-----DSGCTPNHVTDTTL 773 (790)
Q Consensus 699 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~t~~~l 773 (790)
....++..+...|++++|.++++++.... +.+...|..++.+|.+.|+..+|+++++++. +.|+.|+..|-.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 45567778889999999999999999852 4467899999999999999999999999875 46999998775443
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.29 E-value=0.029 Score=41.35 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=5.4
Q ss_pred hcCCHHHHHHHHHHH
Q 003872 709 KAGRFDEANMLFEQM 723 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m 723 (790)
..|++++|+..|++.
T Consensus 15 ~~~~~~~A~~~~~~a 29 (69)
T PF13414_consen 15 QQGDYEEAIEYFEKA 29 (69)
T ss_dssp HTTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 333333333333333
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.24 E-value=1.5 Score=46.08 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003872 274 YNSLIQVLCVVGKV--KDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSE 331 (790)
Q Consensus 274 ~~~ll~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 331 (790)
++..=.+|.+..+. -+..--+++++++|-.|+.... ...++-.|++.+|-++|.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH
Confidence 44444555554442 3334445666777766665432 3344555667777666654
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.23 E-value=0.093 Score=50.57 Aligned_cols=99 Identities=13% Similarity=0.076 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 003872 628 TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD--IATYNVVIQGLGKMGRADLASTILDKLMKQGGGY-LDVVMYNTLI 704 (790)
Q Consensus 628 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~li 704 (790)
.|...+..+.+.|++++|+..|+.+++...... ...+..+...|...|+++.|...|+.+++..+.. .....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444555677777777777666532111 2345555666666667777766666666553111 1122333344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 003872 705 NVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 705 ~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
.++...|+.++|.++|+++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666653
No 205
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.22 E-value=0.055 Score=45.15 Aligned_cols=97 Identities=14% Similarity=0.152 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCC
Q 003872 153 SPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEF 232 (790)
Q Consensus 153 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (790)
|..++..++.++++.|+++....+++.............. . .......
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~----------------------~----------~~~~spl 48 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEG----------------------D----------YPPSSPL 48 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccC----------------------c----------cCCCCCC
Confidence 3456777777777777777777777665543221110000 0 1111445
Q ss_pred CCchhhHHHHHHHHhccCChHHHHHHHHHHHHC-CCCCCHhHHHHHHHHH
Q 003872 233 EFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK-GLVPDLHTYNSLIQVL 281 (790)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~ 281 (790)
.|+..+..+++.+|+..|++..|.++++...+. +++.+..+|..|+.-.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 556666666666666666666666665555443 4444555555555443
No 206
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.21 E-value=0.028 Score=41.40 Aligned_cols=60 Identities=20% Similarity=0.117 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG-RFDEANMLFEQMR 724 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 724 (790)
+|..+...+...|++++|+..|++.++.. +-+...|..+..+|...| ++++|++.+++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 33344444444444444444444444432 223333444444444444 3444444444433
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.18 E-value=1.5 Score=43.30 Aligned_cols=199 Identities=11% Similarity=0.033 Sum_probs=106.0
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHCC-CCCCHhH--HHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHH-
Q 003872 236 IYGYNICIHAFGCWGDLHTSLRLFKEMKEKG-LVPDLHT--YNSLIQVLCV---VGKVKDALIVWEELKGSGHEPNEFT- 308 (790)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~--~~~ll~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~- 308 (790)
...+...+...+..|+++.|+++++.-++.. +.++..- -..|+.+-.. .-+...|...-.+..+. .||..-
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPa 265 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPA 265 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchH
Confidence 3455566666666666666666666554432 2233221 1122211111 22345555554444433 455332
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Q 003872 309 HRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQD-GVRT-SCWTHNILIDGL 386 (790)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~-~~~~-~~~~~~~li~~~ 386 (790)
-..-..++.+.|+..++-.+++.+-+....|+ ++. +..+.+.|+. ++.-++...+. .++| +......+..+-
T Consensus 266 av~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aA 339 (531)
T COG3898 266 AVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAA 339 (531)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 22334677788888888888888887744343 332 2223444542 22222222210 1222 344555666777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCcc
Q 003872 387 FRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCR-EGQIEEALRLVEEMEGRGFVV 444 (790)
Q Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~~~~~ 444 (790)
...|++..|..--+..... .|....|..|.+.-.. .|+-.++...+.+..+.--.|
T Consensus 340 lda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 340 LDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 7778887777666655544 4566667666665544 488888888888877653333
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.49 Score=45.24 Aligned_cols=129 Identities=11% Similarity=0.044 Sum_probs=97.6
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC---CHHHHHH
Q 003872 606 KLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMG---RADLAST 682 (790)
Q Consensus 606 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~ 682 (790)
.++....-++.-...+ +-|...|-.|...|...|+++.|..-|.+..+. -++++..+..+..++.... +..++..
T Consensus 137 ~~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 3444444454444444 778999999999999999999999999999987 3457777777777654432 4678999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 003872 683 ILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIE 740 (790)
Q Consensus 683 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 740 (790)
+|++++... +-|..+..-|...+...|++.+|...|+.|.+. .|....+..+|.
T Consensus 215 ll~~al~~D--~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 215 LLRQALALD--PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 999999874 345666666777888999999999999999985 444444555554
No 209
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=2.7 Score=45.40 Aligned_cols=322 Identities=12% Similarity=0.101 Sum_probs=171.7
Q ss_pred hCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhcc
Q 003872 112 EDDVVVDSETFK-----LLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACND 186 (790)
Q Consensus 112 ~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (790)
+-|++.+..-|. .++..+...+.+..|+++-..+...-.. ...+|.....-+.+..+... ..+++.+.+.-..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d-~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMD-EEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccc-hHHHHHHHHHhcc
Confidence 345666655554 4567777888888998888776542111 25677777777777643211 2233333332100
Q ss_pred CCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCC---CCchhhHHHHHHHHhccCChHHHHHHHHHHH
Q 003872 187 NTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEF---EFDIYGYNICIHAFGCWGDLHTSLRLFKEMK 263 (790)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 263 (790)
.......|..+.+.....|+.+-|..+++.=.....- -.+..-+...+.-+.+.|+.+....++-.+.
T Consensus 503 ---------~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 503 ---------KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred ---------cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 1234456777777778888888888776643321100 0122234444555555666666666655554
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHH----HCCCC
Q 003872 264 EKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIF-SEMQ----YNGLI 338 (790)
Q Consensus 264 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~-~~m~----~~~~~ 338 (790)
.. .+...|... ..+...|..+|.+..+.. +.. .+-..|-...+...+-.+. +... ..|..
T Consensus 574 ~~---~~~s~l~~~------l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~ 638 (829)
T KOG2280|consen 574 NK---LNRSSLFMT------LRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRI 638 (829)
T ss_pred HH---HHHHHHHHH------HHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccc
Confidence 43 111111111 123345556665544321 111 1122232323332222111 1100 12223
Q ss_pred CCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003872 339 PDTVVYNSLLNGMFKSRK----------VMEACQLFEKMVQ-DGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGK 407 (790)
Q Consensus 339 p~~~~~~~li~~~~~~~~----------~~~a~~l~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 407 (790)
|+.. ...+.+.+... ..+-+++.+.+.. .|......+.+--+.-+...|+..+|.++-.+..
T Consensus 639 ~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---- 711 (829)
T KOG2280|consen 639 PALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---- 711 (829)
T ss_pred hhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----
Confidence 3332 23333333332 1122223333322 1323334455666777778888888888766653
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 003872 408 FVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHI 472 (790)
Q Consensus 408 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (790)
.||-..|..=+.++...+++++.+++-+.+. .+.-|...+.+|.+.|+.++|...+.+.
T Consensus 712 ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 712 IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 3588888888899999999998777665543 2455777888999999999988877654
No 210
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.04 E-value=0.17 Score=42.19 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 657 CPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLG 708 (790)
Q Consensus 657 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~ 708 (790)
..|+..+..+++.+|+..|++..|+++++...+..+++.+..+|..|+.-+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666555555666666555443
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.01 E-value=0.2 Score=48.38 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=80.2
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCCHHHHHH
Q 003872 84 ACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVV--DSETFKLLLEPCIKSGKIDFAIEILDYMEELGT--SLSPNVYDS 159 (790)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 159 (790)
...|...+..+.+.|++++|...|+.+....+.- .+.++..+...|...|++++|...|+.+.+... +..+..+-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3457777766677899999999999999875321 146778899999999999999999999997632 223556667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHH
Q 003872 160 VLVSLVRKKQLGLAMSILFKLLEA 183 (790)
Q Consensus 160 ll~~~~~~~~~~~a~~~~~~~~~~ 183 (790)
+...+...|+.+.|..+|+++++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888999999999999999885
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.90 E-value=0.038 Score=41.91 Aligned_cols=61 Identities=34% Similarity=0.457 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCC-hHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 699 MYNTLINVLGKAGRFDEANMLFEQMRTS----GI-NPD-VVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 699 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
+|+.+..+|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555566666666665555431 11 111 3455566666666666666666666554
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=1.5 Score=40.79 Aligned_cols=30 Identities=7% Similarity=0.107 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhhCC
Q 003872 85 CTYSHIFRTVCRAGFLEEVPSLLNSMQEDD 114 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~ 114 (790)
..|..-+.++.+.+.+++|..-++.+...+
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD 99 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLD 99 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCC
Confidence 456677888888888988888777766543
No 214
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.81 E-value=2.5 Score=42.80 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=35.1
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003872 637 VKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNT 702 (790)
Q Consensus 637 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 702 (790)
...|++.++...-..+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..+++.
T Consensus 473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~------LP~n~~~~ds 530 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK------LPPNERMRDS 530 (549)
T ss_pred HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh------CCCchhhHHH
Confidence 445666666655555544 456666666666666666667777666654 4556555553
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=95.80 E-value=0.12 Score=44.53 Aligned_cols=101 Identities=14% Similarity=0.018 Sum_probs=69.0
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
.......-....-+-..|++++|..+|.-+.-.+ .-+..-|..|...+-..+++++|+..|......+. -|+..+-..
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~a 111 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFT 111 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchH
Confidence 3344444455566667788888888888776655 34555566666667777888888888887655432 345555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh
Q 003872 668 IQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
..+|...|+.+.|+..|+..+.+
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhC
Confidence 77778888888888888777663
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.75 E-value=1.6 Score=44.09 Aligned_cols=101 Identities=12% Similarity=0.012 Sum_probs=65.9
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHhCCCCCHH
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDD---VVVDSETFKLLLEPCIK---SGKIDFAIEILDYMEELGTSLSPN 155 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 155 (790)
.++.+...++-.|....+++.++++++.+.... +.-....--...-++-+ .|+.++|++++..+......++++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 344555566667888889999999999988752 11122222334445556 789999999998866666678888
Q ss_pred HHHHHHHHHHhc---------CChhHHHHHHHHHHH
Q 003872 156 VYDSVLVSLVRK---------KQLGLAMSILFKLLE 182 (790)
Q Consensus 156 ~~~~ll~~~~~~---------~~~~~a~~~~~~~~~ 182 (790)
+|..+.+.|-.. ...++|...+.+..+
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 888888776431 124555555555444
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.68 E-value=0.04 Score=41.77 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC---C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQG---G-GYLD-VVMYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
+++.+...|...|++++|+..|++.++.. | -.|+ ..+++.+..+|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555566665555555554321 0 0111 3455556666666666666666666554
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.64 E-value=0.055 Score=40.35 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=21.1
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 636 FVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 636 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 689 (790)
|.+.+++++|..+++.+...+ +.+...+......+.+.|++++|.+.++...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444444444444431 11333333333344444444444444444443
No 219
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=1.7 Score=40.00 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=56.5
Q ss_pred CCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHH
Q 003872 78 PIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVY 157 (790)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 157 (790)
|++.--...|.....+|...++|++|...+....+.. .-+...|. ....++.|.-+.+++.+.. --...|
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslfh-------AAKayEqaamLake~~kls--Evvdl~ 94 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLY 94 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHH
Confidence 4444456778888888888899999988887766421 11222222 1233455555555555431 223346
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 003872 158 DSVLVSLVRKKQLGLAMSILFKLLE 182 (790)
Q Consensus 158 ~~ll~~~~~~~~~~~a~~~~~~~~~ 182 (790)
+....+|..+|.++.|-..+++.-+
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHH
Confidence 6666777777877777666665533
No 220
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=2.9 Score=41.83 Aligned_cols=87 Identities=17% Similarity=0.108 Sum_probs=56.5
Q ss_pred HHhcCCHHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHhc
Q 003872 636 FVKKGYFNQAWGVLNEMGEK---FCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTL--INVLGKA 710 (790)
Q Consensus 636 ~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l--i~~~~~~ 710 (790)
..+.|.+..|.+.|.+.+.. ..+|+...|.....+..+.|+..+|+.-.+...+.. +...+.-+ ..++.-.
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD----~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID----SSYIKALLRRANCHLAL 334 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC----HHHHHHHHHHHHHHHHH
Confidence 46778888888888888765 334555566666667778888888888887766532 12222222 2233445
Q ss_pred CCHHHHHHHHHHHHhc
Q 003872 711 GRFDEANMLFEQMRTS 726 (790)
Q Consensus 711 g~~~~A~~~~~~m~~~ 726 (790)
++|++|.+-|++..+.
T Consensus 335 e~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7788888888877653
No 221
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.57 E-value=2.9 Score=41.78 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=71.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 003872 595 NTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKM 674 (790)
Q Consensus 595 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 674 (790)
+..|.-+...|....|.++..++. .|+..-|...+.+++..+++++-..+... +-.++-|..++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 344555666777777777766664 57777788888888888888776665432 12346677777788888
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 675 GRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQM 723 (790)
Q Consensus 675 g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 723 (790)
|+..+|..++.++ + +..-+..|.+.|++.+|.+.-.+.
T Consensus 251 ~~~~eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 8887777777652 1 134456677778887777764444
No 222
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.56 E-value=2.7 Score=41.37 Aligned_cols=165 Identities=10% Similarity=0.085 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 591 IDMVNTFLSIFLAKGKLN---LACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
..++..++.+|...+..+ +|..+++.+.... +-.+..+..-+..+.+.++.+++.+.+.+|+.. +.-....+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 445677888888877544 5666666665442 233455556677777789999999999999987 22233455555
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHHhCCCCCCHHHHH--HH---HHHHHhcCC------HHHHHHHHHHHHh-cCCCCCh
Q 003872 668 IQGL---GKMGRADLASTILDKLMKQGGGYLDVVMYN--TL---INVLGKAGR------FDEANMLFEQMRT-SGINPDV 732 (790)
Q Consensus 668 i~~~---~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~--~l---i~~~~~~g~------~~~A~~~~~~m~~-~g~~p~~ 732 (790)
+..+ .. .....|...++.++... +.|....|- .+ +......++ ++....+++...+ .+-+.+.
T Consensus 162 l~~i~~l~~-~~~~~a~~~ld~~l~~r-~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 162 LHHIKQLAE-KSPELAAFCLDYLLLNR-FKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHh-hCcHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 5554 33 33456667776666655 555543111 11 111222222 4555555664333 2333343
Q ss_pred HHHHHH-------HHHHhccCCHHHHHHHHHHHH
Q 003872 733 VTFNTL-------IEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 733 ~~~~~l-------~~~~~~~g~~~~A~~~~~~m~ 759 (790)
.+-.++ +..+.+.+++++|.++++-..
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 332222 345777899999999998543
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.33 E-value=1.4 Score=47.05 Aligned_cols=191 Identities=16% Similarity=0.093 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChh------hHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHH
Q 003872 593 MVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNY------TYNSMMSSFVK----KGYFNQAWGVLNEMGEKFCPTDIA 662 (790)
Q Consensus 593 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~ 662 (790)
.+..++....=.|+-+.+++.+....+.+--..+. .|...+..++. ..+.+.|.+++..+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 34566677777789999999888876543122222 23333333333 45678899999999987 35655
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 003872 663 TYNVV-IQGLGKMGRADLASTILDKLMKQGGG--YLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLI 739 (790)
Q Consensus 663 ~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 739 (790)
.|... .+.+...|++++|.+.|+++...... +.....+--+...+...++|++|...|..+.+.. .-+..+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 55443 44567889999999999976642101 1233444556677888899999999999999742 11333343333
Q ss_pred -HHHhccCCH-------HHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHhhhhh
Q 003872 740 -EVNGKAGRL-------KEAHYFLKMMLDSGCTPNHVTDTTLDFLGREIDRLKDQ 786 (790)
Q Consensus 740 -~~~~~~g~~-------~~A~~~~~~m~~~~~~p~~~t~~~l~~l~~~~~~~~~~ 786 (790)
.++...|+. ++|.+++.+.....-.--..+...=.+..|...+++.+
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~ 401 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQ 401 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhc
Confidence 344556777 88999998876321110001112224456666666554
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.84 Score=43.51 Aligned_cols=50 Identities=26% Similarity=0.259 Sum_probs=22.7
Q ss_pred hcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003872 96 RAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYME 146 (790)
Q Consensus 96 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 146 (790)
..|++.+|..+|......... +......++++|...|+++.|..++..+.
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344444444444444443322 23344444444555555555555554443
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.23 E-value=0.53 Score=48.04 Aligned_cols=66 Identities=14% Similarity=0.033 Sum_probs=48.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003872 623 HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDI----ATYNVVIQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 623 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
+.+...|+.+..+|.+.|++++|+..|++.++. .|+. ..|..+..+|...|+.++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556667777777888888888888888877775 3442 34777777778888888888888777764
No 226
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.20 E-value=1.5 Score=36.14 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=34.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP 658 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 658 (790)
.-+..+.+.|+-++-.++...+.+.+ ++++...-.+..+|.+.|+..++.+++.++-+.|++
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455566666666666666665433 566666666666777777777777777766666543
No 227
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.18 E-value=4.1 Score=41.21 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDMG-VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ 669 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 669 (790)
..+|-.+++...+..-++.|..+|-+..+.| +.+++.+++++|..++. |++..|..+|+--... .+.+..--+-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 3456677888888888999999999999888 67888889999887664 7788899999865554 2333333355666
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 670 GLGKMGRADLASTILDKLMKQGGGYLD--VVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
-+...++-+.|..+|+..+.+ +..+ ...|..+|.--..-|+...|..+=++|..
T Consensus 475 fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 778889999999999977766 4444 56889999888888999888888777776
No 228
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.08 E-value=2.2 Score=37.52 Aligned_cols=31 Identities=6% Similarity=-0.019 Sum_probs=15.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003872 293 VWEELKGSGHEPNEFTHRIIIQGCCKSYRMD 323 (790)
Q Consensus 293 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~ 323 (790)
.++.+.+.+++|+...+..++..+.+.|++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3344444455555555555555555555433
No 229
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.08 E-value=4 Score=40.52 Aligned_cols=126 Identities=14% Similarity=0.121 Sum_probs=72.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 003872 633 MSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYL-DVVMYNTLINVLGKAG 711 (790)
Q Consensus 633 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 711 (790)
..++.+.|+..++-.+++.+-+....|++ +. +..+.+.|+. ++.-++.......++| +..+..++..+-...|
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 34577777888888888877776444433 22 2233444542 2222222221111333 4555666667777777
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCCC
Q 003872 712 RFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKA-GRLKEAHYFLKMMLDSGCTPN 766 (790)
Q Consensus 712 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p~ 766 (790)
++..|+.--+.... ..|....|..|.+.-... |+-.++..++-+..+.--.|+
T Consensus 344 e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 344 EFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred chHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 77777766665554 467777777776655444 777777777777765544443
No 230
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.04 E-value=0.13 Score=38.36 Aligned_cols=55 Identities=18% Similarity=0.079 Sum_probs=29.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHh
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKE 228 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (790)
..|.+.+++++|..+++.++.. .+.+...+.....++.+.|++++|.+.|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL------------DPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh------------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455556666666666665554 233444455555555555555555555555554
No 231
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.91 E-value=2.3 Score=44.86 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCcc--hHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003872 87 YSHIFRTVCRAGFLE--EVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDY 144 (790)
Q Consensus 87 ~~~l~~~~~~~~~~~--~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 144 (790)
++..=.+|.+-++.. +...-++++..+|-.|+... +...|+..|++.+|.++|.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 344444454444332 33444566777776676643 34556667777777777753
No 232
>PRK15331 chaperone protein SicA; Provisional
Probab=94.75 E-value=1 Score=39.09 Aligned_cols=89 Identities=11% Similarity=-0.081 Sum_probs=58.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCch
Q 003872 384 DGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWD 463 (790)
Q Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 463 (790)
.-+...|++++|..+|+-+...++. +..-|..|..++-..+++++|...|......+.. |+..+-....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHH
Confidence 3345677777777777777665443 4555566666666677777777777766554432 4444555667777777777
Q ss_pred HHHHHHHHHHh
Q 003872 464 FTERLMKHIRD 474 (790)
Q Consensus 464 ~a~~~~~~~~~ 474 (790)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777777666
No 233
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=8.5 Score=42.41 Aligned_cols=176 Identities=18% Similarity=0.140 Sum_probs=107.8
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHH----HHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 003872 202 ACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNIC----IHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSL 277 (790)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 277 (790)
....-+..+.+...++-|+.+-..- +. +..+...+ ...+.+.|++++|...|-+-... +.| ..+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~----~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ----HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV 403 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc----CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence 4455677777788888887765542 22 33333333 33445778999888777665432 122 234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCC
Q 003872 278 IQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLI-PDTVVYNSLLNGMFKSRK 356 (790)
Q Consensus 278 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~ 356 (790)
+.-|....++..-..+++.+.+.|+ .+...-+.|+.+|.+.++.++..++.+... .|.. -| ....+..+.+.+-
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~sny 478 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNY 478 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhCh
Confidence 5556666677777778888888874 455666788889999888887776665544 2221 12 2344555666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003872 357 VMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDL 402 (790)
Q Consensus 357 ~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 402 (790)
.++|..+-..... +......++. ..+++++|++++..+
T Consensus 479 l~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 6666665554332 3344444433 457888888887665
No 234
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.60 E-value=3 Score=41.14 Aligned_cols=132 Identities=11% Similarity=0.112 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC---
Q 003872 644 QAWGVLNEMGEKFCPTDIATYNVVIQGLGK--MG----RADLASTILDKLMKQGGG--YLDVVMYNTLINVLGKAGR--- 712 (790)
Q Consensus 644 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~--- 712 (790)
+...+++.|.+.|++-+..+|-+..-.... .. ...+|.++++.|.+..++ .++..++.+|+.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 345566666666666665555442222211 11 245666777776665422 2444555555433 2222
Q ss_pred -HHHHHHHHHHHHhcCCCCChH-HHHHHHHHHhcc-CC--HHHHHHHHHHHHhCCCCCCccchhHHHHHH
Q 003872 713 -FDEANMLFEQMRTSGINPDVV-TFNTLIEVNGKA-GR--LKEAHYFLKMMLDSGCTPNHVTDTTLDFLG 777 (790)
Q Consensus 713 -~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~-g~--~~~A~~~~~~m~~~~~~p~~~t~~~l~~l~ 777 (790)
.+++..+|+.+.+.|+..+.. -+-+-+-++... .. ...+.++++.+.+.|+++....|.+|..|+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 244556666666666655432 222222222221 11 335666677777777776666666555543
No 235
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.50 E-value=2.8 Score=36.85 Aligned_cols=138 Identities=17% Similarity=0.210 Sum_probs=94.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003872 326 MKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK 405 (790)
Q Consensus 326 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 405 (790)
.+++..+.+.+++|+...+..+++.+.+.|.+.... .+...++-+|.......+-.+. +....+.++--+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 456677778899999999999999999999865544 4455566666665554443332 2333444444444443
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 003872 406 GKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNL 477 (790)
Q Consensus 406 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (790)
=...+..++..+...|++-+|.++.+..... +...-..++.+..+.+|...-..+++-..+.+.
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~ 151 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERNL 151 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhH
Confidence 1113566788889999999999999876433 223345678888888888888888887777543
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.43 E-value=1.3 Score=46.50 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=92.1
Q ss_pred HHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCh
Q 003872 91 FRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQL 170 (790)
Q Consensus 91 ~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 170 (790)
.+...-+++++.+.++.+.-.-. ...+......+++-+.+.|.++.|+++-.. + ..-+....+.|++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCH
Confidence 44555667888876666411111 112355677788888888888888876533 2 1234556677888
Q ss_pred hHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccC
Q 003872 171 GLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWG 250 (790)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 250 (790)
+.|.++.+ ...+...|..|.....+.|+++-|++.|.+... +..|+-.|...|
T Consensus 335 ~~A~~~a~-----------------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g 387 (443)
T PF04053_consen 335 DIALEIAK-----------------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTG 387 (443)
T ss_dssp HHHHHHCC-----------------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT
T ss_pred HHHHHHHH-----------------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhC
Confidence 88776543 234556777777777777777777777776543 556666666777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 251 DLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEEL 297 (790)
Q Consensus 251 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 297 (790)
+.+...++.+.....|- ++....++...|++++..+++.+.
T Consensus 388 ~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 388 DREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 77777777666665532 444555555567777666665543
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.22 E-value=1.5 Score=45.97 Aligned_cols=158 Identities=11% Similarity=0.058 Sum_probs=96.1
Q ss_pred HHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 003872 209 ALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVK 288 (790)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 288 (790)
...-.++++++.++.+.-.--..++ ..-.+.+++.+-+.|..+.|+++...-.. -.....+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHH
Confidence 3455677777655554111001222 33467788888888888888876554332 245666788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 289 DALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMV 368 (790)
Q Consensus 289 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~ 368 (790)
.|.++.++. .+...|..|.....+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 887765443 3667888888888888888888888876543 5566666777888887777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003872 369 QDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCD 401 (790)
Q Consensus 369 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 401 (790)
..|- ++....++.-.|+.++..+++.+
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6652 45555666666777777776644
No 238
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.22 E-value=1.6 Score=37.76 Aligned_cols=19 Identities=26% Similarity=0.083 Sum_probs=8.8
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003872 671 LGKMGRADLASTILDKLMK 689 (790)
Q Consensus 671 ~~~~g~~~~A~~~~~~~~~ 689 (790)
+...|++.+|..+|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3344445555555544433
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.16 E-value=0.7 Score=43.61 Aligned_cols=99 Identities=11% Similarity=0.043 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCch
Q 003872 157 YDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDI 236 (790)
Q Consensus 157 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (790)
|+.-+.. .+.|++..|...|...++.... ..-....+..|...+...|++++|..+|..+.+..+-.|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~---------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPN---------STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCC---------CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC
Confidence 4444433 3445566666666666654221 11122344455566666666666666666665543333332
Q ss_pred -hhHHHHHHHHhccCChHHHHHHHHHHHHC
Q 003872 237 -YGYNICIHAFGCWGDLHTSLRLFKEMKEK 265 (790)
Q Consensus 237 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 265 (790)
..+-.|.....+.|+.++|...|+++.+.
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44445555555556666666666655554
No 240
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.83 E-value=0.33 Score=49.47 Aligned_cols=102 Identities=11% Similarity=-0.040 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH
Q 003872 658 PTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDV----VMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVV 733 (790)
Q Consensus 658 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 733 (790)
+.+...++.+..+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|++++|...+++..+.+ .|
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~---Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~--- 144 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN---PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL--- 144 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---
Confidence 4567889999999999999999999999999864 553 458899999999999999999999999852 11
Q ss_pred HHHHHHH--HHhccCCHHHHHHHHHHHHhCCCCCC
Q 003872 734 TFNTLIE--VNGKAGRLKEAHYFLKMMLDSGCTPN 766 (790)
Q Consensus 734 ~~~~l~~--~~~~~g~~~~A~~~~~~m~~~~~~p~ 766 (790)
.|..+.. .+..-.+.++..++++.+.+.|..-.
T Consensus 145 ~f~~i~~DpdL~plR~~pef~eLlee~rk~G~~~g 179 (453)
T PLN03098 145 KFSTILNDPDLAPFRASPEFKELQEEARKGGEDIG 179 (453)
T ss_pred hHHHHHhCcchhhhcccHHHHHHHHHHHHhCCccC
Confidence 2322211 11122344577888888887776444
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=6.6 Score=37.71 Aligned_cols=145 Identities=15% Similarity=0.067 Sum_probs=79.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHH
Q 003872 161 LVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYN 240 (790)
Q Consensus 161 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (790)
.......|++..|...|...+.. .+.+...-..++.+|...|+.+.|..++..+.... -........
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~------------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~ 207 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA------------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQ 207 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh------------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHH
Confidence 34556778888888888887775 33344555667777778888888888777766421 111111122
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhc
Q 003872 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSG-HEPNEFTHRIIIQGCCKS 319 (790)
Q Consensus 241 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~ 319 (790)
.-|..+.+.....+...+-.+.... +-|...-..+...+...|+.+.|.+.+-.+.+.. -.-|...-..++..+.-.
T Consensus 208 a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~ 285 (304)
T COG3118 208 AQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAF 285 (304)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhc
Confidence 2334444444444444444444432 1144555555666666777777766665554331 123334444555555444
Q ss_pred C
Q 003872 320 Y 320 (790)
Q Consensus 320 ~ 320 (790)
|
T Consensus 286 g 286 (304)
T COG3118 286 G 286 (304)
T ss_pred C
Confidence 4
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.79 E-value=4.4 Score=43.25 Aligned_cols=116 Identities=16% Similarity=0.055 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHHcCCHHHHH
Q 003872 356 KVMEACQLFEKMVQDGVRTSCWTHNIL-IDGLFRNGRAEAAYTLFCDLKKKG---KFVDGITFSIVVLQLCREGQIEEAL 431 (790)
Q Consensus 356 ~~~~a~~l~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~ 431 (790)
+.+.|.++++.+.+. -|+...|... .+.+...|++++|++.|+...... .+.....+--+.-.+.-..++++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 344555555555443 2333333222 223334455555555555433210 1112233334444455555566666
Q ss_pred HHHHHHHhCCCccCHHHHHHHHH-HHHhcCCc-------hHHHHHHHHHHh
Q 003872 432 RLVEEMEGRGFVVDLVTISSLLI-GFHKYGRW-------DFTERLMKHIRD 474 (790)
Q Consensus 432 ~~~~~m~~~~~~~~~~~~~~l~~-~~~~~g~~-------~~a~~~~~~~~~ 474 (790)
..|..+.+..-- +..+|..+.. ++...|+. ++|..+|.++..
T Consensus 326 ~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 666555554222 2223332222 22344444 555555555543
No 243
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.78 E-value=1 Score=42.32 Aligned_cols=30 Identities=13% Similarity=0.006 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003872 287 VKDALIVWEELKGSGHEPNEFTHRIIIQGC 316 (790)
Q Consensus 287 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 316 (790)
++-....++.|.+.|+..|..+|+.|+..+
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~Llnvf 117 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVF 117 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhC
Confidence 344444445555555555555555555443
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.65 E-value=2.2 Score=36.77 Aligned_cols=42 Identities=10% Similarity=0.130 Sum_probs=19.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVK 638 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 638 (790)
.++..+.+.+.......+++.+...+ ..+....+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444444555555555544443 2344444445544444
No 245
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.58 E-value=8.1 Score=38.02 Aligned_cols=124 Identities=14% Similarity=0.116 Sum_probs=63.1
Q ss_pred HhccchHHHHHHHHHHHhcC-CCCCch------hhHHHHHHHHhccCChHHHHHHHHHHHHC--------CCCCCH----
Q 003872 211 RKSDRRSEFKQVFERLKEQK-EFEFDI------YGYNICIHAFGCWGDLHTSLRLFKEMKEK--------GLVPDL---- 271 (790)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~-~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~p~~---- 271 (790)
.+.|+.+.|..++.+..... ...|+. ..|+.-...+.+..+++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888887643 334432 12333333333332777776666654332 112222
Q ss_pred -hHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 272 -HTYNSLIQVLCVVGKV---KDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 272 -~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
.++..++.+|...+.. ++|..+++.+.... +-....+..-++.+.+.++.+.+.+++.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 2344445555555543 34444444443331 112334444455555566666666666666654
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=1.8 Score=41.81 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=110.9
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHH----HHHHHHHHhcCCHH
Q 003872 603 AKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATY----NVVIQGLGKMGRAD 678 (790)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~li~~~~~~g~~~ 678 (790)
..|.+.+|...++++.+.- +.|...+.-.=++|.-.|+...-...++++.-. ..+|...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3577788888888887653 778888888888999999999888888888754 23344333 34445567889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCChHHHHHHHHHHhccCCHHHHHHHH
Q 003872 679 LASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS---GINPDVVTFNTLIEVNGKAGRLKEAHYFL 755 (790)
Q Consensus 679 ~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 755 (790)
+|++.-++..+.+ +.|...-.+....+-..|++.++.++..+-... +.-.-...|....-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999999988764 557777788888888899999999986654431 11111233445555666778999999999
Q ss_pred HHHH
Q 003872 756 KMML 759 (790)
Q Consensus 756 ~~m~ 759 (790)
+.=.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8643
No 247
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.26 E-value=1.5 Score=41.21 Aligned_cols=51 Identities=18% Similarity=0.140 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003872 303 EPNEFTHRIIIQGCCK-----SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFK 353 (790)
Q Consensus 303 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 353 (790)
+.|..+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 4455556555555542 34566666778889999999999999999887644
No 248
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.23 E-value=7.7 Score=38.18 Aligned_cols=131 Identities=16% Similarity=0.046 Sum_probs=84.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCCCHH---
Q 003872 595 NTFLSIFLAKGKLNLACKLFEIFTDMG-----VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK----FCPTDIA--- 662 (790)
Q Consensus 595 ~~li~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~--- 662 (790)
.++..+....+.++++++.|+...... ......+|..|...|....|+++|.-+..+..+. ++..-..
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 345566666677888888887664321 1223467888999999999999988777665432 3221111
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 663 --TYNVVIQGLGKMGRADLASTILDKLMKQ----GGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 663 --~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
....+.-++...|.+..|.+..++..+. |.-..-......+.+.|-..|+.+.|+.-|++...
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2233445677778888888877776543 31122334455678888899999999988887653
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.12 E-value=1.6 Score=41.29 Aligned_cols=59 Identities=22% Similarity=0.145 Sum_probs=23.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 667 VIQGLGKMGRADLASTILDKLMKQGGGYLD-VVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
|..++...|+++.|..+|..+.+..+-.|- +..+--|..+..+.|+.++|..+|++..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333444444444444444444433211111 12333333334444444444444444443
No 250
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=1.6 Score=43.59 Aligned_cols=123 Identities=15% Similarity=0.079 Sum_probs=64.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH
Q 003872 633 MSSFVKKGYFNQAWGVLNEMGEK-----FCPT---------DIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVV 698 (790)
Q Consensus 633 i~~~~~~g~~~~A~~~~~~m~~~-----~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 698 (790)
.+.|.+.|++..|..-|+++.+. +..+ -..+++.+.-+|.+.+++..|++..++.++.. ++|+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~K 292 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVK 292 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchh
Confidence 45677777888887777775543 1111 12234445555666666666666666666552 44555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH-HHHHHHHhccCCH-HHHHHHHHHHH
Q 003872 699 MYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTF-NTLIEVNGKAGRL-KEAHYFLKMML 759 (790)
Q Consensus 699 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~-~~A~~~~~~m~ 759 (790)
..--=..+|...|+++.|+..|+++++ +.|+.... +-|+..-.+.... +...++|..|.
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 544455556666666666666666665 24443333 2333222222222 22355555554
No 251
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.01 E-value=8.1 Score=36.38 Aligned_cols=74 Identities=19% Similarity=0.167 Sum_probs=45.0
Q ss_pred HHHHhcCCcchHHHHHHHhhhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003872 92 RTVCRAGFLEEVPSLLNSMQEDDV--VVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLV 165 (790)
Q Consensus 92 ~~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 165 (790)
....+.|++++|.+.|+.+....+ +-...+...++-++-+.++++.|+...++..+..+......|-.-|.+++
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 344556777777777777766532 22345566666677777777777777777776643222233555555554
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.82 E-value=3.2 Score=35.17 Aligned_cols=84 Identities=14% Similarity=0.110 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGV--HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
++..+-.-.....+.|++++|.+.|+.+...-. +-....--.|+.+|.+.+++++|...+++.++....--.+-|-..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 344444455566778889999988888876521 223344556778888899999999888888887543323344444
Q ss_pred HHHHHh
Q 003872 668 IQGLGK 673 (790)
Q Consensus 668 i~~~~~ 673 (790)
+.|++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 444443
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.73 E-value=2.7 Score=34.50 Aligned_cols=89 Identities=11% Similarity=-0.016 Sum_probs=50.5
Q ss_pred HHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHhcCC
Q 003872 93 TVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPN---VYDSVLVSLVRKKQ 169 (790)
Q Consensus 93 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~ 169 (790)
+++..|+.+.|++.|......- +-....||.-.+++.-.|+.++|++-+++.++...+.... .|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4556677777777776666653 2356667777777777777777777776666652222221 13333334444555
Q ss_pred hhHHHHHHHHHHH
Q 003872 170 LGLAMSILFKLLE 182 (790)
Q Consensus 170 ~~~a~~~~~~~~~ 182 (790)
.+.|..-|...-+
T Consensus 131 dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 131 DDAARADFEAAAQ 143 (175)
T ss_pred hHHHHHhHHHHHH
Confidence 5555555555444
No 254
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.73 E-value=5 Score=33.20 Aligned_cols=62 Identities=21% Similarity=0.161 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003872 274 YNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNG 336 (790)
Q Consensus 274 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 336 (790)
....++.+...|+-+...+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444445555555555555544322 4444444444455555555555555555544444
No 255
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.72 E-value=5.9 Score=34.06 Aligned_cols=15 Identities=7% Similarity=0.054 Sum_probs=5.9
Q ss_pred CChHHHHHHHHHHHH
Q 003872 250 GDLHTSLRLFKEMKE 264 (790)
Q Consensus 250 g~~~~a~~~~~~m~~ 264 (790)
+.......+++.+..
T Consensus 21 ~~~~~l~~yLe~~~~ 35 (140)
T smart00299 21 NLLEELIPYLESALK 35 (140)
T ss_pred CcHHHHHHHHHHHHc
Confidence 333344444443333
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.67 E-value=3.5 Score=35.00 Aligned_cols=80 Identities=11% Similarity=-0.022 Sum_probs=57.6
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 003872 206 LLVALRKSDRRSEFKQVFERLKEQKEFEFD-IYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVV 284 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 284 (790)
-.....+.|++++|.+.|+.+..+....+- ....-.++.+|.+.+++++|...+++..+..+.-...-|...+.+++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 344456789999999999999876544332 3456678889999999999999999998886544445566666665543
Q ss_pred C
Q 003872 285 G 285 (790)
Q Consensus 285 ~ 285 (790)
.
T Consensus 96 ~ 96 (142)
T PF13512_consen 96 E 96 (142)
T ss_pred H
Confidence 3
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.58 E-value=9.3 Score=36.00 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003872 120 ETFKLLLEPCIKSGKIDFAIEILDYMEELGT--SLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEA 183 (790)
Q Consensus 120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 183 (790)
..|+..+. -.+.|++++|.+.|+.+.+..+ +-...+.-.++-++-+.++++.|+..+++.++.
T Consensus 36 ~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 36 ELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34444333 3467888888888888876532 223445555566666777777777777777665
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=92.46 E-value=9.6 Score=39.40 Aligned_cols=148 Identities=11% Similarity=0.128 Sum_probs=98.9
Q ss_pred ChHHHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHh---------cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 003872 606 KLNLACKLFEIFTDM-GVHPV-NYTYNSMMSSFVK---------KGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKM 674 (790)
Q Consensus 606 ~~~~a~~~~~~~~~~-g~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 674 (790)
..+.|+.+|.+.... ...|+ ...|..+...+.. ..+..+|.++-+...+.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 567788899988722 22333 3445444433322 234566788888888775 34788888888878888
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHhccCCHHHH
Q 003872 675 GRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD---VVTFNTLIEVNGKAGRLKEA 751 (790)
Q Consensus 675 g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A 751 (790)
|+++.|...|++....++. ...+|-.....+..+|+.++|.+.+++..+. .|. ..+....++.|+..+ .++|
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn--~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD--IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhcCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 8999999999999886422 2334444444566789999999999997763 443 444555566777766 4777
Q ss_pred HHHHHHHH
Q 003872 752 HYFLKMML 759 (790)
Q Consensus 752 ~~~~~~m~ 759 (790)
+.++-+-.
T Consensus 427 ~~~~~~~~ 434 (458)
T PRK11906 427 IKLYYKET 434 (458)
T ss_pred HHHHhhcc
Confidence 77775543
No 259
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=2 Score=42.98 Aligned_cols=126 Identities=18% Similarity=0.163 Sum_probs=85.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhC-----CCC---------CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDM-----GVH---------PVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDI 661 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~-----g~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 661 (790)
.-.+.|.+.|++..|..-|+..... +.. .-..++.-|.-.|.+.+++.+|+..-...+..+ ++|.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch
Confidence 4567888899999999998885432 111 122445667777889999999999999888874 3466
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCC-HHHHHHHHHHHHh
Q 003872 662 ATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYN-TLINVLGKAGR-FDEANMLFEQMRT 725 (790)
Q Consensus 662 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~-~~~A~~~~~~m~~ 725 (790)
-..--=..+|...|+++.|+..|+++++. .|+-..-. -|+.+--+... .+...++|..|..
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~---~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL---EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666677888899999999999999885 45444433 33333333332 3344677777765
No 260
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.28 E-value=1.7 Score=41.75 Aligned_cols=78 Identities=23% Similarity=0.275 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCChHHHH
Q 003872 662 ATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT-----SGINPDVVTFN 736 (790)
Q Consensus 662 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 736 (790)
.++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|++.|+++.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 456667778888899999999999988874 56888899999999999999999999888775 68888888887
Q ss_pred HHHHH
Q 003872 737 TLIEV 741 (790)
Q Consensus 737 ~l~~~ 741 (790)
.+..+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 77766
No 261
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.18 E-value=27 Score=40.46 Aligned_cols=127 Identities=17% Similarity=0.151 Sum_probs=56.8
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCC--CchhhHHHHHHHHhc-cCChHHHHHHHHHHHHCCCCCCHhH--HHHHHHH
Q 003872 206 LLVALRKSDRRSEFKQVFERLKEQKEFE--FDIYGYNICIHAFGC-WGDLHTSLRLFKEMKEKGLVPDLHT--YNSLIQV 280 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~ 280 (790)
.+.-++..+++.+|.++.++..-..++- -+...+..-+.++.+ .++.+-...++-.+.+..+.-+.+. +.+-...
T Consensus 683 ~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~~ 762 (1265)
T KOG1920|consen 683 KVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQV 762 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhcccccccccee
Confidence 4455666777777766665543221111 112222222333333 3445555555555543322111100 0000011
Q ss_pred HHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 003872 281 LCVV----GKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSY--RMDDAMKIFSEMQY 334 (790)
Q Consensus 281 ~~~~----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~ 334 (790)
|... ...+...+.+.....+. .|+ ...-.+|.+|.+.+ .++.++....+...
T Consensus 763 ~~~r~~~d~kv~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 763 YMSRDPYDNKVNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred EEeccchhhHHHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 1111 12333444444433332 455 44556777888777 66777777766664
No 262
>PRK11906 transcriptional regulator; Provisional
Probab=92.00 E-value=2.9 Score=42.97 Aligned_cols=117 Identities=9% Similarity=-0.034 Sum_probs=86.5
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003872 605 GKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTIL 684 (790)
Q Consensus 605 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 684 (790)
....+|.+.-+...+.+ +-|+.....+..+..-.++++.|..+|++..... +....+|......+.-.|+.++|.+.+
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34567788888888887 6788888888887788888999999999988863 234556666666677789999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 685 DKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 685 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
++..+..+.+.-.....-.++.|+..+ +++|.++|.+-.
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 434 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKET 434 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhcc
Confidence 998876544444555555666777764 778888876543
No 263
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.90 E-value=20 Score=38.22 Aligned_cols=133 Identities=11% Similarity=0.076 Sum_probs=84.4
Q ss_pred cchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 003872 200 CVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQ 279 (790)
Q Consensus 200 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 279 (790)
...|..++..-......+.+..++..+..+ .|.-..-|......-.+.|..+.+..+|++-... ++.....|...+.
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 345555555544445556677777777742 3333445566666666778888888888887753 4445555555544
Q ss_pred HHH-hcCCHHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 280 VLC-VVGKVKDALIVWEELKGS-GHE-PNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 280 ~~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
.++ ..|+.+.....|+..... |.. .+...|...|..-...+++.....++++..+.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 433 356777777777776543 321 23456777777777778888888888888764
No 264
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.89 E-value=22 Score=38.84 Aligned_cols=113 Identities=13% Similarity=0.152 Sum_probs=86.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLI 704 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li 704 (790)
.-.+.+--+.-+...|+..+|.++-.+..- ||...|..=+.+++..+++++-+++-+.. ..+.-|....
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAksk-------ksPIGy~PFV 751 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSK-------KSPIGYLPFV 751 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhcc-------CCCCCchhHH
Confidence 335566667778888999999988776543 68888888899999999998877666542 2355677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHH
Q 003872 705 NVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKM 757 (790)
Q Consensus 705 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 757 (790)
.+|.+.|+.++|.+++-+.... . -.+.+|.+.|++.+|.+..-+
T Consensus 752 e~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999998765421 1 467889999999998766543
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.81 E-value=25 Score=39.11 Aligned_cols=179 Identities=14% Similarity=0.137 Sum_probs=97.3
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHH----HHhcCChHHHHHHHHHHHHhCCCCCHHHHHH
Q 003872 84 ACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEP----CIKSGKIDFAIEILDYMEELGTSLSPNVYDS 159 (790)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (790)
.-....-+..+.+...++.|..+.+.-. .+..+...+... +.+.|++++|...|-+-... .++ ..
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~---le~---s~ 402 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF---LEP---SE 402 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc---CCh---HH
Confidence 3445556777777777777777665432 233344444433 34668888888777554432 111 12
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhH
Q 003872 160 VLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGY 239 (790)
Q Consensus 160 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (790)
++.-|........-..+++.+.+.+ ..+...-..|+.+|.+.++.+...+..+...+ ..+ ..-.
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~g------------la~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~---~fd~ 466 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKG------------LANSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEW---FFDV 466 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcc------------cccchhHHHHHHHHHHhcchHHHHHHHhcCCC-cce---eeeH
Confidence 3444555555555555666666653 34445566677778877777776666554431 111 1123
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 240 NICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEEL 297 (790)
Q Consensus 240 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 297 (790)
...+..+.+.+-.++|..+-..... ....... .+-..+++++|++.+..+
T Consensus 467 e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 467 ETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 3455555566666666655444432 2222222 233456777777777665
No 266
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.80 E-value=8.3 Score=33.68 Aligned_cols=135 Identities=16% Similarity=0.104 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccccc
Q 003872 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPN-VYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
+...|...+.. ++.++.++|+.-|..+.+.|...-+. ............|+...|...|+++-... .
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-----------~ 125 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-----------S 125 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-----------C
Confidence 34455554443 45566777777777777665432222 12333344556677777777777664421 1
Q ss_pred CCCcc-hHHHHH--HHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHC
Q 003872 197 LPGCV-ACNELL--VALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK 265 (790)
Q Consensus 197 ~~~~~-~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 265 (790)
.|... ....|- -.+...|.+++.....+.+.. .+-+.-...-..|.-+-.+.|++.+|.+.|..+...
T Consensus 126 ~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 126 IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 11111 111111 123456777776666666553 333333444556666667777777777777777654
No 267
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.77 E-value=18 Score=37.60 Aligned_cols=163 Identities=10% Similarity=0.119 Sum_probs=86.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcch
Q 003872 124 LLLEPCIKSGKIDFAIEILDYMEELGTSLS-PNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVA 202 (790)
Q Consensus 124 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (790)
.+|....+..++..-++.-.+..+.. |+ ...|..| +--......++..++++.++.+...-..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~--pdCAdAYILL--AEEeA~Ti~Eae~l~rqAvkAgE~~lg~------------ 236 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN--PDCADAYILL--AEEEASTIVEAEELLRQAVKAGEASLGK------------ 236 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh--hhhhHHHhhc--ccccccCHHHHHHHHHHHHHHHHHhhch------------
Confidence 34444456666666666666666532 22 1222222 2223455788888888887765321100
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCC-CCHhHHHHHHHHH
Q 003872 203 CNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLV-PDLHTYNSLIQVL 281 (790)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~ 281 (790)
.......-..++.+.. ....+-..+-..+..++-+.|+.++|.+.+++|.+.... -.......|+.++
T Consensus 237 ----------s~~~~~~g~~~e~~~~-Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~L 305 (539)
T PF04184_consen 237 ----------SQFLQHHGHFWEAWHR-RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEAL 305 (539)
T ss_pred ----------hhhhhcccchhhhhhc-cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHH
Confidence 0000000011111111 222222333345666667788888888888888764222 1334667788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPN-EFTHRIII 313 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li 313 (790)
...+.+.++..++.+..+...+.+ ...|+..+
T Consensus 306 Lelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 306 LELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 888888888888888754432222 33455433
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.66 E-value=18 Score=37.74 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--hHHHHHHHHH
Q 003872 666 VVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD--VVTFNTLIEV 741 (790)
Q Consensus 666 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~ 741 (790)
.+..++.+.|+.++|.+.+.++++..+..-+......|+.++...+.+.++..++.+-.+.. .|. ..+|+..+-.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALLk 340 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHHH
Confidence 45556678899999999999998764222244466678999999999999999988865432 233 3455554433
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.62 E-value=0.59 Score=30.43 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003872 120 ETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSV 160 (790)
Q Consensus 120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (790)
.++..+...|.+.|++++|+++|+++++..+ .++..+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHh
Confidence 3566777888888888888888888887652 355555444
No 270
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.59 E-value=10 Score=37.34 Aligned_cols=167 Identities=13% Similarity=-0.023 Sum_probs=93.2
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCc---hhhHHHHHHHHhccCChHHHHHHHHHHHHCC-----CCCCHhH
Q 003872 202 ACNELLVALRKSDRRSEFKQVFERLKEQKEFEFD---IYGYNICIHAFGCWGDLHTSLRLFKEMKEKG-----LVPDLHT 273 (790)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~~ 273 (790)
.|..+..++.+.-++.+++.+-..-....|..|. -....++..++...+.++++++.|+...... .-....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444555555555666666666555554444442 1233345566666777888888887765431 1123456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHH----CCCCC-
Q 003872 274 YNSLIQVLCVVGKVKDALIVWEELKG----SGHEPNEFTHRI-----IIQGCCKSYRMDDAMKIFSEMQY----NGLIP- 339 (790)
Q Consensus 274 ~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~----~~~~p- 339 (790)
|..|-..|.+..|+++|.-...+..+ .++..-..-|.. |.-++...|.+..|.+.-++..+ .|-.+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77788888888888877766554432 222211122222 22345566777777777766543 23111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 340 DTVVYNSLLNGMFKSRKVMEACQLFEKMV 368 (790)
Q Consensus 340 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~ 368 (790)
-......+.+.|-..|+.+.|+.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12233455666777788888777766543
No 271
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.40 E-value=3.1 Score=32.52 Aligned_cols=80 Identities=16% Similarity=0.287 Sum_probs=54.6
Q ss_pred chhhHHHHHHHHHhcCCcc--hHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLE--EVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSV 160 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~--~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (790)
+.+.|.+--..+......+ +..+-++++...+..|++.+..+.+++|.+.+++..|+++|+-++.. +......|..+
T Consensus 7 t~eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~ 85 (108)
T PF02284_consen 7 TDEEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYI 85 (108)
T ss_dssp -HHHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHH
T ss_pred CHHHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHH
Confidence 4556666666677666555 56777888888899999999999999999999999999999988765 22223366666
Q ss_pred HHH
Q 003872 161 LVS 163 (790)
Q Consensus 161 l~~ 163 (790)
++-
T Consensus 86 lqE 88 (108)
T PF02284_consen 86 LQE 88 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 272
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.39 E-value=4.7 Score=33.18 Aligned_cols=92 Identities=20% Similarity=0.183 Sum_probs=58.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCC
Q 003872 635 SFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD--VVMYNTLINVLGKAGR 712 (790)
Q Consensus 635 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~ 712 (790)
+....|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|+.-+++.++..|.+-- ...|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 355667777777777777665 3346667777777777777777777777777766432211 1122222334556677
Q ss_pred HHHHHHHHHHHHhcC
Q 003872 713 FDEANMLFEQMRTSG 727 (790)
Q Consensus 713 ~~~A~~~~~~m~~~g 727 (790)
-+.|+.=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777776654
No 273
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.02 E-value=24 Score=37.58 Aligned_cols=100 Identities=9% Similarity=-0.052 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003872 375 SCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLI 454 (790)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 454 (790)
+..+|..-+.--...|+.+.+.-+++..... +..-...|-..+.-....|+.+.|..++....+--.+-.+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3455666666666777777777777766543 111122233344444445777777777766655433322222221222
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 003872 455 GFHKYGRWDFTERLMKHIRDG 475 (790)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~ 475 (790)
..-..|+++.|..+++.+.+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh
Confidence 233456888888888877664
No 274
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.98 E-value=5.9 Score=33.74 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=22.7
Q ss_pred cCCHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003872 639 KGYFNQAWGVLNEMGEKFCPTD---IATYNVVIQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 639 ~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
.++++++..++..|.-. .|+ ..++...+ +...|++++|..+|.++.+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555442 222 22222222 44555555555555555444
No 275
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.67 E-value=11 Score=32.98 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=24.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 709 KAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
..|.+++.....+.+...|-+.....-..|.-+-.+.|++..|..+|+.+-+
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4445555444444444333233333334444444555555555555555543
No 276
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.55 E-value=0.8 Score=29.80 Aligned_cols=27 Identities=11% Similarity=0.066 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDM 620 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~ 620 (790)
+..+...|...|++++|.++|++.++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455555555555555555555544
No 277
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.53 E-value=18 Score=35.31 Aligned_cols=47 Identities=13% Similarity=-0.003 Sum_probs=21.6
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 248 CWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWE 295 (790)
Q Consensus 248 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 295 (790)
..|-+++|.+.-++..+.+. .|.-...++.+.+-..|+..++.+.+.
T Consensus 187 E~g~y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HhccchhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 34555555555444444321 133344444444444555555554443
No 278
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.15 E-value=26 Score=36.50 Aligned_cols=164 Identities=15% Similarity=0.144 Sum_probs=121.3
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
.+.....+++..+...-...-..-+..+|...| .+-..|-.++..|..+ ..++-..+|+++.+..+. |.+.-.-|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355566788888888888888888888888876 4667888899999888 678889999998887443 455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCChHHHHHHHHH
Q 003872 669 QGLGKMGRADLASTILDKLMKQGGGYLD------VVMYNTLINVLGKAGRFDEANMLFEQMRT-SGINPDVVTFNTLIEV 741 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~ 741 (790)
.-|.+ ++.+.+..+|.++..+- -|- ...|.-++..- ..+.+...++...... .|...-.+.+.-+-.-
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 65655 88999999999988773 331 23565555422 3467778888777775 5555556667777788
Q ss_pred HhccCCHHHHHHHHHHHHhC
Q 003872 742 NGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 742 ~~~~g~~~~A~~~~~~m~~~ 761 (790)
|....+|.+|++++..+.+.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 215 YSENENWTEAIRILKHILEH 234 (711)
T ss_pred hccccCHHHHHHHHHHHhhh
Confidence 88899999999999988765
No 279
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.13 E-value=16 Score=34.04 Aligned_cols=204 Identities=11% Similarity=0.081 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCC
Q 003872 155 NVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEF 234 (790)
Q Consensus 155 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (790)
..|.....+|-...++++|...+.+..+.... +. +.+.....++.|.-+.+++.+ ++-
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEn------------nr-------slfhAAKayEqaamLake~~k---lsE 89 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN------------NR-------SLFHAAKAYEQAAMLAKELSK---LSE 89 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh------------cc-------cHHHHHHHHHHHHHHHHHHHH---hHH
Confidence 34666667777888888888877776543211 11 112223344555555555544 222
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCC---HHH
Q 003872 235 DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKG---SGHEPN---EFT 308 (790)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~g~~~~---~~~ 308 (790)
-+..|+.-...|...|..+.|--.+++..+. ....++++|+++|.+... .+ ..+ ...
T Consensus 90 vvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~-dr~~ma~el 152 (308)
T KOG1585|consen 90 VVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEED-DRDQMAFEL 152 (308)
T ss_pred HHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhcc-chHHHHHHH
Confidence 3445566666777777777766666554332 122344555555554321 11 011 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHH
Q 003872 309 HRIIIQGCCKSYRMDDAMKIFSEMQYN----GLIPDT-VVYNSLLNGMFKSRKVMEACQLFEKMVQDG---VRTSCWTHN 380 (790)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~~~~~~a~~l~~~~~~~~---~~~~~~~~~ 380 (790)
+...-+.+.+...+++|-..+.+-... .--++. ..|...|-.+....++..|...++.-.+.+ -.-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 333334455555555544333322100 001111 223444444555556666666666643321 112334444
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 003872 381 ILIDGLFRNGRAEAAYTL 398 (790)
Q Consensus 381 ~li~~~~~~~~~~~a~~~ 398 (790)
.|+.+| ..|+.+.+.++
T Consensus 233 nLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHh-ccCCHHHHHHH
Confidence 445444 34444444443
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.13 E-value=3 Score=40.14 Aligned_cols=77 Identities=10% Similarity=0.127 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCCHHHHH
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGE-----KFCPTDIATYN 665 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 665 (790)
..++..++..+..+++.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3445566677777777777777777776665 55667777777777777777777777776654 35566555444
Q ss_pred HHH
Q 003872 666 VVI 668 (790)
Q Consensus 666 ~li 668 (790)
...
T Consensus 232 ~y~ 234 (280)
T COG3629 232 LYE 234 (280)
T ss_pred HHH
Confidence 433
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.93 E-value=0.62 Score=28.70 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=20.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 734 TFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 734 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
No 282
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.70 E-value=5.4 Score=36.08 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=54.3
Q ss_pred chHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCChhHHH
Q 003872 101 EEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEEL---GTSLSPNVYDSVLVSLVRKKQLGLAM 174 (790)
Q Consensus 101 ~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~ 174 (790)
+.|.+.|-.+...+..-++.....|...|. ..+.+++++++.+..+. +-.++++.+.+|+..+-+.++++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445566666666655446666666666665 67899999999888875 33678999999999999999988874
No 283
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.82 E-value=14 Score=32.18 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=29.3
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003872 599 SIFLAKGKLNLACKLFEIFTDMGVHPVNYT-YNSMMSSFVKKGYFNQAWGVLNEMGEK 655 (790)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~ 655 (790)
..-...++.+++..++..+.-. .|.... -..-...+...|++.+|..+|+++...
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3334456666666666666544 233222 122233455666677777776666554
No 284
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.73 E-value=3.5 Score=31.88 Aligned_cols=70 Identities=10% Similarity=0.084 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhH-HHHHHHHHHh
Q 003872 712 RFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTT-LDFLGREIDR 782 (790)
Q Consensus 712 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-l~~l~~~~~~ 782 (790)
+.=++++-++.+....+.|++.+..+.++||.|.+++.-|+++++..+.+ +..+...|.. |.-+-..+.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqeikp~l~E 92 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEIKPTLKE 92 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHHhHHHHH
Confidence 34467777777888889999999999999999999999999999988743 2223334543 3444444433
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.50 E-value=1.1 Score=27.56 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 699 MYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 699 ~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
+|+.|..+|.+.|++++|..+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677888888888888888888754
No 286
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.41 E-value=7.1 Score=30.28 Aligned_cols=78 Identities=17% Similarity=0.251 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHhcCC--cchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003872 85 CTYSHIFRTVCRAGF--LEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLV 162 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~--~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (790)
+.|.+--..+...-+ .=++.+-++++...+..|++.+..+.+++|.+.+++..|+++|+-++.. +......|..++.
T Consensus 6 EeF~aRye~~F~~~~iD~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 6 EEFDARYETYFNRPDIDGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 445555455554443 2356777788888889999999999999999999999999999987743 2224456666554
Q ss_pred H
Q 003872 163 S 163 (790)
Q Consensus 163 ~ 163 (790)
-
T Consensus 85 e 85 (103)
T cd00923 85 E 85 (103)
T ss_pred H
Confidence 3
No 287
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.29 E-value=10 Score=29.78 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhH-HHHHHHHHHhh
Q 003872 715 EANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTT-LDFLGREIDRL 783 (790)
Q Consensus 715 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-l~~l~~~~~~~ 783 (790)
+..+-+..+....+.|++.+..+.+.+|.|.+++.-|+++++..+.+ +.+....|.. +.-+-..+++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqElkPtl~EL 96 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQELKPTLEEL 96 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHHhhHHHHh
Confidence 56677777777889999999999999999999999999999999754 2333325543 34455544443
No 288
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.17 E-value=20 Score=32.67 Aligned_cols=177 Identities=16% Similarity=0.142 Sum_probs=105.0
Q ss_pred hHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCCHHHHHHHH
Q 003872 572 LFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSS--FVKKGYFNQAWGVL 649 (790)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~ 649 (790)
+..+++-.-.....+.|.-+.+||-+.--+...|+++.|.+.|+...+.... .-|..+-++ +.-.|++.-|.+-+
T Consensus 80 L~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~---y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 80 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc---chHHHhccceeeeecCchHhhHHHH
Confidence 4444555555555667788999999999999999999999999999876422 334333333 33468888888777
Q ss_pred HHHhhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003872 650 NEMGEKFC-PTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGI 728 (790)
Q Consensus 650 ~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 728 (790)
-..-+... .|=...|--++ ...-++.+|..-+.+=.+. ...+..-|+.+--.+ |.+. ...+++++.+. -
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~--~d~e~WG~~iV~~yL---gkiS-~e~l~~~~~a~-a 226 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK--SDKEQWGWNIVEFYL---GKIS-EETLMERLKAD-A 226 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh--ccHhhhhHHHHHHHH---hhcc-HHHHHHHHHhh-c
Confidence 76655422 12222222222 2334667776554332221 223344444332222 2221 23344444432 1
Q ss_pred CCC-------hHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 729 NPD-------VVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 729 ~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
..+ ..||--|.+-+...|+.++|..+|+-....
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 112 357778888999999999999999988754
No 289
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.02 E-value=37 Score=35.46 Aligned_cols=184 Identities=10% Similarity=0.014 Sum_probs=114.8
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVL 161 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (790)
.+....-+++.+++.+-...-+..+-.+|...| -+-..|..+++.|... ..+.-..+++++++..+. |...-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 455666778888888888888888888898876 3677888999999888 678888999999887542 333344444
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNI 241 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (790)
..| ..++.+.+...|.+++....+...... -...|.-|... -..+.+....+...+....|...-...+.-
T Consensus 140 ~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~------i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qd 210 (711)
T COG1747 140 DKY-EKIKKSKAAEFFGKALYRFIPRRQNAA------IKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQD 210 (711)
T ss_pred HHH-HHhchhhHHHHHHHHHHHhcchhhhhh------HHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 444 448888888888888776322110000 00112222211 134455555555555555555555556666
Q ss_pred HHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 003872 242 CIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQ 279 (790)
Q Consensus 242 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 279 (790)
+-.-|....++++|++++..+.+..-. |...-..++.
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 666677777777777777776665322 4444444443
No 290
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.92 E-value=30 Score=34.26 Aligned_cols=127 Identities=14% Similarity=0.249 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCC---
Q 003872 254 TSLRLFKEMKEKGLVPDLHTYNSLIQVLCV--VG----KVKDALIVWEELKGSGH---EPNEFTHRIIIQGCCKSYR--- 321 (790)
Q Consensus 254 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~~~--- 321 (790)
....+++.|.+.|+.-+..+|-+..-.... .. ...++..+|+.|++... .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344455555555555454444432222222 11 13455566666655421 1222333333322 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003872 322 -MDDAMKIFSEMQYNGLIPDTV--VYNSLLNGMFKSRK--VMEACQLFEKMVQDGVRTSCWTHNIL 382 (790)
Q Consensus 322 -~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~--~~~a~~l~~~~~~~~~~~~~~~~~~l 382 (790)
.+.+..+|+.+.+.|+..+.. ....++........ ..++..+++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 234555555555555443322 12222221111111 33555666666666666555554433
No 291
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.12 E-value=10 Score=34.09 Aligned_cols=59 Identities=14% Similarity=0.028 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003872 379 HNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDG--ITFSIVVLQLCREGQIEEALRLVEEM 437 (790)
Q Consensus 379 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m 437 (790)
+..+...|++.|+.+.|.+.|.++.+....+.. ..+-.+++.....+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444445555555555555444443222211 12333444444455555554444443
No 292
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.82 E-value=43 Score=34.96 Aligned_cols=100 Identities=13% Similarity=0.130 Sum_probs=68.8
Q ss_pred CCChhhH-HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCCCCHHH
Q 003872 623 HPVNYTY-NSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK--MGRADLASTILDKLMKQGGGYLDVVM 699 (790)
Q Consensus 623 ~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~p~~~~ 699 (790)
.|+..++ +.+++.+...|-..+|..++..+... .+|+...|.-+|..-.. .-+...+..+++.|....| .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4555554 45677777788888888888888776 56677777766653221 1236777888888888765 56666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 700 YNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 700 ~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
|--.+..-...|..+.+-.++.++..
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 77766666677888888777776654
No 293
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.72 E-value=71 Score=37.36 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=24.8
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHH
Q 003872 103 VPSLLNSMQEDDVVVDSETFKLLLEPCIKSG--KIDFAIEILDYMEE 147 (790)
Q Consensus 103 a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~ 147 (790)
.-+++.....+. .|+ .-...+|.+|++.+ ..+.|++...++..
T Consensus 776 vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 776 VCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 334444444443 334 45567888888876 56666666665554
No 294
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.66 E-value=55 Score=36.03 Aligned_cols=184 Identities=17% Similarity=0.096 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHhcCCCCCchhhHHHHHHH-HhccCChHHHHHHHHHHHH-------CCCCCCHhHHHHHHHHHHhcC--
Q 003872 216 RSEFKQVFERLKEQKEFEFDIYGYNICIHA-FGCWGDLHTSLRLFKEMKE-------KGLVPDLHTYNSLIQVLCVVG-- 285 (790)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~-- 285 (790)
...+...++...+.....+-...-.....+ +....|.+.|+.+|+.+.+ .| .+....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 456777777776632222222222222233 4566788888888888876 44 3334445555555532
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHH
Q 003872 286 ---KVKDALIVWEELKGSGHEPNEFTHRIIIQGCCK-SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMF--KSRKVME 359 (790)
Q Consensus 286 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~~~~~~ 359 (790)
+.+.|+.++....+.| .|+....-..+..... ..+...|.++|....+.|.. ....+..++.... -..+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 5566777777777766 4454443333322222 24566777777777776632 2221211111111 2345677
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003872 360 ACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKG 406 (790)
Q Consensus 360 a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 406 (790)
|..+++...+.| .|...--...+..+.. ++++.+.-.+..+...|
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 777777777766 2221111122222222 55555555554444443
No 295
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.58 E-value=7.1 Score=37.62 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 287 VKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQ 333 (790)
Q Consensus 287 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 333 (790)
.++++.++..=.+.|+-||..+++.+|+.+.+.+++.+|.++...|.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34444444444445555555555555555555555555554444444
No 296
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.27 E-value=28 Score=32.29 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=14.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCccchh
Q 003872 745 AGRLKEAHYFLKMMLDSGCTPNHVTDT 771 (790)
Q Consensus 745 ~g~~~~A~~~~~~m~~~~~~p~~~t~~ 771 (790)
.|++.+|+.++++.....+..+..-|.
T Consensus 167 leqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHhH
Confidence 355666666666665554444444443
No 297
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.00 E-value=0.054 Score=47.15 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=24.1
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003872 90 IFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILD 143 (790)
Q Consensus 90 l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 143 (790)
++..+.+.+.+..+..+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444444555555555544443333344444455555555444444444443
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.82 E-value=14 Score=33.34 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD--IATYNVVIQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
..+..+...|++.|+.++|++.|.++.+....+. ...+-.+|......+++..+...+.++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4455666677777777777777777666533322 234455666666677777776666665443
No 299
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=84.22 E-value=50 Score=33.34 Aligned_cols=124 Identities=12% Similarity=0.150 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHH
Q 003872 643 NQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKA---GRFDEANML 719 (790)
Q Consensus 643 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~ 719 (790)
+.-+.+++++++. .+.+...+..++..+.+..+.+...+-|+++.... +-+...|..+++..... -.+++...+
T Consensus 48 E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3445666666665 23455566666666666666777777777776653 23556666666554431 235555555
Q ss_pred HHHHHh------cCC------CCC-----hHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCCccc
Q 003872 720 FEQMRT------SGI------NPD-----VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGC-TPNHVT 769 (790)
Q Consensus 720 ~~~m~~------~g~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t 769 (790)
|.+..+ .|. .++ ..++.-+..-+..+|..+.|+.+++.+.+.++ .|....
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~ 192 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLS 192 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccc
Confidence 554442 111 000 11222333345557777888888877777654 444433
No 300
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.09 E-value=78 Score=35.49 Aligned_cols=185 Identities=12% Similarity=0.056 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCCCCCc--hhhHHHHHHHHh-ccCChHHHHHHHHHHHHCCCCCCHh-----HHHHHHHHHHhcCCHHH
Q 003872 218 EFKQVFERLKEQKEFEFD--IYGYNICIHAFG-CWGDLHTSLRLFKEMKEKGLVPDLH-----TYNSLIQVLCVVGKVKD 289 (790)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~~~ 289 (790)
.|+..++.+.+...++|. ..++-.+...+. ...+++.|...+.+....--.++.. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 355666666644556554 345555666665 5688999999998775432222221 1223456666666555
Q ss_pred HHHHHHHHHhC----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--hcCCHHH
Q 003872 290 ALIVWEELKGS----GHEPNEFTHRII-IQGCCKSYRMDDAMKIFSEMQYNG---LIPDTVVYNSLLNGMF--KSRKVME 359 (790)
Q Consensus 290 a~~~~~~~~~~----g~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~--~~~~~~~ 359 (790)
|...+++..+. +..+-...|..+ +..+...++...|.+.++.+...- ..|-..++..++.+.. ..+..+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 88888776543 122233344444 333333478999999998876432 2334444555555544 3455666
Q ss_pred HHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 003872 360 ACQLFEKMVQDG---------VRTSCWTHNILIDGLF--RNGRAEAAYTLFCDLK 403 (790)
Q Consensus 360 a~~l~~~~~~~~---------~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~ 403 (790)
+.+.+..+.... -.|...+|..+++.++ ..|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777666663321 1245566777776554 4677666666555443
No 301
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=83.68 E-value=44 Score=32.34 Aligned_cols=172 Identities=14% Similarity=0.087 Sum_probs=84.5
Q ss_pred CCHhHHHHHH-HHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003872 269 PDLHTYNSLI-QVLCVVGK-VKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNS 346 (790)
Q Consensus 269 p~~~~~~~ll-~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 346 (790)
|+...++.|. +.+.+.|= ..-|.++|+..... ...+.++.++.+.+.-+.-+++| +|+..+-..
T Consensus 163 ~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~ 228 (412)
T KOG2297|consen 163 LPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEH 228 (412)
T ss_pred CCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHH
Confidence 3455555554 34444442 45677777776532 23455666665544444443333 566666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh----HHHHHHHHH
Q 003872 347 LLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGIT----FSIVVLQLC 422 (790)
Q Consensus 347 li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ll~~~~ 422 (790)
+...+...|--+-..-.-.++.. | .-...-..|..-..+...+++.....++-.+..-.|+... |+.++++-
T Consensus 229 Fak~Ft~agL~elvey~~~q~~~-~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsav- 304 (412)
T KOG2297|consen 229 FAKYFTDAGLKELVEYHRNQQSE-G--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAV- 304 (412)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHH-
Confidence 66555554432221111111100 0 0011122333444455567777666655444444456544 55555543
Q ss_pred HcCCHHHHHHHH-HHHHhCCCccCHHHHHHHHHHHHhcCCchHHH
Q 003872 423 REGQIEEALRLV-EEMEGRGFVVDLVTISSLLIGFHKYGRWDFTE 466 (790)
Q Consensus 423 ~~g~~~~a~~~~-~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 466 (790)
.|.+-.++. ++.++ ...+|..|+.+++..|+.+...
T Consensus 305 ---eWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 305 ---EWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred ---hhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHHH
Confidence 332222222 22222 3557889999999999876443
No 302
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.38 E-value=2.2 Score=25.85 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 003872 697 VVMYNTLINVLGKAGRFDEA 716 (790)
Q Consensus 697 ~~~~~~li~~~~~~g~~~~A 716 (790)
...|+.+..+|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444443
No 303
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.25 E-value=90 Score=34.89 Aligned_cols=98 Identities=12% Similarity=0.044 Sum_probs=51.8
Q ss_pred CCCCCCChHHHHHHhhcCCCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHH
Q 003872 42 PRSIPISEPLVLQVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSET 121 (790)
Q Consensus 42 ~~~~~~~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~ 121 (790)
..|.|-+.+.|...++.....+. .|... .-........| ++|--|.|+|.+++|.++....... .......
T Consensus 77 ~gg~p~~~~~V~afv~~~~~~~~------~~~~~-~l~~~~~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~ 147 (613)
T PF04097_consen 77 LGGVPSTYNKVRAFVNVRLKRPG------AWTDS-GLEIVNGDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERS 147 (613)
T ss_dssp --SSS-HHHHHHHHHHCTTBESS------CBSST-T--EETTEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTH
T ss_pred ccCCCCcHHHHHHHHHHHhcccC------CCccc-ccccCCCCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHH
Confidence 34556666677777764332211 11100 00011233445 4677889999999999999555543 2334567
Q ss_pred HHHHHHHHHhcCC-------hHHHHHHHHHHHHh
Q 003872 122 FKLLLEPCIKSGK-------IDFAIEILDYMEEL 148 (790)
Q Consensus 122 ~~~li~~~~~~~~-------~~~a~~~~~~~~~~ 148 (790)
|...+..|....+ -++...-|++..+.
T Consensus 148 f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 148 FPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 7788888876532 23455555555544
No 304
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.04 E-value=51 Score=31.93 Aligned_cols=58 Identities=10% Similarity=0.033 Sum_probs=28.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 003872 268 VPDLHTYNSLIQVLCVVGKVKDALIVWEELKGS-GHEPNEFTHRIIIQGCCKSYRMDDA 325 (790)
Q Consensus 268 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~a 325 (790)
.++..+...++..++..+++.+..++++..... +...|...|..+|+.....|+..-.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 344444445555555555555555555444332 3334444555555555555554433
No 305
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.50 E-value=14 Score=39.06 Aligned_cols=98 Identities=18% Similarity=0.130 Sum_probs=47.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEAC 361 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 361 (790)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|....+ |..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34555555555544432 344456666666666666666665554432 333444444455544444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003872 362 QLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFC 400 (790)
Q Consensus 362 ~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 400 (790)
.+-....+.|. .|...-+|...|+++++.+++.
T Consensus 713 ~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 713 VLASLAKKQGK------NNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHH
Confidence 44444444331 1222334445555555555543
No 306
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.38 E-value=14 Score=35.81 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=59.4
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003872 266 GLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSG---HEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTV 342 (790)
Q Consensus 266 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 342 (790)
|......+...++..-....+++.+...+-++...- ..++. +-.+.++.+. .-+.++++.++..=+..|+.||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 333344444444444444556666666665554321 11111 1112223222 235667777777777778888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 343 VYNSLLNGMFKSRKVMEACQLFEKMVQD 370 (790)
Q Consensus 343 ~~~~li~~~~~~~~~~~a~~l~~~~~~~ 370 (790)
+++.+|+.+.+.+++..|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888877777777666654
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.71 E-value=3.9 Score=24.35 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=13.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 735 FNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 735 ~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
|..+...+...|++++|++.+++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4445555555555555555555554
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.40 E-value=3.7 Score=25.94 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 733 VTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 733 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 467777888888888888888887765
No 309
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.10 E-value=46 Score=30.09 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=42.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNI 241 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (790)
..+...+++++|...++..+....+ ......+--.|.+.....|.+++|...++...+ .++ .......
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~D---------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-~~w--~~~~~el 164 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKD---------ENLKALAALRLARVQLQQKKADAALKTLDTIKE-ESW--AAIVAEL 164 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchh---------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-ccH--HHHHHHH
Confidence 4455666666666666655432100 000011122234444555556666555555443 111 1112223
Q ss_pred HHHHHhccCChHHHHHHHHHHHHC
Q 003872 242 CIHAFGCWGDLHTSLRLFKEMKEK 265 (790)
Q Consensus 242 li~~~~~~g~~~~a~~~~~~m~~~ 265 (790)
-.+.+...|+-++|..-|.+..+.
T Consensus 165 rGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 165 RGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hhhHHHHcCchHHHHHHHHHHHHc
Confidence 344555556666666666665555
No 310
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.92 E-value=75 Score=32.49 Aligned_cols=63 Identities=11% Similarity=0.009 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 307 FTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIP---DTVVYNSLLNGMFKSRKVMEACQLFEKMVQ 369 (790)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~l~~~~~~ 369 (790)
.+|..+...+.+.|.++.|...+..+...+... ...+...-.+..-..|+..+|+..++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555555432110 122222333444455555555555555544
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.55 E-value=5 Score=23.98 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 699 MYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 699 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
+|..+..+|...|++++|...|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555566666666666665554
No 312
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=79.49 E-value=54 Score=30.61 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCccCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 003872 412 ITFSIVVLQLCREGQIEEALRLVEEMEGR-GFVVDLVTISSLLIGFHKYGRWDFTERLMKHIR 473 (790)
Q Consensus 412 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (790)
..+......+...+++..+...+...... ........+..+...+...+++..+...+....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444555555556666655555555432 122233344444444444455555555554444
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.71 E-value=5.3 Score=25.19 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 698 VMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 698 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677778888888888888888887764
No 314
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=78.60 E-value=58 Score=30.41 Aligned_cols=224 Identities=17% Similarity=0.059 Sum_probs=132.0
Q ss_pred CChHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003872 250 GDLHTSLRLFKEMKEKGLV-PDLHTYNSLIQVLCVVGKVKDALIVWEELKGS-GHEPNEFTHRIIIQGCCKSYRMDDAMK 327 (790)
Q Consensus 250 g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~ 327 (790)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555544222 12455666666777777777777777666542 223444555556666666677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003872 328 IFSEMQYNGLIPDTVVYNSLLN-GMFKSRKVMEACQLFEKMVQDGV--RTSCWTHNILIDGLFRNGRAEAAYTLFCDLKK 404 (790)
Q Consensus 328 ~~~~m~~~~~~p~~~~~~~li~-~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 404 (790)
.+.........+ ......... .+...|+.+.+...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777776543332 112222222 56777888888888877754221 11233333444445667788888888877776
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 003872 405 KGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDG 475 (790)
Q Consensus 405 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (790)
.........+..+...+...++++.+...+......... ....+..+...+...+..+.+...+......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 632213555666777777777888888888877765322 2334444444444666677777777776653
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.43 E-value=43 Score=28.78 Aligned_cols=52 Identities=10% Similarity=0.201 Sum_probs=26.0
Q ss_pred hccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHC
Q 003872 212 KSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK 265 (790)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 265 (790)
..++.+++..++..|.--..-.+...++...+ +...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 35566666666666654222222233333222 34556666666666666554
No 316
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=78.30 E-value=3.1 Score=25.16 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=8.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHH
Q 003872 625 VNYTYNSMMSSFVKKGYFNQA 645 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A 645 (790)
+...|+.|...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 334444444444444444443
No 317
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.51 E-value=1.2e+02 Score=33.47 Aligned_cols=114 Identities=14% Similarity=0.118 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH----HcCCHHHH
Q 003872 356 KVMEACQLFEKMVQDGVRTSCWTHNILIDGLFR-NGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLC----REGQIEEA 430 (790)
Q Consensus 356 ~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~g~~~~a 430 (790)
+.+.|..++......|. |+....-..+..... ..+...|.++|...-+.|.. ..+-.+..+|. -..+.+.|
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHHHH
Confidence 44556666666655552 233222111111111 13455666666666666542 11111111111 12356666
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 003872 431 LRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDG 475 (790)
Q Consensus 431 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (790)
..++....++|.. ...-....+..+.. +.++.+.-.+..+.+.
T Consensus 384 ~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 384 FAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAEL 426 (552)
T ss_pred HHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHh
Confidence 6666666666522 21112222222333 5555555555544443
No 318
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=77.22 E-value=60 Score=29.85 Aligned_cols=162 Identities=14% Similarity=0.021 Sum_probs=81.9
Q ss_pred CCCc-hhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HH
Q 003872 232 FEFD-IYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNE--FT 308 (790)
Q Consensus 232 ~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~ 308 (790)
+.|+ ...||-+.-.+...|+++.|.+.|+...+....-+-...|.-|. +--.|++.-|.+-+-..-+.+ +.|+ ..
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~L 171 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDD-PNDPFRSL 171 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcC-CCChHHHH
Confidence 3444 45677777778888888888888888887744433333333232 224577777777776665543 2222 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCC------CCCHHHHH
Q 003872 309 HRIIIQGCCKSYRMDDAMKIFS-EMQYNGLIPDTVVYNSLLNGMF-KSRKVMEACQLFEKMVQDGV------RTSCWTHN 380 (790)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~li~~~~-~~~~~~~a~~l~~~~~~~~~------~~~~~~~~ 380 (790)
|--++. ..-++.+|..-+. +... .|..-|...|-.+. ..=..+. +++.+....- ..=+.||-
T Consensus 172 WLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~a~~n~~~Ae~LTEtyF 241 (297)
T COG4785 172 WLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEET---LMERLKADATDNTSLAEHLTETYF 241 (297)
T ss_pred HHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHH---HHHHHHhhccchHHHHHHHHHHHH
Confidence 222221 2334555544333 3332 24444444333322 1112222 2222221100 01134556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC
Q 003872 381 ILIDGLFRNGRAEAAYTLFCDLKKK 405 (790)
Q Consensus 381 ~li~~~~~~~~~~~a~~~~~~~~~~ 405 (790)
.|...+...|+.++|..+|+-....
T Consensus 242 YL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 242 YLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHH
Confidence 6666666677777777777666554
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.97 E-value=28 Score=31.65 Aligned_cols=79 Identities=11% Similarity=0.005 Sum_probs=60.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHH
Q 003872 132 SGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALR 211 (790)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 211 (790)
...-+.|.+.|-.+...+.--++.....|..-|. ..+.++++.++.+.++..... ..+|+..+..|++.+.
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~--------~~~n~eil~sLas~~~ 189 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD--------DNFNPEILKSLASIYQ 189 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC--------CCCCHHHHHHHHHHHH
Confidence 3344678888888887776667777777777776 678999999999999875432 3667778888888888
Q ss_pred hccchHHH
Q 003872 212 KSDRRSEF 219 (790)
Q Consensus 212 ~~~~~~~a 219 (790)
+.|+++.|
T Consensus 190 ~~~~~e~A 197 (203)
T PF11207_consen 190 KLKNYEQA 197 (203)
T ss_pred Hhcchhhh
Confidence 88887766
No 320
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=76.17 E-value=67 Score=29.92 Aligned_cols=142 Identities=15% Similarity=0.196 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 003872 593 MVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLG 672 (790)
Q Consensus 593 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 672 (790)
+...-+..|.+.-++.-|...++++.+ |- .+-.+ +--|.+..+..--.++.+-....+++.+..-..+++ +.
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiE----PI-QSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--ft 203 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIE----PI-QSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FT 203 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhh----hH-HhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hh
Confidence 344456667777777777766666552 21 11122 223555555544445555445555665555555554 56
Q ss_pred hcCCHHHHHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 003872 673 KMGRADLASTILDKLMKQGG-----------GYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEV 741 (790)
Q Consensus 673 ~~g~~~~A~~~~~~~~~~~~-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 741 (790)
..||...|+..++.-....| -.|.+.....|+..|.+ +++++|.+++.++-+.|+.|... .+++.++
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Di-i~~~FRv 281 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDI-ITTLFRV 281 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHH-HHHHHHH
Confidence 77888888888877654432 24677777777876655 68999999999999999987653 3445455
Q ss_pred Hhc
Q 003872 742 NGK 744 (790)
Q Consensus 742 ~~~ 744 (790)
+-.
T Consensus 282 ~K~ 284 (333)
T KOG0991|consen 282 VKN 284 (333)
T ss_pred HHh
Confidence 433
No 321
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.15 E-value=78 Score=30.63 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMG 653 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 653 (790)
++-....|..+|.+.+|.++.+..+... +.+...|-.||..+...||--.|..-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4455577778888888888888887776 6677777888888888888777776666654
No 322
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=75.92 E-value=34 Score=28.13 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=57.3
Q ss_pred chhhHHHHHHHHHhcCCcc--hHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLE--EVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSV 160 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~--~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (790)
+.+.|+.--..+......| +..+-+++....++.|++......+++|.+.+++..|+++|+-++.. +.+....|-.+
T Consensus 46 t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 46 TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYY 124 (149)
T ss_pred cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHH
Confidence 5556666555665544444 45667777888899999999999999999999999999999988754 22333345554
Q ss_pred HH
Q 003872 161 LV 162 (790)
Q Consensus 161 l~ 162 (790)
+.
T Consensus 125 v~ 126 (149)
T KOG4077|consen 125 VK 126 (149)
T ss_pred HH
Confidence 43
No 323
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.63 E-value=1.6e+02 Score=34.02 Aligned_cols=39 Identities=10% Similarity=-0.035 Sum_probs=22.3
Q ss_pred HHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhc
Q 003872 209 ALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGC 248 (790)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 248 (790)
.|......+-++..++.+.. ..-.++....+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~-~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLIS-DNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhH-hccccchHHHHHHHHHHHH
Confidence 34455566666677777665 2223355556666666654
No 324
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=74.50 E-value=1.5e+02 Score=32.97 Aligned_cols=94 Identities=10% Similarity=-0.091 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003872 308 THRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLF 387 (790)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~ 387 (790)
.|..-+..+..+++.. ...++.+..+-...+......++..|.+.|-.+.+.++.+.+-.+-. ...-|..-+..+.
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ 449 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFI 449 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHH
Confidence 3444444444333222 33344443332223445556666777777777777777766554321 2234556666667
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 003872 388 RNGRAEAAYTLFCDLKKK 405 (790)
Q Consensus 388 ~~~~~~~a~~~~~~~~~~ 405 (790)
+.|+...+..+...+.+.
T Consensus 450 ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 450 RAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp ------------------
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 777776666655555533
No 325
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=73.41 E-value=12 Score=22.15 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 003872 121 TFKLLLEPCIKSGKIDFAIEILDYMEEL 148 (790)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 148 (790)
.+..+...+...|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4455566666666666666666666654
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.34 E-value=5.1 Score=23.61 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=11.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh
Q 003872 738 LIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 738 l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
+..++.+.|++++|.+.++++.+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33444445555555555555543
No 327
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=73.10 E-value=1.6e+02 Score=32.95 Aligned_cols=198 Identities=13% Similarity=0.090 Sum_probs=109.4
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhh-CCCCC--CHHHHHHHHHHHH-hcCChHHHHHHHHHHHHhCCCCCHH---
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQE-DDVVV--DSETFKLLLEPCI-KSGKIDFAIEILDYMEELGTSLSPN--- 155 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~-~~~~~--~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~--- 155 (790)
....|..+|. .|++.++.+.+ ...+| ...++..+...+. ...+++.|+..+.+....--.++-.
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 4455666653 44555666653 22222 2345666777766 6688999999998775542222211
Q ss_pred --HHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHH-HHHHHhccchHHHHHHHHHHHhcCC-
Q 003872 156 --VYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNEL-LVALRKSDRRSEFKQVFERLKEQKE- 231 (790)
Q Consensus 156 --~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~- 231 (790)
+...++..+.+.+... |...+++.++...... ..+-...|.-+ +..+...+++..|.+.++.+.....
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~-------~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~ 171 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG-------HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQ 171 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC-------chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhh
Confidence 2345566666666665 8888888877643211 11112223333 2222233788888888888776432
Q ss_pred -CCCchhhHHHHHHHHh--ccCChHHHHHHHHHHHHCC---------CCCCHhHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 003872 232 -FEFDIYGYNICIHAFG--CWGDLHTSLRLFKEMKEKG---------LVPDLHTYNSLIQVLC--VVGKVKDALIVWEEL 297 (790)
Q Consensus 232 -~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g---------~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 297 (790)
..|-...+-.++.+.. +.+..+++.+.++.+.... ..|...+|..+++.++ ..|+++.+...++++
T Consensus 172 ~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 172 RGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333444444444433 4455666777776663321 1234556666666555 466666666655544
No 328
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=73.01 E-value=1.2 Score=38.69 Aligned_cols=87 Identities=11% Similarity=0.153 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003872 631 SMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKA 710 (790)
Q Consensus 631 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 710 (790)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++. . +..-...++..|-+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~---~-----~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT---S-----NNYDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS---S-----SSS-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc---c-----cccCHHHHHHHHHhc
Confidence 35667777888888888888888776666788888888888888777777777761 1 113334567777888
Q ss_pred CCHHHHHHHHHHHHh
Q 003872 711 GRFDEANMLFEQMRT 725 (790)
Q Consensus 711 g~~~~A~~~~~~m~~ 725 (790)
|.+++|.-++.++-.
T Consensus 84 ~l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGN 98 (143)
T ss_dssp TSHHHHHHHHHCCTT
T ss_pred chHHHHHHHHHHccc
Confidence 888888887776543
No 329
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.72 E-value=26 Score=28.77 Aligned_cols=47 Identities=11% Similarity=0.146 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 715 EANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 715 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
+..+-+..+....+.|++.+....+.+|.|.+++.-|.++++.++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45566777777788999999999999999999999999999988754
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.69 E-value=1.4e+02 Score=32.28 Aligned_cols=131 Identities=21% Similarity=0.197 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003872 273 TYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMF 352 (790)
Q Consensus 273 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 352 (790)
..+.+.+.+.+.|-.++|+++ .+|.... .....+.|+++.|.++..+.. +..-|..|-++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 344555555566666666554 2222211 122334566666666554432 4455677777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 003872 353 KSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALR 432 (790)
Q Consensus 353 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 432 (790)
..+++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |....+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHH
Confidence 77777777766655433 344555555566655555555555544432 233344556677777666
Q ss_pred HHHH
Q 003872 433 LVEE 436 (790)
Q Consensus 433 ~~~~ 436 (790)
++..
T Consensus 743 lLi~ 746 (794)
T KOG0276|consen 743 LLIS 746 (794)
T ss_pred HHHh
Confidence 6544
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.60 E-value=1.8e+02 Score=32.64 Aligned_cols=169 Identities=15% Similarity=0.083 Sum_probs=96.8
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDDVVV---DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLV 165 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 165 (790)
--|+.+.+.+.+++|+++.+.-... .| ........|.-+.-.|++++|-...-.|.. .+..-|...+..+.
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFA 434 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhc
Confidence 3467788889999999888765443 22 345677788888888999999988888764 35556666666776
Q ss_pred hcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 003872 166 RKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHA 245 (790)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 245 (790)
..++......++-. .+...+...|..++..+.. .+. ...++...+ ++++.+.-..++.+
T Consensus 435 e~~~l~~Ia~~lPt--------------~~~rL~p~vYemvLve~L~-~~~---~~F~e~i~~---Wp~~Lys~l~iisa 493 (846)
T KOG2066|consen 435 ELDQLTDIAPYLPT--------------GPPRLKPLVYEMVLVEFLA-SDV---KGFLELIKE---WPGHLYSVLTIISA 493 (846)
T ss_pred cccccchhhccCCC--------------CCcccCchHHHHHHHHHHH-HHH---HHHHHHHHh---CChhhhhhhHHHhh
Confidence 66665443322110 0122345667777777766 222 223333332 23333222222222
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 246 FGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELK 298 (790)
Q Consensus 246 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 298 (790)
-- .+..+. .-+...-..|+..|...+++..|++++-...
T Consensus 494 ~~------------~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 494 TE------------PQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred cc------------hHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 10 111111 1122223337788888888888888877765
No 332
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.05 E-value=82 Score=28.60 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=49.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 003872 635 SFVKKGYFNQAWGVLNEMGEKFCPTDI-----ATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD-VVMYNTLINVLG 708 (790)
Q Consensus 635 ~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 708 (790)
-+.++|++++|..-|..++.. +++.. +.|..-..++.+.+.++.|+.-..+.++.+ |+ ......-..+|-
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~---pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN---PTYEKALERRAEAYE 179 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---chhHHHHHHHHHHHH
Confidence 466777777777777777765 33322 223333345566667777766666666543 22 122222234556
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 003872 709 KAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~~ 726 (790)
+...+++|+.=|.++.+.
T Consensus 180 k~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 666667777766666653
No 333
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=70.97 E-value=6.2 Score=22.00 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=9.7
Q ss_pred HHHHHHhccCCHHHHHHHH
Q 003872 737 TLIEVNGKAGRLKEAHYFL 755 (790)
Q Consensus 737 ~l~~~~~~~g~~~~A~~~~ 755 (790)
.+..++...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555544
No 334
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=70.59 E-value=1.1e+02 Score=29.82 Aligned_cols=137 Identities=13% Similarity=0.126 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003872 321 RMDDAMKIFSEMQY-NGLIPDTVVYNSLLNGMFK-SR-KVMEACQLFEKMVQD-GVRTSCWTHNILIDGLFRNGRAEAAY 396 (790)
Q Consensus 321 ~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~-~~-~~~~a~~l~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~ 396 (790)
.+.+|+++|+.... ..+.-|..+...+++.... .+ ....-.++.+-+... +-.++..+...++..+++.+++..-+
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666653221 2344566777777776665 22 222222333333322 34567777888889999999999988
Q ss_pred HHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH-----HHhCCCccCHHHHHHHHHHHH
Q 003872 397 TLFCDLKKK-GKFVDGITFSIVVLQLCREGQIEEALRLVEE-----MEGRGFVVDLVTISSLLIGFH 457 (790)
Q Consensus 397 ~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-----m~~~~~~~~~~~~~~l~~~~~ 457 (790)
++|...... +..-|...|..+|....+.|+..-...+.++ +.+.++..+...-..+-..+.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 888877666 5556888899999999999988877777665 244566666665555544443
No 335
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.83 E-value=14 Score=27.50 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=31.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHhccCCHHHHHHHHH
Q 003872 709 KAGRFDEANMLFEQMRTSGINPD--VVTFNTLIEVNGKAGRLKEAHYFLK 756 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 756 (790)
...+.++|+..|....+.-..|. ..++..|+.+|+..|++++++++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777776422222 4566777778888888777766543
No 336
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.83 E-value=97 Score=29.86 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=36.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 003872 633 MSSFVKKGYFNQAWGVLNEMGEK--FCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK- 709 (790)
Q Consensus 633 i~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 709 (790)
|.+++..+++.+++...-+--.. .++|.+ ...-|-.|.+.|.+..+.++-..-.... ..-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p-~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDP-SNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCc-ccCCchhhHHHHHHHHHH
Confidence 44455555555554433322211 123222 2222333555555555555554444332 12222334444444433
Q ss_pred ----cCCHHHHHHHH
Q 003872 710 ----AGRFDEANMLF 720 (790)
Q Consensus 710 ----~g~~~~A~~~~ 720 (790)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 35555555554
No 337
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.71 E-value=2.1e+02 Score=32.71 Aligned_cols=165 Identities=14% Similarity=0.037 Sum_probs=91.6
Q ss_pred HHcCChHHHHHHHHHHHhC----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH-----HHHH
Q 003872 602 LAKGKLNLACKLFEIFTDM----GVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI-----QGLG 672 (790)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-----~~~~ 672 (790)
...|+++.|.++.+...+. -..+....+..+..+..-.|++++|..+..+..+..-..+...+..+. ..+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3457888888777665443 234455667777788888999999988888766543333444333222 2345
Q ss_pred hcCC--HHHHHHHHHHHHHhCC-CC----CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCChHHH--HHHHHHH
Q 003872 673 KMGR--ADLASTILDKLMKQGG-GY----LDVVMYNTLINVLGKA-GRFDEANMLFEQMRTSGINPDVVTF--NTLIEVN 742 (790)
Q Consensus 673 ~~g~--~~~A~~~~~~~~~~~~-~~----p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~--~~l~~~~ 742 (790)
..|. +.+....|........ -+ +-..+...+..++.+. +...++..-+.........|-...+ ..|+...
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~ 628 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELE 628 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHH
Confidence 5663 3333334443333210 11 2233444555555542 2233333333333333223322222 3677888
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCC
Q 003872 743 GKAGRLKEAHYFLKMMLDSGCTPN 766 (790)
Q Consensus 743 ~~~g~~~~A~~~~~~m~~~~~~p~ 766 (790)
...|++++|...+.++......+.
T Consensus 629 ~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 629 FLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCC
Confidence 889999999999999876544443
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.77 E-value=42 Score=30.84 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHH
Q 003872 344 YNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKG--KFVDGITFSIVVLQ 420 (790)
Q Consensus 344 ~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~ 420 (790)
.+..+..+.+.+.+.+++.+.++-++.+ +.+..+-..++..+|-.|++++|..-++-.-... ..+-...|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455666777788888888777766654 3455566677788888888888877666555442 22334455555554
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.71 E-value=15 Score=23.87 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=13.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 003872 417 VVLQLCREGQIEEALRLVEEMEGR 440 (790)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~m~~~ 440 (790)
+..+|...|+.+.|..+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
No 340
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.25 E-value=1.3e+02 Score=29.30 Aligned_cols=58 Identities=10% Similarity=0.082 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 275 NSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQ 333 (790)
Q Consensus 275 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 333 (790)
+.....|..+|.+.+|.++.+...... +.+...+-.++..+...|+--.+.+-++.+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344556666777777777777766554 5566666677777777777666665555553
No 341
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.93 E-value=1e+02 Score=28.03 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=25.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 706 VLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 706 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
.....|.+++|+..++.....++.+ .....-.+++...|+-++|+.-|++..+.
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3444455555555555554432221 11223334555555555555555555544
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.72 E-value=12 Score=24.24 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=18.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhC
Q 003872 124 LLLEPCIKSGKIDFAIEILDYMEELG 149 (790)
Q Consensus 124 ~li~~~~~~~~~~~a~~~~~~~~~~~ 149 (790)
.+..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35677777777777777777777543
No 343
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.36 E-value=63 Score=25.49 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=19.9
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 671 LGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 671 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
+.+.|++++|..+.+.. ..||...|.+|- -.+.|..+++..-+.+|..
T Consensus 49 LmNrG~Yq~Al~l~~~~-----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL-----CYPDLEPWLALC--EWRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHccchHHHHHHhcCCC-----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 33444444444444332 234444444432 2233444444444444433
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=66.32 E-value=15 Score=21.76 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=18.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 734 TFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 734 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
+|..+...|...|++++|.+.+++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666777777777777777777654
No 345
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=65.75 E-value=85 Score=35.14 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------CCHHHHHHHHHHHH
Q 003872 642 FNQAWGVLNEMG-EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGY------------LDVVMYNTLINVLG 708 (790)
Q Consensus 642 ~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------------p~~~~~~~li~~~~ 708 (790)
.++....+.... +.|+..+......++... .|++..|+.+++++...+... .+......|+.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 344455555443 446666766666666543 588888888887766532111 11222223333333
Q ss_pred hcCCHHHHHHHHHHHHhcCCC
Q 003872 709 KAGRFDEANMLFEQMRTSGIN 729 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~~g~~ 729 (790)
. |+...++.+++++...|+.
T Consensus 258 ~-~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAVG 277 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCCC
Confidence 3 5556666666666655544
No 346
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=65.64 E-value=17 Score=21.47 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 689 (790)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555566666666666665554
No 347
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.01 E-value=1.4e+02 Score=28.79 Aligned_cols=92 Identities=5% Similarity=0.018 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCc
Q 003872 121 TFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGC 200 (790)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (790)
....-|++++..+++.++..+.-+--..--+.-+.+...=|-.|.+.+.+..+.++-...+.... .-+.
T Consensus 85 LcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-----------Nq~l 153 (309)
T PF07163_consen 85 LCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-----------NQSL 153 (309)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-----------cCCc
Confidence 34556889999999999988876665543334456666667788999999999888877766421 1112
Q ss_pred chHHHHHHHH-----HhccchHHHHHHH
Q 003872 201 VACNELLVAL-----RKSDRRSEFKQVF 223 (790)
Q Consensus 201 ~~~~~ll~~~-----~~~~~~~~a~~~~ 223 (790)
..|..++..| .=.|.+++|+++.
T Consensus 154 p~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 154 PEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred hhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 2244444433 3356666666655
No 348
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.92 E-value=54 Score=28.16 Aligned_cols=86 Identities=12% Similarity=0.236 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhhCCC-----CCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHhCCCCCHHHHH
Q 003872 85 CTYSHIFRTVCRAGFLEEVPSLLNSMQEDDV-----VVDSETFKLLLEPCIKSGK-IDFAIEILDYMEELGTSLSPNVYD 158 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~-----~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 158 (790)
...|+++.-+...+++...+.+++.+..... ..+...|..++.+.+.... --.+..+|..|.+.+.+.++..|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4467888888888999999999988854321 2356789999999977666 556788999999888899999999
Q ss_pred HHHHHHHhcCCh
Q 003872 159 SVLVSLVRKKQL 170 (790)
Q Consensus 159 ~ll~~~~~~~~~ 170 (790)
.++.++.+....
T Consensus 120 ~li~~~l~g~~~ 131 (145)
T PF13762_consen 120 CLIKAALRGYFH 131 (145)
T ss_pred HHHHHHHcCCCC
Confidence 999998776433
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=63.09 E-value=2.8e+02 Score=31.77 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCC----CHHHHHHHHH--HHHhcCCHHHHHHHHHH
Q 003872 631 SMMSSFVKKGYFNQAWGVLNEMGEKFCPT----DIATYNVVIQ--GLGKMGRADLASTILDK 686 (790)
Q Consensus 631 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~li~--~~~~~g~~~~A~~~~~~ 686 (790)
.|+..+...|++++|...+.++......+ +...-...+. .....|+.+.|.....+
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 56777788899999988888876553332 2222122222 23456777777666654
No 350
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=62.96 E-value=17 Score=21.22 Aligned_cols=26 Identities=27% Similarity=0.161 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHh
Q 003872 123 KLLLEPCIKSGKIDFAIEILDYMEEL 148 (790)
Q Consensus 123 ~~li~~~~~~~~~~~a~~~~~~~~~~ 148 (790)
-.+..++.+.|++++|.+.|+++.+.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455556666666666666666654
No 351
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=62.78 E-value=1.8e+02 Score=29.41 Aligned_cols=123 Identities=11% Similarity=-0.004 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHH
Q 003872 607 LNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK---MGRADLASTI 683 (790)
Q Consensus 607 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~ 683 (790)
.+.-+.++++.++.+ +.+...+-.+|..+.+..+.++..+.|+++.... +-+...|...++.... .-.++....+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 345567888887774 5677778888999999999999999999999873 3367788877776543 2346666666
Q ss_pred HHHHHHhC-----CC----CCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC
Q 003872 684 LDKLMKQG-----GG----YLDVV-------MYNTLINVLGKAGRFDEANMLFEQMRTSGI-NPD 731 (790)
Q Consensus 684 ~~~~~~~~-----~~----~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~ 731 (790)
|.+.+..- +. .+-.. .+.-+...+..+|..+.|..+++.+.+.++ .|.
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 66654431 01 01111 222223334578999999999999998544 444
No 352
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.82 E-value=3.1e+02 Score=31.86 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHH-HH-HHH--HHHHhcCChHHHHHHHHHHHH
Q 003872 87 YSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSET-FK-LLL--EPCIKSGKIDFAIEILDYMEE 147 (790)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~-~~-~li--~~~~~~~~~~~a~~~~~~~~~ 147 (790)
+..-+..+.+.++|++|..+-+.....+..-...+ +. .+. --+..++++++|.+.|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 77788888888899999988876554321111111 11 111 224577999999999998864
No 353
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=61.68 E-value=37 Score=23.16 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=21.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhHHH
Q 003872 737 TLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTLD 774 (790)
Q Consensus 737 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l~ 774 (790)
.+.-++.+.|++++|.++++.+++. .|+......|.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHH
Confidence 3455667777777777777777743 67665544443
No 354
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.36 E-value=1.4e+02 Score=27.71 Aligned_cols=54 Identities=9% Similarity=-0.014 Sum_probs=26.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003872 125 LLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFK 179 (790)
Q Consensus 125 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 179 (790)
-++.+.+.+...+++.+.+.-++.. +.+...-..+++.||-.|++++|...++-
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 3444444455555555555444433 12334455555555555555555544443
No 355
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=61.14 E-value=1.2e+02 Score=34.48 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------CCHHHHHHHHHHHH
Q 003872 642 FNQAWGVLNEMG-EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGY------------LDVVMYNTLINVLG 708 (790)
Q Consensus 642 ~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------------p~~~~~~~li~~~~ 708 (790)
.++..+.+++.. +.|+..+......+.. ...|++..|+.+++++...++.. .|...+..++.++
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL- 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL- 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 455566666654 3466666665555543 34688888988887766543111 1222233333322
Q ss_pred hcCCHHHHHHHHHHHHhcCCC
Q 003872 709 KAGRFDEANMLFEQMRTSGIN 729 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~~g~~ 729 (790)
..|+..+++.+++++...|+.
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 257 AAGDGPEILAVADEMALRSLS 277 (830)
T ss_pred HcCCHHHHHHHHHHHHHhCCC
Confidence 235556666666666555543
No 356
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.82 E-value=2.5e+02 Score=30.26 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=35.1
Q ss_pred HHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHH
Q 003872 91 FRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCI-KSGKIDFAIEILDYMEE 147 (790)
Q Consensus 91 ~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~ 147 (790)
+..+.++|.+..|++.-+-+...+..-|+.....+|..|+ +..++.-.+++++....
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3345566777777777766666654445666666666665 55666666666666543
No 357
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=59.58 E-value=71 Score=28.54 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003872 643 NQAWGVLNEMGEKFCPTDI-ATYNVVIQGLGKMGR-----------ADLASTILDKLMKQGGGYLDVVMYNTLINVLGKA 710 (790)
Q Consensus 643 ~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~-----------~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 710 (790)
++|+.-|++.+.. .|+. .++..+..+|...+. +++|...|+++... .|+...|+.-+....
T Consensus 52 edAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 52 EDAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE---DPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHH--
Confidence 3444445555543 4543 566667666655432 45566666666654 588888887776653
Q ss_pred CCHHHHHHHHHHHHhcC
Q 003872 711 GRFDEANMLFEQMRTSG 727 (790)
Q Consensus 711 g~~~~A~~~~~~m~~~g 727 (790)
+|-.+..++.+.+
T Consensus 125 ----kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 ----KAPELHMEIHKQG 137 (186)
T ss_dssp ----THHHHHHHHHHSS
T ss_pred ----hhHHHHHHHHHHH
Confidence 3566666665543
No 358
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.33 E-value=1.7e+02 Score=27.99 Aligned_cols=27 Identities=7% Similarity=0.092 Sum_probs=18.3
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHH
Q 003872 238 GYNICIHAFGCWGDLHTSLRLFKEMKE 264 (790)
Q Consensus 238 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 264 (790)
|-..|...|...|++.+..++++++.+
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777654
No 359
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=58.37 E-value=2e+02 Score=28.49 Aligned_cols=154 Identities=10% Similarity=-0.040 Sum_probs=100.6
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc------
Q 003872 605 GKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVK----KGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKM------ 674 (790)
Q Consensus 605 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~------ 674 (790)
.+..+|..+|....+.|.. .....|...|.. ..+..+|...++++.+.|..+-......+...|...
T Consensus 91 ~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 91 RDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred ccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 4688899999988777643 333335555554 348999999999999998765423334444444432
Q ss_pred -CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC---
Q 003872 675 -GRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK----AGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAG--- 746 (790)
Q Consensus 675 -g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g--- 746 (790)
-+...|...+.++...+ +......+...|.. ..+.++|...|....+.|. ......+. .+...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~ 239 (292)
T COG0790 168 AYDDKKALYLYRKAAELG----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGV 239 (292)
T ss_pred cHHHHhHHHHHHHHHHhc----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCc
Confidence 13347999999988875 44444444444433 3488999999999998875 22222333 455444
Q ss_pred ------------CHHHHHHHHHHHHhCCCCCCccc
Q 003872 747 ------------RLKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 747 ------------~~~~A~~~~~~m~~~~~~p~~~t 769 (790)
+...|..++......|.......
T Consensus 240 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 274 (292)
T COG0790 240 KKAAFLTAAKEEDKKQALEWLQKACELGFDNACEA 274 (292)
T ss_pred hhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHH
Confidence 77888888888887766655444
No 360
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.19 E-value=1.7e+02 Score=31.76 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=47.2
Q ss_pred HHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------CCHHHHHHHHHHHHh
Q 003872 643 NQAWGVLNEM-GEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGY------------LDVVMYNTLINVLGK 709 (790)
Q Consensus 643 ~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------------p~~~~~~~li~~~~~ 709 (790)
++....+... .+.|+..+......++.. ..|+...|..+++++...++.. ++......+++++.
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~- 257 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA- 257 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence 3333444433 345666666666555544 3588888888887766543111 12222333344333
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC
Q 003872 710 AGRFDEANMLFEQMRTSGINPD 731 (790)
Q Consensus 710 ~g~~~~A~~~~~~m~~~g~~p~ 731 (790)
.|+.+.+..++++|...|..|.
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 258 AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 3666777777777776665554
No 361
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.18 E-value=1.5e+02 Score=31.69 Aligned_cols=108 Identities=6% Similarity=0.035 Sum_probs=56.1
Q ss_pred HHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 643 NQAWGVLNEMG-EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFE 721 (790)
Q Consensus 643 ~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 721 (790)
++....++... ..|+..+......++. ...|+...|+.+++.+....+. ..++..+...+
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~---~it~~~V~~~l-------------- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDS---KLTGVKIRKMI-------------- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCC---CcCHHHHHHHh--------------
Confidence 34445555443 3466666666555543 3458888888888776543211 12222221111
Q ss_pred HHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhHHHH
Q 003872 722 QMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTLDF 775 (790)
Q Consensus 722 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l~~ 775 (790)
|+. +...+..++.++...+....|+.++.+|.+.|..|......++.+
T Consensus 244 -----g~~-~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~ 291 (484)
T PRK14956 244 -----GYH-GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEF 291 (484)
T ss_pred -----CCC-CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 222 344444555555554445567777777777766666555444433
No 362
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.10 E-value=46 Score=30.55 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=18.9
Q ss_pred CCCChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 728 INPDVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 728 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
..|+..+|..++.++...|+.++|.++..++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35555556566666666666666666555555
No 363
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=57.46 E-value=3.2e+02 Score=30.67 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=22.3
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhcc
Q 003872 203 CNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCW 249 (790)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 249 (790)
.=.+|-.+.++|.+++|.++.....+ ........+...+..|...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhC
Confidence 33455566666666666666644432 2333344445555555443
No 364
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.84 E-value=93 Score=24.60 Aligned_cols=82 Identities=23% Similarity=0.225 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHH
Q 003872 677 ADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLK 756 (790)
Q Consensus 677 ~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 756 (790)
-++|..|-+-+...+ -. ....--+-+..+...|++++|.++.+.+ ..||...|-+|.. .|.|..+.+...+.
T Consensus 21 HqEA~tIAdwL~~~~-~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 21 HQEANTIADWLHLKG-ES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHhcCC-ch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 456666665554332 11 2222222234567889999999998877 4899999977755 67888888888888
Q ss_pred HHHhCCCCCCc
Q 003872 757 MMLDSGCTPNH 767 (790)
Q Consensus 757 ~m~~~~~~p~~ 767 (790)
+|-..| .|..
T Consensus 93 rla~sg-~p~l 102 (115)
T TIGR02508 93 RLAASG-DPRL 102 (115)
T ss_pred HHHhCC-CHHH
Confidence 887665 4443
No 365
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=56.81 E-value=42 Score=22.32 Aligned_cols=34 Identities=12% Similarity=0.317 Sum_probs=22.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 003872 707 LGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIE 740 (790)
Q Consensus 707 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 740 (790)
..+.|-+.++..++++|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666677777777777777766666655543
No 366
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=56.49 E-value=58 Score=32.08 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=31.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003872 127 EPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLL 181 (790)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 181 (790)
..|.++|++++|+..|....... +.++..+..-..+|.+...+..|..-....+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 34566677777777766555432 1255566666666666666665555444443
No 367
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.97 E-value=30 Score=24.58 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=16.4
Q ss_pred ChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 731 DVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 731 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
|....-.+|.+|...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444455666666666666666666654
No 368
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=55.91 E-value=93 Score=30.77 Aligned_cols=55 Identities=13% Similarity=0.016 Sum_probs=27.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003872 598 LSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMG 653 (790)
Q Consensus 598 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 653 (790)
.+.|.+.|.+++|+..|....... +-+++++..-..+|.+...+..|..--...+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 445555555555555555444332 2255555555555555555555544444333
No 369
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.08 E-value=97 Score=32.68 Aligned_cols=15 Identities=20% Similarity=0.093 Sum_probs=6.4
Q ss_pred HHHHHhcCCHHHHHH
Q 003872 278 IQVLCVVGKVKDALI 292 (790)
Q Consensus 278 l~~~~~~~~~~~a~~ 292 (790)
+...+..|+.+.+..
T Consensus 72 L~~A~~~g~~~~v~~ 86 (413)
T PHA02875 72 LHDAVEEGDVKAVEE 86 (413)
T ss_pred HHHHHHCCCHHHHHH
Confidence 333444455444333
No 370
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.53 E-value=1.1e+02 Score=24.62 Aligned_cols=29 Identities=17% Similarity=0.199 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 694 YLDVVMYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 694 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
.||...|.+| +-.+.|-.+++...+.++.
T Consensus 68 ~pdL~p~~AL--~a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 68 YPDLEPWAAL--CAWKLGLASALESRLTRLA 96 (116)
T ss_dssp -GGGHHHHHH--HHHHCT-HHHHHHHHHHHC
T ss_pred CccHHHHHHH--HHHhhccHHHHHHHHHHHH
Confidence 3444444433 1234444444444444443
No 371
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=54.01 E-value=44 Score=36.96 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=29.1
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003872 104 PSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLL 181 (790)
Q Consensus 104 ~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 181 (790)
...++.+..+-+..+.....-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.++|+...+..+.+.++
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344443333333555566666667776766666666665544321 12235555555555665555554444443
No 372
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.98 E-value=1.4e+02 Score=27.17 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=8.6
Q ss_pred HHhcCCcchHHHHHHHhhh
Q 003872 94 VCRAGFLEEVPSLLNSMQE 112 (790)
Q Consensus 94 ~~~~~~~~~a~~l~~~~~~ 112 (790)
+.+.|++++|..-|...+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale 123 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALE 123 (271)
T ss_pred hhhcccHHHHHHHHHHHHH
Confidence 3444444444444444443
No 373
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.35 E-value=2e+02 Score=32.11 Aligned_cols=86 Identities=17% Similarity=0.251 Sum_probs=45.9
Q ss_pred HHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC------------CHHHHHHHHHHHH
Q 003872 642 FNQAWGVLNEM-GEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYL------------DVVMYNTLINVLG 708 (790)
Q Consensus 642 ~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p------------~~~~~~~li~~~~ 708 (790)
.++....+.+. .+.|+..+......++. ...|++..|+.+++++...++... +......+++++.
T Consensus 185 ~eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~ 262 (618)
T PRK14951 185 PETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA 262 (618)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34444444443 44577766666666665 345788888888876654431111 2222233333333
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC
Q 003872 709 KAGRFDEANMLFEQMRTSGINP 730 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~~g~~p 730 (790)
. |+...+.++++++...|..|
T Consensus 263 ~-~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 263 Q-GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred c-CCHHHHHHHHHHHHHcCCCH
Confidence 3 56666666666666655443
No 374
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.25 E-value=68 Score=29.40 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 693 GYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 693 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
..|+...|..++.++...|+.++|.++..++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4578888888888888888888888888877763
No 375
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.04 E-value=53 Score=21.83 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=22.2
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003872 130 IKSGKIDFAIEILDYMEELGTSLSPNVYDSVLV 162 (790)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (790)
.+.|-..++..++++|...|+..++..+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777777766666554
No 376
>PHA02875 ankyrin repeat protein; Provisional
Probab=52.95 E-value=3e+02 Score=28.97 Aligned_cols=11 Identities=0% Similarity=-0.176 Sum_probs=4.9
Q ss_pred HHHHHHHHHhC
Q 003872 610 ACKLFEIFTDM 620 (790)
Q Consensus 610 a~~~~~~~~~~ 620 (790)
+.+-++.|...
T Consensus 299 C~~ei~~mk~~ 309 (413)
T PHA02875 299 CIIELRRIKSE 309 (413)
T ss_pred HHHHHHHHHhh
Confidence 34444445443
No 377
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=52.71 E-value=1.5e+02 Score=28.74 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---
Q 003872 660 DIATYNVVIQGLGKMGRADLASTILDKLMKQG---GGYLDVVMYN-TLINVLGKAGRFDEANMLFEQMRTSGINPDV--- 732 (790)
Q Consensus 660 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--- 732 (790)
-...+..+..-|++.+|.+.+.+...+..++. |.+.|...-- .|.-.|....-.++-++..+.|.++|..-+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 34566777888999999988888877766543 2555543221 2222333344466777777788887654332
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 733 -VTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 733 -~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
.+|..+ -+....++.+|-.++-+..
T Consensus 194 yK~Y~Gi--~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 194 YKVYKGI--FKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHH--HHHHHHhhHHHHHHHHHHh
Confidence 222222 1223355777777776665
No 378
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.08 E-value=1.1e+02 Score=23.58 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=45.7
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003872 103 VPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAM 174 (790)
Q Consensus 103 a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 174 (790)
+.++++.+.+.|+. +......+-.+-...|+.+.|.+++..+. +| | ..|...+.++...|.-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhhh
Confidence 45677777777754 55555555544446688999999999888 65 2 36788888888877755543
No 379
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=51.83 E-value=27 Score=19.48 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=13.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 735 FNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 735 ~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
|..+...+...|++++|...++...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445555555555565655555554
No 380
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.68 E-value=2.2e+02 Score=27.17 Aligned_cols=201 Identities=13% Similarity=0.059 Sum_probs=121.4
Q ss_pred cCCCcchHHHHHHH-HHhccchHHHHHHHHHHHhcCCCCCc--hhhHHHHHHHHhccCChHHHHHHHHHHHHC---CC--
Q 003872 196 SLPGCVACNELLVA-LRKSDRRSEFKQVFERLKEQKEFEFD--IYGYNICIHAFGCWGDLHTSLRLFKEMKEK---GL-- 267 (790)
Q Consensus 196 ~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~-- 267 (790)
..|++..-|..-.. -.+...+++|+.-|+...+..|-+.+ ..+...+++.+.+.|++++....|.+|..- .+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 56666655544332 23456889999999998874443322 345667889999999999999999888531 11
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----
Q 003872 268 VPDLHTYNSLIQVLCVVGKVKDALIVWEELKGS-----GHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLI---- 338 (790)
Q Consensus 268 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---- 338 (790)
.-+..+.|++++......+.+-....++.-... +-..--.|-+-+...|...+.+.+..++++++....-.
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 234566788887777777766666655543211 00111123345666777777777777777777543111
Q ss_pred -------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH-----HHHcCCHHHHHH
Q 003872 339 -------PDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDG-VRTSCWTHNILIDG-----LFRNGRAEAAYT 397 (790)
Q Consensus 339 -------p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~~~~li~~-----~~~~~~~~~a~~ 397 (790)
.-..+|..=|.+|....+-.....+|++...-. --|.+.+.. +|+- ..+.|++++|..
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 112456667778877777777777777765432 224444333 3332 345667776643
No 381
>PRK09687 putative lyase; Provisional
Probab=51.21 E-value=2.5e+02 Score=27.61 Aligned_cols=186 Identities=11% Similarity=0.036 Sum_probs=87.3
Q ss_pred chhhHHHHHHHHhccCCh----HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCC
Q 003872 235 DIYGYNICIHAFGCWGDL----HTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGK-----VKDALIVWEELKGSGHEPN 305 (790)
Q Consensus 235 ~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~~~~ 305 (790)
|...-...+.++.+.|+. +++...+..+... .++..+-...+.++...+. ...+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 344444445555555542 3455556555333 3455555555555544332 1223333333222 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003872 306 EFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSR-KVMEACQLFEKMVQDGVRTSCWTHNILID 384 (790)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~l~~~~~~~~~~~~~~~~~~li~ 384 (790)
..+-...+.++.+.++ ..+...+-.+.+. +|..+-...+.++.+.+ +...+...+..+... ++...-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHH
Confidence 4555555666655554 3455555555542 34444444444444432 133444444444432 34555555666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003872 385 GLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEG 439 (790)
Q Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 439 (790)
++.+.++. .++..+-...+.+ + .....+.++...|.. .|...+..+.+
T Consensus 215 aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 215 GLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 66666663 3444444444432 1 123455555555553 45555555554
No 382
>PLN03025 replication factor C subunit; Provisional
Probab=51.02 E-value=2e+02 Score=29.00 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=52.6
Q ss_pred HHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhc
Q 003872 643 NQAWGVLNEM-GEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGG-----------GYLDVVMYNTLINVLGKA 710 (790)
Q Consensus 643 ~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~p~~~~~~~li~~~~~~ 710 (790)
++....+... .+.|+..+......++.. ..|+...|...++......+ ..+.......++... ..
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~--~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~-~~ 237 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFT--ADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC-LK 237 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH-Hc
Confidence 4445555544 345777777777777654 45889999888885432210 112222333444443 34
Q ss_pred CCHHHHHHHHHHHHhcCCCCCh
Q 003872 711 GRFDEANMLFEQMRTSGINPDV 732 (790)
Q Consensus 711 g~~~~A~~~~~~m~~~g~~p~~ 732 (790)
+++++|...+.+|...|..|..
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~~~ 259 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSPTD 259 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 6788888888888877777654
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=49.93 E-value=53 Score=24.60 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 003872 673 KMGRADLASTILDKLMKQGGGYLDV-VMYNTLINVLGKAGRFDEANML 719 (790)
Q Consensus 673 ~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 719 (790)
....-+.|+..|..++++..-.|+. .++-.++.+|+.-|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555543111111 1333445555555555555444
No 384
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=48.80 E-value=2.8e+02 Score=30.46 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHhCCCCCCHHHHHH
Q 003872 631 SMMSSFVKKGYFNQAWGVLNEMGEK--FCPTDIATYNVVIQGLGKMGRAD------LASTILDKLMKQGGGYLDVVMYNT 702 (790)
Q Consensus 631 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~p~~~~~~~ 702 (790)
+|+.+|..+|++-.+.++++..... |-+.-...+|..|+-..+.|.++ .|.++++... +.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~----ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR----LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh----cCCcchHHHH
Confidence 5556666666666666666655443 11222334555555555555432 3333333332 3335556655
Q ss_pred HHHHHH
Q 003872 703 LINVLG 708 (790)
Q Consensus 703 li~~~~ 708 (790)
|+.+-.
T Consensus 109 l~~~sl 114 (1117)
T COG5108 109 LCQASL 114 (1117)
T ss_pred HHHhhc
Confidence 554433
No 385
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.23 E-value=1e+02 Score=24.09 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=27.5
Q ss_pred HhcCCHHHHHHHHHHHHh----cCCCCC----hHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 708 GKAGRFDEANMLFEQMRT----SGINPD----VVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 708 ~~~g~~~~A~~~~~~m~~----~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
.+.|++.+|.+.+.+..+ .+.... ....-.+.......|++++|...+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 355666666555444443 111110 1222234455666778888877777765
No 386
>PF13934 ELYS: Nuclear pore complex assembly
Probab=46.95 E-value=1.1e+02 Score=28.96 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=12.0
Q ss_pred HHHHHHHhcCChhHHHHHHHH
Q 003872 159 SVLVSLVRKKQLGLAMSILFK 179 (790)
Q Consensus 159 ~ll~~~~~~~~~~~a~~~~~~ 179 (790)
.++.++...|+.+.|..+++.
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHh
Confidence 455555555666666655554
No 387
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.00 E-value=3.1e+02 Score=27.22 Aligned_cols=142 Identities=18% Similarity=0.145 Sum_probs=64.9
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH---
Q 003872 223 FERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK-GLVPDLHTYNSLIQVLCVVGKVKDALIVWEELK--- 298 (790)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--- 298 (790)
++.+.++..+..|...++.|..+- ...+++-.+..+...+. |-.--....-.....||+-|+.+.|++.+.+..
T Consensus 57 Ye~lce~~~i~~D~~~l~~m~~~n--eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~kt 134 (393)
T KOG0687|consen 57 YEYLCESLVIKLDQDLLNSMKKAN--EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKT 134 (393)
T ss_pred HHHHHhhcceeccHHHHHHHHHhh--HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 333333355555665555555431 12233333333333332 111122334445566777777777776665543
Q ss_pred -hCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 299 -GSGHEPNEFTHRIIIQGCC-KSYRMDDAMKIFSEMQYNGLIPDT----VVYNSLLNGMFKSRKVMEACQLFEKMV 368 (790)
Q Consensus 299 -~~g~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~l~~~~~ 368 (790)
..|.+.|...+.+-+..+. ...-+.+-++..+.+.+.|...+. .+|..+- +...+++.+|-.+|-+..
T Consensus 135 vs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 135 VSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred hhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 3355566555544444332 222233444444455555543322 2333322 223345666666665544
No 388
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=45.90 E-value=1.3e+02 Score=26.01 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=48.6
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChh
Q 003872 105 SLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLG 171 (790)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 171 (790)
++.+.+.+.|.++++. -..++..+...++.-.|.++|+++.+.++..+..+....+..+...|-+.
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 3455566677765553 34577777878788999999999999888888877777777777777543
No 389
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.84 E-value=1.3e+02 Score=23.20 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=16.1
Q ss_pred cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCc
Q 003872 424 EGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRW 462 (790)
Q Consensus 424 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 462 (790)
.|+.+.|.+++..+. + .+..|..++.++...|.-
T Consensus 49 ~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 49 HGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHH 82 (88)
T ss_pred cCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCch
Confidence 345555555555554 3 223444455555444443
No 390
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.70 E-value=22 Score=29.70 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhcCCCCCh
Q 003872 714 DEANMLFEQMRTSGINPDV 732 (790)
Q Consensus 714 ~~A~~~~~~m~~~g~~p~~ 732 (790)
.+|-.+|+.|.+.|-+||.
T Consensus 112 ~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 112 TDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred CcHHHHHHHHHhCCCCCcc
Confidence 3344444444444444443
No 391
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.59 E-value=3.3e+02 Score=29.59 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=52.3
Q ss_pred HHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH------------HHHHHHHHHH
Q 003872 642 FNQAWGVLNEM-GEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVV------------MYNTLINVLG 708 (790)
Q Consensus 642 ~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~------------~~~~li~~~~ 708 (790)
.++....+... .+.|+..+......++.. ..|++..|...++++...+ ...+.. ....+++++
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~--s~GdlR~aln~Lekl~~~~-~~It~~~V~~~l~~~~~~~if~Li~al- 252 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARL--ADGAMRDAESLLERLLALG-TPVTRKQVEEALGLPPQERLRGIAAAL- 252 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHCCCcHHHHHHHHHHH-
Confidence 44555555554 345777777666666543 3588999998888876543 222211 122344444
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC
Q 003872 709 KAGRFDEANMLFEQMRTSGINPD 731 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~~g~~p~ 731 (790)
..++.++|..++.++...|..|.
T Consensus 253 ~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 253 AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHH
Confidence 44778888888888887775544
No 392
>PRK11619 lytic murein transglycosylase; Provisional
Probab=45.43 E-value=5e+02 Score=29.35 Aligned_cols=73 Identities=12% Similarity=-0.030 Sum_probs=39.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003872 278 IQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRK 356 (790)
Q Consensus 278 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 356 (790)
+..+.+.+++....+.+.. .+.+.........+....|+.++|......+-..|-. ....+..++..+.+.|.
T Consensus 106 l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 106 VNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCC
Confidence 3445556666655552211 1344444455666667777777676666666554422 34455666666655444
No 393
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.82 E-value=3.1e+02 Score=30.73 Aligned_cols=87 Identities=15% Similarity=0.189 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------CCHHHHHHHHHHHH
Q 003872 642 FNQAWGVLNEMG-EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGY------------LDVVMYNTLINVLG 708 (790)
Q Consensus 642 ~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------------p~~~~~~~li~~~~ 708 (790)
.++....+.... +.|+..+......++.. ..|++..|..+++++...++.. .+......++.+..
T Consensus 179 ~eEI~k~L~~Il~kEgI~id~eAL~~IA~~--S~GdLRdALnLLDQaIayg~g~IT~edV~~lLG~~d~e~IfdLldAI~ 256 (702)
T PRK14960 179 VDEITKHLGAILEKEQIAADQDAIWQIAES--AQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLIDRTIIYDLILAVH 256 (702)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhccCCHHHHHHHHHHHH
Confidence 344455555443 44666666666555543 4588888888887766543111 12222233344333
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC
Q 003872 709 KAGRFDEANMLFEQMRTSGINPD 731 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~~g~~p~ 731 (790)
+ ++..++.++++++...|..++
T Consensus 257 k-~d~~~al~~L~el~~~g~d~~ 278 (702)
T PRK14960 257 Q-NQREKVSQLLLQFRYQALDVS 278 (702)
T ss_pred h-cCHHHHHHHHHHHHHhCCCHH
Confidence 3 456666666666666555433
No 394
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=44.49 E-value=2.3e+02 Score=30.52 Aligned_cols=130 Identities=14% Similarity=0.001 Sum_probs=68.8
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 255 SLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQY 334 (790)
Q Consensus 255 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (790)
+-.++..|. ..+.|--...|...-...-.|+...|...+............+....+.....+.|-...|..++.+...
T Consensus 592 ~~~~~~~~~-~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~ 670 (886)
T KOG4507|consen 592 GSFLFHAIN-KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA 670 (886)
T ss_pred HHHHHHHhc-CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 344444443 2233333333333323334577777777666554332111222334445555555666667777766554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003872 335 NGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLF 387 (790)
Q Consensus 335 ~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~ 387 (790)
.. .....++..+-+++....+++.|++-|++..+.. .-+..+-+.|...-|
T Consensus 671 ~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 671 IN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred hc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 43 2344556667777777778888888887777653 223444455544444
No 395
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=44.48 E-value=98 Score=33.63 Aligned_cols=91 Identities=19% Similarity=0.262 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhcCCCCChHHHHHH
Q 003872 666 VVIQGLGKMGRADLASTILDKLMKQG-GGYLDVVMYNTLINVLGKAGRFD------EANMLFEQMRTSGINPDVVTFNTL 738 (790)
Q Consensus 666 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~~~l 738 (790)
+|..+|...|++-++.++++...... |-+.-...+|..|+-..+.|.++ .|..++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999998887653 22334567888888888888753 3444444444 56688888888
Q ss_pred HHHHhccCCHHHHHHHHHHHH
Q 003872 739 IEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 739 ~~~~~~~g~~~~A~~~~~~m~ 759 (790)
+.+-..--.-.-..-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776555333333344444444
No 396
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=43.71 E-value=2.5e+02 Score=25.32 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC----CH-------HHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 003872 677 ADLASTILDKLMKQGGGYLDV-VMYNTLINVLGKAG----RF-------DEANMLFEQMRTSGINPDVVTFNTLIEVNGK 744 (790)
Q Consensus 677 ~~~A~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g----~~-------~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 744 (790)
+++|+.-|++++.- .|+- .++..+..+|...+ +. ++|...|++..+ ..|+...|+.-+....
T Consensus 51 iedAisK~eeAL~I---~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~- 124 (186)
T PF06552_consen 51 IEDAISKFEEALKI---NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA- 124 (186)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH-
Confidence 45566666666664 4553 56666777765443 33 444444554444 5899999998888764
Q ss_pred cCCHHHHHHHHHHHHhCCCC
Q 003872 745 AGRLKEAHYFLKMMLDSGCT 764 (790)
Q Consensus 745 ~g~~~~A~~~~~~m~~~~~~ 764 (790)
.|-++..++.+.++.
T Consensus 125 -----kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 125 -----KAPELHMEIHKQGLG 139 (186)
T ss_dssp -----THHHHHHHHHHSSS-
T ss_pred -----hhHHHHHHHHHHHhh
Confidence 356666666555433
No 397
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.69 E-value=21 Score=29.78 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=25.6
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCccchhHH
Q 003872 741 VNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTL 773 (790)
Q Consensus 741 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 773 (790)
.+...|.-.+|..+|++|++.|-+||. |+.|
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~L 134 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDAL 134 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHH
Confidence 556667778899999999999999997 5455
No 398
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=42.26 E-value=66 Score=18.34 Aligned_cols=15 Identities=13% Similarity=0.344 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHHh
Q 003872 676 RADLASTILDKLMKQ 690 (790)
Q Consensus 676 ~~~~A~~~~~~~~~~ 690 (790)
+.+.|..+|++++..
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344445555554444
No 399
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=42.12 E-value=3.4e+02 Score=29.45 Aligned_cols=87 Identities=18% Similarity=0.243 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----C----------CCCHHHHHHHHH
Q 003872 642 FNQAWGVLNEMG-EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGG-----G----------YLDVVMYNTLIN 705 (790)
Q Consensus 642 ~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~----------~p~~~~~~~li~ 705 (790)
.++....++... +.|+..+......++.. ..|++..|...++++..-.+ + .++......|++
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ 266 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVE 266 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 344455555443 44666666666555543 45788888888887754321 1 122222333444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003872 706 VLGKAGRFDEANMLFEQMRTSGINPD 731 (790)
Q Consensus 706 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 731 (790)
+.. .|+.++|..+++++...|..|.
T Consensus 267 ai~-~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 267 YII-HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 333 3667777777777776665544
No 400
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.08 E-value=3.7e+02 Score=27.89 Aligned_cols=57 Identities=9% Similarity=0.131 Sum_probs=41.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHh--cCCHHHHHHHHHHHhhc
Q 003872 598 LSIFLAKGKLNLACKLFEIFTDMGVHPVNY--TYNSMMSSFVK--KGYFNQAWGVLNEMGEK 655 (790)
Q Consensus 598 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 655 (790)
+..+-+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455789999999999999876 555554 45555555543 67889999999987765
No 401
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.84 E-value=3.1e+02 Score=25.89 Aligned_cols=128 Identities=15% Similarity=0.190 Sum_probs=77.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003872 632 MMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG 711 (790)
Q Consensus 632 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 711 (790)
-|..|.+.-++.-|-...+++.+ | +.+ .+.+--|.+..+.+--.++.+-....+ +.-+..-..+++ +...|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiE----P-IQS-RCAiLRysklsd~qiL~Rl~~v~k~Ek-v~yt~dgLeaii--fta~G 206 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIE----P-IQS-RCAILRYSKLSDQQILKRLLEVAKAEK-VNYTDDGLEAII--FTAQG 206 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhh----h-HHh-hhHhhhhcccCHHHHHHHHHHHHHHhC-CCCCcchHHHhh--hhccc
Confidence 34455555555555444444333 1 111 122333556555555555554443333 555555555554 45678
Q ss_pred CHHHHHHHHHHHHh-cC-----------CCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 003872 712 RFDEANMLFEQMRT-SG-----------INPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 712 ~~~~A~~~~~~m~~-~g-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 769 (790)
+...|+..++.-.. .| -.|.+.....++..|.. +++++|.+++.++.+.|+.|....
T Consensus 207 DMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii 275 (333)
T KOG0991|consen 207 DMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDII 275 (333)
T ss_pred hHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHH
Confidence 98888888776553 22 25666677777776654 679999999999999999997655
No 402
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=41.62 E-value=1.3e+02 Score=26.00 Aligned_cols=60 Identities=23% Similarity=0.140 Sum_probs=29.9
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCC
Q 003872 401 DLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGR 461 (790)
Q Consensus 401 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 461 (790)
.+.+.|.+++.. -..++..+.+.++.-.|.++++++.+.+...+..|...-++.+...|-
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 334444443322 233444444444445555566666555555555555555555555554
No 403
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=40.56 E-value=4.6e+02 Score=27.58 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=20.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCccch
Q 003872 744 KAGRLKEAHYFLKMMLDSGCTPNHVTD 770 (790)
Q Consensus 744 ~~g~~~~A~~~~~~m~~~~~~p~~~t~ 770 (790)
+..++..|+++|+++.+.+-+..++|.
T Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (831)
T PRK15180 788 HLRDYTQALQYWQRLEKVNGPTEPVTR 814 (831)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcchHH
Confidence 446788999999999877656666664
No 404
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.33 E-value=75 Score=22.57 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=10.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 003872 667 VIQGLGKMGRADLASTILDKLM 688 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~ 688 (790)
+|.+|...|++++|.++++.+.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3444445555555544444443
No 405
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=40.11 E-value=1.7e+02 Score=24.81 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003872 682 TILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGI 728 (790)
Q Consensus 682 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 728 (790)
...+...+.|...+|.+....|+. +...|+++.|+++.+-+.+.|.
T Consensus 34 p~v~g~L~~g~g~qd~Vl~~~mvW-~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 34 PWVEGVLASGSGAQDDVLMTVMVW-LFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred HHHHHHHHcCCCCcCchHHhhHhh-hhcccCHHHHHHHHHHHHHcCC
Confidence 344444554444455554444443 4566777777777777776654
No 406
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=39.94 E-value=4.9e+02 Score=27.73 Aligned_cols=91 Identities=9% Similarity=0.059 Sum_probs=61.0
Q ss_pred hhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHH
Q 003872 66 KLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLL-LEPCIKSGKIDFAIEILDY 144 (790)
Q Consensus 66 al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~ 144 (790)
-+.+|+-+-. .+..++..|...+.-+-+.+.+.++-.++..|...++ -++..|... ..-|...-.++.|..+|.+
T Consensus 90 Iv~lyr~at~---rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp-~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 90 IVFLYRRATN---RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHP-NNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHH---hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 3445554422 2456889999888877788889999999999998753 245555433 3344455559999999999
Q ss_pred HHHhCCCCCHHHHHHHH
Q 003872 145 MEELGTSLSPNVYDSVL 161 (790)
Q Consensus 145 ~~~~~~~~~~~~~~~ll 161 (790)
..+.+. .++..|-..+
T Consensus 166 gLR~np-dsp~Lw~eyf 181 (568)
T KOG2396|consen 166 GLRFNP-DSPKLWKEYF 181 (568)
T ss_pred HhhcCC-CChHHHHHHH
Confidence 888753 3444444433
No 407
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.42 E-value=5e+02 Score=29.23 Aligned_cols=85 Identities=13% Similarity=0.142 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC------------CHHHHHHHHHHHH
Q 003872 642 FNQAWGVLNEMG-EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYL------------DVVMYNTLINVLG 708 (790)
Q Consensus 642 ~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p------------~~~~~~~li~~~~ 708 (790)
.++..+.+.+.. +.|+..+......++ -...|++..|+.+++.....++... +...+..++..+.
T Consensus 185 ~eei~~~L~~Il~~Egi~~d~eAL~~IA--~~A~Gs~RdALsLLdQaia~~~~~It~~~V~~~LG~~d~~~i~~Ll~aL~ 262 (700)
T PRK12323 185 PGHIVSHLDAILGEEGIAHEVNALRLLA--QAAQGSMRDALSLTDQAIAYSAGNVSEEAVRGMLGAIDQSYLVRLLDALA 262 (700)
T ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345555555443 446666665554443 3356888899988887665432222 2223344444443
Q ss_pred hcCCHHHHHHHHHHHHhcCCC
Q 003872 709 KAGRFDEANMLFEQMRTSGIN 729 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~~g~~ 729 (790)
.++..++..+.+++...|..
T Consensus 263 -~~d~~~~l~l~~~l~~~G~d 282 (700)
T PRK12323 263 -AEDGAALLAIADEMAGRSLS 282 (700)
T ss_pred -cCCHHHHHHHHHHHHHcCCC
Confidence 46677777777776666554
No 408
>PRK10941 hypothetical protein; Provisional
Probab=39.15 E-value=3.5e+02 Score=26.44 Aligned_cols=58 Identities=17% Similarity=-0.005 Sum_probs=30.0
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHC
Q 003872 206 LLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK 265 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 265 (790)
+-..|.+.++++.|..+.+.+..- .|.+..-+.--.-.|.+.|.+..|..=++...+.
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 445555566666666666655541 1222333444444455666666666655555443
No 409
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=39.14 E-value=1.2e+02 Score=27.18 Aligned_cols=55 Identities=11% Similarity=0.034 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCH
Q 003872 693 GYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL 748 (790)
Q Consensus 693 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 748 (790)
++++..-. .++..+...++.-.|.++++.+.+.+..++..|..--++.+...|-+
T Consensus 22 lR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 22 VRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 44444433 23333333344445566666665555444544433444555555543
No 410
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=38.37 E-value=2.5e+02 Score=23.88 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC-CCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 695 LDVVMYNTLINVLGKAGR---FDEANMLFEQMRTSG-INPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 695 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
++..+-..+..++.++.+ +.+...+++...... -.-.....-.|.-++.|.+++++++++++.+.+. .||..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n~ 105 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNNR 105 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCcH
Confidence 444444445555555433 444555566555411 1111233334445666666666666666666643 55543
No 411
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=38.34 E-value=2.2e+02 Score=23.14 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=17.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHH
Q 003872 238 GYNICIHAFGCWGDLHTSLRLFKEMKE 264 (790)
Q Consensus 238 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 264 (790)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355666666666666666666666655
No 412
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.27 E-value=2.4e+02 Score=23.65 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 679 LASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFE 721 (790)
Q Consensus 679 ~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 721 (790)
.+.++|+.|..++=..--...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444443122233344444444444444444444444
No 413
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.20 E-value=2.4e+02 Score=23.64 Aligned_cols=58 Identities=12% Similarity=0.044 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003872 121 TFKLLLEPCIKSGKIDFAIEILDYMEELGTSL-SPNVYDSVLVSLVRKKQLGLAMSILFKL 180 (790)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 180 (790)
-|..+=-.|++.- ..+.++|..|...|+.. .+..|......+...|++++|.++|..-
T Consensus 67 RylkiWi~ya~~~--~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 67 RYLKIWIKYADLS--SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHTTB--SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3444444444433 39999999999988754 4456899999999999999999998753
No 414
>PRK10941 hypothetical protein; Provisional
Probab=37.46 E-value=4e+02 Score=26.00 Aligned_cols=66 Identities=9% Similarity=-0.060 Sum_probs=31.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH
Q 003872 632 MMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVV 698 (790)
Q Consensus 632 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 698 (790)
|-.+|.+.++++.|+...+.+.... +.|+.-+.--.-.|.+.|.+..|..=++..++..+-.|+..
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 4444555555555555555555542 22333333333345555555555555555555443333333
No 415
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=37.42 E-value=4.1e+02 Score=26.14 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHcCCHHHH
Q 003872 413 TFSIVVLQLCREGQIEEA 430 (790)
Q Consensus 413 ~~~~ll~~~~~~g~~~~a 430 (790)
+|..|+.+++..|+.+..
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 455566666666655543
No 416
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=37.28 E-value=2.9e+02 Score=32.23 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHH
Q 003872 642 FNQAWGVLNEMG-EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNT---------------LIN 705 (790)
Q Consensus 642 ~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~---------------li~ 705 (790)
.+....++.++. +.|+..+...+..++... .|++..++..++++... .....+++.. +++
T Consensus 181 ~~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~--~~~~~IT~e~V~allg~~~~~~I~~lid 256 (824)
T PRK07764 181 PEVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAG--AGPEGVTYERAVALLGVTDSALIDEAVD 256 (824)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhh--cCCCCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 444455555543 446666666666555443 47888888888887643 1122233322 222
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 003872 706 VLGKAGRFDEANMLFEQMRTSGIN 729 (790)
Q Consensus 706 ~~~~~g~~~~A~~~~~~m~~~g~~ 729 (790)
+.. .|+...+..+++++.+.|..
T Consensus 257 AL~-~~D~a~al~~l~~Li~~G~d 279 (824)
T PRK07764 257 ALA-AGDGAALFGTVDRVIEAGHD 279 (824)
T ss_pred HHH-cCCHHHHHHHHHHHHHcCCC
Confidence 222 35566666666666655544
No 417
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=37.11 E-value=4.5e+02 Score=26.41 Aligned_cols=80 Identities=18% Similarity=0.297 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCChH-H
Q 003872 665 NVVIQGLGKMGRADLASTILDKLMKQGG--GYLDVVMYN--TLINVLGKAGRFDEANMLFEQMRT-----SGINPDVV-T 734 (790)
Q Consensus 665 ~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~-~ 734 (790)
..++...-+.+|.++|+++++++.+.-. -.|+.+.|. .+..++...|+.+++++++.+... .|++|+.. .
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 3444455566788999999988876531 246666554 455666778899999998888776 57777543 3
Q ss_pred HHHHHHHHhc
Q 003872 735 FNTLIEVNGK 744 (790)
Q Consensus 735 ~~~l~~~~~~ 744 (790)
|..+-.-|.+
T Consensus 159 fY~lssqYyk 168 (380)
T KOG2908|consen 159 FYSLSSQYYK 168 (380)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 418
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=37.00 E-value=1.1e+02 Score=20.89 Aligned_cols=20 Identities=30% Similarity=0.404 Sum_probs=9.7
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 003872 670 GLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~ 689 (790)
++.+.|++++|.+..+.+++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 44455555555555555544
No 419
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.72 E-value=6.6e+02 Score=28.30 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=24.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003872 239 YNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVL 281 (790)
Q Consensus 239 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 281 (790)
|..+..+|.-..+.+.+.++++++.+. ......|....+.+
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e--~~~llayQIAFDL~ 253 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE--DDLLLAYQIAFDLY 253 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc--chhhhHHHHHHHHh
Confidence 445666777777777788887777764 11233444444444
No 420
>PRK13342 recombination factor protein RarA; Reviewed
Probab=36.50 E-value=5.3e+02 Score=27.16 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=32.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCC
Q 003872 249 WGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGK-----VKDALIVWEELKGSGHEP 304 (790)
Q Consensus 249 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~~~ 304 (790)
.++.+.|+.++..|.+.|..|....-..++.++-..|. ..-|...++.....|.+-
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe 303 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPE 303 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcH
Confidence 46777788888888877766665544444444444432 334455555555556443
No 421
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=36.23 E-value=4.8e+02 Score=26.50 Aligned_cols=65 Identities=11% Similarity=0.050 Sum_probs=44.4
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 235 DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVP---DLHTYNSLIQVLCVVGKVKDALIVWEELKG 299 (790)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 299 (790)
...+|..+++.+.+.|.++.|...+..+...+... ++...-.-...+...|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567777888888888888888888877643211 334444445666677888888888777765
No 422
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.00 E-value=78 Score=30.95 Aligned_cols=42 Identities=29% Similarity=0.520 Sum_probs=31.5
Q ss_pred CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHH
Q 003872 117 VDSE-TFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYD 158 (790)
Q Consensus 117 ~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (790)
|+.. -|+..|....+.|+.++|+.++++..+.|+.--..+|-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4444 46788999999999999999999999988654444443
No 423
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.98 E-value=4.8e+02 Score=26.47 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=8.3
Q ss_pred cCChHHHHHHHHHHH
Q 003872 249 WGDLHTSLRLFKEMK 263 (790)
Q Consensus 249 ~g~~~~a~~~~~~m~ 263 (790)
..+++.|+.+|....
T Consensus 196 lk~fe~Al~~~e~~v 210 (422)
T KOG2582|consen 196 LKRFERALYLLEICV 210 (422)
T ss_pred cccHHHHHHHHHHHH
Confidence 345566665555554
No 424
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.17 E-value=74 Score=31.10 Aligned_cols=42 Identities=26% Similarity=0.310 Sum_probs=28.3
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH
Q 003872 694 YLDVV-MYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTF 735 (790)
Q Consensus 694 ~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 735 (790)
.||.. .|+.-|....+.||+++|++++++..+.|+.--..+|
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 34444 3457777777888888888888888877766444443
No 425
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=35.14 E-value=5.9e+02 Score=27.25 Aligned_cols=85 Identities=13% Similarity=0.005 Sum_probs=47.2
Q ss_pred HHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCC----------CHHHHHHHHHHHHh
Q 003872 643 NQAWGVLNEM-GEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGG--GYL----------DVVMYNTLINVLGK 709 (790)
Q Consensus 643 ~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~p----------~~~~~~~li~~~~~ 709 (790)
++....+... .+.|+..+......++... .|++..|...++.+....+ +.. .....-.++++ ..
T Consensus 183 ~el~~~L~~~~~~eg~~i~~~al~~L~~~s--~gdlr~a~~~Lekl~~~~~~~It~~~V~~l~~~~~~~~vf~L~~a-i~ 259 (451)
T PRK06305 183 ETIIDKLALIAKQEGIETSREALLPIARAA--QGSLRDAESLYDYVVGLFPKSLDPDSVAKALGLLSQDSLYTLDEA-IT 259 (451)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHHCCCCHHHHHHHHHH-HH
Confidence 4444444443 3446666666665555433 4888888888887653211 111 11122234443 34
Q ss_pred cCCHHHHHHHHHHHHhcCCCC
Q 003872 710 AGRFDEANMLFEQMRTSGINP 730 (790)
Q Consensus 710 ~g~~~~A~~~~~~m~~~g~~p 730 (790)
.+++++|..+++.+...|..|
T Consensus 260 ~~d~~~al~~l~~L~~~g~~~ 280 (451)
T PRK06305 260 TQNYAQALEPVTDAMNSGVAP 280 (451)
T ss_pred cCCHHHHHHHHHHHHHcCcCH
Confidence 567888888888887766554
No 426
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=34.87 E-value=4.3e+02 Score=29.48 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=49.8
Q ss_pred HHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------CCCHHHHHHHHHHHH
Q 003872 642 FNQAWGVLNEM-GEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGG------------YLDVVMYNTLINVLG 708 (790)
Q Consensus 642 ~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~p~~~~~~~li~~~~ 708 (790)
.++....+.+. .+.|+..+......++.. ..|++..|...++++...+.. ..+......++.+.
T Consensus 193 ~~el~~~L~~i~~kegi~i~~eAl~lIa~~--a~Gdlr~al~~Ldkli~~g~g~It~e~V~~llg~~~~~~if~L~~ai- 269 (598)
T PRK09111 193 ADVLAAHLSRIAAKEGVEVEDEALALIARA--AEGSVRDGLSLLDQAIAHGAGEVTAEAVRDMLGLADRARVIDLFEAL- 269 (598)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhhcCCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 34444555543 345666666665555543 358888888888887544310 11222222344433
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC
Q 003872 709 KAGRFDEANMLFEQMRTSGINPD 731 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~~g~~p~ 731 (790)
..|+.++|..++..+...|..|-
T Consensus 270 ~~gd~~~Al~~l~~l~~~G~~p~ 292 (598)
T PRK09111 270 MRGDVAAALAEFRAQYDAGADPV 292 (598)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHH
Confidence 34678888888888777766654
No 427
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.75 E-value=5.3e+02 Score=26.59 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 642 FNQAWGVLNEMG-EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 642 ~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 689 (790)
.++....+.... +.|+..+......++.. ..|++..|...++....
T Consensus 180 ~~el~~~L~~~~~~~g~~i~~~al~~ia~~--s~G~~R~al~~l~~~~~ 226 (363)
T PRK14961 180 EEKIFNFLKYILIKESIDTDEYALKLIAYH--AHGSMRDALNLLEHAIN 226 (363)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 344444444433 33544454444443332 34677777777766543
No 428
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=34.60 E-value=3e+02 Score=23.74 Aligned_cols=86 Identities=14% Similarity=0.118 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCCHhhHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCccCHHHHHHH
Q 003872 379 HNILIDGLFRNGRAEAAYTLFCDLKKKGK-----FVDGITFSIVVLQLCREGQ-IEEALRLVEEMEGRGFVVDLVTISSL 452 (790)
Q Consensus 379 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~l 452 (790)
.+.++...+..++....+.+++.+..... ..+..+|..++.+..+..- ---+..+|.-|.+.+.++++..|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44555555555555555555555432210 1255667888887765554 34466777777777788888888888
Q ss_pred HHHHHhcCCchH
Q 003872 453 LIGFHKYGRWDF 464 (790)
Q Consensus 453 ~~~~~~~g~~~~ 464 (790)
+.++.+....+.
T Consensus 122 i~~~l~g~~~~~ 133 (145)
T PF13762_consen 122 IKAALRGYFHDS 133 (145)
T ss_pred HHHHHcCCCCcc
Confidence 888766644443
No 429
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.94 E-value=7.5e+02 Score=28.10 Aligned_cols=102 Identities=13% Similarity=0.087 Sum_probs=56.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003872 278 IQVLCVVGKVKDALIVWEELKGSGHEP---NEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKS 354 (790)
Q Consensus 278 l~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 354 (790)
++.+.+.+.+++|+.+-+..... .+ -...+...|..+.-.|++++|-...-.|..+ +...|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 44555666677777665554432 33 2345566677777777777777777666653 455555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003872 355 RKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFR 388 (790)
Q Consensus 355 ~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~ 388 (790)
++......+ +....-+.+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 554332222 2222112344556666666654
No 430
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=33.92 E-value=6e+02 Score=26.99 Aligned_cols=66 Identities=23% Similarity=0.268 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCChHHHHHHHHHH--hccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 699 MYNTLINVLGKAGRFDEANMLFEQMRTS--GINPDVVTFNTLIEVN--GKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 699 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
.+..|..+++-.|++++|..++...... ...|... +++..| ...|+...|...+++..-..+.|..
T Consensus 621 ~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A---~~lavyidL~~G~~q~al~~lk~~~~~~~v~~~ 690 (696)
T KOG2471|consen 621 LFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQA---TVLAVYIDLMLGRSQDALARLKQCTHVSFVPGR 690 (696)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHH---HHHHHHHHHhcCCCcchHHHHHhcccccccCcc
Confidence 4556788899999999999999766542 1222221 222333 4578899999999888755555543
No 431
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.88 E-value=6.3e+02 Score=27.19 Aligned_cols=36 Identities=8% Similarity=-0.019 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003872 305 NEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPD 340 (790)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 340 (790)
+...+..++.+....+....|+.+++++.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 444445555555444445566666777766665544
No 432
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.74 E-value=5.6e+02 Score=26.60 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=42.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHH--HHHHHHHHH--HhcCCHHHHHHHHHHHHHh
Q 003872 635 SFVKKGYFNQAWGVLNEMGEKFCPTDIA--TYNVVIQGL--GKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 635 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~--~~~g~~~~A~~~~~~~~~~ 690 (790)
.+...+++..|.++++++... ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455789999999999999987 665554 455555655 4567889999999987765
No 433
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.12 E-value=4.3e+02 Score=29.63 Aligned_cols=66 Identities=11% Similarity=0.056 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDS-------ETFKLLLEPCIKSGKIDFAIEILDYMEEL 148 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 148 (790)
++.+...++-.|....+++...++.+.+.+..-..+. ..|...+..=-+-|+-++|+...-.+++.
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~ 272 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK 272 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHh
Confidence 3444455555555566666666666666553200000 11222222223345666666666555554
No 434
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=32.95 E-value=4.2e+02 Score=24.83 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=15.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 737 TLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 737 ~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
.+.....+.|+.++|.+++.++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3445556667777777777777643
No 435
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=32.86 E-value=4.5e+02 Score=26.00 Aligned_cols=71 Identities=17% Similarity=0.391 Sum_probs=43.8
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------cCCHHHH
Q 003872 256 LRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCK----------SYRMDDA 325 (790)
Q Consensus 256 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----------~~~~~~a 325 (790)
.++|+.|.+.++.|.-.+|.-+.-.+.+.=.+.+++.+|+.+... ..-|..++..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 356677777777777777766666666666677777777777542 2224445544442 4666666
Q ss_pred HHHHHH
Q 003872 326 MKIFSE 331 (790)
Q Consensus 326 ~~~~~~ 331 (790)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 666543
No 436
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=32.80 E-value=3.1e+02 Score=23.34 Aligned_cols=69 Identities=7% Similarity=0.048 Sum_probs=45.9
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 623 HPVNYTYNSMMSSFVKKGY---FNQAWGVLNEMGEKFC-PTDIATYNVVIQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 623 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
.++..+--.+.+++.+..+ ..+.+.++++..+... .-.......|.-++.+.|+++.++++.+.+++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 4555666667777777654 4566788888876322 2233344455567888889999998888887753
No 437
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=32.74 E-value=5.5e+02 Score=26.20 Aligned_cols=86 Identities=16% Similarity=0.252 Sum_probs=51.3
Q ss_pred HHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC------------HHHHHHHHHHHH
Q 003872 642 FNQAWGVLNEM-GEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD------------VVMYNTLINVLG 708 (790)
Q Consensus 642 ~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~------------~~~~~~li~~~~ 708 (790)
.++...++... .+.|+..+......++.. ..|++..|...++++....+...+ ......++.+..
T Consensus 178 ~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~--~~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~~~~~~~i~~l~~ai~ 255 (355)
T TIGR02397 178 LEDIVERLKKILDKEGIKIEDEALELIARA--ADGSLRDALSLLDQLISFGNGNITYEDVNELLGLVDDEKLIELLEAIL 255 (355)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCChHHHHHHHHHHHhhcCCCCCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34444455443 345766666666555543 357888888888876653311111 122333455544
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC
Q 003872 709 KAGRFDEANMLFEQMRTSGINP 730 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~~g~~p 730 (790)
.|+..+|.+++..+.+.|..|
T Consensus 256 -~~~~~~a~~~~~~l~~~~~~~ 276 (355)
T TIGR02397 256 -NKDTAEALKILDEILESGVDP 276 (355)
T ss_pred -cCCHHHHHHHHHHHHHcCCCH
Confidence 478888999998888876654
No 438
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.61 E-value=3.6e+02 Score=25.34 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=65.4
Q ss_pred CCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCC---CHHHH--HHHHHHHHhcCChHHHHHHHHHHHHhCCCCCH
Q 003872 80 YKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVV---DSETF--KLLLEPCIKSGKIDFAIEILDYMEELGTSLSP 154 (790)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~---~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 154 (790)
+.....-+|.++--|.-...+.+|...| ....++.| +...+ ..-|+.....|+.++|++....+...-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~F--a~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKF--AKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHh--ccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 3456666777777777766666666666 33444443 44444 34567778999999999999888665455555
Q ss_pred HHHHHHHH----HHHhcCChhHHHHHHHHHHH
Q 003872 155 NVYDSVLV----SLVRKKQLGLAMSILFKLLE 182 (790)
Q Consensus 155 ~~~~~ll~----~~~~~~~~~~a~~~~~~~~~ 182 (790)
..+-.|.. -+.+.|..++|++.++.-+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 44333332 25678888888888776443
No 439
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.54 E-value=4.4e+02 Score=24.97 Aligned_cols=21 Identities=5% Similarity=0.286 Sum_probs=11.9
Q ss_pred hccCChHHHHHHHHHHHHCCC
Q 003872 247 GCWGDLHTSLRLFKEMKEKGL 267 (790)
Q Consensus 247 ~~~g~~~~a~~~~~~m~~~g~ 267 (790)
+..+++.+|+.+|++.....+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344566666666666655433
No 440
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=32.53 E-value=5.5e+02 Score=27.88 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 642 FNQAWGVLNEMG-EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 642 ~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
.++-...++.+. +.++.-+...+..+. ....|...+|..+++++...+
T Consensus 180 ~~~I~~~L~~i~~~E~I~~e~~aL~~ia--~~a~Gs~RDalslLDq~i~~~ 228 (515)
T COG2812 180 LEEIAKHLAAILDKEGINIEEDALSLIA--RAAEGSLRDALSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHHHHHhcCCccCHHHHHHHH--HHcCCChhhHHHHHHHHHHcc
Confidence 344444455443 345555555554443 345566777777777776654
No 441
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.39 E-value=4.2e+02 Score=28.70 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=50.7
Q ss_pred HHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH------------HHHHHHHHHHH
Q 003872 642 FNQAWGVLNEM-GEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDV------------VMYNTLINVLG 708 (790)
Q Consensus 642 ~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~------------~~~~~li~~~~ 708 (790)
.++....+... .+.|+..+......++.. ..|++..|...++.+...++...+. .....++.+.
T Consensus 180 ~~el~~~L~~i~k~egi~id~~al~~La~~--s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~lg~~~~~~vf~Li~ai- 256 (486)
T PRK14953 180 KEQIKEYLKRICNEEKIEYEEKALDLLAQA--SEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQESVRKFLNLL- 256 (486)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 34444444443 344666666666655543 4488888888888876443222211 1222333333
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCh
Q 003872 709 KAGRFDEANMLFEQMRTSGINPDV 732 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~~g~~p~~ 732 (790)
..|+.++|..+++++...|..|..
T Consensus 257 ~~~d~~~al~~l~~L~~~g~~~~~ 280 (486)
T PRK14953 257 LESDVDEAIKFLRTLEEKGYNLNK 280 (486)
T ss_pred HCCCHHHHHHHHHHHHHcCCCHHH
Confidence 357788888888888877666553
No 442
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.97 E-value=4.4e+02 Score=26.02 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 003872 361 CQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLC 422 (790)
Q Consensus 361 ~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 422 (790)
.++++.+.+.++.|.-.++.-+.-.+.+.=.+.+.+.+|..+... +.-|..|+..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 345555666666666666666655666666666666666665542 222555555544
No 443
>PF13934 ELYS: Nuclear pore complex assembly
Probab=31.93 E-value=4.5e+02 Score=24.88 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 276 SLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQ 333 (790)
Q Consensus 276 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 333 (790)
-++.++...|+...|+.+++.+.-. ..+......++.. ..++.+.+|..+-+...
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLVTEAFSFQRSYP 167 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCHHHHHHHHHhCc
Confidence 3556666667777777666665322 1112222222233 44466666665554443
No 444
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.55 E-value=65 Score=23.16 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=28.2
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKS 132 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~ 132 (790)
++...++.++...++..-.++++..+..+...|. .+..+|.--++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666653 4555665555555543
No 445
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.48 E-value=2.5e+02 Score=21.88 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=9.7
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003872 671 LGKMGRADLASTILDKLMK 689 (790)
Q Consensus 671 ~~~~g~~~~A~~~~~~~~~ 689 (790)
....|++++|...+++.++
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 3444555555555555443
No 446
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=31.22 E-value=9.1e+02 Score=28.24 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcC
Q 003872 340 DTVVYNSLLNGMFKSRKVMEACQLFEKMVQ-DGVRTSCWTHNILIDGLFRNG 390 (790)
Q Consensus 340 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~-~~~~~~~~~~~~li~~~~~~~ 390 (790)
|..++..-...+...|++..+.+++.++.+ .|-.++...|..++..+...|
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 333343334444445555555555555444 233344444444444444333
No 447
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=31.08 E-value=2.9e+02 Score=22.42 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFT 618 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~ 618 (790)
|..++..|...|..++|++++..+.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHh
Confidence 3444444445555555555544443
No 448
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=30.65 E-value=4.4e+02 Score=27.48 Aligned_cols=102 Identities=18% Similarity=0.181 Sum_probs=61.2
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHH-------hCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003872 587 GTFDIDMVNTFLSIFLAKGKLNLACKLFEIFT-------DMGVHPV-----NYTYNSMMSSFVKKGYFNQAWGVLNEMGE 654 (790)
Q Consensus 587 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-------~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 654 (790)
..++......++..+....++.+.++..+... +.|..|- -.+...|++.++-.||+..|+++++.+.-
T Consensus 71 ~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl 150 (404)
T PF10255_consen 71 DVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDL 150 (404)
T ss_pred CcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCc
Confidence 34455555556666666666666555544321 1111111 12234566777888999999988886531
Q ss_pred --cC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 655 --KF-----CPTDIATYNVVIQGLGKMGRADLASTILDKLM 688 (790)
Q Consensus 655 --~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 688 (790)
.+ ..-.+.++-.+.-+|.-.+++.+|.+.|..+.
T Consensus 151 ~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 151 NKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred ccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12234466677778888889999998888764
No 449
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.57 E-value=3.7e+02 Score=24.29 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=16.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Q 003872 418 VLQLCREGQIEEALRLVEEMEGR 440 (790)
Q Consensus 418 l~~~~~~g~~~~a~~~~~~m~~~ 440 (790)
+..|.+.|.+++|.++++...+.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcC
Confidence 44577778888888877777653
No 450
>PRK09857 putative transposase; Provisional
Probab=30.56 E-value=3.4e+02 Score=26.90 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=31.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 003872 708 GKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPN 766 (790)
Q Consensus 708 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 766 (790)
...|+.++..++++.+.+. ..+-....-++..-+...|.-++++++..+|...|+.++
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3445544455555444433 222233334455555555655667778888887777765
No 451
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.54 E-value=8.2e+02 Score=27.50 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=18.7
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 654 EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLM 688 (790)
Q Consensus 654 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 688 (790)
+.|+..+......++... .|++..|...++++.
T Consensus 195 ~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~ 227 (614)
T PRK14971 195 KEGITAEPEALNVIAQKA--DGGMRDALSIFDQVV 227 (614)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 446655555544444332 467777777776643
No 452
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.42 E-value=4.8e+02 Score=24.80 Aligned_cols=87 Identities=8% Similarity=-0.115 Sum_probs=59.7
Q ss_pred HHhcCCcchHHHHHHHhhhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHhcCChh
Q 003872 94 VCRAGFLEEVPSLLNSMQEDDVVVDS-ETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSP-NVYDSVLVSLVRKKQLG 171 (790)
Q Consensus 94 ~~~~~~~~~a~~l~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~ 171 (790)
|...++++.|...+...+..+ |+. .-|..-+..+.+..+++.+.+--.+..+.. |+. ...--+-.++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql~--~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--PNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--hHHHHHHHHHHHHHHhhcccc
Confidence 344567788888776666654 444 455667777778888888877777666642 443 34455556677788899
Q ss_pred HHHHHHHHHHHHh
Q 003872 172 LAMSILFKLLEAC 184 (790)
Q Consensus 172 ~a~~~~~~~~~~~ 184 (790)
.|+..+.+..+..
T Consensus 96 eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 96 EAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988886654
No 453
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.31 E-value=2.3e+02 Score=27.25 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=11.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 003872 667 VIQGLGKMGRADLASTILDKL 687 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~ 687 (790)
+..-|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334455555555555555554
No 454
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.93 E-value=7.1e+02 Score=27.73 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=27.2
Q ss_pred HHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003872 643 NQAWGVLNEMG-EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 643 ~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
++....+.... +.|+..+......++. ...|+...|+.+++++..-
T Consensus 180 ~~i~~~L~~i~~~egi~i~~~al~~Ia~--~s~GdlR~aln~Ldql~~~ 226 (584)
T PRK14952 180 RTMRALIARICEQEGVVVDDAVYPLVIR--AGGGSPRDTLSVLDQLLAG 226 (584)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHhc
Confidence 34444444433 3466666665555533 3457888888888887653
No 455
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=28.99 E-value=8.3e+02 Score=27.23 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcc
Q 003872 746 GRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 746 g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
++...|+.++.+|...|..|...
T Consensus 259 kd~~~al~~l~~Ll~~ge~~~~i 281 (605)
T PRK05896 259 NDIEELRNLINELESKGINFEAF 281 (605)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 45555555555555555555443
No 456
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.94 E-value=5.5e+02 Score=24.95 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=45.6
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
-++.....+...|.+.+++.+|..-|=. |-.++...+..++..+...|...++ |...-.+++
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~----~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL 149 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL----GTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL 149 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT----S-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh----cCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH
Confidence 3677888889999999999888765522 1133333333344333333333322 222223333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh
Q 003872 669 QGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
. |.-.++...|...++...+.
T Consensus 150 ~-yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 Q-YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp H-HHHTTBHHHHHHHHHHHHHH
T ss_pred H-HHHhcCHHHHHHHHHHHHHH
Confidence 3 55668888888888777665
No 457
>PRK11619 lytic murein transglycosylase; Provisional
Probab=28.92 E-value=8.9e+02 Score=27.41 Aligned_cols=116 Identities=5% Similarity=-0.040 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHHHCC-CCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003872 250 GDLHTSLRLFKEMKEKG-LVPDL--HTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAM 326 (790)
Q Consensus 250 g~~~~a~~~~~~m~~~g-~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 326 (790)
.+.+.|..++....... +.+.. .+...+.......+...++...++..... ..+......-+....+.++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHH
Confidence 45566777776654332 11111 12222322222222244555555544322 123333344444445667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 327 KIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMV 368 (790)
Q Consensus 327 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~ 368 (790)
..+..|.... .-...-.--+.+++...|+.++|...|+.+.
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7776665422 1133333445555555677777777777653
No 458
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.78 E-value=2.7e+02 Score=21.40 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003872 140 EILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLE 182 (790)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 182 (790)
++|+-....|+..|+.+|..++..+.-.-.++...++++.+..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5555555556666666666666655555555555555555543
No 459
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=28.72 E-value=7.4e+02 Score=26.42 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCC
Q 003872 424 EGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYT 503 (790)
Q Consensus 424 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 503 (790)
..++++|+...++..+.+-..+ .|-.-.+..++.++.+.++.||.+| ...+....+.
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~S-------------Ig~~GNaadv~~~l~~r~i~pDlvt----------DQTSaHdp~~ 263 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPIS-------------IGLLGNAAEVLPELLKRGVVPDVVT----------DQTSAHDPLN 263 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCceE-------------EEeeccHHHHHHHHHHcCCCCCCcC----------CCCcccCccc
Confidence 4578899999888888765433 2344567888999999999999765 3334445566
Q ss_pred CCCCCCCChHHHHHhhcCCc
Q 003872 504 PMFPYKGDLSEIMSLIGSTN 523 (790)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~ 523 (790)
.++|..-+++|+..+..+.+
T Consensus 264 GY~P~g~t~ee~~~lr~~dp 283 (545)
T TIGR01228 264 GYIPEGYTVEDADKLRQEEP 283 (545)
T ss_pred ccCCCCCCHHHHHHHHHhCH
Confidence 67777778888887765543
No 460
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=28.60 E-value=8.9e+02 Score=27.35 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 642 FNQAWGVLNEMG-EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 642 ~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
.++....+.... ..|+..+......+. ....|++..|+.+++.+...+
T Consensus 180 ~~ei~~~L~~il~~e~i~~e~~aL~~Ia--~~s~Gs~R~Al~lldqaia~~ 228 (647)
T PRK07994 180 VEQIRQQLEHILQAEQIPFEPRALQLLA--RAADGSMRDALSLTDQAIASG 228 (647)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHcCCCHHHHHHHHHHHHHhc
Confidence 445555555543 346666665554443 346789999999998877654
No 461
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.53 E-value=6.8e+02 Score=25.93 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 003872 121 TFKLLLEPCIKSGKIDFAIEILDY 144 (790)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~ 144 (790)
.+.-+..-|...|+++.|++.|.+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR 175 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSR 175 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhh
Confidence 344444445555555555555544
No 462
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=28.43 E-value=8.1e+02 Score=26.79 Aligned_cols=88 Identities=14% Similarity=-0.064 Sum_probs=45.1
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003872 637 VKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEA 716 (790)
Q Consensus 637 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 716 (790)
...|+...|..-+..+......-..+....|.+...+.|....|-.++.+.+... ...+.++-.+.++|.-..+++.|
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--ccCchHHHhcchhHHHHhhhHHH
Confidence 3456666666555554433221122233334444555555556666665555442 22334445555666666666666
Q ss_pred HHHHHHHHhc
Q 003872 717 NMLFEQMRTS 726 (790)
Q Consensus 717 ~~~~~~m~~~ 726 (790)
++-|++..+.
T Consensus 696 ~~~~~~a~~~ 705 (886)
T KOG4507|consen 696 LEAFRQALKL 705 (886)
T ss_pred HHHHHHHHhc
Confidence 6666666553
No 463
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.78 E-value=5.9e+02 Score=24.93 Aligned_cols=100 Identities=10% Similarity=0.150 Sum_probs=61.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHh----hcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHhCCCCC---
Q 003872 624 PVNYTYNSMMSSFVKKGYFNQAWGVLNEMG----EKFCPTDIATYNV-VIQGLGKMGRADLASTILDKLMKQGGGYL--- 695 (790)
Q Consensus 624 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~p--- 695 (790)
--...+..+...|++-++.+.+.++..+.. ..|.+.|+...-+ |.-.|....-+++-++..+.|+++||---
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 345667778888999999988887766544 4466666543322 22234444556788888888888884211
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 696 DVVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 696 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
--.+|-.+. +....++.+|-.++-....
T Consensus 193 RyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 193 RYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 122444332 2233567788777766653
No 464
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=27.65 E-value=1.4e+02 Score=17.86 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHH
Q 003872 713 FDEANMLFEQMRTSGINPDVVTFN 736 (790)
Q Consensus 713 ~~~A~~~~~~m~~~g~~p~~~~~~ 736 (790)
++.|..+|++.... .|+..+|-
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHHH
Confidence 45555555555542 34544443
No 465
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.62 E-value=1e+03 Score=27.62 Aligned_cols=260 Identities=12% Similarity=0.074 Sum_probs=123.3
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003872 88 SHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDS--ETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLV 165 (790)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 165 (790)
..+-+.|...|+|+.|+++-+.- |+. .++..-...|.+.+++..|-++|.++.+ .|..+.--|.
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl 427 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFL 427 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHH
Confidence 34556778888888887665322 221 2334444566778899999999987743 3555555555
Q ss_pred hcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcc-----hHHHHHHHHH-hccchH----HHHHHHHHHH--------
Q 003872 166 RKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCV-----ACNELLVALR-KSDRRS----EFKQVFERLK-------- 227 (790)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ll~~~~-~~~~~~----~a~~~~~~~~-------- 227 (790)
...+.+.-..++.+-++. ..|... ..+.|+..|. +.++.+ ++.+-++.-.
T Consensus 428 ~~~~~~~L~~~L~KKL~~------------lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~ 495 (911)
T KOG2034|consen 428 EINQERALRTFLDKKLDR------------LTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFS 495 (911)
T ss_pred hcCCHHHHHHHHHHHHhh------------CChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHH
Confidence 555555444444443332 222211 1222333332 222222 2222111111
Q ss_pred hcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-
Q 003872 228 EQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNE- 306 (790)
Q Consensus 228 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~- 306 (790)
.......+...+.+.-..+...|+.+.+..+-.-|.+ |..++..++..+.+++|++++..-. .|..
T Consensus 496 ~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~----~~el~ 562 (911)
T KOG2034|consen 496 KFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQR----NPELF 562 (911)
T ss_pred HHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcc----chhhH
Confidence 0000111222233344444555666666655444432 5667777777777888777765542 1111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003872 307 FTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSR---KVMEACQLFEKMVQDGVRTSCWTHNILI 383 (790)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~l~~~~~~~~~~~~~~~~~~li 383 (790)
.-|...+ ....+......+..+.+. ........++..+.+.+ ....+...++-....--..+...+|.++
T Consensus 563 yk~ap~L----i~~~p~~tV~~wm~~~d~---~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll 635 (911)
T KOG2034|consen 563 YKYAPEL----ITHSPKETVSAWMAQKDL---DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLL 635 (911)
T ss_pred HHhhhHH----HhcCcHHHHHHHHHcccc---CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHH
Confidence 1111111 112333333333333222 22233344444444442 2334444444444332234677788888
Q ss_pred HHHHHcCCHH
Q 003872 384 DGLFRNGRAE 393 (790)
Q Consensus 384 ~~~~~~~~~~ 393 (790)
..|++..+-+
T Consensus 636 ~lya~~~~~~ 645 (911)
T KOG2034|consen 636 HLYAKHERDD 645 (911)
T ss_pred HHhhcCCccc
Confidence 8887665433
No 466
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=27.46 E-value=5.5e+02 Score=24.49 Aligned_cols=59 Identities=8% Similarity=0.182 Sum_probs=40.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHhh
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVK-KGYFNQAWGVLNEMGE 654 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~ 654 (790)
-++..+-+.|+++++...++.+.+.+...+..=-+.|-.+|-. .|....+.+++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4677788899999999999999988777776666666555533 3555666666665543
No 467
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.34 E-value=1.7e+02 Score=23.79 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 003872 665 NVVIQGLGKMGRADLASTILDKL 687 (790)
Q Consensus 665 ~~li~~~~~~g~~~~A~~~~~~~ 687 (790)
..++..|...|+.++|...+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34556677778888888888765
No 468
>PRK09687 putative lyase; Provisional
Probab=27.25 E-value=6.1e+02 Score=24.96 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=74.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003872 270 DLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSY-RMDDAMKIFSEMQYNGLIPDTVVYNSLL 348 (790)
Q Consensus 270 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li 348 (790)
+..+-...+.++.+.++ ..+...+-.+.+ .++...-...+.++.+.+ +...+...+..+... ++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence 55555566666666665 345555555554 344445555555555442 233455555555543 4666666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 003872 349 NGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQ 420 (790)
Q Consensus 349 ~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 420 (790)
.++.+.++. .+...+-...+.+ + .....+.++...|.. +|...+..+... .+|...-...+.+
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 777777774 4555444444433 2 233566677777774 566777666654 2255444444443
No 469
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.23 E-value=2.9e+02 Score=21.24 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=31.0
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003872 612 KLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK 655 (790)
Q Consensus 612 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 655 (790)
++|+-....|+..|+..|..+++...-+=-++...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 66777777777777777777777766666667777777766543
No 470
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.18 E-value=6e+02 Score=25.16 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=26.8
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 003872 206 LLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKE 264 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 264 (790)
++..+.+.++..+..+.+..+. ....-...+......|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~-------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK-------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444455555555555555544 222333445555556666666666665543
No 471
>PRK09857 putative transposase; Provisional
Probab=27.16 E-value=4.4e+02 Score=26.15 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 003872 664 YNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDV 732 (790)
Q Consensus 664 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 732 (790)
+..+++.....++.++..++++.+.+. .+......-++..-+...|.-+++.++..+|...|+.++.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~--~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER--SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh--CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 344554445566666667777666554 2333334445666666667767788888888888877653
No 472
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=26.87 E-value=8e+02 Score=27.18 Aligned_cols=86 Identities=16% Similarity=0.264 Sum_probs=50.4
Q ss_pred HHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH------------HHHHHHHHHHHh
Q 003872 643 NQAWGVLNEM-GEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDV------------VMYNTLINVLGK 709 (790)
Q Consensus 643 ~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~------------~~~~~li~~~~~ 709 (790)
++....+... .+.|+..+......++.. ..|+...|..+++++...++...+. .....++.+. .
T Consensus 181 ~ei~~~L~~i~~~egi~i~~~al~~ia~~--s~G~~R~al~~Ldq~~~~~~~~It~~~V~~vlg~~~~~~i~~l~~al-~ 257 (559)
T PRK05563 181 EDIVERLKYILDKEGIEYEDEALRLIARA--AEGGMRDALSILDQAISFGDGKVTYEDALEVTGSVSQEALDDLVDAI-V 257 (559)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 3444444443 345777777666665553 3488888998888776543212111 1223334333 3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC
Q 003872 710 AGRFDEANMLFEQMRTSGINPD 731 (790)
Q Consensus 710 ~g~~~~A~~~~~~m~~~g~~p~ 731 (790)
.|+..+|..+++++...|..|.
T Consensus 258 ~~d~~~al~~l~~l~~~g~d~~ 279 (559)
T PRK05563 258 EGDVAKALKILEELLDEGKDPN 279 (559)
T ss_pred ccCHHHHHHHHHHHHHcCCCHH
Confidence 4678888888888877766553
No 473
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=26.71 E-value=6.5e+02 Score=25.09 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=15.2
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCC
Q 003872 742 NGKAGRLKEAHYFLKMMLDSGCTP 765 (790)
Q Consensus 742 ~~~~g~~~~A~~~~~~m~~~~~~p 765 (790)
.+..|++.+.....+++.+.|+.|
T Consensus 265 ~a~S~d~~~~v~~~Rei~~sg~~~ 288 (346)
T KOG0989|consen 265 LALSADTPNTVKRVREIMRSGYSP 288 (346)
T ss_pred HHHccChHHHHHHHHHHHHhccCH
Confidence 345566666666666666666655
No 474
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=26.26 E-value=2.7e+02 Score=32.86 Aligned_cols=73 Identities=11% Similarity=0.181 Sum_probs=45.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHH
Q 003872 709 KAGRFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTLDFLGREID 781 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l~~l~~~~~ 781 (790)
....+.+++++|..|...|+-.. ...|..+...+.+.+.|.+|..+++.-.++.-.|-......+..+.+.+.
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~ 163 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLM 163 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 44556777777777777766665 44556666677777777777777777766656665544444433333333
No 475
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.07 E-value=5.7e+02 Score=25.33 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=32.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHh
Q 003872 160 VLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKE 228 (790)
Q Consensus 160 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (790)
++....+..+.....+.+..+... ......+..+...|++..|++++....+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~v-----------------~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKTV-----------------QQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344455555555555555554332 2334466777889999999998888765
No 476
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=25.94 E-value=3.8e+02 Score=22.08 Aligned_cols=73 Identities=19% Similarity=0.199 Sum_probs=48.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------------CCChHHHHHHHHHHh
Q 003872 682 TILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGI------------------NPDVVTFNTLIEVNG 743 (790)
Q Consensus 682 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------~p~~~~~~~l~~~~~ 743 (790)
+.|..+....+..|..++..-+...++-+ ...|..++++|.+.|. .+-...+...+..+.
T Consensus 4 ~~y~~L~~~~~~~~~~vtl~elA~~l~cS--~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l 81 (115)
T PF12793_consen 4 EQYQRLWQHYGGQPVEVTLDELAELLFCS--RRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELL 81 (115)
T ss_pred HHHHHHHHHcCCCCcceeHHHHHHHhCCC--HHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHH
Confidence 34455555544456666777776665443 3468888888887642 111345566778888
Q ss_pred ccCCHHHHHHHHH
Q 003872 744 KAGRLKEAHYFLK 756 (790)
Q Consensus 744 ~~g~~~~A~~~~~ 756 (790)
..|+++.|.++++
T Consensus 82 ~~g~~~~a~~ll~ 94 (115)
T PF12793_consen 82 EQGKYEQALQLLD 94 (115)
T ss_pred HcCCHHHHHHHHH
Confidence 8999999999887
No 477
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.72 E-value=1.3e+02 Score=21.62 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=14.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003872 270 DLHTYNSLIQVLCVVGKVKDALIVWEELKGSG 301 (790)
Q Consensus 270 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 301 (790)
+...++.++..+++..-.+++...+.+..+.|
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344444444444444444444444444444
No 478
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=25.50 E-value=3.7e+02 Score=21.80 Aligned_cols=80 Identities=24% Similarity=0.228 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHH
Q 003872 675 GRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYF 754 (790)
Q Consensus 675 g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 754 (790)
...++|..|.+-+...+ . -....--+-+..+...|++++|. .. - .....||...|-+|. -.+.|--+.+...
T Consensus 20 HcH~EA~tIa~wL~~~~-~-~~E~v~lIr~~sLmNrG~Yq~AL--l~-~-~~~~~pdL~p~~AL~--a~klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG-E-MEEVVALIRLSSLMNRGDYQEAL--LL-P-QCHCYPDLEPWAALC--AWKLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTT-T-THHHHHHHHHHHHHHTT-HHHHH--HH-H-TTS--GGGHHHHHHH--HHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-c-HHHHHHHHHHHHHHhhHHHHHHH--Hh-c-ccCCCccHHHHHHHH--HHhhccHHHHHHH
Confidence 35678888888777664 1 22333333445577899999992 22 1 233578998887764 4788998999999
Q ss_pred HHHHHhCC
Q 003872 755 LKMMLDSG 762 (790)
Q Consensus 755 ~~~m~~~~ 762 (790)
+.++-..|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 98886554
No 479
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=25.33 E-value=7e+02 Score=24.99 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHH----CCCCCCHhHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCCH----
Q 003872 236 IYGYNICIHAFGCWGDLHTSLRLFKEMKE----KGLVPDLHTYNSLIQVL-CVVGKVKDALIVWEELKGSGHEPNE---- 306 (790)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~g~~~~~---- 306 (790)
...+-.....|++.||.+.|++.+....+ .|.+.|...+..-+..+ ....-+.+-.+..+.+.+.|...+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34555667788999999999888776544 46777777666544333 2333345555555666666655443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 307 FTHRIIIQGCCKSYRMDDAMKIFSEMQ 333 (790)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~m~ 333 (790)
.+|..+- +....++.+|-.+|-+..
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 2343332 223467888888876655
No 480
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=25.26 E-value=6.4e+02 Score=25.43 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh------------
Q 003872 676 RADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNG------------ 743 (790)
Q Consensus 676 ~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~------------ 743 (790)
..++...++..+....|...+......++... .|++.++...++.....+-..+......++....
T Consensus 185 ~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~--~gdlr~l~~~l~~~~~~~~~It~~~v~~~~~~~~~~~~i~~l~~ai 262 (337)
T PRK12402 185 TDDELVDVLESIAEAEGVDYDDDGLELIAYYA--GGDLRKAILTLQTAALAAGEITMEAAYEALGDVGTDEVIESLLDAA 262 (337)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCCHHHHHHHHHHH
Q ss_pred ccCCHHHHHHHHHHHH-hCCCCCCccchhHHHHHHHHHHhhhhhh
Q 003872 744 KAGRLKEAHYFLKMML-DSGCTPNHVTDTTLDFLGREIDRLKDQN 787 (790)
Q Consensus 744 ~~g~~~~A~~~~~~m~-~~~~~p~~~t~~~l~~l~~~~~~~~~~~ 787 (790)
..|+.++|..++.+|. +.|+.|....-.+.......++.....+
T Consensus 263 ~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~l~~ 307 (337)
T PRK12402 263 EAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVARSRYRGDNLAR 307 (337)
T ss_pred HcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCHHHHHH
No 481
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=24.64 E-value=1.1e+03 Score=27.23 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 003872 216 RSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKE 264 (790)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 264 (790)
.++..+.++.+.+..++..+......+.+. ..|+...|+.++++...
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia 226 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 455566666666556666566555555443 35888888888777553
No 482
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=24.62 E-value=8.2e+02 Score=25.53 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=55.0
Q ss_pred CCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH--------HHhcCCHHHHHHHHHHHHhCC
Q 003872 230 KEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQV--------LCVVGKVKDALIVWEELKGSG 301 (790)
Q Consensus 230 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~g 301 (790)
..+.||.++.|-+...++..-..+....+|+-..+.+ .|-...|.+++-. -.+...-+++.++++.|...-
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 6688888888888888888888888888888887764 2232333322211 112334577788887776543
Q ss_pred CCCCHHHHHHHHHHHHh
Q 003872 302 HEPNEFTHRIIIQGCCK 318 (790)
Q Consensus 302 ~~~~~~~~~~li~~~~~ 318 (790)
-.-|+.-+-.|...|+.
T Consensus 256 ~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYSD 272 (669)
T ss_pred ccccchhHHHHHHHHhh
Confidence 23455556666666653
No 483
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.57 E-value=8.8e+02 Score=27.09 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=46.6
Q ss_pred HHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH------------HHHHHHHHHh
Q 003872 643 NQAWGVLNEM-GEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVM------------YNTLINVLGK 709 (790)
Q Consensus 643 ~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~------------~~~li~~~~~ 709 (790)
.+....+.+. .+.|+..+......++.. ..|++..|...++++...++...+... ...++++. .
T Consensus 182 ~el~~~L~~~a~~egl~i~~eal~~La~~--s~Gdlr~al~~LekL~~y~~~~It~e~V~~ll~~s~~~~vf~Lidal-~ 258 (585)
T PRK14950 182 ADMAAHLRKIAAAEGINLEPGALEAIARA--ATGSMRDAENLLQQLATTYGGEISLSQVQSLLGISGDEEVKALAEAL-L 258 (585)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHH-H
Confidence 3444444433 344666666666655543 347888888888876543222222211 22234333 3
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 003872 710 AGRFDEANMLFEQMRTSGIN 729 (790)
Q Consensus 710 ~g~~~~A~~~~~~m~~~g~~ 729 (790)
.|+..+|.++++.+.+.|..
T Consensus 259 ~~d~~~al~~l~~L~~~g~~ 278 (585)
T PRK14950 259 AKDLKAALRTLNAVAADGAD 278 (585)
T ss_pred cCCHHHHHHHHHHHHHcCCC
Confidence 46777778877777776654
No 484
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=24.44 E-value=1.7e+02 Score=30.67 Aligned_cols=105 Identities=17% Similarity=0.041 Sum_probs=71.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcC
Q 003872 598 LSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMM-SSFVKKGYFNQAWGVLNEMGEKFCPTD-IATYNVVIQGLGKMG 675 (790)
Q Consensus 598 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g 675 (790)
++.+.+.++++.|..++.+.++. .||...|-+.= .++.+.+++..|+.=+..+++.. |+ .-.|.-=..+|.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 34455678899999999999887 57666654433 68889999999998888888763 32 122222234455566
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003872 676 RADLASTILDKLMKQGGGYLDVVMYNTLINVLGK 709 (790)
Q Consensus 676 ~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 709 (790)
.+.+|...|+.... +.|+..-...++.-|-+
T Consensus 87 ~~~~A~~~l~~~~~---l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK---LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhh---cCcCcHHHHHHHHHHHH
Confidence 77788888877665 56887777766665544
No 485
>PRK09462 fur ferric uptake regulator; Provisional
Probab=24.22 E-value=3.8e+02 Score=23.19 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=41.0
Q ss_pred hhhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChh
Q 003872 110 MQEDDVVVDSETFKLLLEPCIKS-GKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLG 171 (790)
Q Consensus 110 ~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 171 (790)
+.+.|..++.. -..++..+... +..-.|.++++.+.+.+...+..+....+..+...|-+.
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44556654443 33455555544 467889999999988887777777777777777777653
No 486
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.22 E-value=7.6e+02 Score=25.03 Aligned_cols=62 Identities=18% Similarity=0.307 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003872 323 DDAMKIFSEMQYNGLIPDTV----VYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGL 386 (790)
Q Consensus 323 ~~a~~~~~~m~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~ 386 (790)
+++..++..+... .|+.. -|.++.+.....|.++.++.+|++.+..|-.|-...-..++..+
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3455555555543 34432 35566666666677777777777777776666555444444443
No 487
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.03 E-value=4.1e+02 Score=23.70 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=43.1
Q ss_pred hhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhH
Q 003872 110 MQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGL 172 (790)
Q Consensus 110 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 172 (790)
+...|...+..- ..++..+...++.-.|.++++.+.+.+...+..+....|..+...|-+..
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 344566545433 34556666667778899999999988877777777777778887776544
No 488
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=23.94 E-value=8.8e+02 Score=25.67 Aligned_cols=86 Identities=15% Similarity=0.057 Sum_probs=44.6
Q ss_pred hcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003872 96 RAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMS 175 (790)
Q Consensus 96 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 175 (790)
..|+...|-+-+....+.. +-++.........+...|.++.+.+.+...... +.....+...+++...+.|+++.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3455555544444333332 112222222233344567777777666655443 22344566666666677777777776
Q ss_pred HHHHHHHH
Q 003872 176 ILFKLLEA 183 (790)
Q Consensus 176 ~~~~~~~~ 183 (790)
.-..|+..
T Consensus 379 ~a~~~l~~ 386 (831)
T PRK15180 379 TAEMMLSN 386 (831)
T ss_pred HHHHHhcc
Confidence 66666543
No 489
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=23.72 E-value=6.4e+02 Score=24.02 Aligned_cols=119 Identities=10% Similarity=-0.020 Sum_probs=62.6
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHH-HHHHHHHHhcCCHH
Q 003872 601 FLAKGKLNLACKLFEIFTDMGVHPVNY-TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATY-NVVIQGLGKMGRAD 678 (790)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~ 678 (790)
|-...+++.|..-+.+.+.. .|+.. .|+-=+..+.+..+++.+..--...++. .||.+-- ..+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 33445667777766555543 45553 3444455566666777666655555553 3444432 23334455666777
Q ss_pred HHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 679 LASTILDKLMKQG---GGYLDVVMYNTLINVLGKAGRFDEANMLFEQM 723 (790)
Q Consensus 679 ~A~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 723 (790)
+|+..+++..... .+.+-...++.|..+=-+.=...+..++.+..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 7777777763321 23444455555554433333344455554444
No 490
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=23.62 E-value=7.8e+02 Score=24.95 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 003872 678 DLASTILDKLMKQGGGYLDV----VMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGK 744 (790)
Q Consensus 678 ~~A~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 744 (790)
++...++.+++.. .|+. ..|.+++......|.+++++.+|+++...|..|-...-..+++.+-.
T Consensus 120 eei~~~L~~li~~---IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~ 187 (353)
T PF15297_consen 120 EEILATLSDLIKN---IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKM 187 (353)
T ss_pred HHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 4666667766654 2453 46778888888889999999999999999999988888778777663
No 491
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.61 E-value=1e+03 Score=27.12 Aligned_cols=100 Identities=10% Similarity=0.065 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 216 RSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWE 295 (790)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 295 (790)
.++....+..+.+..|+..+......++... .|+...++.+++++...|- ...+. +...
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~--g~It~-----------------e~V~ 238 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS--GKVAE-----------------NDVR 238 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCcCH-----------------HHHH
Confidence 3555566666666567766666666666554 4888888888877654321 11111 1111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003872 296 ELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPD 340 (790)
Q Consensus 296 ~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 340 (790)
.+. | ..+......++.++.. ++...++.+++++...|+.+.
T Consensus 239 ~lL--G-~~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 239 QMI--G-AVDKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHH--c-ccCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 111 1 1233334445555544 677778888888877776533
No 492
>PRK14700 recombination factor protein RarA; Provisional
Probab=23.26 E-value=7.4e+02 Score=24.57 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=25.4
Q ss_pred CCCCChHHHHHHhhcCCCCchhhhhhhhhh
Q 003872 44 SIPISEPLVLQVLGKNSLDSSKKLDFFRWC 73 (790)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~~~al~~f~~~ 73 (790)
.+.++++.+..+.....+|.+.|+..++.+
T Consensus 62 ~~~i~~~al~~ia~~a~GDaR~aLN~LE~a 91 (300)
T PRK14700 62 KFKIDDGLYNAMHNYNEGDCRKILNLLERM 91 (300)
T ss_pred CCCcCHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 467888999998888889999999888874
No 493
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.24 E-value=2.2e+02 Score=23.27 Aligned_cols=47 Identities=23% Similarity=0.157 Sum_probs=31.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChh
Q 003872 125 LLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLG 171 (790)
Q Consensus 125 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 171 (790)
++..+...+..-.|.++++.+.+.+...+..+....+..+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45555555666677777877777766667776666667777666544
No 494
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.15 E-value=1.2e+03 Score=27.61 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC------------CHHHHHHHHHHHH
Q 003872 642 FNQAWGVLNEMGE-KFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYL------------DVVMYNTLINVLG 708 (790)
Q Consensus 642 ~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p------------~~~~~~~li~~~~ 708 (790)
.++....+....+ .++..+......++. ...|++..|..+++.+...++... +......++.. .
T Consensus 180 ~eEI~~~L~~il~~EgI~~edeAL~lIA~--~S~Gd~R~ALnLLdQala~~~~~It~~~V~~llG~iD~~~V~~llks-I 256 (944)
T PRK14949 180 QDEIGTQLNHILTQEQLPFEAEALTLLAK--AANGSMRDALSLTDQAIAFGGGQVMLTQVQTMLGSIDEQHVIALLKA-L 256 (944)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCcccHHHHHHHhCCCCHHHHHHHHHH-H
Confidence 3444555555433 355555555555443 357888888888877664331111 11112222221 2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC
Q 003872 709 KAGRFDEANMLFEQMRTSGINPD 731 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~~g~~p~ 731 (790)
..++++.++.++.+|...|..|.
T Consensus 257 ~~~D~~aaL~~l~~Ll~~G~D~~ 279 (944)
T PRK14949 257 TDADIGVLMQTCAQVLAFGADAQ 279 (944)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHH
Confidence 33566666666666665555443
No 495
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=23.15 E-value=2e+02 Score=18.80 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCCCCccchhHHHHHHHHHHhh
Q 003872 752 HYFLKMMLDSGCTPNHVTDTTLDFLGREIDRL 783 (790)
Q Consensus 752 ~~~~~~m~~~~~~p~~~t~~~l~~l~~~~~~~ 783 (790)
.++..++.+.|++|-++|-++=..+.+.+.+.
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~ 40 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLRKL 40 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHHHH
Confidence 46778888999999999876544444444443
No 496
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.86 E-value=9.9e+02 Score=26.60 Aligned_cols=85 Identities=12% Similarity=-0.003 Sum_probs=46.1
Q ss_pred HHHHHHHHH-HhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH------------HHHHHHHHHh
Q 003872 643 NQAWGVLNE-MGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVM------------YNTLINVLGK 709 (790)
Q Consensus 643 ~~A~~~~~~-m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~------------~~~li~~~~~ 709 (790)
++....+.. +.+.|+..+......++.. ..|++..|...++++..-.+...+... ...++.+ ..
T Consensus 181 ~~i~~~L~~i~~~egi~i~~~al~~la~~--a~G~lr~al~~Ldqliay~g~~It~edV~~llG~~~~~~l~~ll~a-l~ 257 (576)
T PRK14965 181 QKIVDRLRYIADQEGISISDAALALVARK--GDGSMRDSLSTLDQVLAFCGDAVGDDDVAELLGVVDRRLLLDISAA-VF 257 (576)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCCCCHHHHHHHHHH-HH
Confidence 344444443 3345666666665555433 348888888888887665432222221 1122222 23
Q ss_pred cCCHHHHHHHHHHHHhcCCCC
Q 003872 710 AGRFDEANMLFEQMRTSGINP 730 (790)
Q Consensus 710 ~g~~~~A~~~~~~m~~~g~~p 730 (790)
.++..+|..+++++...|..|
T Consensus 258 ~~d~~~al~~l~~l~~~G~~~ 278 (576)
T PRK14965 258 GRDTRALLEIVERVDEFGYNM 278 (576)
T ss_pred cCCHHHHHHHHHHHHHhCCCH
Confidence 466777777777777665553
No 497
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=22.80 E-value=4.6e+02 Score=21.99 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHHHHH
Q 003872 716 ANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHYFLK 756 (790)
Q Consensus 716 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 756 (790)
...+|..|...|+--. ..-|......+-..|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5556666766655443 4445566666666777777776664
No 498
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.57 E-value=6e+02 Score=24.37 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=25.7
Q ss_pred HHHHHhccCChHHHHHHHHHHHH----CC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 242 CIHAFGCWGDLHTSLRLFKEMKE----KG-LVPDLHTYNSLIQVLCVVGKVKDALIVWEEL 297 (790)
Q Consensus 242 li~~~~~~g~~~~a~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 297 (790)
+...|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+..+.+.-++
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44445555555555555554421 11 1222333444455555555555555544333
No 499
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=22.52 E-value=1.2e+03 Score=26.56 Aligned_cols=181 Identities=14% Similarity=0.124 Sum_probs=104.2
Q ss_pred hHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChh----------hHHHHHHHHHhcCCHHHHHHHH
Q 003872 580 RVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNY----------TYNSMMSSFVKKGYFNQAWGVL 649 (790)
Q Consensus 580 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----------~~~~li~~~~~~g~~~~A~~~~ 649 (790)
+.....+.-..+++...++-.|....+++...++.+.+... ||.. .|.--++-=-+-||-++|+.+.
T Consensus 190 R~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~ 266 (1226)
T KOG4279|consen 190 RTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTV 266 (1226)
T ss_pred HhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHH
Confidence 33334445567888888999999999999999998888753 3321 2222222223457888998888
Q ss_pred HHHhhc--CCCCCHHHH-----HH--HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhc-CCHHHH
Q 003872 650 NEMGEK--FCPTDIATY-----NV--VIQGLGKMGRADLASTILDKLMKQGGGYLDV---VMYNTLINVLGKA-GRFDEA 716 (790)
Q Consensus 650 ~~m~~~--~~~~~~~~~-----~~--li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~-g~~~~A 716 (790)
-.|.+. .+.||.... -- +-..|...+..+.|.+.|.+..+. .|+. ..+.+|+.+-++. .+-.+-
T Consensus 267 l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev---eP~~~sGIN~atLL~aaG~~Fens~El 343 (1226)
T KOG4279|consen 267 LPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV---EPLEYSGINLATLLRAAGEHFENSLEL 343 (1226)
T ss_pred HHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc---CchhhccccHHHHHHHhhhhccchHHH
Confidence 777654 345665432 11 122355567788899999998874 4544 3455555444432 122222
Q ss_pred HHH---HHHHH-hcCCCCChHHHH---HHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 717 NML---FEQMR-TSGINPDVVTFN---TLIEVNGKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 717 ~~~---~~~m~-~~g~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
..+ +..+. ++|..-+...|. .+..+-.-++++.+|++..+.|.+.+ +|..
T Consensus 344 q~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk-~P~W 400 (1226)
T KOG4279|consen 344 QQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLK-PPVW 400 (1226)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccC-Ccee
Confidence 222 22222 133222222222 23344455788999999999997552 4443
No 500
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=22.41 E-value=9.7e+02 Score=25.59 Aligned_cols=311 Identities=12% Similarity=0.012 Sum_probs=0.0
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-------------HHHHH
Q 003872 298 KGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVME-------------ACQLF 364 (790)
Q Consensus 298 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~-------------a~~l~ 364 (790)
+..+..............-...+.++...+++..+...|.....+.++.-...|.+.|.... +...-
T Consensus 9 ktq~~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~ 88 (696)
T KOG2471|consen 9 KTQAGEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPG 88 (696)
T ss_pred ccccccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhcccc
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHh-
Q 003872 365 EKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK----GKFVDGITFSIVVLQLCREGQIEEALRLVEEMEG- 439 (790)
Q Consensus 365 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~- 439 (790)
+.+......-....+....-.|.....+..|+++...+... .-..-..........+......++|+.++.-+.+
T Consensus 89 ~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~ 168 (696)
T KOG2471|consen 89 DVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEI 168 (696)
T ss_pred chhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------------------CCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhcccccccc
Q 003872 440 ------------------RGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKD 501 (790)
Q Consensus 440 ------------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 501 (790)
.+.-+....-+....+-.+..-.....+.+-+++.
T Consensus 169 ~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~--------------------------- 221 (696)
T KOG2471|consen 169 EAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRN--------------------------- 221 (696)
T ss_pred HHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHH---------------------------
Q ss_pred CCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhH
Q 003872 502 YTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRV 581 (790)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 581 (790)
.-.......
T Consensus 222 -----------------------------------------------------------------------Lk~~krevK 230 (696)
T KOG2471|consen 222 -----------------------------------------------------------------------LKLAKREVK 230 (696)
T ss_pred -----------------------------------------------------------------------HHHHHHhhh
Q ss_pred hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003872 582 QGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHP--------VNYTYNSMMSSFVKKGYFNQAWGVLNEMG 653 (790)
Q Consensus 582 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 653 (790)
+...+...++...----..+-..|++.+|.+++...--...+- +...||-|.-.+.+.|.+..+..+|.+..
T Consensus 231 ~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL 310 (696)
T KOG2471|consen 231 HVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKAL 310 (696)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHH
Q ss_pred h-------cCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 654 E-------KFCPT----------DIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLG 708 (790)
Q Consensus 654 ~-------~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~ 708 (790)
+ .|++| ...+.....-.|...|++-.|.+.|.+.... +..++..|-.|..+|.
T Consensus 311 ~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 311 RNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Done!