Query 003872
Match_columns 790
No_of_seqs 651 out of 4112
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 06:48:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.1E-37 3.8E-42 348.2 41.3 495 117-768 82-584 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.2E-37 7.4E-42 345.9 41.7 494 132-785 66-568 (597)
3 4g26_A Pentatricopeptide repea 100.0 4E-28 1.4E-32 257.6 25.7 195 238-458 28-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 4.7E-28 1.6E-32 257.1 25.4 207 289-495 8-224 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.1E-24 7.1E-29 226.4 47.7 222 245-472 8-229 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 7.8E-24 2.7E-28 222.0 47.7 381 206-709 5-385 (388)
7 2gw1_A Mitochondrial precursor 99.9 1.3E-21 4.3E-26 213.9 41.4 444 201-767 7-482 (514)
8 2gw1_A Mitochondrial precursor 99.9 5.1E-21 1.7E-25 209.0 39.8 234 376-726 237-478 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 3.8E-19 1.3E-23 190.5 42.9 370 270-786 25-441 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 3.6E-19 1.2E-23 190.7 39.7 315 82-418 24-370 (450)
11 3fp2_A TPR repeat-containing p 99.9 2.5E-19 8.5E-24 196.8 38.1 93 84-178 25-117 (537)
12 3fp2_A TPR repeat-containing p 99.9 4.4E-19 1.5E-23 194.9 39.5 331 119-474 25-406 (537)
13 1xi4_A Clathrin heavy chain; a 99.8 5.6E-15 1.9E-19 165.5 55.1 355 48-475 952-1309(1630)
14 3ieg_A DNAJ homolog subfamily 99.8 1.7E-16 6E-21 163.9 41.2 320 307-769 4-341 (359)
15 3ieg_A DNAJ homolog subfamily 99.8 7.6E-16 2.6E-20 159.1 42.1 327 85-456 4-350 (359)
16 2ooe_A Cleavage stimulation fa 99.8 2.8E-15 9.7E-20 163.4 45.6 420 196-761 9-492 (530)
17 2xm6_A Protein corresponding t 99.8 2.4E-14 8.2E-19 154.4 52.4 354 235-729 38-435 (490)
18 2xm6_A Protein corresponding t 99.8 3.2E-14 1.1E-18 153.4 51.9 366 255-764 26-435 (490)
19 2ooe_A Cleavage stimulation fa 99.8 5.5E-15 1.9E-19 161.1 44.9 219 359-691 256-493 (530)
20 1xi4_A Clathrin heavy chain; a 99.8 2.4E-13 8.3E-18 152.5 53.9 463 89-711 929-1415(1630)
21 3hym_B Cell division cycle pro 99.8 1.1E-15 3.6E-20 156.0 32.6 268 118-403 21-297 (330)
22 3hym_B Cell division cycle pro 99.8 1.4E-15 4.8E-20 155.1 33.4 293 151-462 19-321 (330)
23 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-17 3.8E-22 181.3 13.2 136 625-766 126-265 (1134)
24 1fch_A Peroxisomal targeting s 99.7 5.7E-15 1.9E-19 153.2 30.4 256 62-333 40-312 (368)
25 1fch_A Peroxisomal targeting s 99.7 1.7E-15 5.6E-20 157.3 25.6 268 200-473 64-357 (368)
26 4eqf_A PEX5-related protein; a 99.7 1.7E-15 5.8E-20 156.9 25.1 275 376-757 65-352 (365)
27 1b89_A Protein (clathrin heavy 99.7 4.8E-15 1.6E-19 149.1 26.6 239 96-388 15-253 (449)
28 4eqf_A PEX5-related protein; a 99.7 6.2E-15 2.1E-19 152.7 27.2 247 82-334 63-309 (365)
29 3spa_A Mtrpol, DNA-directed RN 99.7 4.9E-17 1.7E-21 176.4 11.4 164 590-759 126-308 (1134)
30 1b89_A Protein (clathrin heavy 99.7 2.1E-15 7.2E-20 151.7 21.6 222 211-474 14-235 (449)
31 3mkr_A Coatomer subunit epsilo 99.7 2.7E-14 9.2E-19 141.4 28.4 163 593-768 103-269 (291)
32 3cv0_A Peroxisome targeting si 99.7 1.7E-14 5.9E-19 146.7 27.2 277 379-759 24-313 (327)
33 3cv0_A Peroxisome targeting si 99.7 5E-14 1.7E-18 143.3 28.1 279 83-401 20-311 (327)
34 4g1t_A Interferon-induced prot 99.6 4.4E-13 1.5E-17 144.2 34.8 393 232-769 47-468 (472)
35 3mkr_A Coatomer subunit epsilo 99.6 7.8E-14 2.7E-18 138.0 24.0 192 202-404 67-263 (291)
36 4g1t_A Interferon-induced prot 99.6 1.5E-12 5.3E-17 139.9 35.2 332 116-474 48-400 (472)
37 3uq3_A Heat shock protein STI1 99.5 4.9E-12 1.7E-16 123.4 25.9 118 604-725 118-235 (258)
38 2pl2_A Hypothetical conserved 99.5 2.5E-12 8.5E-17 121.4 22.2 65 409-474 3-67 (217)
39 3uq3_A Heat shock protein STI1 99.5 6.1E-12 2.1E-16 122.7 25.3 224 84-333 5-234 (258)
40 3e4b_A ALGK; tetratricopeptide 99.5 4.3E-12 1.5E-16 134.3 25.7 144 603-759 263-419 (452)
41 4e6h_A MRNA 3'-END-processing 99.5 1.2E-09 4.1E-14 119.3 45.3 441 171-761 49-570 (679)
42 4e6h_A MRNA 3'-END-processing 99.5 6.7E-10 2.3E-14 121.3 42.9 446 99-691 47-571 (679)
43 2pl2_A Hypothetical conserved 99.5 4.7E-12 1.6E-16 119.4 22.0 199 117-333 3-212 (217)
44 3e4b_A ALGK; tetratricopeptide 99.5 9.3E-12 3.2E-16 131.8 26.3 375 205-725 8-420 (452)
45 2ho1_A Type 4 fimbrial biogene 99.5 3.2E-11 1.1E-15 117.2 26.8 174 590-769 70-244 (252)
46 3u4t_A TPR repeat-containing p 99.5 2.4E-11 8.2E-16 119.6 25.9 164 594-761 77-250 (272)
47 1ouv_A Conserved hypothetical 99.4 1.4E-10 5E-15 114.0 31.4 155 594-761 77-251 (273)
48 2ho1_A Type 4 fimbrial biogene 99.4 5E-11 1.7E-15 115.8 27.7 201 84-335 37-238 (252)
49 2vq2_A PILW, putative fimbrial 99.4 5.6E-11 1.9E-15 113.0 26.5 175 590-769 41-217 (225)
50 2vq2_A PILW, putative fimbrial 99.4 4.6E-11 1.6E-15 113.6 25.7 200 119-334 8-210 (225)
51 1ouv_A Conserved hypothetical 99.4 4.2E-10 1.5E-14 110.6 33.0 224 235-476 5-252 (273)
52 1xnf_A Lipoprotein NLPI; TPR, 99.4 5.4E-12 1.8E-16 124.5 18.8 249 211-469 16-269 (275)
53 2h6f_A Protein farnesyltransfe 99.4 7.6E-11 2.6E-15 120.5 27.2 231 83-332 96-344 (382)
54 2h6f_A Protein farnesyltransfe 99.4 9E-11 3.1E-15 120.0 27.5 249 118-386 96-363 (382)
55 3u4t_A TPR repeat-containing p 99.4 6.4E-11 2.2E-15 116.5 25.7 236 154-405 3-250 (272)
56 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.2E-11 4.2E-16 121.9 20.3 222 96-335 17-244 (275)
57 2q7f_A YRRB protein; TPR, prot 99.4 2.2E-11 7.5E-16 117.5 21.1 129 627-759 92-220 (243)
58 2q7f_A YRRB protein; TPR, prot 99.4 3.3E-11 1.1E-15 116.3 21.4 202 82-300 21-222 (243)
59 3sf4_A G-protein-signaling mod 99.4 5.2E-11 1.8E-15 125.0 24.1 159 590-748 186-363 (406)
60 4a1s_A PINS, partner of inscut 99.4 2.9E-11 9.8E-16 127.3 21.5 277 379-761 51-372 (411)
61 3sf4_A G-protein-signaling mod 99.4 4E-11 1.4E-15 125.9 22.0 280 375-760 8-335 (406)
62 4a1s_A PINS, partner of inscut 99.4 3.7E-11 1.3E-15 126.4 21.2 137 590-726 222-372 (411)
63 3ro2_A PINS homolog, G-protein 99.3 4.9E-11 1.7E-15 121.4 20.6 275 381-761 10-332 (338)
64 2ond_A Cleavage stimulation fa 99.3 9.9E-10 3.4E-14 110.0 29.5 172 589-767 97-274 (308)
65 3vtx_A MAMA; tetratricopeptide 99.3 1.8E-10 6.2E-15 105.5 21.7 172 589-767 3-174 (184)
66 2ond_A Cleavage stimulation fa 99.3 1.3E-09 4.4E-14 109.1 29.1 220 393-726 33-270 (308)
67 3ro2_A PINS homolog, G-protein 99.3 1.8E-10 6.1E-15 117.3 22.9 137 590-726 182-332 (338)
68 3ulq_A Response regulator aspa 99.3 4.7E-10 1.6E-14 116.5 25.6 237 417-760 109-367 (383)
69 3vtx_A MAMA; tetratricopeptide 99.3 7.6E-10 2.6E-14 101.3 21.9 139 588-732 36-174 (184)
70 3ulq_A Response regulator aspa 99.2 9.3E-10 3.2E-14 114.3 24.1 129 343-474 226-367 (383)
71 4abn_A Tetratricopeptide repea 99.2 5.3E-10 1.8E-14 119.1 21.2 163 589-757 135-317 (474)
72 3as5_A MAMA; tetratricopeptide 99.2 1.5E-09 5.3E-14 99.2 21.6 167 590-761 7-173 (186)
73 3q15_A PSP28, response regulat 99.2 5E-09 1.7E-13 108.4 27.3 236 417-760 107-364 (378)
74 3nf1_A KLC 1, kinesin light ch 99.2 5.3E-11 1.8E-15 119.7 12.0 181 80-264 23-223 (311)
75 1hz4_A MALT regulatory protein 99.2 2.7E-08 9.3E-13 102.8 30.6 274 383-760 21-321 (373)
76 4abn_A Tetratricopeptide repea 99.2 1.7E-09 6E-14 115.1 21.1 213 216-435 84-316 (474)
77 3nf1_A KLC 1, kinesin light ch 99.1 2.1E-10 7.1E-15 115.3 12.9 178 118-299 26-223 (311)
78 4gyw_A UDP-N-acetylglucosamine 99.1 2.4E-09 8.1E-14 118.6 21.7 168 587-760 5-173 (723)
79 1hz4_A MALT regulatory protein 99.1 3.6E-08 1.2E-12 101.8 28.4 169 124-298 19-201 (373)
80 3q15_A PSP28, response regulat 99.1 1.5E-08 5.3E-13 104.7 24.9 246 82-334 8-289 (378)
81 3as5_A MAMA; tetratricopeptide 99.1 1.3E-08 4.5E-13 92.9 20.9 133 590-726 41-173 (186)
82 4i17_A Hypothetical protein; T 99.1 1.5E-08 5.2E-13 96.3 21.0 175 588-769 4-215 (228)
83 3edt_B KLC 2, kinesin light ch 99.0 9E-09 3.1E-13 101.5 16.5 172 589-760 41-280 (283)
84 4i17_A Hypothetical protein; T 99.0 5.1E-08 1.7E-12 92.6 21.1 99 83-182 6-104 (228)
85 4gyw_A UDP-N-acetylglucosamine 99.0 2E-08 6.9E-13 111.2 20.2 164 83-262 8-171 (723)
86 3qky_A Outer membrane assembly 98.9 1.3E-07 4.5E-12 91.9 22.4 179 587-768 11-229 (261)
87 1qqe_A Vesicular transport pro 98.9 6.1E-08 2.1E-12 95.9 20.2 184 591-780 77-284 (292)
88 3edt_B KLC 2, kinesin light ch 98.9 1.1E-08 3.9E-13 100.7 14.9 234 96-334 13-280 (283)
89 2fo7_A Synthetic consensus TPR 98.9 1E-07 3.5E-12 81.5 18.4 128 629-760 4-131 (136)
90 2fo7_A Synthetic consensus TPR 98.9 1.2E-07 4.1E-12 81.0 18.4 131 592-726 2-132 (136)
91 2uy1_A Cleavage stimulation fa 98.9 2.1E-06 7.4E-11 91.0 31.3 78 606-689 335-412 (493)
92 2uy1_A Cleavage stimulation fa 98.9 3.4E-06 1.2E-10 89.5 31.9 222 212-475 6-242 (493)
93 3urz_A Uncharacterized protein 98.9 1.1E-07 3.8E-12 88.5 18.0 175 591-773 4-196 (208)
94 3mv2_B Coatomer subunit epsilo 98.8 1.7E-06 5.9E-11 83.4 25.7 169 592-769 101-288 (310)
95 3mv2_B Coatomer subunit epsilo 98.8 3.4E-07 1.1E-11 88.3 20.8 130 235-368 99-238 (310)
96 1qqe_A Vesicular transport pro 98.8 2.6E-07 9E-12 91.3 18.7 175 84-264 37-227 (292)
97 3qky_A Outer membrane assembly 98.8 5.5E-07 1.9E-11 87.4 20.6 187 82-300 13-224 (261)
98 2yhc_A BAMD, UPF0169 lipoprote 98.7 8.3E-07 2.8E-11 83.8 20.1 175 590-768 3-218 (225)
99 2r5s_A Uncharacterized protein 98.7 1.2E-07 4.1E-12 85.7 13.4 162 594-760 9-172 (176)
100 3urz_A Uncharacterized protein 98.7 5.6E-07 1.9E-11 83.7 18.0 160 89-265 9-186 (208)
101 2r5s_A Uncharacterized protein 98.7 2.4E-07 8.3E-12 83.6 14.2 164 85-263 7-171 (176)
102 2yhc_A BAMD, UPF0169 lipoprote 98.7 3.5E-06 1.2E-10 79.5 22.2 202 85-336 5-214 (225)
103 4ga2_A E3 SUMO-protein ligase 98.7 1.5E-07 5.1E-12 82.2 11.3 144 598-747 4-149 (150)
104 3qou_A Protein YBBN; thioredox 98.7 4.7E-07 1.6E-11 89.1 16.1 167 116-298 114-282 (287)
105 3qou_A Protein YBBN; thioredox 98.6 8.3E-07 2.8E-11 87.3 17.4 167 588-759 114-282 (287)
106 2ifu_A Gamma-SNAP; membrane fu 98.6 1.6E-06 5.5E-11 86.3 19.7 158 591-754 76-254 (307)
107 2pzi_A Probable serine/threoni 98.6 8.2E-07 2.8E-11 99.0 18.2 153 588-747 430-583 (681)
108 2pzi_A Probable serine/threoni 98.6 7.1E-07 2.4E-11 99.5 17.5 170 130-318 402-580 (681)
109 2vsy_A XCC0866; transferase, g 98.6 1.2E-06 4E-11 96.1 18.7 150 605-759 3-155 (568)
110 3rjv_A Putative SEL1 repeat pr 98.6 7.8E-06 2.7E-10 76.1 21.6 176 255-442 5-199 (212)
111 3rjv_A Putative SEL1 repeat pr 98.6 5.7E-06 1.9E-10 77.0 20.5 162 590-763 17-199 (212)
112 3dra_A Protein farnesyltransfe 98.6 5.6E-05 1.9E-09 73.7 28.0 170 135-321 49-235 (306)
113 3dra_A Protein farnesyltransfe 98.6 4.2E-05 1.4E-09 74.7 27.0 227 91-334 39-286 (306)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.5 7E-06 2.4E-10 76.6 18.9 130 592-726 7-150 (213)
115 2qfc_A PLCR protein; TPR, HTH, 98.5 9.1E-06 3.1E-10 80.3 20.2 169 591-759 75-264 (293)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.5 6.4E-06 2.2E-10 76.8 18.1 132 628-767 8-154 (213)
117 2vsy_A XCC0866; transferase, g 98.5 5.1E-06 1.8E-10 90.9 19.8 83 390-474 3-85 (568)
118 1a17_A Serine/threonine protei 98.5 4.5E-06 1.5E-10 74.1 16.0 97 592-690 14-110 (166)
119 4ga2_A E3 SUMO-protein ligase 98.5 1.2E-06 4E-11 76.4 11.7 142 208-355 5-148 (150)
120 4gco_A Protein STI-1; structur 98.5 5.7E-06 2E-10 69.4 15.2 99 590-690 12-110 (126)
121 1a17_A Serine/threonine protei 98.4 1E-05 3.4E-10 71.8 16.9 130 626-759 13-144 (166)
122 2ifu_A Gamma-SNAP; membrane fu 98.4 7.6E-06 2.6E-10 81.4 17.4 173 591-767 36-227 (307)
123 3gyz_A Chaperone protein IPGC; 98.4 7.9E-06 2.7E-10 70.7 15.1 99 589-689 34-132 (151)
124 3u3w_A Transcriptional activat 98.4 2E-05 6.7E-10 77.8 20.1 167 594-760 78-265 (293)
125 1na0_A Designed protein CTPR3; 98.4 1.4E-05 4.8E-10 66.7 16.3 95 628-725 11-105 (125)
126 3gyz_A Chaperone protein IPGC; 98.4 5E-06 1.7E-10 72.0 12.9 96 627-725 37-132 (151)
127 1na0_A Designed protein CTPR3; 98.4 1.5E-05 5.2E-10 66.4 15.8 98 591-690 9-106 (125)
128 4gco_A Protein STI-1; structur 98.4 1.5E-05 5.2E-10 66.7 15.5 95 628-725 15-109 (126)
129 2lni_A Stress-induced-phosphop 98.4 1.4E-05 4.8E-10 67.7 15.6 101 588-690 13-113 (133)
130 2e2e_A Formate-dependent nitri 98.3 8.1E-06 2.8E-10 73.5 14.6 119 639-761 23-144 (177)
131 3gw4_A Uncharacterized protein 98.3 4.6E-06 1.6E-10 77.1 13.3 158 602-760 3-175 (203)
132 2vyi_A SGTA protein; chaperone 98.3 1.3E-05 4.5E-10 67.5 14.9 118 590-711 11-128 (131)
133 2vgx_A Chaperone SYCD; alterna 98.3 5.7E-06 2E-10 71.7 12.4 97 661-760 21-117 (148)
134 2qfc_A PLCR protein; TPR, HTH, 98.3 2.2E-05 7.6E-10 77.4 18.3 172 85-262 76-263 (293)
135 2lni_A Stress-induced-phosphop 98.3 1.8E-05 6.2E-10 67.0 15.1 119 623-746 13-132 (133)
136 3u3w_A Transcriptional activat 98.3 8.2E-05 2.8E-09 73.3 22.0 162 207-368 82-264 (293)
137 2e2e_A Formate-dependent nitri 98.3 6.6E-06 2.3E-10 74.1 12.6 121 602-726 21-144 (177)
138 2vyi_A SGTA protein; chaperone 98.3 2E-05 6.8E-10 66.4 14.9 119 625-747 11-129 (131)
139 3q7a_A Farnesyltransferase alp 98.3 0.00044 1.5E-08 68.2 26.0 83 98-182 68-153 (349)
140 3q7a_A Farnesyltransferase alp 98.3 0.00044 1.5E-08 68.2 26.0 177 209-391 63-257 (349)
141 2vgx_A Chaperone SYCD; alterna 98.3 1.7E-05 5.8E-10 68.7 14.4 102 588-691 18-119 (148)
142 3sz7_A HSC70 cochaperone (SGT) 98.3 2.4E-05 8.4E-10 69.2 15.8 98 625-725 10-107 (164)
143 3q49_B STIP1 homology and U bo 98.2 7E-05 2.4E-09 63.8 17.6 99 659-760 7-105 (137)
144 1p5q_A FKBP52, FK506-binding p 98.2 2.7E-05 9.2E-10 78.3 16.5 130 627-759 148-292 (336)
145 1p5q_A FKBP52, FK506-binding p 98.2 2.8E-05 9.5E-10 78.2 16.6 134 589-725 145-293 (336)
146 3gw4_A Uncharacterized protein 98.2 2E-05 6.9E-10 72.7 14.4 136 590-725 25-175 (203)
147 2c2l_A CHIP, carboxy terminus 98.2 1.2E-05 4.2E-10 78.6 13.1 100 83-184 3-102 (281)
148 2xcb_A PCRH, regulatory protei 98.2 2.7E-05 9.3E-10 66.9 13.8 102 588-691 15-116 (142)
149 2xcb_A PCRH, regulatory protei 98.2 4.3E-05 1.5E-09 65.6 15.0 95 663-760 20-114 (142)
150 4f3v_A ESX-1 secretion system 98.2 4.2E-05 1.4E-09 72.8 15.7 126 632-761 108-237 (282)
151 3sz7_A HSC70 cochaperone (SGT) 98.2 4.2E-05 1.4E-09 67.7 15.0 108 588-697 8-115 (164)
152 4f3v_A ESX-1 secretion system 98.2 4.6E-05 1.6E-09 72.5 15.7 200 131-335 18-237 (282)
153 2fbn_A 70 kDa peptidylprolyl i 98.2 4.4E-06 1.5E-10 76.9 8.5 155 602-760 15-185 (198)
154 1elr_A TPR2A-domain of HOP; HO 98.1 5.3E-05 1.8E-09 63.7 14.5 98 662-761 5-108 (131)
155 3upv_A Heat shock protein STI1 98.1 6.8E-05 2.3E-09 62.8 14.8 94 629-725 7-100 (126)
156 2c2l_A CHIP, carboxy terminus 98.1 2.9E-05 9.8E-10 75.9 13.9 100 590-691 3-102 (281)
157 4gcn_A Protein STI-1; structur 98.1 6.4E-05 2.2E-09 63.0 14.2 54 633-687 15-68 (127)
158 4gcn_A Protein STI-1; structur 98.1 2.6E-05 8.7E-10 65.5 11.7 105 661-769 8-118 (127)
159 3dss_A Geranylgeranyl transfer 98.1 0.0011 3.8E-08 65.0 24.7 172 588-768 105-309 (331)
160 1elw_A TPR1-domain of HOP; HOP 98.1 0.00015 5.3E-09 59.4 16.2 91 666-759 9-99 (118)
161 3upv_A Heat shock protein STI1 98.1 7.7E-05 2.6E-09 62.4 14.4 96 662-760 5-100 (126)
162 1elw_A TPR1-domain of HOP; HOP 98.1 0.00015 5.1E-09 59.5 15.6 96 627-725 5-100 (118)
163 2kck_A TPR repeat; tetratricop 98.1 5.2E-05 1.8E-09 61.6 12.5 97 662-761 7-106 (112)
164 3q49_B STIP1 homology and U bo 98.1 0.00017 5.7E-09 61.3 16.0 99 624-725 7-105 (137)
165 2kck_A TPR repeat; tetratricop 98.0 7.6E-05 2.6E-09 60.6 12.6 99 625-726 5-106 (112)
166 2fbn_A 70 kDa peptidylprolyl i 98.0 0.00011 3.6E-09 67.5 14.8 132 590-725 37-185 (198)
167 1elr_A TPR2A-domain of HOP; HO 98.0 5.7E-05 2E-09 63.5 11.9 96 593-689 6-107 (131)
168 2dba_A Smooth muscle cell asso 98.0 0.00039 1.3E-08 59.8 17.0 95 627-725 29-127 (148)
169 3ro3_A PINS homolog, G-protein 98.0 5.3E-05 1.8E-09 66.6 11.3 97 663-759 51-156 (164)
170 2dba_A Smooth muscle cell asso 97.9 0.00036 1.2E-08 60.1 16.2 114 588-706 25-142 (148)
171 4b4t_Q 26S proteasome regulato 97.9 0.00044 1.5E-08 72.6 19.2 129 597-725 101-244 (434)
172 3dss_A Geranylgeranyl transfer 97.9 0.0059 2E-07 59.9 25.4 135 95-245 40-188 (331)
173 3ro3_A PINS homolog, G-protein 97.9 0.00013 4.3E-09 64.1 12.1 136 590-725 8-157 (164)
174 1hxi_A PEX5, peroxisome target 97.9 0.00015 5.3E-09 60.0 11.7 94 629-725 20-113 (121)
175 3rkv_A Putative peptidylprolyl 97.8 0.00023 8E-09 62.6 13.2 86 697-785 63-150 (162)
176 1hxi_A PEX5, peroxisome target 97.8 0.00024 8.3E-09 58.7 11.9 93 595-689 21-113 (121)
177 3k9i_A BH0479 protein; putativ 97.8 4.9E-05 1.7E-09 62.6 7.5 85 605-690 4-90 (117)
178 4b4t_Q 26S proteasome regulato 97.8 0.00074 2.5E-08 70.8 18.4 170 157-332 58-242 (434)
179 2xev_A YBGF; tetratricopeptide 97.8 0.00074 2.5E-08 56.4 14.6 92 597-690 8-105 (129)
180 3k9i_A BH0479 protein; putativ 97.7 5.6E-05 1.9E-09 62.3 6.9 87 96-183 2-90 (117)
181 2xev_A YBGF; tetratricopeptide 97.7 0.00076 2.6E-08 56.4 14.3 92 668-761 9-105 (129)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00017 5.7E-09 76.0 11.8 132 83-227 267-413 (457)
183 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00041 1.4E-08 73.0 14.7 129 627-759 269-413 (457)
184 1wao_1 Serine/threonine protei 97.6 0.00019 6.5E-09 75.9 10.7 122 598-721 13-134 (477)
185 2hr2_A Hypothetical protein; a 97.6 0.00068 2.3E-08 57.9 11.9 97 664-760 14-130 (159)
186 3rkv_A Putative peptidylprolyl 97.6 0.00087 3E-08 58.9 13.3 68 661-732 63-130 (162)
187 1wao_1 Serine/threonine protei 97.6 0.00017 5.8E-09 76.3 10.0 120 632-756 12-134 (477)
188 1ihg_A Cyclophilin 40; ppiase 97.6 0.00072 2.5E-08 68.7 14.2 138 592-753 224-362 (370)
189 1klx_A Cysteine rich protein B 97.6 0.002 6.9E-08 54.5 14.8 110 606-727 10-127 (138)
190 1klx_A Cysteine rich protein B 97.6 0.0021 7.1E-08 54.5 14.7 114 639-764 8-129 (138)
191 1dce_A Protein (RAB geranylger 97.6 0.0018 6.3E-08 69.7 17.5 171 605-782 43-241 (567)
192 1ihg_A Cyclophilin 40; ppiase 97.5 0.00073 2.5E-08 68.6 12.9 89 696-787 272-361 (370)
193 2if4_A ATFKBP42; FKBP-like, al 97.5 0.0004 1.4E-08 69.7 9.9 148 590-760 178-327 (338)
194 2hr2_A Hypothetical protein; a 97.4 0.0056 1.9E-07 52.2 15.2 63 663-725 59-130 (159)
195 2kat_A Uncharacterized protein 97.4 0.00086 3E-08 54.7 9.4 79 610-690 4-82 (115)
196 3n71_A Histone lysine methyltr 97.3 0.00087 3E-08 70.3 11.1 127 635-761 318-464 (490)
197 2l6j_A TPR repeat-containing p 97.3 0.00022 7.6E-09 57.8 4.9 89 661-753 4-99 (111)
198 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00064 2.2E-08 68.2 9.1 97 627-726 231-328 (338)
199 3n71_A Histone lysine methyltr 97.2 0.0011 3.8E-08 69.5 10.6 130 94-228 319-463 (490)
200 2kat_A Uncharacterized protein 97.2 0.0033 1.1E-07 51.1 11.0 77 645-724 4-80 (115)
201 1dce_A Protein (RAB geranylger 97.2 0.022 7.5E-07 61.3 20.2 156 590-750 62-244 (567)
202 1na3_A Designed protein CTPR2; 97.1 0.0062 2.1E-07 46.7 11.0 62 592-654 10-71 (91)
203 1na3_A Designed protein CTPR2; 97.0 0.009 3.1E-07 45.7 11.4 61 663-725 11-71 (91)
204 3ma5_A Tetratricopeptide repea 97.0 0.003 1E-07 49.9 8.3 61 590-651 6-66 (100)
205 1zu2_A Mitochondrial import re 96.9 0.0029 1E-07 53.8 8.3 59 677-739 62-131 (158)
206 2l6j_A TPR repeat-containing p 96.9 0.003 1E-07 50.8 8.2 65 625-690 3-67 (111)
207 3ma5_A Tetratricopeptide repea 96.9 0.0043 1.5E-07 48.9 8.7 63 660-724 6-68 (100)
208 3ly7_A Transcriptional activat 96.9 0.012 4.1E-07 57.9 13.4 145 623-773 191-349 (372)
209 1zu2_A Mitochondrial import re 96.9 0.0055 1.9E-07 52.2 9.4 98 130-243 13-131 (158)
210 3ly7_A Transcriptional activat 96.5 0.042 1.5E-06 54.0 14.1 63 235-299 276-338 (372)
211 3lvg_A Clathrin heavy chain 1; 96.3 1.4E-06 4.8E-11 86.4 -18.4 234 82-364 52-285 (624)
212 3qwp_A SET and MYND domain-con 96.3 0.019 6.5E-07 59.2 11.1 112 670-781 296-424 (429)
213 3qww_A SET and MYND domain-con 96.1 0.016 5.6E-07 59.5 9.3 97 673-769 310-422 (433)
214 1pc2_A Mitochondria fission pr 96.0 0.087 3E-06 44.3 11.6 88 677-769 14-106 (152)
215 2kc7_A BFR218_protein; tetratr 95.9 0.022 7.4E-07 44.5 7.1 56 669-726 8-64 (99)
216 3u64_A Protein TP_0956; tetrat 95.8 0.39 1.3E-05 45.2 16.2 83 677-764 179-272 (301)
217 1wy6_A Hypothetical protein ST 95.8 0.59 2E-05 37.7 14.9 62 596-658 96-157 (172)
218 3mkq_A Coatomer beta'-subunit; 95.7 0.66 2.3E-05 52.7 21.7 76 380-473 633-708 (814)
219 3qwp_A SET and MYND domain-con 95.7 0.03 1E-06 57.7 9.0 93 633-725 294-399 (429)
220 3qww_A SET and MYND domain-con 95.6 0.042 1.4E-06 56.5 9.7 94 166-263 310-409 (433)
221 4ady_A RPN2, 26S proteasome re 95.6 4 0.00014 45.7 35.7 26 156-181 232-257 (963)
222 3mkq_A Coatomer beta'-subunit; 95.6 0.3 1E-05 55.6 18.0 104 240-370 633-736 (814)
223 3mkq_B Coatomer subunit alpha; 95.5 1 3.5E-05 38.8 16.4 130 599-759 13-142 (177)
224 3bee_A Putative YFRE protein; 95.2 0.14 4.9E-06 39.2 9.4 65 590-655 5-72 (93)
225 2kc7_A BFR218_protein; tetratr 95.1 0.15 5E-06 39.5 9.7 58 633-691 7-65 (99)
226 4h7y_A Dual specificity protei 95.1 0.27 9.4E-06 40.6 10.9 104 623-729 10-126 (161)
227 3bee_A Putative YFRE protein; 95.0 0.35 1.2E-05 37.0 11.0 65 152-228 4-71 (93)
228 2v5f_A Prolyl 4-hydroxylase su 94.9 0.26 8.8E-06 38.7 10.5 70 698-769 6-81 (104)
229 4h7y_A Dual specificity protei 94.9 0.45 1.6E-05 39.3 11.6 115 586-704 8-135 (161)
230 1pc2_A Mitochondria fission pr 94.8 0.17 5.6E-06 42.6 9.3 83 607-691 14-101 (152)
231 2v5f_A Prolyl 4-hydroxylase su 94.8 0.29 9.8E-06 38.5 10.4 66 118-183 4-75 (104)
232 3u64_A Protein TP_0956; tetrat 94.7 0.51 1.7E-05 44.4 13.1 105 642-759 179-296 (301)
233 3mkq_B Coatomer subunit alpha; 94.6 2 6.9E-05 37.0 16.7 45 282-332 16-60 (177)
234 1nzn_A CGI-135 protein, fissio 94.6 0.31 1E-05 39.3 9.8 100 672-776 12-116 (126)
235 1nzn_A CGI-135 protein, fissio 93.8 0.43 1.5E-05 38.4 9.3 85 606-691 16-104 (126)
236 1wy6_A Hypothetical protein ST 93.5 2.5 8.6E-05 34.1 16.1 67 270-337 90-156 (172)
237 3lvg_A Clathrin heavy chain 1; 93.4 0.00095 3.3E-08 66.7 -8.1 218 63-331 70-287 (624)
238 3o48_A Mitochondria fission 1 93.3 1.4 4.9E-05 35.6 11.3 84 693-778 36-122 (134)
239 1y8m_A FIS1; mitochondria, unk 91.8 4.6 0.00016 33.1 13.4 81 694-776 36-119 (144)
240 1v54_E Cytochrome C oxidase po 91.1 3.4 0.00012 31.3 10.1 80 83-163 7-88 (109)
241 4gns_B Protein CSD3, chitin bi 91.0 1.2 4.1E-05 48.7 11.3 128 593-724 250-398 (754)
242 4gns_B Protein CSD3, chitin bi 90.8 1.5 5.2E-05 48.0 11.9 128 630-759 252-398 (754)
243 1v54_E Cytochrome C oxidase po 89.6 5.2 0.00018 30.3 10.0 71 712-783 25-96 (109)
244 4ady_A RPN2, 26S proteasome re 89.3 32 0.0011 38.6 34.7 138 596-742 529-671 (963)
245 2ff4_A Probable regulatory pro 88.1 4 0.00014 41.1 12.1 79 664-744 174-257 (388)
246 2y69_E Cytochrome C oxidase su 88.1 5.9 0.0002 31.9 10.0 81 82-163 49-131 (152)
247 2ff4_A Probable regulatory pro 87.8 2.1 7.3E-05 43.2 9.8 74 700-774 174-252 (388)
248 1qsa_A Protein (soluble lytic 86.8 37 0.0013 36.4 23.7 20 600-619 390-409 (618)
249 4b4t_P 26S proteasome regulato 86.7 31 0.001 35.4 21.3 61 168-234 30-90 (445)
250 2y69_E Cytochrome C oxidase su 86.2 9 0.00031 30.9 10.0 70 713-783 69-139 (152)
251 3ffl_A Anaphase-promoting comp 84.4 18 0.00061 30.6 12.2 133 628-778 22-163 (167)
252 4fhn_B Nucleoporin NUP120; pro 81.5 21 0.00072 42.0 15.7 151 203-362 815-992 (1139)
253 3o48_A Mitochondria fission 1 79.8 14 0.00048 29.9 9.1 68 623-690 37-107 (134)
254 1y8m_A FIS1; mitochondria, unk 78.9 26 0.00087 28.8 11.6 68 623-690 36-106 (144)
255 3ffl_A Anaphase-promoting comp 78.6 12 0.00039 31.8 8.7 22 206-227 128-149 (167)
256 4b4t_P 26S proteasome regulato 78.3 63 0.0022 33.0 20.7 168 592-759 138-322 (445)
257 4b4t_R RPN7, 26S proteasome re 77.0 52 0.0018 33.5 15.2 185 594-780 134-333 (429)
258 2wpv_A GET4, UPF0363 protein Y 75.8 57 0.002 31.2 20.4 81 375-474 133-216 (312)
259 4b4t_R RPN7, 26S proteasome re 75.5 23 0.0008 36.0 12.1 99 627-725 132-236 (429)
260 4fhn_B Nucleoporin NUP120; pro 74.4 60 0.002 38.1 16.7 148 595-749 816-988 (1139)
261 1zbp_A Hypothetical protein VP 72.9 21 0.00071 33.1 9.6 51 131-182 9-59 (273)
262 3esl_A Checkpoint serine/threo 72.0 27 0.00094 30.6 9.7 76 657-732 73-150 (202)
263 3esl_A Checkpoint serine/threo 69.7 52 0.0018 28.9 10.9 57 639-696 92-149 (202)
264 2p58_C Putative type III secre 69.6 30 0.001 26.2 7.8 12 673-684 52-63 (116)
265 2p58_C Putative type III secre 68.2 24 0.00082 26.7 7.1 78 675-762 21-99 (116)
266 2uwj_G Type III export protein 66.7 29 0.001 26.2 7.2 11 673-683 51-61 (115)
267 2uwj_G Type III export protein 64.1 24 0.00082 26.6 6.4 78 675-762 20-98 (115)
268 3eiq_C Programmed cell death p 61.0 98 0.0034 30.3 12.3 77 379-456 220-298 (358)
269 3lpz_A GET4 (YOR164C homolog); 58.4 1.3E+02 0.0046 28.9 23.3 82 589-689 134-215 (336)
270 1zbp_A Hypothetical protein VP 57.9 33 0.0011 31.8 7.8 118 634-761 5-129 (273)
271 2wpv_A GET4, UPF0363 protein Y 57.9 1.3E+02 0.0045 28.7 21.0 82 590-690 133-217 (312)
272 4a1g_A Mitotic checkpoint seri 54.5 93 0.0032 25.9 9.5 51 715-765 83-134 (152)
273 2wvi_A Mitotic checkpoint seri 53.3 82 0.0028 26.6 8.9 52 716-767 79-131 (164)
274 4a1g_A Mitotic checkpoint seri 53.1 99 0.0034 25.7 9.7 52 680-731 84-135 (152)
275 2jul_A Calsenilin; EF-hand, ca 51.5 1E+02 0.0035 28.4 10.7 172 45-225 72-254 (256)
276 2wvi_A Mitotic checkpoint seri 47.4 1.3E+02 0.0044 25.4 9.8 53 680-732 79-131 (164)
277 1s6c_A KV4 potassium channel-i 45.9 1E+02 0.0034 26.3 9.2 87 78-164 32-121 (183)
278 3lpz_A GET4 (YOR164C homolog); 45.0 2.2E+02 0.0075 27.4 22.6 25 270-294 135-159 (336)
279 2zu6_B Programmed cell death p 41.7 76 0.0026 30.3 7.9 71 379-450 169-241 (307)
280 1wdy_A 2-5A-dependent ribonucl 39.4 70 0.0024 29.7 7.7 18 206-223 8-25 (285)
281 2nsz_A Programmed cell death p 39.2 1.1E+02 0.0039 24.5 7.6 68 663-732 9-78 (129)
282 3eiq_C Programmed cell death p 37.2 3E+02 0.01 26.8 13.5 26 87-112 57-82 (358)
283 1qsa_A Protein (soluble lytic 36.7 4.2E+02 0.014 28.3 37.7 50 668-721 388-437 (618)
284 2nsz_A Programmed cell death p 36.2 1.1E+02 0.0037 24.6 6.9 63 310-373 11-75 (129)
285 3eu9_A Huntingtin-interacting 34.7 40 0.0014 30.4 4.9 18 454-471 215-232 (240)
286 2xig_A Ferric uptake regulatio 33.1 1.8E+02 0.0063 24.0 8.2 64 108-172 16-79 (150)
287 1wdy_A 2-5A-dependent ribonucl 32.9 49 0.0017 30.9 5.3 208 241-470 7-240 (285)
288 2keb_A DNA polymerase subunit 32.6 1.1E+02 0.0037 23.0 5.5 32 716-747 28-59 (101)
289 4aez_C MAD3, mitotic spindle c 32.6 1.5E+02 0.0051 26.5 7.7 53 714-766 131-184 (223)
290 1k1a_A B-cell lymphoma 3-encod 32.0 1.4E+02 0.0049 26.6 8.3 22 207-228 13-34 (241)
291 2ion_A PDCD4, programmed cell 30.3 1.1E+02 0.0038 25.5 6.2 70 663-734 11-82 (152)
292 2fe3_A Peroxide operon regulat 29.4 1.8E+02 0.0061 23.9 7.5 64 108-172 11-74 (145)
293 2ion_A PDCD4, programmed cell 29.1 94 0.0032 25.9 5.6 63 309-372 12-76 (152)
294 3dd4_A KV channel-interacting 28.9 3.1E+02 0.011 24.4 11.3 120 45-164 45-167 (229)
295 1k1a_A B-cell lymphoma 3-encod 28.9 1.3E+02 0.0043 27.0 7.3 47 243-289 13-61 (241)
296 3kea_A K1L; tropism, ANK repea 28.7 1.2E+02 0.004 28.5 7.1 142 243-401 35-183 (285)
297 2d2s_A Exocyst complex compone 28.6 2.6E+02 0.009 25.3 8.9 45 427-474 75-119 (235)
298 1ug3_A EIF4GI, eukaryotic prot 28.1 4.2E+02 0.014 25.6 12.2 23 345-367 15-37 (339)
299 2d2s_A Exocyst complex compone 27.9 3.1E+02 0.011 24.8 9.3 28 340-367 90-117 (235)
300 2cos_A Serine/threonine protei 27.2 54 0.0018 21.4 2.8 38 717-759 10-49 (54)
301 3eu9_A Huntingtin-interacting 27.2 1.1E+02 0.0039 27.2 6.7 206 208-439 14-235 (240)
302 4aez_C MAD3, mitotic spindle c 27.2 1.6E+02 0.0054 26.4 6.9 54 678-731 131-184 (223)
303 3jxi_A Vanilloid receptor-rela 26.9 26 0.00088 32.5 2.0 24 247-270 13-36 (260)
304 2fe3_A Peroxide operon regulat 26.7 2E+02 0.0067 23.6 7.3 60 402-462 13-72 (145)
305 3t8k_A Uncharacterized protein 26.2 2.7E+02 0.0092 23.8 8.5 92 210-305 13-108 (186)
306 3kae_A CDC27, possible protein 26.1 2.5E+02 0.0084 23.9 7.2 52 670-722 71-139 (242)
307 1ug3_A EIF4GI, eukaryotic prot 26.1 3.2E+02 0.011 26.4 9.7 24 204-227 15-38 (339)
308 3kea_A K1L; tropism, ANK repea 25.5 2.4E+02 0.0083 26.2 8.8 144 207-367 35-184 (285)
309 3pvs_A Replication-associated 25.5 5.4E+02 0.018 26.0 13.1 55 318-372 267-326 (447)
310 3ltj_A Alpharep-4; protein eng 25.3 3.2E+02 0.011 23.4 17.7 174 117-322 26-199 (201)
311 1s1e_A KV channel interacting 25.2 3.6E+02 0.012 23.9 10.1 121 44-164 31-154 (224)
312 1iqp_A RFCS; clamp loader, ext 25.2 4.3E+02 0.015 24.9 10.8 88 641-731 170-270 (327)
313 2r9g_A AAA ATPase, central reg 24.9 3.5E+02 0.012 23.7 9.3 18 249-266 27-44 (204)
314 3txn_A 26S proteasome regulato 24.6 5.2E+02 0.018 25.6 24.7 62 592-653 140-208 (394)
315 2fu4_A Ferric uptake regulatio 24.1 2E+02 0.0067 20.5 7.0 61 110-171 8-69 (83)
316 1sxj_D Activator 1 41 kDa subu 24.0 4.8E+02 0.016 24.9 11.1 88 642-732 194-299 (353)
317 4ets_A Ferric uptake regulatio 23.4 1.6E+02 0.0055 24.8 6.2 68 218-286 15-84 (162)
318 2xig_A Ferric uptake regulatio 23.3 1.8E+02 0.0062 24.0 6.4 60 402-462 18-77 (150)
319 3jxi_A Vanilloid receptor-rela 23.1 34 0.0012 31.6 2.1 188 277-474 8-250 (260)
320 1mzb_A Ferric uptake regulatio 23.0 2.1E+02 0.0071 23.1 6.6 62 110-172 9-71 (136)
321 2fu4_A Ferric uptake regulatio 22.9 2E+02 0.007 20.4 6.0 29 432-460 38-66 (83)
322 3eyy_A Putative iron uptake re 22.7 1.7E+02 0.0059 24.0 6.1 59 402-462 10-68 (145)
323 1oai_A Nuclear RNA export fact 22.6 69 0.0024 21.5 2.8 25 213-237 33-57 (59)
324 1mzb_A Ferric uptake regulatio 22.5 2E+02 0.0068 23.2 6.4 60 402-462 9-69 (136)
325 4b4t_S RPN3, 26S proteasome re 22.3 5E+02 0.017 26.8 10.4 65 119-183 231-299 (523)
326 3hra_A Ankyrin repeat family p 22.2 1.6E+02 0.0056 25.3 6.5 16 93-108 11-26 (201)
327 3bge_A Predicted ATPase; struc 21.7 4E+02 0.014 23.2 8.0 93 242-334 10-110 (201)
328 4ets_A Ferric uptake regulatio 21.4 1.5E+02 0.0053 24.9 5.6 62 110-172 24-87 (162)
329 2zu6_B Programmed cell death p 20.9 5.4E+02 0.019 24.4 12.1 67 700-767 169-237 (307)
330 2w57_A Ferric uptake regulatio 20.7 2.1E+02 0.0073 23.6 6.3 63 109-172 7-70 (150)
331 2chq_A Replication factor C sm 20.7 5.2E+02 0.018 24.1 11.9 98 676-776 162-272 (319)
332 3eyy_A Putative iron uptake re 20.5 2.1E+02 0.007 23.5 6.1 62 109-172 9-70 (145)
333 2f6m_A Suppressor protein STP2 20.5 87 0.003 21.5 2.9 44 123-167 6-49 (65)
334 2ijq_A Hypothetical protein; s 20.4 3.7E+02 0.013 22.6 7.5 62 86-148 35-104 (161)
335 2o03_A Probable zinc uptake re 20.1 1.7E+02 0.0057 23.5 5.4 45 124-168 15-59 (131)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-37 Score=348.23 Aligned_cols=495 Identities=11% Similarity=-0.017 Sum_probs=340.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccccc
Q 003872 117 VDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
++...|+.++..|.+.|++++|+.+|+++.... |+..++..++.+|.+.|++++|..+|+++.. .
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~ 146 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDL-------------Y 146 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG-------------G
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhc-------------c
Confidence 456777888888888888888888888777543 5667777777888888888888777776543 3
Q ss_pred CCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 197 LPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 197 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
+++..+++.++.+|.+.|++++|.++|+++.... .. ..++.+.++ ...|..++..+|+.
T Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~-----~~~~~~~~~-----------~~~~~~~~~~~~~~ 205 (597)
T 2xpi_A 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR-----KD-----EKNANKLLM-----------QDGGIKLEASMCYL 205 (597)
T ss_dssp GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC--------------------C-----------CCSSCCHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc-----cc-----ccccccccc-----------cccccchhHHHHHH
Confidence 4556677777777777777777777776422111 00 000000000 01233445556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH--HHH-HHHHHHCCCCCCHHHHHHHHHHHHh
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDA--MKI-FSEMQYNGLIPDTVVYNSLLNGMFK 353 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a--~~~-~~~m~~~~~~p~~~~~~~li~~~~~ 353 (790)
++.+|.+.|++++|.++|+++.+.+ +.+...+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+
T Consensus 206 l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (597)
T 2xpi_A 206 RGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSH 284 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcC
Confidence 6666666666666666666665543 22344444444333322221111 111 3444444334445556666777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 003872 354 SRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRL 433 (790)
Q Consensus 354 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 433 (790)
.|++++|.++|+++.+. +++..+++.++..|.+.|++++|..+|+++.+.+.. +..++..++.++.+.|++++|..+
T Consensus 285 ~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 285 EDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp HHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred cchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHH
Confidence 77777777777777654 467777777778888888888888888777765433 666777778888888888888888
Q ss_pred HHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChH
Q 003872 434 VEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLS 513 (790)
Q Consensus 434 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (790)
++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.
T Consensus 362 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------------------------- 402 (597)
T 2xpi_A 362 SNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-------------------------------------- 402 (597)
T ss_dssp HHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------------------------------------
Confidence 88777543 336777777888888888888888888777651
Q ss_pred HHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHH
Q 003872 514 EIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDM 593 (790)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (790)
.+.+...
T Consensus 403 -------------------------------------------------------------------------~~~~~~~ 409 (597)
T 2xpi_A 403 -------------------------------------------------------------------------DPQFGPA 409 (597)
T ss_dssp -------------------------------------------------------------------------CTTCHHH
T ss_pred -------------------------------------------------------------------------CCCCHHH
Confidence 1224566
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK 673 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 673 (790)
|+.++..|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+
T Consensus 410 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 410 WIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFN 487 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 7788888888888888888888887765 5577888888888888888888888888888763 4477888888888888
Q ss_pred cCCHHHHHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCH
Q 003872 674 MGRADLASTILDKLMKQG---GGYLD--VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL 748 (790)
Q Consensus 674 ~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 748 (790)
.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++
T Consensus 488 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCH
T ss_pred hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCH
Confidence 888888888888887762 25676 7788888888888888888888888888753 33678888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCcc
Q 003872 749 KEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 749 ~~A~~~~~~m~~~~~~p~~~ 768 (790)
++|.++++++.+. .|+..
T Consensus 567 ~~A~~~~~~~l~~--~p~~~ 584 (597)
T 2xpi_A 567 GLAITHLHESLAI--SPNEI 584 (597)
T ss_dssp HHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHhc--CCCCh
Confidence 8888888888864 55543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-37 Score=345.87 Aligned_cols=494 Identities=12% Similarity=-0.006 Sum_probs=383.7
Q ss_pred cCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHH
Q 003872 132 SGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALR 211 (790)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 211 (790)
.|.+..+...+..+. .++...|+.++..|.+.|++++|..+|+++.. ..|+..++..++..|.
T Consensus 66 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-------------~~p~~~~~~~l~~~~~ 128 (597)
T 2xpi_A 66 DGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD-------------ITGNPNDAFWLAQVYC 128 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHCCHHHHHHHHHHHH
T ss_pred cCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh-------------hCCCchHHHHHHHHHH
Confidence 344444444444332 25677889999999999999999999998876 3455677788888888
Q ss_pred hccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 003872 212 KSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDAL 291 (790)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 291 (790)
+.|++++|..+|+.+.. .+++..+++.++.+|.+.|++++|.++|+++. |+.. ....+...+
T Consensus 129 ~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~------ 190 (597)
T 2xpi_A 129 CTGDYARAKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLL------ 190 (597)
T ss_dssp HTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------------
T ss_pred HcCcHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----ccccccccc------
Confidence 88888888888887753 35677888888888888888888888887522 1110 001111111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH--HHH-HHHHH
Q 003872 292 IVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEA--CQL-FEKMV 368 (790)
Q Consensus 292 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a--~~l-~~~~~ 368 (790)
-...+.+.+..+|+.++.+|.+.|++++|.++|++|.+.+. .+...+..+...+...+..+.+ ..+ +..+.
T Consensus 191 -----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 264 (597)
T 2xpi_A 191 -----MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYS 264 (597)
T ss_dssp -----CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHH
T ss_pred -----ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccc
Confidence 11234566789999999999999999999999999998642 2455666666555443332222 222 55666
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHH
Q 003872 369 QDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVT 448 (790)
Q Consensus 369 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 448 (790)
..+..+...+|+.++..|.+.|++++|.++|+++.+. .++..++..++..|.+.|++++|..+|+++.+.+.. +..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ 341 (597)
T 2xpi_A 265 KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDV 341 (597)
T ss_dssp GGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTT
T ss_pred cchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHH
Confidence 6655566677888899999999999999999998876 468999999999999999999999999999987543 7788
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCcccccc
Q 003872 449 ISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDA 528 (790)
Q Consensus 449 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (790)
+..++.++.+.|++++|..+++++.+.
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------------------------------------- 368 (597)
T 2xpi_A 342 YPLHLASLHESGEKNKLYLISNDLVDR----------------------------------------------------- 368 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------------------------------------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhh-----------------------------------------------------
Confidence 999999999999999999999998752
Q ss_pred ccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChH
Q 003872 529 NLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLN 608 (790)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 608 (790)
.+.+..+++.++..|.+.|+++
T Consensus 369 ----------------------------------------------------------~~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 369 ----------------------------------------------------------HPEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp ----------------------------------------------------------CTTSHHHHHHHHHHHHHTTCHH
T ss_pred ----------------------------------------------------------CcccHHHHHHHHHHHHHhccHH
Confidence 1335677888999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 609 LACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLM 688 (790)
Q Consensus 609 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 688 (790)
+|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998765 5578899999999999999999999999999874 4588999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC--hHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 003872 689 KQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS----GINPD--VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSG 762 (790)
Q Consensus 689 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 762 (790)
+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|+++++++.+.+
T Consensus 469 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 469 ALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 874 558899999999999999999999999999875 77888 7899999999999999999999999998764
Q ss_pred CCCCccchhHHHHHHHHHHhhhh
Q 003872 763 CTPNHVTDTTLDFLGREIDRLKD 785 (790)
Q Consensus 763 ~~p~~~t~~~l~~l~~~~~~~~~ 785 (790)
+.+..+|..+.......++.++
T Consensus 547 -p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 547 -TNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp -SCCHHHHHHHHHHHHHTTCHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHH
Confidence 3355556666555554444433
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4e-28 Score=257.59 Aligned_cols=195 Identities=14% Similarity=0.195 Sum_probs=102.4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 238 GYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCC 317 (790)
Q Consensus 238 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 317 (790)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+....+ .
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------------------------~ 81 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------------------------S 81 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------------------------S
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------------------------h
Confidence 35555666666666666666666666666666666666666666554431000 0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003872 318 KSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYT 397 (790)
Q Consensus 318 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 397 (790)
+.+.++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+
T Consensus 82 ~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 82 PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence 01113445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 003872 398 LFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHK 458 (790)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 458 (790)
+|++|.+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|..
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555555555555555555555555555443
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4.7e-28 Score=257.06 Aligned_cols=207 Identities=15% Similarity=0.137 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHH
Q 003872 289 DALIVWEELKGSGHEPNE-FTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSR---------KVM 358 (790)
Q Consensus 289 ~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---------~~~ 358 (790)
.+..+.+++.+.+....+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+ .++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344445555555544443 3466677777777777777777777777777777777777777776554 378
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003872 359 EACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEME 438 (790)
Q Consensus 359 ~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 438 (790)
+|.++|++|...|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhcc
Q 003872 439 GRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSR 495 (790)
Q Consensus 439 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 495 (790)
+.|+.||..+|+.||.+|++.|++++|.+++++|.+.+..|+..||+.++..+....
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999887653
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.1e-24 Score=226.36 Aligned_cols=222 Identities=11% Similarity=-0.057 Sum_probs=109.8
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003872 245 AFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDD 324 (790)
Q Consensus 245 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 324 (790)
.+.+.|++++|.+.++.+.+... .+...+..+...+...|++++|...++...+.. +.+...|..+...|.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 34445555555555555554421 123344444455555555555555555554432 3445555555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003872 325 AMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKK 404 (790)
Q Consensus 325 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 404 (790)
|...|+++.+.. +.+..+|..+...+...|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|+++..
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555432 1123345555555555555555555555555432 11233344444555555555555555555554
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 003872 405 KGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHI 472 (790)
Q Consensus 405 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (790)
.... +..+|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...+++.
T Consensus 164 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~a 229 (388)
T 1w3b_A 164 TQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRA 229 (388)
T ss_dssp HCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4221 3444555555555555555555555555443221 3344444444445555555554444443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=7.8e-24 Score=222.00 Aligned_cols=381 Identities=12% Similarity=-0.039 Sum_probs=291.9
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 003872 206 LLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVG 285 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 285 (790)
+...+.+.|++++|.+.+..+.+. .|.+...+..+...+...|++++|..+++...+.. +.+..+|..+...+.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 455678899999999999998863 34456677788888999999999999999988763 447889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 286 KVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFE 365 (790)
Q Consensus 286 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~ 365 (790)
++++|...|+++.+.. +.+...|..+..++.+.|++++|.+.|+++.+... .+...+..+...+...|++++|.+.|+
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999998763 45567899999999999999999999999987642 245567778888899999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccC
Q 003872 366 KMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVD 445 (790)
Q Consensus 366 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 445 (790)
++.+.. +.+..+|..+...+...|++++|...|+++.+.+.. +...+..+...+...|++++|...+++..+.... +
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 998864 345788999999999999999999999999987543 5677888999999999999999999998876332 5
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccc
Q 003872 446 LVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLE 525 (790)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (790)
..++..+..++...|++++|...++++.+.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------------------------------- 266 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL-------------------------------------------------- 266 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------------------------------------
Confidence 778888888888888888888888877652
Q ss_pred cccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcC
Q 003872 526 TDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKG 605 (790)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 605 (790)
.+.++.++..++..+.+.|
T Consensus 267 -------------------------------------------------------------~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 267 -------------------------------------------------------------QPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp -------------------------------------------------------------CSSCHHHHHHHHHHHHHHS
T ss_pred -------------------------------------------------------------CCCCHHHHHHHHHHHHHcC
Confidence 1224455666666777777
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 606 KLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILD 685 (790)
Q Consensus 606 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 685 (790)
++++|...|+.+.+.. +.+..+|..+...+.+.|++++|...++++.+. .+.+..++..+...|.+.|++++|...++
T Consensus 286 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 286 SVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777666554 455666666666666666666666666666654 23345566666666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh
Q 003872 686 KLMKQGGGYLDVVMYNTLINVLGK 709 (790)
Q Consensus 686 ~~~~~~~~~p~~~~~~~li~~~~~ 709 (790)
++.+.. +.+...|..+...+..
T Consensus 364 ~a~~~~--p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 364 EAIRIS--PTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHTTC--TTCHHHHHHHHHHHHH
T ss_pred HHHhhC--CCCHHHHHhHHHHHHH
Confidence 665532 2234444444444443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.3e-21 Score=213.91 Aligned_cols=444 Identities=11% Similarity=0.002 Sum_probs=321.4
Q ss_pred chHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 003872 201 VACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQV 280 (790)
Q Consensus 201 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 280 (790)
..+..+...+.+.|++++|+..|+.+.+. .|+...|..+..++.+.|++++|...++++.+.+. .+..++..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 34556777888999999999999999873 26888999999999999999999999999988743 356788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003872 281 LCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEA 360 (790)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 360 (790)
+...|++++|...|+++.+.+ +++......++..+........+.+.+..+...+..|+...+..-.............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999988775 4455555555555555444444444444333332222222211111111111111111
Q ss_pred HHHHHHHHHCCC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----CCCC--------CCHhhHH
Q 003872 361 CQLFEKMVQDGV---------RTSCWTHNILIDGLFR---NGRAEAAYTLFCDLKK-----KGKF--------VDGITFS 415 (790)
Q Consensus 361 ~~l~~~~~~~~~---------~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~-----~~~~--------~~~~~~~ 415 (790)
..+...+..... +.+...+......+.. .|+++.|..+++++.+ .... .+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111110 1124444444444444 7999999999999887 3111 2345677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhcc
Q 003872 416 IVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSR 495 (790)
Q Consensus 416 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 495 (790)
.+...+...|++++|...++++.+.... ...+..+...+...|++++|...++++.+..
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------- 300 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD------------------- 300 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-------------------
Confidence 8888899999999999999999887544 8888889999999999999999999887621
Q ss_pred ccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhH
Q 003872 496 KSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSL 575 (790)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 575 (790)
T Consensus 301 -------------------------------------------------------------------------------- 300 (514)
T 2gw1_A 301 -------------------------------------------------------------------------------- 300 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003872 576 ARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK 655 (790)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 655 (790)
+.++.++..+...|...|++++|...|+...+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 301 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 301 ------------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp ------------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred ------------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2244567788899999999999999999998875 456788899999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCC
Q 003872 656 FCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGK---AGRFDEANMLFEQMRTSGI 728 (790)
Q Consensus 656 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~ 728 (790)
. +.+..++..+...|...|++++|...++++.+..+..++ ...|..+..++.. .|++++|...++++....
T Consensus 368 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~- 445 (514)
T 2gw1_A 368 F-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD- 445 (514)
T ss_dssp S-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-
T ss_pred c-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-
Confidence 3 346778889999999999999999999999876422333 4488889999999 999999999999998852
Q ss_pred CCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 729 NPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 729 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
+.+..++..+..++.+.|++++|.+.+++..+. .|+.
T Consensus 446 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 335778889999999999999999999999865 4543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.1e-21 Score=209.05 Aligned_cols=234 Identities=12% Similarity=-0.063 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003872 376 CWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIG 455 (790)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 455 (790)
..++..+...+...|++++|...++++...... ...+..+...+...|++++|...++++.+.... +...+..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 313 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHH
Confidence 344555555666666666666666666554322 555555666666666666666666666654322 45566666666
Q ss_pred HHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCC
Q 003872 456 FHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEG 535 (790)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (790)
+...|++++|...++++.+..
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~----------------------------------------------------------- 334 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELD----------------------------------------------------------- 334 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTC-----------------------------------------------------------
T ss_pred HHHhCCHHHHHHHHHHHHHhC-----------------------------------------------------------
Confidence 667777777777766665421
Q ss_pred CCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 003872 536 DAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFE 615 (790)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 615 (790)
+.+...+..+...|...|++++|...++
T Consensus 335 ----------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 335 ----------------------------------------------------PENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp ----------------------------------------------------SSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred ----------------------------------------------------hhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1123345556666666777777777777
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 003872 616 IFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP-TD----IATYNVVIQGLGK---MGRADLASTILDKL 687 (790)
Q Consensus 616 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~---~g~~~~A~~~~~~~ 687 (790)
.+.+.. +.+...+..+...+...|++++|...++++.+.... ++ ...+..+...|.. .|++++|...++++
T Consensus 363 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 363 EAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 766553 345566777777777777777777777777654211 11 3367777777777 78888888888777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 688 MKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 688 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
.+.. +.+..++..+..+|.+.|++++|...|+++.+.
T Consensus 442 ~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 442 SKLD--PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 7763 345667777777777888888888888877764
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=3.8e-19 Score=190.50 Aligned_cols=370 Identities=12% Similarity=0.055 Sum_probs=243.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003872 270 DLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLN 349 (790)
Q Consensus 270 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 349 (790)
+...+..+...+.+.|++++|..+|+++.+.. +.+...+..+..+|...|++++|...|+++.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34455555555666666666666666555432 3345555555555556666666666665555442 123445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 003872 350 GMFKSRKVMEACQLFEKMVQDGVRTS-C---WTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREG 425 (790)
Q Consensus 350 ~~~~~~~~~~a~~l~~~~~~~~~~~~-~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 425 (790)
.|...|++++|...|+.+.+.. |+ . ..+..+...+.. ..+..+...+...|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 5555555555555555555432 22 1 233333222111 11222344577788
Q ss_pred CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCC
Q 003872 426 QIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPM 505 (790)
Q Consensus 426 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 505 (790)
++++|...++++.+... .+...+..+..+|.+.|++++|...++++.+.
T Consensus 158 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------------ 206 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKL------------------------------ 206 (450)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH------------------------------
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------------------
Confidence 88999988888887533 37788888888899999999999888887652
Q ss_pred CCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCC
Q 003872 506 FPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKG 585 (790)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (790)
T Consensus 207 -------------------------------------------------------------------------------- 206 (450)
T 2y4t_A 207 -------------------------------------------------------------------------------- 206 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHH------------HHHHHhcCCHHHHHHHHHHHh
Q 003872 586 MGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSM------------MSSFVKKGYFNQAWGVLNEMG 653 (790)
Q Consensus 586 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~ 653 (790)
.+.++.++..++..|...|++++|...|+.+.+.. +.+...+..+ ...+.+.|++++|...|+++.
T Consensus 207 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l 284 (450)
T 2y4t_A 207 -KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 284 (450)
T ss_dssp -HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12356677888888889999999999998887664 3344455444 788899999999999999998
Q ss_pred hcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003872 654 EKFCPTD-----IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGI 728 (790)
Q Consensus 654 ~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 728 (790)
+.. |+ ...+..+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...|+++.+.
T Consensus 285 ~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-- 358 (450)
T 2y4t_A 285 KTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH-- 358 (450)
T ss_dssp HHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred hcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 853 33 3477888899999999999999999998863 457889999999999999999999999999874
Q ss_pred CCC-hHHHHHHHH------------HHhccC-----CHHHHHHHHHHHHhCCCCCCccch--------hHHHHHHHHHHh
Q 003872 729 NPD-VVTFNTLIE------------VNGKAG-----RLKEAHYFLKMMLDSGCTPNHVTD--------TTLDFLGREIDR 782 (790)
Q Consensus 729 ~p~-~~~~~~l~~------------~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~t~--------~~l~~l~~~~~~ 782 (790)
.|+ ...+..+.. .|...| +.+++.+.++++... ..||.... ..+..+...++.
T Consensus 359 ~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-~~pd~~~~~~~~~~a~~~~~~i~~ay~~ 437 (450)
T 2y4t_A 359 NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-WHPDNFQNEEEKKKAEKKFIDIAAAKEV 437 (450)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH-SCGGGCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH-hCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 554 555555552 233444 567778888874321 35665432 234445555555
Q ss_pred hhhh
Q 003872 783 LKDQ 786 (790)
Q Consensus 783 ~~~~ 786 (790)
..|.
T Consensus 438 L~d~ 441 (450)
T 2y4t_A 438 LSDP 441 (450)
T ss_dssp SSGG
T ss_pred hCCH
Confidence 5443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=3.6e-19 Score=190.69 Aligned_cols=315 Identities=12% Similarity=0.034 Sum_probs=249.7
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVL 161 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (790)
.++..+..+...+.+.|++++|+.+|+.+.... +.+..++..+...|...|++++|++.|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 567888899999999999999999999999875 4478999999999999999999999999999986 34688899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCc---chHHHH------------HHHHHhccchHHHHHHHHHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGC---VACNEL------------LVALRKSDRRSEFKQVFERL 226 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~ 226 (790)
.+|.+.|++++|...|+++++. .+.+. ..+..+ ...+...|++++|...|+.+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS------------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc------------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999874 22233 455544 44488889999999999988
Q ss_pred HhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003872 227 KEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNE 306 (790)
Q Consensus 227 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 306 (790)
.+. .+.+...+..+...|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+.
T Consensus 170 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 245 (450)
T 2y4t_A 170 LEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHK 245 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChH
Confidence 863 34467788888888999999999999999887753 3367888888888999999999999998887653 3344
Q ss_pred HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 307 FTHRII------------IQGCCKSYRMDDAMKIFSEMQYNGLIPD-----TVVYNSLLNGMFKSRKVMEACQLFEKMVQ 369 (790)
Q Consensus 307 ~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~l~~~~~~ 369 (790)
..+..+ ...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++.+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445444 67788888888888888888764 344 34677778888888888888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 003872 370 DGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVV 418 (790)
Q Consensus 370 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 418 (790)
.. +.+..++..+..+|...|++++|...++++.+.... +...+..+.
T Consensus 324 ~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 324 ME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred hC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 53 346778888888888888888888888888875332 344444444
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=2.5e-19 Score=196.81 Aligned_cols=93 Identities=14% Similarity=-0.015 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003872 84 ACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVS 163 (790)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 163 (790)
...|..+...+.+.|++++|...|+.+...+ +.+..++..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4556666666677777777777777766654 2356666667777777777777777777766654 2355666666666
Q ss_pred HHhcCChhHHHHHHH
Q 003872 164 LVRKKQLGLAMSILF 178 (790)
Q Consensus 164 ~~~~~~~~~a~~~~~ 178 (790)
+...|++++|...|+
T Consensus 103 ~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS 117 (537)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 666677776666664
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=4.4e-19 Score=194.86 Aligned_cols=331 Identities=13% Similarity=0.033 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCC
Q 003872 119 SETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLP 198 (790)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (790)
...+..+...+.+.|++++|++.|+++.... +.++.++..+..++...|++++|...++++++. .+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------~p~ 91 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEI------------KPD 91 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------CTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------CCc
Confidence 4566777777788888888888888887765 346777888888888888888888888887775 344
Q ss_pred CcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHC------CCCCCHh
Q 003872 199 GCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK------GLVPDLH 272 (790)
Q Consensus 199 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~ 272 (790)
+...+..+...+...|++++|...|+.+.. .|+. ....+..+...+....|...++.+... ...|+..
T Consensus 92 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 165 (537)
T 3fp2_A 92 HSKALLRRASANESLGNFTDAMFDLSVLSL----NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh
Confidence 566777777788888888888888763322 1221 112233444445556667766666432 1112211
Q ss_pred H------------------------------HHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCCH-------H
Q 003872 273 T------------------------------YNSLIQVLC--------VVGKVKDALIVWEELKGSGHEPNE-------F 307 (790)
Q Consensus 273 ~------------------------------~~~ll~~~~--------~~~~~~~a~~~~~~~~~~g~~~~~-------~ 307 (790)
. ...+...+. ..|++++|..+++++.+.. +.+. .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~ 244 (537)
T 3fp2_A 166 SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAAL 244 (537)
T ss_dssp HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHH
Confidence 1 111111111 1247889999999988763 2232 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003872 308 THRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLF 387 (790)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~ 387 (790)
++..+...+...|++++|...+++..+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 4666667788899999999999999875 4667888888899999999999999999998764 346788999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHH
Q 003872 388 RNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTER 467 (790)
Q Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 467 (790)
..|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999887433 56778889999999999999999999998874 3367788889999999999999999
Q ss_pred HHHHHHh
Q 003872 468 LMKHIRD 474 (790)
Q Consensus 468 ~~~~~~~ 474 (790)
.++++.+
T Consensus 400 ~~~~a~~ 406 (537)
T 3fp2_A 400 QYDIAKR 406 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998876
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=5.6e-15 Score=165.54 Aligned_cols=355 Identities=12% Similarity=0.085 Sum_probs=269.7
Q ss_pred ChHHHHHHhhcCCCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCC--CCCHHHHHHH
Q 003872 48 SEPLVLQVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDV--VVDSETFKLL 125 (790)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~~l 125 (790)
.++++..||.... ..+ -.+.+|.....-.-+.+++--...++.|...|.+.+|+++++...-.+- .-+...-+.+
T Consensus 952 d~~lW~~vl~~~n-~~R--R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlL 1028 (1630)
T 1xi4_A 952 DPELWGSVLLESN-PYR--RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLL 1028 (1630)
T ss_pred CHHHHHHHhcCCc-HHH--HHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHH
Confidence 4556666664322 111 2345554333222345777778899999999999999999999884432 1234566667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHH
Q 003872 126 LEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNE 205 (790)
Q Consensus 126 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (790)
+.+..+. +..+..+...++... + ...+...+...|.+++|..+|++... +..
T Consensus 1029 i~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~--------------------~~~ 1080 (1630)
T 1xi4_A 1029 ILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFDV--------------------NTS 1080 (1630)
T ss_pred HHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCC--------------------HHH
Confidence 7777776 556776666665532 1 33477888899999999999988521 122
Q ss_pred HHHH-HHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 003872 206 LLVA-LRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVV 284 (790)
Q Consensus 206 ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 284 (790)
.+.. +...+++++|.++.++.. +..+|..+..++...|++++|...|.+. -|...|..++.++.+.
T Consensus 1081 A~~VLie~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~l 1147 (1630)
T 1xi4_A 1081 AVQVLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS 1147 (1630)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHc
Confidence 2222 337889999999988663 5778999999999999999999999664 3788889999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003872 285 GKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLF 364 (790)
Q Consensus 285 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~ 364 (790)
|++++|.+.+....+.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|
T Consensus 1148 GkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y 1218 (1630)
T 1xi4_A 1148 GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLY 1218 (1630)
T ss_pred CCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999887763 44334445889999999988644442 2 356677778999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcc
Q 003872 365 EKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVV 444 (790)
Q Consensus 365 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 444 (790)
... ..|..+...|++.|+++.|.+.+++. .+..+|..+-.+|...|++..|...... +..
T Consensus 1219 ~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv 1278 (1630)
T 1xi4_A 1219 NNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVV 1278 (1630)
T ss_pred Hhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhc
Confidence 985 36899999999999999999999877 2678899999999999999999886654 334
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 003872 445 DLVTISSLLIGFHKYGRWDFTERLMKHIRDG 475 (790)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (790)
++..+..++..|.+.|.+++|..+++.....
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 6778889999999999999999999887654
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=1.7e-16 Score=163.94 Aligned_cols=320 Identities=12% Similarity=0.032 Sum_probs=221.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003872 307 FTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGL 386 (790)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~ 386 (790)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 344555555666666666666666655432 1234555555555666666666666666655542 22445555555555
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchH
Q 003872 387 FRNGRAEAAYTLFCDLKKKGKF--VDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDF 464 (790)
Q Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 464 (790)
...|++++|...++++.+.... .+...+..+..... ...+..+...+...|++++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHH
Confidence 5566666666666555544210 01111111111100 1112334678889999999
Q ss_pred HHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCccccccc
Q 003872 465 TERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQL 544 (790)
Q Consensus 465 a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (790)
|...++++.+.
T Consensus 139 A~~~~~~~~~~--------------------------------------------------------------------- 149 (359)
T 3ieg_A 139 AITFLDKILEV--------------------------------------------------------------------- 149 (359)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHh---------------------------------------------------------------------
Confidence 99999988762
Q ss_pred CCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 003872 545 TNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHP 624 (790)
Q Consensus 545 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~ 624 (790)
.+.++.++..+...+...|++++|...++.+.+.. +.
T Consensus 150 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 186 (359)
T 3ieg_A 150 ------------------------------------------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SD 186 (359)
T ss_dssp ------------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SC
T ss_pred ------------------------------------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 12356678889999999999999999999998875 66
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHHhCC
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV------------VIQGLGKMGRADLASTILDKLMKQGG 692 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~------------li~~~~~~g~~~~A~~~~~~~~~~~~ 692 (790)
+...+..+...+...|++++|...++++.+.. +.+...+.. +...+.+.|++++|...++++.+..
T Consensus 187 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 264 (359)
T 3ieg_A 187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE- 264 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 78899999999999999999999999998863 334444432 3666899999999999999999875
Q ss_pred CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 693 GYLDV----VMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 693 ~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
+.+. ..+..+..++...|++++|...+++..+.. +.+..+|..+..++.+.|++++|.+.+++..+. .|+..
T Consensus 265 -~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~ 340 (359)
T 3ieg_A 265 -PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQ 340 (359)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCH
T ss_pred -CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCh
Confidence 2233 235567788999999999999999999852 336889999999999999999999999999954 56654
Q ss_pred c
Q 003872 769 T 769 (790)
Q Consensus 769 t 769 (790)
.
T Consensus 341 ~ 341 (359)
T 3ieg_A 341 Q 341 (359)
T ss_dssp H
T ss_pred H
Confidence 3
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=7.6e-16 Score=159.12 Aligned_cols=327 Identities=11% Similarity=0.004 Sum_probs=190.7
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003872 85 CTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSL 164 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 164 (790)
..+..+...+...|++++|...++.+.... +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 344445555555555555555555555443 2244555555555555555555555555555443 12344455555555
Q ss_pred HhcCChhHHHHHHHHHHHHhccCCCCCcccccCC----CcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHH
Q 003872 165 VRKKQLGLAMSILFKLLEACNDNTADNSVVESLP----GCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYN 240 (790)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (790)
...|++++|...++++++. .| +...+..+...+ ....+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~------------------------~~~~~~ 124 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS-------------NPSEQEEKEAESQLVKAD------------------------EMQRLR 124 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS-------------CCCHHHHHHHHHHHHHHH------------------------HHHHHH
T ss_pred HHcCChHHHHHHHHHHHhc-------------CCcccChHHHHHHHHHHH------------------------HHHHHH
Confidence 5555555555555554431 11 111111111000 000112
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003872 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSY 320 (790)
Q Consensus 241 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 320 (790)
.+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 235666777888888888888776532 356677777777888888888888888877664 556677777777788888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHH
Q 003872 321 RMDDAMKIFSEMQYNGLIPDTVVYN------------SLLNGMFKSRKVMEACQLFEKMVQDGVRTSC----WTHNILID 384 (790)
Q Consensus 321 ~~~~a~~~~~~m~~~~~~p~~~~~~------------~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~----~~~~~li~ 384 (790)
++++|...+++..+... .+...+. .+...+.+.|++++|...++.+.+.... +. ..+..+..
T Consensus 203 ~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 203 DHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICH 280 (359)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHH
Confidence 88888888877775421 1222222 2244567777777887777777764311 22 22444566
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003872 385 GLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGF 456 (790)
Q Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 456 (790)
.+...|++++|...+++..+... .+...+..+...+...|++++|...++++.+.... +...+..+..+.
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 350 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQ 350 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 77777777777777777776532 25666777777777777777777777777765322 444555444443
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=2.8e-15 Score=163.44 Aligned_cols=420 Identities=11% Similarity=0.017 Sum_probs=284.5
Q ss_pred cCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHH
Q 003872 196 SLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYN 275 (790)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 275 (790)
.+.+...|..++. +.+.|++++|..+|+.+.+ ..|.+...|..++..+.+.|++++|..+|+++... .|+...|.
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~ 83 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWK 83 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHH
Confidence 4556778888887 4778999999999999985 35557788999999999999999999999999876 46777776
Q ss_pred HHHHHH-HhcCCHHHHHH----HHHHHHh-CCCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCC
Q 003872 276 SLIQVL-CVVGKVKDALI----VWEELKG-SGHE-PNEFTHRIIIQGCCK---------SYRMDDAMKIFSEMQYNGLIP 339 (790)
Q Consensus 276 ~ll~~~-~~~~~~~~a~~----~~~~~~~-~g~~-~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p 339 (790)
..+... ...|+.+.|.+ +|+.... .|.. .+...|...+....+ .|+++.|..+|++..+. |
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P 160 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---P 160 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---C
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---h
Confidence 666433 34566666554 6666543 2433 346677777766554 67788888888888773 3
Q ss_pred CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HhCC---C
Q 003872 340 DT---VVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDL------KKKG---K 407 (790)
Q Consensus 340 ~~---~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------~~~~---~ 407 (790)
.. ..|..........+. ..+..++. ...+++..|..++..+ .+.. +
T Consensus 161 ~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 161 MINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred hhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 21 233222211100110 00111110 0123345555544442 1111 2
Q ss_pred CCC--------HhhHHHHHHHHHHc----CCH----HHHHHHHHHHHhCCCccCHHHHHHHHHHHHh-------cCCch-
Q 003872 408 FVD--------GITFSIVVLQLCRE----GQI----EEALRLVEEMEGRGFVVDLVTISSLLIGFHK-------YGRWD- 463 (790)
Q Consensus 408 ~~~--------~~~~~~ll~~~~~~----g~~----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~g~~~- 463 (790)
.|+ ...|...+...... ++. +.+..+|++++... +-+...|..++..+.+ .|+++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~ 297 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNN 297 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence 232 23444444333222 222 46777888887752 3367788888777765 68887
Q ss_pred ------HHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCC
Q 003872 464 ------FTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDA 537 (790)
Q Consensus 464 ------~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (790)
+|..++++..+.
T Consensus 298 a~~~~~~A~~~~~~Al~~-------------------------------------------------------------- 315 (530)
T 2ooe_A 298 AKLFSDEAANIYERAIST-------------------------------------------------------------- 315 (530)
T ss_dssp HHHHHHHHHHHHHHHTTT--------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHH--------------------------------------------------------------
Confidence 889999887641
Q ss_pred cccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003872 538 KDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIF 617 (790)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 617 (790)
..+.+..+|..++..+.+.|++++|..+|+.+
T Consensus 316 ------------------------------------------------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a 347 (530)
T 2ooe_A 316 ------------------------------------------------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347 (530)
T ss_dssp ------------------------------------------------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------------------------------------------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 01235667788888888999999999999999
Q ss_pred HhCCCCCC-h-hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCC
Q 003872 618 TDMGVHPV-N-YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG-LGKMGRADLASTILDKLMKQGGGY 694 (790)
Q Consensus 618 ~~~g~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~ 694 (790)
.+. .|+ . ..|..++..+.+.|++++|..+|++..+.. +.+...|...... +...|+.++|..+|+..++.. +
T Consensus 348 l~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p 422 (530)
T 2ooe_A 348 LAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--G 422 (530)
T ss_dssp HHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--T
T ss_pred hCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--C
Confidence 886 443 2 578888888889999999999999998862 2233333332222 346899999999999998874 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCC--hHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 695 LDVVMYNTLINVLGKAGRFDEANMLFEQMRTSG-INPD--VVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 695 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
-+...|..++..+.+.|++++|+.+|++....+ ..|+ ...|..++......|+.+.+..+.+++.+.
T Consensus 423 ~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 423 DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467889999999999999999999999998853 2332 447888888888899999999999988754
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=2.4e-14 Score=154.36 Aligned_cols=354 Identities=12% Similarity=0.054 Sum_probs=256.9
Q ss_pred chhhHHHHHHHHhc----cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCH
Q 003872 235 DIYGYNICIHAFGC----WGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCV----VGKVKDALIVWEELKGSGHEPNE 306 (790)
Q Consensus 235 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~ 306 (790)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45556666666665 677778888877777653 55666667777777 777888888887777654 45
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 003872 307 FTHRIIIQGCCK----SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFK----SRKVMEACQLFEKMVQDGVRTSCWT 378 (790)
Q Consensus 307 ~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~l~~~~~~~~~~~~~~~ 378 (790)
..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|.+.|+...+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 556666666766 677888888888777764 55666666666665 677888888888877764 5667
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCccCHHHHH
Q 003872 379 HNILIDGLFR----NGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCR----EGQIEEALRLVEEMEGRGFVVDLVTIS 450 (790)
Q Consensus 379 ~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~ 450 (790)
+..+...|.. .++.++|..+|++..+.+ +...+..+...|.. .+++++|..+|++..+.| +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7777777777 778888888888877764 45566666677665 678888888888887764 455666
Q ss_pred HHHHHHHh----cCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCcccc
Q 003872 451 SLLIGFHK----YGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLET 526 (790)
Q Consensus 451 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (790)
.+...|.. .+++++|...+++..+.+
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-------------------------------------------------- 289 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG-------------------------------------------------- 289 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--------------------------------------------------
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--------------------------------------------------
Confidence 66666766 778888888887766532
Q ss_pred ccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHc--
Q 003872 527 DANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAK-- 604 (790)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 604 (790)
++..+..+...|...
T Consensus 290 ---------------------------------------------------------------~~~a~~~Lg~~y~~~~~ 306 (490)
T 2xm6_A 290 ---------------------------------------------------------------NSDGQYYLAHLYDKGAE 306 (490)
T ss_dssp ---------------------------------------------------------------CHHHHHHHHHHHHHCBT
T ss_pred ---------------------------------------------------------------CHHHHHHHHHHHHcCCC
Confidence 233444555666665
Q ss_pred ---CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----c
Q 003872 605 ---GKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKG---YFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK----M 674 (790)
Q Consensus 605 ---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 674 (790)
+++++|...|+...+.| +...+..|...|...| ++++|+..|++..+.| +...+..+...|.. .
T Consensus 307 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 380 (490)
T 2xm6_A 307 GVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVK 380 (490)
T ss_dssp TBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 78888888888888765 3456667777777656 7888888888888763 67778888888887 7
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 003872 675 GRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK----AGRFDEANMLFEQMRTSGIN 729 (790)
Q Consensus 675 g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 729 (790)
+++++|...|++..+.+ +...+..|...|.. .+++++|...|++..+.|..
T Consensus 381 ~~~~~A~~~~~~A~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 381 KDEQQAAIWMRKAAEQG----LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 88999999998888765 56777778888877 78899999999988886543
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=3.2e-14 Score=153.45 Aligned_cols=366 Identities=12% Similarity=0.033 Sum_probs=303.5
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003872 255 SLRLFKEMKEKGLVPDLHTYNSLIQVLCV----VGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCK----SYRMDDAM 326 (790)
Q Consensus 255 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~a~ 326 (790)
+...+....+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 355555555543 77778888888887 899999999999998764 56777888888888 89999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 003872 327 KIFSEMQYNGLIPDTVVYNSLLNGMFK----SRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFR----NGRAEAAYTL 398 (790)
Q Consensus 327 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~ 398 (790)
+.|++..+.| +...+..|...|.. .+++++|...|+...+.| +...+..|...|.. .++.++|+++
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999875 66777778888887 789999999999999876 56778888888887 7899999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHh----cCCchHHHHHHH
Q 003872 399 FCDLKKKGKFVDGITFSIVVLQLCR----EGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHK----YGRWDFTERLMK 470 (790)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 470 (790)
|++..+.+ +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|...++
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998875 67788888888888 899999999999998876 56777888888876 789999999998
Q ss_pred HHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCC
Q 003872 471 HIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEW 550 (790)
Q Consensus 471 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (790)
+..+.+
T Consensus 248 ~a~~~~-------------------------------------------------------------------------- 253 (490)
T 2xm6_A 248 QSAEQG-------------------------------------------------------------------------- 253 (490)
T ss_dssp HHHTTT--------------------------------------------------------------------------
T ss_pred HHHHCC--------------------------------------------------------------------------
Confidence 877632
Q ss_pred CCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCh
Q 003872 551 SSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLA----KGKLNLACKLFEIFTDMGVHPVN 626 (790)
Q Consensus 551 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~ 626 (790)
++..+..+...|.. .++.++|...|+...+.| +.
T Consensus 254 ---------------------------------------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~ 291 (490)
T 2xm6_A 254 ---------------------------------------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NS 291 (490)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CH
T ss_pred ---------------------------------------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CH
Confidence 23334455666666 789999999999998765 45
Q ss_pred hhHHHHHHHHHhc-----CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCCCHH
Q 003872 627 YTYNSMMSSFVKK-----GYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMG---RADLASTILDKLMKQGGGYLDVV 698 (790)
Q Consensus 627 ~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~ 698 (790)
..+..|...|... +++++|+..|++..+.| +...+..+...|...| +.++|.++|++..+.+ +..
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~~~ 364 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----EKA 364 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----CHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----CHH
Confidence 6777788888877 89999999999999874 5667778888887766 8899999999999875 678
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCC
Q 003872 699 MYNTLINVLGK----AGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGK----AGRLKEAHYFLKMMLDSGCT 764 (790)
Q Consensus 699 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 764 (790)
.+..+...|.. .+++++|...|++..+.| +...+..|...|.+ .+++++|..++++..+.+..
T Consensus 365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 88889888988 899999999999999865 57788889999988 89999999999999987643
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=5.5e-15 Score=161.14 Aligned_cols=219 Identities=7% Similarity=-0.064 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 003872 359 EACQLFEKMVQDGVRTSCWTHNILIDGLFR-------NGRAE-------AAYTLFCDLKKKGKFVDGITFSIVVLQLCRE 424 (790)
Q Consensus 359 ~a~~l~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 424 (790)
++..+|++..... +-+...|..+...+.+ .|+++ +|..++++..+.-.+-+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5566666666542 2355666666666654 56665 7777777776521222466677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCccCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCC
Q 003872 425 GQIEEALRLVEEMEGRGFVVDL-VTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYT 503 (790)
Q Consensus 425 g~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 503 (790)
|++++|..+|+++.+.... +. ..|..++..+.+.|+++.|..+|++..+.. |+
T Consensus 335 g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~----------------------- 388 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RT----------------------- 388 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TC-----------------------
T ss_pred CCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CC-----------------------
Confidence 7888888888777764221 22 467777777777778888888887776521 10
Q ss_pred CCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhc
Q 003872 504 PMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQG 583 (790)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 583 (790)
T Consensus 389 -------------------------------------------------------------------------------- 388 (530)
T 2ooe_A 389 -------------------------------------------------------------------------------- 388 (530)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcchHHHHHHHHH-HHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CC--
Q 003872 584 KGMGTFDIDMVNTFLS-IFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFC-PT-- 659 (790)
Q Consensus 584 ~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~-- 659 (790)
+...+...+. .+...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++...... .|
T Consensus 389 ------~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 389 ------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp ------CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred ------chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 0111111111 1235778888888888777653 44677788888888888888888888888877532 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 660 DIATYNVVIQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 660 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
....|...+......|+.+.+..+++++.+..
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 24477777777778888888888888887763
No 20
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=2.4e-13 Score=152.54 Aligned_cols=463 Identities=11% Similarity=0.112 Sum_probs=276.6
Q ss_pred HHHHHHHhcCCcch-HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHH
Q 003872 89 HIFRTVCRAGFLEE-VPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGT--SLSPNVYDSVLVSLV 165 (790)
Q Consensus 89 ~l~~~~~~~~~~~~-a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~ 165 (790)
.+|++.-+++-|.. |+-+++ + -|...|..++.- +-+-=.++.++.....+ ..+++-....+++|.
T Consensus 929 eli~vt~~n~l~k~~arylv~----r---~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~ 996 (1630)
T 1xi4_A 929 ELINVCNENSLFKSLSRYLVR----R---KDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFM 996 (1630)
T ss_pred HHHHHHhcchhHHHHHHHHHH----h---cCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHH
Confidence 45666666666653 333332 1 255566655522 11222334444333322 345556677777777
Q ss_pred hcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 003872 166 RKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHA 245 (790)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 245 (790)
..|.+.+|++++++++-.... ...+....+.|+....+. +..+..+....+.. ....-+...
T Consensus 997 ~aglp~EaieLLEKivl~~s~---------fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--------~d~~eIA~I 1058 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLDNSV---------FSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--------YDAPDIANI 1058 (1630)
T ss_pred hCCCHHHHHHHHHHHHcCCCc---------ccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--------ccHHHHHHH
Confidence 778888888877777632110 112344555566655555 44555555544432 113336666
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003872 246 FGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDA 325 (790)
Q Consensus 246 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a 325 (790)
+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++...|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 677788888888887752 12222222222 566777777777755 2356677777788888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003872 326 MKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK 405 (790)
Q Consensus 326 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 405 (790)
.+.|.+. -|...|..++..+.+.|++++|.+.|....+.. +++...+.++.+|++.+++++...+. .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 7777543 366667777777888888888888777666543 33333345777777777777533332 1
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHH
Q 003872 406 GKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWK 485 (790)
Q Consensus 406 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 485 (790)
.++...|..+...|...|++++|..+|..+ ..|..+..++.+.|+++.|.+.+++.. +..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHH
Confidence 235555666777777788888888877764 367777778888888888877777662 234454
Q ss_pred HHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhc
Q 003872 486 ADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKS 565 (790)
Q Consensus 486 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 565 (790)
.+-.+++..+. +..|
T Consensus 1255 ev~~acve~~E---------------f~LA-------------------------------------------------- 1269 (1630)
T 1xi4_A 1255 EVCFACVDGKE---------------FRLA-------------------------------------------------- 1269 (1630)
T ss_pred HHHHHHhhhhH---------------HHHH--------------------------------------------------
Confidence 44333332211 1111
Q ss_pred cCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--CCHH
Q 003872 566 DCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKK--GYFN 643 (790)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~ 643 (790)
+....+ ...+++.+..++..|.+.|.+++|+.+++...... +-....|+-|...|++. ++..
T Consensus 1270 -----------~~cgl~----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1270 -----------QMCGLH----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred -----------HHHHHh----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHH
Confidence 100000 01256667788999999999999999998877655 44556676676676664 4566
Q ss_pred HHHHHHHHHhhcCCCC------CHHHHHHHHHHHHhcCCHHHHHHH-------------HHHHHHhCCCCCCHHHHHHHH
Q 003872 644 QAWGVLNEMGEKFCPT------DIATYNVVIQGLGKMGRADLASTI-------------LDKLMKQGGGYLDVVMYNTLI 704 (790)
Q Consensus 644 ~A~~~~~~m~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~-------------~~~~~~~~~~~p~~~~~~~li 704 (790)
++.++|..-.. +++ +...|.-++..|.+.|+++.|... |...+. -..|...|-..+
T Consensus 1334 Ehlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~---kv~n~elyykai 1408 (1630)
T 1xi4_A 1334 EHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT---KVANVELYYRAI 1408 (1630)
T ss_pred HHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc---ccccHHHHHHHH
Confidence 66666664333 222 456788888999999999988732 222221 234666777777
Q ss_pred HHHHhcC
Q 003872 705 NVLGKAG 711 (790)
Q Consensus 705 ~~~~~~g 711 (790)
..|...+
T Consensus 1409 ~Fyl~~~ 1415 (1630)
T 1xi4_A 1409 QFYLEFK 1415 (1630)
T ss_pred HHHHhhC
Confidence 7776443
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.1e-15 Score=155.99 Aligned_cols=268 Identities=10% Similarity=-0.047 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccC
Q 003872 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESL 197 (790)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 197 (790)
+...+..+...+...|++++|+++|+++.+... .+...+..++..+...|++++|...++++++. .+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------~~ 87 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDL------------YP 87 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH------------CT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh------------Cc
Confidence 334455555555555666666666666655432 23344445555555556666666666555553 23
Q ss_pred CCcchHHHHHHHHHhcc-chHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 198 PGCVACNELLVALRKSD-RRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 198 ~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
.+...+..+...+...| ++++|.+.|+...+. .+.+...|..+...+...|++++|...|+++.+.... +...+..
T Consensus 88 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 164 (330)
T 3hym_B 88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLY 164 (330)
T ss_dssp TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHH
Confidence 33444555555555555 555555555555431 1223444555555555555555555555555544221 2334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHH
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNG--------LIPDTVVYNSLL 348 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~p~~~~~~~li 348 (790)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. .+....++..+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 5555555555555555555555442 3334455555555555555555555555544310 011223344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003872 349 NGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLK 403 (790)
Q Consensus 349 ~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 403 (790)
..+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44444444444444444444322 1123333444444444444444444444433
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.4e-15 Score=155.05 Aligned_cols=293 Identities=11% Similarity=-0.030 Sum_probs=233.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcC
Q 003872 151 SLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQK 230 (790)
Q Consensus 151 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 230 (790)
+.++..+..+...+...|++++|..+|+++++. .+.+...+..++..+...|++++|..+++.+.+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 85 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK------------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDL- 85 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH------------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh-
Confidence 456667888888899999999999999999876 4555667777888889999999999999998863
Q ss_pred CCCCchhhHHHHHHHHhccC-ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 003872 231 EFEFDIYGYNICIHAFGCWG-DLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTH 309 (790)
Q Consensus 231 ~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 309 (790)
.+.+...|..+...+...| ++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+
T Consensus 86 -~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 162 (330)
T 3hym_B 86 -YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPM 162 (330)
T ss_dssp -CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHH
T ss_pred -CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHH
Confidence 3345678888888899999 899999999998876432 56778888899999999999999999988764 3445667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHH
Q 003872 310 RIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDG--------VRTSCWTHNI 381 (790)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~--------~~~~~~~~~~ 381 (790)
..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.. .+....++..
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence 778888999999999999999988764 3367788888889999999999999998887631 1334568888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHH-HhcC
Q 003872 382 LIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGF-HKYG 460 (790)
Q Consensus 382 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g 460 (790)
+...+...|++++|...+++..+.... +...+..+...+...|++++|...++++.+.. +.+...+..+..++ ...|
T Consensus 242 la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g 319 (330)
T 3hym_B 242 LGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIG 319 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhC
Confidence 888999999999999999988876433 66778888888999999999999999887753 23677777777777 4455
Q ss_pred Cc
Q 003872 461 RW 462 (790)
Q Consensus 461 ~~ 462 (790)
+.
T Consensus 320 ~~ 321 (330)
T 3hym_B 320 DS 321 (330)
T ss_dssp C-
T ss_pred ch
Confidence 54
No 23
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=181.30 Aligned_cols=136 Identities=14% Similarity=0.154 Sum_probs=95.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHh---hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMG---EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYN 701 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 701 (790)
-..+|++||++|++.|++++|..+|.+|. ..|+.||.+|||+||++|++.|++++|.++|++|.+.| +.||.+|||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHHHHH
Confidence 34577777777777777777777776654 34677777777777777777777777777777777766 777777777
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 003872 702 TLINVLGKAGR-FDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPN 766 (790)
Q Consensus 702 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 766 (790)
+||.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++.++++ ..++.|+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 77777777776 366777777777777777777777777655553 334444444 3445554
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=5.7e-15 Score=153.18 Aligned_cols=256 Identities=14% Similarity=0.014 Sum_probs=163.2
Q ss_pred Cchhhhh-hhhhhhcCCCCCCc-chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003872 62 DSSKKLD-FFRWCSSLRPIYKH-TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAI 139 (790)
Q Consensus 62 ~~~~al~-~f~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 139 (790)
+...|+. .|..+....+..+. +...+..+...+.+.|++++|...++.+.+.. +.+..++..+...+...|++++|+
T Consensus 40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHH
Confidence 4566777 77766555554322 45778889999999999999999999999886 447889999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHH--------------
Q 003872 140 EILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNE-------------- 205 (790)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 205 (790)
+.|+++.+.. +.+..++..+...+...|++++|...+++++..... +...+..
T Consensus 119 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 119 SALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA------------YAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT------------TGGGCC---------------
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------------cHHHHHHHHHHhhhhcccHHH
Confidence 9999999886 347889999999999999999999999999885321 1111111
Q ss_pred -HHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 003872 206 -LLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVV 284 (790)
Q Consensus 206 -ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 284 (790)
.+..+...|++++|...|+.+.+...-.++..++..+...+...|++++|...|+++.+.. +.+..++..+...+...
T Consensus 186 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 186 RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANG 264 (368)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHc
Confidence 1222225555666666665555422221234555555555555555555555555555442 11344555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 285 GKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQ 333 (790)
Q Consensus 285 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 333 (790)
|++++|...++++.+.. +.+...+..+..+|.+.|++++|...|++..
T Consensus 265 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555554432 2334445555555555555555555555544
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=1.7e-15 Score=157.25 Aligned_cols=268 Identities=10% Similarity=-0.089 Sum_probs=202.5
Q ss_pred cchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 003872 200 CVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQ 279 (790)
Q Consensus 200 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 279 (790)
...+..+...+...|++++|...|+.+.+. .+.+...+..+...+...|++++|...|+++.+... .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~ 140 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAV 140 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 455666777777777777777777777752 234566777777777777888888888877776642 25677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHH
Q 003872 280 VLCVVGKVKDALIVWEELKGSGHEPNEFTHRI---------------IIQGCCKSYRMDDAMKIFSEMQYNGLI-PDTVV 343 (790)
Q Consensus 280 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~ 343 (790)
.+...|++++|...++++.+.. +.+...+.. .+..+...|++++|...++++.+.... ++..+
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 7778888888888887777653 222222211 233344889999999999998875322 14778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 003872 344 YNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCR 423 (790)
Q Consensus 344 ~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 423 (790)
+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+... .+...+..+...+..
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 8889999999999999999999988764 34578889999999999999999999999887643 367788899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCcc----------CHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 003872 424 EGQIEEALRLVEEMEGRGFVV----------DLVTISSLLIGFHKYGRWDFTERLMKHIR 473 (790)
Q Consensus 424 ~g~~~~a~~~~~~m~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (790)
.|++++|...++++.+..... ...+|..+..++...|++++|..++.+..
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 999999999999987642221 26889999999999999999999887543
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=1.7e-15 Score=156.89 Aligned_cols=275 Identities=10% Similarity=-0.054 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003872 376 CWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIG 455 (790)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 455 (790)
...+..+...+.+.|++++|+.+|+++.+.... +..++..+...+...|++++|...|+++.+... .+...+..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 344666667777777777777777777665432 566677777777777777777777777776532 256777778888
Q ss_pred HHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCC
Q 003872 456 FHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEG 535 (790)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (790)
|...|++++|...++++.+.. |+.......
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~------------------------------------------------ 172 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKN------------------------------------------------ 172 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------------------------------------------
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhh------------------------------------------------
Confidence 888888888888887776521 111000000
Q ss_pred CCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 003872 536 DAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFE 615 (790)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 615 (790)
.......+..+...+...|++++|...|+
T Consensus 173 ---------------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 173 ---------------------------------------------------KKGSPGLTRRMSKSPVDSSVLEGVKELYL 201 (365)
T ss_dssp -------------------------------------------------------------------CCHHHHHHHHHHH
T ss_pred ---------------------------------------------------hccchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 00012334566788889999999999999
Q ss_pred HHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 003872 616 IFTDMGVHP--VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGG 693 (790)
Q Consensus 616 ~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 693 (790)
.+.+.. +. +..++..+...|...|++++|+..++++.+.. +.+..+|+.+..+|...|++++|...|+++++..
T Consensus 202 ~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 277 (365)
T 4eqf_A 202 EAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-- 277 (365)
T ss_dssp HHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 998875 33 68899999999999999999999999999873 4578899999999999999999999999999874
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C-C--------CChHHHHHHHHHHhccCCHHHHHHHHHH
Q 003872 694 YLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSG--I-N--------PDVVTFNTLIEVNGKAGRLKEAHYFLKM 757 (790)
Q Consensus 694 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~-~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 757 (790)
+.+..+|..+..+|...|++++|...|+++.+.. . . .+..+|..+..++...|+.+.+..+.++
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 4568899999999999999999999999998631 1 1 1367899999999999999988877665
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=4.8e-15 Score=149.13 Aligned_cols=239 Identities=13% Similarity=0.070 Sum_probs=76.3
Q ss_pred hcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003872 96 RAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMS 175 (790)
Q Consensus 96 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 175 (790)
+.|++++|.+.++.+. ++.+|..++.++.+.|++++|++.|.+. +|+..|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3455666666666551 2236666666666666666666666431 355566666666666666666666
Q ss_pred HHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHH
Q 003872 176 ILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTS 255 (790)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 255 (790)
.++...+ ..+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|
T Consensus 83 yl~~ark-------------~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA 141 (449)
T 1b89_A 83 YLQMARK-------------KARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAA 141 (449)
T ss_dssp ---------------------------------------CHHHHTTTTT--------CC----------------CTTTH
T ss_pred HHHHHHH-------------hCccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHH
Confidence 5554443 22334555566666666666666655542 24555666677777777777777
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 256 LRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 256 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
..+|..+ ..|..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+
T Consensus 142 ~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L--- 203 (449)
T 1b89_A 142 KLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--- 203 (449)
T ss_dssp HHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT---
T ss_pred HHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH---
Confidence 7777655 25666667777777777777766666 25666677777777777776664433321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003872 336 GLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFR 388 (790)
Q Consensus 336 ~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~ 388 (790)
...+.-...++..|.+.|.+++|..+++...... +-....|+-|.-.|++
T Consensus 204 --~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 204 --VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred --HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 1222333456666666677777766666666543 3445555555555544
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=6.2e-15 Score=152.67 Aligned_cols=247 Identities=12% Similarity=-0.030 Sum_probs=160.6
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVL 161 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (790)
.+...+..+...+.+.|++++|..+|+.+.... +.+..++..+...|...|++++|++.|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668889999999999999999999999876 3478999999999999999999999999999875 34688999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNI 241 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (790)
.+|...|++++|...++++++......... .........+..+...+...|++++|...++.+.+...-.++..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLV--KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHH--hhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 999999999999999999988532110000 000001122233455666666666666666666653222224555666
Q ss_pred HHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003872 242 CIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYR 321 (790)
Q Consensus 242 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 321 (790)
+...|...|++++|...|+++.+... .+..++..+..+|...|++++|...|++..+.. +.+..++..+..+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 66666666666666666666655422 245556666666666666666666666655442 3335555555555666666
Q ss_pred HHHHHHHHHHHHH
Q 003872 322 MDDAMKIFSEMQY 334 (790)
Q Consensus 322 ~~~a~~~~~~m~~ 334 (790)
+++|...|+++.+
T Consensus 297 ~~~A~~~~~~al~ 309 (365)
T 4eqf_A 297 YREAVSNFLTALS 309 (365)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=4.9e-17 Score=176.36 Aligned_cols=164 Identities=20% Similarity=0.264 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHH---hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFT---DMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV 666 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 666 (790)
...+|+++|++||+.|++++|..+|+.|. ..|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45689999999999999999999998875 458999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------hHHHHHHH
Q 003872 667 VIQGLGKMGR-ADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD------VVTFNTLI 739 (790)
Q Consensus 667 li~~~~~~g~-~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~l~ 739 (790)
+|+++++.|+ .++|.++|++|.+.| +.||..+|++++.++.+.+ +++..+++ ..++.|+ ..+-..|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG-~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEG-LKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHT-CCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcC-CCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 9999999998 478999999999998 9999999999987766643 44444444 3456655 45556677
Q ss_pred HHHhccCC---------HHHHHHHHHHHH
Q 003872 740 EVNGKAGR---------LKEAHYFLKMML 759 (790)
Q Consensus 740 ~~~~~~g~---------~~~A~~~~~~m~ 759 (790)
+.|.+.+. .++-...+++-.
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 88887662 455556665543
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=2.1e-15 Score=151.71 Aligned_cols=222 Identities=12% Similarity=0.096 Sum_probs=93.9
Q ss_pred HhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 003872 211 RKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDA 290 (790)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 290 (790)
.+.|+.++|.++++++.. ..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|
T Consensus 14 ~~~~~ld~A~~fae~~~~-------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE-------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHH
Confidence 356778999999988843 358999999999999999999999653 5777999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 291 LIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQD 370 (790)
Q Consensus 291 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~ 370 (790)
...++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 9988877764 5567888999999999999999988885 367789999999999999999999999976
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHH
Q 003872 371 GVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTIS 450 (790)
Q Consensus 371 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 450 (790)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|...... +...+....
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHH
Confidence 36899999999999999999999988 2789999999999999999999554443 334555566
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHh
Q 003872 451 SLLIGFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 451 ~l~~~~~~~g~~~~a~~~~~~~~~ 474 (790)
.++..|.+.|++++|..+++....
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhC
Confidence 789999999999999999988765
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=2.7e-14 Score=141.37 Aligned_cols=163 Identities=13% Similarity=0.126 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHH---HHHHH
Q 003872 593 MVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATY---NVVIQ 669 (790)
Q Consensus 593 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~---~~li~ 669 (790)
.+..+...+...|++++|++.++. +.+...+..++..|.+.|++++|...++++.+.. |+.... ..++.
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~ 174 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVS 174 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHH
Confidence 344444555555555555555544 3444555555555666666666666666655542 222111 11223
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHH
Q 003872 670 GLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLK 749 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 749 (790)
.+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|...|+++.+.. +-+..++..++..+...|+.+
T Consensus 175 l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 175 LAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPP 251 (291)
T ss_dssp HHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCH
T ss_pred HHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCH
Confidence 333345566666666666555 23455556666666666666666666666655531 123455555665666666654
Q ss_pred H-HHHHHHHHHhCCCCCCcc
Q 003872 750 E-AHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 750 ~-A~~~~~~m~~~~~~p~~~ 768 (790)
+ +.++++++.+. .|+..
T Consensus 252 eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 252 EVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp HHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHh--CCCCh
Confidence 4 34555555533 44443
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=1.7e-14 Score=146.71 Aligned_cols=277 Identities=10% Similarity=0.004 Sum_probs=196.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 003872 379 HNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHK 458 (790)
Q Consensus 379 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 458 (790)
+..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 445555666666666666666666654322 45556666666667777777777777666553 2256666677777777
Q ss_pred cCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCc
Q 003872 459 YGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAK 538 (790)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (790)
.|++++|...++++.+....... .+..+...
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~------------------------------------------------ 132 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQ-LGSVNLQA------------------------------------------------ 132 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTT-C-------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHhCCccHH-HHHHHhHH------------------------------------------------
Confidence 77777777777776653211000 00000000
Q ss_pred ccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHH--HHHHcCChHHHHHHHHH
Q 003872 539 DEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLS--IFLAKGKLNLACKLFEI 616 (790)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~ 616 (790)
.++......+.. .+...|++++|...++.
T Consensus 133 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 133 -------------------------------------------------DVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp --------------------------------------------------------------CCTTSHHHHHHHHHHHHH
T ss_pred -------------------------------------------------HHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 000000111212 25567889999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 003872 617 FTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD 696 (790)
Q Consensus 617 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 696 (790)
+.+.. +.+...+..+...|...|++++|...++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+
T Consensus 164 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~ 239 (327)
T 3cv0_A 164 ALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGY 239 (327)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC
Confidence 98775 5578899999999999999999999999998873 4568889999999999999999999999999874 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------ChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 697 VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-----------DVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 697 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
...|..+..+|...|++++|.+.++++....... +..+|..+..++.+.|++++|..++++..
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8889999999999999999999999998742221 47789999999999999999999887543
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=5e-14 Score=143.28 Aligned_cols=279 Identities=12% Similarity=-0.012 Sum_probs=168.4
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLV 162 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (790)
+...+......+...|++++|..+++.+..... .+..++..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 556677888899999999999999999988753 478899999999999999999999999999875 347888999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHH
Q 003872 163 SLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNIC 242 (790)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 242 (790)
.+...|++++|...++++++... .+...+..+... .|+......+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~------------~~~~~~~~~~~~-----------------------~~~~~~~~~~ 142 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQP------------QYEQLGSVNLQA-----------------------DVDIDDLNVQ 142 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTST------------TTTTC----------------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC------------ccHHHHHHHhHH-----------------------HHHHHHHHHH
Confidence 99999999999999999987532 222222222000 0000111111
Q ss_pred HH--HHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003872 243 IH--AFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSY 320 (790)
Q Consensus 243 i~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 320 (790)
.. .+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 143 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 143 SEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGN 220 (327)
T ss_dssp ---CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcC
Confidence 11 134445555555555555443211 34445555555555555555555555554432 333445555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHc
Q 003872 321 RMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRT-----------SCWTHNILIDGLFRN 389 (790)
Q Consensus 321 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~-----------~~~~~~~li~~~~~~ 389 (790)
++++|...++++.+.. +.+...+..+...+...|++++|...++.+....... +...+..+..++.+.
T Consensus 221 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 221 RPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 5555555555554432 1234455555555555566666665555555432110 244555566666666
Q ss_pred CCHHHHHHHHHH
Q 003872 390 GRAEAAYTLFCD 401 (790)
Q Consensus 390 ~~~~~a~~~~~~ 401 (790)
|+++.|..++++
T Consensus 300 g~~~~A~~~~~~ 311 (327)
T 3cv0_A 300 NRPDLVELTYAQ 311 (327)
T ss_dssp TCHHHHHHHTTC
T ss_pred CCHHHHHHHHHH
Confidence 666666665543
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=4.4e-13 Score=144.18 Aligned_cols=393 Identities=11% Similarity=-0.014 Sum_probs=242.4
Q ss_pred CCCchhhHHHHHHHHhccCChHHHHHHHHHHHHC-----C---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 003872 232 FEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK-----G---LVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGS--- 300 (790)
Q Consensus 232 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 300 (790)
.+.....||.+...+...|+.++|++.|++..+. + -.....+|+.+..+|...|++++|...+++..+.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3444678999999999999999999999887542 1 1224578889999999999999999998877532
Q ss_pred --C--CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHC
Q 003872 301 --G--HEPNEFTHRIIIQGCCK--SYRMDDAMKIFSEMQYNGLIPD-TVVYNSLLNG---MFKSRKVMEACQLFEKMVQD 370 (790)
Q Consensus 301 --g--~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~---~~~~~~~~~a~~l~~~~~~~ 370 (790)
+ ......++..+..++.. .+++++|+..|++..+.. |+ ...+..+... +...++.++|++.+++..+.
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 01234556555555544 356899999999988753 43 4444444433 34557778888888888775
Q ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCH
Q 003872 371 GVRTSCWTHNILIDGLFR----NGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDL 446 (790)
Q Consensus 371 ~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 446 (790)
+ +.+..++..+...+.. .+++++|.+++++....... +...+..+...|...|++++|...++++.+.... +.
T Consensus 205 ~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 281 (472)
T 4g1t_A 205 N-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NA 281 (472)
T ss_dssp C-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CH
T ss_pred C-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hH
Confidence 4 3355566555555544 45678899999888776433 6677888888999999999999999998876433 56
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCcccc
Q 003872 447 VTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLET 526 (790)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (790)
..+..+..+|...+....+...
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~---------------------------------------------------------- 303 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRE---------------------------------------------------------- 303 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhHHH----------------------------------------------------------
Confidence 6666666555322110000000
Q ss_pred ccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCC
Q 003872 527 DANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGK 606 (790)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 606 (790)
..........+.
T Consensus 304 --------------------------------------------------------------------~~~~~~~~~~~~ 315 (472)
T 4g1t_A 304 --------------------------------------------------------------------NGMYGKRKLLEL 315 (472)
T ss_dssp ------------------------------------------------------------------------CHHHHHHH
T ss_pred --------------------------------------------------------------------HHHHHHHHHHhh
Confidence 000000011123
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHH
Q 003872 607 LNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIA--TYNVVIQ-GLGKMGRADLASTI 683 (790)
Q Consensus 607 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~ 683 (790)
.++|...|+...+.. +.+...+..+...|...|++++|+..|++..+....+... .+..+.. .+...|+.++|+..
T Consensus 316 ~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 316 IGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 567778888777665 5566788888899999999999999999988764332221 2222322 23567899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-
Q 003872 684 LDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSG- 762 (790)
Q Consensus 684 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~- 762 (790)
|++.++. .|+...... ....+.+++++..... +.+..+|..|..+|...|++++|++.+++.++.|
T Consensus 395 y~kal~i---~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 395 FIEGVKI---NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHS---CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHhc---CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9998874 455433222 2344566666666542 3457889999999999999999999999988643
Q ss_pred CCCCccc
Q 003872 763 CTPNHVT 769 (790)
Q Consensus 763 ~~p~~~t 769 (790)
..|+..+
T Consensus 462 ~~p~a~~ 468 (472)
T 4g1t_A 462 LIPSASS 468 (472)
T ss_dssp -------
T ss_pred CCCcHhh
Confidence 3455444
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.61 E-value=7.8e-14 Score=138.02 Aligned_cols=192 Identities=13% Similarity=0.104 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCC-chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 003872 202 ACNELLVALRKSDRRSEFKQVFERLKEQKEFEF-DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQV 280 (790)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 280 (790)
++..+...+...++.++|++.++.+.. .+..| +...+..+...+...|++++|++.+++ +.+...+..+...
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~-~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~ 139 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMS-RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHH-SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHh-cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHH
Confidence 333333344444444444444444433 22212 233333344444444444444444443 2234444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003872 281 LCVVGKVKDALIVWEELKGSGHEPNEFTH---RIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKV 357 (790)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 357 (790)
+.+.|++++|.+.++++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCH
Confidence 444444444444444444331 221100 111122222344444444444444331 22344444444444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHh
Q 003872 358 MEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEA-AYTLFCDLKK 404 (790)
Q Consensus 358 ~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~ 404 (790)
++|...|++..+.. +-+..++..++..+...|+.++ +.++++++.+
T Consensus 217 ~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 217 EAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444444444432 2233444444444444444432 3344444443
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=1.5e-12 Score=139.86 Aligned_cols=332 Identities=11% Similarity=-0.087 Sum_probs=211.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccC
Q 003872 116 VVDSETFKLLLEPCIKSGKIDFAIEILDYMEEL--------GTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDN 187 (790)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (790)
......|+.+...+...|++++|++.|++..+. .-+....+|..+..+|...|++++|...++++++.....
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334578899999999999999999999887653 112345678999999999999999999999887754322
Q ss_pred CCCCcccccCCCcchHHHHHHHHHh--ccchHHHHHHHHHHHhcCCCCCc-hhhHHHHHHH---HhccCChHHHHHHHHH
Q 003872 188 TADNSVVESLPGCVACNELLVALRK--SDRRSEFKQVFERLKEQKEFEFD-IYGYNICIHA---FGCWGDLHTSLRLFKE 261 (790)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~---~~~~g~~~~a~~~~~~ 261 (790)
.... ......++..+..++.. .+++++|++.|++..+. .|+ ...+..+... +...++.++|++.+++
T Consensus 128 ~~~~----~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 128 SSPY----RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp CCSS----CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred cccc----chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 1100 11123445555555544 45789999999998873 233 4444444433 3456778889998888
Q ss_pred HHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003872 262 MKEKGLVPDLHTYNSLIQVLCV----VGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGL 337 (790)
Q Consensus 262 m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 337 (790)
..+.... +..++..+...+.. .++.++|.+.+++..... +.+...+..+...|...|++++|...+++..+..
T Consensus 201 al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 277 (472)
T 4g1t_A 201 AIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI- 277 (472)
T ss_dssp HHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-
Confidence 8776322 55566555555544 456788999998887664 5667788888899999999999999999988753
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 003872 338 IPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIV 417 (790)
Q Consensus 338 ~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 417 (790)
+-+..++..+...|...+.. ..... ...........+..+.|...++........ +...+..+
T Consensus 278 p~~~~~~~~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 340 (472)
T 4g1t_A 278 PNNAYLHCQIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSIL 340 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHH
T ss_pred CChHHHHHHHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhH
Confidence 22445555555444321110 00000 000001111123356777778777765432 45667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCccCHH--HHHHHHH-HHHhcCCchHHHHHHHHHHh
Q 003872 418 VLQLCREGQIEEALRLVEEMEGRGFVVDLV--TISSLLI-GFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 418 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~ 474 (790)
...+...|++++|...|++..+....+... .+..+.. .....|++++|...+.+..+
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888888888888888888888764443221 2222222 23467888888888887766
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=4.9e-12 Score=123.37 Aligned_cols=118 Identities=15% Similarity=0.023 Sum_probs=70.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003872 604 KGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTI 683 (790)
Q Consensus 604 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 683 (790)
.|++++|...++.+.... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...
T Consensus 118 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344555555555554442 2334455555666666666666666666665542 23455666666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 684 LDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 684 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
++++++.. +.+...|..+..++...|++++|...|++..+
T Consensus 196 ~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 196 CNKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666653 33456666666666666777777776666654
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.50 E-value=2.5e-12 Score=121.35 Aligned_cols=65 Identities=18% Similarity=0.000 Sum_probs=43.8
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 003872 409 VDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 409 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (790)
++...+..+...+.+.|++++|...|++..+.... +...+..+..++.+.|++++|...+++..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 67 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVA 67 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666666777777777777777777665332 566677777777777777777777776665
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=6.1e-12 Score=122.72 Aligned_cols=224 Identities=12% Similarity=0.003 Sum_probs=120.9
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--C----HHHH
Q 003872 84 ACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSL--S----PNVY 157 (790)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 157 (790)
...|..+...+...|++++|...++.+.... .+..++..+...+...|++++|++.|++..+..... + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3455556666666666666666666666655 456666666666666666666666666665542111 1 3556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchh
Q 003872 158 DSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIY 237 (790)
Q Consensus 158 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (790)
..+...+...|++++|...++++++.. |+ ...+...|++++|...++.+... .+.+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 140 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH-------------RT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAE 140 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-------------CC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-------------ch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHH
Confidence 666666666666666666666665531 11 12344455555555555555541 122334
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 238 GYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCC 317 (790)
Q Consensus 238 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 317 (790)
.+..+...+...|++++|...|++..+... .+..++..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 218 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 218 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHH
Confidence 455555555555555555555555554421 134445555555555555555555555554432 233444555555555
Q ss_pred hcCCHHHHHHHHHHHH
Q 003872 318 KSYRMDDAMKIFSEMQ 333 (790)
Q Consensus 318 ~~~~~~~a~~~~~~m~ 333 (790)
..|++++|...+++..
T Consensus 219 ~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 219 AVKEYASALETLDAAR 234 (258)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 5555555555555444
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=4.3e-12 Score=134.31 Aligned_cols=144 Identities=10% Similarity=0.002 Sum_probs=88.8
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----
Q 003872 603 AKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKG-----YFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK---- 673 (790)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---- 673 (790)
..+++++|...|++..+.| +...+..|...|. .| ++++|+..|++.. . -+......|...|..
T Consensus 263 ~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~ 334 (452)
T 3e4b_A 263 ELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLG 334 (452)
T ss_dssp GGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTS
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCC
Confidence 3567777777777777665 4556666666665 44 7888888888776 3 356666666666655
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHH
Q 003872 674 MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK----AGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLK 749 (790)
Q Consensus 674 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 749 (790)
..++++|...|++..+.+ +......|...|.. ..++++|..+|+...+.|.. +.......+......++.+
T Consensus 335 ~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~ 409 (452)
T 3e4b_A 335 KVYPQKALDHLLTAARNG----QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRA 409 (452)
T ss_dssp SCCHHHHHHHHHHHHTTT----CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHH
T ss_pred CcCHHHHHHHHHHHHhhC----hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHH
Confidence 347888888888877765 23334445555543 35788888888888776632 2222222222223334566
Q ss_pred HHHHHHHHHH
Q 003872 750 EAHYFLKMML 759 (790)
Q Consensus 750 ~A~~~~~~m~ 759 (790)
+|.++.++..
T Consensus 410 ~a~~~~~~~~ 419 (452)
T 3e4b_A 410 EGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6777776654
No 41
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=1.2e-09 Score=119.33 Aligned_cols=441 Identities=10% Similarity=0.010 Sum_probs=263.0
Q ss_pred hHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccC
Q 003872 171 GLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWG 250 (790)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 250 (790)
.+....|++.+.. .+.|...|..++..+.+.+.++.+..+|+.+... +|.....|...+..-.+.|
T Consensus 49 ~d~i~~lE~~l~~------------np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~ 114 (679)
T 4e6h_A 49 SDVIGKLNDMIEE------------QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKM 114 (679)
T ss_dssp SCHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHH------------CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhC
Confidence 3444455665554 5678899999999999999999999999999964 5667788888888888888
Q ss_pred C---hHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHHH
Q 003872 251 D---LHTSLRLFKEMKEKG-LVPDLHTYNSLIQVLCVVGKV--------KDALIVWEELKG-SGH-EP-NEFTHRIIIQG 315 (790)
Q Consensus 251 ~---~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~-~~~~~~~li~~ 315 (790)
+ ++.+..+|++..... ..|++..|...+....+.++. +.+.++|+.... .|. .+ +...|...+..
T Consensus 115 ~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f 194 (679)
T 4e6h_A 115 EELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHF 194 (679)
T ss_dssp -CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 8 999999999998763 137888888877766665543 344577776543 355 44 45677777765
Q ss_pred HHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003872 316 CCK---------SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWTHNILIDGL 386 (790)
Q Consensus 316 ~~~---------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~ 386 (790)
... .++++.+..+|++........-..+|......--..+. ..+.+++.+.
T Consensus 195 ~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~------------------- 254 (679)
T 4e6h_A 195 LEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL------------------- 254 (679)
T ss_dssp HHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-------------------
T ss_pred HHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-------------------
Confidence 432 33467788888887752111112233222111100010 0111111110
Q ss_pred HHcCCHHHHHHHHHHHHhC--CC----C-----------C-----C---HhhHHHHHHHHHHcC-------CHHHHHHHH
Q 003872 387 FRNGRAEAAYTLFCDLKKK--GK----F-----------V-----D---GITFSIVVLQLCREG-------QIEEALRLV 434 (790)
Q Consensus 387 ~~~~~~~~a~~~~~~~~~~--~~----~-----------~-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~ 434 (790)
..+++.|...+.++... ++ + | + ...|...+..-...+ ..+.+..+|
T Consensus 255 --~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Y 332 (679)
T 4e6h_A 255 --SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVY 332 (679)
T ss_dssp --HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHH
Confidence 01122222222221110 00 0 0 0 112333333222211 123455667
Q ss_pred HHHHhCCCccCHHHHHHHHHHHHhcCCchHHH-HHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChH
Q 003872 435 EEMEGRGFVVDLVTISSLLIGFHKYGRWDFTE-RLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLS 513 (790)
Q Consensus 435 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (790)
++.+.. .+-....|...+..+...|+.+.|. .++++.....
T Consensus 333 e~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~------------------------------------- 374 (679)
T 4e6h_A 333 MQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI------------------------------------- 374 (679)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-------------------------------------
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-------------------------------------
Confidence 766654 3336677777777777777777775 7777665421
Q ss_pred HHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHH
Q 003872 514 EIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDM 593 (790)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (790)
|.+..+
T Consensus 375 --------------------------------------------------------------------------P~s~~L 380 (679)
T 4e6h_A 375 --------------------------------------------------------------------------PNSAVL 380 (679)
T ss_dssp --------------------------------------------------------------------------TTCHHH
T ss_pred --------------------------------------------------------------------------CCCHHH
Confidence 223445
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCC---------CC------------ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGV---------HP------------VNYTYNSMMSSFVKKGYFNQAWGVLNEM 652 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~---------~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m 652 (790)
+-.++...-+.|+++.|..+|+.+.+... .| ....|...+....+.|..+.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55666667777788888888877765310 13 1235777777777778888888888888
Q ss_pred hhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-
Q 003872 653 GEKFCPTDIATYNVVIQGLGKM-GRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP- 730 (790)
Q Consensus 653 ~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 730 (790)
.+.-......+|...+..-.+. ++.+.|.++|+..++. .+-+...|..++......|+.+.|+.+|++.......+
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 7651111222333222222233 4578888888888877 34466667777777777788888888888887653211
Q ss_pred -ChHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 731 -DVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 731 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
....|..++.-=.+.|+.+.+..+.++|.+.
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2456777777777778888888888888765
No 42
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=6.7e-10 Score=121.28 Aligned_cols=446 Identities=13% Similarity=0.030 Sum_probs=263.5
Q ss_pred CcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC---hhHHHH
Q 003872 99 FLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQ---LGLAMS 175 (790)
Q Consensus 99 ~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~ 175 (790)
...+.+..++.....+ +-|..+|..++..+.+.+.++.+..+|+.+... ++.+...|...+..-.+.++ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455566667766666 358999999999999999999999999999887 56677888888888888888 999999
Q ss_pred HHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccch--------HHHHHHHHHHHhcCCC-CCc-hhhHHHHHHH
Q 003872 176 ILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRR--------SEFKQVFERLKEQKEF-EFD-IYGYNICIHA 245 (790)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~~~~-~~~-~~~~~~li~~ 245 (790)
+|++.+.... ..|++..|...+....+.++. +.+.++|+......|. .++ ...|...+..
T Consensus 125 lfeRal~~~~----------~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f 194 (679)
T 4e6h_A 125 VLARCLSKEL----------GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHF 194 (679)
T ss_dssp HHHHHTCSSS----------CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHhcC----------CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 9998876310 127788888888776665543 3455788887776676 554 4677777765
Q ss_pred Hhc---------cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003872 246 FGC---------WGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGC 316 (790)
Q Consensus 246 ~~~---------~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 316 (790)
... .++++.+..+|+.........-..+|......-...+. ..+.+++.+.
T Consensus 195 ~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~------------------- 254 (679)
T 4e6h_A 195 LEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL------------------- 254 (679)
T ss_dssp HHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-------------------
T ss_pred HHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-------------------
Confidence 432 34567888899988853111112233222111111011 0011111110
Q ss_pred HhcCCHHHHHHHHHHHHH--CCCC---------------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHH
Q 003872 317 CKSYRMDDAMKIFSEMQY--NGLI---------------P-----D---TVVYNSLLNGMFKSR-------KVMEACQLF 364 (790)
Q Consensus 317 ~~~~~~~~a~~~~~~m~~--~~~~---------------p-----~---~~~~~~li~~~~~~~-------~~~~a~~l~ 364 (790)
..+++.|...+.++.. .++. | + ...|...+..--..+ ..+.+..+|
T Consensus 255 --~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Y 332 (679)
T 4e6h_A 255 --SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVY 332 (679)
T ss_dssp --HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHH
Confidence 0111222222222110 0000 0 0 123444443322221 123455667
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-
Q 003872 365 EKMVQDGVRTSCWTHNILIDGLFRNGRAEAAY-TLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGF- 442 (790)
Q Consensus 365 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~- 442 (790)
++.+... +-....|...+..+...|+.+.|. +++++.... ++.+...|-..+....+.|+++.|..+|+.+.....
T Consensus 333 e~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~ 410 (679)
T 4e6h_A 333 MQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHL 410 (679)
T ss_dssp HHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 6666542 335666666666666777777775 777777654 223444555666666677777777777777765310
Q ss_pred --------cc------------CHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccC
Q 003872 443 --------VV------------DLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDY 502 (790)
Q Consensus 443 --------~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 502 (790)
.| ....|...+....+.|+.+.|+.+|..+.+.. |.
T Consensus 411 ~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~--~~---------------------- 466 (679)
T 4e6h_A 411 DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK--KL---------------------- 466 (679)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG--GG----------------------
T ss_pred HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CC----------------------
Confidence 12 12356677777777788888888888876630 00
Q ss_pred CCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHh
Q 003872 503 TPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQ 582 (790)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 582 (790)
T Consensus 467 -------------------------------------------------------------------------------- 466 (679)
T 4e6h_A 467 -------------------------------------------------------------------------------- 466 (679)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcchHHHHHHHHHHHHHc-CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--
Q 003872 583 GKGMGTFDIDMVNTFLSIFLAK-GKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT-- 659 (790)
Q Consensus 583 ~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-- 659 (790)
....+|...+..--+. ++.+.|..+|+...+. .+-+...|...+......|+.+.|..+|+........+
T Consensus 467 ------~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 467 ------VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp ------SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred ------CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 0011122222222222 3477778887777665 24455666677777777788888888888777763321
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 660 DIATYNVVIQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 660 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
....|..++..-.+.|+.+.+.++.+++.+..
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34567777777777788888888888877764
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.48 E-value=4.7e-12 Score=119.44 Aligned_cols=199 Identities=9% Similarity=-0.050 Sum_probs=122.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccccc
Q 003872 117 VDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
++...+..+...+.+.|++++|+..|++..+.. +.++..+..+...+.+.|++++|...++++++. .
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------------~ 69 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR------------T 69 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------C
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------C
Confidence 344556666666666677777777776666654 235566666666666677777777776666664 3
Q ss_pred CCCcchHHHHHHHHHhc-----------cchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHC
Q 003872 197 LPGCVACNELLVALRKS-----------DRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK 265 (790)
Q Consensus 197 ~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 265 (790)
+.+...+..+...+... |++++|+..++...+. -|-+...+..+...+...|++++|+..|++..+.
T Consensus 70 P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 33445566666666666 7778888877777752 2224566777777777777777777777777776
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 266 GLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQ 333 (790)
Q Consensus 266 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 333 (790)
. .+...+..+..++...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..
T Consensus 148 ~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 148 E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 5 466777777777777777777777777776653 4456666667777777777777777666543
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=9.3e-12 Score=131.77 Aligned_cols=375 Identities=11% Similarity=-0.026 Sum_probs=241.4
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCCh---HHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003872 205 ELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDL---HTSLRLFKEMKEKGLVPDLHTYNSLIQVL 281 (790)
Q Consensus 205 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 281 (790)
.+...+.+.|++++|.+.|+...+ .+ +...+..+...|...|+. ++|..+|++..+. ++..+..+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~-~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAE-LG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HT---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 366777889999999999999987 34 344555566667777887 8999999998864 555666666655
Q ss_pred HhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003872 282 CVVG-----KVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRM---DDAMKIFSEMQYNGLIPDTVVYNSLLNGMFK 353 (790)
Q Consensus 282 ~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 353 (790)
...+ +.++|...|++..+.|. ++ .+..+...|...+.. ..+.+.+......| +......+...|..
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 5554 78899999999988763 33 566677777665543 34555565555544 34456666777777
Q ss_pred cCCHHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc--
Q 003872 354 SRKVMEACQ----LFEKMVQDGVRTSCWTHNILIDGLFRNG---RAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCRE-- 424 (790)
Q Consensus 354 ~~~~~~a~~----l~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-- 424 (790)
.+.++++.. +++..... +...+..|...|...| +.++|++.|++..+.|.. +...+..+...|...
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATL 228 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGG
T ss_pred CCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCC
Confidence 775544444 44443332 3337888888999999 999999999999998754 555445666666554
Q ss_pred --CCHHHHHHHHHHHHhCCCccCHHHHHHHHHH-H--HhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhcccccc
Q 003872 425 --GQIEEALRLVEEMEGRGFVVDLVTISSLLIG-F--HKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKR 499 (790)
Q Consensus 425 --g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 499 (790)
+++++|..+|+... .| +...+..|... + ...+++++|...|++..+.+
T Consensus 229 ~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----------------------- 281 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----------------------- 281 (452)
T ss_dssp SSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-----------------------
T ss_pred CCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-----------------------
Confidence 69999999999988 33 55666666666 4 46889999999999887643
Q ss_pred ccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhH
Q 003872 500 KDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGL 579 (790)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 579 (790)
T Consensus 282 -------------------------------------------------------------------------------- 281 (452)
T 3e4b_A 282 -------------------------------------------------------------------------------- 281 (452)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhcCCCCcchHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHH
Q 003872 580 RVQGKGMGTFDIDMVNTFLSIFLAKG-----KLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVK----KGYFNQAWGVLN 650 (790)
Q Consensus 580 ~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 650 (790)
++..+..+...|. .| ++++|...|+... .| +...+..|...|.. ..++++|...|+
T Consensus 282 ----------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 282 ----------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp ----------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 3344455666665 44 8999999999887 43 56677777777766 349999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 651 EMGEKFCPTDIATYNVVIQGLGK----MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 651 ~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
+..+.|. ......|...|.. ..+.++|..+|+...+.+ .++.......+......++..+|.++.++...
T Consensus 347 ~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 347 TAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9998764 3345556666654 468999999999988876 23333333333333344567778888777664
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.46 E-value=3.2e-11 Score=117.15 Aligned_cols=174 Identities=10% Similarity=0.059 Sum_probs=149.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-CHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT-DIATYNVVI 668 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li 668 (790)
+..++..+...|...|++++|...|+.+.+.. +.+...+..+...|...|++++|..+++++.+.+..| +...+..+.
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la 148 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLG 148 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHH
Confidence 45677888999999999999999999998775 4577889999999999999999999999998833334 566788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCH
Q 003872 669 QGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL 748 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 748 (790)
..|...|++++|...++++.+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+...+.+.|++
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 149 LVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCH
Confidence 99999999999999999999874 4568889999999999999999999999998742 34677888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCccc
Q 003872 749 KEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 749 ~~A~~~~~~m~~~~~~p~~~t 769 (790)
++|.++++++.+. .|+...
T Consensus 226 ~~A~~~~~~~~~~--~p~~~~ 244 (252)
T 2ho1_A 226 DTAASYGLQLKRL--YPGSLE 244 (252)
T ss_dssp HHHHHHHHHHHHH--CTTSHH
T ss_pred HHHHHHHHHHHHH--CCCCHH
Confidence 9999999999865 455433
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=2.4e-11 Score=119.58 Aligned_cols=164 Identities=15% Similarity=0.038 Sum_probs=88.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK 673 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 673 (790)
+..+...|...|++++|...|+...+.. +.+...|..+...|...|++++|+..+++..+. .+.+...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHH
Confidence 3445555555555555555555555443 334455556666666666666666666666554 22344455555522333
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhc-CCCCC------hHHHHHHHHHHh
Q 003872 674 MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGR---FDEANMLFEQMRTS-GINPD------VVTFNTLIEVNG 743 (790)
Q Consensus 674 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~-g~~p~------~~~~~~l~~~~~ 743 (790)
.+++++|.+.++++.+.. +.+...+..+..++...|+ +++|...++++.+. .-.|+ ..+|..+...|.
T Consensus 155 ~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 346666666666666553 2334555555555555555 55566666655542 11122 145556666666
Q ss_pred ccCCHHHHHHHHHHHHhC
Q 003872 744 KAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 744 ~~g~~~~A~~~~~~m~~~ 761 (790)
+.|++++|.+++++..+.
T Consensus 233 ~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 233 INRDKVKADAAWKNILAL 250 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 666666666666666643
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=1.4e-10 Score=113.98 Aligned_cols=155 Identities=12% Similarity=-0.012 Sum_probs=88.7
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHHHHH
Q 003872 594 VNTFLSIFLA----KGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVK----KGYFNQAWGVLNEMGEKFCPTDIATYN 665 (790)
Q Consensus 594 ~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 665 (790)
+..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 3344444444 555555555555555543 44555555555555 666666666666666543 344555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChHHHHH
Q 003872 666 VVIQGLGK----MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK----AGRFDEANMLFEQMRTSGINPDVVTFNT 737 (790)
Q Consensus 666 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 737 (790)
.+...|.. .+++++|...+++..+.+ +...+..+..+|.. .+++++|...|++..+.+ +...+..
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 55555555 566666666666665543 34555556666666 666666666666666542 2445555
Q ss_pred HHHHHhc----cCCHHHHHHHHHHHHhC
Q 003872 738 LIEVNGK----AGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 738 l~~~~~~----~g~~~~A~~~~~~m~~~ 761 (790)
+...|.+ .|++++|++++++..+.
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 6666666 66666666666666554
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=5e-11 Score=115.76 Aligned_cols=201 Identities=11% Similarity=-0.061 Sum_probs=104.2
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003872 84 ACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVS 163 (790)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 163 (790)
+..+..+...+...|++++|...++.+.... +.+..++..+...|...|++++|.+.|+++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4445555555555555555555555555443 22445555555555555555555555555554431 234444444444
Q ss_pred HHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCC-chhhHHHH
Q 003872 164 LVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEF-DIYGYNIC 242 (790)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 242 (790)
+...|++++|...+++ +.+ .+..| +...+..+
T Consensus 115 ~~~~g~~~~A~~~~~~----------------------------------------------~~~-~~~~~~~~~~~~~l 147 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLE----------------------------------------------ASQ-DTLYPERSRVFENL 147 (252)
T ss_dssp HHHTTCHHHHHHHHHH----------------------------------------------HTT-CTTCTTHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHH----------------------------------------------HHh-CccCcccHHHHHHH
Confidence 4444444444444444 432 11112 34445555
Q ss_pred HHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003872 243 IHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRM 322 (790)
Q Consensus 243 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 322 (790)
...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 148 GLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCH
Confidence 5555555666666666665554421 134555555556666666666666666655442 33445555555555566666
Q ss_pred HHHHHHHHHHHHC
Q 003872 323 DDAMKIFSEMQYN 335 (790)
Q Consensus 323 ~~a~~~~~~m~~~ 335 (790)
++|.++++++.+.
T Consensus 226 ~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 226 DTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=5.6e-11 Score=112.99 Aligned_cols=175 Identities=10% Similarity=-0.043 Sum_probs=148.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCC-CHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKK-GYFNQAWGVLNEMGEKFCPT-DIATYNVV 667 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~-~~~~~~~l 667 (790)
+...+..+...|...|++++|...++.+.+.. +.+..++..+...+... |++++|...++++.+.+..| +...+..+
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 119 (225)
T 2vq2_A 41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK 119 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH
Confidence 45677888999999999999999999998775 55778899999999999 99999999999999832233 36778889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCC
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGR 747 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 747 (790)
...|...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.....+...+..+...+...|+
T Consensus 120 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (225)
T 2vq2_A 120 GICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN 197 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc
Confidence 999999999999999999999874 446888999999999999999999999999885322467778888888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCccc
Q 003872 748 LKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 748 ~~~A~~~~~~m~~~~~~p~~~t 769 (790)
.++|..+++.+.+. .|+...
T Consensus 198 ~~~a~~~~~~~~~~--~p~~~~ 217 (225)
T 2vq2_A 198 AQAAYEYEAQLQAN--FPYSEE 217 (225)
T ss_dssp HHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHHh--CCCCHH
Confidence 99999999998754 465544
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=4.6e-11 Score=113.58 Aligned_cols=200 Identities=10% Similarity=-0.072 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCC
Q 003872 119 SETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLP 198 (790)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (790)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++++. .+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------~~~ 74 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI------------KPD 74 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------CTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------CCC
Confidence 4455556666666666666666666666553 234555666666666666666666666666553 223
Q ss_pred CcchHHHHHHHHHhc-cchHHHHHHHHHHHhcCCC-CCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 199 GCVACNELLVALRKS-DRRSEFKQVFERLKEQKEF-EFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 199 ~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
+...+..+...+... |++++|...++.+.+ .+. +.+...+..+...+...|++++|...++++.+... .+...+..
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 152 (225)
T 2vq2_A 75 SAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKE 152 (225)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHH
Confidence 344455555555555 566666666655554 222 22245555566666666666666666666655421 13555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHE-PNEFTHRIIIQGCCKSYRMDDAMKIFSEMQY 334 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (790)
+...+...|++++|...++++.+.. + .+...+..+...+...|+.+.|..+++.+.+
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5566666666666666666655442 2 3444555555555556666666666655543
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.43 E-value=4.2e-10 Score=110.61 Aligned_cols=224 Identities=11% Similarity=-0.121 Sum_probs=163.5
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003872 235 DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCV----VGKVKDALIVWEELKGSGHEPNEFTHR 310 (790)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 310 (790)
+..++..+...+...|++++|...|++..+. -+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455666666677777777777777777663 245566666677777 777777777777776654 566666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003872 311 IIIQGCCK----SYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFK----SRKVMEACQLFEKMVQDGVRTSCWTHNIL 382 (790)
Q Consensus 311 ~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~l~~~~~~~~~~~~~~~~~~l 382 (790)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777777654 56667777777777 778888888888877765 45666677
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003872 383 IDGLFR----NGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCR----EGQIEEALRLVEEMEGRGFVVDLVTISSLLI 454 (790)
Q Consensus 383 i~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 454 (790)
...|.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 788888888888877764 45667777777777 888888888888887765 3566777777
Q ss_pred HHHh----cCCchHHHHHHHHHHhCC
Q 003872 455 GFHK----YGRWDFTERLMKHIRDGN 476 (790)
Q Consensus 455 ~~~~----~g~~~~a~~~~~~~~~~~ 476 (790)
.|.. .+++++|...+++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8887 888888888888887754
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=5.4e-12 Score=124.49 Aligned_cols=249 Identities=8% Similarity=-0.034 Sum_probs=191.2
Q ss_pred HhccchHHHHHHHHHHHhcCCCC--CchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 003872 211 RKSDRRSEFKQVFERLKEQKEFE--FDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVK 288 (790)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 288 (790)
...|++++|+..|+.+.+..... .+...+..+...+...|++++|...|+++.+... .+..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence 34588999999999998742222 2467888999999999999999999999988743 36888999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 289 DALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMV 368 (790)
Q Consensus 289 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~ 368 (790)
+|...|++..+.. +.+...+..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++...
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999998764 456788899999999999999999999999875 3555555555556677799999999998877
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccC
Q 003872 369 QDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFV---DGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVD 445 (790)
Q Consensus 369 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 445 (790)
... +++...+ .++..+...++.+.|+..+.......... +...+..+...+...|++++|...++++.+.... +
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~ 248 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-N 248 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-T
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-h
Confidence 653 3343333 46777788888999999998887653211 1467888889999999999999999999876422 2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHH
Q 003872 446 LVTISSLLIGFHKYGRWDFTERLM 469 (790)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~a~~~~ 469 (790)
+.....++...|++++|.+.+
T Consensus 249 ---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 ---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---CHHHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHHHhhHHHH
Confidence 233355666777777776665
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=7.6e-11 Score=120.52 Aligned_cols=231 Identities=11% Similarity=0.027 Sum_probs=164.8
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGK-IDFAIEILDYMEELGTSLSPNVYDSVL 161 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (790)
...+|..+..++.+.|++++|+..++.+.+.+. -+..+|..+..++...|+ +++|+..|+++.+... .+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 346677777788888888888888888888763 367788888888888886 8888888888888753 3677888888
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNI 241 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (790)
.++...|++++|+..|+++++. .+.+...|..+..++.+.|++++|+..|+.+.+. -+-+...|+.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~l------------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~ 239 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQ------------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQ 239 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh------------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 8888888888888888888876 4556677777777888888888888888877763 2235667777
Q ss_pred HHHHHhc-cCChHHH-----HHHHHHHHHCCCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 242 CIHAFGC-WGDLHTS-----LRLFKEMKEKGLVPDLHTYNSLIQVLCVVG--KVKDALIVWEELKGSGHEPNEFTHRIII 313 (790)
Q Consensus 242 li~~~~~-~g~~~~a-----~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li 313 (790)
+..++.. .|..++| +..|++..+.... +...|..+..++...| ++++|.+.+.++ +.. +.+...+..+.
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La 316 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLV 316 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHH
Confidence 7777777 4554666 4666666665322 4556666666666666 467777777666 322 44556666666
Q ss_pred HHHHhcC---------CHHHHHHHHHHH
Q 003872 314 QGCCKSY---------RMDDAMKIFSEM 332 (790)
Q Consensus 314 ~~~~~~~---------~~~~a~~~~~~m 332 (790)
.+|.+.+ ..++|.++|+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 6666653 246677777776
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=9e-11 Score=119.98 Aligned_cols=249 Identities=10% Similarity=0.008 Sum_probs=184.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHhccCCCCCccccc
Q 003872 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQ-LGLAMSILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
...+|..+...+...|++++|++.|+++.+... .+..+|+.+..++...|+ +++|+..|+++++. .
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l------------~ 162 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE------------Q 162 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------------C
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH------------C
Confidence 346778888889999999999999999999863 477889999999999996 99999999999986 4
Q ss_pred CCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 197 LPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 197 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
+.+...|+.+...+...|++++|+..|+++.+. -+-+...|..+..++...|++++|+..|+++.+.... +...|+.
T Consensus 163 P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~ 239 (382)
T 2h6f_A 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQ 239 (382)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 566788888888888889999999998888863 2336778888888888888888888888888877543 6777888
Q ss_pred HHHHHHh-cCCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003872 277 LIQVLCV-VGKVKDA-----LIVWEELKGSGHEPNEFTHRIIIQGCCKSY--RMDDAMKIFSEMQYNGLIPDTVVYNSLL 348 (790)
Q Consensus 277 ll~~~~~-~~~~~~a-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li 348 (790)
+..++.. .|..++| +..+++..+.. +-+...|..+...+...| ++++|++.+.++ +. -+.+...+..+.
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La 316 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLV 316 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHH
Confidence 8888887 5554666 46677766653 445667777777777766 577777777776 32 233456667777
Q ss_pred HHHHhcC---------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 003872 349 NGMFKSR---------KVMEACQLFEKM-VQDGVRTSCWTHNILIDGL 386 (790)
Q Consensus 349 ~~~~~~~---------~~~~a~~l~~~~-~~~~~~~~~~~~~~li~~~ 386 (790)
..|.+.| ..++|.++++.+ .+.. +.....|..+...+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 7776653 247777777777 4432 22334455444444
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.41 E-value=6.4e-11 Score=116.51 Aligned_cols=236 Identities=10% Similarity=-0.037 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCC
Q 003872 154 PNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFE 233 (790)
Q Consensus 154 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 233 (790)
+..+......+...|++++|+..|+++++. .+.+...+..+...+...|++++|.+.++...+ .+-.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~ 69 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAK------------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNA 69 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHT------------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCc
Confidence 344556666777778888888888777764 233445677777777788888888888877775 2211
Q ss_pred Cc--hhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003872 234 FD--IYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRI 311 (790)
Q Consensus 234 ~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 311 (790)
++ ...|..+...+...|++++|...|++..+.... +..++..+...|...|++++|...+++..+.. +.+...+..
T Consensus 70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 147 (272)
T 3u4t_A 70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYE 147 (272)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHH
Confidence 21 233677777777777888887777777765322 45667777777777777777777777776652 444555655
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHH
Q 003872 312 IIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRK---VMEACQLFEKMVQDG-VRTS------CWTHNI 381 (790)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~l~~~~~~~~-~~~~------~~~~~~ 381 (790)
+...+...+++++|.+.|++..+.. +.+...+..+...+...++ .++|...+++..+.. -.|+ ..+|..
T Consensus 148 l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 226 (272)
T 3u4t_A 148 LGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEY 226 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 5523334457777777777776542 1234555556666666665 566666666655421 0122 134555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 003872 382 LIDGLFRNGRAEAAYTLFCDLKKK 405 (790)
Q Consensus 382 li~~~~~~~~~~~a~~~~~~~~~~ 405 (790)
+...|...|++++|.+.+++..+.
T Consensus 227 l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 227 IAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Confidence 566666666666666666666554
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.41 E-value=1.2e-11 Score=121.90 Aligned_cols=222 Identities=10% Similarity=-0.055 Sum_probs=132.8
Q ss_pred hcCCcchHHHHHHHhhhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhH
Q 003872 96 RAGFLEEVPSLLNSMQEDDV---VVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGL 172 (790)
Q Consensus 96 ~~~~~~~a~~l~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 172 (790)
..|++++|+..++.+.+... +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34667777777777776532 1235667777777778888888888888877764 2356777777777888888888
Q ss_pred HHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCCh
Q 003872 173 AMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDL 252 (790)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 252 (790)
|...|+++++. .+.+...+..+...|...|++++|...|+.+.+. .|+.......+..+...|++
T Consensus 96 A~~~~~~al~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~ 160 (275)
T 1xnf_A 96 AYEAFDSVLEL------------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDE 160 (275)
T ss_dssp HHHHHHHHHHH------------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhc------------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCH
Confidence 88877777765 2334556666666677777777777777666652 23333333333344555666
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003872 253 HTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHE---PNEFTHRIIIQGCCKSYRMDDAMKIF 329 (790)
Q Consensus 253 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 329 (790)
++|...+++..... +++...+ .++..+...++.++|...+.+....... .+...+..+...|...|++++|...|
T Consensus 161 ~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 238 (275)
T 1xnf_A 161 KQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238 (275)
T ss_dssp HHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666665555442 1222222 2445555555666666666665433100 01244555555555555566666555
Q ss_pred HHHHHC
Q 003872 330 SEMQYN 335 (790)
Q Consensus 330 ~~m~~~ 335 (790)
++..+.
T Consensus 239 ~~al~~ 244 (275)
T 1xnf_A 239 KLAVAN 244 (275)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 555543
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.40 E-value=2.2e-11 Score=117.50 Aligned_cols=129 Identities=15% Similarity=0.085 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINV 706 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~ 706 (790)
..+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+..+
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHH
Confidence 334444444444444444444444444331 2233344444444444444444444444444432 2234444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 707 LGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 707 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
+...|++++|...++++.+.. +.+..+|..+..++...|++++|.+.++++.
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 444444444444444444321 1123444444444444455555555544444
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.39 E-value=3.3e-11 Score=116.27 Aligned_cols=202 Identities=15% Similarity=0.054 Sum_probs=119.4
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVL 161 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (790)
.++..|..+...+...|++++|...++.+.... +.+..++..+...+...|++++|++.|+++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345566667777778888888888888887764 3367777788888888888888888888887764 23667777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNI 241 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (790)
..+...|++++|...++++++. .+.+...+..+...+...|++++|...++.+.+. .+.+...+..
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 164 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA------------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQ 164 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH------------TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHH
Confidence 8888888888888888777765 2334455666666666666666666666666542 2224455566
Q ss_pred HHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003872 242 CIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGS 300 (790)
Q Consensus 242 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 300 (790)
+...+...|++++|...++++.+... .+..++..+..++...|++++|...++++.+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 165 FGMCLANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 66666666666666666666655422 24555555666666666666666666665544
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.38 E-value=5.2e-11 Score=124.99 Aligned_cols=159 Identities=13% Similarity=-0.003 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC---
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGV-HPV----NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP-TD--- 660 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~--- 660 (790)
...++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+.... ++
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 265 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH
Confidence 345678889999999999999999988764310 111 237788888999999999999999988754111 11
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-
Q 003872 661 -IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRTS----GINP- 730 (790)
Q Consensus 661 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 730 (790)
..++..+...|...|++++|...++++.+......+ ..++..+..+|...|++++|...+++..+. +..+
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 345 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSG 345 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 457788888999999999999999998765311222 557788889999999999999999987752 2122
Q ss_pred ChHHHHHHHHHHhccCCH
Q 003872 731 DVVTFNTLIEVNGKAGRL 748 (790)
Q Consensus 731 ~~~~~~~l~~~~~~~g~~ 748 (790)
...++..+...+...|+.
T Consensus 346 ~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 346 ELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhhHh
Confidence 245666777777777764
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=2.9e-11 Score=127.27 Aligned_cols=277 Identities=13% Similarity=0.045 Sum_probs=193.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-ccCHHHH
Q 003872 379 HNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDG----ITFSIVVLQLCREGQIEEALRLVEEMEGR----GF-VVDLVTI 449 (790)
Q Consensus 379 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~ 449 (790)
+..+...+...|++++|+..|+++.+.... +. ..+..+...+...|++++|...+++..+. +. ......+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334455566667777777777766665322 22 34666666677777777777777766543 11 2234567
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccc
Q 003872 450 SSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDAN 529 (790)
Q Consensus 450 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (790)
..+...|...|++++|...+++..+....
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------------------------------------------------- 158 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQ--------------------------------------------------- 158 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------------------------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH---------------------------------------------------
Confidence 77788888888988888888877651000
Q ss_pred cCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCC---
Q 003872 530 LGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGK--- 606 (790)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--- 606 (790)
.+..+....++..+...|...|+
T Consensus 159 ------------------------------------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (411)
T 4a1s_A 159 ------------------------------------------------------LGDRLSEGRALYNLGNVYHAKGKHLG 184 (411)
T ss_dssp ------------------------------------------------------HTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------hhchHHHHHHHHHHHHHHHHcCcccc
Confidence 00011234567788888888899
Q ss_pred --------------hHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC----HH
Q 003872 607 --------------LNLACKLFEIFTDM----GV-HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP-TD----IA 662 (790)
Q Consensus 607 --------------~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~ 662 (790)
+++|...+++..+. +- .....++..+...|...|++++|...+++..+.... ++ ..
T Consensus 185 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (411)
T 4a1s_A 185 QRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERR 264 (411)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 89999888776542 11 122347788888999999999999999988764211 12 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-ChH
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQGGGYL----DVVMYNTLINVLGKAGRFDEANMLFEQMRTS----GINP-DVV 733 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ 733 (790)
++..+...|...|++++|...++++........ ...++..+..+|...|++++|...+++.... +..+ ...
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 778888999999999999999999877531111 2567888999999999999999999998752 1111 145
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 734 TFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 734 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
++..+..+|.+.|++++|.+++++..+.
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 7888999999999999999999998753
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.36 E-value=4e-11 Score=125.88 Aligned_cols=280 Identities=15% Similarity=0.072 Sum_probs=192.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcc-C
Q 003872 375 SCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVD----GITFSIVVLQLCREGQIEEALRLVEEMEGR----GFVV-D 445 (790)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~-~ 445 (790)
....+......+...|++++|...|++..+.... + ...+..+...+...|++++|...++++... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444455555666666677776666666655322 2 234556666667777777777777665432 2111 2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccc
Q 003872 446 LVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLE 525 (790)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (790)
...+..+...+...|++++|...+++..+.. +..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-------------------------------------------- 120 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDIS--REL-------------------------------------------- 120 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH--------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--Hhc--------------------------------------------
Confidence 4566777778888888888888888766510 000
Q ss_pred cccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcC
Q 003872 526 TDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKG 605 (790)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 605 (790)
+.......++..+...|...|
T Consensus 121 -----------------------------------------------------------~~~~~~~~~~~~l~~~~~~~g 141 (406)
T 3sf4_A 121 -----------------------------------------------------------NDKVGEARALYNLGNVYHAKG 141 (406)
T ss_dssp -----------------------------------------------------------TCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------ccccchHHHHHHHHHHHHHcC
Confidence 000112446677788888888
Q ss_pred C--------------------hHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CC
Q 003872 606 K--------------------LNLACKLFEIFTDM----GV-HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFC-PT 659 (790)
Q Consensus 606 ~--------------------~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~ 659 (790)
+ +++|...++...+. +- +....++..+...|...|++++|...+++..+... .+
T Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 8 88888888776432 11 11234678888899999999999999998875411 11
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C
Q 003872 660 D----IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRTS----G 727 (790)
Q Consensus 660 ~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g 727 (790)
+ ..++..+...|...|++++|...+++........++ ..++..+..+|...|++++|...+++..+. +
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 2 237788889999999999999999998765311112 567888999999999999999999998752 1
Q ss_pred CCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 728 INPD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 728 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
-.+. ..++..+..+|...|++++|.+++++..+
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 56788899999999999999999998764
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=3.7e-11 Score=126.40 Aligned_cols=137 Identities=10% Similarity=-0.020 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-C----
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVH-PV----NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP-T---- 659 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~---- 659 (790)
....+..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+.... .
T Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 301 (411)
T 4a1s_A 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREV 301 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3456788899999999999999999887654210 11 237788889999999999999999988764211 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 660 DIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 660 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
...++..+...|...|++++|...++++........+ ..++..+..+|...|++++|...|++..+.
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 302 EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1457788889999999999999999998765311112 447788899999999999999999998863
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=4.9e-11 Score=121.45 Aligned_cols=275 Identities=15% Similarity=0.063 Sum_probs=187.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcc-CHHHHHH
Q 003872 381 ILIDGLFRNGRAEAAYTLFCDLKKKGKFVD----GITFSIVVLQLCREGQIEEALRLVEEMEGR----GFVV-DLVTISS 451 (790)
Q Consensus 381 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~ 451 (790)
.....+...|++++|...++++.+.... + ...+..+...+...|++++|...+++..+. +..+ ....+..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3344556666666666666666654322 2 244556666666777777777776665432 1111 2456677
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccC
Q 003872 452 LLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLG 531 (790)
Q Consensus 452 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (790)
+...+...|++++|...+++..+.....
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------------------------------------------- 116 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISREL---------------------------------------------------- 116 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHh----------------------------------------------------
Confidence 7778888888888888888765410000
Q ss_pred CCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCC-----
Q 003872 532 SGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGK----- 606 (790)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----- 606 (790)
+.......++..+...|...|+
T Consensus 117 -----------------------------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~ 143 (338)
T 3ro2_A 117 -----------------------------------------------------NDKVGEARALYNLGNVYHAKGKSFGCP 143 (338)
T ss_dssp -----------------------------------------------------TCHHHHHHHHHHHHHHHHHHHHTSSSS
T ss_pred -----------------------------------------------------cCchHHHHHHHHHHHHHHHcCcccccc
Confidence 0001123456677777778888
Q ss_pred ---------------hHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC----H
Q 003872 607 ---------------LNLACKLFEIFTDM----GV-HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP-TD----I 661 (790)
Q Consensus 607 ---------------~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~ 661 (790)
+++|...++...+. +. .....++..+...+...|++++|...+++..+.... ++ .
T Consensus 144 ~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 223 (338)
T 3ro2_A 144 GPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 223 (338)
T ss_dssp SCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 88888888776432 11 122346778888999999999999999988654111 12 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-Ch
Q 003872 662 ATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRTS----GINP-DV 732 (790)
Q Consensus 662 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 732 (790)
.++..+...|...|++++|...+++.........+ ..++..+..+|...|++++|...++++.+. +-.+ ..
T Consensus 224 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 303 (338)
T 3ro2_A 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 303 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 37788888999999999999999998765311122 567788889999999999999999988752 1111 14
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 733 VTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 733 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
.++..+...|.+.|++++|.+++++..+.
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 304 RACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 57788999999999999999999998754
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=9.9e-10 Score=109.96 Aligned_cols=172 Identities=12% Similarity=0.074 Sum_probs=142.0
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPV-NY-TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV 666 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 666 (790)
.+..+|..++..+.+.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~ 173 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVT 173 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 35667888999999999999999999999985 444 43 89999999999999999999999999874 344555554
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC--ChHHHHHHHHHH
Q 003872 667 VIQGLG-KMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSG-INP--DVVTFNTLIEVN 742 (790)
Q Consensus 667 li~~~~-~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~l~~~~ 742 (790)
...... ..|++++|..+|+++++.. +-+...|..++..+.+.|++++|+.+|++..... +.| ....|..++..+
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 443322 3699999999999999874 4478899999999999999999999999999863 455 367889999999
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 743 GKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 743 ~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
.+.|+.++|..+++++.+. .|+.
T Consensus 252 ~~~g~~~~a~~~~~~a~~~--~p~~ 274 (308)
T 2ond_A 252 SNIGDLASILKVEKRRFTA--FREE 274 (308)
T ss_dssp HHHSCHHHHHHHHHHHHHH--TTTT
T ss_pred HHcCCHHHHHHHHHHHHHH--cccc
Confidence 9999999999999999865 4543
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=1.8e-10 Score=105.48 Aligned_cols=172 Identities=14% Similarity=0.076 Sum_probs=151.2
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
.++.+|..+...|...|++++|+..|++..+.. +-+...|..+...|.+.|++++|...+....... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 367789999999999999999999999998876 5678889999999999999999999999998873 44677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCH
Q 003872 669 QGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRL 748 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 748 (790)
..+...++++.|...++++.... +.+...+..+..+|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 89999999999999999999874 5578889999999999999999999999999852 33578899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCc
Q 003872 749 KEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 749 ~~A~~~~~~m~~~~~~p~~ 767 (790)
++|++.+++..+. .|+.
T Consensus 158 ~~A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 158 DEAVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHHHhC--CccC
Confidence 9999999999864 5654
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=1.3e-09 Score=109.13 Aligned_cols=220 Identities=7% Similarity=0.003 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-------HcCCH-------HHHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 003872 393 EAAYTLFCDLKKKGKFVDGITFSIVVLQLC-------REGQI-------EEALRLVEEMEGRGFVVDLVTISSLLIGFHK 458 (790)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 458 (790)
++|..+|++....... +...|..+...+. +.|++ ++|..+|++..+.-.+-+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4566666666554222 4555555555544 34664 8888888888873122256678888888888
Q ss_pred cCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCc
Q 003872 459 YGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAK 538 (790)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (790)
.|++++|..+|+++.+..
T Consensus 112 ~~~~~~A~~~~~~al~~~-------------------------------------------------------------- 129 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-------------------------------------------------------------- 129 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS--------------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHhcc--------------------------------------------------------------
Confidence 899999999988887621
Q ss_pred ccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCCCcchHH-HHHHHHHHHHHcCChHHHHHHHHHH
Q 003872 539 DEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGMGTFDID-MVNTFLSIFLAKGKLNLACKLFEIF 617 (790)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~ 617 (790)
+.++. +|..++..+.+.|++++|..+|+..
T Consensus 130 -------------------------------------------------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 130 -------------------------------------------------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp -------------------------------------------------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred -------------------------------------------------ccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 11232 6777888888889999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-
Q 003872 618 TDMGVHPVNYTYNSMMSSFV-KKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYL- 695 (790)
Q Consensus 618 ~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p- 695 (790)
.+.. +.+...|........ ..|++++|..+|++.++.. +.+...|..++..+.+.|++++|..+|++++......|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 8765 345555544433322 3699999999999998863 44788899999999999999999999999998632454
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 696 -DVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 696 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
....|..++..+.+.|+.++|..+++++.+.
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999874
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.31 E-value=1.8e-10 Score=117.26 Aligned_cols=137 Identities=12% Similarity=-0.016 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC----C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC---
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMG----V-HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP-TD--- 660 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g----~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~--- 660 (790)
...++..+...+...|++++|...++...+.. . .....++..+...+...|++++|...+++..+.... .+
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 261 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhH
Confidence 34567788899999999999999998876431 0 111237788888999999999999999988654111 12
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 661 -IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 661 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
..++..+...|...|++++|...++++.+......+ ..++..+..+|...|++++|...+++..+.
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 457778888999999999999999998765311112 447778899999999999999999999863
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=4.7e-10 Score=116.50 Aligned_cols=237 Identities=11% Similarity=0.011 Sum_probs=175.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC----CCcc-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHH
Q 003872 417 VVLQLCREGQIEEALRLVEEMEGR----GFVV-DLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEAT 491 (790)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~ 491 (790)
....+...|++++|...+++..+. +..+ ...++..+...|...|+++.|...+.+..+.....+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~----------- 177 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE----------- 177 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS-----------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc-----------
Confidence 445567889999999999988764 2222 346788888899999999999999888765100000
Q ss_pred hhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchh
Q 003872 492 MKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQ 571 (790)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 571 (790)
T Consensus 178 -------------------------------------------------------------------------------- 177 (383)
T 3ulq_A 178 -------------------------------------------------------------------------------- 177 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHhcCCHHHHH
Q 003872 572 LFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVH-P----VNYTYNSMMSSFVKKGYFNQAW 646 (790)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~----~~~~~~~li~~~~~~g~~~~A~ 646 (790)
...+....+++.+...|...|++++|...|+...+.... + ...++..+...|...|++++|+
T Consensus 178 -------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 178 -------------AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp -------------TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 000123456788999999999999999999887643111 1 1247888999999999999999
Q ss_pred HHHHHHhhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC---HHH
Q 003872 647 GVLNEMGEK----FC-PTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD---VVMYNTLINVLGKAGR---FDE 715 (790)
Q Consensus 647 ~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~ 715 (790)
..+++..+. +. +....++..+...|.+.|++++|...+++..+......+ ...+..+...|...|+ +++
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 324 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999998772 23 334667889999999999999999999998765211112 2335667888888899 777
Q ss_pred HHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 716 ANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 716 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
|..++++. +..|+ ...+..+...|...|++++|.+++++..+
T Consensus 325 al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 325 FFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777766 23333 45777899999999999999999999864
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.26 E-value=7.6e-10 Score=101.28 Aligned_cols=139 Identities=14% Similarity=0.052 Sum_probs=121.4
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
|.++.++..+...|.+.|++++|...+....... +.+...+..+...+...++++.|...+.+..+.. +.+...+..+
T Consensus 36 p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~l 113 (184)
T 3vtx_A 36 PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKL 113 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 4467788899999999999999999999988775 5567778888889999999999999999998863 4578889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDV 732 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 732 (790)
...|.+.|++++|++.|+++++.. +.+...|..+..+|.+.|++++|.+.|++..+. .|+.
T Consensus 114 g~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 114 GLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--THHH
T ss_pred HHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC--CccC
Confidence 999999999999999999999874 457888999999999999999999999999874 5554
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.25 E-value=9.3e-10 Score=114.28 Aligned_cols=129 Identities=7% Similarity=0.016 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHhh
Q 003872 343 VYNSLLNGMFKSRKVMEACQLFEKMVQ-----DGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKK----GKFVDGIT 413 (790)
Q Consensus 343 ~~~~li~~~~~~~~~~~a~~l~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~ 413 (790)
++..+...|...|++++|...+++..+ ...+....++..+...+.+.|++++|...+++.... +.......
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344444555555555555555555443 111222344555555555555555555555554432 11111122
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHhCCCcc-CHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 003872 414 FSIVVLQLCREGQ---IEEALRLVEEMEGRGFVV-DLVTISSLLIGFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 414 ~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (790)
+..+...+...|+ +++|+.++++. +..+ ....+..+...|...|++++|...+++..+
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444455555555 45555555443 2222 233455566666777777777776666654
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.22 E-value=5.3e-10 Score=119.08 Aligned_cols=163 Identities=9% Similarity=-0.088 Sum_probs=137.0
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHhhcCCCC
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKK---------GYFNQAWGVLNEMGEKFCPT 659 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~ 659 (790)
.++.++..+...|...|++++|...|+...+.. |+...+..+...|... |++++|+..+++..+.. +.
T Consensus 135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~ 211 (474)
T 4abn_A 135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VL 211 (474)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CC
Confidence 356678888999999999999999999988774 6678888888899998 99999999999998873 44
Q ss_pred CHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003872 660 DIATYNVVIQGLGKM--------GRADLASTILDKLMKQGGGY---LDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGI 728 (790)
Q Consensus 660 ~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 728 (790)
+...|..+..+|... |++++|...|+++.+.. + -+...|..+..+|...|++++|...|++..+..
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 288 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD- 288 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 688888999999888 99999999999999864 2 378889999999999999999999999998752
Q ss_pred CCChHHHHHHHHHHhccCCHHHHHHHHHH
Q 003872 729 NPDVVTFNTLIEVNGKAGRLKEAHYFLKM 757 (790)
Q Consensus 729 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 757 (790)
+-+...+..+..++...|++++|++.+.+
T Consensus 289 p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 289 PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22466788888999999999999875543
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=1.5e-09 Score=99.24 Aligned_cols=167 Identities=18% Similarity=0.094 Sum_probs=147.2
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ 669 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 669 (790)
....+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45567788899999999999999999988765 4577888999999999999999999999998873 457888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHH
Q 003872 670 GLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLK 749 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 749 (790)
.|...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999874 5678889999999999999999999999998863 335788999999999999999
Q ss_pred HHHHHHHHHHhC
Q 003872 750 EAHYFLKMMLDS 761 (790)
Q Consensus 750 ~A~~~~~~m~~~ 761 (790)
+|.++++++.+.
T Consensus 162 ~A~~~~~~~~~~ 173 (186)
T 3as5_A 162 EALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999998754
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.21 E-value=5e-09 Score=108.45 Aligned_cols=236 Identities=10% Similarity=-0.026 Sum_probs=173.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCc-c----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHH
Q 003872 417 VVLQLCREGQIEEALRLVEEMEGRGFV-V----DLVTISSLLIGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEAT 491 (790)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~m~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~ 491 (790)
....+...|++++|...++++.+.... + ...++..+...|...|+++.|...+.+..+......
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~----------- 175 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP----------- 175 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-----------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-----------
Confidence 344566789999999999998765211 1 245778888899999999999999988765100000
Q ss_pred hhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCCCCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchh
Q 003872 492 MKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSGEGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQ 571 (790)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 571 (790)
T Consensus 176 -------------------------------------------------------------------------------- 175 (378)
T 3q15_A 176 -------------------------------------------------------------------------------- 175 (378)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhHHHhHhHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHHH
Q 003872 572 LFSLARGLRVQGKGMGTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDM----GVH-PVNYTYNSMMSSFVKKGYFNQAW 646 (790)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~ 646 (790)
........+++.+...|...|++++|...|+...+. +-. ....++..+...|...|++++|+
T Consensus 176 -------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 176 -------------LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred -------------CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 000113556788999999999999999999887653 211 12356778889999999999999
Q ss_pred HHHHHHhh-----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCC---HHH
Q 003872 647 GVLNEMGE-----KFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGY--L-DVVMYNTLINVLGKAGR---FDE 715 (790)
Q Consensus 647 ~~~~~m~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~ 715 (790)
..+++..+ .. +....++..+...|.+.|++++|...+++..+..... + ....+..+...|...|+ +++
T Consensus 243 ~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~ 321 (378)
T 3q15_A 243 EHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD 321 (378)
T ss_dssp HHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999877 32 3336788889999999999999999999998864221 2 23456666667777888 777
Q ss_pred HHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 716 ANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 716 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
|..++++. +..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 322 al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 322 LLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88777763 22333 45667899999999999999999998863
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.21 E-value=5.3e-11 Score=119.68 Aligned_cols=181 Identities=14% Similarity=0.063 Sum_probs=132.6
Q ss_pred CCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----
Q 003872 80 YKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQED-------DVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEEL---- 148 (790)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---- 148 (790)
.+....++..+...+...|++++|..+++.+.+. ..+....++..+...|...|++++|.+.|++....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3356788889999999999999999999998873 23345678889999999999999999999998875
Q ss_pred --CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHH
Q 003872 149 --GT-SLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFER 225 (790)
Q Consensus 149 --~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 225 (790)
+. +....++..+...+...|++++|...++++++......... .+.....+..+...+...|++++|.+.++.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD----HPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21 22345788999999999999999999999887531100000 122345567777778888888888888877
Q ss_pred HHhcC-----C-CCCchhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 003872 226 LKEQK-----E-FEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKE 264 (790)
Q Consensus 226 ~~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 264 (790)
..+.. + .+....++..+...|...|++++|...++++.+
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76520 1 122345667777777777777777777777764
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.17 E-value=2.7e-08 Score=102.76 Aligned_cols=274 Identities=13% Similarity=0.015 Sum_probs=183.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHh----hHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCc-cCHHHHHHHH
Q 003872 383 IDGLFRNGRAEAAYTLFCDLKKKGKFVDGI----TFSIVVLQLCREGQIEEALRLVEEMEGR----GFV-VDLVTISSLL 453 (790)
Q Consensus 383 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~l~ 453 (790)
...+...|++++|...+++........+.. .+..+...+...|+++.|...+++.... +.. ....++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556777777777777766653222221 3455556677788888888888776543 111 0123456677
Q ss_pred HHHHhcCCchHHHHHHHHHHhCCCccchHhHHHHHHHHhhccccccccCCCCCCCCCChHHHHHhhcCCccccccccCCC
Q 003872 454 IGFHKYGRWDFTERLMKHIRDGNLVLDVLKWKADVEATMKSRKSKRKDYTPMFPYKGDLSEIMSLIGSTNLETDANLGSG 533 (790)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (790)
..+...|++++|...+++..+....
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~------------------------------------------------------- 125 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINE------------------------------------------------------- 125 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHH-------------------------------------------------------
Confidence 7888999999999998887651000
Q ss_pred CCCCcccccccCCCCCCCCChhHHHHHHhhhccCcchhhHhHHHhHhHhcCCC-CcchHHHHHHHHHHHHHcCChHHHHH
Q 003872 534 EGDAKDEGSQLTNSDEWSSSPYMDKLADQVKSDCHSSQLFSLARGLRVQGKGM-GTFDIDMVNTFLSIFLAKGKLNLACK 612 (790)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~ 612 (790)
..+. .+.....+..+...+...|++++|..
T Consensus 126 -------------------------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (373)
T 1hz4_A 126 -------------------------------------------------QHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 156 (373)
T ss_dssp -------------------------------------------------TTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------------------------------------hccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 0000 01234456678888999999999999
Q ss_pred HHHHHHhCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHH----HHHHHHHhcCCHHHHHH
Q 003872 613 LFEIFTDMGVH----PVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD--IATYN----VVIQGLGKMGRADLAST 682 (790)
Q Consensus 613 ~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~ 682 (790)
.++...+.... ....++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|..
T Consensus 157 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 236 (373)
T 1hz4_A 157 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN 236 (373)
T ss_dssp HHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 99987654221 1234677788889999999999999998875422211 11111 23344778999999999
Q ss_pred HHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCCh-HHHHHHHHHHhccCCHHHHHHHH
Q 003872 683 ILDKLMKQGGGY--LDVVMYNTLINVLGKAGRFDEANMLFEQMRT----SGINPDV-VTFNTLIEVNGKAGRLKEAHYFL 755 (790)
Q Consensus 683 ~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 755 (790)
.+++........ .....+..+..++...|++++|...+++... .|..++. ..+..+..++...|+.++|...+
T Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 237 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp HHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 998876543111 1133567788889999999999999998865 2322232 36677788899999999999999
Q ss_pred HHHHh
Q 003872 756 KMMLD 760 (790)
Q Consensus 756 ~~m~~ 760 (790)
++..+
T Consensus 317 ~~al~ 321 (373)
T 1hz4_A 317 LDALK 321 (373)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.15 E-value=1.7e-09 Score=115.07 Aligned_cols=213 Identities=10% Similarity=-0.062 Sum_probs=150.2
Q ss_pred hHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 003872 216 RSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDL-HTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVW 294 (790)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 294 (790)
++++...++.... ..+.+...+..+...+...|++ ++|.+.|++..+.... +...|..+..+|...|++++|.+.|
T Consensus 84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556666665553 2334677788888888888888 8888888888776322 5677888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCH
Q 003872 295 EELKGSGHEPNEFTHRIIIQGCCKS---------YRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKS--------RKV 357 (790)
Q Consensus 295 ~~~~~~g~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------~~~ 357 (790)
++..+. .|+...+..+...|... |++++|...|++..+.. +.+...|..+...|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 888776 46667777777777777 78888888888877653 22566677777777776 777
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003872 358 MEACQLFEKMVQDGVR--TSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVE 435 (790)
Q Consensus 358 ~~a~~l~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (790)
++|+..|+...+.... -+...|..+...|...|++++|...|++..+.... +...+..+...+...|++++|...+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777765310 36667777777777777777777777777665332 45556666666666777766665443
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.15 E-value=2.1e-10 Score=115.31 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=125.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCC
Q 003872 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEEL-------GTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTAD 190 (790)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (790)
...++..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...++++++........
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4577888999999999999999999999874 233345678999999999999999999999988753111000
Q ss_pred CcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcC-----CC-CCchhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 003872 191 NSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQK-----EF-EFDIYGYNICIHAFGCWGDLHTSLRLFKEMKE 264 (790)
Q Consensus 191 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 264 (790)
. .+.....+..+...|...|++++|...++...+.. +. +.....+..+...+...|++++|..+++++.+
T Consensus 106 ~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 106 D----HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp T----CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred C----ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 12235567778888888888888888888876531 22 22345667777777778888888887777765
Q ss_pred C------CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 265 K------GLVP-DLHTYNSLIQVLCVVGKVKDALIVWEELKG 299 (790)
Q Consensus 265 ~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 299 (790)
. +..| ...++..+...+...|++++|...++++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 1122 234566666777777777777777776654
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.14 E-value=2.4e-09 Score=118.58 Aligned_cols=168 Identities=14% Similarity=0.109 Sum_probs=149.7
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003872 587 GTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNV 666 (790)
Q Consensus 587 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 666 (790)
.|.++.+++.+...|.+.|++++|++.|++.++.. +-+...|..|..+|.+.|++++|+..|++.++.. +-+...|+.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 35678899999999999999999999999998875 4567889999999999999999999999999873 346889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhcc
Q 003872 667 VIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKA 745 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 745 (790)
+..+|...|++++|++.|+++++.. +-+...|+.+..+|...|++++|+..|++..+. .|+ ...|..+..++...
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhc
Confidence 9999999999999999999999874 446789999999999999999999999999985 454 78899999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 003872 746 GRLKEAHYFLKMMLD 760 (790)
Q Consensus 746 g~~~~A~~~~~~m~~ 760 (790)
|++++|.+.+++..+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999998887653
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.11 E-value=3.6e-08 Score=101.85 Aligned_cols=169 Identities=14% Similarity=-0.005 Sum_probs=89.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCC
Q 003872 124 LLLEPCIKSGKIDFAIEILDYMEELGTSLSPN----VYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPG 199 (790)
Q Consensus 124 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (790)
.....+...|++++|...+++........+.. ++..+...+...|+++.|...+++.++....... ....
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~ 92 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV------WHYA 92 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC------HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc------HHHH
Confidence 33445556677777777777766653222222 3455556666777777777777776654321100 0001
Q ss_pred cchHHHHHHHHHhccchHHHHHHHHHHHhc---CCCC--C-chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCC----
Q 003872 200 CVACNELLVALRKSDRRSEFKQVFERLKEQ---KEFE--F-DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVP---- 269 (790)
Q Consensus 200 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---- 269 (790)
..++..+...+...|++++|...++...+. .+.+ | ....+..+...+...|++++|...+++..+.....
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 122344555566666666666666655431 1111 2 23344555566666666666666666655432111
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 270 DLHTYNSLIQVLCVVGKVKDALIVWEELK 298 (790)
Q Consensus 270 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 298 (790)
...++..+...+...|++++|...+++..
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12344455555566666666666665554
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.10 E-value=1.5e-08 Score=104.71 Aligned_cols=246 Identities=9% Similarity=-0.055 Sum_probs=124.4
Q ss_pred cchhhHHHHHHHH--HhcCCcchHHHHHHHhhhC--CCCCCHH--HHHHHHHH--HHhcCChHHHH---------HHHHH
Q 003872 82 HTACTYSHIFRTV--CRAGFLEEVPSLLNSMQED--DVVVDSE--TFKLLLEP--CIKSGKIDFAI---------EILDY 144 (790)
Q Consensus 82 ~~~~~~~~l~~~~--~~~~~~~~a~~l~~~~~~~--~~~~~~~--~~~~li~~--~~~~~~~~~a~---------~~~~~ 144 (790)
++..+-+.+-..+ .+.+++++|..+++++... ....+.. .|-.++.. ..-.+....+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 3444445555555 6788888998888876552 1222332 23333322 11112333333 56666
Q ss_pred HHHhCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHH
Q 003872 145 MEELGTSLSPN----VYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFK 220 (790)
Q Consensus 145 ~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 220 (790)
+.....+.+.. .+......+...|++++|...|+++.+....... .......+..+...|...|++++|.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~a~~~~~lg~~y~~~~~~~~A~ 161 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD------DIEKAEFHFKVAEAYYHMKQTHVSM 161 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC------hHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 54422111111 1223344556778888888888887664221100 1112345566666677777777777
Q ss_pred HHHHHHHhcCCC----CC-chhhHHHHHHHHhccCChHHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHhcCCHHHH
Q 003872 221 QVFERLKEQKEF----EF-DIYGYNICIHAFGCWGDLHTSLRLFKEMKEK----GLV-PDLHTYNSLIQVLCVVGKVKDA 290 (790)
Q Consensus 221 ~~~~~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~ll~~~~~~~~~~~a 290 (790)
..++...+...- .+ ...+++.+...|...|++++|.+.|++..+. +.. ....++..+..+|...|++++|
T Consensus 162 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 162 YHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 666665542111 11 1345556666666666666666666655432 100 0123445555555666666666
Q ss_pred HHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 291 LIVWEELKG-----SGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQY 334 (790)
Q Consensus 291 ~~~~~~~~~-----~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (790)
.+.+++..+ .. +....++..+...+.+.|++++|...+++..+
T Consensus 242 ~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 242 VEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666655543 21 12234445555555555555555555555543
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.08 E-value=1.3e-08 Score=92.93 Aligned_cols=133 Identities=15% Similarity=0.130 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ 669 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 669 (790)
+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~ 118 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGV 118 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHH
Confidence 45677888899999999999999999998775 557788899999999999999999999999887 3457888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 670 GLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
.|...|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+.
T Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 119 ALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999874 557888999999999999999999999998863
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.06 E-value=1.5e-08 Score=96.27 Aligned_cols=175 Identities=13% Similarity=0.027 Sum_probs=147.5
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.++..+......+...|++++|...|+...+...+++...+..+...+...|++++|+..+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346788889999999999999999999999887643777888889999999999999999999999863 3356788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---hHHHHH
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDV-------VMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD---VVTFNT 737 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ 737 (790)
...|...|++++|...+++.++.. +.+. ..|..+...+...|++++|...|+++.+. .|+ ...|..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 999999999999999999999874 3344 55788888899999999999999999874 555 567888
Q ss_pred HHHHHhccCCH---------------------------HHHHHHHHHHHhCCCCCCccc
Q 003872 738 LIEVNGKAGRL---------------------------KEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 738 l~~~~~~~g~~---------------------------~~A~~~~~~m~~~~~~p~~~t 769 (790)
+..++...|+. ++|+..+++..+. .|+...
T Consensus 159 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--~p~~~~ 215 (228)
T 4i17_A 159 LGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--SPNRTE 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCHH
Confidence 88888888887 8899999999864 566543
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.98 E-value=9e-09 Score=101.53 Aligned_cols=172 Identities=17% Similarity=0.174 Sum_probs=137.1
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDM------G-VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKF----- 656 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----- 656 (790)
....++..+...|...|++++|...++...+. + .+....++..+...|...|++++|...+.++.+..
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 35677889999999999999999999988654 1 13345678889999999999999999999987651
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 003872 657 --CPTDIATYNVVIQGLGKMGRADLASTILDKLMKQ-----GGGYL-DVVMYNTLINVLGKAGRFDEANMLFEQMRTS-- 726 (790)
Q Consensus 657 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 726 (790)
.+....++..+...|...|++++|...++++.+. ++..| ...++..+..+|...|++++|..+++++.+.
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1223567888899999999999999999998876 11123 3567888999999999999999999988752
Q ss_pred ----------------------------------------------CCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 727 ----------------------------------------------GINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 727 ----------------------------------------------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
.......++..+..+|.+.|++++|..++++..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 201 EKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111245778889999999999999999998874
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.98 E-value=5.1e-08 Score=92.58 Aligned_cols=99 Identities=11% Similarity=-0.142 Sum_probs=49.4
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLV 162 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (790)
++..+......+...|++++|...|+...+...+++...+..+..++...|++++|++.|++..+... .+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 33444455555555555555555555555544323444444455555555555555555555554331 13344555555
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 003872 163 SLVRKKQLGLAMSILFKLLE 182 (790)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~ 182 (790)
.+...|++++|...+++.++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~ 104 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK 104 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH
Confidence 55555555555555555544
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.97 E-value=2e-08 Score=111.19 Aligned_cols=164 Identities=13% Similarity=0.014 Sum_probs=82.6
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLV 162 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (790)
++.+|+.+..++.+.|++++|+..|+...+... -+..++..+..+|.+.|++++|++.|++..+... .+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 345555555555566666666666655555432 2455555555555556666666666655555432 24455555555
Q ss_pred HHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHH
Q 003872 163 SLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNIC 242 (790)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 242 (790)
+|...|++++|++.|+++++. .+.+...++.+...|.+.|++++|++.|++..+. -+-+...|..+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l------------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L 151 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI------------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNL 151 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhh
Confidence 555555555555555555553 2223344444444444444444444444444431 11123344444
Q ss_pred HHHHhccCChHHHHHHHHHH
Q 003872 243 IHAFGCWGDLHTSLRLFKEM 262 (790)
Q Consensus 243 i~~~~~~g~~~~a~~~~~~m 262 (790)
...+...|++++|.+.+++.
T Consensus 152 ~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 152 AHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHHHHHTTCCTTHHHHHHHH
T ss_pred hhHHHhcccHHHHHHHHHHH
Confidence 44444444444444444433
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=1.3e-07 Score=91.86 Aligned_cols=179 Identities=9% Similarity=-0.025 Sum_probs=140.2
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CCH
Q 003872 587 GTFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPV---NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP--TDI 661 (790)
Q Consensus 587 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~ 661 (790)
.+.++..+-.+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+.... ...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 45577788889999999999999999999998864 233 567888889999999999999999999986321 224
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCCCHHHH---------------HHHHHHHHhcCCHHHHHH
Q 003872 662 ATYNVVIQGLGK--------MGRADLASTILDKLMKQGGGYLDVVMY---------------NTLINVLGKAGRFDEANM 718 (790)
Q Consensus 662 ~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~p~~~~~---------------~~li~~~~~~g~~~~A~~ 718 (790)
..+..+..++.. .|++++|...|+++++..+-.+..... ..+..+|.+.|++++|..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 567777888888 999999999999999875222222211 456788999999999999
Q ss_pred HHHHHHhcCCCC--ChHHHHHHHHHHhcc----------CCHHHHHHHHHHHHhCCCCCCcc
Q 003872 719 LFEQMRTSGINP--DVVTFNTLIEVNGKA----------GRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 719 ~~~~m~~~g~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
.|+++.+..... ....+..+..+|... |++++|+..++++.+. .|+..
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 999998742111 245677888888866 8999999999999865 56654
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.93 E-value=6.1e-08 Score=95.90 Aligned_cols=184 Identities=14% Similarity=0.034 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCC-C---
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDM----GVHP-VNYTYNSMMSSFVKK-GYFNQAWGVLNEMGEKFCPT-D--- 660 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~-~--- 660 (790)
..+++.+...|...|++++|+..|+...+. |-.. -..+++.+...|... |++++|+..|++..+..... +
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 456788889999999999999988877543 2110 135788888999996 99999999999987652111 1
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH-
Q 003872 661 -IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDV-----VMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVV- 733 (790)
Q Consensus 661 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 733 (790)
..+++.+...|...|++++|+..|+++.+...-.+.. ..|..+..++...|++++|...|++..+ +.|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~ 234 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCC
Confidence 3568888999999999999999999999865222221 1567788889999999999999999876 344321
Q ss_pred -----HHHHHHHHHh--ccCCHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHH
Q 003872 734 -----TFNTLIEVNG--KAGRLKEAHYFLKMMLDSGCTPNHVTDTTLDFLGREI 780 (790)
Q Consensus 734 -----~~~~l~~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l~~l~~~~ 780 (790)
.+..++.++. ..+++++|+..++++.. +.|+. -.++..+-+.+
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~--~~~~~~~k~~~ 284 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWK--ITILNKIKESI 284 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHH--HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHH--HHHHHHHHHHh
Confidence 3445566664 45778999988877752 34433 23444444444
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.93 E-value=1.1e-08 Score=100.74 Aligned_cols=234 Identities=12% Similarity=-0.010 Sum_probs=157.7
Q ss_pred hcCCcchHHHHHHHhhh-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh------CC-CCCHHHHHHHH
Q 003872 96 RAGFLEEVPSLLNSMQE-------DDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEEL------GT-SLSPNVYDSVL 161 (790)
Q Consensus 96 ~~~~~~~a~~l~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll 161 (790)
..|+++.|+.+++...+ .+.+....++..+...|...|++++|++.|+++... +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34566666666665554 222335678888999999999999999999998865 22 22345789999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhc------CCCCCc
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQ------KEFEFD 235 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~ 235 (790)
..+...|++++|...+.++++......... .+.....+..+...|...|++++|...++...+. ...+..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKF----HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCC----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 999999999999999999987532110000 1234567888999999999999999999998763 112224
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHC-------CCCCCH-hHHHHHHHHHHhcCC------HHHHHHHHHHHHhCC
Q 003872 236 IYGYNICIHAFGCWGDLHTSLRLFKEMKEK-------GLVPDL-HTYNSLIQVLCVVGK------VKDALIVWEELKGSG 301 (790)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~-~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~g 301 (790)
..++..+...|...|++++|..++++..+. ...+.. ..+..+...+...+. +..+...++.....
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 247 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD- 247 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-
Confidence 678889999999999999999999998763 122222 233333333333222 22222222222111
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 302 HEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQY 334 (790)
Q Consensus 302 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (790)
.+....++..+...|...|++++|..++++..+
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122345788888999999999999999998765
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.91 E-value=1e-07 Score=81.45 Aligned_cols=128 Identities=18% Similarity=0.188 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 629 YNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLG 708 (790)
Q Consensus 629 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~ 708 (790)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.... +.+...+..+..++.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHH
Confidence 4445555555566666666666555442 2244555555556666666666666666665542 334555556666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 709 KAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
..|++++|.++++++.... +.+...+..+...+.+.|++++|..+++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666665532 22355556666666666666666666666654
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=1.2e-07 Score=81.04 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGL 671 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 671 (790)
..+..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 357788999999999999999999998765 4577888889999999999999999999998874 44678888999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 672 GKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 672 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
...|++++|.++++++.... +.+...+..+..++...|++++|...++++...
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999999999874 456788899999999999999999999999874
No 91
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.89 E-value=2.1e-06 Score=91.00 Aligned_cols=78 Identities=10% Similarity=0.096 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 606 KLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILD 685 (790)
Q Consensus 606 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 685 (790)
+.+.|..+|+...+.. +-++..|...++...+.|+.+.|..+|+.+.+ ....|...+.--...|+.+.+.++++
T Consensus 335 d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5788888888876653 23345566677777788888888888888732 46778888777777788888888888
Q ss_pred HHHH
Q 003872 686 KLMK 689 (790)
Q Consensus 686 ~~~~ 689 (790)
++..
T Consensus 409 ~~~~ 412 (493)
T 2uy1_A 409 QKMD 412 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.86 E-value=3.4e-06 Score=89.45 Aligned_cols=222 Identities=8% Similarity=-0.027 Sum_probs=120.8
Q ss_pred hcc-chHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-HHH
Q 003872 212 KSD-RRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGK-VKD 289 (790)
Q Consensus 212 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~ 289 (790)
+.| +++.|..+|+.+.... |. |+++.+..+|+..... .|+...|...+....+.++ .+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~~---P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY---MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp ------CCHHHHHHHHHHHH---HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----C
T ss_pred HcCcchHHHHHHHHHHHHHC---CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHH
Confidence 345 3777777777777531 11 8899999999998875 5788888888887777663 455
Q ss_pred HHHHHHHHHhC-CC-CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003872 290 ALIVWEELKGS-GH-EPNEFTHRIIIQGCC----KSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQL 363 (790)
Q Consensus 290 a~~~~~~~~~~-g~-~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l 363 (790)
...+|+..... |. ..+...|...+..+. ..++.+.+.++|++........-...|..... +....+...+..+
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKI 145 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHH
Confidence 67777776543 43 346677777776654 23567788888888886311111112222211 1111122222222
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-------CHHHHHHHHHH
Q 003872 364 FEKMVQDGVRTSCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREG-------QIEEALRLVEE 436 (790)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-------~~~~a~~~~~~ 436 (790)
+.+.. +.+..|..+++.+...-...+...|...+..-...+ ..+.+..+|++
T Consensus 146 ~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 146 VGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence 22211 122223333332221100012234444333322211 13456677887
Q ss_pred HHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 003872 437 MEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRDG 475 (790)
Q Consensus 437 m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (790)
++... +.+...|...+..+...|+.+.|..++++....
T Consensus 205 al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 205 ILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 77653 335777777777778888888888888888775
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.86 E-value=1.1e-07 Score=88.55 Aligned_cols=175 Identities=13% Similarity=0.070 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHH----------------HHHHHHhcCCHHHHHHHHHHHhh
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNS----------------MMSSFVKKGYFNQAWGVLNEMGE 654 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~ 654 (790)
+..+......+...|++++|...|+...+.. +-+...|.. +...|.+.|++++|+..|++.++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344456677889999999999999998764 334556666 88899999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCh
Q 003872 655 KFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGR--FDEANMLFEQMRTSGINPDV 732 (790)
Q Consensus 655 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 732 (790)
.. +.+...+..+...|...|++++|...|+++++.. +-+...|..+..+|...|+ .+.+...+..... ..|..
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 157 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQ 157 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchh
Confidence 74 4478899999999999999999999999999974 4567888888888876654 3445555555542 23333
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhHH
Q 003872 733 VTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTL 773 (790)
Q Consensus 733 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 773 (790)
..+..+..++...|++++|+..+++..+ +.|+......|
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 3455566677788999999999999985 47775444444
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.84 E-value=1.7e-06 Score=83.42 Aligned_cols=169 Identities=9% Similarity=-0.044 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-----CHHHHH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGV-HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT-----DIATYN 665 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~ 665 (790)
..+..+..++...|++++|++++...+..|. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+..
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHH
Confidence 3344667777778888888888887766552 135666777778888888888888888888775 45 244444
Q ss_pred HHHHHH--HhcC--CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC----CCCh
Q 003872 666 VVIQGL--GKMG--RADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS-----GI----NPDV 732 (790)
Q Consensus 666 ~li~~~--~~~g--~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~----~p~~ 732 (790)
.|..++ ...| +++.|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+. +- +-+.
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 555442 2223 7888888888876543 55333344444777888888888888866542 00 2245
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 003872 733 VTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 733 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 769 (790)
.++..+|......|+ +|.++++++.+. .|++.-
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~ 288 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAF 288 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHH
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChH
Confidence 566566656666676 788888888754 566654
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.84 E-value=3.4e-07 Score=88.34 Aligned_cols=130 Identities=16% Similarity=0.144 Sum_probs=63.3
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHH
Q 003872 235 DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGL-VPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEP-----NEFT 308 (790)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-----~~~~ 308 (790)
+..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~ 176 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEM 176 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHH
Confidence 333344555555555666666666655544432 113444455555566666666666666655543 33 1333
Q ss_pred HHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 309 HRIIIQG--CCKSY--RMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMV 368 (790)
Q Consensus 309 ~~~li~~--~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~ 368 (790)
...+..+ ....| +.++|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334333 12222 555566666665443 2332222333335555566666655555443
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.78 E-value=2.6e-07 Score=91.28 Aligned_cols=175 Identities=9% Similarity=-0.130 Sum_probs=118.7
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-CC----
Q 003872 84 ACTYSHIFRTVCRAGFLEEVPSLLNSMQED----DVVV-DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTS-LS---- 153 (790)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~---- 153 (790)
...|.....++...|++++|...+...... +.++ ...+|..+...|.+.|++++|+..|++....... .+
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 116 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 345677777888999999999999887663 2221 2568899999999999999999999988775211 11
Q ss_pred HHHHHHHHHHHHhc-CChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCC
Q 003872 154 PNVYDSVLVSLVRK-KQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEF 232 (790)
Q Consensus 154 ~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (790)
..++..+...|... |++++|+..|++.++....... ......+++.+...+.+.|++++|+..|+...+...-
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 35788999999996 9999999999998875321100 0000234566666777777777777777776652111
Q ss_pred CCch-----hhHHHHHHHHhccCChHHHHHHHHHHHH
Q 003872 233 EFDI-----YGYNICIHAFGCWGDLHTSLRLFKEMKE 264 (790)
Q Consensus 233 ~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 264 (790)
.+.. ..|..+..++...|++++|...|++..+
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1111 1345555666666777777766666654
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.77 E-value=5.5e-07 Score=87.44 Aligned_cols=187 Identities=5% Similarity=-0.037 Sum_probs=128.0
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC--CCHHH
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVD---SETFKLLLEPCIKSGKIDFAIEILDYMEELGTS--LSPNV 156 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 156 (790)
.++..+-.....+.+.|++++|...|+.+...... + ..++..+..+|.+.|++++|+..|+++.+..+. ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45667777888899999999999999999987532 3 678889999999999999999999999997531 23457
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHh
Q 003872 157 YDSVLVSLVR--------KKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKE 228 (790)
Q Consensus 157 ~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (790)
+..+..++.. .|++++|...|+++++.. +.+......+... ..+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------------p~~~~~~~a~~~~--------------~~~~~ 145 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY------------PNHELVDDATQKI--------------RELRA 145 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC------------TTCTTHHHHHHHH--------------HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC------------cCchhHHHHHHHH--------------HHHHH
Confidence 8888888988 999999999999999863 2222222221111 01100
Q ss_pred cCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhc----------CCHHHHHHHHHH
Q 003872 229 QKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVP--DLHTYNSLIQVLCVV----------GKVKDALIVWEE 296 (790)
Q Consensus 229 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~----------~~~~~a~~~~~~ 296 (790)
. -...+..+...|.+.|++++|...|+++.+..... ....+..+..+|... |++++|...|++
T Consensus 146 ~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 146 K-----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp H-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 0 01124455666677777777777777776652211 123455555666544 667777777777
Q ss_pred HHhC
Q 003872 297 LKGS 300 (790)
Q Consensus 297 ~~~~ 300 (790)
+.+.
T Consensus 221 ~~~~ 224 (261)
T 3qky_A 221 LLQI 224 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.74 E-value=8.3e-07 Score=83.80 Aligned_cols=175 Identities=11% Similarity=0.001 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH--HHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVH-P-VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDI--ATYN 665 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~ 665 (790)
++..+..+...+...|++++|...|+.+.+.... | ....+..+..+|.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455667788899999999999999999876311 1 1356778889999999999999999999986432211 2343
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHhCCCCCCHHH---------------HHHHHHHHHhcCC
Q 003872 666 VVIQGLGK------------------MGRADLASTILDKLMKQGGGYLDVVM---------------YNTLINVLGKAGR 712 (790)
Q Consensus 666 ~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~p~~~~---------------~~~li~~~~~~g~ 712 (790)
.+..++.. .|++++|...|+++++..+-.+.... ...+...|.+.|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 44444433 67899999999999987422222211 0245567889999
Q ss_pred HHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 713 FDEANMLFEQMRTSGINPD----VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 713 ~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
+++|...|+++.+. .|+ ...+..+..++.+.|++++|++.++.+... .|+.+
T Consensus 163 ~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~--~~~~~ 218 (225)
T 2yhc_A 163 WVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN--SSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC--CSCCC
T ss_pred HHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCch
Confidence 99999999999985 343 256888999999999999999999999876 45443
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.73 E-value=1.2e-07 Score=85.65 Aligned_cols=162 Identities=13% Similarity=0.096 Sum_probs=127.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HH
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG-LG 672 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~ 672 (790)
+......+...|++++|...|+...+.. +.+...+..+...+...|++++|+..++++.+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4567778899999999999999987664 5567889999999999999999999999988764 355444332222 22
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccCCHHHH
Q 003872 673 KMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAGRLKEA 751 (790)
Q Consensus 673 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 751 (790)
..+....|...++++++.. +-+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2233345789999998874 4468889999999999999999999999999853322 356888999999999999999
Q ss_pred HHHHHHHHh
Q 003872 752 HYFLKMMLD 760 (790)
Q Consensus 752 ~~~~~~m~~ 760 (790)
...+++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.72 E-value=5.6e-07 Score=83.72 Aligned_cols=160 Identities=11% Similarity=-0.020 Sum_probs=81.8
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 003872 89 HIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKL----------------LLEPCIKSGKIDFAIEILDYMEELGTSL 152 (790)
Q Consensus 89 ~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~~~~~~ 152 (790)
.....+...|++++|...|+...+.++. +...+.. +...|.+.|++++|+..|++..+.. +.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 86 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN 86 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 3444555667777777777766665321 3344444 5666666666666666666666654 23
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccc--hHHHHHHHHHHHhcC
Q 003872 153 SPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDR--RSEFKQVFERLKEQK 230 (790)
Q Consensus 153 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~ 230 (790)
+...+..+..++...|++++|...|+++++. .+.+...+..+...|...|. ...+...+.....
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-- 152 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQL------------EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-- 152 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--
Confidence 5556666666666666666666666666654 33344555555555443332 2223333333221
Q ss_pred CCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHC
Q 003872 231 EFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK 265 (790)
Q Consensus 231 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 265 (790)
..|....+.....++...|++++|...|++..+.
T Consensus 153 -~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 153 -PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred -CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1122222222333344445555555555555543
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.69 E-value=2.4e-07 Score=83.58 Aligned_cols=164 Identities=9% Similarity=0.018 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHH-
Q 003872 85 CTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVS- 163 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~- 163 (790)
..+......+.+.|++++|...++...+.. +-+...+..+...+...|++++|+..|+++..... ++..+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 345556677778888888888888777654 33667778888888888888888888887766542 44433322211
Q ss_pred HHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHH
Q 003872 164 LVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICI 243 (790)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 243 (790)
+...+....|...+++.++. .+.+...+..+...+...|++++|...|+.+.+...-..+...+..+.
T Consensus 84 ~~~~~~~~~a~~~~~~al~~------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~ 151 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAA------------NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFM 151 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHH------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHH
T ss_pred HHhhcccchHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHH
Confidence 12222333456666666654 233455555566666666666666666666554211111234555555
Q ss_pred HHHhccCChHHHHHHHHHHH
Q 003872 244 HAFGCWGDLHTSLRLFKEMK 263 (790)
Q Consensus 244 ~~~~~~g~~~~a~~~~~~m~ 263 (790)
..+...|+.++|...|++..
T Consensus 152 ~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 152 DILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHH
Confidence 66666666666666555443
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.67 E-value=3.5e-06 Score=79.45 Aligned_cols=202 Identities=10% Similarity=-0.004 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhhCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCH--HHHHHH
Q 003872 85 CTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVV-V-DSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSP--NVYDSV 160 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 160 (790)
..+..+...+.+.|++++|+..|+.+...... + ....+..+..+|.+.|++++|+..|+++.+..+.... .++..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 33444445555556666666666655553211 1 1244555555555666666666666665554321110 122233
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHH
Q 003872 161 LVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYN 240 (790)
Q Consensus 161 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (790)
..++...+.. .+. .+..+...+...|++++|...|+.+.+.. |-+...+.
T Consensus 85 g~~~~~~~~~-----~~~-----------------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~ 134 (225)
T 2yhc_A 85 GLTNMALDDS-----ALQ-----------------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTD 134 (225)
T ss_dssp HHHHHHHHC------------------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHH
T ss_pred HHHHHhhhhh-----hhh-----------------------hhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHH
Confidence 3333222210 000 11112223344678888888888887632 22222222
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHH
Q 003872 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPN-E---FTHRIIIQGC 316 (790)
Q Consensus 241 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~---~~~~~li~~~ 316 (790)
...... .+...+. .....+...|.+.|++++|...|+++.+. .|+ . ..+..+..+|
T Consensus 135 a~~~l~----------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~ 194 (225)
T 2yhc_A 135 ATKRLV----------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAY 194 (225)
T ss_dssp HHHHHH----------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHH
T ss_pred HHHHHH----------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHH
Confidence 211100 0001110 11134566778888899999888888765 233 2 4577778888
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 003872 317 CKSYRMDDAMKIFSEMQYNG 336 (790)
Q Consensus 317 ~~~~~~~~a~~~~~~m~~~~ 336 (790)
.+.|+.++|.+.++.+...+
T Consensus 195 ~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 195 RQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHCC
T ss_pred HHcCCcHHHHHHHHHHHhhC
Confidence 88899999998888887764
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.66 E-value=1.5e-07 Score=82.22 Aligned_cols=144 Identities=9% Similarity=-0.062 Sum_probs=89.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 003872 598 LSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRA 677 (790)
Q Consensus 598 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 677 (790)
...+...|++++|+..+....... +.+...+-.+...|.+.|++++|+..|++.++.. +-+...|..+...|...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 344445566777777776665442 2234455566677777777777777777777653 33566777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCC-ChHHHHHHHHHHhccCC
Q 003872 678 DLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANML-FEQMRTSGINP-DVVTFNTLIEVNGKAGR 747 (790)
Q Consensus 678 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 747 (790)
++|...|+++++.. +-+...|..+..+|.+.|++++|.+. +++..+. .| +..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 77777777777653 33566677777777777776655543 4666653 33 34555555555555553
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.65 E-value=4.7e-07 Score=89.08 Aligned_cols=167 Identities=11% Similarity=-0.014 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccc
Q 003872 116 VVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVE 195 (790)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 195 (790)
+.+...+..+...+.+.|++++|+..|++..+..+ .+...+..+...+.+.|++++|...++++...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~------------ 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ------------ 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG------------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh------------
Confidence 33556777888888899999999999999888753 46778888999999999999999999887553
Q ss_pred cCCCcch-HHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCC-CHhH
Q 003872 196 SLPGCVA-CNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVP-DLHT 273 (790)
Q Consensus 196 ~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~ 273 (790)
.|+... .......+...++.++|...+++.... -+.+...+..+...+...|++++|...|+++.+..... +...
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 233322 222333466778888888888888763 34467788889999999999999999999998874321 2567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 274 YNSLIQVLCVVGKVKDALIVWEELK 298 (790)
Q Consensus 274 ~~~ll~~~~~~~~~~~a~~~~~~~~ 298 (790)
+..+...+...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 8888899999999988888887754
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.64 E-value=8.3e-07 Score=87.33 Aligned_cols=167 Identities=14% Similarity=0.034 Sum_probs=136.9
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.+...+..+...+...|++++|...|+...+.. +-+...+..+...+...|++++|...++++.... |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3466677788899999999999999999998775 5577888899999999999999999999988763 454433332
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHhcc
Q 003872 668 -IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGIN-PDVVTFNTLIEVNGKA 745 (790)
Q Consensus 668 -i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~ 745 (790)
...+...++.+.|...+++..... +.+...+..+..++...|++++|...|.++.+.... .+...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 233667788888999999999874 557888999999999999999999999999985322 1266889999999999
Q ss_pred CCHHHHHHHHHHHH
Q 003872 746 GRLKEAHYFLKMML 759 (790)
Q Consensus 746 g~~~~A~~~~~~m~ 759 (790)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99999998888765
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.64 E-value=1.6e-06 Score=86.30 Aligned_cols=158 Identities=11% Similarity=0.009 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-C---
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDM----GVHPV--NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPT-D--- 660 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~--- 660 (790)
...++.+...|...|++++|+..|++..+. | .+. ..++..+...|.. |++++|+..|++..+..... +
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~ 153 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ 153 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence 456788889999999999999999876543 2 122 3567788888988 99999999999887642111 1
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---
Q 003872 661 -IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDV--- 732 (790)
Q Consensus 661 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--- 732 (790)
..+++.+...|...|++++|+..|+++++...-.++ ...+..+..++...|++++|...|++.. . .|+.
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~ 230 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGS 230 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCC
Confidence 457888899999999999999999998875311112 2366677777888899999999999987 3 3431
Q ss_pred ---HHHHHHHHHHhccCCHHHHHHH
Q 003872 733 ---VTFNTLIEVNGKAGRLKEAHYF 754 (790)
Q Consensus 733 ---~~~~~l~~~~~~~g~~~~A~~~ 754 (790)
.....++.++ ..|+.+.+.++
T Consensus 231 ~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 231 EDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 2344555555 56787666653
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.61 E-value=8.2e-07 Score=99.00 Aligned_cols=153 Identities=10% Similarity=-0.004 Sum_probs=128.5
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.+...+..+...|...|++++|...|+...+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~l 507 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLAL 507 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHH
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 3355677888899999999999999999998775 5577889999999999999999999999999874 3367888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccC
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAG 746 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 746 (790)
..+|.+.|++++ .+.|+++++.. +-+...|..+..++.+.|++++|...|+++.+. .|+ ...|..+..++...|
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 999999999999 99999999874 457788999999999999999999999998864 565 567778888887766
Q ss_pred C
Q 003872 747 R 747 (790)
Q Consensus 747 ~ 747 (790)
+
T Consensus 583 ~ 583 (681)
T 2pzi_A 583 S 583 (681)
T ss_dssp -
T ss_pred C
Confidence 5
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.60 E-value=7.1e-07 Score=99.48 Aligned_cols=170 Identities=10% Similarity=-0.080 Sum_probs=92.8
Q ss_pred HhcCChHHHHHHHHHHH--------HhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcc
Q 003872 130 IKSGKIDFAIEILDYME--------ELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCV 201 (790)
Q Consensus 130 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (790)
...|++++|++.|++.. +.. +.+...+..+..++...|++++|+..|+++++. .+.+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------~p~~~~ 468 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER------------VGWRWR 468 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------HCCCHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc------------CcchHH
Confidence 44566666666666555 221 234455555566666666666666666666554 233445
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003872 202 ACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVL 281 (790)
Q Consensus 202 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 281 (790)
.|..+...+...|++++|++.|++..+. -+-+...|..+..++.+.|++++ .+.|++..+.... +...|..+..++
T Consensus 469 a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~ 544 (681)
T 2pzi_A 469 LVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARAR 544 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHH
Confidence 5555556666666666666666665542 12234555566666666666666 6666666554322 445556666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPN-EFTHRIIIQGCCK 318 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~ 318 (790)
.+.|++++|.+.|++..+. .|+ ...+..+..++..
T Consensus 545 ~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 545 SAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC-
T ss_pred HHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHc
Confidence 6666666666666665544 232 3444444444433
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.59 E-value=1.2e-06 Score=96.07 Aligned_cols=150 Identities=8% Similarity=-0.078 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003872 605 GKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTIL 684 (790)
Q Consensus 605 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 684 (790)
|++++|...|++..+.. +.+...|..+...|...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444444444444332 2233444444444555555555555555544432 223444444444555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc---CCHHHHHHHHHHHH
Q 003872 685 DKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKA---GRLKEAHYFLKMML 759 (790)
Q Consensus 685 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~ 759 (790)
+++.+.. +.+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++... |++++|.+.+++..
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 5544442 2234444444445555555555555555444421 11234444444444444 55555555555444
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.59 E-value=7.8e-06 Score=76.10 Aligned_cols=176 Identities=13% Similarity=0.049 Sum_probs=97.3
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 003872 255 SLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSY----RMDDAMKIFS 330 (790)
Q Consensus 255 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~----~~~~a~~~~~ 330 (790)
|++.|++..+.| ++..+..+...|...+++++|.+.|++..+.| +...+..+-..|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555555542 45555555555555666666666666655543 34444445555544 4 5666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 003872 331 EMQYNGLIPDTVVYNSLLNGMFK----SRKVMEACQLFEKMVQDGVR-TSCWTHNILIDGLFR----NGRAEAAYTLFCD 401 (790)
Q Consensus 331 ~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~l~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~ 401 (790)
+..+.| +...+..|...|.. .++.++|...|+...+.|.. .+...+..|...|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665543 44455555555554 56666666666666655411 014555566666665 5566666666666
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHc-C-----CHHHHHHHHHHHHhCCC
Q 003872 402 LKKKGKFVDGITFSIVVLQLCRE-G-----QIEEALRLVEEMEGRGF 442 (790)
Q Consensus 402 ~~~~~~~~~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~m~~~~~ 442 (790)
..+.+ .+...+..|...|... | ++++|..+|+...+.|.
T Consensus 155 A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 66551 1333444555555432 2 66666666666666553
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.58 E-value=5.7e-06 Score=77.04 Aligned_cols=162 Identities=12% Similarity=-0.022 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHHhhcCCCCCHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKG----YFNQAWGVLNEMGEKFCPTDIATYN 665 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~ 665 (790)
++..+..+...|...+++++|...|+...+.| ++..+..|...|.. + ++++|+..|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 67888899999999999999999999998876 56777778888887 6 8999999999998864 677888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChHH
Q 003872 666 VVIQGLGK----MGRADLASTILDKLMKQGGGYLD---VVMYNTLINVLGK----AGRFDEANMLFEQMRTSGINPDVVT 734 (790)
Q Consensus 666 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 734 (790)
.|...|.. .+++++|..+|++..+.+ +. ...+..|...|.. .+++++|..+|++..+. ..+...
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a 164 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDS---ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYA 164 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSST---TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcC---CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHH
Confidence 88888877 889999999999998765 32 7788888888888 78999999999999885 235556
Q ss_pred HHHHHHHHhcc-C-----CHHHHHHHHHHHHhCCC
Q 003872 735 FNTLIEVNGKA-G-----RLKEAHYFLKMMLDSGC 763 (790)
Q Consensus 735 ~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 763 (790)
+..|...|... | ++++|++++++..+.|.
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77788877653 3 89999999999988774
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.58 E-value=5.6e-05 Score=73.75 Aligned_cols=170 Identities=8% Similarity=-0.062 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHH--
Q 003872 135 IDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKK--QLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVAL-- 210 (790)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-- 210 (790)
.++|+++++.+...++ -...+|+.--..+...+ ++++++..++.++.. .+.+..+|+.-...+
T Consensus 49 s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~------------nPk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 49 SERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD------------NEKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH------------CTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH------------CcccHHHHHHHHHHHHH
Confidence 3466666666666542 24445666666666666 677777777777664 344445555433333
Q ss_pred --Hhc---cchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChH--HHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 003872 211 --RKS---DRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLH--TSLRLFKEMKEKGLVPDLHTYNSLIQVLCV 283 (790)
Q Consensus 211 --~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 283 (790)
... +++++++.+++.+.+. -+-+..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.....+..
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHS
T ss_pred HHHhccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 223 4566666666666652 2334555555555555555555 666666666655433 45555544444444
Q ss_pred cCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003872 284 VGK------VKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYR 321 (790)
Q Consensus 284 ~~~------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 321 (790)
.+. ++++++.++++.... +-|...|+.+-..+.+.|+
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred ccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 443 444444444444332 3344444444444444333
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.57 E-value=4.2e-05 Score=74.68 Aligned_cols=227 Identities=6% Similarity=-0.027 Sum_probs=176.5
Q ss_pred HHHHHhcCCc-chHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHhCCCCCHHHHHHHHHHH---
Q 003872 91 FRTVCRAGFL-EEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSG--KIDFAIEILDYMEELGTSLSPNVYDSVLVSL--- 164 (790)
Q Consensus 91 ~~~~~~~~~~-~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--- 164 (790)
+++..+.|.+ ++|+.+.+.++..++. ...+|+.--..+...+ ++++++++++.+...++ -+..+|+.--..+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHH
Confidence 3344455555 5899999999987643 6777888888888888 99999999999998764 3556666666555
Q ss_pred -Hhc---CChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchH--HHHHHHHHHHhcCCCCCchhh
Q 003872 165 -VRK---KQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRS--EFKQVFERLKEQKEFEFDIYG 238 (790)
Q Consensus 165 -~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~ 238 (790)
... +++++++..++++++. .+.+..+|+.-.-.+.+.|.++ ++++.++.+.+. -+-|...
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~------------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sA 182 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSS------------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSA 182 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHhccccCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHH
Confidence 555 7899999999999987 6778899999888888889888 999999999974 2346777
Q ss_pred HHHHHHHHhccCC------hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH-HHHHHHHHHHHhCC--CCCCHHHH
Q 003872 239 YNICIHAFGCWGD------LHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKV-KDALIVWEELKGSG--HEPNEFTH 309 (790)
Q Consensus 239 ~~~li~~~~~~g~------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g--~~~~~~~~ 309 (790)
|+.-...+...+. ++++++.++++....+. |...|+.+...+.+.|+. +.+..+..++.+.+ -+.+...+
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 8777777777676 89999999999887654 888898888888888874 44555666655432 14567788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 310 RIIIQGCCKSYRMDDAMKIFSEMQY 334 (790)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~m~~ 334 (790)
..+..+|.+.|+.++|.++++.+.+
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Confidence 8888888888999999999998876
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.50 E-value=7e-06 Score=76.61 Aligned_cols=130 Identities=11% Similarity=-0.038 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGL 671 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 671 (790)
..+..+...+...|++++|...|+... .|+...|..+...|...|++++|+..+++..+.. +.+...+..+...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345567788889999999999998774 5688899999999999999999999999998864 45778889999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 672 GKMGRADLASTILDKLMKQGGGYL--------------DVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 672 ~~~g~~~~A~~~~~~~~~~~~~~p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
...|++++|.+.|+++.+..+..+ ....+..+..+|...|++++|...|++..+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 999999999999999988641111 2367888888999999999999999999874
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.49 E-value=9.1e-06 Score=80.26 Aligned_cols=169 Identities=8% Similarity=-0.082 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---CCC--
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVN-----YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFC---PTD-- 660 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~-- 660 (790)
...+...+..+...|++++|.+.+....+....... ..+..+...+...|++++|+..+++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 344556788889999999999999888765422111 2234455667888999999999999876421 122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC
Q 003872 661 IATYNVVIQGLGKMGRADLASTILDKLM---KQGGGYL--DVVMYNTLINVLGKAGRFDEANMLFEQMRTS----GINPD 731 (790)
Q Consensus 661 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~ 731 (790)
..+++.+...|...|++++|...++++. +..+..+ ...++..+..+|...|++++|...+++..+. +....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4588899999999999999999999988 3321111 1258888999999999999999999988752 11111
Q ss_pred -hHHHHHHHHHHhccCCHHHH-HHHHHHHH
Q 003872 732 -VVTFNTLIEVNGKAGRLKEA-HYFLKMML 759 (790)
Q Consensus 732 -~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 759 (790)
..+|..+..+|.+.|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 67788999999999999999 77788765
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.48 E-value=6.4e-06 Score=76.83 Aligned_cols=132 Identities=8% Similarity=-0.055 Sum_probs=112.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003872 628 TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVL 707 (790)
Q Consensus 628 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~ 707 (790)
.+..+...+...|++++|+..|++.. .|+...+..+...|...|++++|...++++++.. +.+...|..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 34556778889999999999999874 5688899999999999999999999999999874 55788899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCC--------------CC-ChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 708 GKAGRFDEANMLFEQMRTSGI--------------NP-DVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 708 ~~~g~~~~A~~~~~~m~~~g~--------------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
...|++++|...|++..+... .| ....+..+..++.+.|++++|.+.+++..+. .|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 999999999999999997421 11 1378889999999999999999999999865 4543
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.48 E-value=5.1e-06 Score=90.93 Aligned_cols=83 Identities=8% Similarity=-0.077 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHH
Q 003872 390 GRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLM 469 (790)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 469 (790)
|++++|+..+++..+.... +...+..+...+...|++++|...+++..+.... +...+..+..+|...|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5566666666666554222 4455666666666666666666666666654322 4555666666666666666666666
Q ss_pred HHHHh
Q 003872 470 KHIRD 474 (790)
Q Consensus 470 ~~~~~ 474 (790)
++..+
T Consensus 81 ~~al~ 85 (568)
T 2vsy_A 81 QQASD 85 (568)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65544
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.47 E-value=4.5e-06 Score=74.15 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGL 671 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 671 (790)
..+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344555555555666666666665555443 2344455555555555555555555555555442 22344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHh
Q 003872 672 GKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 672 ~~~g~~~~A~~~~~~~~~~ 690 (790)
...|++++|...++++.+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 5555555555555555544
No 119
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.47 E-value=1.2e-06 Score=76.41 Aligned_cols=142 Identities=8% Similarity=-0.117 Sum_probs=84.3
Q ss_pred HHHHhccchHHHHHHHHHHHhcCCCCC-chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 003872 208 VALRKSDRRSEFKQVFERLKEQKEFEF-DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGK 286 (790)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 286 (790)
..+...|++++|+..+..... ..| +...+-.+...|.+.|++++|.+.|++..+.... +..+|..+..+|...|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 344556667777777666543 222 2445556677777777777777777777665322 56667777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003872 287 VKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKI-FSEMQYNGLIPDTVVYNSLLNGMFKSR 355 (790)
Q Consensus 287 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~~~~p~~~~~~~li~~~~~~~ 355 (790)
+++|...|++..+.. +-+...+..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 777777777766653 34466666666777777776554443 45555432 123444554444444444
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.46 E-value=5.7e-06 Score=69.35 Aligned_cols=99 Identities=12% Similarity=0.000 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ 669 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 669 (790)
....+...+..|.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 34445555555555555555555555555443 3344555555555555555555555555555442 223444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 003872 670 GLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~ 690 (790)
+|...|++++|.+.|+++++.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 555555555555555555543
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.42 E-value=1e-05 Score=71.83 Aligned_cols=130 Identities=11% Similarity=-0.055 Sum_probs=107.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003872 626 NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLIN 705 (790)
Q Consensus 626 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~ 705 (790)
...+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...|..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 3556778888999999999999999998863 4478889999999999999999999999999874 457888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChHHHH--HHHHHHhccCCHHHHHHHHHHHH
Q 003872 706 VLGKAGRFDEANMLFEQMRTSGINPDVVTFN--TLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 706 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
++...|++++|...|+++.+.. +.+...+. .++..+.+.|++++|++.+++..
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999998852 22444553 34444778899999999998765
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.41 E-value=7.6e-06 Score=81.40 Aligned_cols=173 Identities=8% Similarity=-0.004 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---C--C
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDM----GVH-PVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP---T--D 660 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~--~ 660 (790)
...|...+..|...|++++|...|....+. +-. .-..+|+.+...|...|++++|+..|++..+.... + -
T Consensus 36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 446777788899999999999999877543 211 11357888889999999999999999987654111 1 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-
Q 003872 661 IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRTS----GINPD- 731 (790)
Q Consensus 661 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~- 731 (790)
..+++.+...|.. |++++|+..+++.++......+ ..+++.+..+|...|++++|...|++.... +..+.
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 3567788888988 9999999999998765311111 467888999999999999999999998862 22122
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 732 VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 732 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
...+..++.++...|++++|+..+++.. ..|+.
T Consensus 195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~p~~ 227 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRADYVAAQKCVRESY---SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh---CCCCC
Confidence 2366777788888899999999999998 35544
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.40 E-value=7.9e-06 Score=70.73 Aligned_cols=99 Identities=13% Similarity=0.018 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
.++..+..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|+..|+++.+.. +.+...|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 344444444444455555555555554444443 2334444444444444444444444444444432 12333444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 003872 669 QGLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~ 689 (790)
.+|...|++++|...|+++++
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444444
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.40 E-value=2e-05 Score=77.80 Aligned_cols=167 Identities=11% Similarity=-0.051 Sum_probs=126.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC----HHH
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDMGV-HPVN----YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP-TD----IAT 663 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~ 663 (790)
+...+..+...|++++|..+++...+... .|+. ..+..+...+...|++++|+..++++.+.... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 44457788999999999999999876431 2221 13334666777888999999999999874222 22 336
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCC-hH
Q 003872 664 YNVVIQGLGKMGRADLASTILDKLMKQG----GGYLD-VVMYNTLINVLGKAGRFDEANMLFEQMRT----SGINPD-VV 733 (790)
Q Consensus 664 ~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~ 733 (790)
++.+...|...|++++|...++++.+.. +..+. ..+|..+..+|.+.|++++|...+++..+ .+..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8999999999999999999999988521 11122 34778899999999999999999998875 222222 67
Q ss_pred HHHHHHHHHhccCC-HHHHHHHHHHHHh
Q 003872 734 TFNTLIEVNGKAGR-LKEAHYFLKMMLD 760 (790)
Q Consensus 734 ~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 760 (790)
+|..+..++.+.|+ +++|.+.+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88999999999995 6999999998763
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.39 E-value=1.4e-05 Score=66.65 Aligned_cols=95 Identities=18% Similarity=0.212 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003872 628 TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVL 707 (790)
Q Consensus 628 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~ 707 (790)
.|..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|..+++++.+.. +.+..++..+..+|
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHH
Confidence 33444444444444444444444444431 2234444444455555555555555555554442 23444445555555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 003872 708 GKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 708 ~~~g~~~~A~~~~~~m~~ 725 (790)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555544
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.36 E-value=5e-06 Score=71.99 Aligned_cols=96 Identities=11% Similarity=-0.102 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINV 706 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~ 706 (790)
..+..+...+.+.|++++|+..|+++.+.. +.+...|..+..+|...|++++|+..|+++++.. +-+...|..+..+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHH
Confidence 344455555566666666666666665542 2345555555566666666666666666665553 2234455555556
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 003872 707 LGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 707 ~~~~g~~~~A~~~~~~m~~ 725 (790)
|...|++++|...|++..+
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666555
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.36 E-value=1.5e-05 Score=66.44 Aligned_cols=98 Identities=12% Similarity=0.165 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003872 591 IDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG 670 (790)
Q Consensus 591 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 670 (790)
...+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4445555555555555555555555554433 2344455555555555555555555555555432 2244455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHh
Q 003872 671 LGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 671 ~~~~g~~~~A~~~~~~~~~~ 690 (790)
|...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555555544
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.36 E-value=1.5e-05 Score=66.72 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003872 628 TYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVL 707 (790)
Q Consensus 628 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~ 707 (790)
.+......|.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHH
Confidence 34445555666666666666666655542 2345555555666666666666666666655542 33455555555566
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 003872 708 GKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 708 ~~~g~~~~A~~~~~~m~~ 725 (790)
...|++++|.+.|++..+
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 666666666666665555
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.36 E-value=1.4e-05 Score=67.67 Aligned_cols=101 Identities=19% Similarity=0.052 Sum_probs=58.7
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.++..+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3455566666666666666666666666665543 3345555555556666666666666666655542 2244555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh
Q 003872 668 IQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
...|...|++++|.+.++++.+.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 55555566666666666555554
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.35 E-value=8.1e-06 Score=73.50 Aligned_cols=119 Identities=8% Similarity=0.034 Sum_probs=58.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 003872 639 KGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINV-LGKAGRF--DE 715 (790)
Q Consensus 639 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 715 (790)
.|++++|...+++..+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 444555555555544432 2344455555555555555555555555555542 2244444455555 4455555 55
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 716 ANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 716 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
|...++++.+.. +.+...+..+..++...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 555555555431 112444555555555556666666666555543
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.35 E-value=4.6e-06 Score=77.08 Aligned_cols=158 Identities=11% Similarity=-0.024 Sum_probs=116.0
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC-CCHHHHHHHHHHHHhcCC
Q 003872 602 LAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK----FCP-TDIATYNVVIQGLGKMGR 676 (790)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~ 676 (790)
...|++++|.+.++.+... .......+..+...+...|++++|...+++..+. +.. ....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3568999999966555432 2345678888899999999999999999988762 111 234567788889999999
Q ss_pred HHHHHHHHHHHHHh---CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHhccC
Q 003872 677 ADLASTILDKLMKQ---GGGYL--DVVMYNTLINVLGKAGRFDEANMLFEQMRTS---GINPD--VVTFNTLIEVNGKAG 746 (790)
Q Consensus 677 ~~~A~~~~~~~~~~---~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~--~~~~~~l~~~~~~~g 746 (790)
+++|...+++..+. .+..+ ....+..+..++...|++++|...+++.... .-.+. ..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999988765 21111 2346778888899999999999999988742 11111 334678889999999
Q ss_pred CHHHHHHHHHHHHh
Q 003872 747 RLKEAHYFLKMMLD 760 (790)
Q Consensus 747 ~~~~A~~~~~~m~~ 760 (790)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.34 E-value=1.3e-05 Score=67.50 Aligned_cols=118 Identities=10% Similarity=0.009 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ 669 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 669 (790)
+...+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 44455555566666666666666666555443 2344555555555555555555555555555442 223445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003872 670 GLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG 711 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 711 (790)
.|...|++++|...++++.+.. +.+...+..+..++...|
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHh
Confidence 5555555555555555555542 223444444444444444
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.32 E-value=5.7e-06 Score=71.73 Aligned_cols=97 Identities=14% Similarity=0.016 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 003872 661 IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIE 740 (790)
Q Consensus 661 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 740 (790)
...+..+...+...|++++|...|++++... +.+...|..+..+|...|++++|...|++..... +.+...|..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3445556666677777777777777776653 3466666667777777777777777777776642 224566666777
Q ss_pred HHhccCCHHHHHHHHHHHHh
Q 003872 741 VNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 741 ~~~~~g~~~~A~~~~~~m~~ 760 (790)
+|...|++++|++.+++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777664
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.32 E-value=2.2e-05 Score=77.41 Aligned_cols=172 Identities=8% Similarity=-0.034 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHhCC---CCC--
Q 003872 85 CTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDS------ETFKLLLEPCIKSGKIDFAIEILDYMEELGT---SLS-- 153 (790)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~-- 153 (790)
..+...+..+...|++++|.+.+....+.... .. ..+..+...+...|++++|++.|++...... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 44556677888999999999999988776432 22 2244466667788999999999999886422 112
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhc---C
Q 003872 154 PNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQ---K 230 (790)
Q Consensus 154 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~ 230 (790)
..+++.+...|...|++++|...++++++.......+ ......+++.+...|...|++++|...++...+. .
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-----~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~ 229 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-----EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-----ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999988542111000 0001246666777777777777777777766541 1
Q ss_pred CCCC-chhhHHHHHHHHhccCChHHH-HHHHHHH
Q 003872 231 EFEF-DIYGYNICIHAFGCWGDLHTS-LRLFKEM 262 (790)
Q Consensus 231 ~~~~-~~~~~~~li~~~~~~g~~~~a-~~~~~~m 262 (790)
+... -..+|..+...|.+.|+.++| ...+++.
T Consensus 230 ~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 1111 144556666666666666666 5545544
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.31 E-value=1.8e-05 Score=66.98 Aligned_cols=119 Identities=12% Similarity=0.028 Sum_probs=81.9
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003872 623 HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNT 702 (790)
Q Consensus 623 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 702 (790)
+.+...|..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHH
Confidence 4455667777777778888888888888777652 3356677777777777888888888888777763 345667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccC
Q 003872 703 LINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAG 746 (790)
Q Consensus 703 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g 746 (790)
+..++...|++++|.+.|++..+. .| +...+..+..++.+.|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 777777778888888887777764 23 3445555555555444
No 136
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.31 E-value=8.2e-05 Score=73.30 Aligned_cols=162 Identities=12% Similarity=0.041 Sum_probs=89.7
Q ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCCch----hhHHHHHHHHhccCChHHHHHHHHHHHHCCCC-CC----HhHHHHH
Q 003872 207 LVALRKSDRRSEFKQVFERLKEQKEFEFDI----YGYNICIHAFGCWGDLHTSLRLFKEMKEKGLV-PD----LHTYNSL 277 (790)
Q Consensus 207 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~l 277 (790)
+..+...|++++|...++...+.....|+. ..+..+...+...|++++|...|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445566666677766666666533223332 12334555666667777777777777763222 12 2256777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHH
Q 003872 278 IQVLCVVGKVKDALIVWEELKG----S-GHEPN-EFTHRIIIQGCCKSYRMDDAMKIFSEMQYN----GLIPD-TVVYNS 346 (790)
Q Consensus 278 l~~~~~~~~~~~a~~~~~~~~~----~-g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ 346 (790)
..+|...|++++|...|++..+ . +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777777777777777777652 1 11111 224556666666666776666666655421 11111 344555
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHH
Q 003872 347 LLNGMFKSRK-VMEACQLFEKMV 368 (790)
Q Consensus 347 li~~~~~~~~-~~~a~~l~~~~~ 368 (790)
+...+.+.|+ .++|...+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555555553 455555555443
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.29 E-value=6.6e-06 Score=74.09 Aligned_cols=121 Identities=5% Similarity=0.009 Sum_probs=100.5
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhcCCH--H
Q 003872 602 LAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQG-LGKMGRA--D 678 (790)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~ 678 (790)
...|++++|...++...+.. +.+...|..+...|...|++++|...|+++.+.. +.+...+..+... |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34678889999998887765 5677889999999999999999999999998874 3467788888888 7889998 9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 679 LASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 679 ~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
+|...++++++.. +.+...+..+..+|...|++++|...|+++.+.
T Consensus 99 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999999874 446788888999999999999999999999884
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.29 E-value=2e-05 Score=66.37 Aligned_cols=119 Identities=12% Similarity=-0.005 Sum_probs=76.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLI 704 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li 704 (790)
+...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHH
Confidence 34555666666777777777777777776652 3356666667777777777777777777776653 33466666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCC
Q 003872 705 NVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGR 747 (790)
Q Consensus 705 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 747 (790)
.++...|++++|...|++..+.. +.+...+..+..++.+.|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 77777777777777777766642 1245555566666655554
No 139
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.28 E-value=0.00044 Score=68.17 Aligned_cols=83 Identities=10% Similarity=0.029 Sum_probs=47.9
Q ss_pred CCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-C-ChhHHH
Q 003872 98 GFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSG-KIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRK-K-QLGLAM 174 (790)
Q Consensus 98 ~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~ 174 (790)
+..++|+++++.+...+.. +..+|+.--..+...| .+++++++++.+....+ -+..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3335677777766666532 5555666555555566 36666666666666542 3555565555555554 4 555555
Q ss_pred HHHHHHHH
Q 003872 175 SILFKLLE 182 (790)
Q Consensus 175 ~~~~~~~~ 182 (790)
..++++++
T Consensus 146 ~~~~k~L~ 153 (349)
T 3q7a_A 146 EYIHGSLL 153 (349)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHHH
Confidence 55555544
No 140
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.28 E-value=0.00044 Score=68.18 Aligned_cols=177 Identities=10% Similarity=-0.024 Sum_probs=117.2
Q ss_pred HHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccC-ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-C-
Q 003872 209 ALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWG-DLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVV-G- 285 (790)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-~- 285 (790)
...+.+..++|+++++.+... -+-+..+|+.--..+...| .+++++.+++.+.....+ +..+|+.-..++... +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 334445556788888888763 2224556676666666667 588888888888877544 666777666666665 6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-
Q 003872 286 KVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMD--------DAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRK- 356 (790)
Q Consensus 286 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~- 356 (790)
++++++++++.+.+.. +.+...|+.-.-.+.+.+.++ ++++.++++.+.... |...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 7788888888888764 556777766555555555554 777888887766433 67777777766666665
Q ss_pred ------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003872 357 ------VMEACQLFEKMVQDGVRTSCWTHNILIDGLFRNGR 391 (790)
Q Consensus 357 ------~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~ 391 (790)
++++++.++++.... +-|...|+.+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 567777777776654 3366667666555555544
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.28 E-value=1.7e-05 Score=68.71 Aligned_cols=102 Identities=10% Similarity=-0.085 Sum_probs=63.4
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.+...+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l 95 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 3455556666666666677777776666665554 3455666666666666666666666666666542 2345556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 668 IQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
..+|...|++++|...|+++++..
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 666666666666666666666543
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.28 E-value=2.4e-05 Score=69.24 Aligned_cols=98 Identities=8% Similarity=-0.031 Sum_probs=55.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLI 704 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li 704 (790)
+...|..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..++++++.. +.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 34445555555666666666666666655542 2245555555555666666666666666655542 23455555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 003872 705 NVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 705 ~~~~~~g~~~~A~~~~~~m~~ 725 (790)
.+|...|++++|...|++..+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 555566666666666665554
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=7e-05 Score=63.75 Aligned_cols=99 Identities=12% Similarity=-0.058 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHH
Q 003872 659 TDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTL 738 (790)
Q Consensus 659 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 738 (790)
.+...+..+...+...|++++|...|++++... +.+...|..+..++...|++++|...+++..+.. +.+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 355666667777777777777777777777663 3456677777777777777777777777777642 2246667777
Q ss_pred HHHHhccCCHHHHHHHHHHHHh
Q 003872 739 IEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 739 ~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
..++...|++++|+..+++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777777777777664
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.22 E-value=2.7e-05 Score=78.34 Aligned_cols=130 Identities=11% Similarity=-0.018 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD--------------IATYNVVIQGLGKMGRADLASTILDKLMKQGG 692 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 692 (790)
..|..+...|.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|+..++++++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3444444445555555555555555544321111 3556666666666677777777776666653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHH-HHHHHHHH
Q 003872 693 GYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEA-HYFLKMML 759 (790)
Q Consensus 693 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 759 (790)
+.+...|..+..+|...|++++|...|+++.+.. +-+...+..+..++.+.|+.++| ..++++|.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666677777777776666531 12355566666666666666666 33444443
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.22 E-value=2.8e-05 Score=78.23 Aligned_cols=134 Identities=12% Similarity=0.002 Sum_probs=114.2
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPV--------------NYTYNSMMSSFVKKGYFNQAWGVLNEMGE 654 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 654 (790)
.+...+..+...|.+.|++++|...|+...+...... ...|..+..+|.+.|++++|+..+++.++
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567788899999999999999999999987742211 47889999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 003872 655 KFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEA-NMLFEQMRT 725 (790)
Q Consensus 655 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 725 (790)
.. +.+...|..+..+|...|++++|...|+++++.. +.+...+..+..++.+.|+.++| ..+|+.|..
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 4478899999999999999999999999999874 45678888999999999999988 556777653
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.21 E-value=2e-05 Score=72.66 Aligned_cols=136 Identities=14% Similarity=0.048 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCC--
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDM----GV-HPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK--FCPTD-- 660 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~-- 660 (790)
...++..+...+...|++++|...+++..+. +. +....++..+...|...|++++|...+++..+. ....+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 4567788899999999999999999887652 21 223456788888999999999999999987654 11112
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 661 --IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 661 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
...+..+...+...|++++|...+++.........+ ..++..+..++...|++++|.+.+++..+
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345778888999999999999999998754211122 23467788889999999999999998875
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.20 E-value=1.2e-05 Score=78.55 Aligned_cols=100 Identities=9% Similarity=-0.084 Sum_probs=75.7
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLV 162 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (790)
+...+..+...+.+.|++++|...++....... -+...+..+...|.+.|++++|++.+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 455666777778888888888888888777642 367777788888888888888888888877754 345677778888
Q ss_pred HHHhcCChhHHHHHHHHHHHHh
Q 003872 163 SLVRKKQLGLAMSILFKLLEAC 184 (790)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~ 184 (790)
++...|++++|...|.++++..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888777653
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.19 E-value=2.7e-05 Score=66.93 Aligned_cols=102 Identities=12% Similarity=-0.030 Sum_probs=68.9
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.+...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 92 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 3455556666677777777777777777776654 4456666677777777777777777777776653 3355566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 668 IQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
..+|...|++++|...|+++++..
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777777777777777777766653
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.19 E-value=4.3e-05 Score=65.65 Aligned_cols=95 Identities=14% Similarity=-0.020 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVN 742 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 742 (790)
.+..+...+.+.|++++|...|++++... +.+...|..+..+|...|++++|...|++..... +.+...|..+..+|
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 34444555666666666666666666653 3355566666666666677777777766666542 22345566666666
Q ss_pred hccCCHHHHHHHHHHHHh
Q 003872 743 GKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 743 ~~~g~~~~A~~~~~~m~~ 760 (790)
...|++++|++.+++..+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 677777777777766654
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.18 E-value=4.2e-05 Score=72.77 Aligned_cols=126 Identities=11% Similarity=-0.066 Sum_probs=64.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHh
Q 003872 632 MMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD--VVMYNTLINVLGK 709 (790)
Q Consensus 632 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~li~~~~~ 709 (790)
+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHHHHHHHHHHHHH
Confidence 3444555666666666666555432 332244444445556666666666665332210 110 1234445555666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 710 AGRFDEANMLFEQMRTSGINPD--VVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 710 ~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
.|++++|+..|++.......|. ...+.....++.+.|+.++|..+|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6666666666666553222132 234445555666666666666666666543
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.17 E-value=4.2e-05 Score=67.71 Aligned_cols=108 Identities=11% Similarity=-0.009 Sum_probs=94.1
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVV 667 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 667 (790)
+.+...+..+...+...|++++|+..|+...+.. +.+...|..+..+|...|++++|+..|++.++.. +.+...|..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4467788899999999999999999999998875 5578889999999999999999999999999874 4468899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCH
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDV 697 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 697 (790)
..+|...|++++|...|+++++..+-.++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 999999999999999999999876344443
No 152
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.17 E-value=4.6e-05 Score=72.45 Aligned_cols=200 Identities=6% Similarity=-0.109 Sum_probs=124.2
Q ss_pred hcCChHHHHHHHHHHHHhCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHHhccCCCCCcc-cc-------
Q 003872 131 KSGKIDFAIEILDYMEELGTSLSPNVYDSV-------LVSLVRKKQLGLAMSILFKLLEACNDNTADNSV-VE------- 195 (790)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~------- 195 (790)
..++...|.+.|.++....+ -..+.|..+ ...+.+.++..++...+.+.+............ .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 57999999999999999863 366778777 566666666666666666555422111100000 00
Q ss_pred -cCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCC--Hh
Q 003872 196 -SLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPD--LH 272 (790)
Q Consensus 196 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~ 272 (790)
...-....-.+...+...|++++|.++|+.+.. ..|+....-.+...+.+.+++++|+..|+...... .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 000012334466677788888888888877764 22333355555567777888888888887554321 111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 273 TYNSLIQVLCVVGKVKDALIVWEELKGSGHEPN--EFTHRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 273 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
.+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 566667777788888888888887764432143 234555666677778888888888887765
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.16 E-value=4.4e-06 Score=76.92 Aligned_cols=155 Identities=14% Similarity=0.011 Sum_probs=94.2
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---------------HHHHHH
Q 003872 602 LAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD---------------IATYNV 666 (790)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---------------~~~~~~ 666 (790)
...|+++++.+.++.-.+.. ......+..+...+...|++++|+..|++..+...... ...+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp -------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 33445555544443222110 12334566667777788888888888888776422111 267777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC
Q 003872 667 VIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAG 746 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 746 (790)
+..+|...|++++|...++++++.. +.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...|
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHH
Confidence 7888888888888888888888873 4567778888888888888888888888887742 224566777777777777
Q ss_pred CHHHHH-HHHHHHHh
Q 003872 747 RLKEAH-YFLKMMLD 760 (790)
Q Consensus 747 ~~~~A~-~~~~~m~~ 760 (790)
+.+++. ..+..|..
T Consensus 171 ~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 171 EARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHC-----------
T ss_pred HHHHHHHHHHHHHhc
Confidence 666665 44555543
No 154
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.14 E-value=5.3e-05 Score=63.69 Aligned_cols=98 Identities=16% Similarity=0.097 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC----hHHH
Q 003872 662 ATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGI--NPD----VVTF 735 (790)
Q Consensus 662 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~ 735 (790)
..+..+...+...|++++|...++++.... +.+...+..+..++...|++++|...++++..... .++ ..+|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 345556666667777777777777766653 34566666667777777777777777777665311 112 5566
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 736 NTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 736 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
..+..++.+.|++++|.+.+++..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 67777777777777777777777654
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.13 E-value=6.8e-05 Score=62.76 Aligned_cols=94 Identities=17% Similarity=0.081 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 629 YNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLG 708 (790)
Q Consensus 629 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~ 708 (790)
|..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 3334444444455555555555444432 2234444455555555555555555555555442 223444455555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 003872 709 KAGRFDEANMLFEQMRT 725 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~ 725 (790)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555544
No 156
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.12 E-value=2.9e-05 Score=75.90 Aligned_cols=100 Identities=13% Similarity=-0.040 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ 669 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 669 (790)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+...|.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45667788899999999999999999998774 4578889999999999999999999999999873 446788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhC
Q 003872 670 GLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
+|...|++++|...|+++.+..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999988754
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.12 E-value=6.4e-05 Score=62.99 Aligned_cols=54 Identities=17% Similarity=0.050 Sum_probs=20.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 633 MSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKL 687 (790)
Q Consensus 633 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 687 (790)
...+.+.|++++|+..|++.++.. +.+...|+.+..+|...|++++|++.+++.
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 333333344444444444333321 122333333334444444444444444433
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.12 E-value=2.6e-05 Score=65.47 Aligned_cols=105 Identities=15% Similarity=0.087 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCC----hHH
Q 003872 661 IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSG--INPD----VVT 734 (790)
Q Consensus 661 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~ 734 (790)
...+.-+...|.+.|++++|++.|+++++.. +-+...|+.+..+|...|++++|+..+++..+.. ..++ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 3456778889999999999999999999874 4578889999999999999999999999988631 1222 246
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 003872 735 FNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 735 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 769 (790)
|..+..++...|++++|++.+++.++. .||+.+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 778889999999999999999998864 455433
No 159
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.11 E-value=0.0011 Score=64.99 Aligned_cols=172 Identities=6% Similarity=-0.035 Sum_probs=128.0
Q ss_pred cchHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHhhcCCCCCHHHH
Q 003872 588 TFDIDMVNTFLSIFLAKG--KLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGY-FNQAWGVLNEMGEKFCPTDIATY 664 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~ 664 (790)
|.+..+|+.-.-.+.+.+ .+++++.+++.+.+.. +.|...|+.-...+...|. ++++++.++++++..+ -|...|
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW 182 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSW 182 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHH
Confidence 446777777777777777 4899999999998876 6688888888888888888 5899999999998754 478888
Q ss_pred HHHHHHHHhc--------------CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHH
Q 003872 665 NVVIQGLGKM--------------GRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKA-----------GRFDEANML 719 (790)
Q Consensus 665 ~~li~~~~~~--------------g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~ 719 (790)
+.....+.+. +.++++++.+++++... +-|...|+-+-..+.+. +.++++++.
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 8776666554 45889999999999874 55777887665555555 457899999
Q ss_pred HHHHHhcCCCCChHHHHHHHH-----HHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 720 FEQMRTSGINPDVVTFNTLIE-----VNGKAGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 720 ~~~m~~~g~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
++++.+. .|+. .|..+.. +....|..+++..++.++.+. .|-..
T Consensus 261 ~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~ 309 (331)
T 3dss_A 261 CKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRA 309 (331)
T ss_dssp HHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--Ccchh
Confidence 9999984 5664 3433222 223467788899999998843 55443
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.10 E-value=0.00015 Score=59.39 Aligned_cols=91 Identities=14% Similarity=-0.011 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc
Q 003872 666 VVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKA 745 (790)
Q Consensus 666 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 745 (790)
.+...+...|++++|...++++.... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++...
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 33334444444444444444444331 2233334444444444444444444444444321 11233344444444444
Q ss_pred CCHHHHHHHHHHHH
Q 003872 746 GRLKEAHYFLKMML 759 (790)
Q Consensus 746 g~~~~A~~~~~~m~ 759 (790)
|++++|.+.+++..
T Consensus 86 ~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 86 NRFEEAKRTYEEGL 99 (118)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444444
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.10 E-value=7.7e-05 Score=62.41 Aligned_cols=96 Identities=13% Similarity=-0.050 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 003872 662 ATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEV 741 (790)
Q Consensus 662 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 741 (790)
..+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345555566666677777777776666653 3355666666666666677777777776666532 1235566666666
Q ss_pred HhccCCHHHHHHHHHHHHh
Q 003872 742 NGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 742 ~~~~g~~~~A~~~~~~m~~ 760 (790)
+...|++++|++.+++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 6667777777776666654
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.07 E-value=0.00015 Score=59.46 Aligned_cols=96 Identities=17% Similarity=0.033 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINV 706 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~ 706 (790)
..+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 334445555555555555555555555442 2245555555555666666666666666655542 2345555555666
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 003872 707 LGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 707 ~~~~g~~~~A~~~~~~m~~ 725 (790)
+...|++++|...+++..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666654
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.07 E-value=5.2e-05 Score=61.65 Aligned_cols=97 Identities=10% Similarity=-0.023 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--ChHHHHHHH
Q 003872 662 ATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP--DVVTFNTLI 739 (790)
Q Consensus 662 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~ 739 (790)
..+..+...+...|++++|...++++.+.. +.+...|..+..++...|++++|...+++..+.. +. +...|..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 344455555666666666666666666553 3345566666666666666777776666666531 11 355666666
Q ss_pred HHHhcc-CCHHHHHHHHHHHHhC
Q 003872 740 EVNGKA-GRLKEAHYFLKMMLDS 761 (790)
Q Consensus 740 ~~~~~~-g~~~~A~~~~~~m~~~ 761 (790)
.++.+. |++++|++.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 667777 7777777777766644
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.06 E-value=0.00017 Score=61.33 Aligned_cols=99 Identities=12% Similarity=-0.002 Sum_probs=63.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003872 624 PVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTL 703 (790)
Q Consensus 624 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 703 (790)
.+...|..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...++++++.. +.+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHH
Confidence 345556666666666666666666666666552 2345666666666667777777777777766653 3355666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 003872 704 INVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 704 i~~~~~~g~~~~A~~~~~~m~~ 725 (790)
..+|...|++++|...|++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 6677777777777777776664
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.02 E-value=7.6e-05 Score=60.63 Aligned_cols=99 Identities=10% Similarity=0.032 Sum_probs=70.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC--CHHHHHH
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYL--DVVMYNT 702 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~ 702 (790)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+.. +. +...|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHH
Confidence 44556666677777777777777777777653 3356667777777777788888888887777653 23 5667777
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhc
Q 003872 703 LINVLGKA-GRFDEANMLFEQMRTS 726 (790)
Q Consensus 703 li~~~~~~-g~~~~A~~~~~~m~~~ 726 (790)
+..++... |++++|.+.+++....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 77777778 8888888888777764
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.01 E-value=0.00011 Score=67.48 Aligned_cols=132 Identities=11% Similarity=-0.000 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVN----------------YTYNSMMSSFVKKGYFNQAWGVLNEMG 653 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~ 653 (790)
....+..+...+...|++++|...|+...+.. +.+. ..|..+..+|...|++++|+..+++..
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34567778889999999999999999998753 2222 678888899999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHh
Q 003872 654 EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEAN-MLFEQMRT 725 (790)
Q Consensus 654 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 725 (790)
+.. +.+...+..+..+|...|++++|...|+++.+.. +-+...+..+..++...|+.+++. ..|..|..
T Consensus 116 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 116 KID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 873 4578889999999999999999999999999874 446777888887877777777666 55555554
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.00 E-value=5.7e-05 Score=63.48 Aligned_cols=96 Identities=13% Similarity=0.062 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCC----HHHHHH
Q 003872 593 MVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFC--PTD----IATYNV 666 (790)
Q Consensus 593 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~----~~~~~~ 666 (790)
.+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...++++.+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34445555555555555555555554443 23444444455555555555555555555444311 111 334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 003872 667 VIQGLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~ 689 (790)
+...|...|++++|.+.|+++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44444444555555555544444
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=0.00039 Score=59.80 Aligned_cols=95 Identities=17% Similarity=0.064 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD----IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNT 702 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 702 (790)
..+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++..+.. +.+...|..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHHH
Confidence 33444444444444444444444444443 222 3344444445555555555555555555442 223444445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 003872 703 LINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 703 li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
+..+|...|++++|...|++...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555554
No 169
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.95 E-value=5.3e-05 Score=66.60 Aligned_cols=97 Identities=14% Similarity=0.022 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-ChH
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRTS----GINP-DVV 733 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ 733 (790)
++..+...|...|++++|...+++..+......+ ...+..+..++...|++++|...+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444445555555555555555554432100011 334555555666666666666666665531 1111 134
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 734 TFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 734 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
++..+...+...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55666667777777777777777665
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=0.00036 Score=60.07 Aligned_cols=114 Identities=16% Similarity=0.094 Sum_probs=94.5
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHH
Q 003872 588 TFDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPV----NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIAT 663 (790)
Q Consensus 588 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 663 (790)
+.+...+..+...+...|++++|...|+...+.. |+ ...|..+...|...|++++|+..+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 4567788899999999999999999999998764 55 6788888999999999999999999998863 346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003872 664 YNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINV 706 (790)
Q Consensus 664 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~ 706 (790)
+..+..+|...|++++|...|++..+.. +.+...+..+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE--PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHH
Confidence 8899999999999999999999999874 3345555444433
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.00044 Score=72.56 Aligned_cols=129 Identities=7% Similarity=-0.068 Sum_probs=89.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh----CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC----CC-CHHHHHH
Q 003872 597 FLSIFLAKGKLNLACKLFEIFTD----MGVHP-VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFC----PT-DIATYNV 666 (790)
Q Consensus 597 li~~~~~~~~~~~a~~~~~~~~~----~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~-~~~~~~~ 666 (790)
+...+...|+.+.|..++..... .+..+ -..++..|...|...|++++|..++++....-. .+ ...++..
T Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (434)
T 4b4t_Q 101 IEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLL 180 (434)
T ss_dssp HHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 33444456788888888776643 22222 245677888899999999999999988764311 11 2447788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 667 VIQGLGKMGRADLASTILDKLMKQGGGYLD-----VVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
++..|...|++++|..++++........++ ...+..+...+...|++++|...|.+..+
T Consensus 181 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 181 ESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 888999999999999999887654211111 24566666777788999999888877754
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.90 E-value=0.0059 Score=59.87 Aligned_cols=135 Identities=11% Similarity=0.011 Sum_probs=74.0
Q ss_pred HhcCCcc-hHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003872 95 CRAGFLE-EVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGK----------IDFAIEILDYMEELGTSLSPNVYDSVLVS 163 (790)
Q Consensus 95 ~~~~~~~-~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 163 (790)
.+.|.++ +|+.+.+.+...++. +..+|+.--..+...+. +++++.+++.+....+ -+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3455555 577777777766532 44455443333333322 4566666666666542 355666666666
Q ss_pred HHhcCC--hhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccc-hHHHHHHHHHHHhcCCCCCchhhHH
Q 003872 164 LVRKKQ--LGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDR-RSEFKQVFERLKEQKEFEFDIYGYN 240 (790)
Q Consensus 164 ~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (790)
+.+.+. +++++..++++++. .+.|..+|+.-.-.+...|. ++++++.+..+.+. -+-|..+|+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~------------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~ 183 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEA------------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWH 183 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 666653 56666666666665 45555666655555555555 35556665555542 122444444
Q ss_pred HHHHH
Q 003872 241 ICIHA 245 (790)
Q Consensus 241 ~li~~ 245 (790)
.....
T Consensus 184 ~R~~l 188 (331)
T 3dss_A 184 YRSCL 188 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.86 E-value=0.00013 Score=64.11 Aligned_cols=136 Identities=13% Similarity=-0.010 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC---
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVH-PV----NYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP-TD--- 660 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~--- 660 (790)
...++..+...|...|++++|...++...+.... ++ ..++..+...+...|++++|...+++..+.... ++
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 3557788899999999999999999887654211 11 146778888999999999999999987654111 12
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 661 -IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 661 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
..++..+...+...|++++|...+++..+......+ ...+..+..++...|++++|.+.+++..+
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 446777888899999999999999998754211112 45677788889999999999999998875
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.86 E-value=0.00015 Score=59.96 Aligned_cols=94 Identities=12% Similarity=-0.016 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003872 629 YNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLG 708 (790)
Q Consensus 629 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~ 708 (790)
+..+...+.+.|++++|+..|++.++.. +.+...|..+..++...|++++|+..|+++++.. +-+...+..+..+|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 3344455555666666666666655542 2245555555555666666666666666655542 224445555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 003872 709 KAGRFDEANMLFEQMRT 725 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~~ 725 (790)
..|++++|...|++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55666666666555554
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.83 E-value=0.00023 Score=62.62 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc-c-hhHHH
Q 003872 697 VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV-T-DTTLD 774 (790)
Q Consensus 697 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t-~~~l~ 774 (790)
...|..+..+|.+.|++++|...+++..... +.+...|..+..+|...|++++|+..+++..+. .|+.. . ...|.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 4566777777777888888888888777642 224667777778888888888888888877754 55543 2 23333
Q ss_pred HHHHHHHhhhh
Q 003872 775 FLGREIDRLKD 785 (790)
Q Consensus 775 ~l~~~~~~~~~ 785 (790)
.+.....+.++
T Consensus 140 ~~~~~~~~~~~ 150 (162)
T 3rkv_A 140 IVTERRAEKKA 150 (162)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.80 E-value=0.00024 Score=58.74 Aligned_cols=93 Identities=17% Similarity=0.005 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 003872 595 NTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKM 674 (790)
Q Consensus 595 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 674 (790)
..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..+|...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 334455555555555555555555443 3344555555555555555555555555555542 22444555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 003872 675 GRADLASTILDKLMK 689 (790)
Q Consensus 675 g~~~~A~~~~~~~~~ 689 (790)
|++++|...++++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.79 E-value=4.9e-05 Score=62.63 Aligned_cols=85 Identities=22% Similarity=0.237 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003872 605 GKLNLACKLFEIFTDMG--VHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLAST 682 (790)
Q Consensus 605 ~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 682 (790)
|++++|+..|++.++.+ -+.+...+..+...|...|++++|+..|++..+.. +.+...+..+..+|...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555555555432 12223344445555555555555555555555442 2234444555555555555555555
Q ss_pred HHHHHHHh
Q 003872 683 ILDKLMKQ 690 (790)
Q Consensus 683 ~~~~~~~~ 690 (790)
.+++.+..
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00074 Score=70.80 Aligned_cols=170 Identities=11% Similarity=-0.096 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhc---CC-C
Q 003872 157 YDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQ---KE-F 232 (790)
Q Consensus 157 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~-~ 232 (790)
+..+...|...|++++|.+.+.++......... ......+.+.+-..+...|+++++..++...... .+ .
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK------SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV 131 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH------HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc------hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 455556666666666666666555443210000 0000011112222223345555555555444321 11 1
Q ss_pred CCchhhHHHHHHHHhccCChHHHHHHHHHHHHC--CC--CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC
Q 003872 233 EFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK--GL--VP-DLHTYNSLIQVLCVVGKVKDALIVWEELKGS----GHE 303 (790)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~ 303 (790)
..-..++..+...|...|++++|..++++.... +. .+ ...++..++..|...|++++|..++++.... +.+
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 211 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP 211 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence 112345555666666666666666666655432 11 11 1234555556666666666666666554321 111
Q ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 304 PN--EFTHRIIIQGCCKSYRMDDAMKIFSEM 332 (790)
Q Consensus 304 ~~--~~~~~~li~~~~~~~~~~~a~~~~~~m 332 (790)
+. ...+..+...+...+++++|...|.+.
T Consensus 212 ~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 212 TQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11 123333444444555566555555444
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.76 E-value=0.00074 Score=56.44 Aligned_cols=92 Identities=16% Similarity=0.094 Sum_probs=45.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---HHHHHHHHHH
Q 003872 597 FLSIFLAKGKLNLACKLFEIFTDMGVHPVN---YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD---IATYNVVIQG 670 (790)
Q Consensus 597 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~ 670 (790)
+...+...|++++|...|+.+.+.. +.+. ..+..+...+...|++++|...|+++.+... .+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHH
Confidence 3444555556666665555555432 1122 2444455555555555555555555554321 12 3344445555
Q ss_pred HHhcCCHHHHHHHHHHHHHh
Q 003872 671 LGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 671 ~~~~g~~~~A~~~~~~~~~~ 690 (790)
|...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55555555555555555544
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.73 E-value=5.6e-05 Score=62.29 Aligned_cols=87 Identities=10% Similarity=-0.023 Sum_probs=57.8
Q ss_pred hcCCcchHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHH
Q 003872 96 RAGFLEEVPSLLNSMQEDD--VVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLA 173 (790)
Q Consensus 96 ~~~~~~~a~~l~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 173 (790)
..|++++|+..|+...+.+ -+-+..++..+...|...|++++|+..|++..+..+ .++.++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 3567777777777777753 122456677777777777778888877777777653 3566777777777777777777
Q ss_pred HHHHHHHHHH
Q 003872 174 MSILFKLLEA 183 (790)
Q Consensus 174 ~~~~~~~~~~ 183 (790)
...+++.++.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777664
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.73 E-value=0.00076 Score=56.37 Aligned_cols=92 Identities=16% Similarity=0.024 Sum_probs=50.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHH
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLD-VVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD----VVTFNTLIEVN 742 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~ 742 (790)
...+...|++++|...|+++.+..+..+. ...+..+..++...|++++|...|+++.... |+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHH
Confidence 34455556666666666666554311110 0344455555666666666666666665531 22 34455566666
Q ss_pred hccCCHHHHHHHHHHHHhC
Q 003872 743 GKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 743 ~~~g~~~~A~~~~~~m~~~ 761 (790)
.+.|++++|...++++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666543
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.71 E-value=0.00017 Score=76.03 Aligned_cols=132 Identities=12% Similarity=-0.002 Sum_probs=106.6
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 003872 83 TACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVD--------------SETFKLLLEPCIKSGKIDFAIEILDYMEEL 148 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 148 (790)
....|..+...+.+.|++++|...|+...+...... ..+|..+..+|.+.|++++|+..|++..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456778888899999999999999999988643221 588999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHH-HHHHHH
Q 003872 149 GTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQ-VFERLK 227 (790)
Q Consensus 149 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~-~~~~~~ 227 (790)
.. .+...|..+..+|...|++++|...|+++++. .+.+...+..+...+.+.++++++.. .+..|.
T Consensus 347 ~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l------------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV------------NPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------------C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 47889999999999999999999999999875 34456778888888888888877653 444443
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.70 E-value=0.00041 Score=72.98 Aligned_cols=129 Identities=15% Similarity=0.025 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTD--------------IATYNVVIQGLGKMGRADLASTILDKLMKQGG 692 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 692 (790)
..|..+...|.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|+..++++++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 3455556666666666666666666665422111 4667777777888888888888888887763
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccCCHHHHH-HHHHHHH
Q 003872 693 GYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAGRLKEAH-YFLKMML 759 (790)
Q Consensus 693 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~ 759 (790)
+.+...|..+..+|...|++++|...|+++.+. .| +...+..+..++.+.|+.++|. ..+.+|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777788888888888888888887764 33 3556777777777777777665 3444443
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.62 E-value=0.00019 Score=75.88 Aligned_cols=122 Identities=15% Similarity=0.070 Sum_probs=95.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 003872 598 LSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRA 677 (790)
Q Consensus 598 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 677 (790)
...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 344667899999999999998875 5568899999999999999999999999999873 44678899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 678 DLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFE 721 (790)
Q Consensus 678 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 721 (790)
++|.+.++++.+..+-.+........+..+.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999875333443333333333888899999999988
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.62 E-value=0.00068 Score=57.89 Aligned_cols=97 Identities=20% Similarity=0.053 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-----C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC
Q 003872 664 YNVVIQGLGKMGRADLASTILDKLMKQGGGYL-----D-----VVMYNTLINVLGKAGRFDEANMLFEQMRTS-----GI 728 (790)
Q Consensus 664 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-----~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~ 728 (790)
+......+.+.|++++|+..|++.++..+..| + ...|+.+..++.+.|++++|+..+++..+. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 34445556666777777777777766531111 2 237888888888888888888888888863 12
Q ss_pred CCC-hHHH----HHHHHHHhccCCHHHHHHHHHHHHh
Q 003872 729 NPD-VVTF----NTLIEVNGKAGRLKEAHYFLKMMLD 760 (790)
Q Consensus 729 ~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 760 (790)
.|+ ...| .....++...|++++|+..|++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 565 4567 7888899999999999999999874
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.61 E-value=0.00087 Score=58.87 Aligned_cols=68 Identities=16% Similarity=0.110 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 003872 661 IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDV 732 (790)
Q Consensus 661 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 732 (790)
...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|++.... .|+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 4566677777777888888888888777763 445667777777788888888888888877764 4543
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.60 E-value=0.00017 Score=76.31 Aligned_cols=120 Identities=13% Similarity=0.006 Sum_probs=96.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003872 632 MMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG 711 (790)
Q Consensus 632 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 711 (790)
+...+.+.|++++|+..+++..+.. +.+...|..+..+|.+.|++++|++.++++++.. +.+...|..+..+|...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 3445678899999999999999873 4468899999999999999999999999999874 456788999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCC-ChHHHHHHHHH--HhccCCHHHHHHHHH
Q 003872 712 RFDEANMLFEQMRTSGINP-DVVTFNTLIEV--NGKAGRLKEAHYFLK 756 (790)
Q Consensus 712 ~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 756 (790)
++++|.+.|++..+. .| +...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999885 23 34455556555 888899999999988
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.60 E-value=0.00072 Score=68.66 Aligned_cols=138 Identities=11% Similarity=0.002 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGL 671 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 671 (790)
..+..+...+.+.|++++|+..|+..++.- +.. ...... ++..+. -+.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~-------~~~~~~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAED-------ADGAKL-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCH-------HHHGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccCh-------HHHHHH-HHHHHHHHHHHHHHH
Confidence 345566667777777777777776665410 000 000000 000001 112344566666666
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccCCHHH
Q 003872 672 GKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAGRLKE 750 (790)
Q Consensus 672 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 750 (790)
.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|+++.+. .| +...+..+..++...++.++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 66677777777776666542 234556666666666777777777777766653 23 34555566666666666555
Q ss_pred HHH
Q 003872 751 AHY 753 (790)
Q Consensus 751 A~~ 753 (790)
+.+
T Consensus 360 a~k 362 (370)
T 1ihg_A 360 KEK 362 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.59 E-value=0.002 Score=54.54 Aligned_cols=110 Identities=11% Similarity=-0.079 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003872 606 KLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGK----MGRADLAS 681 (790)
Q Consensus 606 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 681 (790)
++++|...|++..+.| .+... |...|...+..++|+..|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 5566666666666655 23322 4445555555666666666665543 44555555555555 55666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 003872 682 TILDKLMKQGGGYLDVVMYNTLINVLGK----AGRFDEANMLFEQMRTSG 727 (790)
Q Consensus 682 ~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 727 (790)
++|++..+.+ +...+..|...|.. .+++++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655543 44445555555555 455666666665555543
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.58 E-value=0.0021 Score=54.49 Aligned_cols=114 Identities=11% Similarity=-0.132 Sum_probs=96.6
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 003872 639 KGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGK----AGRFD 714 (790)
Q Consensus 639 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~ 714 (790)
.+++++|+..|++..+.|. ++.. |...|...+.+++|.+.|++..+.+ +...+..|...|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHH
Confidence 3578999999999999873 3333 7777888888999999999999876 77888888888888 78999
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCC
Q 003872 715 EANMLFEQMRTSGINPDVVTFNTLIEVNGK----AGRLKEAHYFLKMMLDSGCT 764 (790)
Q Consensus 715 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 764 (790)
+|.++|++..+.| +...+..|...|.. .+++++|.+++++..+.|..
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 9999999999865 67778888888888 89999999999999988743
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.56 E-value=0.0018 Score=69.66 Aligned_cols=171 Identities=9% Similarity=0.003 Sum_probs=135.2
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 003872 605 GKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGY----------FNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKM 674 (790)
Q Consensus 605 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 674 (790)
...++|++.++.+.+.. +-+...|+.--..+...|+ +++++..++.+.+.. +-+..+|+.-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 35567899999998875 4566778777777777777 899999999999874 34788999888888999
Q ss_pred C--CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc------
Q 003872 675 G--RADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG-RFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKA------ 745 (790)
Q Consensus 675 g--~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~------ 745 (790)
| +++++++.++++.+.. +-|...|+.-..++.+.| .++++.+.++++.+..+. |...|+....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccc
Confidence 9 7799999999999985 568889998888888889 899999999999886433 677888777776653
Q ss_pred --------CCHHHHHHHHHHHHhCCCCCCccc-hhHHHHHHHHHHh
Q 003872 746 --------GRLKEAHYFLKMMLDSGCTPNHVT-DTTLDFLGREIDR 782 (790)
Q Consensus 746 --------g~~~~A~~~~~~m~~~~~~p~~~t-~~~l~~l~~~~~~ 782 (790)
+.++++++++++.... .|+..+ |..+..+....++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCC
Confidence 5689999999998864 555444 7777766655443
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.52 E-value=0.00073 Score=68.64 Aligned_cols=89 Identities=11% Similarity=-0.024 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc-chhHHH
Q 003872 696 DVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV-TDTTLD 774 (790)
Q Consensus 696 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~l~ 774 (790)
+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|++.+++..+. .|+.. .+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 56788889999999999999999999999852 225788999999999999999999999999865 55543 344555
Q ss_pred HHHHHHHhhhhhh
Q 003872 775 FLGREIDRLKDQN 787 (790)
Q Consensus 775 ~l~~~~~~~~~~~ 787 (790)
.+.....+.++..
T Consensus 349 ~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 349 KVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.45 E-value=0.0004 Score=69.73 Aligned_cols=148 Identities=14% Similarity=0.076 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ 669 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 669 (790)
....+..+...+.+.|++++|...|+...+. .|+... +...|+..++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3445556666666667777777777666544 233221 122233333322221 126777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHH-HhccCC
Q 003872 670 GLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD-VVTFNTLIEV-NGKAGR 747 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~-~~~~g~ 747 (790)
+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988874 457788888999999999999999999988763 443 4445555444 233466
Q ss_pred HHHHHHHHHHHHh
Q 003872 748 LKEAHYFLKMMLD 760 (790)
Q Consensus 748 ~~~A~~~~~~m~~ 760 (790)
.+++..++.+|..
T Consensus 315 ~~~a~~~~~~~l~ 327 (338)
T 2if4_A 315 YQKQKEMYKGIFK 327 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhhC
Confidence 7788888888874
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.44 E-value=0.0056 Score=52.25 Aligned_cols=63 Identities=21% Similarity=0.116 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQ----GGGYLD-VVMY----NTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
.|+.+..++.+.|++++|+..+++.++. +.+.|+ ...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666677777777777777777777764 112344 3466 6777778888888888888887764
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.37 E-value=0.00086 Score=54.73 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003872 610 ACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 610 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 689 (790)
|+..|+...+.. +.+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|+++.+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555554443 3345555555566666666666666666655542 22445555555566666666666666665554
Q ss_pred h
Q 003872 690 Q 690 (790)
Q Consensus 690 ~ 690 (790)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.34 E-value=0.00087 Score=70.28 Aligned_cols=127 Identities=9% Similarity=0.047 Sum_probs=92.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCCC-HHHHH
Q 003872 635 SFVKKGYFNQAWGVLNEMGEK---FCPT----DIATYNVVIQGLGKMGRADLASTILDKLMKQG-----GGYLD-VVMYN 701 (790)
Q Consensus 635 ~~~~~g~~~~A~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~p~-~~~~~ 701 (790)
.+...|++++|+.++++.++. -+.| ...+++.|..+|...|++++|..++++.++.. ..-|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355778899998888877543 1112 24578888889999999999999988876542 12232 45788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----cCCC-CC-hHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 003872 702 TLINVLGKAGRFDEANMLFEQMRT-----SGIN-PD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 702 ~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 761 (790)
.|...|...|++++|..++++..+ .|-. |+ ..+.+.+..++...|++++|..++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999988774 2321 22 445566777788888899999999988753
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00022 Score=57.77 Aligned_cols=89 Identities=18% Similarity=0.077 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------hH
Q 003872 661 IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD-------VV 733 (790)
Q Consensus 661 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 733 (790)
...+..+...+...|++++|...|+++++.. +.+...|..+..++...|++++|...+++..+. .|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 4455666666777777777777777776653 345666667777777777777777777777653 343 33
Q ss_pred HHHHHHHHHhccCCHHHHHH
Q 003872 734 TFNTLIEVNGKAGRLKEAHY 753 (790)
Q Consensus 734 ~~~~l~~~~~~~g~~~~A~~ 753 (790)
.+..+..++...|++++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHhHhhhHh
Confidence 34444444444444444433
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.28 E-value=0.00064 Score=68.24 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINV 706 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~ 706 (790)
..|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++++.. +-+...+..+..+
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l 307 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 467788889999999999999999998863 3478889999999999999999999999987653 2234445555444
Q ss_pred -HHhcCCHHHHHHHHHHHHhc
Q 003872 707 -LGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 707 -~~~~g~~~~A~~~~~~m~~~ 726 (790)
....+..+++..+|..|...
T Consensus 308 ~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 308 AEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCC
Confidence 23446678888889888753
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.24 E-value=0.0011 Score=69.52 Aligned_cols=130 Identities=9% Similarity=-0.051 Sum_probs=92.7
Q ss_pred HHhcCCcchHHHHHHHhhhC-----CC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-----CC-CCC-HHHHHH
Q 003872 94 VCRAGFLEEVPSLLNSMQED-----DV-VV-DSETFKLLLEPCIKSGKIDFAIEILDYMEEL-----GT-SLS-PNVYDS 159 (790)
Q Consensus 94 ~~~~~~~~~a~~l~~~~~~~-----~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ 159 (790)
+...|++++|+.+++...+. |. .| ...+++.|..+|...|++++|+.++++.... |. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55789999999999887652 11 11 3467899999999999999999999988753 32 122 245899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCC-cchHHHHHHHHHhccchHHHHHHHHHHHh
Q 003872 160 VLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPG-CVACNELLVALRKSDRRSEFKQVFERLKE 228 (790)
Q Consensus 160 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (790)
|...|...|++++|..+++++++......+. ..|+ ..+.+.+-.++...+.+++|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~-----~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGP-----SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT-----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887754321111 2222 23344555666677777777777777765
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.19 E-value=0.0033 Score=51.13 Aligned_cols=77 Identities=14% Similarity=-0.021 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 645 AWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 645 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
|+..|++..+.. +.+...+..+...|...|++++|...++++++.. +.+...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444432 2234444445555555555555555555554442 2234444444444555555555555555444
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.18 E-value=0.022 Score=61.29 Aligned_cols=156 Identities=7% Similarity=-0.033 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHhhcCC
Q 003872 590 DIDMVNTFLSIFLAKGK----------LNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKG--YFNQAWGVLNEMGEKFC 657 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~ 657 (790)
+..+|+.-...+...++ ++++++.++.+.+.. +-+..+|+.-...+.+.+ ++++++..++++.+...
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~ 140 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE 140 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc
Confidence 44555555555555555 899999999998876 668889999889999999 77999999999999854
Q ss_pred CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHH
Q 003872 658 PTDIATYNVVIQGLGKMG-RADLASTILDKLMKQGGGYLDVVMYNTLINVLGKA--------------GRFDEANMLFEQ 722 (790)
Q Consensus 658 ~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~ 722 (790)
+ +...|+.-...+.+.| .++++++.++++++.. +-|...|+....++.+. +.++++.+.+.+
T Consensus 141 ~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ 217 (567)
T 1dce_A 141 R-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN 217 (567)
T ss_dssp T-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH
T ss_pred c-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHH
Confidence 4 7888988888888889 8999999999998874 45778888777776653 567999999999
Q ss_pred HHhcCCCCChHHHHHHHHHHhccCCHHH
Q 003872 723 MRTSGINPDVVTFNTLIEVNGKAGRLKE 750 (790)
Q Consensus 723 m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 750 (790)
+.... +-+...|..+...+.+.|+.++
T Consensus 218 ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 218 AFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 98742 2257788888888888777444
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.07 E-value=0.0062 Score=46.70 Aligned_cols=62 Identities=10% Similarity=0.201 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGE 654 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 654 (790)
..+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444444555555555555555444432 22333444444444444444444444444443
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.00 E-value=0.009 Score=45.73 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444444444555555555555544432 22344444445555555555555555555444
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.96 E-value=0.003 Score=49.87 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNE 651 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 651 (790)
++.++..+...|...|++++|+..|+...+.. +.+...|..+..+|...|++++|+..|++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33334444444444444444444444433332 22233333333334444444444443333
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.93 E-value=0.0029 Score=53.83 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 003872 677 ADLASTILDKLMKQGGGYLDVVMYNTLINVLGKA-----------GRFDEANMLFEQMRTSGINPDVVTFNTLI 739 (790)
Q Consensus 677 ~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 739 (790)
+++|+..|++.++.. +-+...|..+..+|... |++++|.+.|++..+ +.|+...|...+
T Consensus 62 ~~eAi~~le~AL~ld--P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 62 IQEAITKFEEALLID--PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 346666666666542 22445555565555544 356666666666665 355554444333
No 206
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.003 Score=50.82 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=42.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003872 625 VNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 625 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..+|...|++++|++.++++++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455566666667777777777777666652 335666666666777777777777777776654
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.90 E-value=0.0043 Score=48.94 Aligned_cols=63 Identities=22% Similarity=0.113 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 660 DIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 660 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
+...+..+...|...|++++|+..|+++++.. +.+...|..+..+|...|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555555555543 2233445555555555555555555555544
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.90 E-value=0.012 Score=57.86 Aligned_cols=145 Identities=12% Similarity=-0.011 Sum_probs=95.0
Q ss_pred CCChhhHHHHHHHHH--hcC---CHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHH----hcC-C---HHHHHHHHHHHH
Q 003872 623 HPVNYTYNSMMSSFV--KKG---YFNQAWGVLNEMGEKFCPTD-IATYNVVIQGLG----KMG-R---ADLASTILDKLM 688 (790)
Q Consensus 623 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~----~~g-~---~~~A~~~~~~~~ 688 (790)
+.+...|...+++.. ..+ +..+|..+|++.++. .|+ ...|..+..+|. ..+ . .......++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 667778887776643 233 357788889988886 343 334433333332 111 1 111111222211
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 003872 689 KQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHV 768 (790)
Q Consensus 689 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 768 (790)
.....+.+..+|.++...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++..+. .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 111135678888888777777899999999999999864 78888888888999999999999999988865 56665
Q ss_pred chhHH
Q 003872 769 TDTTL 773 (790)
Q Consensus 769 t~~~l 773 (790)
||...
T Consensus 345 t~~~~ 349 (372)
T 3ly7_A 345 TLYWI 349 (372)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 65433
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.86 E-value=0.0055 Score=52.17 Aligned_cols=98 Identities=11% Similarity=-0.097 Sum_probs=70.5
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHHHHhccCCCCCcccccCCC
Q 003872 130 IKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQL----------GLAMSILFKLLEACNDNTADNSVVESLPG 199 (790)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (790)
.+.+.+++|++.++...+.. +.+...|..+..++...+++ ++|+..|++.++. .+.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l------------dP~~ 79 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------------DPKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------------CTTC
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh------------CcCc
Confidence 34566778888888887775 34777777777777777654 5999999999986 4556
Q ss_pred cchHHHHHHHHHhcc-----------chHHHHHHHHHHHhcCCCCCchhhHHHHH
Q 003872 200 CVACNELLVALRKSD-----------RRSEFKQVFERLKEQKEFEFDIYGYNICI 243 (790)
Q Consensus 200 ~~~~~~ll~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~li 243 (790)
..+|..+..+|...| ++++|++.|++..+ +.|+...|...+
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al 131 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 778889999998765 67777777777766 445554444433
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.50 E-value=0.042 Score=54.03 Aligned_cols=63 Identities=14% Similarity=-0.023 Sum_probs=28.1
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 235 DIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKG 299 (790)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 299 (790)
+...|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444443444444444444444444442 3444444444444444444444444444443
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.32 E-value=1.4e-06 Score=86.43 Aligned_cols=234 Identities=9% Similarity=0.093 Sum_probs=164.0
Q ss_pred cchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003872 82 HTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVL 161 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (790)
..+..|+.+.++..+.++..+|++.| +... |+..|..+|.+..+.|.+++-+..+....+.. .++.+=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSY--IKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSS--CCCS----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHH--HhCC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence 35688999999999999999888766 2222 45578899999999999999999987766543 3445557899
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHH
Q 003872 162 VSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNI 241 (790)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (790)
-+|++.++..+-.+.+ ..||..-...+..-+...|.++.|.-+|..+.. |..
T Consensus 124 ~ayAk~~rL~elEefl------------------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------~ak 175 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI------------------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGR 175 (624)
T ss_dssp HHHHTSCSSSTTTSTT------------------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC----------CTT
T ss_pred HHHHhhCcHHHHHHHH------------------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc----------HHH
Confidence 9999999877754333 567777788888889999999988777665443 445
Q ss_pred HHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003872 242 CIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYR 321 (790)
Q Consensus 242 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 321 (790)
|...+.+.|++..|.+.-++ .-++.||..+..+|...+++.-|.-.--.+.-. +| ....++..|-..|.
T Consensus 176 LAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~ 244 (624)
T 3lvg_A 176 LASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGY 244 (624)
T ss_dssp TSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCC
Confidence 55666777888777653322 237788999999999999888776655444422 11 22345666778888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003872 322 MDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLF 364 (790)
Q Consensus 322 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~ 364 (790)
+++.+.+++.-.... ......|+-|.-.|++- ++++..+-+
T Consensus 245 f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 245 FEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp CTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred HHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 888888887765321 24666777777766664 334443333
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.31 E-value=0.019 Score=59.19 Aligned_cols=112 Identities=10% Similarity=0.011 Sum_probs=66.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cC-CCCC-hHHHH
Q 003872 670 GLGKMGRADLASTILDKLMKQGG--GYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRT-----SG-INPD-VVTFN 736 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~~~~ 736 (790)
.+.+.|++++|+.++++.++... +.|+ ..+++.+..+|...|++++|+.+++++.. .| -.|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34456677777777776665321 1122 34666777777777777777777776663 11 1222 45677
Q ss_pred HHHHHHhccCCHHHHHHHHHHHH---hCCCCCCccc-hhHHHHHHHHHH
Q 003872 737 TLIEVNGKAGRLKEAHYFLKMML---DSGCTPNHVT-DTTLDFLGREID 781 (790)
Q Consensus 737 ~l~~~~~~~g~~~~A~~~~~~m~---~~~~~p~~~t-~~~l~~l~~~~~ 781 (790)
.|...|...|++++|+.++++.. +.-+.||+.. -.++..|..+..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 77777888888888877777754 2334555533 233344444443
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.12 E-value=0.016 Score=59.54 Aligned_cols=97 Identities=8% Similarity=-0.075 Sum_probs=70.0
Q ss_pred hcCCHHHHHHHHHHHHHhCC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCC-CCC-hHHHHHHH
Q 003872 673 KMGRADLASTILDKLMKQGG--GYLD----VVMYNTLINVLGKAGRFDEANMLFEQMRT-----SGI-NPD-VVTFNTLI 739 (790)
Q Consensus 673 ~~g~~~~A~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~-~~~~~~l~ 739 (790)
..|++++|+.++++.++... +.|+ ..+++.|..+|...|++++|..++++..+ .|- .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34788888888888766421 1222 35788888899999999999999988874 221 222 56788999
Q ss_pred HHHhccCCHHHHHHHHHHHHh---CCCCCCccc
Q 003872 740 EVNGKAGRLKEAHYFLKMMLD---SGCTPNHVT 769 (790)
Q Consensus 740 ~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~t 769 (790)
..|...|++++|+.++++..+ .-+.||+..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 999999999999999988752 335566543
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.03 E-value=0.087 Score=44.27 Aligned_cols=88 Identities=11% Similarity=0.061 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--ChHHHHHHHHHHhccCCHHHH
Q 003872 677 ADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAG---RFDEANMLFEQMRTSGINP--DVVTFNTLIEVNGKAGRLKEA 751 (790)
Q Consensus 677 ~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 751 (790)
...+.+-|.+....+ .++..+...+..++++++ +++++..++++..+.. .| +...+-.|.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 445556666655543 356666667777777776 5557777777777653 23 345555666677777888888
Q ss_pred HHHHHHHHhCCCCCCccc
Q 003872 752 HYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 752 ~~~~~~m~~~~~~p~~~t 769 (790)
.++++.+++. .|+..-
T Consensus 91 ~~y~~~lL~i--eP~n~Q 106 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQNNQ 106 (152)
T ss_dssp HHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHhc--CCCCHH
Confidence 8888777754 666544
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.87 E-value=0.022 Score=44.52 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=33.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003872 669 QGLGKMGRADLASTILDKLMKQGGGYLDVV-MYNTLINVLGKAGRFDEANMLFEQMRTS 726 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 726 (790)
..+...|++++|...++++++.. +.+.. .|..+..+|...|++++|...|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34555566666666666666552 23444 5556666666666666666666666653
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.83 E-value=0.39 Score=45.23 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCC--ChHHHHHHHHHHhcc-
Q 003872 677 ADLASTILDKLMKQGGGYLD---VVMYNTLINVLGKA-----GRFDEANMLFEQMRTSGINP--DVVTFNTLIEVNGKA- 745 (790)
Q Consensus 677 ~~~A~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~- 745 (790)
...|...++++++.. |+ ...|..+...|.+. |+.++|.+.|++..+. .| +..++..+.+.+++.
T Consensus 179 l~~A~a~lerAleLD---P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDLW---PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHC---TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhC---CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhc
Confidence 578888889888864 55 66888888889884 9999999999999985 45 477888899999885
Q ss_pred CCHHHHHHHHHHHHhCCCC
Q 003872 746 GRLKEAHYFLKMMLDSGCT 764 (790)
Q Consensus 746 g~~~~A~~~~~~m~~~~~~ 764 (790)
|+.++|.+.+++.+.....
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 9999999999999976544
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.78 E-value=0.59 Score=37.66 Aligned_cols=62 Identities=15% Similarity=0.035 Sum_probs=37.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCP 658 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 658 (790)
.-++.+...|+-++-.++...+.... +|++...-.+..+|.+.|+..+|.+++.++-+.|++
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34455556666666666666643322 556666666666666666666666666666666553
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.72 E-value=0.66 Score=52.73 Aligned_cols=76 Identities=12% Similarity=-0.050 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhc
Q 003872 380 NILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKY 459 (790)
Q Consensus 380 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 459 (790)
..++..+.+.|..+.|+++.+. .. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4455555556666666554421 10 1122334566666666664332 2556667777777777
Q ss_pred CCchHHHHHHHHHH
Q 003872 460 GRWDFTERLMKHIR 473 (790)
Q Consensus 460 g~~~~a~~~~~~~~ 473 (790)
|+++.|++.|.++.
T Consensus 695 ~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 695 FNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcc
Confidence 77777776666554
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.66 E-value=0.03 Score=57.70 Aligned_cols=93 Identities=11% Similarity=0.014 Sum_probs=71.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCCC-HHH
Q 003872 633 MSSFVKKGYFNQAWGVLNEMGEKF---CPTD----IATYNVVIQGLGKMGRADLASTILDKLMKQG-----GGYLD-VVM 699 (790)
Q Consensus 633 i~~~~~~g~~~~A~~~~~~m~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~p~-~~~ 699 (790)
+..+.+.|++++|+.++++.++.. +.|+ ..+++.+..+|...|++++|+.++++++... ..-|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667789999999999887541 2222 4578889999999999999999999876542 12233 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003872 700 YNTLINVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 700 ~~~li~~~~~~g~~~~A~~~~~~m~~ 725 (790)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999998874
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.59 E-value=0.042 Score=56.49 Aligned_cols=94 Identities=5% Similarity=-0.110 Sum_probs=60.3
Q ss_pred hcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhc----CC-CCCc-hhhH
Q 003872 166 RKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQ----KE-FEFD-IYGY 239 (790)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~-~~~~ 239 (790)
..|++++|+.++++.++........+ .+.-..+++.|...|...|++++|+.++++..+- .| -.|+ ..++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~----Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDS----NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTT----SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChh----chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 35788999999999888654322211 1112456777888888888888888887776541 11 2222 3556
Q ss_pred HHHHHHHhccCChHHHHHHHHHHH
Q 003872 240 NICIHAFGCWGDLHTSLRLFKEMK 263 (790)
Q Consensus 240 ~~li~~~~~~g~~~~a~~~~~~m~ 263 (790)
+.|...|...|++++|..++++..
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHH
Confidence 667777777777777777666654
No 221
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.57 E-value=4 Score=45.69 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 003872 156 VYDSVLVSLVRKKQLGLAMSILFKLL 181 (790)
Q Consensus 156 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 181 (790)
.|..+++++.+.++.+.+.++|.++.
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36777888888889999999998875
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.56 E-value=0.3 Score=55.64 Aligned_cols=104 Identities=11% Similarity=0.050 Sum_probs=54.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003872 240 NICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKS 319 (790)
Q Consensus 240 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 319 (790)
..++..+.+.|..+.|.++.+.-. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 455555566666666665442111 1123344556666666664332 3455666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 320 YRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRKVMEACQLFEKMVQD 370 (790)
Q Consensus 320 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~ 370 (790)
++++.|.+.|..+.+ |..+...+...++.+...++.+.....
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666666666665532 233334444455555544444444433
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.49 E-value=1 Score=38.84 Aligned_cols=130 Identities=14% Similarity=0.096 Sum_probs=94.7
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 003872 599 SIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRAD 678 (790)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 678 (790)
.....+|+++.|.++.+.+ .+...|..|.......|+++-|...|.+..+. ..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---------~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSF---------DKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---------HHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH---------HHHHHHHHHhCCHH
Confidence 4456789999999998766 36789999999999999999999999987653 34455567778888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003872 679 LASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMM 758 (790)
Q Consensus 679 ~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 758 (790)
.-.++-+....++ + ++.-..++...|+++++.++|.+.-. .|.. +-.....|.-+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g----~---~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE----D---FGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT----C---HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc----c---HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 8777776666554 2 45556667788999999999865432 2211 11222357778888888876
Q ss_pred H
Q 003872 759 L 759 (790)
Q Consensus 759 ~ 759 (790)
.
T Consensus 142 ~ 142 (177)
T 3mkq_B 142 E 142 (177)
T ss_dssp T
T ss_pred C
Confidence 3
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.21 E-value=0.14 Score=39.17 Aligned_cols=65 Identities=8% Similarity=-0.044 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003872 590 DIDMVNTFLSIFLAKGK---LNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK 655 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 655 (790)
++..+..+..++...++ .++|..++++..+.. +-++.....+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444455444433322 455555555555443 334444444555555555555555555555543
No 225
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.13 E-value=0.15 Score=39.51 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=34.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003872 633 MSSFVKKGYFNQAWGVLNEMGEKFCPTDIA-TYNVVIQGLGKMGRADLASTILDKLMKQG 691 (790)
Q Consensus 633 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 691 (790)
...+...|++++|+..++++.+.. +.+.. .+..+..+|...|++++|.+.|+++++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 334555666666666666666542 22445 56666666666666666666666666653
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.13 E-value=0.27 Score=40.59 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=60.4
Q ss_pred CCChhhHHHHHHHHHhcCCH------HHHHHHHHHHhhcCCCCCHH-HHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 003872 623 HPVNYTYNSMMSSFVKKGYF------NQAWGVLNEMGEKFCPTDIA-TYNVVIQ------GLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 623 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~~~~-~~~~li~------~~~~~g~~~~A~~~~~~~~~ 689 (790)
+-|..+|-..+....+.|++ ++.+++|++.... ++|+.. .|...+. .+...+|+++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45667777777777777777 6777777777665 555421 0001110 11233666666666666655
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003872 690 QGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGIN 729 (790)
Q Consensus 690 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 729 (790)
.. -+- ...|......-.+.|++..|++++.+....+.+
T Consensus 89 ~h-KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NC-KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HC-TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred Hh-HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 42 222 566666666666666677777766666665444
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.98 E-value=0.35 Score=36.97 Aligned_cols=65 Identities=12% Similarity=-0.048 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHh
Q 003872 152 LSPNVYDSVLVSLVRKKQ---LGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKE 228 (790)
Q Consensus 152 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 228 (790)
.++..+..+..++...++ .++|..+|++.++. .+.++.....+...+.+.|++++|+..|+.+.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~------------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL------------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666666666654443 56777777777665 344455555566666666666666666666665
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.92 E-value=0.26 Score=38.75 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 003872 698 VMYNTLINVLGKAGRFDEANMLFEQMRTS------GINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 698 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 769 (790)
.-+..|...+...|+++.|...|+...+. +-.+...++..|..++.+.|++++|+.++++..+. .|+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~~ 81 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHH
Confidence 33445566666666666666666665542 01234556677777777777777777777777643 555533
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.89 E-value=0.45 Score=39.32 Aligned_cols=115 Identities=11% Similarity=0.010 Sum_probs=82.4
Q ss_pred CCcchHHHHHHHHHHHHHcCCh------HHHHHHHHHHHhCCCCCChh-hHHHHHHH------HHhcCCHHHHHHHHHHH
Q 003872 586 MGTFDIDMVNTFLSIFLAKGKL------NLACKLFEIFTDMGVHPVNY-TYNSMMSS------FVKKGYFNQAWGVLNEM 652 (790)
Q Consensus 586 ~~~~~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~g~~~~~~-~~~~li~~------~~~~g~~~~A~~~~~~m 652 (790)
+.+.|++.|-.++...-+.|+. ++.+++|++.... ++|+.. .|...+.. +...++.++|.++|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4577999999999999999999 8888999988764 355431 22222221 23458999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 653 GEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLI 704 (790)
Q Consensus 653 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li 704 (790)
++.+-+- ..+|.....--.+.|++..|.+++...+..+ .+ +...+.+.+
T Consensus 87 ~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k-~~~~le~a~ 135 (161)
T 4h7y_A 87 RANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG-AV-PLEMLEIAL 135 (161)
T ss_dssp HHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CB-CHHHHHHHH
T ss_pred HHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CC-cHHHHHHHH
Confidence 8763333 6777777777789999999999999999875 33 444444444
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.83 E-value=0.17 Score=42.58 Aligned_cols=83 Identities=14% Similarity=0.015 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 003872 607 LNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKG---YFNQAWGVLNEMGEKFCPT--DIATYNVVIQGLGKMGRADLAS 681 (790)
Q Consensus 607 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~ 681 (790)
+..+.+-|.+..+.| .++..+...+.+++++.+ +.++++.++++..+.. .| ....+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 345566666666666 477788888888888887 5668888888888764 23 3445556666778889999999
Q ss_pred HHHHHHHHhC
Q 003872 682 TILDKLMKQG 691 (790)
Q Consensus 682 ~~~~~~~~~~ 691 (790)
+.++.+++..
T Consensus 92 ~y~~~lL~ie 101 (152)
T 1pc2_A 92 KYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9998888853
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.77 E-value=0.29 Score=38.47 Aligned_cols=66 Identities=17% Similarity=0.025 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003872 118 DSETFKLLLEPCIKSGKIDFAIEILDYMEELG------TSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEA 183 (790)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 183 (790)
+...+..+...+...|++..|..+|+...+.. ......++..|..++.+.|+++.|...++++++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45556667777777777777777777766541 1234566777777777888888888777777764
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.67 E-value=0.51 Score=44.42 Aligned_cols=105 Identities=15% Similarity=0.073 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc-
Q 003872 642 FNQAWGVLNEMGEKFCPTD---IATYNVVIQGLGK-----MGRADLASTILDKLMKQGGGYL--DVVMYNTLINVLGKA- 710 (790)
Q Consensus 642 ~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~- 710 (790)
...|...+++.++. .|+ -..|..+...|.+ -|+.++|.+.|++.++.. | +..++..+.+.++..
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln---P~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC---SAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC---CTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHhc
Confidence 34556666666654 344 3456666666766 377888888888877754 3 255556666767764
Q ss_pred CCHHHHHHHHHHHHhcCCC--CChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 711 GRFDEANMLFEQMRTSGIN--PDVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 711 g~~~~A~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
|+.++|.+.+++..+.... |+....+.+.. ++|..++++..
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q--------~eA~~LL~~~~ 296 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLVILSQ--------KRARWLKAHVQ 296 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHH--------HHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHHHHHH--------HHHHHHHHHhH
Confidence 7788888888877775444 55443333322 55555555443
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.59 E-value=2 Score=37.03 Aligned_cols=45 Identities=20% Similarity=0.131 Sum_probs=21.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 282 CVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEM 332 (790)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 332 (790)
...|+++.|.++.+++ .+...|..+.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3444555555444433 13444555555555555555554444443
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.58 E-value=0.31 Score=39.31 Aligned_cols=100 Identities=13% Similarity=0.071 Sum_probs=69.8
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCC--ChHHHHHHHHHHhccC
Q 003872 672 GKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDE---ANMLFEQMRTSGINP--DVVTFNTLIEVNGKAG 746 (790)
Q Consensus 672 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g 746 (790)
.....+..+.+-+.+....+ .++..+-..+..+++++.+..+ ++.+++.....+ .| .....-.|.-++.+.|
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhh
Confidence 33445566677777666654 3677777778888888877665 888888877653 23 3445556777899999
Q ss_pred CHHHHHHHHHHHHhCCCCCCccchhHHHHH
Q 003872 747 RLKEAHYFLKMMLDSGCTPNHVTDTTLDFL 776 (790)
Q Consensus 747 ~~~~A~~~~~~m~~~~~~p~~~t~~~l~~l 776 (790)
++++|.++++.+++. .|+..--..|..+
T Consensus 89 ~Y~~A~~~~~~lL~~--eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 89 EYEKALKYVRGLLQT--EPQNNQAKELERL 116 (126)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 999999999999865 7876554444333
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.81 E-value=0.43 Score=38.43 Aligned_cols=85 Identities=15% Similarity=0.044 Sum_probs=58.6
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHhhcCCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 003872 606 KLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQ---AWGVLNEMGEKFCP-TDIATYNVVIQGLGKMGRADLAS 681 (790)
Q Consensus 606 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~ 681 (790)
.+..+.+-|......| .++..+--.+.+++++..+... ++.++++..+.+.+ -.....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 4445555666555555 4777777778888888877665 88888888776411 13334455666788888888888
Q ss_pred HHHHHHHHhC
Q 003872 682 TILDKLMKQG 691 (790)
Q Consensus 682 ~~~~~~~~~~ 691 (790)
+.++.+++..
T Consensus 95 ~~~~~lL~~e 104 (126)
T 1nzn_A 95 KYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 8888888864
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.47 E-value=2.5 Score=34.13 Aligned_cols=67 Identities=16% Similarity=0.087 Sum_probs=36.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003872 270 DLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRMDDAMKIFSEMQYNGL 337 (790)
Q Consensus 270 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 337 (790)
+...+...++.+...|+-++..+++.++... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3444455555555566666665665554322 245555555555566666666666666655555554
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.45 E-value=0.00095 Score=66.73 Aligned_cols=218 Identities=10% Similarity=0.010 Sum_probs=138.2
Q ss_pred chhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003872 63 SSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEIL 142 (790)
Q Consensus 63 ~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 142 (790)
-..|+.-|-.+ .++..|..+|.+..+.|.+++....+.-.++..- ++..=+.|+-+|++.++..+-.+.+
T Consensus 70 v~eAIdsyIkA--------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl 139 (624)
T 3lvg_A 70 VKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI 139 (624)
T ss_dssp CTTTTTSSCCC--------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTT
T ss_pred hHHHHHHHHhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHH
Confidence 34466665443 3667888999999999999999999987666532 3344457899999999987765554
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHH
Q 003872 143 DYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQV 222 (790)
Q Consensus 143 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 222 (790)
. .|+..-...+..-|...|.++.|.-+|..+ .-|..|...+.+.|++..|.+.
T Consensus 140 ~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i--------------------sN~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 140 N-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------------SNFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp S-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS--------------------CCCTTTSSSSSSCSGGGSSTTT
T ss_pred c-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC--------------------ccHHHHHHHHHHHHHHHHHHHH
Confidence 2 255555677888888889988887665432 2344455556666776666443
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003872 223 FERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGH 302 (790)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 302 (790)
-++ .-++.||-.+-.+|...+++.-|.-.--.+.-. +.....++..|-..|-+++...+++.-....
T Consensus 193 ArK-------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE- 259 (624)
T 3lvg_A 193 ARK-------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE- 259 (624)
T ss_dssp TTT-------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-
T ss_pred HHh-------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence 222 225667777777777777776665443333311 1122334556667777777777777765332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003872 303 EPNEFTHRIIIQGCCKSYRMDDAMKIFSE 331 (790)
Q Consensus 303 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 331 (790)
......|+-|.-.|++- ++++..+.++.
T Consensus 260 rAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred chhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 34556677666666654 44444444433
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.26 E-value=1.4 Score=35.61 Aligned_cols=84 Identities=10% Similarity=-0.047 Sum_probs=62.0
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 003872 693 GYLDVVMYNTLINVLGKAGR---FDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVT 769 (790)
Q Consensus 693 ~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 769 (790)
..|+..+--.+..+++++.+ ..+++.+++...+.+..-....+-.|.-++.+.|++++|.++.+.+.+ +.|+..-
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~Q 113 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 113 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHH
Confidence 46777777778888888765 456888888888764222356677788899999999999999999985 4888766
Q ss_pred hhHHHHHHH
Q 003872 770 DTTLDFLGR 778 (790)
Q Consensus 770 ~~~l~~l~~ 778 (790)
-..|..++.
T Consensus 114 A~~Lk~~Ie 122 (134)
T 3o48_A 114 VGALKSMVE 122 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.85 E-value=4.6 Score=33.14 Aligned_cols=81 Identities=10% Similarity=-0.026 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccch
Q 003872 694 YLDVVMYNTLINVLGKAGR---FDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTD 770 (790)
Q Consensus 694 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 770 (790)
.|+..+--.+..++.++.+ ..+++.+++.+...+..-.....-.|.-++.+.|++++|.++.+.+++. .|+...-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHH
Confidence 4666666666777777654 4456777777766432223445556667788888888888888888754 7766554
Q ss_pred hHHHHH
Q 003872 771 TTLDFL 776 (790)
Q Consensus 771 ~~l~~l 776 (790)
..|..+
T Consensus 114 ~~Lk~~ 119 (144)
T 1y8m_A 114 GALKSM 119 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.10 E-value=3.4 Score=31.33 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=60.4
Q ss_pred chhhHHHHHHHHHhcCCcc--hHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003872 83 TACTYSHIFRTVCRAGFLE--EVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSV 160 (790)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~--~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (790)
+.+.|.+--..+...-+.+ ++.+-++++...+..|++.+..+.+++|.+.+++..|+++|+-++.. +.....+|..+
T Consensus 7 t~eeF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~ 85 (109)
T 1v54_E 7 TDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYV 85 (109)
T ss_dssp CHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHH
T ss_pred cHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHH
Confidence 4455666666666555443 56777888888999999999999999999999999999999988765 22334457666
Q ss_pred HHH
Q 003872 161 LVS 163 (790)
Q Consensus 161 l~~ 163 (790)
++-
T Consensus 86 lqE 88 (109)
T 1v54_E 86 IQE 88 (109)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.02 E-value=1.2 Score=48.74 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCCCChhh-H-HHHHHHHHhcCC-HHHHHHHHHHHhhc------CCCC-CH
Q 003872 593 MVNTFLSIFLAKGK-LNLACKLFEIFTDMGVHPVNYT-Y-NSMMSSFVKKGY-FNQAWGVLNEMGEK------FCPT-DI 661 (790)
Q Consensus 593 ~~~~li~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~-~-~~li~~~~~~g~-~~~A~~~~~~m~~~------~~~~-~~ 661 (790)
....++..+...++ .+.|..+|+.+.+.. |.... + .+++..+.+.++ --+|.+++.+..+. ..++ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 44556666666666 588999999998764 33322 2 334444434332 23455555554421 1111 21
Q ss_pred H----------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003872 662 A----------TYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMR 724 (790)
Q Consensus 662 ~----------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 724 (790)
. ....=..-|...|+++.|+++-++.... .+-+..+|..|..+|...|+++.|+-.+..+.
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1 1122233456789999999999999887 45568899999999999999999999888773
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.81 E-value=1.5 Score=47.95 Aligned_cols=128 Identities=16% Similarity=0.057 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhC-----CCCC-CH----
Q 003872 630 NSMMSSFVKKGY-FNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRA-DLASTILDKLMKQG-----GGYL-DV---- 697 (790)
Q Consensus 630 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~-----~~~p-~~---- 697 (790)
..|+..+...++ .+.|..+++++.+.....+......++..+...++- -+|.+++.+.++.. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555566 588999999998874322222233344444444332 24555555544210 0111 11
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003872 698 ------VMYNTLINVLGKAGRFDEANMLFEQMRTSGINP-DVVTFNTLIEVNGKAGRLKEAHYFLKMML 759 (790)
Q Consensus 698 ------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 759 (790)
.....=.+.|...|+++-|+++-++.... .| +..+|..|..+|.+.|+++.|+-.++.|.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222244566789999999999999875 45 59999999999999999999999999985
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.58 E-value=5.2 Score=30.34 Aligned_cols=71 Identities=11% Similarity=0.126 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhH-HHHHHHHHHhh
Q 003872 712 RFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTT-LDFLGREIDRL 783 (790)
Q Consensus 712 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-l~~l~~~~~~~ 783 (790)
+.=+.++-++.+....+.|++.+..+.+.+|.|.+++.-|.++++..+.+ ..+....|.. +.-+...+++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqElkPtl~EL 96 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNEL 96 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHHhhHHHHh
Confidence 44567777888888889999999999999999999999999999999754 3333444543 34455544443
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.27 E-value=32 Score=38.61 Aligned_cols=138 Identities=11% Similarity=0.052 Sum_probs=75.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH--HH
Q 003872 596 TFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYN--SMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQ--GL 671 (790)
Q Consensus 596 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~ 671 (790)
.+.-++.-.|+.+.+..+.+.+.... .|....-. ++.-+|+..|+......++..+.+. ++..+-...+- ++
T Consensus 529 algLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGl 604 (963)
T 4ady_A 529 AVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGF 604 (963)
T ss_dssp HHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHH
T ss_pred HHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHh
Confidence 33344456688888888887776542 33333322 2334567778887777788888764 23222222222 34
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 003872 672 GKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRF-DEANMLFEQMRTSGINPDVVTFNTLIEVN 742 (790)
Q Consensus 672 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 742 (790)
...|+.+.+.++++.+.+. ..|....-.++.-+....|+. .+|..++..+.. .++..+-...+.++
T Consensus 605 I~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 605 VLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp HTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 4567766667777655543 234444334444444444443 577778888874 34544443333333
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.14 E-value=4 Score=41.11 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCChHHHHHH
Q 003872 664 YNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRT-----SGINPDVVTFNTL 738 (790)
Q Consensus 664 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 738 (790)
...++..+...|+.++|...++.+.... +.+...|..++.++.+.|+..+|++.|+++.+ .|+.|...+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4456777888999999999999988874 56888999999999999999999999998764 5999998775544
Q ss_pred HHHHhc
Q 003872 739 IEVNGK 744 (790)
Q Consensus 739 ~~~~~~ 744 (790)
-..+..
T Consensus 252 ~~il~~ 257 (388)
T 2ff4_A 252 ERILRQ 257 (388)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 444433
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.12 E-value=5.9 Score=31.87 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=62.1
Q ss_pred cchhhHHHHHHHHHhcCCcc--hHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHH
Q 003872 82 HTACTYSHIFRTVCRAGFLE--EVPSLLNSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDS 159 (790)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~--~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (790)
.+.+.|.+-...+...-+.| +..+-++++...+..|++.+....+++|.+.+++..|+++|+-++.. +.+...+|..
T Consensus 49 Et~EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y 127 (152)
T 2y69_E 49 ETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPY 127 (152)
T ss_dssp CCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHH
T ss_pred CcHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHH
Confidence 45566776677777665544 46677778888899999999999999999999999999999988765 2334556766
Q ss_pred HHHH
Q 003872 160 VLVS 163 (790)
Q Consensus 160 ll~~ 163 (790)
+++-
T Consensus 128 ~lqE 131 (152)
T 2y69_E 128 VIQE 131 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.77 E-value=2.1 Score=43.18 Aligned_cols=74 Identities=14% Similarity=0.031 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHH-----hCCCCCCccchhHHH
Q 003872 700 YNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMML-----DSGCTPNHVTDTTLD 774 (790)
Q Consensus 700 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~t~~~l~ 774 (790)
...++.++...|++++|...+..+... -+.+...|..++.+|.+.|+..+|++.|+++. +.|+.|...+-.+..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 455677888999999999999998874 24467789999999999999999999999875 469999988755543
No 248
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.80 E-value=37 Score=36.41 Aligned_cols=20 Identities=10% Similarity=-0.097 Sum_probs=10.7
Q ss_pred HHHHcCChHHHHHHHHHHHh
Q 003872 600 IFLAKGKLNLACKLFEIFTD 619 (790)
Q Consensus 600 ~~~~~~~~~~a~~~~~~~~~ 619 (790)
.+...|....|...+..+..
T Consensus 390 ~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 390 ELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHCCChhhHHHHHHHHHh
Confidence 34455666666555555543
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.66 E-value=31 Score=35.36 Aligned_cols=61 Identities=8% Similarity=0.076 Sum_probs=35.4
Q ss_pred CChhHHHHHHHHHHHHhccCCCCCcccccCCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCC
Q 003872 168 KQLGLAMSILFKLLEACNDNTADNSVVESLPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEF 234 (790)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (790)
++++.|++.+..+.+....... ..........++..+...++++...+.+..+.++.|..+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d------~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk 90 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASD------LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK 90 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCS------TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH
T ss_pred CCHHHHHHHHHHHHHHhhhccc------hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH
Confidence 4566666665555443321110 222344566677778888888888777777766555433
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.15 E-value=9 Score=30.87 Aligned_cols=70 Identities=11% Similarity=0.129 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhH-HHHHHHHHHhh
Q 003872 713 FDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTT-LDFLGREIDRL 783 (790)
Q Consensus 713 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-l~~l~~~~~~~ 783 (790)
.=+..+-++.+....+.|++.+..+.+.+|.|.+++.-|.++++..+.+ ..+....|.. |.-+-..+++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqElkPtl~EL 139 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNEL 139 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHHhhHHHHh
Confidence 3356667777777889999999999999999999999999999999865 3444444653 35555554443
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.38 E-value=18 Score=30.65 Aligned_cols=133 Identities=9% Similarity=-0.017 Sum_probs=73.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH-
Q 003872 628 TYNSMMSSFVKKGYFNQAWGVLNEMGEK-FCPTDI-------ATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVV- 698 (790)
Q Consensus 628 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~- 698 (790)
++-.=+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...|++.+|...|++++.....-+...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444566677788888888777765443 123331 2556667778888888888888888765432222111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccchhHHHHHHH
Q 003872 699 MYNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTLDFLGR 778 (790)
Q Consensus 699 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l~~l~~ 778 (790)
+...+ ........ ......+...---+..+|...|++++|+.+++. +++-..|-.+-..|+|
T Consensus 102 ~~~~~----~~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~-----Ip~k~Rt~kvnm~Lak 163 (167)
T 3ffl_A 102 VRPST----GNSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG-----IPSRQRTPKINMLLAN 163 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT-----SCGGGCCHHHHHHHHH
T ss_pred ccccc----cccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhc-----CCchhcCHHHHHHHHH
Confidence 11111 00000000 001222334444577889999999999998765 4555556555555554
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.54 E-value=21 Score=41.99 Aligned_cols=151 Identities=17% Similarity=0.073 Sum_probs=101.8
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCC---------------
Q 003872 203 CNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGL--------------- 267 (790)
Q Consensus 203 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--------------- 267 (790)
...++..+...+.++-+.++...... +....-.+..+|...|++++|.+.|++... |+
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~ 887 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQE 887 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccc
Confidence 33466667777777777665544322 443444566677788888888888876421 11
Q ss_pred --------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003872 268 --------VPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNE----FTHRIIIQGCCKSYRMDDAMKIFSEMQYN 335 (790)
Q Consensus 268 --------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (790)
..-..-|..++..+-+.+.++.+.++-....+...+.+. ..|..+.+.+...+++++|...+-.+...
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 011234677888899999999988887766543212222 25788889999999999999999988876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003872 336 GLIPDTVVYNSLLNGMFKSRKVMEACQ 362 (790)
Q Consensus 336 ~~~p~~~~~~~li~~~~~~~~~~~a~~ 362 (790)
..+ ......|+..+|..+..+.-..
T Consensus 968 ~~r--~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 968 PLK--KSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp SSC--HHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHH--HHHHHHHHHHHHhCCChhhhhC
Confidence 443 4567778888888887766553
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.79 E-value=14 Score=29.91 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=46.7
Q ss_pred CCChhhHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003872 623 HPVNYTYNSMMSSFVKKGYF---NQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 623 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
.|+..+--.+.+++++..+. .+++.++++..+.+..-....+-.|.-|+.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 56666666677777776644 467788887776542223455566667788888888888888887774
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.93 E-value=26 Score=28.81 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=47.4
Q ss_pred CCChhhHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003872 623 HPVNYTYNSMMSSFVKKGYF---NQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 623 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
.|+..+--.+.+++.+..+. .+++.++++..+.+..-.....-.|.-++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 56666666677777776654 467788888777543333445556666788888888888888888874
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.64 E-value=12 Score=31.79 Aligned_cols=22 Identities=5% Similarity=0.098 Sum_probs=12.3
Q ss_pred HHHHHHhccchHHHHHHHHHHH
Q 003872 206 LLVALRKSDRRSEFKQVFERLK 227 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~~~~~ 227 (790)
+..+|.+.+++++|+.+++.+.
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHCCHHHHHHHHhcCC
Confidence 4555556666666665555443
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.29 E-value=63 Score=32.99 Aligned_cols=168 Identities=12% Similarity=0.065 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCCC--
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDM--GVHPV---NYTYNSMMSSFVKKGYFNQAWGVLNEMGE----KFCPTD-- 660 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~-- 660 (790)
.+...|...|...|++.+|..++..+... |.... ...+...++.|...+++..|..+++++.. ....|+
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 34567888899999999999999887532 22111 24566777888999999999999988642 222222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHH
Q 003872 661 IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNT----LINVLGKAGRFDEANMLFEQMRTSGINPDVVTFN 736 (790)
Q Consensus 661 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 736 (790)
...+...+..+...+++.+|.+.|.++.......-|...+.. ++.+..-++....-..+.........-++...|.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~ 297 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQE 297 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHH
Confidence 234566677778889999998888887654212223333322 2222233344444444555444443345567788
Q ss_pred HHHHHHhcc--CCHHHHHHHHHHHH
Q 003872 737 TLIEVNGKA--GRLKEAHYFLKMML 759 (790)
Q Consensus 737 ~l~~~~~~~--g~~~~A~~~~~~m~ 759 (790)
.++.+|... .+|+.+.+.++...
T Consensus 298 ~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 298 SLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHHHhchHhhhHHHHHHHHHHh
Confidence 888888765 34666666555443
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.02 E-value=52 Score=33.47 Aligned_cols=185 Identities=9% Similarity=-0.058 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCCCCHHHHH--H
Q 003872 594 VNTFLSIFLAKGKLNLACKLFEIFTDM--GVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK---FCPTDIATYN--V 666 (790)
Q Consensus 594 ~~~li~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~--~ 666 (790)
...+...|.+.|+++.|.+.|.++... +..--...+-.+++.+...+++..|...+.++... +..|+...-- .
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 456889999999999999999998764 22334566778888999999999999999887533 3223322111 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH-----HHHHHhcCCHHHHHHHHHHH--Hh-cCCCCChHHHHHH
Q 003872 667 VIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTL-----INVLGKAGRFDEANMLFEQM--RT-SGINPDVVTFNTL 738 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m--~~-~g~~p~~~~~~~l 738 (790)
-.-.+...+++..|.+.|-++.... ...+...+... +.+.....+.+.-.++++.- .. ....|....+..+
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e~~~t~-~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l 292 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVDSLATF-TSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSL 292 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHHHHHHS-CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHHhccC-CccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHH
Confidence 1112356789999999998877665 33333333222 22222222222222222211 11 1112333334445
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHH
Q 003872 739 IEVNGKAGRLKEAHYFLKMMLDSGCTPNHVTDTTLDFLGREI 780 (790)
Q Consensus 739 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l~~l~~~~ 780 (790)
+.++.. +++....+.+....+.-+..|......+..+.+..
T Consensus 293 ~~~~~~-~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~i 333 (429)
T 4b4t_R 293 TISLYA-SDYASYFPYLLETYANVLIPCKYLNRHADFFVREM 333 (429)
T ss_dssp HHHHHH-TCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHH
T ss_pred HHHHHh-ccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHH
Confidence 555444 34555555444444444555655544444444443
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.81 E-value=57 Score=31.20 Aligned_cols=81 Identities=10% Similarity=0.030 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCccCHHHHHH
Q 003872 375 SCWTHNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCRE---GQIEEALRLVEEMEGRGFVVDLVTISS 451 (790)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~ 451 (790)
++.....+...|.+.+++.+|...|-. |-.-+...+..++.-+... |...++ +...-.+
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHH
Confidence 667778888888888888888776631 1110344444444433333 333332 1111222
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 003872 452 LLIGFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 452 l~~~~~~~g~~~~a~~~~~~~~~ 474 (790)
+-.|...|+...|..+++...+
T Consensus 195 -VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 195 -VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp -HHHHHHTTBHHHHHHHHHHHHH
T ss_pred -HHHHHHhcCHHHHHHHHHHHHH
Confidence 2234566788888888876654
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.47 E-value=23 Score=36.05 Aligned_cols=99 Identities=12% Similarity=-0.090 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH-
Q 003872 627 YTYNSMMSSFVKKGYFNQAWGVLNEMGEKF--CPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTL- 703 (790)
Q Consensus 627 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l- 703 (790)
.++..+...|.+.|++++|.+.+.++...- ...-...+-.++..+...+++..+...++++.......+|....+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 467789999999999999999999998752 23345678888999999999999999999986543122333222221
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHh
Q 003872 704 ---INVLGKAGRFDEANMLFEQMRT 725 (790)
Q Consensus 704 ---i~~~~~~g~~~~A~~~~~~m~~ 725 (790)
.-.+...+++.+|.+.|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1123456899999998887765
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.44 E-value=60 Score=38.14 Aligned_cols=148 Identities=10% Similarity=0.022 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc----CC-------------
Q 003872 595 NTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEK----FC------------- 657 (790)
Q Consensus 595 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~------------- 657 (790)
..++..+...+..+.+.++..-. +.++...-.+..+|...|++++|...|.+.... ..
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34566677778887776654433 233344445667788899999999999875321 00
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003872 658 -----PTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD---VVMYNTLINVLGKAGRFDEANMLFEQMRTSGIN 729 (790)
Q Consensus 658 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 729 (790)
..-..-|..++..+.+.|.++.+.++-..+++..+..++ ...|..++..+...|++++|-..+-.+.....+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 011234677888888999999999998888876422211 125788899999999999999988888764333
Q ss_pred CChHHHHHHHHHHhccCCHH
Q 003872 730 PDVVTFNTLIEVNGKAGRLK 749 (790)
Q Consensus 730 p~~~~~~~l~~~~~~~g~~~ 749 (790)
......|+..++..|..+
T Consensus 971 --~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 971 --KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp --HHHHHHHHHHHHHHCCHH
T ss_pred --HHHHHHHHHHHHhCCChh
Confidence 455667777777666543
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.95 E-value=21 Score=33.10 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=23.9
Q ss_pred hcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003872 131 KSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLE 182 (790)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 182 (790)
+.|++++|++....-++.. +.|...-..|+..+|-.|+++.|..-++.+.+
T Consensus 9 ~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444455554444444432 23444444455555555555555544444443
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.01 E-value=27 Score=30.64 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 003872 657 CPTDIATYNVVIQGLGK--MGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDV 732 (790)
Q Consensus 657 ~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 732 (790)
.+.|+.-....+..--. .++...+..+|..|...+=..--...|......+-..|++.+|..+|+.-.+.+-.|-.
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 44565544444432222 44467788888888777623345566777777777888888888888888877666643
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.71 E-value=52 Score=28.93 Aligned_cols=57 Identities=14% Similarity=-0.057 Sum_probs=44.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 003872 639 KGYFNQAWGVLNEMGEKFCPTD-IATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLD 696 (790)
Q Consensus 639 ~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 696 (790)
.+...++..+|..|...|+.-. ...|......+...|++.+|.++|+.-++.+ -.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~-A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN-CRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CccH
Confidence 4557789999999988876544 4567778888888999999999999888876 5553
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.58 E-value=30 Score=26.16 Aligned_cols=12 Identities=17% Similarity=-0.141 Sum_probs=4.8
Q ss_pred hcCCHHHHHHHH
Q 003872 673 KMGRADLASTIL 684 (790)
Q Consensus 673 ~~g~~~~A~~~~ 684 (790)
+.|++++|..+.
T Consensus 52 NrG~Yq~Al~l~ 63 (116)
T 2p58_C 52 NRGDYASALQQG 63 (116)
T ss_dssp HTTCHHHHHHHH
T ss_pred cchhHHHHHHhc
Confidence 334444444333
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=68.20 E-value=24 Score=26.68 Aligned_cols=78 Identities=18% Similarity=0.120 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHH
Q 003872 675 GRADLASTILDKLMKQGGGYLDVVMY-NTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHY 753 (790)
Q Consensus 675 g~~~~A~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 753 (790)
..-++|..|-+-+...+ +..+. -+-+..+...|++++|..+.+.+. .||...|-+|.. .|.|..+.+..
T Consensus 21 H~HqEA~tIAdwL~~~~----~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG----EEEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC----cHHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 35677877777666554 32222 222344678899999999887664 899999987755 67888888888
Q ss_pred HHHHHHhCC
Q 003872 754 FLKMMLDSG 762 (790)
Q Consensus 754 ~~~~m~~~~ 762 (790)
.+.++-..|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 888887665
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.69 E-value=29 Score=26.19 Aligned_cols=11 Identities=27% Similarity=0.271 Sum_probs=4.5
Q ss_pred hcCCHHHHHHH
Q 003872 673 KMGRADLASTI 683 (790)
Q Consensus 673 ~~g~~~~A~~~ 683 (790)
+.|++++|..+
T Consensus 51 NrG~Yq~Al~l 61 (115)
T 2uwj_G 51 NQGRYQEALAF 61 (115)
T ss_dssp HTTCHHHHHGG
T ss_pred cchhHHHHHHh
Confidence 33444444433
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=64.15 E-value=24 Score=26.65 Aligned_cols=78 Identities=21% Similarity=0.091 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCCHHHHHH
Q 003872 675 GRADLASTILDKLMKQGGGYLDVVMY-NTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGRLKEAHY 753 (790)
Q Consensus 675 g~~~~A~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 753 (790)
..-++|..|-+-+...+ +..+. -+-+..+...|++++|..+.+.+. .||...|-+|.. .|.|..+.+..
T Consensus 20 H~HqEA~tIAdwL~~~~----~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG----QDEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC----cHHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 35677877777666554 32222 222344678899999999877664 899999977754 68899899988
Q ss_pred HHHHHHhCC
Q 003872 754 FLKMMLDSG 762 (790)
Q Consensus 754 ~~~~m~~~~ 762 (790)
.+.++-..|
T Consensus 90 rL~~la~sg 98 (115)
T 2uwj_G 90 RLAGLGGSS 98 (115)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHhCC
Confidence 888887665
No 268
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=61.02 E-value=98 Score=30.27 Aligned_cols=77 Identities=12% Similarity=0.121 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003872 379 HNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREG--QIEEALRLVEEMEGRGFVVDLVTISSLLIGF 456 (790)
Q Consensus 379 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 456 (790)
...++.-|...++.++|...++++....+. .......+..++-+.+ ..+.+..++..+...|+-........+...+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 567788888889999999998888643222 2333444444444433 3456788888888877665555444444443
No 269
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=58.45 E-value=1.3e+02 Score=28.93 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=50.6
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003872 589 FDIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVI 668 (790)
Q Consensus 589 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 668 (790)
-++.....+...|.+.+++.+|..-| + .|-.+++..|..++.-+.+.+...+ +|...-.+++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~--i--lg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL--V--LGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH--T--TSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH--H--hcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH
Confidence 36777778889999999999988776 2 2434455677666555544443221 2333333334
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 003872 669 QGLGKMGRADLASTILDKLMK 689 (790)
Q Consensus 669 ~~~~~~g~~~~A~~~~~~~~~ 689 (790)
. |.-.+++..|..+++...+
T Consensus 196 ~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 P-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H-HHHTTCHHHHHHHHHHHHH
T ss_pred H-HHHhCCHHHHHHHHHHHHH
Confidence 3 5556788888887666554
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.94 E-value=33 Score=31.81 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=78.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003872 634 SSFVKKGYFNQAWGVLNEMGEKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRF 713 (790)
Q Consensus 634 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 713 (790)
....+.|++++|+.....-++. -+-|...-..++..+|-.|++++|.+-++...+.. |+...-..+..-.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~---p~~~~~a~~yr~l------ 74 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF---PEYLPGASQLRHL------ 74 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---GGGHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---chhhHHHHHHHHH------
Confidence 4567889999999999988887 35588888899999999999999999998887753 5433222111111
Q ss_pred HHHHHHHHHHHhcCCCCC-----hHHHHHHHHHHh--ccCCHHHHHHHHHHHHhC
Q 003872 714 DEANMLFEQMRTSGINPD-----VVTFNTLIEVNG--KAGRLKEAHYFLKMMLDS 761 (790)
Q Consensus 714 ~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~ 761 (790)
=.|+..-.+...-+-.|. ..-...|+.++. ..|+.++|.++-.+..+.
T Consensus 75 I~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 75 VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 123344444444332222 223345555554 469999999999988653
No 271
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=57.90 E-value=1.3e+02 Score=28.68 Aligned_cols=82 Identities=16% Similarity=0.093 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003872 590 DIDMVNTFLSIFLAKGKLNLACKLFEIFTDMGVHPVNYTYNSMMSSFVKK---GYFNQAWGVLNEMGEKFCPTDIATYNV 666 (790)
Q Consensus 590 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~~~~~~~~~ 666 (790)
++.....+...|.+.+++.+|..-|- .|-.-+...+..++.-+... |...++- ...-.+
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHHH
Confidence 67788889999999999999887653 22112345555555544443 4433321 222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh
Q 003872 667 VIQGLGKMGRADLASTILDKLMKQ 690 (790)
Q Consensus 667 li~~~~~~g~~~~A~~~~~~~~~~ 690 (790)
++ .|.-.|+...|..+++...++
T Consensus 195 VL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 195 VF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HH-HHHHhcCHHHHHHHHHHHHHH
Confidence 23 245668888888888876543
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.49 E-value=93 Score=25.89 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 003872 715 EANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTP 765 (790)
Q Consensus 715 ~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 765 (790)
++..+|..|...|+--. ..-|......+-..|++++|.++++.-++.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 36777777777665443 5556677777777777777777777777776666
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.34 E-value=82 Score=26.64 Aligned_cols=52 Identities=10% Similarity=0.162 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 003872 716 ANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 716 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 767 (790)
+..+|..|...|+--. ..-|......+-..|++.+|.++++.-++.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4455565655554333 444555555555566666666666666655555543
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.05 E-value=99 Score=25.74 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003872 680 ASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD 731 (790)
Q Consensus 680 A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 731 (790)
+..+|..|..++=..--...|......+-..|++++|..+|+.-.+.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 6666766666652233455566666666777777777777777776666664
No 275
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=51.52 E-value=1e+02 Score=28.35 Aligned_cols=172 Identities=12% Similarity=0.121 Sum_probs=82.7
Q ss_pred CCCChHHHHHHhhcCCCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCC-cchHHHHHHHhhhCC-CCCCHHHH
Q 003872 45 IPISEPLVLQVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGF-LEEVPSLLNSMQEDD-VVVDSETF 122 (790)
Q Consensus 45 ~~~~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~l~~~~~~~~-~~~~~~~~ 122 (790)
..++++.+..+.............+|+......+....+...+..++..+...+. -..+..+|..+-..+ ...+..-|
T Consensus 72 ~~l~~e~l~~l~~~~~~s~~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef 151 (256)
T 2jul_A 72 VRHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDF 151 (256)
T ss_dssp ----CTHHHHHHHHTTSCHHHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHH
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHH
Confidence 3456667777776555555555555554433234444566666666655542222 234566676665432 23455566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHh-cCC-------hhHHHHHHHHHHHHhccCCCCCcc
Q 003872 123 KLLLEPCIKSGKIDFAIEILDYMEELG-TSLSPNVYDSVLVSLVR-KKQ-------LGLAMSILFKLLEACNDNTADNSV 193 (790)
Q Consensus 123 ~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~-~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 193 (790)
..++..+......++...+|+.+...+ ...+..-+..++..+.. .|. -......++.+......
T Consensus 152 ~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~------- 224 (256)
T 2jul_A 152 VVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDR------- 224 (256)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCC-------
Confidence 666666554444455666666554321 23455555555554432 131 01122223333332111
Q ss_pred cccCCCcchHHHHHHHHHhccchHHHHHHHHH
Q 003872 194 VESLPGCVACNELLVALRKSDRRSEFKQVFER 225 (790)
Q Consensus 194 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 225 (790)
......++..++..+.+....-++...|+.
T Consensus 225 --d~dG~Is~~Ef~~~~~~~~~l~~~l~~~d~ 254 (256)
T 2jul_A 225 --NQDGVVTIDEFLETCQKDENIMNSMQLFEN 254 (256)
T ss_dssp --STTCSBCHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred --CCCCcEeHHHHHHHHHhCHHHHHHHHhhcc
Confidence 122345666666666665555555555543
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=47.39 E-value=1.3e+02 Score=25.44 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 003872 680 ASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPDV 732 (790)
Q Consensus 680 A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 732 (790)
+..+|..|...+=..--...|......+-..|++.+|..+|..-.+.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 45566666655522334445566666666666666666666666666555543
No 277
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=45.86 E-value=1e+02 Score=26.28 Aligned_cols=87 Identities=10% Similarity=0.053 Sum_probs=46.1
Q ss_pred CCCCcchhhHHHHHHHHHhc-CCcchHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CCCCH
Q 003872 78 PIYKHTACTYSHIFRTVCRA-GFLEEVPSLLNSMQEDD-VVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELG-TSLSP 154 (790)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~-~~~~~a~~l~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 154 (790)
+....+...+..++..+... .....+..++..+-..+ ...+..-|..++.........+....+|+.+-..+ ...+.
T Consensus 32 ~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~ 111 (183)
T 1s6c_A 32 PSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINK 111 (183)
T ss_dssp TTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSCEEH
T ss_pred CCCcCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCeEcH
Confidence 33445666666666555433 23345566676665432 24466666666666555445556666776665432 23444
Q ss_pred HHHHHHHHHH
Q 003872 155 NVYDSVLVSL 164 (790)
Q Consensus 155 ~~~~~ll~~~ 164 (790)
.-+..++..+
T Consensus 112 ~e~~~~~~~~ 121 (183)
T 1s6c_A 112 EEMMDIVKAI 121 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455544443
No 278
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=45.04 E-value=2.2e+02 Score=27.45 Aligned_cols=25 Identities=12% Similarity=-0.019 Sum_probs=16.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHH
Q 003872 270 DLHTYNSLIQVLCVVGKVKDALIVW 294 (790)
Q Consensus 270 ~~~~~~~ll~~~~~~~~~~~a~~~~ 294 (790)
|+.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5556666667777777777766655
No 279
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=41.72 E-value=76 Score=30.30 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCccCHHHHH
Q 003872 379 HNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGITFSIVVLQLCREGQ--IEEALRLVEEMEGRGFVVDLVTIS 450 (790)
Q Consensus 379 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~ 450 (790)
...++.-|...|+.++|...++++....+. .......+..++-+.++ .+.+..++..+.+.|+-+......
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~ 241 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKR 241 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 455677777778888888888777532111 12223333334333322 455667777777666554444333
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=39.44 E-value=70 Score=29.72 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=9.4
Q ss_pred HHHHHHhccchHHHHHHH
Q 003872 206 LLVALRKSDRRSEFKQVF 223 (790)
Q Consensus 206 ll~~~~~~~~~~~a~~~~ 223 (790)
.+...++.|+.+.+..++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 444555666665444444
No 281
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=39.23 E-value=1.1e+02 Score=24.49 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCh
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGR--FDEANMLFEQMRTSGINPDV 732 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 732 (790)
....++.-|...|+.++|...++++.... + -......++..++-+.+. .+.+.+++..+...|+-+..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-F-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-G-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-c-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 34667788888888888888888864211 1 122334444445544432 35567777777766555443
No 282
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.23 E-value=3e+02 Score=26.82 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhh
Q 003872 87 YSHIFRTVCRAGFLEEVPSLLNSMQE 112 (790)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~l~~~~~~ 112 (790)
...+|.-|...++.++|...++++..
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 34677888889999999999988754
No 283
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=36.73 E-value=4.2e+02 Score=28.28 Aligned_cols=50 Identities=12% Similarity=-0.033 Sum_probs=29.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003872 668 IQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFE 721 (790)
Q Consensus 668 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 721 (790)
+..+...|....|...|..+... . +......+.......|.++.+.....
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~--~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS--K--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT--C--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhc--C--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 34466778888888888776654 2 33333344444456677776665443
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.18 E-value=1.1e+02 Score=24.65 Aligned_cols=63 Identities=10% Similarity=0.179 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 003872 310 RIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRK--VMEACQLFEKMVQDGVR 373 (790)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~l~~~~~~~~~~ 373 (790)
..++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4455556666666666666666542111 112233333333333321 34455566666555543
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.72 E-value=40 Score=30.41 Aligned_cols=18 Identities=6% Similarity=-0.235 Sum_probs=8.8
Q ss_pred HHHHhcCCchHHHHHHHH
Q 003872 454 IGFHKYGRWDFTERLMKH 471 (790)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~ 471 (790)
....+.|+.+.+..+++.
T Consensus 215 ~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 215 DLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHh
Confidence 334455555555444443
No 286
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.14 E-value=1.8e+02 Score=23.97 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=46.3
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhH
Q 003872 108 NSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGL 172 (790)
Q Consensus 108 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 172 (790)
+.+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..+....+..+...|-+..
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 345567766443 4445667777777888999999999988877888887788888888876544
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=32.89 E-value=49 Score=30.87 Aligned_cols=208 Identities=10% Similarity=0.037 Sum_probs=95.7
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHh---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHH
Q 003872 241 ICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLH---TYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNE---FTHRIIIQ 314 (790)
Q Consensus 241 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~ 314 (790)
..+...++.|+.+.+..++ +.|..++.. .-.+.+...+..|+.+-+..++ +.|..++. ...+ .+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t-~L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL----RHGADPVLRKKNGAT-PFL 77 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCC-HHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH----HcCCCCcccCCCCCC-HHH
Confidence 3455566778876555444 445443322 1123455666777765544444 44544332 1222 233
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------------HH
Q 003872 315 GCCKSYRMDDAMKIFSEMQYNGLIPDTV---VYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCW------------TH 379 (790)
Q Consensus 315 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~------------~~ 379 (790)
..+..|+.+ +++.+.+.|..++.. .++ .+...+..|+.+- ++.+.+.|..++.. .-
T Consensus 78 ~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~~~~~~~~~~g 148 (285)
T 1wdy_A 78 LAAIAGSVK----LLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKA----LKFLYKRGANVNLRRKTKEDQERLRKGG 148 (285)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHH----HHHHHHTTCCTTCCCCCCHHHHHTTCCC
T ss_pred HHHHcCCHH----HHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHH----HHHHHHhCCCcccccccHHHHHhhccCC
Confidence 344556654 444555566544321 122 2333455666543 44444444333211 01
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHH--HHHHHH
Q 003872 380 NILIDGLFRNGRAEAAYTLFCDLKKKGKFVD---GITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVT--ISSLLI 454 (790)
Q Consensus 380 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~ 454 (790)
...+...+..|+.+.+..+++. .|..++ ....+.+. ..+..+.......+++.+.+.|..++... -...+.
T Consensus 149 ~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 149 ATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 1234444556666544444332 133332 22223333 33445554445566667777776554321 112334
Q ss_pred HHHhcCCchHHHHHHH
Q 003872 455 GFHKYGRWDFTERLMK 470 (790)
Q Consensus 455 ~~~~~g~~~~a~~~~~ 470 (790)
..+..|+.+.+..+++
T Consensus 225 ~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 4455666655444443
No 288
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=32.59 E-value=1.1e+02 Score=23.02 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHhccCC
Q 003872 716 ANMLFEQMRTSGINPDVVTFNTLIEVNGKAGR 747 (790)
Q Consensus 716 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 747 (790)
|.++.+++...|+.|+..+...++..|...+-
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 56677777777888888888888888877765
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.58 E-value=1.5e+02 Score=26.54 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 003872 714 DEANMLFEQMRTSGINPD-VVTFNTLIEVNGKAGRLKEAHYFLKMMLDSGCTPN 766 (790)
Q Consensus 714 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 766 (790)
+++..+|..|...|+--. ..-|......+-..|++.+|.++++.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 466677777777666544 55667777777777888888888887777766773
No 290
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=31.96 E-value=1.4e+02 Score=26.64 Aligned_cols=22 Identities=5% Similarity=0.049 Sum_probs=11.6
Q ss_pred HHHHHhccchHHHHHHHHHHHh
Q 003872 207 LVALRKSDRRSEFKQVFERLKE 228 (790)
Q Consensus 207 l~~~~~~~~~~~a~~~~~~~~~ 228 (790)
+...++.|+.+.+..+++.+.+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQ 34 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 3344555666655555554443
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.29 E-value=1.1e+02 Score=25.49 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCChHH
Q 003872 663 TYNVVIQGLGKMGRADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGR--FDEANMLFEQMRTSGINPDVVT 734 (790)
Q Consensus 663 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~ 734 (790)
..+.++.-|...|+.++|...++++.... + -......++..++-+.++ .+.+.+++..+...|+-+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-F-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-G-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-c-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 45678888888999999999998874221 1 123344445555555332 4567777888877665554433
No 292
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.37 E-value=1.8e+02 Score=23.85 Aligned_cols=64 Identities=16% Similarity=0.072 Sum_probs=46.5
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhH
Q 003872 108 NSMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGL 172 (790)
Q Consensus 108 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 172 (790)
+.+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..+....+..+...|-+..
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 3455677765553 334566666667788899999999888877788887778888888876544
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.14 E-value=94 Score=25.92 Aligned_cols=63 Identities=10% Similarity=0.180 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCC
Q 003872 309 HRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRK--VMEACQLFEKMVQDGV 372 (790)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~l~~~~~~~~~ 372 (790)
...++.-|...++.++|.+.++++..... ....+...+..++-+.++ .+.+..++..+...|+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 34455556566666666666666532110 112223333333333222 3345555555555544
No 294
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=28.93 E-value=3.1e+02 Score=24.40 Aligned_cols=120 Identities=10% Similarity=0.041 Sum_probs=63.5
Q ss_pred CCCChHHHHHHhhcCCCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhcCCc-chHHHHHHHhhhCC-CCCCHHHH
Q 003872 45 IPISEPLVLQVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAGFL-EEVPSLLNSMQEDD-VVVDSETF 122 (790)
Q Consensus 45 ~~~~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~l~~~~~~~~-~~~~~~~~ 122 (790)
.+++++.+..+.............+++.-....++...+...+..++..+...+.. ..+..+++.+-..+ ...+..-|
T Consensus 45 ~~~~~~~l~~l~~~~~~s~~ei~~l~~~F~~~d~~G~Is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~d~~G~I~~~Ef 124 (229)
T 3dd4_A 45 VRHRPEALELLEAQSKFTKKELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDF 124 (229)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCCCHHHHHHHHHHHSCSSSHHHHHHHHHHTTCSSCCSSCCHHHH
T ss_pred ccCCHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCCCcHHHHHHHHHHcCCCCCCeEeHHHH
Confidence 34556666665554333333333333332223454556666666666655333322 23445666554432 34577777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhC-CCCCHHHHHHHHHHH
Q 003872 123 KLLLEPCIKSGKIDFAIEILDYMEELG-TSLSPNVYDSVLVSL 164 (790)
Q Consensus 123 ~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~ 164 (790)
..++..+.+....+....+|+.+-..| ...+..-+..++..+
T Consensus 125 ~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~ 167 (229)
T 3dd4_A 125 IKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAI 167 (229)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHCTTCSSCCBHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHhCCCCCCeECHHHHHHHHHHH
Confidence 777777666555566777777665432 245665566666554
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=28.92 E-value=1.3e+02 Score=27.01 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=23.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHhcCCHHH
Q 003872 243 IHAFGCWGDLHTSLRLFKEMKEKGLVPDLHT--YNSLIQVLCVVGKVKD 289 (790)
Q Consensus 243 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~ 289 (790)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 61 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH
Confidence 3444555777766666666655554433211 1123344444555543
No 296
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=28.69 E-value=1.2e+02 Score=28.49 Aligned_cols=142 Identities=11% Similarity=-0.026 Sum_probs=59.9
Q ss_pred HHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhc
Q 003872 243 IHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGKVKDALIVWEELKGSGHEPNE---FTHRIIIQGCCKS 319 (790)
Q Consensus 243 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~ 319 (790)
+...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+..++ +.|..++. .-++. +...+..
T Consensus 35 L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t~-L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNTA-LYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCcH-HHHHHHc
Confidence 344455677665544443 343333222233445555666665444443 33433332 12222 3333455
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 003872 320 YRMDDAMKIFSEMQYNGLIPDTV---VYNSLLNGMFKSRKVMEACQLFEKMVQDGVRT-SCWTHNILIDGLFRNGRAEAA 395 (790)
Q Consensus 320 ~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a 395 (790)
|+.+-+..+++ .|..++.. -+...+...+..|+.+- .+.+.+.|..+ +...-...+...+..|+.+-+
T Consensus 106 g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 66554433333 34333221 11233344445555443 33333333222 110223344445566666655
Q ss_pred HHHHHH
Q 003872 396 YTLFCD 401 (790)
Q Consensus 396 ~~~~~~ 401 (790)
..+++.
T Consensus 178 ~~Ll~~ 183 (285)
T 3kea_A 178 ILLLDY 183 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 555544
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.61 E-value=2.6e+02 Score=25.29 Aligned_cols=45 Identities=16% Similarity=0.080 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 003872 427 IEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRWDFTERLMKHIRD 474 (790)
Q Consensus 427 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (790)
-..+..+.+++.. .++.......+..+.+.|+.++|.++|=+...
T Consensus 75 ~~L~~~L~~~l~~---~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 75 EAISSKLSQSILS---SNEIVHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHHHHHHT---CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 3344444444422 33556666667777778888888877766543
No 298
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.08 E-value=4.2e+02 Score=25.59 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=11.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 003872 345 NSLLNGMFKSRKVMEACQLFEKM 367 (790)
Q Consensus 345 ~~li~~~~~~~~~~~a~~l~~~~ 367 (790)
..++.-|...|+.++|.+.++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 34445555555555555555444
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.93 E-value=3.1e+02 Score=24.81 Aligned_cols=28 Identities=25% Similarity=0.152 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003872 340 DTVVYNSLLNGMFKSRKVMEACQLFEKM 367 (790)
Q Consensus 340 ~~~~~~~li~~~~~~~~~~~a~~l~~~~ 367 (790)
+.......+..+.+.|+.++|.++|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 4444555556666666666666665444
No 300
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.23 E-value=54 Score=21.37 Aligned_cols=38 Identities=11% Similarity=0.278 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHhccCC--HHHHHHHHHHHH
Q 003872 717 NMLFEQMRTSGINPDVVTFNTLIEVNGKAGR--LKEAHYFLKMML 759 (790)
Q Consensus 717 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~ 759 (790)
.+.++++.+.|+.++. ...++...|. ++.|++++.+|-
T Consensus 10 ~qmlq~L~eMGFd~er-----ae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 10 RQMLQELVNAGCDQEM-----AGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHHCCHHH-----HHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHH-----HHHHHHHhCcccHHHHHHHHHHhc
Confidence 4556677777777653 3346666666 888888888884
No 301
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=27.22 E-value=1.1e+02 Score=27.21 Aligned_cols=206 Identities=12% Similarity=0.056 Sum_probs=91.1
Q ss_pred HHHHhccchHHHHHHHHHHHhcCCCCCchh--hHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhH---HHHHHHHHH
Q 003872 208 VALRKSDRRSEFKQVFERLKEQKEFEFDIY--GYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHT---YNSLIQVLC 282 (790)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~ 282 (790)
...++.|+.+.+..+++ .|..++.. .-.+.+...+..|+.+-+.. +.+.|..++... -...+...+
T Consensus 14 ~~A~~~g~~~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~~~~t~L~~A~ 84 (240)
T 3eu9_A 14 VKATQYGIYERCRELVE-----AGYDVRQPDKENVTLLHWAAINNRIDLVKY----YISKGAIVDQLGGDLNSTPLHWAT 84 (240)
T ss_dssp HHHHHTTCHHHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCBTTTTBCHHHHHH
T ss_pred HHHHHcCChHHHHHHHH-----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHH----HHHcCCcchhhcCCcCCChhHHHH
Confidence 34566777666555544 33333221 11234555666777765444 444444332211 123445556
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCC
Q 003872 283 VVGKVKDALIVWEELKGSGHEPNE---FTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDT---VVYNSLLNGMFKSRK 356 (790)
Q Consensus 283 ~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~ 356 (790)
..|+.+-+..++ +.|..++. ...+ .+...+..|+.+ +++.+.+.|..++. ...+.+..+... +.
T Consensus 85 ~~~~~~~v~~Ll----~~g~~~~~~~~~g~t-~l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~ 154 (240)
T 3eu9_A 85 RQGHLSMVVQLM----KYGADPSLIDGEGCS-CIHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYR-TH 154 (240)
T ss_dssp HHTCHHHHHHHH----HTTCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CC
T ss_pred HcCCHHHHHHHH----HcCCCCcccCCCCCC-HHHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHh-CC
Confidence 667766544443 44444432 2222 334445556655 44444455544432 222333333323 33
Q ss_pred HHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh--HHHHHHHHHHcCCHHHHH
Q 003872 357 VMEACQLFEKMVQDGVRTSCW---THNILIDGLFRNGRAEAAYTLFCDLKKKGKFVDGIT--FSIVVLQLCREGQIEEAL 431 (790)
Q Consensus 357 ~~~a~~l~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~ 431 (790)
.....++ +.+.|..++.. .-...+...+..|+.+-+..++ +.|..++... -.+.+....+.|+.+-+.
T Consensus 155 ~~~~~~~---L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~ 227 (240)
T 3eu9_A 155 SVDPTRL---LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL----EAGANVDAQNIKGESALDLAKQRKNVWMIN 227 (240)
T ss_dssp SSTTHHH---HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHH----HHTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred hHHHHHH---HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 2223333 33333332211 1123345555667766444443 3344433211 112344456677777666
Q ss_pred HHHHHHHh
Q 003872 432 RLVEEMEG 439 (790)
Q Consensus 432 ~~~~~m~~ 439 (790)
.+++...+
T Consensus 228 ~L~~~~~~ 235 (240)
T 3eu9_A 228 HLQEARQA 235 (240)
T ss_dssp HHHHHC--
T ss_pred HHHHhhhc
Confidence 66554433
No 302
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.19 E-value=1.6e+02 Score=26.37 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003872 678 DLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD 731 (790)
Q Consensus 678 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 731 (790)
+.+..+|..|...+=..--...|......+-..|++.+|..+|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 355566666666652233455566666666677777777777777776655653
No 303
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.93 E-value=26 Score=32.49 Aligned_cols=24 Identities=8% Similarity=-0.145 Sum_probs=11.6
Q ss_pred hccCChHHHHHHHHHHHHCCCCCC
Q 003872 247 GCWGDLHTSLRLFKEMKEKGLVPD 270 (790)
Q Consensus 247 ~~~g~~~~a~~~~~~m~~~g~~p~ 270 (790)
++.|+.+....+++.+.+.|..++
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcc
Confidence 344555555555555444443333
No 304
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.73 E-value=2e+02 Score=23.59 Aligned_cols=60 Identities=18% Similarity=0.125 Sum_probs=34.4
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCc
Q 003872 402 LKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRW 462 (790)
Q Consensus 402 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 462 (790)
+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|..--+..+...|-+
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 44455554432 2234444444555556666777776666666666666666777766654
No 305
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.23 E-value=2.7e+02 Score=23.82 Aligned_cols=92 Identities=8% Similarity=-0.035 Sum_probs=43.0
Q ss_pred HHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhH---HHHHHHHHHh-cC
Q 003872 210 LRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHT---YNSLIQVLCV-VG 285 (790)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~-~~ 285 (790)
.++.|+.+....++..-. ...+...-.+.+...+..|+.+.-.++.+.+.+.|..++... .+.|..++.. ..
T Consensus 13 Aa~~g~~~~~~~l~~~~~----~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEKGY----EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHHSS----SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhcCc----ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 345677766555543211 111101112344455556666665666777777776655322 1222222211 22
Q ss_pred CHHHHHHHHHHHHhCCCCCC
Q 003872 286 KVKDALIVWEELKGSGHEPN 305 (790)
Q Consensus 286 ~~~~a~~~~~~~~~~g~~~~ 305 (790)
+.....++.+.+.+.|..++
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSS
T ss_pred chhhHHHHHHHHHHCCCCCC
Confidence 33444555666666665544
No 306
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=26.14 E-value=2.5e+02 Score=23.87 Aligned_cols=52 Identities=13% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCC-----------------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003872 670 GLGKMGRADLASTILDKLMKQGGGYLD-----------------VVMYNTLINVLGKAGRFDEANMLFEQ 722 (790)
Q Consensus 670 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-----------------~~~~~~li~~~~~~g~~~~A~~~~~~ 722 (790)
+|-+.+++..|...++.+++.. +.-| ...|+-+...|...|+.++|.+.+..
T Consensus 71 Cy~klKdYkkA~~~le~il~~k-vd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGK-VERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-SBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-cccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
No 307
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.06 E-value=3.2e+02 Score=26.43 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=16.8
Q ss_pred HHHHHHHHhccchHHHHHHHHHHH
Q 003872 204 NELLVALRKSDRRSEFKQVFERLK 227 (790)
Q Consensus 204 ~~ll~~~~~~~~~~~a~~~~~~~~ 227 (790)
..++.-|...|+.++|...++.+.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 446667777778887777776664
No 308
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=25.55 E-value=2.4e+02 Score=26.20 Aligned_cols=144 Identities=10% Similarity=-0.043 Sum_probs=73.6
Q ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHhc
Q 003872 207 LVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHT--YNSLIQVLCVV 284 (790)
Q Consensus 207 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~ 284 (790)
+...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+..+ .+.|..++... -.+.+...+..
T Consensus 35 L~~A~~~g~~~~v~~Ll~-----~g~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN-----AGALKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNTALYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH-----TTGGGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHh-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcHHHHHHHc
Confidence 444556777765555444 34333332223445566677887655444 44565544321 12334555677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 003872 285 GKVKDALIVWEELKGSGHEPNE---FTHRIIIQGCCKSYRMDDAMKIFSEMQYNGLIPDTV-VYNSLLNGMFKSRKVMEA 360 (790)
Q Consensus 285 ~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a 360 (790)
|+.+-+..+++. |..++. .-+.+.+...+..|+.+ +++.+.+.|..+... .-...+...+..|..+-+
T Consensus 106 g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 887766655554 333332 22234455555667765 444444555433111 223344555677887766
Q ss_pred HHHHHHH
Q 003872 361 CQLFEKM 367 (790)
Q Consensus 361 ~~l~~~~ 367 (790)
.-+++.-
T Consensus 178 ~~Ll~~g 184 (285)
T 3kea_A 178 ILLLDYM 184 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 6666553
No 309
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.48 E-value=5.4e+02 Score=26.02 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=36.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCC
Q 003872 318 KSYRMDDAMKIFSEMQYNGLIPDTVVYNSLLNGMFKSRK-----VMEACQLFEKMVQDGV 372 (790)
Q Consensus 318 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-----~~~a~~l~~~~~~~~~ 372 (790)
+..+.+.|+.++.+|.+.|..|....-..++.+....|. ...|...++....-|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 457888899999999888876665555555555555453 3345556666666664
No 310
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=25.35 E-value=3.2e+02 Score=23.41 Aligned_cols=174 Identities=13% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCCCCccccc
Q 003872 117 VDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGLAMSILFKLLEACNDNTADNSVVES 196 (790)
Q Consensus 117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 196 (790)
++...-...+..+...+.......+.+.+.. ++..+-...+.++...+..+....+...+ .
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~~~~~~~~L~~~l---------------~ 86 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKD----EDAWVRRAAADALGQIGDERAVEPLIKAL---------------K 86 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCCGGGHHHHHHHT---------------T
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcC----CCHHHHHHHHHHHHhhCCHHHHHHHHHHH---------------c
Q ss_pred CCCcchHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 003872 197 LPGCVACNELLVALRKSDRRSEFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEKGLVPDLHTYNS 276 (790)
Q Consensus 197 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 276 (790)
.++...-...+.++.+.+..+....+...+... +...-...+.++.+.++.+....+...+.+. +..+-..
T Consensus 87 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~----~~~vr~~ 157 (201)
T 3ltj_A 87 DEDGWVRQSAAVALGQIGDERAVEPLIKALKDE-----DWFVRIAAAFALGEIGDERAVEPLIKALKDE----DGWVRQS 157 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHTCGGGHHHHHHHTTCS----SHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC----CHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEFTHRIIIQGCCKSYRM 322 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 322 (790)
.+.++...|..+....+...+. .++...-...+.++.+.+..
T Consensus 158 A~~aL~~~~~~~~~~~L~~~l~----d~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 158 AADALGEIGGERVRAAMEKLAE----TGTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHHHHHHHCSHHHHHHHHHHHH----HCCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHhCchhHHHHHHHHHh----CCCHHHHHHHHHHHHHHHhh
No 311
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=25.24 E-value=3.6e+02 Score=23.88 Aligned_cols=121 Identities=9% Similarity=0.024 Sum_probs=61.0
Q ss_pred CCCCChHHHHHHhhcCCCCchhhhhhhhhhhcCCCCCCcchhhHHHHHHHHHhc-CCcchHHHHHHHhhhCC-CCCCHHH
Q 003872 44 SIPISEPLVLQVLGKNSLDSSKKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRA-GFLEEVPSLLNSMQEDD-VVVDSET 121 (790)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~l~~~~~~~~-~~~~~~~ 121 (790)
...+++..+..+.............+|+......++...+...+..++..+... .....+..+|+.+-..+ ...+..-
T Consensus 31 ~~~l~~~~l~~l~~~~~~s~~ei~~l~~~Fd~~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~f~~~D~d~~G~I~~~E 110 (224)
T 1s1e_A 31 MVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFED 110 (224)
T ss_dssp -------CHHHHHHHSSCCHHHHHHHHHHHHHHCTTSCBCHHHHHHHHHTTCTTSCCHHHHHHHHHHHCTTCSSCBCHHH
T ss_pred ccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHhcCCCCCcEeHHH
Confidence 345666667777766555555544555444332244445555555555444322 22345566776665432 3456677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhC-CCCCHHHHHHHHHHH
Q 003872 122 FKLLLEPCIKSGKIDFAIEILDYMEELG-TSLSPNVYDSVLVSL 164 (790)
Q Consensus 122 ~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~ 164 (790)
|..++.........++...+|+.+-..+ ...+..-+..++..+
T Consensus 111 f~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~ 154 (224)
T 1s1e_A 111 FVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAI 154 (224)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHcCCCCCeECHHHHHHHHHHH
Confidence 7777766665555556666776664432 234555555555443
No 312
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=25.17 E-value=4.3e+02 Score=24.87 Aligned_cols=88 Identities=10% Similarity=-0.002 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-C----------CCCHHHHHHHHHHHH
Q 003872 641 YFNQAWGVLNEMG-EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQGG-G----------YLDVVMYNTLINVLG 708 (790)
Q Consensus 641 ~~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~----------~p~~~~~~~li~~~~ 708 (790)
..++...++.... +.|+..+......++... .|++..+..+++.+....+ + .+.......++...
T Consensus 170 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~--~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~- 246 (327)
T 1iqp_A 170 RDEDIAKRLRYIAENEGLELTEEGLQAILYIA--EGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLA- 246 (327)
T ss_dssp CHHHHHHHHHHHHHTTTCEECHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCSEECHHHHHHHTTCCCHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHH-
Confidence 3456666666554 345556666666665533 6899999988887764321 0 11122233344433
Q ss_pred hcCCHHHHHHHHHHHH-hcCCCCC
Q 003872 709 KAGRFDEANMLFEQMR-TSGINPD 731 (790)
Q Consensus 709 ~~g~~~~A~~~~~~m~-~~g~~p~ 731 (790)
..|++++|.+.+..+. ..|..|.
T Consensus 247 ~~~~~~~~~~~~~~ll~~~g~~~~ 270 (327)
T 1iqp_A 247 LKGNFLKAREKLREILLKQGLSGE 270 (327)
T ss_dssp HHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred HcCCHHHHHHHHHHHHHHcCCCHH
Confidence 3367888888888777 6665543
No 313
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.91 E-value=3.5e+02 Score=23.65 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=11.2
Q ss_pred cCChHHHHHHHHHHHHCC
Q 003872 249 WGDLHTSLRLFKEMKEKG 266 (790)
Q Consensus 249 ~g~~~~a~~~~~~m~~~g 266 (790)
..|.+.|+-.+.+|.+.|
T Consensus 27 GSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG 44 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 356666666666666666
No 314
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=24.58 E-value=5.2e+02 Score=25.57 Aligned_cols=62 Identities=10% Similarity=-0.067 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCChhhHHH----HHHHHH-hcCCHHHHHHHHHHHh
Q 003872 592 DMVNTFLSIFLAKGKLNLACKLFEIFTDM--GVHPVNYTYNS----MMSSFV-KKGYFNQAWGVLNEMG 653 (790)
Q Consensus 592 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~----li~~~~-~~g~~~~A~~~~~~m~ 653 (790)
.++..-+..|...+++.++...+...... .+.+++..-.. -.-.+. ..+++..|...|-+..
T Consensus 140 ev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 140 EVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 34555667777778888887777665332 11233322211 112344 6778888877766654
No 315
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.12 E-value=2e+02 Score=20.50 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=40.4
Q ss_pred hhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChh
Q 003872 110 MQEDDVVVDSETFKLLLEPCIKSG-KIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLG 171 (790)
Q Consensus 110 ~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 171 (790)
+.+.|...+..- ..++..+...+ ..-.+.++++.+.+.+...+..+....+..+...|-+.
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 455666655543 34555555554 56678888888877766677777777777777776543
No 316
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.99 E-value=4.8e+02 Score=24.94 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCCCCHH----------HHHHH
Q 003872 642 FNQAWGVLNEMG-EKFCPTDIATYNVVIQGLGKMGRADLASTILDKLMKQG-------GGYLDVV----------MYNTL 703 (790)
Q Consensus 642 ~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~p~~~----------~~~~l 703 (790)
.++...++.... +.++..+......++.. ..|++..+..+++.+.... .+.++.+ ....+
T Consensus 194 ~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~--~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l 271 (353)
T 1sxj_D 194 ASNAIDRLRFISEQENVKCDDGVLERILDI--SAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEI 271 (353)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHH--TSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhCCCCHHHHHHH
Confidence 345555555443 34555666665555543 2378888887776654221 1222111 11222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 003872 704 INVLGKAGRFDEANMLFEQMRTSGINPDV 732 (790)
Q Consensus 704 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 732 (790)
+..+ ..++.+.|..++.++...|..|..
T Consensus 272 ~~~~-~~~~~~~a~~~l~~l~~~g~~~~~ 299 (353)
T 1sxj_D 272 VEKV-KSGDFDEIKKYVNTFMKSGWSAAS 299 (353)
T ss_dssp HHHH-HSCCHHHHHHHHHHHHHTSCCCTT
T ss_pred HHHH-hcCCHHHHHHHHHHHHHhCCCHHH
Confidence 2222 345666666666666666665543
No 317
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.35 E-value=1.6e+02 Score=24.76 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCC
Q 003872 218 EFKQVFERLKEQKEFEFDIYGYNICIHAFGCWGDLHTSLRLFKEMKEK--GLVPDLHTYNSLIQVLCVVGK 286 (790)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~ 286 (790)
.+.+-+....+..|++++. .-..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-
T Consensus 15 ~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3344444444435555543 2334455555555566666677766665 555555554445555555553
No 318
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.30 E-value=1.8e+02 Score=24.00 Aligned_cols=60 Identities=17% Similarity=0.105 Sum_probs=33.4
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCc
Q 003872 402 LKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRW 462 (790)
Q Consensus 402 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 462 (790)
+.+.|..++. .-..++..+...+..-.|.++++.+.+.+...+..|..--+..+...|-+
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 4445554332 23334455555555556666777766666566666666666677766654
No 319
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.12 E-value=34 Score=31.64 Aligned_cols=188 Identities=8% Similarity=-0.025 Sum_probs=92.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHH--hcCCHHHHHHHHHHHHHCC---------CC
Q 003872 277 LIQVLCVVGKVKDALIVWEELKGSGHEPNEF-------THRIIIQGCC--KSYRMDDAMKIFSEMQYNG---------LI 338 (790)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~li~~~~--~~~~~~~a~~~~~~m~~~~---------~~ 338 (790)
.+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 3455667899998888888777666555533 2344444432 5677776666666544321 00
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHHHHcCCHHHHHHHHHH
Q 003872 339 -PDTVVYNSLLNGMFKSRKVMEACQLFEKMVQDGVRTSCWT----------------HNILIDGLFRNGRAEAAYTLFCD 401 (790)
Q Consensus 339 -p~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~----------------~~~li~~~~~~~~~~~a~~~~~~ 401 (790)
.|..-.+ .+...+..|+.+-+. .+.+.|..++... -.+.+...+..|+.+-+ +.
T Consensus 88 ~~d~~g~t-~L~~A~~~g~~~~v~----~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v----~~ 158 (260)
T 3jxi_A 88 DVYYRGQT-ALHIAIERRCKHYVE----LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV----HY 158 (260)
T ss_dssp CSSEESBC-HHHHHHHTTCHHHHH----HHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHH----HH
T ss_pred ccccCCCC-HHHHHHHcCCHHHHH----HHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHH----HH
Confidence 0101122 233445667765444 4444554443321 22344555667775544 44
Q ss_pred HHh---CCCCCC---HhhHHHHHHHHHHcC-C---HHHHHHHHHHHHhCCCcc----------CHHHHHHHHHHHHhcCC
Q 003872 402 LKK---KGKFVD---GITFSIVVLQLCREG-Q---IEEALRLVEEMEGRGFVV----------DLVTISSLLIGFHKYGR 461 (790)
Q Consensus 402 ~~~---~~~~~~---~~~~~~ll~~~~~~g-~---~~~a~~~~~~m~~~~~~~----------~~~~~~~l~~~~~~~g~ 461 (790)
+.+ .|..++ ..-.+.|..++.... . .+...++++.+.+.|..+ +..-.+ -+...++.|+
T Consensus 159 Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~t-pL~~A~~~g~ 237 (260)
T 3jxi_A 159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS-PLMMAAKTGK 237 (260)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC-HHHHHHHTTC
T ss_pred HHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCC-HHHHHHHcCC
Confidence 445 444433 223344444433222 1 222234444444443222 212222 3444566788
Q ss_pred chHHHHHHHHHHh
Q 003872 462 WDFTERLMKHIRD 474 (790)
Q Consensus 462 ~~~a~~~~~~~~~ 474 (790)
.+.+..++++-..
T Consensus 238 ~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 238 IGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC
Confidence 7777777666543
No 320
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.95 E-value=2.1e+02 Score=23.12 Aligned_cols=62 Identities=11% Similarity=0.029 Sum_probs=44.0
Q ss_pred hhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhH
Q 003872 110 MQEDDVVVDSETFKLLLEPCIKSG-KIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGL 172 (790)
Q Consensus 110 ~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 172 (790)
+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..+....+..+...|-+.+
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 45567665553 334566666666 788899999999988877888887777788887776543
No 321
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.87 E-value=2e+02 Score=20.40 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=10.8
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 003872 432 RLVEEMEGRGFVVDLVTISSLLIGFHKYG 460 (790)
Q Consensus 432 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 460 (790)
++++.+.+.+...+..|....+..+...|
T Consensus 38 el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 38 DLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33333333333333333333333333333
No 322
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.66 E-value=1.7e+02 Score=23.99 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=32.2
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCc
Q 003872 402 LKKKGKFVDGITFSIVVLQLCREGQIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRW 462 (790)
Q Consensus 402 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 462 (790)
+.+.|..++.. -..++..+...+ .-.|.++++.+.+.+...+..|..--+..+...|-+
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34445554432 223334444444 445666666666666666666666666666666654
No 323
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=22.56 E-value=69 Score=21.52 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=20.8
Q ss_pred ccchHHHHHHHHHHHhcCCCCCchh
Q 003872 213 SDRRSEFKQVFERLKEQKEFEFDIY 237 (790)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (790)
.-+++.|...|..+.....+||+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4688999999999987678888765
No 324
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.51 E-value=2e+02 Score=23.23 Aligned_cols=60 Identities=22% Similarity=0.128 Sum_probs=32.0
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCc
Q 003872 402 LKKKGKFVDGITFSIVVLQLCREG-QIEEALRLVEEMEGRGFVVDLVTISSLLIGFHKYGRW 462 (790)
Q Consensus 402 ~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 462 (790)
+.+.|..++.. -..++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|-+
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34445543332 223344444443 4455666666666666566666666666666666654
No 325
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.30 E-value=5e+02 Score=26.82 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-CCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003872 119 SETFKLLLEPCIKSGKIDFAIEILDYMEELGT-SLSPN---VYDSVLVSLVRKKQLGLAMSILFKLLEA 183 (790)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 183 (790)
...++.+++.|...+.++.|..+..+..--.. ..+.. -+-.+.+.+.-.+++.+|.+.|..+++.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46789999999999999999999988742110 11111 1344567778889999999999888764
No 326
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.25 E-value=1.6e+02 Score=25.25 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=8.6
Q ss_pred HHHhcCCcchHHHHHH
Q 003872 93 TVCRAGFLEEVPSLLN 108 (790)
Q Consensus 93 ~~~~~~~~~~a~~l~~ 108 (790)
..+..|+.+.+..++.
T Consensus 11 ~A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 11 EAANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHHTTCHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHH
Confidence 3344566665555554
No 327
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.66 E-value=4e+02 Score=23.24 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHhcc---CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003872 242 CIHAFGCW---GDLHTSLRLFKEMKEKGLVPDLHTYNSLIQVLCVVGK-----VKDALIVWEELKGSGHEPNEFTHRIII 313 (790)
Q Consensus 242 li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~~~~~~~~~~li 313 (790)
+|+++.+. .|.+.|+-.+.+|.+.|-.|....-..++-+.-.-|. +..|...++.....|.+--.......+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 89 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAI 89 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 003872 314 QGCCKSYRMDDAMKIFSEMQY 334 (790)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~m~~ 334 (790)
-.++.+-+-..+...++...+
T Consensus 90 iyLA~aPKSNs~y~A~~~A~~ 110 (201)
T 3bge_A 90 IYLSVAPKSNAVYTAFNTAKQ 110 (201)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 328
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.37 E-value=1.5e+02 Score=24.89 Aligned_cols=62 Identities=8% Similarity=0.016 Sum_probs=47.3
Q ss_pred hhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCChhH
Q 003872 110 MQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEEL--GTSLSPNVYDSVLVSLVRKKQLGL 172 (790)
Q Consensus 110 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~ 172 (790)
+.+.|.+++. .-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-+.+
T Consensus 24 L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 24 LRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4456777655 3455677777778889999999999988 777788887777888888886644
No 329
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.85 E-value=5.4e+02 Score=24.37 Aligned_cols=67 Identities=16% Similarity=0.240 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCC--HHHHHHHHHHHHhCCCCCCc
Q 003872 700 YNTLINVLGKAGRFDEANMLFEQMRTSGINPDVVTFNTLIEVNGKAGR--LKEAHYFLKMMLDSGCTPNH 767 (790)
Q Consensus 700 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~ 767 (790)
...++.-|...|+.++|.+.++++....+.+ ..+...+..++-+.++ .+....++..+.+.|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 4467777888899999999998885322221 2344455566666543 34566777777766554433
No 330
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.74 E-value=2.1e+02 Score=23.57 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=45.3
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhH
Q 003872 109 SMQEDDVVVDSETFKLLLEPCIKSG-KIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGL 172 (790)
Q Consensus 109 ~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 172 (790)
.+.+.|..++..= ..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|-+..
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 3556777666543 34555555565 678899999999988877888887777888888876544
No 331
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=20.69 E-value=5.2e+02 Score=24.14 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------------hHHHHHHHHHHh
Q 003872 676 RADLASTILDKLMKQGGGYLDVVMYNTLINVLGKAGRFDEANMLFEQMRTSGINPD------------VVTFNTLIEVNG 743 (790)
Q Consensus 676 ~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------------~~~~~~l~~~~~ 743 (790)
..++..+++.......|...+......+. ....|++.++...++.+...+-..+ ......++++..
T Consensus 162 ~~~~~~~~l~~~~~~~~~~i~~~~l~~l~--~~~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~ 239 (319)
T 2chq_A 162 PKEAMKKRLLEICEKEGVKITEDGLEALI--YISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTAL 239 (319)
T ss_dssp CHHHHHHHHHHHHHTTCCCBCHHHHHHHH--HTTTTCHHHHHHHHHHHHHSSSCBCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_pred ccCCHHHHHHHHHHHHh-CCCCCCccchhHHHHH
Q 003872 744 KAGRLKEAHYFLKMMLD-SGCTPNHVTDTTLDFL 776 (790)
Q Consensus 744 ~~g~~~~A~~~~~~m~~-~~~~p~~~t~~~l~~l 776 (790)
. |+.++|.+++.++.. .|..|......+...+
T Consensus 240 ~-~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~ 272 (319)
T 2chq_A 240 K-GNFMEARELLDRLMVEYGMSGEDIVAQLFREI 272 (319)
T ss_dssp H-TCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred h-CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
No 332
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.50 E-value=2.1e+02 Score=23.50 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=41.9
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhH
Q 003872 109 SMQEDDVVVDSETFKLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKKQLGL 172 (790)
Q Consensus 109 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 172 (790)
.+.+.|.+++..- ..++..+...+ .-.|.++++.+.+.+...+..+....+..+...|-+.+
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 3455666655532 33455555556 77899999999888777788777777777777776543
No 333
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=20.47 E-value=87 Score=21.53 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 003872 123 KLLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRK 167 (790)
Q Consensus 123 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 167 (790)
+.++..++.-.-.++++-.+++....| ..+.+.|-.-.+.+++.
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444443 23444444444444443
No 334
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.38 E-value=3.7e+02 Score=22.59 Aligned_cols=62 Identities=10% Similarity=-0.025 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHhhhCCCCC--CHHHHHHHHH-H-----HHhcCChHHHHHHHHHHHHh
Q 003872 86 TYSHIFRTVCRAGFLEEVPSLLNSMQEDDVVV--DSETFKLLLE-P-----CIKSGKIDFAIEILDYMEEL 148 (790)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~~~ 148 (790)
.|...+..+ ..|+|-+|-++|+..-.....+ ....|..||+ . ..+.|+...|..++.+....
T Consensus 35 ~~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344444444 4499999999999988765555 4566777777 2 23579999999999888763
No 335
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.07 E-value=1.7e+02 Score=23.49 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Q 003872 124 LLLEPCIKSGKIDFAIEILDYMEELGTSLSPNVYDSVLVSLVRKK 168 (790)
Q Consensus 124 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 168 (790)
.++..+...+..-.|.++++.+.+.+...+..+....+..+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Done!