Your job contains 1 sequence.
>003873
MPQDIRKWFLKPHSKDKDNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQ
KPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKADDDDDDFVPPSVKKNSVGATPSKK
LKSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGF
MNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVS
KKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAA
SLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVG
NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM
LGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDE
VDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK
RLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAK
DEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKR
LSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFN
RFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPK
DELLRKLLSS
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003873
(790 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:504956441 - symbol:RFC1 "replication factor C1... 2446 4.7e-254 1
DICTYBASE|DDB_G0285961 - symbol:rfc1 "replication factor ... 656 4.7e-87 3
FB|FBgn0004913 - symbol:Gnf1 "Germ line transcription fac... 579 2.0e-82 2
SGD|S000005743 - symbol:RFC1 "Subunit of heteropentameric... 710 1.2e-73 2
UNIPROTKB|E1C339 - symbol:RFC1 "Uncharacterized protein" ... 702 1.9e-71 2
UNIPROTKB|F1NEP9 - symbol:RFC1 "Uncharacterized protein" ... 697 6.4e-71 2
MGI|MGI:97891 - symbol:Rfc1 "replication factor C (activa... 649 9.9e-67 2
UNIPROTKB|F1S4I7 - symbol:RFC1 "Uncharacterized protein" ... 663 1.6e-66 2
ZFIN|ZDB-GENE-070410-99 - symbol:rfc1 "replication factor... 655 2.2e-66 2
UNIPROTKB|P35251 - symbol:RFC1 "Replication factor C subu... 654 1.5e-65 2
GENEDB_PFALCIPARUM|PFB0895c - symbol:PFB0895c "replicatio... 621 4.3e-63 2
UNIPROTKB|O96271 - symbol:PFB0895c "Replication factor C ... 621 4.3e-63 2
UNIPROTKB|E2QW76 - symbol:RFC1 "Uncharacterized protein" ... 628 1.1e-62 2
ASPGD|ASPL0000007447 - symbol:uvsF species:162425 "Emeric... 613 1.2e-61 2
RGD|620619 - symbol:Rfc1 "replication factor C (activator... 557 2.8e-55 2
POMBASE|SPBC23E6.07c - symbol:rfc1 "DNA replication facto... 517 1.8e-47 1
WB|WBGene00004337 - symbol:rfc-1 species:6239 "Caenorhabd... 492 2.4e-46 2
UNIPROTKB|F1N4T1 - symbol:LOC514842 "Uncharacterized prot... 435 2.3e-40 1
UNIPROTKB|H9L0H0 - symbol:H9L0H0 "Uncharacterized protein... 406 3.6e-37 1
ASPGD|ASPL0000006457 - symbol:AN6694 species:162425 "Emer... 231 2.0e-15 1
WB|WBGene00010676 - symbol:K08F4.1 species:6239 "Caenorha... 211 2.4e-13 1
SGD|S000004683 - symbol:CTF18 "Subunit of a Ctf18 RFC-lik... 144 4.5e-13 2
ZFIN|ZDB-GENE-070912-20 - symbol:atad5a "ATPase family, A... 136 1.7e-12 4
POMBASE|SPBC902.02c - symbol:ctf18 "RFC-like complex subu... 203 2.1e-12 1
TIGR_CMR|CHY_1100 - symbol:CHY_1100 "DNA ligase, NAD-depe... 195 8.8e-12 1
DICTYBASE|DDB_G0272758 - symbol:chtf18 "chromosome transm... 118 1.0e-11 3
UNIPROTKB|G4NIT3 - symbol:MGG_04123 "Chromosome transmiss... 202 1.7e-11 2
SGD|S000005454 - symbol:RFC4 "Subunit of heteropentameric... 157 1.9e-11 2
CGD|CAL0000922 - symbol:RFC4 species:5476 "Candida albica... 151 2.2e-11 2
ZFIN|ZDB-GENE-050306-29 - symbol:rfc2 "replication factor... 147 3.3e-11 2
TAIR|locus:2204705 - symbol:AT1G77620 species:3702 "Arabi... 140 4.2e-10 3
UNIPROTKB|P63973 - symbol:ligA "DNA ligase" species:1773 ... 179 5.1e-10 1
UNIPROTKB|Q05B83 - symbol:RFC2 "Replication factor C subu... 131 5.6e-10 2
UNIPROTKB|P35250 - symbol:RFC2 "Replication factor C subu... 132 5.6e-10 2
CGD|CAL0003295 - symbol:CTF18 species:5476 "Candida albic... 153 7.5e-10 2
RGD|621198 - symbol:Rfc2 "replication factor C (activator... 130 2.9e-09 2
MGI|MGI:1341868 - symbol:Rfc2 "replication factor C (acti... 129 3.8e-09 2
FB|FBgn0260985 - symbol:RfC4 "Replication factor C subuni... 133 4.4e-09 2
GENEDB_PFALCIPARUM|PFL2005w - symbol:PFL2005w "replicatio... 162 8.8e-09 1
UNIPROTKB|Q8I512 - symbol:PFL2005w "Replication factor C ... 162 8.8e-09 1
POMBASE|SPAC1687.03c - symbol:rfc4 "DNA replication facto... 136 9.7e-09 2
UNIPROTKB|E2QSU1 - symbol:RFC2 "Uncharacterized protein" ... 121 1.6e-08 2
UNIPROTKB|P53033 - symbol:RFC2 "Replication factor C subu... 132 2.1e-08 2
WB|WBGene00004338 - symbol:rfc-2 species:6239 "Caenorhabd... 126 2.2e-08 2
UNIPROTKB|F6ULR2 - symbol:RFC2 "Uncharacterized protein" ... 121 2.7e-08 2
TIGR_CMR|CBU_0542 - symbol:CBU_0542 "DNA ligase, NAD-depe... 163 2.7e-08 1
WB|WBGene00004340 - symbol:rfc-4 species:6239 "Caenorhabd... 126 3.6e-08 2
UNIPROTKB|P53016 - symbol:rfc-4 "Replication factor C sub... 126 3.6e-08 2
GENEDB_PFALCIPARUM|PFA0545c - symbol:PFA0545c "replicatio... 170 1.3e-07 2
UNIPROTKB|Q8I233 - symbol:PFA_0545c "Replication factor c... 170 1.3e-07 2
UNIPROTKB|F1NJA2 - symbol:F1NJA2 "Uncharacterized protein... 129 1.7e-07 2
TAIR|locus:2015233 - symbol:RFC2 "replication factor C 2"... 129 1.8e-07 2
FB|FBgn0015376 - symbol:cutlet "cutlet" species:7227 "Dro... 143 2.2e-07 2
UNIPROTKB|F1RG33 - symbol:CHTF18 "Uncharacterized protein... 156 2.5e-07 1
TIGR_CMR|CJE_0689 - symbol:CJE_0689 "DNA ligase, NAD-depe... 153 3.1e-07 1
TIGR_CMR|GSU_0890 - symbol:GSU_0890 "DNA ligase, NAD-depe... 152 4.1e-07 1
UNIPROTKB|Q96QE3 - symbol:ATAD5 "ATPase family AAA domain... 135 5.2e-07 4
DICTYBASE|DDB_G0291868 - symbol:rfc2 "replication factor ... 120 5.7e-07 2
GENEDB_PFALCIPARUM|PF14_0601 - symbol:PF14_0601 "replicat... 121 7.5e-07 2
UNIPROTKB|Q8IKK4 - symbol:PF14_0601 "Replication factor C... 121 7.5e-07 2
TIGR_CMR|DET_0596 - symbol:DET_0596 "DNA ligase, NAD-depe... 149 8.9e-07 1
ZFIN|ZDB-GENE-030131-338 - symbol:atad5b "ATPase family, ... 128 1.2e-06 2
UNIPROTKB|Q8WVB6 - symbol:CHTF18 "Chromosome transmission... 148 1.9e-06 1
TIGR_CMR|NSE_0500 - symbol:NSE_0500 "DNA ligase, NAD-depe... 145 2.4e-06 1
UNIPROTKB|F1NIY0 - symbol:RFC4 "Uncharacterized protein" ... 114 3.3e-06 2
UNIPROTKB|F1NEW1 - symbol:RFC4 "Uncharacterized protein" ... 114 3.4e-06 2
ZFIN|ZDB-GENE-050522-508 - symbol:chtf18 "CTF18, chromoso... 160 4.4e-06 3
TAIR|locus:2204710 - symbol:RFC3 "replication factor C su... 117 8.7e-06 2
UNIPROTKB|E1B8Q4 - symbol:CHTF18 "Uncharacterized protein... 141 1.9e-05 2
RGD|1310473 - symbol:Chtf18 "CTF18, chromosome transmissi... 138 2.2e-05 1
MGI|MGI:2384887 - symbol:Chtf18 "CTF18, chromosome transm... 138 2.2e-05 1
UNIPROTKB|I3LC39 - symbol:CHTF18 "Uncharacterized protein... 138 2.3e-05 1
TIGR_CMR|SO_2896 - symbol:SO_2896 "DNA ligase, NAD-depend... 146 2.4e-05 2
UNIPROTKB|D4A058 - symbol:Atad5 "Protein Atad5" species:1... 142 3.1e-05 2
RGD|1309515 - symbol:Rad17 "RAD17 homolog (S. pombe)" spe... 114 3.3e-05 2
UNIPROTKB|E9PTL1 - symbol:Rad17 "Protein Rad17" species:1... 114 3.3e-05 2
ASPGD|ASPL0000017750 - symbol:AN8064 species:162425 "Emer... 130 4.5e-05 1
UNIPROTKB|I3LHX6 - symbol:RFC2 "Uncharacterized protein" ... 127 5.2e-05 1
MGI|MGI:1333807 - symbol:Rad17 "RAD17 homolog (S. pombe)"... 116 5.8e-05 3
ASPGD|ASPL0000063791 - symbol:AN10917 species:162425 "Eme... 82 7.2e-05 3
MGI|MGI:2442925 - symbol:Atad5 "ATPase family, AAA domain... 134 0.00010 2
ZFIN|ZDB-GENE-040824-3 - symbol:rfc4 "replication factor ... 103 0.00010 2
UNIPROTKB|E1BPL7 - symbol:RAD17 "Uncharacterized protein"... 113 0.00011 3
UNIPROTKB|E7EXA6 - symbol:CHTF18 "Chromosome transmission... 132 0.00012 1
UNIPROTKB|E1BCE1 - symbol:ATAD5 "Uncharacterized protein"... 124 0.00014 3
TAIR|locus:2180315 - symbol:EMB2775 "EMBRYO DEFECTIVE 277... 123 0.00021 1
UNIPROTKB|E2RCC4 - symbol:ATAD5 "Uncharacterized protein"... 126 0.00024 2
GENEDB_PFALCIPARUM|PFB0840w - symbol:PFB0840w "replicatio... 108 0.00024 2
UNIPROTKB|O96260 - symbol:PFB0840w "Replication factor C,... 108 0.00024 2
UNIPROTKB|F1NTX9 - symbol:RAD17 "Uncharacterized protein"... 103 0.00025 2
UNIPROTKB|F1NC53 - symbol:RAD17 "Uncharacterized protein"... 103 0.00025 2
UNIPROTKB|F1PFW9 - symbol:CHTF18 "Uncharacterized protein... 131 0.00039 2
UNIPROTKB|I3L290 - symbol:RAD17 "Cell cycle checkpoint pr... 105 0.00040 3
UNIPROTKB|O75943 - symbol:RAD17 "Cell cycle checkpoint pr... 105 0.00040 3
UNIPROTKB|P09122 - symbol:dnaX "DNA polymerase III subuni... 123 0.00045 1
SGD|S000003829 - symbol:RFC2 "Subunit of heteropentameric... 120 0.00045 1
UNIPROTKB|F1SFI3 - symbol:RFC4 "Uncharacterized protein" ... 120 0.00048 1
UNIPROTKB|Q9KTD1 - symbol:ligA "DNA ligase" species:24327... 123 0.00057 1
TIGR_CMR|VC_0971 - symbol:VC_0971 "DNA ligase" species:68... 123 0.00057 1
FB|FBgn0030871 - symbol:CG8142 species:7227 "Drosophila m... 119 0.00058 1
WARNING: Descriptions of 1 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:504956441 [details] [associations]
symbol:RFC1 "replication factor C1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0031935
"regulation of chromatin silencing" evidence=IMP] [GO:0051570
"regulation of histone H3-K9 methylation" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0007126
"meiosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR010372 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF06144 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0009737 GO:GO:0007126 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006260 GO:GO:0006974 GO:GO:0051570
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
GO:GO:0003887 EMBL:AL589883 HSSP:P26996 GO:GO:0009360
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 eggNOG:COG5275 OMA:KLRMDER
GO:GO:0031935 EMBL:BT014965 IPI:IPI00543426 RefSeq:NP_680188.1
UniGene:At.45635 ProteinModelPortal:Q9C587 SMR:Q9C587 STRING:Q9C587
PaxDb:Q9C587 PRIDE:Q9C587 EnsemblPlants:AT5G22010.1 GeneID:832261
KEGG:ath:AT5G22010 TAIR:At5g22010 HOGENOM:HOG000085054
InParanoid:Q9C587 PhylomeDB:Q9C587 ProtClustDB:CLSN2690182
Genevestigator:Q9C587 Uniprot:Q9C587
Length = 956
Score = 2446 (866.1 bits), Expect = 4.7e-254, P = 4.7e-254
Identities = 502/793 (63%), Positives = 580/793 (73%)
Query: 4 DIRKWFLKPHSKDKDNATIPANTA-----LSNLETT---NSEPGCGGHESMGRRKTSKYF 55
DIRKWF+K H +K N + P +T+ + N T SE E+ RRKTSKYF
Sbjct: 3 DIRKWFMKAH--EKGNGSAPKSTSSKAGPVKNAAETAPIKSEQASEDLETADRRKTSKYF 60
Query: 56 ATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKAXXXXXXFVPPSVKKNSVGA 115
DK K +D E E +PAKRK + + V+ P K F P + + +
Sbjct: 61 GKDKTKVKDEKEVEAIPAKRKLKTESDDLVKPRPRKVTKVVDDDDDDFDVP-ISRKTRDT 119
Query: 116 TPSKKLKSGSGRAVAQKSVXXXXXXXXXVKKTESPLKXXXXXXXXXXXXXXXXXXXXXXX 175
TPSKKLKSGSGR +A K+V K+T PLK
Sbjct: 120 TPSKKLKSGSGRGIASKTVDNDDDDDGEDKET--PLKSAGRGRGGRAAPGASTGGRGRGG 177
Query: 176 XXXXFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRV 235
FMNFGERKDPPHKGEKEVPEG PDCL GLTFVISGTLDSLEREEAEDLIKRHGGR+
Sbjct: 178 GRGGFMNFGERKDPPHKGEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRI 237
Query: 236 TGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSV 295
TGSVSKKT YLLCDEDI G KS KAKELGT FLTEDGLFD+IR+SKP+K S K
Sbjct: 238 TGSVSKKTTYLLCDEDIGGRKSEKAKELGTKFLTEDGLFDIIRSSKPVKKSLPERSNKGT 297
Query: 296 EKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTP 355
EK+ A PK SPQ E + K+ +++ PAK K + I+ +SL WTEKYRPK P
Sbjct: 298 EKICAP-PKTSPQKEETRGKPLAKSSPKKVP----PAKGKNKIIE-TSLPWTEKYRPKVP 351
Query: 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAK 415
NEIVGNQ LV QLH WL+HW+++F TG+K GKK NDA ++KA +LSG+PG+GKTT+AK
Sbjct: 352 NEIVGNQSLVTQLHNWLSHWHDQFGGTGSKGKGKKLNDAGSKKAVLLSGTPGIGKTTSAK 411
Query: 416 LVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTV 475
LV QMLGFQA+EVNASDSRGKA++ I+KGIGGSNANS+KELV+NEA++AN DRSKHPKTV
Sbjct: 412 LVSQMLGFQAVEVNASDSRGKANSNIAKGIGGSNANSVKELVNNEAMAANFDRSKHPKTV 471
Query: 476 LIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRK 535
LIMDEVDGMSAGDRGG+ADL NDRYSQKLKSLVNYC L +RKP K
Sbjct: 472 LIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPLNYRKPTK 531
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRL 595
Q++AKRLM IA AEGLE+NEIALEELA+RVNGDIR+A+NQLQYMSLS+SVIKYDDIRQRL
Sbjct: 532 QQMAKRLMHIAKAEGLEINEIALEELAERVNGDIRLAVNQLQYMSLSMSVIKYDDIRQRL 591
Query: 596 LSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGR 655
LSSAKDEDISPFTAVDKLFG+NGGKLRMDERIDLSMSDPDLVPLLIQENY+NYRPS G+
Sbjct: 592 LSSAKDEDISPFTAVDKLFGYNGGKLRMDERIDLSMSDPDLVPLLIQENYLNYRPS--GK 649
Query: 656 DEVKRLSLIARAAESISDGDIFNVQIRRNXXXXXXXXXXXASCIIPAALMHGQRETLEQG 715
DE KR+ L+ARAAESI+DGDI NVQIRR AS I+PA+L+HG RE LEQG
Sbjct: 650 DEAKRMDLLARAAESIADGDIINVQIRRYRQWQLSQSCCVASSILPASLLHGSREVLEQG 709
Query: 716 ERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
ERNFNRFGGWLGKNST GKN RL+EDLH H LASR+S GR+TLR+DY LLL +LT PL
Sbjct: 710 ERNFNRFGGWLGKNSTAGKNRRLMEDLHVHVLASRESSAGRETLRVDYLPLLLSRLTSPL 769
Query: 776 RVLPKDELLRKLL 788
+ LPKDE + +++
Sbjct: 770 QTLPKDEAVSEVV 782
>DICTYBASE|DDB_G0285961 [details] [associations]
symbol:rfc1 "replication factor C subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 dictyBase:DDB_G0285961
Pfam:PF00533 GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0006355 GO:GO:0006351 GO:GO:0006298 EMBL:AAFI02000082
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 HSSP:P38630
GO:GO:0003689 eggNOG:COG0272 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 RefSeq:XP_638011.1 ProteinModelPortal:Q54MH9
STRING:Q54MH9 EnsemblProtists:DDB0232230 GeneID:8625362
KEGG:ddi:DDB_G0285961 KO:K10754 OMA:IIELSTW Uniprot:Q54MH9
Length = 1401
Score = 656 (236.0 bits), Expect = 4.7e-87, Sum P(3) = 4.7e-87
Identities = 171/500 (34%), Positives = 254/500 (50%)
Query: 280 SKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNI 339
S P+++ + + S S P S +TS+P PI M +V P K
Sbjct: 789 SLPVRSGSGGTTSSSPPLTFTSSPPTSTTTATTTTTSSP--PIS-MASVIVP-KSISTIP 844
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKA 399
+ + W EKYRPK +IVGN + ++ WL WN T + DAS + A
Sbjct: 845 KGHDILWVEKYRPKVIEDIVGNPGIFQEFGKWLDQWNS----TAPR-------DASKKNA 893
Query: 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK-ISKGIGGSNANSIKEL-V 457
+LSG PG+GKT+AA L+C+ GF+AIE+NASD+R K++ K + G+ N N K
Sbjct: 894 VLLSGPPGIGKTSAALLICKQKGFEAIELNASDARSKSEIKRLLSGVS-DNQNITKFFGT 952
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLXXXXXXXXXXXXXXXNDRYSQ 516
+N+ ++ +K KT +I+DE+DG S DRGGIA++ ND YS
Sbjct: 953 TNQDTGKDVQANKKIKTAIILDEIDGSSGNSDRGGIAEIIGLIKKSKMPFICLCNDYYSS 1012
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
K+ SL N+C DL+ RKP +++ RL+ IA EG++V+ +E++ + DIR +IN L
Sbjct: 1013 KVTSLRNHCMDLKLRKPTLNQVSSRLLAIAKHEGMKVSSYMIEKVYTSSHSDIRQSINTL 1072
Query: 577 QYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDL 636
Q MS S D++ Q L KD DISPFTA + + + + ++++D SD L
Sbjct: 1073 QMMSRSKRDYNNDNVTQSL--QEKDFDISPFTAAELILREDNSNI--NKKLDYFFSDFSL 1128
Query: 637 VPLLIQENYINYRPSSAG-RDEVKRLSLIARAAESISDGDIFNVQIRRNXXXXXXXXXXX 695
VPL+IQENY+ RP G + + LI+ AA+++SD D F I +
Sbjct: 1129 VPLIIQENYLKTRPYGGGSQSKYNDCELISMAADALSDSDQFGRAIGKEMAWNLLPTYGV 1188
Query: 696 ASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG 755
SCIIP+ + G F +LGK S K R + +L H ++ + +
Sbjct: 1189 TSCIIPSGYIRGSPPMPLS-------FPSYLGKYSNASKQQRFVRELQLHMRSTSNTFVN 1241
Query: 756 RDTLRLDYFSLLLKQLTEPL 775
RD RL Y +L L +PL
Sbjct: 1242 RDETRLYYVPMLKHHLIQPL 1261
Score = 231 (86.4 bits), Expect = 4.7e-87, Sum P(3) = 4.7e-87
Identities = 49/137 (35%), Positives = 73/137 (53%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
FM R PP+KG K P+G +CL G F++SG +D ER+E D+IKR GG+V S
Sbjct: 617 FMYMNGRPTPPNKGSKPRPQGKENCLRGKVFLVSGVMDCFERDEMHDIIKRWGGKVAKSA 676
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVA 299
K NYL+ +D+ K AK++G +TED +MI + P K ++ E+
Sbjct: 677 VKLLNYLVSGKDVGEKKLEGAKKVGAKIITEDEFLEMINKTLP-KPVSTTETTHISLPTP 735
Query: 300 ASLPKKSPQNIEAKSTS 316
P +P + + ST+
Sbjct: 736 TPTPTPTPASSSSSSTT 752
Score = 49 (22.3 bits), Expect = 4.7e-87, Sum P(3) = 4.7e-87
Identities = 31/138 (22%), Positives = 57/138 (41%)
Query: 4 DIRKWF--LKPHSKDKD--NATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDK 59
DIR +F +KP + ++ N SN E + S+ + + +K + DK
Sbjct: 38 DIRNFFAVIKPSTSGENVKNDLFSKAKEDSNKEFSLSDKENDDVKIISNKKDTTN--NDK 95
Query: 60 QKP-EDGGEKEELPAKR-KAEKDDGKSV----RSSPLKKFHKAXXXXXXFVPPSVKKNSV 113
+KP E+ K++ P+K D+ KS + P K P+ KK+++
Sbjct: 96 KKPSENKSPKKKEPSKSIDLTSDEDKSSSEEDKKKPSSSSSKKKPSSSSSSLPNKKKSTL 155
Query: 114 GATPSKKLKSGSGRAVAQ 131
K+ S S + ++
Sbjct: 156 KRLKKKRDDSSSSSSSSE 173
Score = 49 (22.3 bits), Expect = 2.8e-65, Sum P(2) = 2.8e-65
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 256 KSTKAKELGTPF-LTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIE 311
KS K KE LT D D + + K + + SKK ++SLP K ++
Sbjct: 102 KSPKKKEPSKSIDLTSDE--DKSSSEEDKKKPSSSSSKKKPSSSSSSLPNKKKSTLK 156
Score = 46 (21.3 bits), Expect = 5.9e-65, Sum P(2) = 5.9e-65
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 288 QAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMK 326
++ S++ +K ++S KK P + + + K+ ++R+K
Sbjct: 121 KSSSEEDKKKPSSSSSKKKPSSSSSSLPNKKKSTLKRLK 159
Score = 38 (18.4 bits), Expect = 8.3e-67, Sum P(3) = 8.3e-67
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 289 AESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMK 326
+++K++ + P KSP +T PI K
Sbjct: 305 SKTKETTSTTTDTKPIKSPSKSNKSTTPTTTTPITTEK 342
>FB|FBgn0004913 [details] [associations]
symbol:Gnf1 "Germ line transcription factor 1" species:7227
"Drosophila melanogaster" [GO:0003677 "DNA binding"
evidence=NAS;IDA] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0006260 "DNA replication" evidence=IEA;NAS] [GO:0005663 "DNA
replication factor C complex" evidence=IEA;NAS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005875 GO:GO:0022008
GO:GO:0006355 GO:GO:0003677 GO:GO:0006260 GO:GO:0006351
GO:GO:0046331 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 EMBL:L17340 EMBL:U97685 EMBL:AY122077
EMBL:BT003618 RefSeq:NP_001014605.1 RefSeq:NP_524229.1
UniGene:Dm.2491 ProteinModelPortal:P35600 SMR:P35600 DIP:DIP-18735N
IntAct:P35600 MINT:MINT-961959 STRING:P35600 PaxDb:P35600
EnsemblMetazoa:FBtr0078837 GeneID:40607 KEGG:dme:Dmel_CG1119
CTD:100035172 FlyBase:FBgn0004913 eggNOG:COG5275 InParanoid:P35600
OrthoDB:EOG4S1RP9 GenomeRNAi:40607 NextBio:819627 GermOnline:CG1119
Uniprot:P35600
Length = 986
Score = 579 (208.9 bits), Expect = 2.0e-82, Sum P(2) = 2.0e-82
Identities = 162/501 (32%), Positives = 248/501 (49%)
Query: 289 AESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTE 348
A+ K E + K ++ A + K P + + SP + + + W +
Sbjct: 366 AKHKVKEEHTSPKETKDKLNDVPAVTLKVKKEPSSQKEHPPSPRTADLKTLDVVGMAWVD 425
Query: 349 KYRPKTPNEIVGNQQL---VKQLHTWLAHWNEKFLDTGTKRNGK-----KQNDASAEKAA 400
K++P + EIVG V +L WL+ W G K+ + K +D S KAA
Sbjct: 426 KHKPTSIKEIVGQAGAASNVTKLMNWLSKWYVNH--DGNKKPQRPNPWAKNDDGSFYKAA 483
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
+LSG PG+GKTT A LV + LGF A+E NASD+R K ++ K + + L+SN+
Sbjct: 484 LLSGPPGIGKTTTATLVVKELGFDAVEFNASDTRSK---RLLK-------DEVSTLLSNK 533
Query: 461 ALSA---NMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLXXXXXXXXXXXXXXXNDRYSQ 516
+LS ++ K VLIMDEVDGM+ DRGG+ +L NDR
Sbjct: 534 SLSGYFTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHP 593
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
K++SLVNYC DLRF++PR ++I ++M I E ++++ +EE+ N DIR +IN +
Sbjct: 594 KIRSLVNYCYDLRFQRPRLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHI 653
Query: 577 QYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPD 635
+S + Q++ + KD + P+ V K+F + K + ++ DL D
Sbjct: 654 ALLSAKEDASQKSG--QQV--ATKDLKLGPWEVVRKVFTADEHKHMSFADKSDLFFHDYS 709
Query: 636 LVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNXXXXXXXXXXX 695
L PL +Q+NY+ P +D L+ +A A+++S GD+ +IR N
Sbjct: 710 LAPLFVQQNYLQVLPQGNKKDV---LAKVAATADALSLGDLVEKRIRANSAWSLLPTQAF 766
Query: 696 ASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKL 754
S ++P M G G+ NF GWLGKNS GK RL ++LH H + + S+L
Sbjct: 767 FSSVLPGEHMCGHFT----GQINFP---GWLGKNSKSGKRARLAQELHDHTRVCTSGSRL 819
Query: 755 GRDTLRLDYFSLLLKQLTEPL 775
++RLDY LL + PL
Sbjct: 820 ---SVRLDYAPFLLDNIVRPL 837
Score = 281 (104.0 bits), Expect = 2.0e-82, Sum P(2) = 2.0e-82
Identities = 61/147 (41%), Positives = 87/147 (59%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + R + G KE+P+G+PDCL GLTFV++G L+S+EREEAE +IK +GG+V V
Sbjct: 212 YQKYKNRSSCLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVV 271
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVA 299
KK YL+ E+ K A+EL P L+EDGLFD+IR + A E KKS +K
Sbjct: 272 GKKLKYLVVGEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGI-AKQVKEEKKSPKKEH 330
Query: 300 ASLPKKSPQNIEAKSTSAPKAPIERMK 326
+S +K + ++ S+ K E K
Sbjct: 331 SS-EEKGKKEVKTSRRSSDKKEKEATK 356
Score = 40 (19.1 bits), Expect = 5.1e-57, Sum P(2) = 5.1e-57
Identities = 15/74 (20%), Positives = 30/74 (40%)
Query: 50 KTSKYFATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKAXXXXXX-FVPPSV 108
K K + E+ G+KE ++R ++K + ++ + +K A P
Sbjct: 320 KEEKKSPKKEHSSEEKGKKEVKTSRRSSDKKEKEATKLKYGEKHDIAKHKVKEEHTSPKE 379
Query: 109 KKNSVGATPSKKLK 122
K+ + P+ LK
Sbjct: 380 TKDKLNDVPAVTLK 393
Score = 39 (18.8 bits), Expect = 6.4e-57, Sum P(2) = 6.4e-57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 59 KQ-KPEDGGEKEELPAKRKAEKDDGKSVRSSPLKK 92
KQ K E K+E ++ K +K+ S RSS K+
Sbjct: 317 KQVKEEKKSPKKEHSSEEKGKKEVKTSRRSSDKKE 351
Score = 38 (18.4 bits), Expect = 8.2e-57, Sum P(2) = 8.2e-57
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 57 TDKQKPEDGGEKEELPAKRKAE 78
T K K E +KE P+ R A+
Sbjct: 391 TLKVKKEPSSQKEHPPSPRTAD 412
>SGD|S000005743 [details] [associations]
symbol:RFC1 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000278 "mitotic cell cycle"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0051301
"cell division" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0006281 "DNA
repair" evidence=IMP] [GO:0006272 "leading strand elongation"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 SGD:S000005743 Pfam:PF00533 GO:GO:0005524
GO:GO:0005634 EMBL:BK006948 GO:GO:0051301 GO:GO:0006298 EMBL:X92441
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0000278 GO:GO:0003689
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 PDB:1SXJ PDBsum:1SXJ
KO:K10754 eggNOG:COG5275 HOGENOM:HOG000164552 OMA:KLRMDER
OrthoDB:EOG4WDHM8 EMBL:U03102 EMBL:U26027 EMBL:Z75125 PIR:S44763
RefSeq:NP_014860.1 ProteinModelPortal:P38630 SMR:P38630
DIP:DIP-2527N IntAct:P38630 MINT:MINT-619267 STRING:P38630
PaxDb:P38630 PeptideAtlas:P38630 EnsemblFungi:YOR217W GeneID:854392
KEGG:sce:YOR217W CYGD:YOR217w EvolutionaryTrace:P38630
NextBio:976553 Genevestigator:P38630 GermOnline:YOR217W
Uniprot:P38630
Length = 861
Score = 710 (255.0 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 200/594 (33%), Positives = 296/594 (49%)
Query: 198 PEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKS 257
PEG P+CL GLT V +G L +LER +E L KR+G RVT S+S KT+ ++ ++ K
Sbjct: 151 PEGKPNCLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVLGDEAGPKKL 210
Query: 258 TKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSA 317
K K+L + E+G F + A P A+ ++ EK L ++ NI K
Sbjct: 211 EKIKQLKIKAIDEEG-FKQLIAGMP----AEGGDGEAAEKARRKLEEQ--HNIATKEAEL 263
Query: 318 -PKAPIERMKTVASPAKRKGQ----NI-QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTW 371
K ER K +A+ G N+ ++ WT KY P ++ GN+ V +L W
Sbjct: 264 LVKKEEERSKKLAATRVSGGHLERDNVVREEDKLWTVKYAPTNLQQVCGNKGSVMKLKNW 323
Query: 372 LAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431
LA+W E K GK + + +AA+L G PG+GKTTAA LV Q LG+ +E NAS
Sbjct: 324 LANW-ENSKKNSFKHAGK--DGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 380
Query: 432 DSRGKADAKISKGIGGSNAN-SIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG 490
D R K ++ G+ + N S+ + + N++ KH V+IMDEVDGMS GDRG
Sbjct: 381 DVRSKT--LLNAGVKNALDNMSVVGYFKHNEEAQNLN-GKH--FVIIMDEVDGMSGGDRG 435
Query: 491 GIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEG 550
G+ L N+R K++ C D++FR+P I RLM IA E
Sbjct: 436 GVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREK 495
Query: 551 LEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDIS--PFT 608
+++ ++ L GDIR IN L +S + I +++I + +S A +++I+ PF
Sbjct: 496 FKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINE--ISKAWEKNIALKPFD 553
Query: 609 AVDKL-----FGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLS 662
K+ + G + ++++I L D D PL+IQENY++ RPS + L
Sbjct: 554 IAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPGQ-SHLE 612
Query: 663 LIARAAESISDGDIFNVQIRRNXXXXXXXXXXXA-SCIIPAALMHGQRETLEQGERNFNR 721
+A AA IS GDI +IR + S + PA+ + G G NF
Sbjct: 613 AVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAGHMA----GRINFT- 667
Query: 722 FGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEP 774
WLG+NS K RLL+++H+H L + K+G LRLDY K+L +P
Sbjct: 668 --AWLGQNSKSAKYYRLLQEIHYHTRLGTSTDKIG---LRLDYLPTFRKRLLDP 716
Score = 52 (23.4 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 58 DKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKA 96
D + +G +K LPAKRKA K S K K+
Sbjct: 59 DVSETPEGEKKLPLPAKRKASSPTVKPASSKKTKPSSKS 97
>UNIPROTKB|E1C339 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:AADN02015876 EMBL:AADN02015877
EMBL:AADN02015878 EMBL:AADN02015879 EMBL:AADN02015880
IPI:IPI00683437 Ensembl:ENSGALT00000029582 ArrayExpress:E1C339
Uniprot:E1C339
Length = 1153
Score = 702 (252.2 bits), Expect = 1.9e-71, Sum P(2) = 1.9e-71
Identities = 189/553 (34%), Positives = 286/553 (51%)
Query: 241 KKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAA 300
KK+ Y L E AK T+++ TP TE G R P+K +A+ KKS
Sbjct: 486 KKSKYELAAE--TEAKKTESRHKKTPQKTESGK----RNFSPLKR--EADRKKSNHTPEK 537
Query: 301 SLPKKSPQNIEAKSTSAPKAPIERMKTVASPA--KRKGQNIQQSS------LTWTEKYRP 352
P KS ++ ++T+ K +TV K KG + + S L W +KY+P
Sbjct: 538 GGPFKS---VKKEATAVQKLKDFEHQTVEKKEAPKPKGNFVSERSEDRTETLLWVDKYKP 594
Query: 353 KTPNEIVGNQ---QLVKQLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPG 407
+ I+G Q +L WL W++ + G + K ++D ++ KAA+LSG PG
Sbjct: 595 VSLKAIIGQQGEQSCANKLLRWLRSWHKNTSEDGQAKTNKSGGKDDGASFKAALLSGPPG 654
Query: 408 MGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANM 466
+GKTT A LVC+ LG+ +E+NASD+R K K + + S N SIK+ S + S +
Sbjct: 655 VGKTTTASLVCKELGYSYVELNASDTRSKNSLK--EVVAESLNNTSIKDFCSGTSSSVS- 711
Query: 467 DRSKHPKTVLIMDEVDGMSAG-DRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYC 525
KH VLIMDEVDGM+ DRGGI +L NDR K++SLV+YC
Sbjct: 712 --GKH---VLIMDEVDGMAGNEDRGGIQELIGLIRHTKVPIICMCNDRNHPKIRSLVHYC 766
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV 585
DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++ L
Sbjct: 767 FDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMNEIILAANQDIRQVLHNLNMWCAKDKS 826
Query: 586 IKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQE 643
+ YD+ + + KD + PF V K+F G ++ + ++ DL D L PL +QE
Sbjct: 827 LTYDEAKTDASRAKKDIKLGPFDVVRKVFAAGEEASRMSLIDKSDLFFHDYSLAPLFVQE 886
Query: 644 NYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNXXXXXXXXXXXASCIIPAA 703
NY++ +P++AG D K L L++RAA+SI DGD+ + QIR S ++P
Sbjct: 887 NYVHVKPAAAGGDLKKHLMLLSRAADSICDGDLVDKQIRTKQNWNLLPTQAIYSSVLPGE 946
Query: 704 LMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDY 763
LM G + Q F F WLGK S+ GK+ R++++L H ++++ + T+ ++Y
Sbjct: 947 LMRGY---MAQ----FPVFPNWLGKFSSTGKHERIIQELAMHMSLRQRTQACKRTVNMEY 999
Query: 764 FSLLLKQLTEPLR 776
S L L +PL+
Sbjct: 1000 LSHLRDALVQPLK 1012
Score = 324 (119.1 bits), Expect = 8.9e-26, Sum P(2) = 8.9e-26
Identities = 69/156 (44%), Positives = 100/156 (64%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ +F R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+V
Sbjct: 383 YRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNV 442
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVA 299
SKKTNYL+ D +K KA LGT + EDGLFD++R K+ + ++ +K
Sbjct: 443 SKKTNYLVMGRDCGQSKCEKASTLGTKIIDEDGLFDLVRTMPGKKSKYELAAETEAKKTE 502
Query: 300 ASLPKKSPQNIEA-KSTSAP-KAPIERMKTVASPAK 333
S KK+PQ E+ K +P K +R K+ +P K
Sbjct: 503 -SRHKKTPQKTESGKRNFSPLKREADRKKSNHTPEK 537
Score = 54 (24.1 bits), Expect = 1.9e-71, Sum P(2) = 1.9e-71
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 104 VPPSVKKNSVGATPSKKLKSGSGRAVAQK 132
VPP ++ S S+K+K+G G + +K
Sbjct: 10 VPPGKRQESEAVKKSEKIKNGEGESSGKK 38
Score = 54 (24.1 bits), Expect = 1.9e-71, Sum P(2) = 1.9e-71
Identities = 25/99 (25%), Positives = 44/99 (44%)
Query: 4 DIRKWF-LKPHSKDKDNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQ-- 60
DIRK+F + P K +++ + + + N E +S G E+ + S+ KQ
Sbjct: 2 DIRKFFGVVPPGKRQESEAVKKSEKIKNGEGESSGKK-RGKETKVKSSPSEDVPKQKQAY 60
Query: 61 KPE----DGGEKEELPAKRKAEKDDGKSVRSSPLKKFHK 95
K + D +EE+ + +K +K K + L K K
Sbjct: 61 KKKRIIYDSDSEEEVQSVKKTKKPSEKKAATPKLGKVLK 99
Score = 48 (22.0 bits), Expect = 8.1e-71, Sum P(2) = 8.1e-71
Identities = 20/85 (23%), Positives = 33/85 (38%)
Query: 10 LKPHSKDKDNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQKPEDGGEKE 69
L P S D A L L+ T+ E ++++ K+K G E++
Sbjct: 292 LHPQSSDGKTARALTEKTLP-LKPTSKLVALKQKEETTKKESGTQNLLSKEKNATGKEEK 350
Query: 70 ELPAKRKA--EKDDGKSVRSSPLKK 92
P K K +K + KS+ +K
Sbjct: 351 RTPKKEKISPKKAEPKSISPEDSEK 375
Score = 41 (19.5 bits), Expect = 4.4e-70, Sum P(2) = 4.4e-70
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 69 EELPAKRKAEKDDGK----SVRSSP 89
+E P K+KA +D + S +SSP
Sbjct: 233 DETPQKKKARRDSEEQTVLSTKSSP 257
>UNIPROTKB|F1NEP9 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 EMBL:AADN02015876 EMBL:AADN02015877 EMBL:AADN02015878
EMBL:AADN02015879 EMBL:AADN02015880 IPI:IPI00574416
Ensembl:ENSGALT00000023118 ArrayExpress:F1NEP9 Uniprot:F1NEP9
Length = 1147
Score = 697 (250.4 bits), Expect = 6.4e-71, Sum P(2) = 6.4e-71
Identities = 190/553 (34%), Positives = 286/553 (51%)
Query: 241 KKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAA 300
KK+ Y L E AK T+++ TP TE G R P+K +A+ KKS
Sbjct: 482 KKSKYELAAE--TEAKKTESRHKKTPQKTESGK----RNFSPLKR--EADRKKSNHTPEK 533
Query: 301 SLPKKSPQNIEAKSTSAPKAPIERMKTVASPA--KRKGQNIQQSS------LTWTEKYRP 352
P KS ++ ++T+ K +TV K KG + + S L W +KY+P
Sbjct: 534 GGPFKS---VKKEATAVQKLKDFEHQTVEKKEAPKPKGNFVSERSEDRTETLLWVDKYKP 590
Query: 353 KTPNEIVGNQ---QLVKQLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPG 407
+ I+G Q +L WL W++ + G + K ++D ++ KAA+LSG PG
Sbjct: 591 VSLKAIIGQQGEQSCANKLLRWLRSWHKNTSEDGQAKTNKSGGKDDGASFKAALLSGPPG 650
Query: 408 MGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANM 466
+GKTT A LVC+ LG+ +E+NASD+R K K + + S N SIK+ S + S +
Sbjct: 651 VGKTTTASLVCKELGYSYVELNASDTRSKNSLK--EVVAESLNNTSIKDFCSGTSSSVS- 707
Query: 467 DRSKHPKTVLIMDEVDGMSAG-DRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYC 525
KH VLIMDEVDGM+ DRGGI +L NDR K++SLV+YC
Sbjct: 708 --GKH---VLIMDEVDGMAGNEDRGGIQELIGLIRHTKVPIICMCNDRNHPKIRSLVHYC 762
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV 585
DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++ L
Sbjct: 763 FDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMNEIILAANQDIRQVLHNLNMWCAKDKS 822
Query: 586 IKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQE 643
+ YD+ + + KD + PF V K+F G ++ + ++ DL D L PL +QE
Sbjct: 823 LTYDEAKTDASRAKKDIKLGPFDVVRKVFAAGEEASRMSLIDKSDLFFHDYSLAPLFVQE 882
Query: 644 NYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNXXXXXXXXXXXASCIIPAA 703
NY++ +P++AG D K L L++RAA+SI DGD+ + QIR S ++P
Sbjct: 883 NYVHVKPAAAGGDLKKHLMLLSRAADSICDGDLVDKQIRTKQNWNLLPTQAIYSSVLPGE 942
Query: 704 LMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDY 763
LM G + Q F F WLGK S+ GK+ R++++L H S +++ + T+ ++Y
Sbjct: 943 LMRGY---MAQ----FPVFPNWLGKFSSTGKHERIIQELAMH--MSLRTQACKRTVNMEY 993
Query: 764 FSLLLKQLTEPLR 776
S L L +PL+
Sbjct: 994 LSHLRDALVQPLK 1006
Score = 324 (119.1 bits), Expect = 8.8e-26, Sum P(2) = 8.8e-26
Identities = 69/156 (44%), Positives = 100/156 (64%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ +F R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+V
Sbjct: 379 YRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNV 438
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVA 299
SKKTNYL+ D +K KA LGT + EDGLFD++R K+ + ++ +K
Sbjct: 439 SKKTNYLVMGRDCGQSKCEKASTLGTKIIDEDGLFDLVRTMPGKKSKYELAAETEAKKTE 498
Query: 300 ASLPKKSPQNIEA-KSTSAP-KAPIERMKTVASPAK 333
S KK+PQ E+ K +P K +R K+ +P K
Sbjct: 499 -SRHKKTPQKTESGKRNFSPLKREADRKKSNHTPEK 533
Score = 54 (24.1 bits), Expect = 6.4e-71, Sum P(2) = 6.4e-71
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 104 VPPSVKKNSVGATPSKKLKSGSGRAVAQK 132
VPP ++ S S+K+K+G G + +K
Sbjct: 10 VPPGKRQESEAVKKSEKIKNGEGESSGKK 38
Score = 54 (24.1 bits), Expect = 6.4e-71, Sum P(2) = 6.4e-71
Identities = 25/99 (25%), Positives = 44/99 (44%)
Query: 4 DIRKWF-LKPHSKDKDNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQ-- 60
DIRK+F + P K +++ + + + N E +S G E+ + S+ KQ
Sbjct: 2 DIRKFFGVVPPGKRQESEAVKKSEKIKNGEGESSGKK-RGKETKVKSSPSEDVPKQKQAY 60
Query: 61 KPE----DGGEKEELPAKRKAEKDDGKSVRSSPLKKFHK 95
K + D +EE+ + +K +K K + L K K
Sbjct: 61 KKKRIIYDSDSEEEVQSVKKTKKPSEKKAATPKLGKVLK 99
Score = 48 (22.0 bits), Expect = 2.7e-70, Sum P(2) = 2.7e-70
Identities = 18/83 (21%), Positives = 30/83 (36%)
Query: 10 LKPHSKDKDNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQKPEDGGEKE 69
L P S D A L L+ T+ E ++++ K+K G E++
Sbjct: 290 LHPQSSDGKTARALTEKTLP-LKPTSKLVALKQKEETTKKESGTQNLLSKEKNATGKEEK 348
Query: 70 ELPAKRKAEKDDGKSVRSSPLKK 92
P K K +S+ +K
Sbjct: 349 RTPKKEKISPKKAESISPEDSEK 371
Score = 41 (19.5 bits), Expect = 1.5e-69, Sum P(2) = 1.5e-69
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 69 EELPAKRKAEKDDGK----SVRSSP 89
+E P K+KA +D + S +SSP
Sbjct: 231 DETPQKKKARRDSEEQTVLSTKSSP 255
>MGI|MGI:97891 [details] [associations]
symbol:Rfc1 "replication factor C (activator 1) 1"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 MGI:MGI:97891 Pfam:PF00533 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0006260 GO:GO:0006351
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 eggNOG:COG5275 CTD:5981
HOVERGEN:HBG004167 OrthoDB:EOG4D26P3 ChiTaRS:RFC1 EMBL:U01222
EMBL:X72711 EMBL:U36441 EMBL:U07157 EMBL:U15037 IPI:IPI00378168
IPI:IPI00896013 PIR:A49393 RefSeq:NP_035388.2 UniGene:Mm.148877
ProteinModelPortal:P35601 SMR:P35601 STRING:P35601
PhosphoSite:P35601 PaxDb:P35601 PRIDE:P35601 GeneID:19687
KEGG:mmu:19687 UCSC:uc008xni.2 UCSC:uc008xnj.2 InParanoid:P35601
NextBio:297020 CleanEx:MM_RFC1 Genevestigator:P35601
GermOnline:ENSMUSG00000029191 Uniprot:P35601
Length = 1131
Score = 649 (233.5 bits), Expect = 9.9e-67, Sum P(2) = 9.9e-67
Identities = 180/547 (32%), Positives = 277/547 (50%)
Query: 241 KKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAA 300
K++ Y + E A K K+K TP + G R P K ++ESKK K+
Sbjct: 482 KRSKYEMAAE--AEMKKEKSKLERTPQKNDQGK----RKISPAKK--ESESKKC--KL-- 529
Query: 301 SLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVG 360
+L K SP K S ++ +T + + K + L W +KY+P + I+G
Sbjct: 530 TLLKNSPMKAVKKEASTCPRGLDVKETHGNRSSNK-----EECLLWVDKYKPASLKNIIG 584
Query: 361 ---NQQLVKQLHTWLAHWNEKFLDTG--TKRNGK--KQNDASAEKAAILSGSPGMGKTTA 413
+Q +L WL +W++ + + GK ++D S+ KAA+LSG PG+GKTT
Sbjct: 585 QQGDQSCANKLLRWLRNWHKSSPEEKKHAAKFGKLASKDDGSSFKAALLSGPPGVGKTTT 644
Query: 414 AKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKH 471
A LVCQ LG+ +E+NASD+R K K +++ + N SIK ++ A A ++H
Sbjct: 645 ASLVCQELGYSYVELNASDTRSKNSLKAVVAESL---NNTSIKGFYTSGA--APSVSARH 699
Query: 472 PKTVLIMDEVDGMSAG-DRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYCSDLRF 530
LIMDEVDGM+ DRGGI +L NDR K++SLV+YC DLRF
Sbjct: 700 ---ALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRF 756
Query: 531 RKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDD 590
++PR ++I ++ IA EGL++ A+ E+ N D+R ++ L + YD
Sbjct: 757 QRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQ 816
Query: 591 IRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINY 648
+ + KD + PF K+F G + + ++ DL D + PL +QENY++
Sbjct: 817 AKADSQRAKKDIRLGPFDVTRKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHV 876
Query: 649 RPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNXXXXXXXXXXXASCIIPAALMHGQ 708
+P +AG D K L L++RAA+SI DGD+ + QIR + ++P LM G
Sbjct: 877 KPVAAGGDMKKHLMLLSRAADSICDGDLVDNQIRSKQNWSLLPTQAIYASVLPGELMRGY 936
Query: 709 RETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLL 768
+ Q F F WLGK+S+ GK+ R+++DL H S ++ + T+ +DY S +
Sbjct: 937 ---MTQ----FPSFPSWLGKHSSTGKHDRIVQDLSLH--MSLRTYSSKRTVNMDYLSHIR 987
Query: 769 KQLTEPL 775
L PL
Sbjct: 988 DALVRPL 994
Score = 307 (113.1 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 103/316 (32%), Positives = 159/316 (50%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+V
Sbjct: 379 YRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNV 438
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA--SKPMK--ALAQAESKKSV 295
SKKTNYL+ D +KS KA LGT L EDGL D+IR K K A+AE KK
Sbjct: 439 SKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGKRSKYEMAAEAEMKKEK 498
Query: 296 EKVAASLPKKSPQNIEAKSTSAPKAPIERMK-TVASPAKRKGQNIQQSSLTWTEKYRPKT 354
K+ + P+K+ Q S + ++ ++ K T+ + K + S+ R
Sbjct: 499 SKLERT-PQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCP-----RGLD 552
Query: 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAA 414
E GN+ K+ L W +K+ K +Q D S +L K++
Sbjct: 553 VKETHGNRSSNKE-ECLL--WVDKYKPASLKNIIGQQGDQSCANK-LLRWLRNWHKSSPE 608
Query: 415 KLVCQMLGFQAIEVNASDSRGKADAKIS--KGIGGSNANSI--KEL-VSNEALSANMDRS 469
+ F + S KA A +S G+G + S+ +EL S L+A+ RS
Sbjct: 609 EKK-HAAKFGKLASKDDGSSFKA-ALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRS 666
Query: 470 KHPKTVLIMDEVDGMS 485
K+ ++ + ++ S
Sbjct: 667 KNSLKAVVAESLNNTS 682
Score = 64 (27.6 bits), Expect = 9.9e-67, Sum P(2) = 9.9e-67
Identities = 24/92 (26%), Positives = 40/92 (43%)
Query: 4 DIRKWFLKPHSKDKDNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQKPE 63
DIRK+F S K P N + N +T SE G + + K + D KP+
Sbjct: 2 DIRKFFGVISSGKK-----PVNETVKNEKTKASEGTVKGKKGVKEAKVNNSGKEDASKPK 56
Query: 64 DGGEKEELPAKRKAEKDDGKSVRSSPLKKFHK 95
+K+ + +E ++ V+++ KK K
Sbjct: 57 QHSKKKRIIYDSDSESEETVQVKNAK-KKSEK 87
Score = 53 (23.7 bits), Expect = 1.4e-65, Sum P(2) = 1.4e-65
Identities = 20/72 (27%), Positives = 27/72 (37%)
Query: 23 PANTALSNLETTNSEPGCGGH--ESMGRRKTSKYFATDKQKPEDG-GEKEELPAKRKAEK 79
PA +P H E+ K S A K K E E E L A+RK
Sbjct: 282 PAKHGKGRASEDAKQPCKSAHRKEACSSPKASAKLALMKAKEESSYNETELLAARRKESA 341
Query: 80 DDGKSVRSSPLK 91
+ K +++P K
Sbjct: 342 TEPKGEKTTPKK 353
Score = 43 (20.2 bits), Expect = 1.6e-64, Sum P(2) = 1.6e-64
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 50 KTSKY-FATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKK 92
K SKY A + + ++ + E P K D GK + SP KK
Sbjct: 482 KRSKYEMAAEAEMKKEKSKLERTPQKN----DQGKR-KISPAKK 520
>UNIPROTKB|F1S4I7 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0005634
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:FP089679 Ensembl:ENSSSCT00000009614
Uniprot:F1S4I7
Length = 1146
Score = 663 (238.4 bits), Expect = 1.6e-66, Sum P(2) = 1.6e-66
Identities = 192/558 (34%), Positives = 283/558 (50%)
Query: 241 KKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAA 300
KK+ Y + E A K K+K TP + G R P K ++ESKK +
Sbjct: 483 KKSKYEIAVE--AEMKKEKSKLERTPQKKDQGK----RKVSPTKK--ESESKKCKQT--- 531
Query: 301 SLPKK-SPQNIEAKSTSAPKAPIERMKTVA--SPAKRKGQNIQQSS-------LTWTEKY 350
PK+ S N K TS + ++ + VA + + +N+ S L W +KY
Sbjct: 532 --PKRESSINSIKKETSVFRKGLDFKEQVAEETDGDSRARNLADDSSENKVENLLWVDKY 589
Query: 351 RPKTPNEIVG---NQQLVKQLHTWLAHWNEKFLDTGTKRNGK--K---QNDASAEKAAIL 402
+P + I+G +Q +L WL +W+ K KR K K ++D S+ KAA+L
Sbjct: 590 KPASLKTIIGQQGDQSCANKLLRWLQNWH-KSPSEDKKRAAKFGKFAGKDDGSSFKAALL 648
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKELVSNE 460
SG PG+GKTT A LVCQ LG+ +E+NASD+R K K I++ + N SIK S+
Sbjct: 649 SGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKEIIAESL---NNTSIKGFYSSG 705
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLXXXXXXXXXXXXXXXNDRYSQKLK 519
A A+ +KH LIMDEVDGM+ DRGGI +L NDR K++
Sbjct: 706 A--AHSVSTKH---ALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIR 760
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++ L
Sbjct: 761 SLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMW 820
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLV 637
+ YD + + KD + PF K+F G + + ++ DL D +
Sbjct: 821 CARSKALTYDQAKADSHRAKKDIKLGPFDVARKVFVTGEETAHMSLMDKSDLFFHDYSIA 880
Query: 638 PLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNXXXXXXXXXXXAS 697
PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR +
Sbjct: 881 PLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDRQIRNKQNWSLLPTQAIYA 940
Query: 698 CIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRD 757
++P LM G + Q F F WLGK+S+ GK+ R+++DL H S ++ +
Sbjct: 941 SVLPGELMRGY---MTQ----FPSFPSWLGKHSSAGKHDRIVQDLALHMSLSLRTYSSKR 993
Query: 758 TLRLDYFSLLLKQLTEPL 775
T+ +DY S + L +PL
Sbjct: 994 TVNMDYLSHIRDALVQPL 1011
Score = 305 (112.4 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
Identities = 106/331 (32%), Positives = 166/331 (50%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+V
Sbjct: 380 YRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNV 439
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA---LA-QAESKKSV 295
SKKTNYL+ D +KS KA LGT + EDGL ++IR K+ +A +AE KK
Sbjct: 440 SKKTNYLVMGRDSGQSKSGKAAALGTKIIDEDGLLNLIRTMPGKKSKYEIAVEAEMKKEK 499
Query: 296 EKVAASLPKK-------SPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTE 348
K+ + KK SP E++S + P +R ++ S +K ++ + L + E
Sbjct: 500 SKLERTPQKKDQGKRKVSPTKKESESKKCKQTP-KRESSINSI--KKETSVFRKGLDFKE 556
Query: 349 KYRPKTPNEI----VGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI--L 402
+ +T + + + ++ L W +K+ K +Q D S + L
Sbjct: 557 QVAEETDGDSRARNLADDSSENKVENLL--WVDKYKPASLKTIIGQQGDQSCANKLLRWL 614
Query: 403 SG---SPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKIS--KGIGGSNANSI--KE 455
SP K AAK F S KA A +S G+G + S+ +E
Sbjct: 615 QNWHKSPSEDKKRAAK-------FGKFAGKDDGSSFKA-ALLSGPPGVGKTTTASLVCQE 666
Query: 456 L-VSNEALSANMDRSKHPKTVLIMDEVDGMS 485
L S L+A+ RSK+ +I + ++ S
Sbjct: 667 LGYSYVELNASDTRSKNSLKEIIAESLNNTS 697
Score = 48 (22.0 bits), Expect = 1.6e-66, Sum P(2) = 1.6e-66
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 50 KTSKY-FATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKK 92
K SKY A + + ++ + E P K KD GK + SP KK
Sbjct: 483 KKSKYEIAVEAEMKKEKSKLERTPQK----KDQGKR-KVSPTKK 521
Score = 46 (21.3 bits), Expect = 2.5e-66, Sum P(2) = 2.5e-66
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 50 KTSKYFATDKQKPEDGGEKEE-LPAKRKAE----KDDG--KSVRSSPLKK 92
K S A K+K E K E + +KRK + K+ K ++ SP KK
Sbjct: 313 KASSKLALLKRKEESSNNKTEPMGSKRKEDAIELKETRTPKKIKGSPAKK 362
Score = 40 (19.1 bits), Expect = 1.1e-65, Sum P(2) = 1.1e-65
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 90 LKKFHKAXXXXXXFVPPSVKKNSVGATPSKKLKSGSG 126
++KF V +VKKN + + LK+ G
Sbjct: 3 IRKFFGVVPSGKKLVSETVKKNEKSKSAEETLKTKKG 39
Score = 37 (18.1 bits), Expect = 2.3e-65, Sum P(2) = 2.3e-65
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 56 ATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPL 90
A K K G L A + ++ ++ PL
Sbjct: 121 AASKSKENGGSTNNYLGASNMKKNEENTKAKNKPL 155
>ZFIN|ZDB-GENE-070410-99 [details] [associations]
symbol:rfc1 "replication factor C (activator 1) 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
ZFIN:ZDB-GENE-070410-99 GO:GO:0005524 GO:GO:0006260 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GeneTree:ENSGT00670000098003
GO:GO:0003689 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
EMBL:CR759875 EMBL:BX000461 IPI:IPI00851894 RefSeq:NP_001082960.2
UniGene:Dr.79216 Ensembl:ENSDART00000143948 GeneID:100037336
KEGG:dre:100037336 NextBio:20788508 ArrayExpress:F1Q5P6 Bgee:F1Q5P6
Uniprot:F1Q5P6
Length = 1147
Score = 655 (235.6 bits), Expect = 2.2e-66, Sum P(2) = 2.2e-66
Identities = 194/576 (33%), Positives = 283/576 (49%)
Query: 219 LEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR 278
+ +E DLI+ G KK+ Y + E A KS+K + TP D +
Sbjct: 466 INEDELLDLIRTKPG-------KKSKYEIAAE--AENKSSKTR---TP----DSRGKV-- 507
Query: 279 ASKPMKALAQAES-KKSVEKVAASLP-KKSPQNIEAKSTSAPKAPI--ERMKTVASPAKR 334
AS KA Q S K S P S S S K + ++ KT ASP
Sbjct: 508 ASSAKKATPQGPSPNKRSSSGGKSKPGSASKSGARGASCSEVKKSLSFDQTKT-ASPVSH 566
Query: 335 KGQNIQQSSLTWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHWNEKFLDTG---TKRNG 388
SSL W +KYRP++ ++G +Q +L WL W++ + G
Sbjct: 567 SAPENDGSSLLWVDKYRPRSLKNLIGQQGDQSCANKLLRWLQSWHKHHSGNAKAPAPKFG 626
Query: 389 K--KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIG 446
K ++D S KAA+LSG PG+GKTT A LVC+ LG+ +E+NAS +R K K + I
Sbjct: 627 KFGSKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASCTRSKNSLK--EVIA 684
Query: 447 GS-NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLXXXXXXXXX 504
S N SIK + + + + SKH VLIMDEVDGM+ DRGGI ++
Sbjct: 685 ESLNNTSIKNFYTGASQTVS---SKH---VLIMDEVDGMAGNEDRGGIQEMIGLIKQSKI 738
Query: 505 XXXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR 564
NDR QK++SL NYC DLRF++PR ++I +M IA EGL++ AL E+
Sbjct: 739 PIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPALNEVILA 798
Query: 565 VNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLR 622
N DIR ++ L S V+ YD + ++ KD + PF K+F G +
Sbjct: 799 SNQDIRQVLHNLSMWSAKDKVMTYDQAKADANNAKKDMKLGPFDVCRKVFALGEETAHMS 858
Query: 623 MDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIR 682
+ ++ DL D L PL +QENY++ RP++AG + L L+++ A+SI DGD+ + QIR
Sbjct: 859 LIDKSDLFFHDYSLAPLFVQENYLHVRPAAAGGNLKSHLVLLSKTADSICDGDLVDRQIR 918
Query: 683 RNXXXXXXXXXXXASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDL 742
+ ++P LM G + Q F F WLGK S+ GK+ R++++L
Sbjct: 919 SKQTWSLLPTQAIYASVLPGELMRGY---MSQ----FPNFPSWLGKFSSSGKHSRIIQEL 971
Query: 743 HFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVL 778
H S K+ ++ + LDY L + +PL+ L
Sbjct: 972 ASH--MSLKTLSSKEAVNLDYLPYLRSAVLKPLQSL 1005
Score = 264 (98.0 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 62/155 (40%), Positives = 96/155 (61%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ ++ R+ P G K++P+G +CL G FV++G L+S+ER+EA+ LI+R+GG+VTG+V
Sbjct: 378 YRSYLNREGPRALGSKDIPQGEENCLEGCVFVLTGVLESMERDEAKSLIERYGGKVTGNV 437
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA-----LAQAESKKS 294
S+KT YL+ D +K+ KA+ GT + ED L D+IR +KP K A+AE+K S
Sbjct: 438 SRKTTYLVLGRDSGVSKTEKAESFGTKIINEDELLDLIR-TKPGKKSKYEIAAEAENKSS 496
Query: 295 VE-------KVAASLPKKSPQ--NIEAKSTSAPKA 320
KVA+S K +PQ + +S+S K+
Sbjct: 497 KTRTPDSRGKVASSAKKATPQGPSPNKRSSSGGKS 531
Score = 55 (24.4 bits), Expect = 2.2e-66, Sum P(2) = 2.2e-66
Identities = 23/84 (27%), Positives = 34/84 (40%)
Query: 50 KTSKYFATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKAXXXXXXFVPPSVK 109
KTS A K++ E E++E K K EK ++ SP KK + P
Sbjct: 280 KTSSKLAQMKRRQE---ERDEQGKKDKGEKQ----IKISP-KKEPISPTSSERAATPKTA 331
Query: 110 KNSVGATPSKKLKSGSGRAVAQKS 133
S G S+ L + +V K+
Sbjct: 332 SASAGMAKSRNLSTPKSESVPSKT 355
Score = 45 (20.9 bits), Expect = 2.5e-65, Sum P(2) = 2.5e-65
Identities = 22/67 (32%), Positives = 29/67 (43%)
Query: 59 KQKPEDGGEKEELPAKRKAEKDDGKS--VRSSPLKKFHKAXXXXXXFVPPSVKKNS--VG 114
K KP++ G AK K E D GK+ V+ S K K+ V S S V
Sbjct: 105 KPKPKENGT-----AKGKKESDSGKAKQVKVSSSKSPVKSPSTVKGGVKSSQPTVSPKVA 159
Query: 115 ATPSKKL 121
TP K++
Sbjct: 160 PTPPKQM 166
>UNIPROTKB|P35251 [details] [associations]
symbol:RFC1 "Replication factor C subunit 1" species:9606
"Homo sapiens" [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006261
"DNA-dependent DNA replication" evidence=TAS] [GO:0007004 "telomere
maintenance via telomerase" evidence=TAS] [GO:0008047 "enzyme
activator activity" evidence=TAS] [GO:0000084 "S phase of mitotic
cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0043085 "positive regulation of
catalytic activity" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0006355
GO:GO:0006351 GO:GO:0008047 GO:GO:0000084 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:CH471069 GO:GO:0007004
GO:GO:0000722 Pathway_Interaction_DB:faspathway Reactome:REACT_383
GO:GO:0006283 GO:GO:0003689 GO:GO:0006271 GO:GO:0032201
GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754
eggNOG:COG5275 EMBL:L23320 EMBL:Z22642 EMBL:AF040250 EMBL:AY600371
EMBL:AK291612 EMBL:BC035297 EMBL:BC051751 EMBL:BC051786
IPI:IPI00375358 IPI:IPI00375359 PIR:A49651 PIR:JN0599
RefSeq:NP_001191676.1 RefSeq:NP_002904.3 UniGene:Hs.507475 PDB:2EBU
PDB:2K6G PDB:2K7F PDBsum:2EBU PDBsum:2K6G PDBsum:2K7F
ProteinModelPortal:P35251 SMR:P35251 IntAct:P35251 STRING:P35251
PhosphoSite:P35251 DMDM:56757608 PaxDb:P35251 PRIDE:P35251
DNASU:5981 Ensembl:ENST00000349703 Ensembl:ENST00000381897
GeneID:5981 KEGG:hsa:5981 UCSC:uc003gtx.2 UCSC:uc003gty.2 CTD:5981
GeneCards:GC04M039291 HGNC:HGNC:9969 HPA:CAB009520 MIM:102579
neXtProt:NX_P35251 PharmGKB:PA34338 HOGENOM:HOG000013116
HOVERGEN:HBG004167 InParanoid:P35251 OMA:GQINFPG OrthoDB:EOG4D26P3
ChiTaRS:RFC1 EvolutionaryTrace:P35251 GenomeRNAi:5981 NextBio:23281
PMAP-CutDB:P35251 ArrayExpress:P35251 Bgee:P35251 CleanEx:HS_RFC1
Genevestigator:P35251 GermOnline:ENSG00000035928 Uniprot:P35251
Length = 1148
Score = 654 (235.3 bits), Expect = 1.5e-65, Sum P(2) = 1.5e-65
Identities = 179/516 (34%), Positives = 267/516 (51%)
Query: 278 RASKPMKALAQAESKKS-VEKVAASLPK--KSPQNIEAKSTSAPKAPIERMKTVASPAKR 334
R P K ++ESKKS SL K K ++ KS K + + S A+
Sbjct: 515 RKISPSKK--ESESKKSRPTSKRDSLAKTIKKETDVFWKSLDF-KEQVAEETSGDSKARN 571
Query: 335 KGQNIQQS---SLTWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHWNEKFLDTG--TKR 386
+ ++ +L W +KY+P + I+G +Q +L WL +W + + +
Sbjct: 572 LADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAK 631
Query: 387 NGK--KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--IS 442
GK ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K+ K ++
Sbjct: 632 FGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVA 691
Query: 443 KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLXXXXXX 501
+ + N SIK SN A S+ +KH LIMDEVDGM+ DRGGI +L
Sbjct: 692 ESL---NNTSIKGFYSNGAASSVS--TKH---ALIMDEVDGMAGNEDRGGIQELIGLIKH 743
Query: 502 XXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEEL 561
NDR K++SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+
Sbjct: 744 TKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEI 803
Query: 562 ADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGG 619
N DIR ++ L + YD + + KD + PF K+F G
Sbjct: 804 ILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETA 863
Query: 620 KLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNV 679
+ + ++ DL D + PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ +
Sbjct: 864 HMSLVDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDS 923
Query: 680 QIRRNXXXXXXXXXXXASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLL 739
QIR + ++P LM G + Q F F WLGK+S+ GK+ R++
Sbjct: 924 QIRSKQNWSLLPAQAIYASVLPGELMRGY---MTQ----FPTFPSWLGKHSSTGKHDRIV 976
Query: 740 EDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
+DL H S ++ + T+ +DY SLL L +PL
Sbjct: 977 QDLALH--MSLRTYSSKRTVNMDYLSLLRDALVQPL 1010
Score = 293 (108.2 bits), Expect = 9.5e-22, Sum P(2) = 9.5e-22
Identities = 65/188 (34%), Positives = 108/188 (57%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ ++ R+ P G KE+P+GA +CL GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+V
Sbjct: 382 YRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNV 441
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVA 299
SKKTNYL+ D +KS KA LGT + EDGL ++IR K+ + + ++K
Sbjct: 442 SKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGKKSKYEIAVETEMKK-E 500
Query: 300 ASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKG--QNIQ-QSSLTWTE-KYRPKTP 355
+ L + +N++ K +P K +KR + I+ ++ + W ++ +
Sbjct: 501 SKLERTPQKNVQGKRKISPSKKESESKKSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVA 560
Query: 356 NEIVGNQQ 363
E G+ +
Sbjct: 561 EETSGDSK 568
Score = 48 (22.0 bits), Expect = 1.5e-65, Sum P(2) = 1.5e-65
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 46 MGRRKTSKYFATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKK 92
M R++ S Y K+ +++E K K E K +SSP KK
Sbjct: 322 MKRKEESSY----KEIEPVASKRKENAIKLKGETKTPKKTKSSPAKK 364
Score = 48 (22.0 bits), Expect = 1.5e-65, Sum P(2) = 1.5e-65
Identities = 21/74 (28%), Positives = 35/74 (47%)
Query: 4 DIRKWF-LKPHSKDKDNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQKP 62
DIRK+F + P K + T+ N E T S+ E++ +K K + +
Sbjct: 2 DIRKFFGVIPSGKKLVSETVKKN------EKTKSD-----EETLKAKKGIKEIKVNSSRK 50
Query: 63 EDGGEKEELPAKRK 76
ED K++ P+K+K
Sbjct: 51 EDDF-KQKQPSKKK 63
Score = 38 (18.4 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 90 LKKFHKAXXXXXXFVPPSVKKNSVGATPSKKLKSGSG 126
++KF V +VKKN + + LK+ G
Sbjct: 3 IRKFFGVIPSGKKLVSETVKKNEKTKSDEETLKAKKG 39
>GENEDB_PFALCIPARUM|PFB0895c [details] [associations]
symbol:PFB0895c "replication factor C subunit 1,
putative" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 621 (223.7 bits), Expect = 4.3e-63, Sum P(2) = 4.3e-63
Identities = 186/554 (33%), Positives = 275/554 (49%)
Query: 210 FVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA-------GAKSTKAKE 262
FVI+G + R+E + IK HGG V +VS KTNYL+ E + G K TKA E
Sbjct: 218 FVITGVFKNFTRDELQSKIKEHGGSVMTAVSTKTNYLVHGEYLEDGRLFNEGRKYTKAFE 277
Query: 263 LGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPI 322
L + ++ + +K L Q + + +K AS K+ +N + K+ + K
Sbjct: 278 LQQQNKSN---IKILNEEELLKLLPQTDQTQENDKTYASDTIKT-ENKD-KNYNYEK--- 329
Query: 323 ERMKTVASPAKRKGQNIQQSSLT--WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL 380
+ K + K+ N Q L W EKYRPK NE+VGN Q V +L WLA W + +
Sbjct: 330 -KDKNY-NYEKKDTHNTQNEILNQLWVEKYRPKNLNELVGNNQNVIKLQNWLASWEDVCI 387
Query: 381 DTGTKRNGKKQNDASAE----KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436
G K+ +K E + A+LSG G+GKTT AK+V + G+ IE NASD R K
Sbjct: 388 K-GIKKPAQKTFRGIFENVNARCALLSGPAGIGKTTTAKIVSEASGYNVIEFNASDERNK 446
Query: 437 ADA-KISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADL 495
A KIS+ G SI L +N L+ KT +IMDEVDGMS+GD+GG +
Sbjct: 447 AAVEKISEMATGGY--SIMSL-NNRKLT---------KTCIIMDEVDGMSSGDKGGSTAI 494
Query: 496 XXXXXXXXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNE 555
NDR + K+++L N C DL+F P+K + KRL++I EG+ +
Sbjct: 495 LKLIEKTKCPIICICNDRQNNKMRTLANKCYDLKFSMPQKNSVVKRLLEICKKEGIMMEP 554
Query: 556 IALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD-EDIS-PFTAVDKL 613
ALE L + GDIR +N LQ +S + + I++ D+++ L +S K+ + ++ PF KL
Sbjct: 555 NALELLWESTCGDIRQMLNTLQLLSKTYTRIQFLDLKKELNNSNKNIQSLANPFEITLKL 614
Query: 614 FGFN-GGKLRMDERIDLSMSDPDLVPLLIQENYIN-YRPSSAGRDEVKRLSLIARAAESI 671
FN KL + E +DL D +L+P I ENY N + + + + ++ ++ A +
Sbjct: 615 LNFNESSKLNIREIMDLFFVDYELIPYFISENYTNVFNETDKSSASLNKWNVFSQIAHDL 674
Query: 672 SDGDIFNVQIRRNXXXXXXXXXXXASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNST 731
S D ++ N SC+ P + + + G NF GK ST
Sbjct: 675 SLADKIKYNMKSNMDFALLPHFAILSCVCPVMRIKILKSFMS-GRVNFPTA---FGKIST 730
Query: 732 MGKNLRLLEDLHFH 745
KN RLL +L F+
Sbjct: 731 FNKNKRLLNELCFN 744
Score = 46 (21.3 bits), Expect = 4.3e-63, Sum P(2) = 4.3e-63
Identities = 23/116 (19%), Positives = 40/116 (34%)
Query: 18 DNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQKPEDGGEKEELPAKRKA 77
DN +T +N+ N ++ R + S+ + + +K L + K
Sbjct: 139 DNKVTKEDTKSNNVSPKNEI----NKSNVKRERESEQYEISSENDTVSSKKNVLISPAKK 194
Query: 78 EKDDGKSVRSSPLKKFHKAXXXXXXFVPPSVKKNSVGATPSKKLKSGSGRAVAQKS 133
+K + + L+KF FV V KN K+K G + S
Sbjct: 195 QKTQNNN--NEDLQKFDYLPFHNQKFVITGVFKNFTRDELQSKIKEHGGSVMTAVS 248
>UNIPROTKB|O96271 [details] [associations]
symbol:PFB0895c "Replication factor C subunit 1, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 621 (223.7 bits), Expect = 4.3e-63, Sum P(2) = 4.3e-63
Identities = 186/554 (33%), Positives = 275/554 (49%)
Query: 210 FVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA-------GAKSTKAKE 262
FVI+G + R+E + IK HGG V +VS KTNYL+ E + G K TKA E
Sbjct: 218 FVITGVFKNFTRDELQSKIKEHGGSVMTAVSTKTNYLVHGEYLEDGRLFNEGRKYTKAFE 277
Query: 263 LGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPI 322
L + ++ + +K L Q + + +K AS K+ +N + K+ + K
Sbjct: 278 LQQQNKSN---IKILNEEELLKLLPQTDQTQENDKTYASDTIKT-ENKD-KNYNYEK--- 329
Query: 323 ERMKTVASPAKRKGQNIQQSSLT--WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL 380
+ K + K+ N Q L W EKYRPK NE+VGN Q V +L WLA W + +
Sbjct: 330 -KDKNY-NYEKKDTHNTQNEILNQLWVEKYRPKNLNELVGNNQNVIKLQNWLASWEDVCI 387
Query: 381 DTGTKRNGKKQNDASAE----KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436
G K+ +K E + A+LSG G+GKTT AK+V + G+ IE NASD R K
Sbjct: 388 K-GIKKPAQKTFRGIFENVNARCALLSGPAGIGKTTTAKIVSEASGYNVIEFNASDERNK 446
Query: 437 ADA-KISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADL 495
A KIS+ G SI L +N L+ KT +IMDEVDGMS+GD+GG +
Sbjct: 447 AAVEKISEMATGGY--SIMSL-NNRKLT---------KTCIIMDEVDGMSSGDKGGSTAI 494
Query: 496 XXXXXXXXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNE 555
NDR + K+++L N C DL+F P+K + KRL++I EG+ +
Sbjct: 495 LKLIEKTKCPIICICNDRQNNKMRTLANKCYDLKFSMPQKNSVVKRLLEICKKEGIMMEP 554
Query: 556 IALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD-EDIS-PFTAVDKL 613
ALE L + GDIR +N LQ +S + + I++ D+++ L +S K+ + ++ PF KL
Sbjct: 555 NALELLWESTCGDIRQMLNTLQLLSKTYTRIQFLDLKKELNNSNKNIQSLANPFEITLKL 614
Query: 614 FGFN-GGKLRMDERIDLSMSDPDLVPLLIQENYIN-YRPSSAGRDEVKRLSLIARAAESI 671
FN KL + E +DL D +L+P I ENY N + + + + ++ ++ A +
Sbjct: 615 LNFNESSKLNIREIMDLFFVDYELIPYFISENYTNVFNETDKSSASLNKWNVFSQIAHDL 674
Query: 672 SDGDIFNVQIRRNXXXXXXXXXXXASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNST 731
S D ++ N SC+ P + + + G NF GK ST
Sbjct: 675 SLADKIKYNMKSNMDFALLPHFAILSCVCPVMRIKILKSFMS-GRVNFPTA---FGKIST 730
Query: 732 MGKNLRLLEDLHFH 745
KN RLL +L F+
Sbjct: 731 FNKNKRLLNELCFN 744
Score = 46 (21.3 bits), Expect = 4.3e-63, Sum P(2) = 4.3e-63
Identities = 23/116 (19%), Positives = 40/116 (34%)
Query: 18 DNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQKPEDGGEKEELPAKRKA 77
DN +T +N+ N ++ R + S+ + + +K L + K
Sbjct: 139 DNKVTKEDTKSNNVSPKNEI----NKSNVKRERESEQYEISSENDTVSSKKNVLISPAKK 194
Query: 78 EKDDGKSVRSSPLKKFHKAXXXXXXFVPPSVKKNSVGATPSKKLKSGSGRAVAQKS 133
+K + + L+KF FV V KN K+K G + S
Sbjct: 195 QKTQNNN--NEDLQKFDYLPFHNQKFVITGVFKNFTRDELQSKIKEHGGSVMTAVS 248
>UNIPROTKB|E2QW76 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:AAEX03002535
Ensembl:ENSCAFT00000025512 Uniprot:E2QW76
Length = 1152
Score = 628 (226.1 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 176/550 (32%), Positives = 273/550 (49%)
Query: 241 KKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAA 300
KK+ Y + E A K K+K TP + G R P K ++++ + K +
Sbjct: 482 KKSKYEIAVE--AEMKKEKSKLERTPQKKDQGK----RKISPTKKESESKRSRLTPKKDS 535
Query: 301 SLPK-KSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQS--SLTWTEKYRPKTPNE 357
S+ K ++ + + + E + G + + +L W +KY+P +
Sbjct: 536 SIKSVKKETSVLWRCLNFEEQVAEETNDDSRARNLAGDSSENKVENLLWVDKYKPTSLKT 595
Query: 358 IVG---NQQLVKQLHTWLAHWNEKFLDTGTK--RNGK--KQNDASAEKAAILSGSPGMGK 410
I+G +Q +L WL +W+ + + + GK ++D S+ KAA+LSG PG+GK
Sbjct: 596 IIGQQGDQSCANKLLRWLQNWHRGPPEDKKRAAKFGKFAGKDDGSSFKAALLSGPPGVGK 655
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVS-NEALSANMDR 468
TT A LVCQ LG+ +E+NASD+R K K + + S N SI S ++ S
Sbjct: 656 TTTASLVCQELGYSYVELNASDTRSKNSLK--EVVAESLNNTSITGFYSTSQHGSDGAAH 713
Query: 469 SKHPKTVLIMDEVDGMSAG-DRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYCSD 527
S K LIMDEVDGM+ DRGGI +L NDR K++SLV+YC D
Sbjct: 714 SVGSKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFD 773
Query: 528 LRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIK 587
LRF++PR ++I +M IA EGL++ A+ E+ N DIR ++ L +
Sbjct: 774 LRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALT 833
Query: 588 YDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENY 645
YD + + KD + PF K+F G + + ++ DL D + PL +QENY
Sbjct: 834 YDQAKADSHRAKKDIRLGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENY 893
Query: 646 INYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNXXXXXXXXXXXASCIIPAALM 705
++ +P +AG D K L L++RAA+SI DGD+ + QIR + ++P LM
Sbjct: 894 LHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDRQIRSKQNWSLLPTQAIYASVLPGELM 953
Query: 706 HGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFS 765
G + Q F F WLGK+S+ GK+ R+++DL H S ++ + T+ +DY S
Sbjct: 954 RGY---MTQ----FPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTYSSKRTVNMDYLS 1004
Query: 766 LLLKQLTEPL 775
+ L +PL
Sbjct: 1005 HIRDALVQPL 1014
Score = 303 (111.7 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 70/173 (40%), Positives = 108/173 (62%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+V
Sbjct: 379 YRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNV 438
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA---LA-QAESKKSV 295
SKKTNYL+ D +KS KA LGT + EDGL ++IR K+ +A +AE KK
Sbjct: 439 SKKTNYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIRTMPGKKSKYEIAVEAEMKKEK 498
Query: 296 EKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKG-QNIQ-QSSLTW 346
K+ + P+K Q + S K E ++ +P K ++++ ++S+ W
Sbjct: 499 SKLERT-PQKKDQG--KRKISPTKKESESKRSRLTPKKDSSIKSVKKETSVLW 548
Score = 48 (22.0 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 50 KTSKY-FATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKK 92
K SKY A + + ++ + E P K KD GK + SP KK
Sbjct: 482 KKSKYEIAVEAEMKKEKSKLERTPQK----KDQGKR-KISPTKK 520
Score = 37 (18.1 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 90 LKKFHKAXXXXXXFVPPSVKKNSVGATPSKKLKSGSG 126
++KF V +VKKN + + LKS G
Sbjct: 3 IRKFFGVIPSGKKPVTETVKKNEKTKSAEETLKSKKG 39
>ASPGD|ASPL0000007447 [details] [associations]
symbol:uvsF species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IMP] [GO:0005663 "DNA replication
factor C complex" evidence=ISA] [GO:0006260 "DNA replication"
evidence=ISA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0006260 EMBL:AACD01000107 EMBL:BN001301
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 HOGENOM:HOG000164552
OrthoDB:EOG4WDHM8 RefSeq:XP_663907.1 ProteinModelPortal:Q5AZH7
STRING:Q5AZH7 EnsemblFungi:CADANIAT00006686 GeneID:2871090
KEGG:ani:AN6303.2 OMA:PKMKPFD Uniprot:Q5AZH7
Length = 1092
Score = 613 (220.8 bits), Expect = 1.2e-61, Sum P(2) = 1.2e-61
Identities = 178/576 (30%), Positives = 283/576 (49%)
Query: 184 GERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKT 243
G+ +DP G E+P GA +CL GLTFV +G LD+L REE + L+KR+GG+VT + S KT
Sbjct: 308 GKSRDPV-SGGAELPVGAENCLAGLTFVFTGVLDTLGREEGQALVKRYGGKVTTAPSGKT 366
Query: 244 NYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM----KALAQAESKKSVEKVA 299
++++ D +K + ++E+GLF++IR KA + E+KK E
Sbjct: 367 SFVVLGSDAGPSKLATISKHKLKTISEEGLFELIRRLPANGGDGKAAEKYEAKKKEED-- 424
Query: 300 ASLPKKSPQ-NIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEI 358
+ K + + + E K A + + K K +N L WT KY P + N I
Sbjct: 425 EKIRKMAAEIDAEEKRNEAERRKEVKSGQTTQDVKDKKENNADDQL-WTSKYAPTSLNMI 483
Query: 359 VGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVC 418
GN+ V++L WL +W + TK GK + + ++ ++ G PG+GKTTAA LV
Sbjct: 484 CGNKGAVEKLQAWLRNWRKSAKANFTKP-GK--DGSGLYRSVMIHGPPGIGKTTAAHLVA 540
Query: 419 QMLGFQAIEVNASDSRGKADAKISKGI-GGSNANSIKELVSNEALSANMDRSKHPKTVLI 477
++ G+ +E NASD+R K + G+ G + S++ S + ++ K VLI
Sbjct: 541 KLEGYDVVESNASDTRSKK--LVESGLLGVLDTTSLQGYFSTS--NKKVESGKK-NLVLI 595
Query: 478 MDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQE 537
MDEVDGMSAGDRGG+ + N+R K+K + ++ FR+P ++
Sbjct: 596 MDEVDGMSAGDRGGVGAMAAIAKKTQIPLILICNERRLPKMKPFDHVTFEIPFRRPTVEQ 655
Query: 538 IAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV----------IK 587
+ RL+ I E +++ L+ L + + DIR IN L + L S +
Sbjct: 656 VRARLLTICFREKMKIPPQVLDSLIEGTHADIRQVINMLSAVRLDRSEQGDQTGQDYSLD 715
Query: 588 YDDIRQRLLSSAKDEDISPFTAVDKLFG---FN-GGKLRMDERIDLSMSDPDLVPLLIQE 643
YD +Q + K + P+ V K+ F+ ++++ +L +D + L++QE
Sbjct: 716 YDQGKQMSKAWEKHIILKPWDIVGKILNPQMFSQSSTATLNDKSELYFNDHEFSYLMLQE 775
Query: 644 NYINYRPSSA----GRD-EVKRLSLIARAAESISDGDIFNVQIRRNXXXXXXXXXXXA-S 697
NY+ +P+ A G++ ++K L L AA SISDGD+ + I + S
Sbjct: 776 NYLRTKPTRANNYEGKERKLKLLELADNAASSISDGDLVDRMIHGSQQQWSLMPTHAIFS 835
Query: 698 CIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMG 733
+ PA+ M G ER F WLG+NS G
Sbjct: 836 FVRPASFMFGNMM-----ERP--AFTSWLGQNSKQG 864
Score = 52 (23.4 bits), Expect = 1.2e-61, Sum P(2) = 1.2e-61
Identities = 25/110 (22%), Positives = 34/110 (30%)
Query: 41 GGHESMGRRKTSKYFATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKAXXXX 100
GG S G + K+K K +E DD V +P+ + K
Sbjct: 10 GGKSSQGSASSPTKPPAKKEKQTPARNKRGRKVVNDSEDDDDVVVTDAPVSRA-KPSSKS 68
Query: 101 XXFVPPSVKKNSVGATPSKKLKSGSGRAVAQKSVXXXXXXXXXVKKTESP 150
VP + S K K GR + + KTESP
Sbjct: 69 KPAVPEGEPTTASDYFASSKKK---GRTKSSNADTNNKPSKSSATKTESP 115
Score = 40 (19.1 bits), Expect = 2.2e-60, Sum P(2) = 2.2e-60
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 186 RKDPPHKGEKEVPEGAP 202
R P K + VPEG P
Sbjct: 61 RAKPSSKSKPAVPEGEP 77
>RGD|620619 [details] [associations]
symbol:Rfc1 "replication factor C (activator 1) 1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0019904 "protein domain specific
binding" evidence=IPI] [GO:0043234 "protein complex" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 RGD:620619 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0043234 GO:GO:0005730
GO:GO:0006260 GO:GO:0043565 GO:GO:0000122 GO:GO:0003690
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
HSSP:P26996 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
HOVERGEN:HBG004167 EMBL:AF030050 IPI:IPI00210191 RefSeq:NP_445999.1
UniGene:Rn.103272 ProteinModelPortal:Q9Z2R7 STRING:Q9Z2R7
GeneID:89809 KEGG:rno:89809 UCSC:RGD:620619 NextBio:617672
Genevestigator:Q9Z2R7 Uniprot:Q9Z2R7
Length = 1104
Score = 557 (201.1 bits), Expect = 2.8e-55, Sum P(2) = 2.8e-55
Identities = 169/547 (30%), Positives = 263/547 (48%)
Query: 241 KKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAA 300
KK+ Y + E A K K+K TP + G R P K + E KKS
Sbjct: 482 KKSKYEIAAE--AEMKKEKSKLERTPQKNDQGK----RKLSPTKR--ELEPKKSKLTPLK 533
Query: 301 SLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVG 360
P+K+ ++ + P+ + + A R + L W +KY+P + I+G
Sbjct: 534 HSPRKA---VKEEERVCPRGLDAKEPHGSHSASR------EECLLWVDKYKPTSLKNIIG 584
Query: 361 ---NQQLVKQLHTWLAHWNEKFLDTGTKRN-GK--KQNDASAEKAAILSGSPGMGKTTAA 414
+Q +L WL +W++ + GK ++D S+ KAA+LSG PG+GKTT A
Sbjct: 585 QQGDQSCANKLLRWLRNWHKSSPEEKKHAKFGKVASKDDGSSFKAALLSGPPGVGKTTTA 644
Query: 415 KLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHP 472
LVCQ LG+ +E+NASD+R K K +++ + N SIK ++ A S ++ ++H
Sbjct: 645 SLVCQELGYSYVELNASDTRSKNSLKAIVAESL---NNTSIKGFYTSGA-SPSVS-ARH- 698
Query: 473 KTVLIMDEVDGMSAG-DRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYCSDLRFR 531
LIMDEVDGM+ DRGGI +L NDR K++SLV+YC DLRF+
Sbjct: 699 --ALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQ 756
Query: 532 KPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
+PR ++I ++ IA EGL++ A+ E+ N D+R ++ L V+ YD
Sbjct: 757 RPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKVLTYDQA 816
Query: 592 RQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYR 649
+ + KD + PF K+F G + + ++ DL D + PL +QENY++ +
Sbjct: 817 KADSQRAKKDIRLGPFDVTRKVFAAGEETPHMSLMDKSDLFFHDYSIAPLFVQENYLHVK 876
Query: 650 PSSAGRDEVKRLSLIARAAESISDGDIFNVQIR-RNXXXXXXXXXXXASCIIPAALMHGQ 708
P +AG D K L L++RAA+SI DGD+ QIR + C + G
Sbjct: 877 PVAAGGDMKKHLMLLSRAADSICDGDLVANQIRSKQNWSLSHTGHLRQRC--SWRVDEGL 934
Query: 709 RETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLL 768
++ Q + GW + R ++DL H S ++ + T+ +DY S +
Sbjct: 935 HVSVSQLPK-----AGWESTRLWASTD-RTVQDLSLH--MSLRTYSSKRTVNMDYLSHIR 986
Query: 769 KQLTEPL 775
L PL
Sbjct: 987 DALVRPL 993
Score = 325 (119.5 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 100/314 (31%), Positives = 159/314 (50%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+EREEA+ LI+R+GG+VTG+V
Sbjct: 379 YRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNV 438
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA----LAQAESKKSV 295
SKKT+YL+ D +KS KA LGT L EDGL D+IR K+ A+AE KK
Sbjct: 439 SKKTSYLVMGRDSRQSKSDKAAALGTKILDEDGLLDLIRTMPGKKSKYEIAAEAEMKKEK 498
Query: 296 EKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQN-IQQSSLTWTEKYRPKT 354
K+ + P+K+ Q + S K +E K+ +P K + +++ K
Sbjct: 499 SKLERT-PQKNDQG--KRKLSPTKRELEPKKSKLTPLKHSPRKAVKEEERVCPRGLDAKE 555
Query: 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAA 414
P+ G+ ++ L W +K+ T K +Q D S +L K++
Sbjct: 556 PH---GSHSASRE-ECLL--WVDKYKPTSLKNIIGQQGDQSCANK-LLRWLRNWHKSSPE 608
Query: 415 KLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSI--KEL-VSNEALSANMDRSKH 471
+ G A + + S + A G+G + S+ +EL S L+A+ RSK+
Sbjct: 609 EKKHAKFGKVASKDDGSSFKA-ALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKN 667
Query: 472 PKTVLIMDEVDGMS 485
++ + ++ S
Sbjct: 668 SLKAIVAESLNNTS 681
Score = 50 (22.7 bits), Expect = 2.8e-55, Sum P(2) = 2.8e-55
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 69 EELPAKRKAEKDDGKSVRSSPLK-KFHKAXXXXXXFVPPSVKKNSVGATPSKKLKSGSGR 127
+E P +KA KD + SP K + KA P+ + S+G K G GR
Sbjct: 235 DEEPKTKKARKDSEEGESFSPAKAELSKAAKQKS----PANEHFSIGRKTYSPAKYGKGR 290
Score = 41 (19.5 bits), Expect = 2.4e-54, Sum P(2) = 2.4e-54
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 44 ESMGRRKTSKYFATDKQKPEDGG-EKEELPAKR------KAEKDDGKSVRSSPLKK 92
E+ K S A K + E+ + E L AKR K EK + + SP K+
Sbjct: 306 EACSSLKASSKLALMKAQEENSHTDTELLAAKRESAIEPKGEKTTPRKTKGSPTKR 361
Score = 40 (19.1 bits), Expect = 3.1e-54, Sum P(2) = 3.1e-54
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 50 KTSKY-FATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKK 92
K SKY A + + ++ + E P K D GK + SP K+
Sbjct: 482 KKSKYEIAAEAEMKKEKSKLERTPQKN----DQGKR-KLSPTKR 520
>POMBASE|SPBC23E6.07c [details] [associations]
symbol:rfc1 "DNA replication factor C complex subunit
Rfc1" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IGI] [GO:0006272 "leading strand elongation" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0003689 "DNA clamp loader activity" evidence=IC]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357
PomBase:SPBC23E6.07c Pfam:PF00533 GO:GO:0005524 GO:GO:0005730
GO:GO:0051301 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0007049
GO:GO:0000790 GO:GO:0043596 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389 KO:K10754
eggNOG:COG5275 EMBL:AB027931 PIR:T39941 RefSeq:NP_596607.1
ProteinModelPortal:O60182 IntAct:O60182 STRING:O60182
EnsemblFungi:SPBC23E6.07c.1 GeneID:2540426 KEGG:spo:SPBC23E6.07c
HOGENOM:HOG000164552 OMA:KLRMDER OrthoDB:EOG4WDHM8 NextBio:20801553
Uniprot:O60182
Length = 934
Score = 517 (187.1 bits), Expect = 1.8e-47, P = 1.8e-47
Identities = 163/546 (29%), Positives = 261/546 (47%)
Query: 254 GAKSTKAKELGTPF--LTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIE 311
G K T A + T F L E+ + K K A E + + LP
Sbjct: 268 GGKVTGAPSVRTDFILLGENAGPRKVETIKQHKIPAINED--GLFYLITHLPASGGTGAA 325
Query: 312 AKSTSAPKAPIERMKTVASPAKRKGQNIQQS--SLTWTEKYRPKTPNEIVGNQQLVKQLH 369
A++ K E+ K + + A+ N ++S S WT KY P + +I GN+ +V++L
Sbjct: 326 AQAAQQKKEQEEK-KILETVARMDDSNKKESQPSQIWTSKYAPTSLKDICGNKGVVQKLQ 384
Query: 370 TWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429
WL +++ + + N + KA +LSG PG+GKTTAA LV ++ G+ +E+N
Sbjct: 385 KWLQDYHK---NRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGYDVLELN 441
Query: 430 ASDSRGKA--DAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG 487
ASD+R K D ++ G +++ S+ +A +M +S+ VLIMDE+DGMS+G
Sbjct: 442 ASDTRSKRLLDEQL---FGVTDSQSLAGYFGTKANPVDMAKSR---LVLIMDEIDGMSSG 495
Query: 488 DRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
DRGG+ L NDR KL+ L DLRFR+P + R+M IA
Sbjct: 496 DRGGVGQLNMIIKKSMIPIICICNDRAHPKLRPLDRTTFDLRFRRPDANSMRSRIMSIAY 555
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPF 607
EGL+++ A+++L D+R IN L LS S + + + + +S K + P+
Sbjct: 556 REGLKLSPQAVDQLVQGTQSDMRQIINLLSTYKLSCSEMTPQNSQAVIKNSEKHIVMKPW 615
Query: 608 TAVDK-LFG--FN-GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRD-----EV 658
+ L G F+ K ++++++L +D + L++QENY+N P ++ +
Sbjct: 616 DICSRYLHGGMFHPSSKSTINDKLELYFNDHEFSYLMVQENYLNTTPDRIRQEPPKMSHL 675
Query: 659 KRLSLIARAAESISDGDIFNVQIRR-NXXXXXXXXXXXASCIIPAALMHGQRETLEQGER 717
K L LI+ AA S SD D+ + I SC+ PA+ + G G R
Sbjct: 676 KHLELISSAANSFSDSDLVDSMIHGPQQHWSLMPTHALMSCVRPASFVAGS------GSR 729
Query: 718 NFNRFGGWLGKNSTMGKNLRLLEDLHFH---HLASRKSKLGRDTLRLDYFSLLLKQLTEP 774
RF WLG NS K R+L ++ H +++ K L + + + Y SL +K T
Sbjct: 730 QI-RFTNWLGNNSKTNKLYRMLREIQVHMRLKVSANKLDLRQHYIPILYESLPVKLSTGH 788
Query: 775 LRVLPK 780
V+P+
Sbjct: 789 SDVVPE 794
Score = 222 (83.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 58/163 (35%), Positives = 86/163 (52%)
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
G K VPEG DCL G++FVI+G L++L R+EA DLIK++GG+VTG+ S +T+++L E+
Sbjct: 229 GSKPVPEGNSDCLSGISFVITGILETLTRQEATDLIKQYGGKVTGAPSVRTDFILLGENA 288
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIR---ASKPMKALAQAESKKSVEKVAASLPKKSPQN 309
K K+ P + EDGLF +I AS A AQA +K ++ L + +
Sbjct: 289 GPRKVETIKQHKIPAINEDGLFYLITHLPASGGTGAAAQAAQQKKEQEEKKILETVARMD 348
Query: 310 IEAKSTSAPKAPIERMKTVASPAKR--KGQNIQQSSLTWTEKY 350
K S P + I K + K + + Q W + Y
Sbjct: 349 DSNKKESQP-SQIWTSKYAPTSLKDICGNKGVVQKLQKWLQDY 390
>WB|WBGene00004337 [details] [associations]
symbol:rfc-1 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA] [GO:0005663
"DNA replication factor C complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 GO:GO:0005524 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006260 GO:GO:0000003 GO:GO:0006974 eggNOG:COG0470
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 EMBL:Z75532 PIR:T20230
RefSeq:NP_001256606.1 ProteinModelPortal:Q18841 SMR:Q18841
IntAct:Q18841 MINT:MINT-228102 STRING:Q18841 PaxDb:Q18841
EnsemblMetazoa:C54G10.2a GeneID:179967 KEGG:cel:CELE_C54G10.2
UCSC:C54G10.2 CTD:179967 WormBase:C54G10.2a HOGENOM:HOG000017534
InParanoid:Q18841 OMA:DYAPMLR NextBio:907580 Uniprot:Q18841
Length = 839
Score = 492 (178.3 bits), Expect = 2.4e-46, Sum P(2) = 2.4e-46
Identities = 144/472 (30%), Positives = 231/472 (48%)
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPMK-ALAQAESKKSVEKVAASLPKKSPQNIEAKS 314
K T K TP E ++ P K ++ + K++ +K A S+ KK P + ++S
Sbjct: 199 KKTPEKRKETPKKKE---LPSVKKEFPKKQSIPVKKEKETPQKKALSV-KKDPPKVTSES 254
Query: 315 TSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVG---NQQLVKQLHTW 371
+S+ + + V P K G +L+W +KY+PK E+VG ++ + +L W
Sbjct: 255 SSSSQ--VSTSSVVFQP-KPSGP---PPALSWVDKYKPKRMGELVGQNGDKSPINKLLEW 308
Query: 372 LAHWNEKFLDTGTKRNGKK------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA 425
+ W + L G K K D ++ KAA+LSGSPG+GKTT A + CQ LG Q
Sbjct: 309 IKDWAKHNLGEGAKIKKPKPAPWMSSQDGTSFKAALLSGSPGVGKTTCAYMACQQLGLQL 368
Query: 426 IEVNASDSRGKA--DAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG 483
+E+NASD R K +AKI + + GS+ I++ + + ++ H +LIMDEVDG
Sbjct: 369 VEMNASDVRSKKHLEAKIGE-LSGSH--QIEQFFGAKKCAPQDNQKVHH--ILIMDEVDG 423
Query: 484 MSAG-DRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRL 542
MS DR GI++L NDR K+++L NYC DLRF KPR + I R+
Sbjct: 424 MSGNEDRAGISELIQIIKESKIPIICICNDRQHPKIRTLANYCYDLRFPKPRVETIRSRM 483
Query: 543 MQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDE 602
M I + E +++ + L+E+ + D+R I LQ S + I Q KD
Sbjct: 484 MTICSQEKMKIGKEELDEIIELSGHDVRQTIYNLQMRSKGVGA----KINQ------KDM 533
Query: 603 DISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLS 662
+ F+A +L + + E+ ++ +D ++PL +Q+NY+N + ++ +
Sbjct: 534 AVDAFSAARRLLD---SRTTLMEKQEMFFTDYGIMPLFVQDNYLNMKNEK--HSPIQAIR 588
Query: 663 LIARAAESISDGDIFNVQIRRNXXXXXXXXXXXASCIIPAALMHGQRETLEQ 714
I +AA+ IS GD+ + QIR S +PA G + + Q
Sbjct: 589 GIRKAADFISLGDLIDRQIRGGGSWKLLNEQSMISAALPAIATGGHLKAMIQ 640
Score = 183 (69.5 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 53/177 (29%), Positives = 85/177 (48%)
Query: 600 KDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
KD + F+A +L + + E+ ++ +D ++PL +Q+NY+N + ++
Sbjct: 531 KDMAVDAFSAARRLLD---SRTTLMEKQEMFFTDYGIMPLFVQDNYLNMKNEK--HSPIQ 585
Query: 660 RLSLIARAAESISDGDIFNVQIRRNXXXXXXXXXXXASCIIPAALMHGQRETLEQGERNF 719
+ I +AA+ IS GD+ + QIR S +PA G + + Q
Sbjct: 586 AIRGIRKAADFISLGDLIDRQIRGGGSWKLLNEQSMISAALPAIATGGHLKAMIQ----- 640
Query: 720 NRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F WLGKNST GK RLL+ L H HL K G + DY +L +++T+PL
Sbjct: 641 --FPSWLGKNSTAGKRKRLLQQLVQHTHL---KVSAGTHSFATDYAPMLRQKITKPL 692
Score = 57 (25.1 bits), Expect = 2.4e-46, Sum P(2) = 2.4e-46
Identities = 22/68 (32%), Positives = 28/68 (41%)
Query: 57 TDKQKPEDGGEKEELPAKRKA-----EKDDGKSVRSSPLKKFHKAXXXXXXFVPPSVKKN 111
TD++K GG+KE LP +K + S R P KK K F KN
Sbjct: 81 TDEKKKRKGGKKE-LPVGQKTLDYMFKPSSSSSKRDDPKKKVEKTLVNPADFF-----KN 134
Query: 112 SVGATPSK 119
S + SK
Sbjct: 135 SPAPSASK 142
Score = 57 (25.1 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 292 KKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRK 335
K S A+ LPK +P+ +E T A K P+E + K K
Sbjct: 133 KNSPAPSASKLPKVAPKTVEKPKTPAKK-PVEISPSTKENTKTK 175
Score = 37 (18.1 bits), Expect = 3.1e-44, Sum P(2) = 3.1e-44
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 48 RRKTSKYFATDKQKP----EDGGEKEELPAKRKAEKDDGK 83
++K + A + KP +D E+E P K+ A K K
Sbjct: 23 KQKKAATPAKKRTKPVVLTDDDEEEENAPQKKTAPKRSRK 62
Score = 37 (18.1 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 308 QNIEAKSTSAPKAPI--ERMKTVASPAKRK 335
+ I S S P E+ K A+PAK++
Sbjct: 5 RKIVVSSDSDDDMPFTQEKQKKAATPAKKR 34
>UNIPROTKB|F1N4T1 [details] [associations]
symbol:LOC514842 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA]
InterPro:IPR008921 InterPro:IPR013725 Pfam:PF08519 GO:GO:0005524
GO:GO:0005634 GO:GO:0006260 GeneTree:ENSGT00670000098003
GO:GO:0003689 SUPFAM:SSF48019 GO:GO:0005663 EMBL:DAAA02017468
IPI:IPI00706374 Ensembl:ENSBTAT00000019296 OMA:GSHADIR
Uniprot:F1N4T1
Length = 430
Score = 435 (158.2 bits), Expect = 2.3e-40, P = 2.3e-40
Identities = 106/301 (35%), Positives = 156/301 (51%)
Query: 478 MDEVDGMSAG-DRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQ 536
MDEVDGM+ DRGGI +L NDR K++SLV+YC DLRF++PR +
Sbjct: 1 MDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVE 60
Query: 537 EIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLL 596
+I +M IA EGL++ A+ E+ N DIR ++ L + YD +
Sbjct: 61 QIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLNMWCARNKALTYDQAKADSH 120
Query: 597 SSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAG 654
+ KD + PF K+F G + + ++ DL D + PL +QENYI+ +P +AG
Sbjct: 121 RAKKDIKLGPFDVARKVFVSGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPVAAG 180
Query: 655 RDEVKRLSLIARAAESISDGDIFNVQIRRNXXXXXXXXXXXASCIIPAALMHGQRETLEQ 714
D K L L++RAA+SI DGD+ + QIR + ++P LM G + Q
Sbjct: 181 GDMKKHLMLLSRAADSICDGDLVDRQIRNKQNWSLLPTQAIYASVLPGELMRGY---MTQ 237
Query: 715 GERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEP 774
F F WLGK S+MGK+ R ++DL H S ++ + T+ +DY S + L +P
Sbjct: 238 ----FPTFPSWLGKYSSMGKHDRTVQDLALH--MSLRTYSSKRTVNMDYLSHIRDALVQP 291
Query: 775 L 775
L
Sbjct: 292 L 292
>UNIPROTKB|H9L0H0 [details] [associations]
symbol:H9L0H0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005663
"DNA replication factor C complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] InterPro:IPR008921 InterPro:IPR013725
Pfam:PF08519 GO:GO:0005524 GO:GO:0006260
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GSHADIR EMBL:AADN02015914 EMBL:AADN02015915
Ensembl:ENSGALT00000023117 Uniprot:H9L0H0
Length = 421
Score = 406 (148.0 bits), Expect = 3.6e-37, P = 3.6e-37
Identities = 92/268 (34%), Positives = 147/268 (54%)
Query: 511 NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570
NDR K++SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR
Sbjct: 20 NDRNHPKIRSLVHYCFDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMNEIILAANQDIR 79
Query: 571 MAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERID 628
++ L + YD+ + + KD + PF V K+F G ++ + ++ D
Sbjct: 80 QVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGPFDVVRKVFAAGEEASRMSLIDKSD 139
Query: 629 LSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNXXXX 688
L D L PL +QENY++ +P++AG D K L L++RAA+SI DGD+ + QIR
Sbjct: 140 LFFHDYSLAPLFVQENYVHVKPAAAGGDLKKHLMLLSRAADSICDGDLVDKQIRTKQNWN 199
Query: 689 XXXXXXXASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLA 748
S ++P LM G + Q F F WLGK S+ GK+ R++++L H
Sbjct: 200 LLPTQAIYSSVLPGELMRGY---MAQ----FPVFPNWLGKFSSTGKHERIIQELAMHMSL 252
Query: 749 SRKSKLGRDTLRLDYFSLLLKQLTEPLR 776
++++ + T+ ++Y S L L +PL+
Sbjct: 253 RQRTQACKRTVNMEYLSHLRDALVQPLK 280
>ASPGD|ASPL0000006457 [details] [associations]
symbol:AN6694 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0051455
"attachment of spindle microtubules to kinetochore involved in
homologous chromosome segregation" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0007049
EMBL:BN001301 GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000112
ProteinModelPortal:P0C1D3 EnsemblFungi:CADANIAT00007479
HOGENOM:HOG000180892 OMA:YNEGFSN OrthoDB:EOG4S1XG8 Uniprot:P0C1D3
Length = 993
Score = 231 (86.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 85/334 (25%), Positives = 142/334 (42%)
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAA-SLPKKSPQNIEAKS 314
K+ K L P R A ++KS + SL +S + E K+
Sbjct: 168 KTCNGKALNVPLKKPSARVSYERLIASRSTTAPGRAQKSYYGIDIHSLLNESAK--EVKA 225
Query: 315 TSAPK-APIERMK-TVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWL 372
APK AP+ ++ ++ +P K ++ + S+ WTEKYR + E++G+++ + + WL
Sbjct: 226 AEAPKPAPVADVRPSIEAPIGDK-RSKKLSTAMWTEKYRARKYTELIGDERTNRSILRWL 284
Query: 373 AHWNEKFLDT--GTKRNGKKQNDASAE---KAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
W+ + K+N K ND K +L G PG+GKTT A + + G++ +E
Sbjct: 285 RGWDPIVYPSLARAKQNKKYNNDEEERPHRKVLLLCGPPGLGKTTLAHVCARQAGYEVLE 344
Query: 428 VNASDSRGK--ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS 485
+NASD R + +I +G N + N L R +++DEVDG+
Sbjct: 345 INASDERSRDVVKGRIRDALGTENVKGM-----NVELGEQKVRKVGRPVCVVVDEVDGVV 399
Query: 486 AGD----RGG----IADLXXXXXXXXXXXXXXXNDRYSQK------LKSLVNYCSDLRFR 531
+G GG + DL +D +K L+ L+ C+D+
Sbjct: 400 SGSGGSGEGGFMKALTDLVLLDQRNSARTSERASDGRKRKGDNFRFLRPLILVCNDVYHA 459
Query: 532 KPRKQEIAKRLMQIANAEGLEVNEIALEELADRV 565
R L Q + AE + V + LE + R+
Sbjct: 460 SLRP------LRQSSVAEIIHVRQAPLENVVSRM 487
>WB|WBGene00010676 [details] [associations]
symbol:K08F4.1 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0006974
GO:GO:0017111 eggNOG:COG0470 KO:K11269 GeneTree:ENSGT00550000075029
EMBL:Z68879 PIR:T23478 RefSeq:NP_501841.1 ProteinModelPortal:Q21350
SMR:Q21350 PaxDb:Q21350 EnsemblMetazoa:K08F4.1.1
EnsemblMetazoa:K08F4.1.2 EnsemblMetazoa:K08F4.1.3 GeneID:177879
KEGG:cel:CELE_K08F4.1 UCSC:K08F4.1.2 CTD:177879 WormBase:K08F4.1
HOGENOM:HOG000017144 InParanoid:Q21350 OMA:LRCDLST NextBio:898772
Uniprot:Q21350
Length = 850
Score = 211 (79.3 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 80/293 (27%), Positives = 134/293 (45%)
Query: 311 EAKSTSAPKAPIERM-KTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLH 369
E +A RM K +P++ + S W KY K ++++ + + + +
Sbjct: 229 EESRVKEQEAEFSRMLKETETPSEYENNKSHPESSLWVNKYEAKNFSDLLSDSTVNRNIL 288
Query: 370 TWLAHWNE-----KFLDT----GTKR-------NGKKQNDASAEKAAILSGSPGMGKTTA 413
TWL W+E K D G K NGK + +S K +LSG G+GK+T
Sbjct: 289 TWLKMWDECVFHQKVDDLLASLGEKEREVLHMDNGKIRRPSS--KMLLLSGPAGLGKSTL 346
Query: 414 AKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK 473
A++V + G+ I+VNASD+R AD ++K + G+ +K S +D + P
Sbjct: 347 ARIVARQAGYSTIDVNASDARTVAD--LNKVLEGA----VKT-------SRTLDADQRP- 392
Query: 474 TVLIMDEVDGMSAGD-RGGIADLXXXXXXXXXXXXXXX-NDRYSQKLKSL--VNYCSDLR 529
LI+DE+DG R + + N+ Y+ L+ L V +C L
Sbjct: 393 ACLILDEIDGTPIDTIRHLVRCIQATGKKAIRRPIIGICNNLYTPALRDLRGVAWCVQLV 452
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
K + +AKRL +I + E L + L +L + D+R +IN LQ+++++
Sbjct: 453 ATK--QDVLAKRLEEICDRERLRCDLSTLRKLCELCANDMRHSINTLQWVAVA 503
>SGD|S000004683 [details] [associations]
symbol:CTF18 "Subunit of a Ctf18 RFC-like complex"
species:4932 "Saccharomyces cerevisiae" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007064 "mitotic sister chromatid cohesion"
evidence=IGI;IMP] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003674
"molecular_function" evidence=ND] [GO:0043596 "nuclear replication
fork" evidence=IDA] [GO:0035753 "maintenance of DNA trinucleotide
repeats" evidence=IMP] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
SGD:S000004683 GO:GO:0005739 GO:GO:0005524 GO:GO:0003677
EMBL:BK006946 GO:GO:0006270 GO:GO:0043596 GO:GO:0000724 EMBL:Z49259
GO:GO:0017111 eggNOG:COG0470 GO:GO:0007064 OMA:YNEGFSN KO:K11269
GeneTree:ENSGT00550000075029 OrthoDB:EOG4HDX3F GO:GO:0031390
EMBL:L24514 PIR:S50340 RefSeq:NP_013795.1 ProteinModelPortal:P49956
SMR:P49956 DIP:DIP-5868N IntAct:P49956 MINT:MINT-626774
STRING:P49956 PaxDb:P49956 EnsemblFungi:YMR078C GeneID:855102
KEGG:sce:YMR078C CYGD:YMR078c HOGENOM:HOG000066044 NextBio:978425
Genevestigator:P49956 GermOnline:YMR078C GO:GO:0035753
Uniprot:P49956
Length = 741
Score = 144 (55.7 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 34/102 (33%), Positives = 54/102 (52%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK-FLDTGTKRNGKKQ-NDASAE-- 397
S W EK+RPK ++VGN++ +++ WL W F + K +K+ +D +
Sbjct: 112 SDTLWVEKWRPKKFLDLVGNEKTNRRMLGWLRQWTPAVFKEQLPKLPTEKEVSDMELDPL 171
Query: 398 -----KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434
K +L G PG+GKT+ A ++ + GF E+NASD R
Sbjct: 172 KRPPKKILLLHGPPGIGKTSVAHVIAKQSGFSVSEINASDER 213
Score = 115 (45.5 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 31/110 (28%), Positives = 54/110 (49%)
Query: 511 NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570
N+ Y+ L+ L +C + ++P + +RL I + E + + A+ +L D GD+R
Sbjct: 298 NNLYAPSLEKLKPFCEIIAVKRPSDTTLLERLNLICHKENMNIPIKAINDLIDLAQGDVR 357
Query: 571 MAINQLQYMSLSLSV--IKYDD----IRQRLLSSAKDEDISPFTAVDKLF 614
IN LQ+++ ++ D + SS KD IS F V++LF
Sbjct: 358 NCINNLQFLASNVDSRDSSASDKPACAKNTWASSNKDSPISWFKIVNQLF 407
>ZFIN|ZDB-GENE-070912-20 [details] [associations]
symbol:atad5a "ATPase family, AAA domain containing
5a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
ZFIN:ZDB-GENE-070912-20 GO:GO:0005524 GO:GO:0017111
GeneTree:ENSGT00670000098003 EMBL:FP016144 IPI:IPI00773299
Ensembl:ENSDART00000103733 Ensembl:ENSDART00000103737
Uniprot:E7FE92
Length = 1778
Score = 136 (52.9 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 47/197 (23%), Positives = 91/197 (46%)
Query: 210 FVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLT 269
+++ + LE E E H G + +V +K + DE A K K + T
Sbjct: 869 YILQASAADLEDESKESC---HAGS-SDAVGRKRKRV--DEGEATGKIGKKTKSSH---T 919
Query: 270 EDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVA 329
+D + +I S P + A S + + SL +K Q E+K +P+ +
Sbjct: 920 DDDVI-VIEVSPPSRGEAAQPSGRG--RRGRSLRQK--QKEESKPEDQT-SPVNDDVMIV 973
Query: 330 SPAKRKGQNIQ---QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKR 386
PA + + + + + WTEKY+P+ +EI+GN + V++LH+WL W + ++
Sbjct: 974 EPAVSRNTSTEDGIKEDVLWTEKYQPQHSSEIIGNMESVRRLHSWLKEWKLRADREERRK 1033
Query: 387 NGKKQNDASAEKAAILS 403
+K+++ + + ++S
Sbjct: 1034 QQEKKHEEDSNDSWLMS 1050
Score = 78 (32.5 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 24/124 (19%), Positives = 51/124 (41%)
Query: 2 PQDIRKWFLKPHSKDKDNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQK 61
P +++ L+ K+ + T +++LE C + M RK+ K K +
Sbjct: 401 PSQLQEQVLEAAEKEPEEKTTEKKPEVTSLEKNEEAKSCSVDKKMKVRKSGKKAQAKKAE 460
Query: 62 PEDGGEKEELPAKRKAEKDDGKSVRSS---PLKKFHKAXXXXXXFVPPSVKKNSVGATPS 118
+ + EE PA+ + EK+ + + + P+++ ++ + + A P
Sbjct: 461 DKQDMKPEEPPAEMEVEKESSPAEKDNTEEPVRELRRSTR--------DLSRRQTAAAPQ 512
Query: 119 KKLK 122
KK K
Sbjct: 513 KKEK 516
Score = 77 (32.2 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434
+++G G+GKT A Q LGF+ EVN+S R
Sbjct: 1065 LITGPTGVGKTAAVYACAQELGFKVFEVNSSSQR 1098
Score = 65 (27.9 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 35/152 (23%), Positives = 64/152 (42%)
Query: 467 DRSKHPKTVLIM-DEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYC 525
D++K T LI+ +EVD + D G +A + +D +
Sbjct: 1237 DQAKRTATSLILFEEVDIVFDDDLGFLAAIKTFMTTTKRPVILTTSDSTFGAMFD--GQF 1294
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV 585
++ F+ P +++ + + AE L + + L + DIR ++ QLQ+ + S V
Sbjct: 1295 EEIHFKSPSVADVSSYVRLLCLAENLRTDSKDVSCLLEWNGCDIRQSLLQLQFWACSGGV 1354
Query: 586 IKYDDIRQRLLSS-AKDE-----DISPFTAVD 611
I++ L SS +K + D+ P A D
Sbjct: 1355 ---QQIQRPLPSSESKGKPKSGTDLQPVKAED 1383
Score = 60 (26.2 bits), Expect = 1.0e-10, Sum P(4) = 1.0e-10
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 14 SKDKDNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQKP---EDGGEKEE 70
SK+ + A +P T +++ +N +S +K T +QKP +DGG K+
Sbjct: 133 SKESETAGLPDRTC-PDMKESNLRKNATEDDS-STLTVNKSVETSEQKPLLKKDGGNKKS 190
Query: 71 -LPAKRKAEKD 80
L RKA+ D
Sbjct: 191 ALRRNRKAKGD 201
Score = 59 (25.8 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESK--KSVEKVAASLPKKSPQNIEAK 313
+ST++KE + ++ + ASK +Q K K + + L K + QN +K
Sbjct: 627 RSTRSKESSINYCEDEDSIVFLEASKSNPVSSQESEKINKKLRSLNEVLGKNASQNKTSK 686
Query: 314 STSAPK-APIERMKTVASPA 332
+ + K AP+ K P+
Sbjct: 687 TPAGSKLAPLFVEKKAQRPS 706
Score = 51 (23.0 bits), Expect = 8.0e-10, Sum P(4) = 8.0e-10
Identities = 17/79 (21%), Positives = 39/79 (49%)
Query: 4 DIRKWFLKPHSKDKDNATIPANTALSNLETTNSEPGC---GGHESMGRRKTSKYFATDKQ 60
D+++ L+ ++ + D++T+ N ++ET+ +P GG++ R+ K ++
Sbjct: 148 DMKESNLRKNATEDDSSTLTVN---KSVETSEQKPLLKKDGGNKKSALRRNRKAKGDCEE 204
Query: 61 KPEDGGEKEELPAKRKAEK 79
E G+ +E K E+
Sbjct: 205 SKECVGDAQEPVCGAKPEQ 223
>POMBASE|SPBC902.02c [details] [associations]
symbol:ctf18 "RFC-like complex subunit Ctf18"
species:4896 "Schizosaccharomyces pombe" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005657
"replication fork" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=IC] [GO:0045132 "meiotic
chromosome segregation" evidence=IMP] [GO:0051455 "attachment of
spindle microtubules to kinetochore involved in homologous
chromosome segregation" evidence=IMP] [GO:0003689 "DNA clamp loader
activity" evidence=TAS] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 PomBase:SPBC902.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0017111
eggNOG:COG0470 GO:GO:0005657 GO:GO:0051455 KO:K11269 EMBL:AB027926
PIR:T50383 RefSeq:NP_595200.1 ProteinModelPortal:Q9USQ1
STRING:Q9USQ1 EnsemblFungi:SPBC902.02c.1 GeneID:2541270
KEGG:spo:SPBC902.02c OrthoDB:EOG4HDX3F NextBio:20802382
GO:GO:0031390 GO:GO:0007062 Uniprot:Q9USQ1
Length = 960
Score = 203 (76.5 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 69/289 (23%), Positives = 123/289 (42%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN------EKFLDTGTKR------NG 388
QS W + YRP+ +++G++++ + W+ W+ + + + R N
Sbjct: 348 QSQKLWVDTYRPQLFRDLLGDERVHRAAMHWIKAWDPCVFGKSRLQPSKSMRFNPRFTNI 407
Query: 389 KKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK--ADAKISKGIG 446
+D ++ +L+G G GKTT A ++ G++ +E+NASD R K+S I
Sbjct: 408 TSDSDRPDKRIMMLTGLAGAGKTTLAHVIAHQAGYKVLEINASDDRTAHTVHEKVSSAIS 467
Query: 447 GSNA-NSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXX 505
+A +S V + + D + + +++ + + + G +
Sbjct: 468 NHSALSSQPTCVIVDEIDGG-DPAFVRALLSLLESDEKATEYSQAGNSKKKKKFKKLCRP 526
Query: 506 XXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV 565
ND Y+ L+ L Y + FR P + + RL I E + V+ +L L D
Sbjct: 527 IICICNDLYTPALRPLRPYAQIIYFRPPPQASLVGRLRTICRNENIAVDSRSLTLLTDIY 586
Query: 566 NGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
N DIR IN LQ +SL+ I + I+ L K S + + LF
Sbjct: 587 NSDIRSCINSLQLLSLNNKRIDSETIK---LLQPKSNSFSTSSLIQSLF 632
>TIGR_CMR|CHY_1100 [details] [associations]
symbol:CHY_1100 "DNA ligase, NAD-dependent" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003911 "DNA ligase
(NAD+) activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004149 InterPro:IPR004150
InterPro:IPR013839 InterPro:IPR013840 InterPro:IPR018239
Pfam:PF01653 Pfam:PF03119 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006260 GO:GO:0006281
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 KO:K01972 GO:GO:0003911 PANTHER:PTHR11107:SF5
TIGRFAMs:TIGR00575 HOGENOM:HOG000218458 OMA:ENVRTIR
RefSeq:YP_359946.1 ProteinModelPortal:Q3AD38 SMR:Q3AD38
STRING:Q3AD38 GeneID:3728712 KEGG:chy:CHY_1100 PATRIC:21275338
BioCyc:CHYD246194:GJCN-1099-MONOMER Uniprot:Q3AD38
Length = 664
Score = 195 (73.7 bits), Expect = 8.8e-12, P = 8.8e-12
Identities = 44/83 (53%), Positives = 57/83 (68%)
Query: 195 KEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAG 254
K + E + L GLTFV++GTL S R+EAE LI GG+V+ SVSKKT+Y++ ED G
Sbjct: 581 KYLAEVRDNRLEGLTFVLTGTLSSFTRKEAEQLILSLGGKVSSSVSKKTSYVVVGED-PG 639
Query: 255 AKSTKAKELGTPFLTEDGLFDMI 277
+K TKAKELG P LTE+ M+
Sbjct: 640 SKLTKAKELGIPILTEEEFRQMV 662
>DICTYBASE|DDB_G0272758 [details] [associations]
symbol:chtf18 "chromosome transmission fidelity
protein 18 homolog" species:44689 "Dictyostelium discoideum"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 dictyBase:DDB_G0272758 GO:GO:0005524
EMBL:AAFI02000008 GO:GO:0017111 eggNOG:COG0470 KO:K11269
RefSeq:XP_001134625.1 ProteinModelPortal:Q86L47
EnsemblProtists:DDB0232234 GeneID:8618623 KEGG:ddi:DDB_G0272758
InParanoid:Q86L47 OMA:QPEGESM ProtClustDB:CLSZ2497422
Uniprot:Q86L47
Length = 937
Score = 118 (46.6 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 511 NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570
ND+Y L+ L F+ P+K ++ RL I + EGL + L L D DIR
Sbjct: 443 NDQYVPSLRKLRQKAMVFDFQAPKKNDLLSRLKVICSNEGLSATDATLNALIDMTGSDIR 502
Query: 571 MAINQLQYMSLSLSVIKYDDIRQR 594
IN LQ++ +V+ + ++ +
Sbjct: 503 ACINSLQFIKSKTTVLNSELLKNK 526
Score = 110 (43.8 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 34/103 (33%), Positives = 54/103 (52%)
Query: 391 QNDASA-EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSN 449
Q D + K +L+G PG+GKTT A ++ + + +E+NAS+ R +A SK + +
Sbjct: 271 QEDGTPIAKIILLTGGPGLGKTTLAHVLAKQANYNPVEINASEDRS-GEAFESKLL---S 326
Query: 450 ANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGI 492
A +K L ++ P LI+DE+DG+S D G I
Sbjct: 327 AIEMKSLFNDNK----------PNC-LIIDEIDGISGRDNGPI 358
Score = 67 (28.6 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 18/84 (21%), Positives = 39/84 (46%)
Query: 308 QNIEAKSTSAPKAPIERMKTVASPAKRKG--QNI--QQSSLTWTEKYRPKTPNEIVGNQQ 363
+NIE+ K+ + + +P K KG + I + + W +KY P + ++++ +
Sbjct: 125 ENIESLKL---KSELIKNSNSLTPTKSKGVSEEIVKNKDNRLWVDKYAPTSFHDLLSDTT 181
Query: 364 LVKQLHTWLAHWNEKFLDTGTKRN 387
+ ++ WL W+ D +N
Sbjct: 182 MNLEVLNWLELWDHIVFDKPLSKN 205
>UNIPROTKB|G4NIT3 [details] [associations]
symbol:MGG_04123 "Chromosome transmission fidelity protein
18" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0017111 EMBL:CM001236 KO:K11269 RefSeq:XP_003719706.1
EnsemblFungi:MGG_04123T0 GeneID:2677613 KEGG:mgr:MGG_04123
Uniprot:G4NIT3
Length = 1028
Score = 202 (76.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 64/232 (27%), Positives = 113/232 (48%)
Query: 278 RASKPMKALA-QAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVAS--PAKR 334
RA K +A + +VE+ K+S N+ A + P+ P + + +V S P
Sbjct: 175 RAKKSYYGIAIHSLIDAAVEEEKQLRAKQSAANVPA---AEPR-PDQAVPSVESHAPESN 230
Query: 335 KGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN---------EKFLDTGTK 385
G+ + +L WTEKYR K ++VG+ +Q+ WL W+ K ++
Sbjct: 231 AGRK-PKKTLLWTEKYRAKNFMDLVGDDLTNRQVLRWLKKWDPLVFPHTAKSKAAARASR 289
Query: 386 RN-GKKQ----NDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK--AD 438
R G +Q +D K +L+G PG+GKTT A + + G++ +E+NASD R +
Sbjct: 290 RGAGHQQQQTEDDKPHRKILMLTGPPGLGKTTLAHVCAKQAGYEVLEINASDDRSRDVVR 349
Query: 439 AKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG 490
+I +G N ++++ ++++ + P V++ DEVDG+ +G G
Sbjct: 350 GRIRTSLGTENVKTVEQ---HKSVDGKPPKVARPVCVVV-DEVDGVVSGSGG 397
Score = 43 (20.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 511 NDRYSQKLKSL--VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELAD 563
ND Y L+ L + KP + + RL I + EG+ + A +L +
Sbjct: 448 NDVYHVSLRPLRQSGLAEIVHVGKPTIEAVVTRLKSIFDKEGIPCEKDAARKLCE 502
>SGD|S000005454 [details] [associations]
symbol:RFC4 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IPI] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;IDA] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI] [GO:0007049
"cell cycle" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0031389 "Rad17
RFC-like complex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 SGD:S000005454 GO:GO:0005524 GO:GO:0005634
EMBL:BK006948 GO:GO:0003677 GO:GO:0006298 EMBL:X83121 GO:GO:0017111
KO:K10755 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 EMBL:U26030 PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 Pfam:PF08542 OrthoDB:EOG4PP1RM EMBL:L20502
EMBL:Z74836 PIR:A53845 RefSeq:NP_014547.1 ProteinModelPortal:P40339
SMR:P40339 DIP:DIP-2530N IntAct:P40339 MINT:MINT-540691
STRING:P40339 PaxDb:P40339 PeptideAtlas:P40339 EnsemblFungi:YOL094C
GeneID:854059 KEGG:sce:YOL094C CYGD:YOL094c OMA:TMELYSN
EvolutionaryTrace:P40339 NextBio:975656 Genevestigator:P40339
GermOnline:YOL094C Uniprot:P40339
Length = 323
Score = 157 (60.3 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 49/191 (25%), Positives = 89/191 (46%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
I+SG PG+GKTT+ C L + + + +D + +A +GI N IK +
Sbjct: 46 IISGMPGIGKTTSVH--C--LAHELLGRSYADGVLELNASDDRGIDVVR-NQIKHFAQKK 100
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKS 520
++ KH ++I+DE D M+AG + + ++ ++ ++
Sbjct: 101 L---HLPPGKHK--IVILDEADSMTAGAQQALR--RTMELYSNSTRFAFACNQSNKIIEP 153
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
L + C+ LR+ K +++ KRL+QI E ++ LE + GD+R AIN LQ
Sbjct: 154 LQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV 213
Query: 581 LSLSVIKYDDI 591
++ D++
Sbjct: 214 AGHGLVNADNV 224
Score = 73 (30.8 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQL 368
L W EKYRP+ ++IVGN++ + +L
Sbjct: 9 LPWVEKYRPQVLSDIVGNKETIDRL 33
>CGD|CAL0000922 [details] [associations]
symbol:RFC4 species:5476 "Candida albicans" [GO:0003689 "DNA
clamp loader activity" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 CGD:CAL0000922
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000032 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
HOGENOM:HOG000224155 Pfam:PF08542 RefSeq:XP_719417.1
ProteinModelPortal:Q5ACI4 SMR:Q5ACI4 STRING:Q5ACI4 GeneID:3638994
KEGG:cal:CaO19.7658 Uniprot:Q5ACI4
Length = 323
Score = 151 (58.2 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 59/217 (27%), Positives = 100/217 (46%)
Query: 401 ILSGSPGMGKTTAAK-LVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSN 459
I+SG PG+GKTT+ L ++LG + + + + +A +GI N IK+
Sbjct: 46 IISGLPGIGKTTSIHCLAYELLG----DEHYHQATMELNASDDRGIDVVR-NKIKQFAQT 100
Query: 460 EALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKLK 519
+ +S R K ++I+DE D M+ G + + ++ S+ ++
Sbjct: 101 K-ISLPPGRQK----IIILDEADSMTPGAQQALR--RTIEIYSNTTRFAFACNQSSKIIE 153
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L + C+ LR+ + +E+ RL++I E ++ N L+ L GD+R AIN LQ
Sbjct: 154 PLQSRCAILRYNRLSDEEVLARLLEIIKMEDVKYNTEGLQALIFTAEGDMRQAINNLQST 213
Query: 580 SLS------LSVIKYDD------IRQRLLSSAKDEDI 604
++V K D I+ LLS KD+DI
Sbjct: 214 VAGFGFVNDVNVFKIVDQPHPLVIQSILLSCLKDKDI 250
Score = 79 (32.9 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQL 368
L W EKYRPK +IVGN++ V++L
Sbjct: 9 LPWVEKYRPKKLEDIVGNEETVERL 33
>ZFIN|ZDB-GENE-050306-29 [details] [associations]
symbol:rfc2 "replication factor C (activator 1) 2"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-050306-29 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 SUPFAM:SSF48019 GeneTree:ENSGT00550000075050
Pfam:PF08542 EMBL:CR450711 IPI:IPI00505688
Ensembl:ENSDART00000122513 Bgee:F1R0T0 Uniprot:F1R0T0
Length = 384
Score = 147 (56.8 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 47/192 (24%), Positives = 87/192 (45%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
I++G PG GKTT+ + + L A++ D+ + +A +GI N IK +
Sbjct: 103 IIAGPPGTGKTTSILCLARALLGPAMK----DAVLELNASNDRGIDVVR-NKIKMFAQQK 157
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIA-DLXXXXXXXXXXXXXXXNDRYSQKLK 519
+ + +H ++I+DE D M+ G + + + +D+ + ++
Sbjct: 158 V---TLPKGRHK--IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQ 212
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
S C+ LR+ K R ++I RL ++ E L V LE + GD+R A+N LQ
Sbjct: 213 SR---CAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQST 269
Query: 580 SLSLSVIKYDDI 591
+ I +++
Sbjct: 270 NSGFGYINSENV 281
Score = 85 (35.0 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN-EKFLDTGTKRNGK 389
L W EKYRP NEIVGN++ V +L + N + G GK
Sbjct: 66 LPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGK 112
>TAIR|locus:2204705 [details] [associations]
symbol:AT1G77620 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=ISM]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR004582 SMART:SM00382 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0006281
GO:GO:0007049 GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470
PANTHER:PTHR12172 UniGene:At.17804 IPI:IPI00527278 PIR:G96805
RefSeq:NP_177885.1 UniGene:At.50043 ProteinModelPortal:Q9CAP6
SMR:Q9CAP6 PaxDb:Q9CAP6 PRIDE:Q9CAP6 EnsemblPlants:AT1G77620.1
GeneID:844097 KEGG:ath:AT1G77620 TAIR:At1g77620
HOGENOM:HOG000152243 InParanoid:Q9CAP6 OMA:QLMDECS PhylomeDB:Q9CAP6
ProtClustDB:CLSN2912865 Genevestigator:Q9CAP6 Uniprot:Q9CAP6
Length = 1151
Score = 140 (54.3 bits), Expect = 4.2e-10, Sum P(3) = 4.2e-10
Identities = 52/222 (23%), Positives = 100/222 (45%)
Query: 373 AHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432
A +N D+ ++++G + S + ++ G G GK+ A + GF+ +E N S+
Sbjct: 364 ADYNCSESDSDSEKSGAED---SQKNVLLIVGPAGSGKSAAIHACAKEQGFKILESNTSE 420
Query: 433 SR---------GKA--DAKISKGIGG-----SNANSIKELVSNEALSANMDRSKHPKTVL 476
R G+A +S+ + ++ N ++++V + + + K ++
Sbjct: 421 CRSGTVVRQKFGEALKSYSLSRSLDPLFNSCTDGNGVEDVVEVMPVLHIQNDGANLKPLI 480
Query: 477 IMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQ 536
+ ++VD A DRG ++ + ND+ +L ++ F P K+
Sbjct: 481 LFEDVDICFAEDRGLVSAIQQIAVKAKGPVVLTANDKNHGLPDNLERI--EIYFSLPSKE 538
Query: 537 EIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
E+ L + AE ++VN +LEE+ GDIR AI QLQ+
Sbjct: 539 ELFNHLSLVCAAEEVKVNHGSLEEMTTFCGGDIRKAIMQLQF 580
Score = 94 (38.1 bits), Expect = 4.2e-10, Sum P(3) = 4.2e-10
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK 378
Q + W +KY+P++ +E+ GN + VK ++ WL W E+
Sbjct: 307 QPCNRLWVDKYQPRSASEVCGNTESVKVMNEWLRQWYER 345
Score = 47 (21.6 bits), Expect = 4.2e-10, Sum P(3) = 4.2e-10
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 34 TNSEPGC--GGHESMGRRKTSKYFATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLK 91
+N +P C GG GR + K ++ P++G A +K K GKS R + K
Sbjct: 29 SNGDPMCDEGGEVGDGRSQGKKTRKQKERTPKNG-------ATKKVAK--GKSPRKTTPK 79
Query: 92 K 92
K
Sbjct: 80 K 80
>UNIPROTKB|P63973 [details] [associations]
symbol:ligA "DNA ligase" species:1773 "Mycobacterium
tuberculosis" [GO:0000287 "magnesium ion binding" evidence=IDA]
[GO:0003911 "DNA ligase (NAD+) activity" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0006266 "DNA
ligation" evidence=IDA;IMP] [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_01588 InterPro:IPR001679 InterPro:IPR003583
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119
Pfam:PF03120 PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00278 SMART:SM00532 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005829 GO:GO:0005886 GO:GO:0040007 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0000287 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
EMBL:BX842581 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994
SUPFAM:SSF47781 eggNOG:COG0272 HOGENOM:HOG000218459 KO:K01972
GO:GO:0003911 TIGRFAMs:TIGR00575 OMA:ENVRTIR ProtClustDB:PRK07956
PIR:A70857 RefSeq:NP_217530.1 RefSeq:NP_337609.2
RefSeq:YP_006516472.1 PDB:1ZAU PDB:3SGI PDBsum:1ZAU PDBsum:3SGI
ProteinModelPortal:P63973 SMR:P63973 PRIDE:P63973
EnsemblBacteria:EBMYCT00000001007 EnsemblBacteria:EBMYCT00000069264
GeneID:13317815 GeneID:887354 GeneID:923055 KEGG:mtc:MT3094
KEGG:mtu:Rv3014c KEGG:mtv:RVBD_3014c PATRIC:18128568
TubercuList:Rv3014c BindingDB:P63973 EvolutionaryTrace:P63973
PANTHER:PTHR11107:SF8 Uniprot:P63973
Length = 691
Score = 179 (68.1 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 40/87 (45%), Positives = 52/87 (59%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
E E P L GLT V++G+L R++A++ I GG+ GSVSKKTNY++ D G+
Sbjct: 603 ERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAG-DSPGS 661
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKP 282
K KA ELG P L EDG F + A P
Sbjct: 662 KYDKAVELGVPILDEDG-FRRLLADGP 687
>UNIPROTKB|Q05B83 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 EMBL:BC122635 IPI:IPI00704020
RefSeq:NP_001074372.1 UniGene:Bt.35362 ProteinModelPortal:Q05B83
SMR:Q05B83 STRING:Q05B83 PRIDE:Q05B83 Ensembl:ENSBTAT00000024740
GeneID:508652 KEGG:bta:508652 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 InParanoid:Q05B83
OMA:IQCLARI OrthoDB:EOG48WC2D NextBio:20868620 ArrayExpress:Q05B83
Pfam:PF08542 Uniprot:Q05B83
Length = 352
Score = 131 (51.2 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 43/178 (24%), Positives = 81/178 (45%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
I++G PG GKTT+ + + L A++ D+ + +A +GI N IK +
Sbjct: 71 IIAGPPGTGKTTSILCLARALLGPALK----DAVLELNASNDRGIDVVR-NKIKMFAQQK 125
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIA-DLXXXXXXXXXXXXXXXNDRYSQKLK 519
+ + +H ++I+DE D M+ G + + + +D+ + ++
Sbjct: 126 V---TLPKGRHK--IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQ 180
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
S C+ LR+ K +I RL+ + E ++ + LE + GD+R A+N LQ
Sbjct: 181 SR---CAVLRYTKLTDMQILARLLSVIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQ 235
Score = 89 (36.4 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 24/81 (29%), Positives = 33/81 (40%)
Query: 310 IEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLH 369
+EA+ + P+K G + L W EKYRP NEIVGN+ V +L
Sbjct: 1 MEAQDSGGGTGECGAQDAAPGPSKAPG-SAGHYELPWVEKYRPVKLNEIVGNEDTVSRLE 59
Query: 370 TWLAHWN-EKFLDTGTKRNGK 389
+ N + G GK
Sbjct: 60 VFAREGNVPNIIIAGPPGTGK 80
>UNIPROTKB|P35250 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=TAS] [GO:0032201 "telomere maintenance via
semi-conservative replication" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0003677 GO:GO:0017111 GO:GO:0000084 KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722 EMBL:CH471200
Orphanet:904 Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271
GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663
EMBL:AF045555 EMBL:AC005081 CTD:5982 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI Pfam:PF08542 EMBL:M87338
EMBL:AF483622 EMBL:AB451243 EMBL:BC002813 IPI:IPI00017412
IPI:IPI00218280 PIR:A42700 RefSeq:NP_002905.2 RefSeq:NP_852136.1
UniGene:Hs.647062 ProteinModelPortal:P35250 SMR:P35250
DIP:DIP-34367N IntAct:P35250 STRING:P35250 PhosphoSite:P35250
DMDM:2507300 PaxDb:P35250 PeptideAtlas:P35250 PRIDE:P35250
DNASU:5982 Ensembl:ENST00000055077 Ensembl:ENST00000352131
Ensembl:ENST00000573234 Ensembl:ENST00000576908 GeneID:5982
KEGG:hsa:5982 UCSC:uc003uaj.3 GeneCards:GC07M073645 HGNC:HGNC:9970
HPA:HPA029493 MIM:194050 MIM:600404 neXtProt:NX_P35250
PharmGKB:PA34339 InParanoid:P35250 PhylomeDB:P35250 ChiTaRS:RFC2
GenomeRNAi:5982 NextBio:23285 ArrayExpress:P35250 Bgee:P35250
CleanEx:HS_RFC2 Genevestigator:P35250 GermOnline:ENSG00000049541
Uniprot:P35250
Length = 354
Score = 132 (51.5 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 44/178 (24%), Positives = 80/178 (44%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
I++G PG GKTT+ + + L A++ D+ + +A +GI N IK +
Sbjct: 73 IIAGPPGTGKTTSILCLARALLGPALK----DAMLELNASNDRGIDVVR-NKIKMFAQQK 127
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIA-DLXXXXXXXXXXXXXXXNDRYSQKLK 519
+ + +H ++I+DE D M+ G + + + +D+ + ++
Sbjct: 128 V---TLPKGRHK--IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQ 182
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
S C+ LR+ K +I RLM + E + + LE + GD+R A+N LQ
Sbjct: 183 SR---CAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQ 237
Score = 88 (36.0 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 24/82 (29%), Positives = 35/82 (42%)
Query: 310 IEAKSTSAPKAPIERMKTVASPAKRKGQ-NIQQSSLTWTEKYRPKTPNEIVGNQQLVKQL 368
+E ++ +E + +PA K + L W EKYRP NEIVGN+ V +L
Sbjct: 1 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL 60
Query: 369 HTWLAHWN-EKFLDTGTKRNGK 389
+ N + G GK
Sbjct: 61 EVFAREGNVPNIIIAGPPGTGK 82
>CGD|CAL0003295 [details] [associations]
symbol:CTF18 species:5476 "Candida albicans" [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051455 "attachment of
spindle microtubules to kinetochore involved in homologous
chromosome segregation" evidence=IEA] [GO:0006270 "DNA replication
initiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0007064 "mitotic
sister chromatid cohesion" evidence=IEA] [GO:0035753 "maintenance
of DNA trinucleotide repeats" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 CGD:CAL0003295
GO:GO:0005524 GO:GO:0017111 eggNOG:COG0470 EMBL:AACQ01000049
EMBL:AACQ01000048 KO:K11269 RefSeq:XP_717864.1 RefSeq:XP_717930.1
ProteinModelPortal:Q5A889 STRING:Q5A889 GeneID:3640431
GeneID:3640503 KEGG:cal:CaO19.10749 KEGG:cal:CaO19.3239
Uniprot:Q5A889
Length = 853
Score = 153 (58.9 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 59/228 (25%), Positives = 101/228 (44%)
Query: 275 DMIRASKPMKALAQAESK------KSVEKVAASLPKKSPQNIEAKSTSAP-KAPI----- 322
D ASKP K + K +S E+V ++ +K I S KA +
Sbjct: 103 DFSPASKPSKTVKLFSGKQIKLAPRSTERV--NIDEKQLSGIFLDMDSLTNKANLRNSFK 160
Query: 323 ERMKTVASPAKRKG-QNIQQSSLTWTEKYRPKTPNEI--VGNQQLVKQLHTWLAHWNEK- 378
E K ++ P ++ SS WTEKY+P + ++ GN + + + WL W+
Sbjct: 161 ENRKKLSDPPSLSSIKHDSTSSQIWTEKYKPNSFIQLCSAGNDRQYRLILQWLKKWSPVV 220
Query: 379 FLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKAD 438
F D +K ++ G G+GKTT + ++ + +G+ E+NA++S
Sbjct: 221 FGDDILNTENSDLLGRPYKKILLIHGPTGIGKTTISHILAKHMGYTVQELNAANSMDTLP 280
Query: 439 AKISKGIGG-SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS 485
G +NA S +L AL++N S+ + LI+DE+D ++
Sbjct: 281 QASGGGSTAYTNAASALKLKIVNALTSNSIHSQGKPSCLIIDEIDSLA 328
Score = 76 (31.8 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAK- 600
LMQI E + ++ + ++ + GDIR IN +Q+ S ++ D I +R+
Sbjct: 435 LMQINKQENMGLDHQEIGDIVEICEGDIRACINHMQFNS---RIV--DTIERRISKDTHL 489
Query: 601 -DEDISPFTAVDKLF 614
D +S F D+LF
Sbjct: 490 IDRQLSWFAMTDQLF 504
Score = 59 (25.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 34/173 (19%), Positives = 80/173 (46%)
Query: 526 SDLRFRKPRKQEI---AKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
SD+R + P Q + AK L +++ L+ N+ + + +R++ +R+A+ + S
Sbjct: 598 SDIRVQ-PGNQTLIPNAKNL-DFEHSQLLKSNKNIIRSIENRLSVQMRVALGMNAENAAS 655
Query: 583 LSVIKYDDIRQRLLSSA--KDEDISPFTAVDKLFGFNGG---KLRMDERIDLSMS----D 633
L + I +S+ D +++ ++++ G L + ++ +S +
Sbjct: 656 LVLPCLAKILSPHMSAKVKSDLNVTEKKCLERIAGLVKELDLSLEYSKDLETGLSSLKLN 715
Query: 634 PDLVPLLIQENYINYRPSSA--GRDEVKRLSLIARAAESISDGDIFNVQIRRN 684
PDL L I +NY+ P+++ + +++R SL + D+ ++R+
Sbjct: 716 PDLDSLTIYDNYLTTIPAASVVKQTQLRRQSLFPLITAELDRIDVSKKSVKRS 768
>RGD|621198 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:621198
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 OMA:IQCLARI
OrthoDB:EOG48WC2D Pfam:PF08542 HSSP:P40339 EMBL:BC082110
IPI:IPI00194781 RefSeq:NP_446238.1 UniGene:Rn.113319
ProteinModelPortal:Q641W4 SMR:Q641W4 STRING:Q641W4 PRIDE:Q641W4
Ensembl:ENSRNOT00000001989 GeneID:116468 KEGG:rno:116468
UCSC:RGD:621198 InParanoid:Q641W4 NextBio:619010
Genevestigator:Q641W4 Uniprot:Q641W4
Length = 349
Score = 130 (50.8 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 43/178 (24%), Positives = 80/178 (44%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
I++G PG GKTT+ + + L A++ D+ + +A +GI N IK +
Sbjct: 68 IIAGPPGTGKTTSILCLARALLGPALK----DAVLELNASNDRGIDVVR-NKIKMFAQQK 122
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIA-DLXXXXXXXXXXXXXXXNDRYSQKLK 519
+ + +H ++I+DE D M+ G + + + +D+ + ++
Sbjct: 123 V---TLPKGRHK--IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQ 177
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
S C+ LR+ K ++ RLM + E + + LE + GD+R A+N LQ
Sbjct: 178 SR---CAVLRYTKLTDAQVLSRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQ 232
Score = 83 (34.3 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN-EKFLDTGTKRNGK 389
L W EKYRP NEIVGN+ V +L + N + G GK
Sbjct: 31 LPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGK 77
>MGI|MGI:1341868 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1341868
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 EMBL:AF289664
SUPFAM:SSF48019 GO:GO:0005663 EMBL:AF139987 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
ChiTaRS:RFC2 EMBL:AK075997 EMBL:BC023028 IPI:IPI00124744
RefSeq:NP_064406.1 UniGene:Mm.332739 ProteinModelPortal:Q9WUK4
SMR:Q9WUK4 STRING:Q9WUK4 PhosphoSite:Q9WUK4 PaxDb:Q9WUK4
PRIDE:Q9WUK4 Ensembl:ENSMUST00000023867 GeneID:19718 KEGG:mmu:19718
InParanoid:Q9WUK4 NextBio:297116 Bgee:Q9WUK4 CleanEx:MM_RFC2
Genevestigator:Q9WUK4 GermOnline:ENSMUSG00000023104 Uniprot:Q9WUK4
Length = 349
Score = 129 (50.5 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 43/178 (24%), Positives = 80/178 (44%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
I++G PG GKTT+ + + L A++ D+ + +A +GI N IK +
Sbjct: 68 IIAGPPGTGKTTSILCLARALLGPALK----DAVLELNASNDRGIDVVR-NKIKMFAQQK 122
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIA-DLXXXXXXXXXXXXXXXNDRYSQKLK 519
+ + +H ++I+DE D M+ G + + + +D+ + ++
Sbjct: 123 V---TLPKGRHK--IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQ 177
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
S C+ LR+ K ++ RLM + E + + LE + GD+R A+N LQ
Sbjct: 178 SR---CAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQ 232
Score = 83 (34.3 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN-EKFLDTGTKRNGK 389
L W EKYRP NEIVGN+ V +L + N + G GK
Sbjct: 31 LPWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGK 77
>FB|FBgn0260985 [details] [associations]
symbol:RfC4 "Replication factor C subunit 4" species:7227
"Drosophila melanogaster" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;NAS] [GO:0000819 "sister chromatid
segregation" evidence=NAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=NAS;TAS] [GO:0006260 "DNA replication"
evidence=ISS;NAS;TAS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;NAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA;NAS]
[GO:0016321 "female meiosis chromosome segregation" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0000076 "DNA replication checkpoint" evidence=IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0000077
GO:GO:0005875 EMBL:AE014296 GO:GO:0022008 GO:GO:0003677
GO:GO:0006281 GO:GO:0046331 GO:GO:0017111 GO:GO:0007076 KO:K10755
eggNOG:COG0470 GO:GO:0016321 GO:GO:0000076 GO:GO:0006271
SUPFAM:SSF48019 EMBL:U15967 GeneTree:ENSGT00550000075050
OMA:IQCLARI Pfam:PF08542 EMBL:AY094829 PIR:S55020
RefSeq:NP_523915.1 UniGene:Dm.839 ProteinModelPortal:P53034
SMR:P53034 DIP:DIP-22077N IntAct:P53034 MINT:MINT-925288
STRING:P53034 PaxDb:P53034 PRIDE:P53034 EnsemblMetazoa:FBtr0073264
GeneID:38492 KEGG:dme:Dmel_CG14999 CTD:5984 FlyBase:FBgn0260985
InParanoid:P53034 OrthoDB:EOG4P8D0Q PhylomeDB:P53034
GenomeRNAi:38492 NextBio:808930 Bgee:P53034 GermOnline:CG14999
Uniprot:P53034
Length = 331
Score = 133 (51.9 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 42/178 (23%), Positives = 82/178 (46%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
I++G PG+GKTT + + ++L + + ++ + +A +GI N IK +
Sbjct: 53 IIAGPPGVGKTTTIQCLARIL----LGDSYKEAVLELNASNERGIDVVR-NKIKMFAQQK 107
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIA-DLXXXXXXXXXXXXXXXNDRYSQKLK 519
+ R +H ++I+DE D M+ G + + + +++ + ++
Sbjct: 108 V---TLPRGRHK--IVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQ 162
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
S C+ LRF K ++ +L+++A E L E LE + GD+R +N LQ
Sbjct: 163 SR---CAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQ 217
Score = 77 (32.2 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN 376
++S L W EKYRP EIVGN+ V +L + N
Sbjct: 12 KRSHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGN 48
>GENEDB_PFALCIPARUM|PFL2005w [details] [associations]
symbol:PFL2005w "replication factor c subunit 4"
species:5833 "Plasmodium falciparum" [GO:0006260 "DNA replication"
evidence=ISS] [GO:0005663 "DNA replication factor C complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 162 (62.1 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 60/239 (25%), Positives = 111/239 (46%)
Query: 361 NQQLVKQLHTWLAHWNEKFLD--TGTKR--NGKKQNDASAEKA-AILSGSPGMGKTTAAK 415
N+ L + + W+ + +FLD G N K S +L+G+PG GKTT+
Sbjct: 8 NRLLKRNIDIWIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSIL 67
Query: 416 -LVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA-NMDRSKHPK 473
L +MLG QA + + +A +GI N I++ + + A ++ KH
Sbjct: 68 CLASEMLGNQAKKAVL-----ELNASDDRGI-----NVIRDRIKSFAKEIISLPPGKHK- 116
Query: 474 TVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKL-KSLVNYCSDLRFRK 532
++I+DEVD M+ + + + S+K+ +L + C+ +R+ K
Sbjct: 117 -IIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQ---SEKIIDALQSRCAIIRYFK 172
Query: 533 PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
++ KR+++I + E ++ + L+ L +GD+R A+N LQ L VI +++
Sbjct: 173 LSDDQVLKRILKICDLENIKYTDDGLDALTFIADGDLRKAVNCLQSTYAGLEVINKENV 231
>UNIPROTKB|Q8I512 [details] [associations]
symbol:PFL2005w "Replication factor C subunit 4"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 162 (62.1 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 60/239 (25%), Positives = 111/239 (46%)
Query: 361 NQQLVKQLHTWLAHWNEKFLD--TGTKR--NGKKQNDASAEKA-AILSGSPGMGKTTAAK 415
N+ L + + W+ + +FLD G N K S +L+G+PG GKTT+
Sbjct: 8 NRLLKRNIDIWIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSIL 67
Query: 416 -LVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA-NMDRSKHPK 473
L +MLG QA + + +A +GI N I++ + + A ++ KH
Sbjct: 68 CLASEMLGNQAKKAVL-----ELNASDDRGI-----NVIRDRIKSFAKEIISLPPGKHK- 116
Query: 474 TVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKL-KSLVNYCSDLRFRK 532
++I+DEVD M+ + + + S+K+ +L + C+ +R+ K
Sbjct: 117 -IIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQ---SEKIIDALQSRCAIIRYFK 172
Query: 533 PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
++ KR+++I + E ++ + L+ L +GD+R A+N LQ L VI +++
Sbjct: 173 LSDDQVLKRILKICDLENIKYTDDGLDALTFIADGDLRKAVNCLQSTYAGLEVINKENV 231
>POMBASE|SPAC1687.03c [details] [associations]
symbol:rfc4 "DNA replication factor C complex subunit
Rfc4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0031389 "Rad17 RFC-like complex"
evidence=TAS] [GO:0031390 "Ctf18 RFC-like complex" evidence=TAS]
[GO:0031391 "Elg1 RFC-like complex" evidence=IDA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748
PomBase:SPAC1687.03c GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0007049 GO:GO:0000790
GO:GO:0043596 GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0031390
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 HOGENOM:HOG000224155 Pfam:PF08542 PIR:T37746
RefSeq:NP_593121.1 ProteinModelPortal:O94449 SMR:O94449
STRING:O94449 EnsemblFungi:SPAC1687.03c.1 GeneID:2542790
KEGG:spo:SPAC1687.03c OMA:GTYELPW OrthoDB:EOG4PP1RM
NextBio:20803834 Uniprot:O94449
Length = 342
Score = 136 (52.9 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 42/191 (21%), Positives = 87/191 (45%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
++SG PG+GKTT+ ++C L + + + +A +GI N IK +
Sbjct: 58 VISGMPGIGKTTS--ILC--LAHALLGPAYKEGVLELNASDERGIDVVR-NRIKAFAQKK 112
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKS 520
+ + +H ++I+DE D M+AG + + ++ ++ ++
Sbjct: 113 VI---LPPGRHK--IIILDEADSMTAGAQQALR--RTMEIYSNTTRFALACNQSNKIIEP 165
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ + C+ LR+ + Q++ +RL+ I AE + + L L GD+R A+N LQ
Sbjct: 166 IQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDGLAALIMTAEGDMRQAVNNLQSTV 225
Query: 581 LSLSVIKYDDI 591
++ +++
Sbjct: 226 AGFGLVNGENV 236
Score = 71 (30.1 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 328 VASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQL 368
V+S + N L W EKYRP ++IVGN++ + +L
Sbjct: 5 VSSSVFGEKNNSVAYELPWVEKYRPIVLDDIVGNEETIDRL 45
>UNIPROTKB|E2QSU1 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
Ensembl:ENSCAFT00000019010 Uniprot:E2QSU1
Length = 316
Score = 121 (47.7 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 41/178 (23%), Positives = 80/178 (44%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
I++G PG GKTT+ + + L A++ D+ + +A +GI N IK +
Sbjct: 71 IIAGPPGTGKTTSILCLARALLGPALK----DAVLELNASNDRGIDVVR-NKIKMFAQQK 125
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIA-DLXXXXXXXXXXXXXXXNDRYSQKLK 519
+ + +H ++I+DE D M+ G + + + +D+ + ++
Sbjct: 126 V---TLPKGRHK--IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQ 180
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
S C+ LR+ K ++ RL+ + E + + LE + GD+R A+N +Q
Sbjct: 181 SR---CAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGLEAVIFTAQGDMRQALNNVQ 235
Score = 84 (34.6 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 22/61 (36%), Positives = 27/61 (44%)
Query: 331 PAKRKGQ-NIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN-EKFLDTGTKRNG 388
PA K + L W EKYRP NEIVGN+ V +L + N + G G
Sbjct: 20 PASSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTG 79
Query: 389 K 389
K
Sbjct: 80 K 80
>UNIPROTKB|P53033 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006302
"double-strand break repair" evidence=TAS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005654 GO:GO:0003677
GO:GO:0006260 GO:GO:0000724 GO:GO:0017111 KO:K10755 eggNOG:COG0470
Reactome:REACT_115612 SUPFAM:SSF48019 GO:GO:0005663 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
EMBL:U12438 IPI:IPI00586061 PIR:I50704 RefSeq:NP_990861.1
UniGene:Gga.883 ProteinModelPortal:P53033 SMR:P53033 STRING:P53033
Ensembl:ENSGALT00000001980 GeneID:396542 KEGG:gga:396542
InParanoid:P53033 NextBio:20816578 Uniprot:P53033
Length = 359
Score = 132 (51.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 44/178 (24%), Positives = 81/178 (45%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
I++G PG GKTT+ + + L A++ D+ + +A +GI N IK +
Sbjct: 78 IIAGPPGTGKTTSILCLARALLGPALK----DAVLELNASNDRGIDVVR-NKIKMFAQQK 132
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIA-DLXXXXXXXXXXXXXXXNDRYSQKLK 519
+ + +H ++I+DE D M+ G + + + +D+ + ++
Sbjct: 133 V---TLPKGRHK--IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQ 187
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
S C+ LR+ K +I RL++I E + + LE + GD+R A+N LQ
Sbjct: 188 SR---CAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQ 242
Score = 73 (30.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN-EKFLDTGTKRNGK 389
L W EKYRP E+VGN+ V +L + N + G GK
Sbjct: 41 LPWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGK 87
>WB|WBGene00004338 [details] [associations]
symbol:rfc-2 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260
GO:GO:0040011 GO:GO:0000003 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
OMA:IQCLARI Pfam:PF08542 EMBL:FO080408 PIR:D88638
RefSeq:NP_500069.1 HSSP:Q8U4J3 ProteinModelPortal:O44175 SMR:O44175
DIP:DIP-26649N IntAct:O44175 MINT:MINT-1044481 STRING:O44175
PaxDb:O44175 EnsemblMetazoa:F58F6.4 GeneID:176946
KEGG:cel:CELE_F58F6.4 UCSC:F58F6.4 CTD:176946 WormBase:F58F6.4
InParanoid:O44175 NextBio:894694 Uniprot:O44175
Length = 334
Score = 126 (49.4 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 57/245 (23%), Positives = 105/245 (42%)
Query: 401 ILSGSPGMGKTTAA-KLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSN 459
+LSG PG GKTT+ L ++LG + E + +A +GI + IK
Sbjct: 47 VLSGPPGCGKTTSVWALARELLGDKVKEAVL-----ELNASDERGIDVVR-HRIKTFAQT 100
Query: 460 EALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKL- 518
+ + +H ++I+DE D M+ G + + N S+K+
Sbjct: 101 KV---TLPEGRHK--IIILDEADSMTDGAQQALRR-TMEMYTKTTRFALACNQ--SEKII 152
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ + + C+ LR+ K ++ R+ ++A AE + ++ LE + GD+R A+N LQ
Sbjct: 153 EPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDGGLEAILFTAQGDMRQALNNLQA 212
Query: 579 MSLSLSVIKYDDIRQRLLSSAKDEDISPFT-AVDKLFGFNGGKLRMDERIDLSMSDPDLV 637
+ ++ +++ + D I D+ F F K+ + E L S D+V
Sbjct: 213 TVNAYELVNKENVLKVCDEPHPDLMIKMLHYCTDRKF-FEASKI-IHEFHRLGFSSDDIV 270
Query: 638 PLLIQ 642
L +
Sbjct: 271 STLFR 275
Score = 78 (32.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQL 368
+Q W EKYRPK +IVGN+ +V++L
Sbjct: 6 KQQLAPWVEKYRPKVLADIVGNENIVERL 34
>UNIPROTKB|F6ULR2 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 OMA:IQCLARI
Pfam:PF08542 Ensembl:ENSCAFT00000019010 EMBL:AAEX03004231
EMBL:AAEX03004232 Uniprot:F6ULR2
Length = 364
Score = 121 (47.7 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 41/178 (23%), Positives = 80/178 (44%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
I++G PG GKTT+ + + L A++ D+ + +A +GI N IK +
Sbjct: 83 IIAGPPGTGKTTSILCLARALLGPALK----DAVLELNASNDRGIDVVR-NKIKMFAQQK 137
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIA-DLXXXXXXXXXXXXXXXNDRYSQKLK 519
+ + +H ++I+DE D M+ G + + + +D+ + ++
Sbjct: 138 V---TLPKGRHK--IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQ 192
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
S C+ LR+ K ++ RL+ + E + + LE + GD+R A+N +Q
Sbjct: 193 SR---CAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGLEAVIFTAQGDMRQALNNVQ 247
Score = 84 (34.6 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 22/61 (36%), Positives = 27/61 (44%)
Query: 331 PAKRKGQ-NIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN-EKFLDTGTKRNG 388
PA K + L W EKYRP NEIVGN+ V +L + N + G G
Sbjct: 32 PASSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTG 91
Query: 389 K 389
K
Sbjct: 92 K 92
>TIGR_CMR|CBU_0542 [details] [associations]
symbol:CBU_0542 "DNA ligase, NAD-dependent" species:227377
"Coxiella burnetii RSA 493" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004149 InterPro:IPR004150
InterPro:IPR013839 InterPro:IPR013840 InterPro:IPR018239
Pfam:PF01653 Pfam:PF03119 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 KO:K01972 GO:GO:0003911 PANTHER:PTHR11107:SF5
TIGRFAMs:TIGR00575 HOGENOM:HOG000218458 OMA:ENVRTIR HSSP:P26996
RefSeq:NP_819574.2 ProteinModelPortal:Q83DZ6 PRIDE:Q83DZ6
GeneID:1208427 KEGG:cbu:CBU_0542 PATRIC:17929781
ProtClustDB:CLSK2516812 BioCyc:CBUR227377:GJ7S-545-MONOMER
Uniprot:Q83DZ6
Length = 673
Score = 163 (62.4 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 33/75 (44%), Positives = 50/75 (66%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELG 264
+ G TFV++G L SL REEAE+ I+R GG+ T SVSK T+Y++ E+ G+K KAK LG
Sbjct: 600 IAGKTFVLTGALKSLTREEAEEKIERSGGKATSSVSKNTDYVIVGEN-PGSKYEKAKALG 658
Query: 265 TPFLTEDGLFDMIRA 279
+ E+ ++++
Sbjct: 659 ISLIDEEAFLKLLKS 673
>WB|WBGene00004340 [details] [associations]
symbol:rfc-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0045750 "positive regulation of S
phase of mitotic cell cycle" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006260
GO:GO:0000003 GO:GO:0000910 GO:GO:0017111 GO:GO:0045750 KO:K10755
eggNOG:COG0470 EMBL:FO080392 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 PIR:T16219 RefSeq:NP_498521.1
ProteinModelPortal:P53016 SMR:P53016 DIP:DIP-24293N IntAct:P53016
MINT:MINT-226482 STRING:P53016 PaxDb:P53016 EnsemblMetazoa:F31E3.3
GeneID:175976 KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976
WormBase:F31E3.3 InParanoid:P53016 OMA:CDLENNL NextBio:890574
Uniprot:P53016
Length = 334
Score = 126 (49.4 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 54/199 (27%), Positives = 94/199 (47%)
Query: 404 GSPGMGKTTAAKLVCQMLG----F--QAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
G PG GKT+AA C+ L F + +++NASD RG A + + I + +S+
Sbjct: 55 GPPGTGKTSAALAFCRQLFPKNIFHDRVLDLNASDERGIA--VVRQKIQSFSKSSLGHSH 112
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRY-SQ 516
+ L ++I+DEVD M+ R A + Y S+
Sbjct: 113 REDVLKLK---------IIILDEVDAMT---REAQAAMRRVIEDFSKTTRFILICNYVSR 160
Query: 517 KLKSLVNYCSDLRFRK-PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ +V+ C+ RF+ P + ++ +RL I +AEG +++ L+++ + GD+R A+
Sbjct: 161 LIPPVVSRCAKFRFKSLPAEIQV-QRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCT 219
Query: 576 LQYMSLSLSVIKYDDIRQR 594
LQ SL+ ++K D R
Sbjct: 220 LQ--SLA-PILKSGDDNAR 235
Score = 76 (31.8 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 338 NIQQSSLTWTEKYRPKTPNEIVGNQQLVKQL 368
N + LTWTEKYRPKT ++I ++V L
Sbjct: 9 NKRPKVLTWTEKYRPKTLDDIAYQDEVVTML 39
>UNIPROTKB|P53016 [details] [associations]
symbol:rfc-4 "Replication factor C subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0006260 GO:GO:0000003 GO:GO:0000910
GO:GO:0017111 GO:GO:0045750 KO:K10755 eggNOG:COG0470 EMBL:FO080392
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 PIR:T16219
RefSeq:NP_498521.1 ProteinModelPortal:P53016 SMR:P53016
DIP:DIP-24293N IntAct:P53016 MINT:MINT-226482 STRING:P53016
PaxDb:P53016 EnsemblMetazoa:F31E3.3 GeneID:175976
KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976 WormBase:F31E3.3
InParanoid:P53016 OMA:CDLENNL NextBio:890574 Uniprot:P53016
Length = 334
Score = 126 (49.4 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 54/199 (27%), Positives = 94/199 (47%)
Query: 404 GSPGMGKTTAAKLVCQMLG----F--QAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
G PG GKT+AA C+ L F + +++NASD RG A + + I + +S+
Sbjct: 55 GPPGTGKTSAALAFCRQLFPKNIFHDRVLDLNASDERGIA--VVRQKIQSFSKSSLGHSH 112
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRY-SQ 516
+ L ++I+DEVD M+ R A + Y S+
Sbjct: 113 REDVLKLK---------IIILDEVDAMT---REAQAAMRRVIEDFSKTTRFILICNYVSR 160
Query: 517 KLKSLVNYCSDLRFRK-PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ +V+ C+ RF+ P + ++ +RL I +AEG +++ L+++ + GD+R A+
Sbjct: 161 LIPPVVSRCAKFRFKSLPAEIQV-QRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCT 219
Query: 576 LQYMSLSLSVIKYDDIRQR 594
LQ SL+ ++K D R
Sbjct: 220 LQ--SLA-PILKSGDDNAR 235
Score = 76 (31.8 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 338 NIQQSSLTWTEKYRPKTPNEIVGNQQLVKQL 368
N + LTWTEKYRPKT ++I ++V L
Sbjct: 9 NKRPKVLTWTEKYRPKTLDDIAYQDEVVTML 39
>GENEDB_PFALCIPARUM|PFA0545c [details] [associations]
symbol:PFA0545c "replication factor c protein,
putative" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0006260
GO:GO:0017111 EMBL:AL844501 GO:GO:0005663 RefSeq:XP_001351041.1
ProteinModelPortal:Q8I233 EnsemblProtists:PFA0545c:mRNA
GeneID:813246 KEGG:pfa:PFA_0545c HOGENOM:HOG000283786
ProtClustDB:CLSZ2500531 Uniprot:Q8I233
Length = 1167
Score = 170 (64.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 61/252 (24%), Positives = 109/252 (43%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF-----LDTGTKRNGKK-QNDASA 396
++ + EKYR K +E++ ++ + ++ WL WN+K ++T N ++ D
Sbjct: 325 NINFVEKYRAKYFSELLTDESINLEVLLWLKKWNDKIRNEKNINTYNDMNPEQVTKDNDF 384
Query: 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
E+ +L GS G GKTT A ++ F IE+N SD R K ++
Sbjct: 385 ERVLLLGGSSGKGKTTLAYVIANHFKFNIIEINGSDDRNK--------------ETLIPF 430
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG--GIADLXXXXXXXXXXXXXXX---- 510
+ + + N SK P + I+DE+DG+S+ + I
Sbjct: 431 IES-VVCINSVTSK-PN-LCIIDEIDGLSSTHQNIDSIMKFLNKKDKKNKSIIKRPIICI 487
Query: 511 -NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDI 569
ND Y + LK L + + + R+ I + E +++N A+ +L D DI
Sbjct: 488 CNDIYHKSLKELRKISKVVIVENINIEMLKIRINYICDKENIKINNEAINKLIDICKSDI 547
Query: 570 RMAINQLQYMSL 581
R +N + ++S+
Sbjct: 548 RSILNTIYFLSI 559
Score = 40 (19.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 16/84 (19%), Positives = 36/84 (42%)
Query: 9 FLKPHSKDKDNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQKPEDGGEK 68
+++ DK+N N + +ET E GH + R+ + ++ E+
Sbjct: 161 YIQKRKDDKNNNINHDNVNIC-VETQREEH-TSGHNNFLRKNNKDFRKLLEELLIQIKEE 218
Query: 69 EELPAKRKAEKDDGKSVRSSPLKK 92
+++ ++ K +K+ K LK+
Sbjct: 219 DKIISELKRKKEQEKKNEEEKLKE 242
>UNIPROTKB|Q8I233 [details] [associations]
symbol:PFA_0545c "Replication factor c protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0006260
GO:GO:0017111 EMBL:AL844501 GO:GO:0005663 RefSeq:XP_001351041.1
ProteinModelPortal:Q8I233 EnsemblProtists:PFA0545c:mRNA
GeneID:813246 KEGG:pfa:PFA_0545c HOGENOM:HOG000283786
ProtClustDB:CLSZ2500531 Uniprot:Q8I233
Length = 1167
Score = 170 (64.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 61/252 (24%), Positives = 109/252 (43%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF-----LDTGTKRNGKK-QNDASA 396
++ + EKYR K +E++ ++ + ++ WL WN+K ++T N ++ D
Sbjct: 325 NINFVEKYRAKYFSELLTDESINLEVLLWLKKWNDKIRNEKNINTYNDMNPEQVTKDNDF 384
Query: 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
E+ +L GS G GKTT A ++ F IE+N SD R K ++
Sbjct: 385 ERVLLLGGSSGKGKTTLAYVIANHFKFNIIEINGSDDRNK--------------ETLIPF 430
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG--GIADLXXXXXXXXXXXXXXX---- 510
+ + + N SK P + I+DE+DG+S+ + I
Sbjct: 431 IES-VVCINSVTSK-PN-LCIIDEIDGLSSTHQNIDSIMKFLNKKDKKNKSIIKRPIICI 487
Query: 511 -NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDI 569
ND Y + LK L + + + R+ I + E +++N A+ +L D DI
Sbjct: 488 CNDIYHKSLKELRKISKVVIVENINIEMLKIRINYICDKENIKINNEAINKLIDICKSDI 547
Query: 570 RMAINQLQYMSL 581
R +N + ++S+
Sbjct: 548 RSILNTIYFLSI 559
Score = 40 (19.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 16/84 (19%), Positives = 36/84 (42%)
Query: 9 FLKPHSKDKDNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQKPEDGGEK 68
+++ DK+N N + +ET E GH + R+ + ++ E+
Sbjct: 161 YIQKRKDDKNNNINHDNVNIC-VETQREEH-TSGHNNFLRKNNKDFRKLLEELLIQIKEE 218
Query: 69 EELPAKRKAEKDDGKSVRSSPLKK 92
+++ ++ K +K+ K LK+
Sbjct: 219 DKIISELKRKKEQEKKNEEEKLKE 242
>UNIPROTKB|F1NJA2 [details] [associations]
symbol:F1NJA2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 GeneTree:ENSGT00670000098003
EMBL:AADN02030010 IPI:IPI00599627 Ensembl:ENSGALT00000005217
Uniprot:F1NJA2
Length = 1760
Score = 129 (50.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 33/126 (26%), Positives = 63/126 (50%)
Query: 268 LTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKT 327
L E+ + D KP + + K+ ++ S K+ +N E + S +A R +
Sbjct: 903 LVENSMQDSEANQKPSDNWKETKRKRKEKEDQKS--KRRKENTETELES--RA--SRTED 956
Query: 328 VASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRN 387
+ ++ + WTEKY+P+ +E+VGN++ +++LH+WL W ++ D KRN
Sbjct: 957 TEYLSDTNALSVGVEDVLWTEKYQPQDSSELVGNKKEIERLHSWLKEWKKR-ADWEEKRN 1015
Query: 388 GKKQND 393
K + +
Sbjct: 1016 QKGEKE 1021
Score = 85 (35.0 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 27/84 (32%), Positives = 38/84 (45%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR-GKA------DAKISKGIGGSNANSI 453
+++G PG+GKT A Q LGF+ EVNAS R G+ +A S + N+
Sbjct: 1056 LITGPPGVGKTAAVYACAQELGFKIFEVNASCQRSGRQILSQLKEATQSHQVDKKGINAY 1115
Query: 454 KELVSNEALSANMDRSK-HPKTVL 476
K N S + PK V+
Sbjct: 1116 KPCFFNSCSSTKSPKKMCSPKKVI 1139
Score = 67 (28.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 27/122 (22%), Positives = 47/122 (38%)
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQ 516
+S E +R K ++++ +EVD + D G ++ + ND
Sbjct: 1203 ISKEIEDGEHNR-KSATSLILFEEVDIIFDEDAGFLSAIKTFMATAKRPVILTTNDPTFS 1261
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
+ Y ++ F+ P A L + AE L + L L N DIR ++ L
Sbjct: 1262 LMFD--GYFEEINFQTPSLINAASYLQALCLAENLRTDVKDLATLLATNNCDIRQSVLYL 1319
Query: 577 QY 578
Q+
Sbjct: 1320 QF 1321
>TAIR|locus:2015233 [details] [associations]
symbol:RFC2 "replication factor C 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 EMBL:AC010795 HOGENOM:HOG000224155 Pfam:PF08542
OMA:TMELYSN HSSP:Q8U4J3 EMBL:BT031353 IPI:IPI00535046 PIR:B96657
RefSeq:NP_176504.1 UniGene:At.36170 ProteinModelPortal:Q9CAM7
SMR:Q9CAM7 STRING:Q9CAM7 PaxDb:Q9CAM7 PRIDE:Q9CAM7
EnsemblPlants:AT1G63160.1 GeneID:842620 KEGG:ath:AT1G63160
TAIR:At1g63160 InParanoid:Q9CAM7 PhylomeDB:Q9CAM7
ProtClustDB:PLN03025 Genevestigator:Q9CAM7 Uniprot:Q9CAM7
Length = 333
Score = 129 (50.5 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 47/192 (24%), Positives = 85/192 (44%)
Query: 401 ILSGSPGMGKTTAA-KLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSN 459
ILSG PG GKTT+ L ++LG N ++ + +A +GI N IK
Sbjct: 52 ILSGPPGTGKTTSILALAHELLG-----TNYKEAVLELNASDDRGIDVVR-NKIKMFAQK 105
Query: 460 EALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKLK 519
+ + +H V+I+DE D M++G + + ++ ++
Sbjct: 106 KV---TLPPGRHK--VVILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTS--AKIIE 158
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ + C+ +RF + Q+I RL+ + AE + LE + +GD+R A+N LQ
Sbjct: 159 PIQSRCALVRFSRLSDQQILGRLLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT 218
Query: 580 SLSLSVIKYDDI 591
S + +++
Sbjct: 219 FSGFSFVNQENV 230
Score = 66 (28.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQL 368
W EKYRP +IVGN+ V +L
Sbjct: 17 WVEKYRPSKVVDIVGNEDAVSRL 39
>FB|FBgn0015376 [details] [associations]
symbol:cutlet "cutlet" species:7227 "Drosophila melanogaster"
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0006260 "DNA replication"
evidence=ISS;NAS] [GO:0003677 "DNA binding" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0008283
GO:GO:0017111 eggNOG:COG0470 KO:K11269 GeneTree:ENSGT00550000075029
RefSeq:NP_787969.1 ProteinModelPortal:Q8IQ05 SMR:Q8IQ05
STRING:Q8IQ05 PaxDb:Q8IQ05 EnsemblMetazoa:FBtr0077541 GeneID:44637
KEGG:dme:Dmel_CG33122 UCSC:CG33122-RA CTD:44637 FlyBase:FBgn0015376
InParanoid:Q8IQ05 OMA:KRPNCIV OrthoDB:EOG44F4RB PhylomeDB:Q8IQ05
GenomeRNAi:44637 NextBio:837492 ArrayExpress:Q8IQ05 Bgee:Q8IQ05
Uniprot:Q8IQ05
Length = 993
Score = 143 (55.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 56/232 (24%), Positives = 94/232 (40%)
Query: 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
+K A+L G PG+GKTT A + + G+ E+NASD R K++ L
Sbjct: 420 QKVALLCGPPGLGKTTLAHTIARHAGYNVREINASDDRSPEAFKLA-------------L 466
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG----IADLXXXXXXXXXXXXXXX-- 510
+ +S+ ++ K P + ++DE+DG I+D
Sbjct: 467 ENGTQMSSVLNEDKRPNCI-VLDEIDGAPRQSIDYLVKFISDAVYTKVKAKGAKAEHNVL 525
Query: 511 --------NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELA 562
ND Y L+ L + F +A+RL++IA E L+ + +L LA
Sbjct: 526 KRPIICICNDVYDPALRPLRQVAFVVTFPPIDAARLAERLVKIAFKEQLKTDFGSLIALA 585
Query: 563 DRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
++ D+R I+ +Q+ + + D+ L KD F D +F
Sbjct: 586 EKSGNDVRSCISSMQFFNAQKHSLTLQDVLNNNLGQ-KDRHQGLFAVWDAIF 636
Score = 64 (27.6 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 12/60 (20%), Positives = 29/60 (48%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W +KY+P+ +++ ++ + L WL W++ G + K++ +A + G+
Sbjct: 322 WVDKYKPRKYIDLLSDEMTNRSLLYWLKMWDKVVF--GKAFHSKREQEAVTGEGGTAGGA 379
>UNIPROTKB|F1RG33 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0009360 "DNA
polymerase III complex" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR010372
Pfam:PF00004 Pfam:PF06144 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887
GeneTree:ENSGT00550000075029 GO:GO:0009360 EMBL:FP016225
Ensembl:ENSSSCT00000008778 Uniprot:F1RG33
Length = 978
Score = 156 (60.0 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 64/251 (25%), Positives = 104/251 (41%)
Query: 347 TEKYRPKTPNEIVGNQQLVKQLHTWLAHWN--EKFLDTGTKRNGKKQNDASAEKAAILSG 404
T K RP G + W +H E+ L+ +G+ + +K A+L G
Sbjct: 323 TRKPRPSVEPACGGKEATASS--KWKSHEQVLEEMLEAELDPSGRPR-----QKVALLCG 375
Query: 405 SPGMGKTTAAKLVCQMLGFQAIEVNASDSRG--------KADAKISK--GIGGS-NANSI 453
PG+GKTT A ++ + G+ +E+NASD R +A ++ G GG N I
Sbjct: 376 PPGLGKTTLAHVIARHAGYCVVEMNASDDRSPEAFRTRIEAATQMESVLGSGGRPNCLVI 435
Query: 454 KELVSNEALSAN-----MDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXX 508
E+ + N +DR K P+ + G A GG
Sbjct: 436 DEIDGAPTAAINVLLSVLDR-KGPQ-----EAEPGAPAMAAGGGRRRRAEGGLLMRPIIC 489
Query: 509 XXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGD 568
ND+++ L+ L L F + +RL +I+ G++ + AL L ++ + D
Sbjct: 490 ICNDQFAPSLRQLKPQALLLHFPPTLPSRLTQRLQEISQQRGMQADPGALAALCEKTDND 549
Query: 569 IRMAINQLQYM 579
IR IN LQ++
Sbjct: 550 IRACINALQFL 560
>TIGR_CMR|CJE_0689 [details] [associations]
symbol:CJE_0689 "DNA ligase, NAD-dependent" species:195099
"Campylobacter jejuni RM1221" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03120
PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278
SMART:SM00532 InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 EMBL:CP000025
GenomeReviews:CP000025_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
InterPro:IPR010994 SUPFAM:SSF47781 eggNOG:COG0272 KO:K01972
GO:GO:0003911 PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575
HOGENOM:HOG000218458 OMA:ENVRTIR ProtClustDB:PRK07956
RefSeq:YP_178701.1 HSSP:P26996 ProteinModelPortal:Q5HVI4
STRING:Q5HVI4 GeneID:3231989 KEGG:cjr:CJE0689 PATRIC:20043106
BioCyc:CJEJ195099:GJC0-706-MONOMER Uniprot:Q5HVI4
Length = 647
Score = 153 (58.9 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 35/72 (48%), Positives = 52/72 (72%)
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
G TFVI+GTL S R+E + LI++ GG+V+GSVSKKT+Y+L E+ AG+K +KAKEL
Sbjct: 577 GKTFVITGTL-SRPRDEFKALIEKLGGKVSGSVSKKTDYVLFGEE-AGSKLSKAKELEVK 634
Query: 267 FLTEDGLFDMIR 278
+ E ++++
Sbjct: 635 CIDESAFNELVK 646
>TIGR_CMR|GSU_0890 [details] [associations]
symbol:GSU_0890 "DNA ligase, NAD-dependent" species:243231
"Geobacter sulfurreducens PCA" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004149 InterPro:IPR004150
InterPro:IPR013839 InterPro:IPR013840 InterPro:IPR018239
Pfam:PF01653 Pfam:PF03119 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 HOGENOM:HOG000218459 KO:K01972 GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 HSSP:O87703 OMA:ENVRTIR
RefSeq:NP_951947.1 ProteinModelPortal:Q74ER9 GeneID:2687161
KEGG:gsu:GSU0890 PATRIC:22024545 ProtClustDB:CLSK828084
BioCyc:GSUL243231:GH27-877-MONOMER Uniprot:Q74ER9
Length = 670
Score = 152 (58.6 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
G TFV +G L R EA+ ++++ GG GSVSKKT+Y++ + AG+K KA++LG
Sbjct: 598 GKTFVFTGALTRFSRPEAQKMVEKEGGHAAGSVSKKTDYVVAGAE-AGSKLDKARQLGVR 656
Query: 267 FLTEDGLFDMI 277
LTED M+
Sbjct: 657 VLTEDEFLAML 667
>UNIPROTKB|Q96QE3 [details] [associations]
symbol:ATAD5 "ATPase family AAA domain-containing protein
5" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0006974
GO:GO:0017111 EMBL:AJ314648 EMBL:AY557611 EMBL:AL832103
EMBL:BC015051 EMBL:AK022797 EMBL:AC127024 EMBL:AC130324
IPI:IPI00102575 IPI:IPI00885113 RefSeq:NP_079133.3
UniGene:Hs.528902 HSSP:P38630 ProteinModelPortal:Q96QE3 SMR:Q96QE3
STRING:Q96QE3 PhosphoSite:Q96QE3 DMDM:296439460 PaxDb:Q96QE3
PRIDE:Q96QE3 DNASU:79915 Ensembl:ENST00000321990 GeneID:79915
KEGG:hsa:79915 UCSC:uc002hfs.1 CTD:79915 GeneCards:GC17P029159
HGNC:HGNC:25752 MIM:609534 neXtProt:NX_Q96QE3 PharmGKB:PA162377100
eggNOG:COG0470 HOGENOM:HOG000034121 HOVERGEN:HBG101177
InParanoid:Q96QE3 OMA:LDVYNAV OrthoDB:EOG4NP731 PhylomeDB:Q96QE3
ChEMBL:CHEMBL1741209 GenomeRNAi:79915 NextBio:69790
ArrayExpress:Q96QE3 Bgee:Q96QE3 CleanEx:HS_ATAD5
Genevestigator:Q96QE3 Uniprot:Q96QE3
Length = 1844
Score = 135 (52.6 bits), Expect = 5.2e-07, Sum P(4) = 5.2e-07
Identities = 30/114 (26%), Positives = 57/114 (50%)
Query: 284 KALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSS 343
+ L +AE+ KS K P + +N+E T+ + + + ++
Sbjct: 998 RKLVEAENSKSKRKK----PNEYSKNLE--KTNRKSEELSKRNNSSGIKLDSSKDSGTED 1051
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE 397
+ WTEKY+P+T +E++GN+ +K+LH+WL W + + ++N K + D E
Sbjct: 1052 MLWTEKYQPQTASELIGNELAIKKLHSWLKDWKRR-AELEERQNLKGKRDEKHE 1104
Score = 80 (33.2 bits), Expect = 5.2e-07, Sum P(4) = 5.2e-07
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 385 KRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434
K + + ++ +++G G+GKT A Q LGF+ EVNAS R
Sbjct: 1113 KGSSDDEEESRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNASSQR 1162
Score = 49 (22.3 bits), Expect = 5.2e-07, Sum P(4) = 5.2e-07
Identities = 32/146 (21%), Positives = 54/146 (36%)
Query: 442 SKGIGGS-NANSIKELVSNEALSANM------DRSKHPKTVLIM-DEVDGMSAGDRGGIA 493
+KGI S I + S A ++N+ + S+ T LI+ +EVD + D G +
Sbjct: 1260 NKGIKNSFEQKQITQTKSTNATNSNVKDVGAEEPSRKNATSLILFEEVDVIFDEDAGFLN 1319
Query: 494 DLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAEGLE 552
+ +D + + C +++F P +A L I E
Sbjct: 1320 AIKTFMATTKRPVILTTSD---PTFSLMFDGCFEEIKFSTPSLLNVASYLQMICLTENFR 1376
Query: 553 VNEIALEELADRVNGDIRMAINQLQY 578
+ L DIR +I LQ+
Sbjct: 1377 TDVKDFVTLLTANTCDIRKSILYLQF 1402
Score = 37 (18.1 bits), Expect = 5.2e-07, Sum P(4) = 5.2e-07
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 115 ATPSKKLKSGSGRAVAQKS 133
+T + KLKSG+ AV ++
Sbjct: 917 STLNSKLKSGNSAAVFMRT 935
>DICTYBASE|DDB_G0291868 [details] [associations]
symbol:rfc2 "replication factor C subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0006298
"mismatch repair" evidence=ISS] [GO:0006272 "leading strand
elongation" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0291868 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000186 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 OMA:IQCLARI Pfam:PF08542 RefSeq:XP_629875.1
HSSP:P40339 ProteinModelPortal:Q54E21 SMR:Q54E21 STRING:Q54E21
EnsemblProtists:DDB0232231 GeneID:8628373 KEGG:ddi:DDB_G0291868
ProtClustDB:CLSZ2728742 Uniprot:Q54E21
Length = 338
Score = 120 (47.3 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 38/192 (19%), Positives = 89/192 (46%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
I+SG PG GKT++ ++C L + N ++ + +A + + + +++ + +
Sbjct: 57 IISGPPGTGKTSS--ILC--LARALLGANYKEAVYELNASDDRTL-----DVVRDKIKSF 107
Query: 461 ALS-ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKLK 519
A+ + +H ++I+DEVD M++G + + + ++ ++ ++
Sbjct: 108 AMKKVTLPAGRHK--IIILDEVDSMTSGAQQALRRIMEIYSGTTRFAFAC--NQSTKIIE 163
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ + C+ LRF + +I RL ++ E + + L + GD+R A+N LQ
Sbjct: 164 PIQSRCAVLRFTRLSDSQILTRLREVVQIEKVPYTDDGLAAIIFTAEGDMRQALNNLQAT 223
Query: 580 SLSLSVIKYDDI 591
+I +++
Sbjct: 224 HSGFGLINAENV 235
Score = 71 (30.1 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHT 370
L W EKYRP +IVGN++ V +L +
Sbjct: 20 LPWVEKYRPILIKDIVGNEETVSRLES 46
>GENEDB_PFALCIPARUM|PF14_0601 [details] [associations]
symbol:PF14_0601 "replication factor C3"
species:5833 "Plasmodium falciparum" [GO:0005663 "DNA replication
factor C complex" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 121 (47.7 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 50/198 (25%), Positives = 87/198 (43%)
Query: 401 ILSGSPGMGKTTAAKLVCQML-GFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKE 455
+L G PG GKT+ VC+ L G + +E+NASD RG N I++
Sbjct: 50 LLHGPPGTGKTSTILAVCKELYGDKRSSFVLELNASDDRG--------------INVIRD 95
Query: 456 LVSNEALSANMDRSKHPKTV--LIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDR 513
+ A S N + T+ +I+DE D M+ + + +
Sbjct: 96 QIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLC---N 152
Query: 514 YSQKLKSLV-NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMA 572
Y K+ + + C+ RF +K+ + + + IA +E + + E ++ L +GD+R
Sbjct: 153 YVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRRI 212
Query: 573 INQLQYMSLSLSVIKYDD 590
+N LQ +SLS + D+
Sbjct: 213 LNCLQVVSLSHKNLVIDE 230
Score = 69 (29.3 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 342 SSLT-WTEKYRPKTPNEIVGNQQLVKQL 368
S LT W EKYRP N+I+ ++Q++ +
Sbjct: 10 SELTPWVEKYRPNVLNDIISHEQVISTI 37
>UNIPROTKB|Q8IKK4 [details] [associations]
symbol:PF14_0601 "Replication factor C3" species:36329
"Plasmodium falciparum 3D7" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 121 (47.7 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 50/198 (25%), Positives = 87/198 (43%)
Query: 401 ILSGSPGMGKTTAAKLVCQML-GFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKE 455
+L G PG GKT+ VC+ L G + +E+NASD RG N I++
Sbjct: 50 LLHGPPGTGKTSTILAVCKELYGDKRSSFVLELNASDDRG--------------INVIRD 95
Query: 456 LVSNEALSANMDRSKHPKTV--LIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDR 513
+ A S N + T+ +I+DE D M+ + + +
Sbjct: 96 QIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLC---N 152
Query: 514 YSQKLKSLV-NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMA 572
Y K+ + + C+ RF +K+ + + + IA +E + + E ++ L +GD+R
Sbjct: 153 YVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRRI 212
Query: 573 INQLQYMSLSLSVIKYDD 590
+N LQ +SLS + D+
Sbjct: 213 LNCLQVVSLSHKNLVIDE 230
Score = 69 (29.3 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 342 SSLT-WTEKYRPKTPNEIVGNQQLVKQL 368
S LT W EKYRP N+I+ ++Q++ +
Sbjct: 10 SELTPWVEKYRPNVLNDIISHEQVISTI 37
>TIGR_CMR|DET_0596 [details] [associations]
symbol:DET_0596 "DNA ligase, NAD-dependent" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004149 InterPro:IPR004150
InterPro:IPR013839 InterPro:IPR013840 InterPro:IPR018239
Pfam:PF01653 Pfam:PF03119 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 HOGENOM:HOG000218459 KO:K01972 GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 OMA:ENVRTIR
RefSeq:YP_181338.1 ProteinModelPortal:Q3Z8W1 STRING:Q3Z8W1
GeneID:3230074 KEGG:det:DET0596 PATRIC:21608263
ProtClustDB:CLSK2516600 BioCyc:DETH243164:GJNF-597-MONOMER
Uniprot:Q3Z8W1
Length = 677
Score = 149 (57.5 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 34/83 (40%), Positives = 48/83 (57%)
Query: 198 PEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKS 257
P P L G+ FV++G LDSL REEA+ I+ GG +V+K T YL+ D AG+K
Sbjct: 596 PSYKPLPLSGVEFVVTGKLDSLSREEAQQKIRSLGGTAKDNVTKATRYLVVGAD-AGSKL 654
Query: 258 TKAKELGTPFLTEDGLFDMIRAS 280
KA+ +G L+E +M+ S
Sbjct: 655 AKARSMGVKELSEQEFINMLEQS 677
>ZFIN|ZDB-GENE-030131-338 [details] [associations]
symbol:atad5b "ATPase family, AAA domain containing
5b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
ZFIN:ZDB-GENE-030131-338 GO:GO:0005524 GO:GO:0017111 EMBL:BC057535
IPI:IPI00508172 RefSeq:NP_001076298.2 UniGene:Dr.1990
ProteinModelPortal:Q6PFI7 GeneID:321619 KEGG:dre:321619 CTD:321619
HOVERGEN:HBG100651 InParanoid:Q6PFI7 NextBio:20807450
ArrayExpress:Q6PFI7 Uniprot:Q6PFI7
Length = 1060
Score = 128 (50.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 335 KGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDA 394
+ Q ++ + WT+KY+P+ +E++GN V+QLH+WL W + DT +R ++Q++
Sbjct: 356 QNQRLRVDDVLWTDKYQPQQSSEVIGNSASVRQLHSWLKEWKTR-ADTEERR--RRQDER 412
Query: 395 SAEKAAILSGSPG 407
+K A S G
Sbjct: 413 RMKKEAAESWDCG 425
Score = 73 (30.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434
+++G G+GKT A Q LGF+ EVN+S R
Sbjct: 445 LITGPSGVGKTAAVYACAQELGFKVFEVNSSALR 478
>UNIPROTKB|Q8WVB6 [details] [associations]
symbol:CHTF18 "Chromosome transmission fidelity protein 18
homolog" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260
EMBL:CH471112 GO:GO:0007049 GO:GO:0017111 HSSP:P38630
eggNOG:COG0470 EMBL:AK024476 EMBL:AL031033 EMBL:BC006278
EMBL:BC006437 EMBL:BC018184 IPI:IPI00414657 IPI:IPI00872454
IPI:IPI00895945 RefSeq:NP_071375.1 UniGene:Hs.153850
ProteinModelPortal:Q8WVB6 SMR:Q8WVB6 IntAct:Q8WVB6 STRING:Q8WVB6
DMDM:74751544 PaxDb:Q8WVB6 PRIDE:Q8WVB6 Ensembl:ENST00000262315
Ensembl:ENST00000455171 GeneID:63922 KEGG:hsa:63922 UCSC:uc002cke.4
UCSC:uc002ckf.4 CTD:63922 GeneCards:GC16P000838 HGNC:HGNC:18435
MIM:613201 neXtProt:NX_Q8WVB6 PharmGKB:PA134908713
HOVERGEN:HBG062099 KO:K11269 GenomeRNAi:63922 NextBio:65649
ArrayExpress:Q8WVB6 Bgee:Q8WVB6 CleanEx:HS_CHTF18
Genevestigator:Q8WVB6 Uniprot:Q8WVB6
Length = 975
Score = 148 (57.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 63/260 (24%), Positives = 108/260 (41%)
Query: 371 WLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
W +H E+ L+ + G + +K A+L G PG+GKTT A ++ + G+ +E+NA
Sbjct: 344 WKSH--EQVLEEMLEA-GLDPSQRPKQKVALLCGPPGLGKTTLAHVIARHAGYSVVEMNA 400
Query: 431 SDSRG--------KADAKISK--GIGGS-NANSIKELVSNEALSANMDRS----KHPKTV 475
SD R +A ++ G GG N I E+ + N+ S K P+ V
Sbjct: 401 SDDRSPEVFRTRIEAATQMESVLGAGGKPNCLVIDEIDGAPVAAINVLLSILNRKGPQEV 460
Query: 476 LIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRK 535
G + GG ND+++ L+ L L F
Sbjct: 461 ----GPQGPAVPSGGG-RRRRAEGGLLMRPIICICNDQFAPSLRQLKQQAFLLHFPPTLP 515
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM-SLSLSVIKYDDIRQR 594
+ +RL +++ +G+ + L L ++ + DIR IN LQ++ S + D+ Q
Sbjct: 516 SRLVQRLQEVSLRQGMRADPGVLAALCEKTDNDIRACINTLQFLYSRGQRELSVRDV-QA 574
Query: 595 LLSSAKDEDISPFTAVDKLF 614
KD+ F+ ++F
Sbjct: 575 TRVGLKDQRRGLFSVWQEVF 594
>TIGR_CMR|NSE_0500 [details] [associations]
symbol:NSE_0500 "DNA ligase, NAD-dependent" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003911 "DNA ligase
(NAD+) activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119
Pfam:PF03120 PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00532 InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872
GO:GO:0006260 GO:GO:0006281 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
EMBL:CP000237 GenomeReviews:CP000237_GR InterPro:IPR010994
SUPFAM:SSF47781 eggNOG:COG0272 KO:K01972 GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 HOGENOM:HOG000218458
OMA:ENVRTIR RefSeq:YP_506384.1 ProteinModelPortal:Q2GDR2
STRING:Q2GDR2 PRIDE:Q2GDR2 GeneID:3931734 KEGG:nse:NSE_0500
PATRIC:22681049 ProtClustDB:CLSK2527991
BioCyc:NSEN222891:GHFU-520-MONOMER Uniprot:Q2GDR2
Length = 670
Score = 145 (56.1 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELG 264
L G FV +GTL S+ REEA+++IK+ GG V S+SK+ +Y++ E AG+K KA ELG
Sbjct: 584 LSGKKFVFTGTLLSITREEAKEIIKKAGGIVVNSISKQIDYVVAGEK-AGSKLAKANELG 642
Query: 265 TPFLTEDGLFD 275
+ E L +
Sbjct: 643 IAIIEEKTLIE 653
>UNIPROTKB|F1NIY0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917
EMBL:AADN02020726 IPI:IPI00574772 Ensembl:ENSGALT00000014162
ArrayExpress:F1NIY0 Uniprot:F1NIY0
Length = 359
Score = 114 (45.2 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 48/197 (24%), Positives = 84/197 (42%)
Query: 389 KKQNDASAEKAAILSGSPGMGKT-TAAKLVCQMLG---FQ--AIEVNASDSRGKADAKIS 442
KK + + + G PG GKT T ++ G F+ +E+NASD RG ++
Sbjct: 61 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERG---IQVI 117
Query: 443 KGIGGSNANSIKELVSNEALSANMDRSKHPK-TVLIMDEVDGMSAGDRGGIADLXXXXXX 501
+ +K A + D P ++I+DE D M++ + +
Sbjct: 118 R-------EKVKAFAQLTASGSRADGKVCPPFKIVILDEADSMTSAAQAALR--RTMEKE 168
Query: 502 XXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK-RLMQIANAEGLEVNEIALEE 560
+ S+ ++ L + CS RF KP +I + RL+ ++ E +++ A+
Sbjct: 169 SKTTRFCLICNYISRIIEPLTSRCSKFRF-KPLSDKIQQQRLLDVSEKENVKITSEAVSY 227
Query: 561 LADRVNGDIRMAINQLQ 577
L +GD+R AI LQ
Sbjct: 228 LVKVSDGDLRKAITYLQ 244
Score = 71 (30.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 305 KSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL 364
K P +I +K P A ER S A G+ + + W EKYRPK +E+ ++
Sbjct: 6 KGPSSISSK----PPAAKER-----SAAGSSGEGKKLKPVPWVEKYRPKNVDEVAFQDEV 56
Query: 365 VKQL 368
V L
Sbjct: 57 VAVL 60
>UNIPROTKB|F1NEW1 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:AADN02020726 IPI:IPI00819051 PRIDE:F1NEW1
Ensembl:ENSGALT00000039711 ArrayExpress:F1NEW1 Uniprot:F1NEW1
Length = 362
Score = 114 (45.2 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 48/197 (24%), Positives = 84/197 (42%)
Query: 389 KKQNDASAEKAAILSGSPGMGKT-TAAKLVCQMLG---FQ--AIEVNASDSRGKADAKIS 442
KK + + + G PG GKT T ++ G F+ +E+NASD RG ++
Sbjct: 61 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERG---IQVI 117
Query: 443 KGIGGSNANSIKELVSNEALSANMDRSKHPK-TVLIMDEVDGMSAGDRGGIADLXXXXXX 501
+ +K A + D P ++I+DE D M++ + +
Sbjct: 118 R-------EKVKAFAQLTASGSRADGKVCPPFKIVILDEADSMTSAAQAALR--RTMEKE 168
Query: 502 XXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK-RLMQIANAEGLEVNEIALEE 560
+ S+ ++ L + CS RF KP +I + RL+ ++ E +++ A+
Sbjct: 169 SKTTRFCLICNYISRIIEPLTSRCSKFRF-KPLSDKIQQQRLLDVSEKENVKITSEAVSY 227
Query: 561 LADRVNGDIRMAINQLQ 577
L +GD+R AI LQ
Sbjct: 228 LVKVSDGDLRKAITYLQ 244
Score = 71 (30.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 305 KSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL 364
K P +I +K P A ER S A G+ + + W EKYRPK +E+ ++
Sbjct: 6 KGPSSISSK----PPAAKER-----SAAGSSGEGKKLKPVPWVEKYRPKNVDEVAFQDEV 56
Query: 365 VKQL 368
V L
Sbjct: 57 VAVL 60
>ZFIN|ZDB-GENE-050522-508 [details] [associations]
symbol:chtf18 "CTF18, chromosome transmission
fidelity factor 18 homolog (S. cerevisiae)" species:7955 "Danio
rerio" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
ZFIN:ZDB-GENE-050522-508 GO:GO:0005524 GO:GO:0017111 CTD:63922
KO:K11269 GeneTree:ENSGT00550000075029 OMA:TMLAYNL EMBL:BX323038
EMBL:BX004779 IPI:IPI00810052 RefSeq:NP_001103572.2
UniGene:Dr.83128 ProteinModelPortal:F1QF60
Ensembl:ENSDART00000092058 GeneID:554366 KEGG:dre:554366
NextBio:20880755 ArrayExpress:F1QF60 Bgee:F1QF60 Uniprot:F1QF60
Length = 957
Score = 160 (61.4 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 64/232 (27%), Positives = 103/232 (44%)
Query: 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG------KAD-AKISKGIGGSNA 450
K A+LSG PG+GKTT A ++ + G+ +E+NASD R + D A K + G+N
Sbjct: 367 KVALLSGPPGLGKTTLAHIIAKHAGYNVVEINASDDRSAELFQKRIDTATQMKSVLGANE 426
Query: 451 NS----IKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXX 506
I E+ A + N+ + T+ D DG G +
Sbjct: 427 KPNCLIIDEIDGAPAAAINILLA----TLNRKDSKDGEETGVNA-LKKKKKKQSVLLRPI 481
Query: 507 XXXXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN 566
ND Y L+ L L F + +A+RL +I+ +G++ + L L ++ +
Sbjct: 482 ICICNDLYVPALRPLRQQAFLLVFPQTLPSRLAQRLAEISRRQGMKADTGTLMALCEKTD 541
Query: 567 GDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSA----KDEDISPFTAVDKLF 614
DIR IN LQ++ K+ D QR +SS KD++ F+ ++F
Sbjct: 542 NDIRSCINTLQFLHSRGQ--KHLD--QRSVSSMCVGLKDQNKGLFSVWQEIF 589
Score = 40 (19.1 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 751 KSKLGRDTLRLDYFSLLLKQLTEPLR 776
+S++ +L LD SLLL+ ++ LR
Sbjct: 736 QSRVCMSSLCLDILSLLLELISPKLR 761
Score = 37 (18.1 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 298 VAASLP-KKSPQNIEAKSTSAPKAPIERMKTVASPAKRK 335
V+ P +KS N +S S P E P KR+
Sbjct: 55 VSGDQPSRKSVNNQNPESISPPVYEEEEESLTPKPKKRR 93
>TAIR|locus:2204710 [details] [associations]
symbol:RFC3 "replication factor C subunit 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031348 "negative regulation of defense
response" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0031348 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:ILACARQ HSSP:Q8U4J3
EMBL:AY065452 EMBL:AY117282 IPI:IPI00521569 PIR:A96804
RefSeq:NP_177871.1 UniGene:At.28476 UniGene:At.70634
ProteinModelPortal:Q9CAQ8 SMR:Q9CAQ8 STRING:Q9CAQ8 PaxDb:Q9CAQ8
PRIDE:Q9CAQ8 EnsemblPlants:AT1G77470.1 GeneID:844083
KEGG:ath:AT1G77470 TAIR:At1g77470 InParanoid:Q9CAQ8
PhylomeDB:Q9CAQ8 ProtClustDB:CLSN2682996 ArrayExpress:Q9CAQ8
Genevestigator:Q9CAQ8 Uniprot:Q9CAQ8
Length = 369
Score = 117 (46.2 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 48/198 (24%), Positives = 86/198 (43%)
Query: 401 ILSGSPGMGKTTAAKLVCQML-GFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKE 455
+L G PG GKT+ V + L G + +E+NASD RG D I++
Sbjct: 76 LLYGPPGTGKTSTILAVARKLYGPKYRNMILELNASDDRG-IDVV---------RQQIQD 125
Query: 456 LVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYS 515
S ++ S K ++++DE D M+ + + + + +
Sbjct: 126 FASTQSFSLGKSSVK----LVLLDEADAMTKDAQFALRRVIEKYTKSTRFALI--GNHVN 179
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ + +L + C+ RF +++RL + AE L V++ L L NGD+R A+N
Sbjct: 180 KIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKALNI 239
Query: 576 LQYMSLSLSVIKYDDIRQ 593
LQ ++ I ++ +Q
Sbjct: 240 LQSTHMASKEITEEESKQ 257
Score = 64 (27.6 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 318 PKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLV 365
P+ PI + K V G Q + W EKYRP++ +++ ++ ++
Sbjct: 17 PRKPINKGKDVVG----FGPPPQSKATPWVEKYRPQSLDDVAAHRDII 60
>UNIPROTKB|E1B8Q4 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0017111 CTD:63922
KO:K11269 GeneTree:ENSGT00550000075029 OMA:TMLAYNL
EMBL:DAAA02057284 IPI:IPI00717859 RefSeq:NP_001179389.1
UniGene:Bt.60318 Ensembl:ENSBTAT00000026311 GeneID:517007
KEGG:bta:517007 NextBio:20872353 Uniprot:E1B8Q4
Length = 978
Score = 141 (54.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 56/222 (25%), Positives = 92/222 (41%)
Query: 371 WLAHWN--EKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428
W +H E+ L+ +G+ + +K A+L G PG+GKTT A ++ + G+ +E+
Sbjct: 345 WKSHEQVLEEMLEAELDPSGRPR-----QKVALLCGPPGLGKTTLAHVIARHAGYCVVEM 399
Query: 429 NASDSRG--------KADAKISK--GIGGS-NANSIKELVSNEALSANMDRSKHPKTVLI 477
NASD R +A ++ G GG N I E+ + N+ S +
Sbjct: 400 NASDDRSPEAFRTRIEAATQMESVLGAGGRPNCLVIDEIDGAPTAAINVLLSVLDRKGPQ 459
Query: 478 MDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQE 537
G S GG ND ++ L+ L L F
Sbjct: 460 QAGPGGPSVPTGGG-RRRRAEAGLLMRPIICICNDPFAPSLRQLKQQALLLHFPPTLPSR 518
Query: 538 IAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ +RL +I+ G+ + AL L ++ + DIR IN LQ++
Sbjct: 519 LMQRLQEISLRRGMRADPGALAALCEKTDNDIRACINALQFL 560
Score = 47 (21.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 337 QNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN 376
Q+ Q L W +++ P+ E++ + + L WL W+
Sbjct: 275 QDASQHCL-WVDEFAPQRYTELLSDDFTNRCLLKWLKLWD 313
>RGD|1310473 [details] [associations]
symbol:Chtf18 "CTF18, chromosome transmission fidelity factor 18
homolog (S. cerevisiae)" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR010372 Pfam:PF00004 Pfam:PF06144 SMART:SM00382
RGD:1310473 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 EMBL:CH473948 GO:GO:0003887 CTD:63922
KO:K11269 GeneTree:ENSGT00550000075029 OrthoDB:EOG44QT0B
GO:GO:0009360 OMA:TMLAYNL IPI:IPI00369267 RefSeq:NP_001099243.1
UniGene:Rn.53402 Ensembl:ENSRNOT00000026139 GeneID:287146
KEGG:rno:287146 UCSC:RGD:1310473 NextBio:625609 Uniprot:D4AC99
Length = 968
Score = 138 (53.6 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 51/194 (26%), Positives = 82/194 (42%)
Query: 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG--------KADAKISK--GIG 446
+K A+L G PG+GKTT A +V + G+ +E+NASD R +A ++ G G
Sbjct: 360 QKVALLCGPPGLGKTTLAHVVARHAGYCVVEMNASDDRSPEAFRTRIEAATQMESVLGAG 419
Query: 447 GS-NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXX 505
G N I E+ + N+ S + E G + GG
Sbjct: 420 GRPNCLVIDEIDGAPTAAINVLLSILNRKGPQEAEQGGTAVAAAGG-RRRRAEGGLLTRP 478
Query: 506 XXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV 565
ND+++ L+ L L + +RL +I+ G+ + AL L ++
Sbjct: 479 IICICNDQFTPSLRQLKQQALLLHVPPTLPSRLVQRLQEISLQHGMRSDPGALAALCEKT 538
Query: 566 NGDIRMAINQLQYM 579
+ DIR IN LQ++
Sbjct: 539 DNDIRACINTLQFL 552
>MGI|MGI:2384887 [details] [associations]
symbol:Chtf18 "CTF18, chromosome transmission fidelity
factor 18" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
MGI:MGI:2384887 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 GO:GO:0007049 GO:GO:0017111 HSSP:P38630
eggNOG:COG0470 CTD:63922 HOVERGEN:HBG062099 KO:K11269 EMBL:AK077947
EMBL:BC024142 IPI:IPI00153429 RefSeq:NP_663384.2 UniGene:Mm.102540
ProteinModelPortal:Q8BIW9 SMR:Q8BIW9 STRING:Q8BIW9
PhosphoSite:Q8BIW9 PaxDb:Q8BIW9 PRIDE:Q8BIW9
Ensembl:ENSMUST00000048054 GeneID:214901 KEGG:mmu:214901
UCSC:uc008bbk.2 GeneTree:ENSGT00550000075029 HOGENOM:HOG000067805
InParanoid:Q8BIW9 OrthoDB:EOG44QT0B NextBio:374509 Bgee:Q8BIW9
Genevestigator:Q8BIW9 Uniprot:Q8BIW9
Length = 969
Score = 138 (53.6 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 52/200 (26%), Positives = 86/200 (43%)
Query: 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG--------KADAKISK--GIG 446
+K A+L G PG+GKTT A +V + G+ +E+NASD R +A ++ G+G
Sbjct: 362 QKVALLCGPPGLGKTTLAHVVARHAGYCVVEMNASDDRSPEAFRTRIEAATQMESVLGVG 421
Query: 447 GS-NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXX 505
G N I E+ + N+ + I++ G D+GG A
Sbjct: 422 GRPNCLVIDEIDGAPTAAINV-------LLGILNR-KGPQEADQGGTAVAAGGRRRRAEG 473
Query: 506 XXXXX------NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALE 559
ND+++ L+ L L + +RL +I+ G+ + AL
Sbjct: 474 GLLTRPIICICNDQFTPSLRQLKQQALLLHVPPTLPSRLVQRLQEISLQHGMRSDPGALV 533
Query: 560 ELADRVNGDIRMAINQLQYM 579
L ++ + DIR IN LQ++
Sbjct: 534 ALCEKTDNDIRACINTLQFL 553
>UNIPROTKB|I3LC39 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0017111
GeneTree:ENSGT00550000075029 OMA:TMLAYNL EMBL:FP016225
Ensembl:ENSSSCT00000031631 Uniprot:I3LC39
Length = 1007
Score = 138 (53.6 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 63/251 (25%), Positives = 102/251 (40%)
Query: 347 TEKYRPKTPNEIVGNQQLVKQLHTWLAHWN--EKFLDTGTKRNGKKQNDASAEKAAILSG 404
T K RP G + W +H E+ L+ +G+ + +K A+L G
Sbjct: 355 TRKPRPSVEPACGGKEATASS--KWKSHEQVLEEMLEAELDPSGRPR-----QKVALLCG 407
Query: 405 SPGMGKTTAAKLVCQMLGFQAIEVNASDSRG--------KADAKISK--GIGGS-NANSI 453
PG+GKTT A ++ + G+ +E+NASD R +A ++ G GG N I
Sbjct: 408 PPGLGKTTLAHVIARHAGYCVVEMNASDDRSPEAFRTRIEAATQMESVLGSGGRPNCLVI 467
Query: 454 KELVSNEALSAN-----MDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXX 508
E+ + N +DR K P+ + G A GG
Sbjct: 468 DEIDGAPTAAINVLLSVLDR-KGPQ-----EAEPGAPAMAAGGGRRRRAEGGLLMRPIIC 521
Query: 509 XXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGD 568
ND+++ L+ L L F + +RL + G++ + AL L ++ + D
Sbjct: 522 ICNDQFAPSLRQLKPQALLLHFPPTLPSRLTQRLQE---QRGMQADPGALAALCEKTDND 578
Query: 569 IRMAINQLQYM 579
IR IN LQ++
Sbjct: 579 IRACINALQFL 589
>TIGR_CMR|SO_2896 [details] [associations]
symbol:SO_2896 "DNA ligase, NAD-dependent" species:211586
"Shewanella oneidensis MR-1" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004149 InterPro:IPR004150
InterPro:IPR013839 InterPro:IPR013840 InterPro:IPR018239
Pfam:PF01653 Pfam:PF03119 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 HOGENOM:HOG000218459 KO:K01972 GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 HSSP:O87703 OMA:ENVRTIR
RefSeq:NP_718468.1 ProteinModelPortal:Q8ED70 SMR:Q8ED70
GeneID:1170586 KEGG:son:SO_2896 PATRIC:23525434
ProtClustDB:CLSK906920 Uniprot:Q8ED70
Length = 689
Score = 146 (56.5 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
E P L G T+V++GTL+ L R +A+ ++ G +V GSVSK T+ L+ E AG+
Sbjct: 605 EAPSADEQPLKGQTWVLTGTLNQLNRNDAKAQLQVLGAKVAGSVSKNTDCLVAGE-AAGS 663
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASK 281
K KA+ELG + ED L ++ A++
Sbjct: 664 KLAKAQELGVKVIGEDELLALLAANR 689
Score = 37 (18.1 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 3 QDIRKWFLKPHSKDKDNATIPANTALSNLETTNSE 37
Q + +F +PH+ + +A I A +E +++
Sbjct: 576 QHVAHFFAQPHNLEVIDALIAAGVNWPAIEAPSAD 610
>UNIPROTKB|D4A058 [details] [associations]
symbol:Atad5 "Protein Atad5" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 OrthoDB:EOG4NP731
GeneTree:ENSGT00670000098003 IPI:IPI00393921
Ensembl:ENSRNOT00000035642 RGD:1561464 ArrayExpress:D4A058
Uniprot:D4A058
Length = 1336
Score = 142 (55.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 41/126 (32%), Positives = 62/126 (49%)
Query: 286 LAQAESK-KSVEKVAASLPKK-------SPQNIEAKSTSAPKAPIERMKTVASPAKRKGQ 337
++Q E+K K VE + +K SP+ I+ KS K I P+K G
Sbjct: 985 VSQKETKRKQVETGSQKSKRKKPNEYSVSPEKIKGKSKELDKR-ISSSCINLDPSKESGT 1043
Query: 338 NIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE 397
+ WTEKY+P+ NE+VGN+ +K+LH+WL W + + ++N K + D E
Sbjct: 1044 E----DMLWTEKYQPQNSNELVGNELAIKKLHSWLKDWKRR-AELEERQNLKGKRDEKEE 1098
Query: 398 KAAILS 403
ILS
Sbjct: 1099 --GILS 1102
Score = 47 (21.6 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 22/93 (23%), Positives = 34/93 (36%)
Query: 3 QDIRKWFLKPHSKDKDNATIPANTALSNLETTNSEPGCG--GHESMGRRKTSKY-FATDK 59
+ +R KP K KD + N SN E P ++ + + F +K
Sbjct: 419 ETLRNGLKKPLEKQKDPSEKSVNEGDSNSEKIIENPNIQRVSNQDCSQAHADRGGFPKEK 478
Query: 60 QK-PEDGGEKEELPAKRKAEKDDGKSVRSSPLK 91
K P G+K A E++ K + LK
Sbjct: 479 SKRPNKKGKKTRTTAAGNREENMQKEKTAFSLK 511
Score = 44 (20.5 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 22/90 (24%), Positives = 34/90 (37%)
Query: 36 SEPGCGGHESMGRRKTSKYFATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHK 95
S PG GG +S + +K TD+ + + K + +V K HK
Sbjct: 227 SLPGEGGKDS----RLTKASLTDENRTAHHVDSRAHATKIADLNESTITVSYEEFLKSHK 282
Query: 96 AXXXXXXFVPPSVKKNSVGATPSKKLKSGS 125
+P V + PS+ +KSGS
Sbjct: 283 TAKVED--IPDLAGPACVPSGPSEAIKSGS 310
>RGD|1309515 [details] [associations]
symbol:Rad17 "RAD17 homolog (S. pombe)" species:10116 "Rattus
norvegicus" [GO:0000077 "DNA damage checkpoint" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006974 "response to DNA
damage stimulus" evidence=ISO] [GO:0007093 "mitotic cell cycle
checkpoint" evidence=ISO] [GO:0008156 "negative regulation of DNA
replication" evidence=ISO] [GO:0042325 "regulation of
phosphorylation" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0000781 "chromosome, telomeric region"
evidence=ISO] InterPro:IPR003593 InterPro:IPR004582
InterPro:IPR018324 SMART:SM00382 RGD:1309515 GO:GO:0005524
GO:GO:0005634 GO:GO:0006281 GO:GO:0007049 GO:GO:0017111
eggNOG:COG0470 KO:K06662 PANTHER:PTHR12172 CTD:5884
HOVERGEN:HBG059834 OrthoDB:EOG4229J6 TIGRFAMs:TIGR00602
HOGENOM:HOG000013176 IPI:IPI00360297 EMBL:BC098057
RefSeq:NP_001019949.1 UniGene:Rn.154275 ProteinModelPortal:Q4V7A2
STRING:Q4V7A2 GeneID:310034 KEGG:rno:310034 UCSC:RGD:1309515
InParanoid:Q4V7A2 NextBio:661568 Genevestigator:Q4V7A2
Uniprot:Q4V7A2
Length = 686
Score = 114 (45.2 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 33/127 (25%), Positives = 58/127 (45%)
Query: 304 KKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQ 363
K P +E+ SA K R+ + + W +KY+P+T +E+ +++
Sbjct: 50 KYLPSTLESNRLSARKRG--RLPLEQTNGLETSKEYLSDDEPWVDKYKPETQHELAVHKK 107
Query: 364 LVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423
++++ TWL + L+ K G +++G PG GKTT K++ + LG
Sbjct: 108 KIEEVETWL---KTQVLEVKPKHGGS---------ILLITGPPGCGKTTTIKILSKELGI 155
Query: 424 QAIE-VN 429
Q E VN
Sbjct: 156 QVQEWVN 162
Score = 69 (29.3 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 547 NAEGLEV-NEIALEELADRVNGDIRMAINQLQYMS 580
N E + V N+ +LE L +GDIR AIN LQ+ S
Sbjct: 309 NGEKITVPNKASLELLCQGCSGDIRSAINSLQFSS 343
>UNIPROTKB|E9PTL1 [details] [associations]
symbol:Rad17 "Protein Rad17" species:10116 "Rattus
norvegicus" [GO:0000077 "DNA damage checkpoint" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0007093
"mitotic cell cycle checkpoint" evidence=IEA] [GO:0008156 "negative
regulation of DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0042325
"regulation of phosphorylation" evidence=IEA] InterPro:IPR003593
InterPro:IPR004582 InterPro:IPR018324 SMART:SM00382 RGD:1309515
GO:GO:0005524 GO:GO:0005634 GO:GO:0000077 GO:GO:0042325
GO:GO:0006281 GO:GO:0017111 GO:GO:0007093 GO:GO:0000781
GO:GO:0008156 PANTHER:PTHR12172 OMA:NYIDFFM TIGRFAMs:TIGR00602
GeneTree:ENSGT00440000039046 IPI:IPI00360297
Ensembl:ENSRNOT00000024801 Uniprot:E9PTL1
Length = 686
Score = 114 (45.2 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 33/127 (25%), Positives = 58/127 (45%)
Query: 304 KKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQ 363
K P +E+ SA K R+ + + W +KY+P+T +E+ +++
Sbjct: 50 KYLPSTLESNRLSARKRG--RLPLEQTNGLETSKEYLSDDEPWVDKYKPETQHELAVHKK 107
Query: 364 LVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423
++++ TWL + L+ K G +++G PG GKTT K++ + LG
Sbjct: 108 KIEEVETWL---KTQVLEVKPKHGGS---------ILLITGPPGCGKTTTIKILSKELGI 155
Query: 424 QAIE-VN 429
Q E VN
Sbjct: 156 QVQEWVN 162
Score = 69 (29.3 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 547 NAEGLEV-NEIALEELADRVNGDIRMAINQLQYMS 580
N E + V N+ +LE L +GDIR AIN LQ+ S
Sbjct: 309 NGEKITVPNKASLELLCQGCSGDIRSAINSLQFSS 343
>ASPGD|ASPL0000017750 [details] [associations]
symbol:AN8064 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0031389 "Rad17 RFC-like complex" evidence=IEA] [GO:0006272
"leading strand elongation" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000139 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8 OMA:ILACARQ
RefSeq:XP_681333.1 ProteinModelPortal:Q5AUG6 STRING:Q5AUG6
EnsemblFungi:CADANIAT00004090 GeneID:2869010 KEGG:ani:AN8064.2
Uniprot:Q5AUG6
Length = 398
Score = 130 (50.8 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 51/184 (27%), Positives = 85/184 (46%)
Query: 401 ILSGSPGMGKT-TAAKLVCQMLGFQ-----AIEVNASDSRGKADAKISKGIGGSNANSIK 454
+L G PG GKT T L ++ G + +E+NASD RG D + + I S K
Sbjct: 82 LLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRG-IDV-VREQI--KTFASTK 137
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRY 514
++ S A SA S ++I+DE D M++ + + + Y
Sbjct: 138 QIFSM-APSATGKSSLASFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIA---NY 193
Query: 515 SQKLK-SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
+ KL +L++ C+ RF ++Q+I + Q+ E + + A++ L GD+R A+
Sbjct: 194 THKLSPALLSRCTRFRFSPLKEQDIRVLIDQVIEKEDVRIQPEAVDSLVTLSRGDMRRAL 253
Query: 574 NQLQ 577
N LQ
Sbjct: 254 NVLQ 257
>UNIPROTKB|I3LHX6 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 GeneTree:ENSGT00550000075050 OMA:IQCLARI Pfam:PF08542
EMBL:FP340223 Ensembl:ENSSSCT00000028815 Uniprot:I3LHX6
Length = 295
Score = 127 (49.8 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 43/178 (24%), Positives = 80/178 (44%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
I++G PG GKTT+ + + L A++ D+ + +A +GI N IK +
Sbjct: 14 IIAGPPGTGKTTSILCLARALLGPALK----DAVLELNASNDRGIDVVR-NKIKMFAQQK 68
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIA-DLXXXXXXXXXXXXXXXNDRYSQKLK 519
+ + +H ++I+DE D M+ G + + + +D+ + ++
Sbjct: 69 V---TLPKGRHK--IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQ 123
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
S C+ LR+ K +I RL+ + E + + LE + GD+R A+N LQ
Sbjct: 124 SR---CAVLRYTKLTDAQILARLLNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQ 178
>MGI|MGI:1333807 [details] [associations]
symbol:Rad17 "RAD17 homolog (S. pombe)" species:10090 "Mus
musculus" [GO:0000077 "DNA damage checkpoint" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=ISO;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0007093 "mitotic cell cycle checkpoint"
evidence=ISO] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0008156 "negative regulation of DNA replication"
evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0042325 "regulation of phosphorylation"
evidence=ISO] InterPro:IPR003593 InterPro:IPR004582
InterPro:IPR018324 SMART:SM00382 MGI:MGI:1333807 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0000077 GO:GO:0042325
GO:GO:0006281 GO:GO:0006974 GO:GO:0017111 GO:GO:0007093
eggNOG:COG0470 GO:GO:0000781 GO:GO:0008156 KO:K06662
PANTHER:PTHR12172 CTD:5884 HOVERGEN:HBG059834 OMA:NYIDFFM
OrthoDB:EOG4229J6 TIGRFAMs:TIGR00602 EMBL:AF085737 EMBL:AJ011923
EMBL:BC066855 IPI:IPI00136368 RefSeq:NP_001037836.1
RefSeq:NP_035363.2 UniGene:Mm.248489 ProteinModelPortal:Q6NXW6
SMR:Q6NXW6 DIP:DIP-59315N STRING:Q6NXW6 PhosphoSite:Q6NXW6
PRIDE:Q6NXW6 Ensembl:ENSMUST00000022136 Ensembl:ENSMUST00000177848
GeneID:19356 KEGG:mmu:19356 GeneTree:ENSGT00440000039046
HOGENOM:HOG000013176 InParanoid:Q6NXW6 NextBio:296399 Bgee:Q6NXW6
CleanEx:MM_RAD17 Genevestigator:Q6NXW6
GermOnline:ENSMUSG00000021635 Uniprot:Q6NXW6
Length = 688
Score = 116 (45.9 bits), Expect = 5.8e-05, Sum P(3) = 5.8e-05
Identities = 33/127 (25%), Positives = 60/127 (47%)
Query: 304 KKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQ 363
K P +E+ SA K R+ + + + W +KY+P+T +E+ +++
Sbjct: 50 KYLPSTLESNRLSARKRG--RLSLEQTHGLETSRERLSDNEPWVDKYKPETQHELAVHKK 107
Query: 364 LVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423
++++ TWL + L+ K+ G +++G PG GKTT K++ + LG
Sbjct: 108 KIEEVETWL---KAQVLEVKPKQGGS---------VLLITGPPGCGKTTTIKILSKELGI 155
Query: 424 QAIE-VN 429
Q E VN
Sbjct: 156 QVQEWVN 162
Score = 67 (28.6 bits), Expect = 5.8e-05, Sum P(3) = 5.8e-05
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 547 NAEGLEV-NEIALEELADRVNGDIRMAINQLQYMS 580
N E + V N+ +LE L +GDIR AIN LQ+ S
Sbjct: 309 NGEKIIVPNKTSLELLCQGCSGDIRSAINSLQFSS 343
Score = 40 (19.1 bits), Expect = 5.8e-05, Sum P(3) = 5.8e-05
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 624 DERIDLSMSDPDLVPLLIQENYINY 648
+E +++S D L + +NYI++
Sbjct: 435 EEIVEMSHMPGDFFNLYLHQNYIDF 459
>ASPGD|ASPL0000063791 [details] [associations]
symbol:AN10917 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 EMBL:BN001304 GO:GO:0017111
EnsemblFungi:CADANIAT00000194 OMA:FIMTCND Uniprot:C8VCW2
Length = 1127
Score = 82 (33.9 bits), Expect = 7.2e-05, Sum P(3) = 7.2e-05
Identities = 23/68 (33%), Positives = 31/68 (45%)
Query: 387 NGKKQNDASA-EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI 445
N K +D S A +LSG G GKT + V + + F+ E+NA R D I I
Sbjct: 531 NLKSSSDRSRIANAILLSGPSGCGKTASVYAVAKEMDFEVFEINAGSRRSAKD--ILDRI 588
Query: 446 GGSNANSI 453
G N +
Sbjct: 589 GDMTQNHL 596
Score = 79 (32.9 bits), Expect = 7.2e-05, Sum P(3) = 7.2e-05
Identities = 31/158 (19%), Positives = 58/158 (36%)
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVE------KVAASL 302
D + K+K + E+ + +++S + AL + SK+ + KV L
Sbjct: 320 DRQATATDNRKSKTPAVQVIDEENVLSFLKSSDILPALRKP-SKQVISGRVLQAKVGKRL 378
Query: 303 PKK--SPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVG 360
+ S EA S + + R+ T + + + W KY P T +++
Sbjct: 379 MGRGASSDTDEAPSPDTLHSAVARLYTSLPSSMSAFERGDYEAQLWAHKYAPSTAKQVLC 438
Query: 361 NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK 398
+ L WL H +D G+ ++ EK
Sbjct: 439 ATKEALMLRDWLNHLVVSSVDVGSSSRDNEKAKRKQEK 476
Score = 70 (29.7 bits), Expect = 7.2e-05, Sum P(3) = 7.2e-05
Identities = 25/113 (22%), Positives = 49/113 (43%)
Query: 470 KHPKT----VLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYC 525
KH +T +++++E D + D+ + + ND L +++
Sbjct: 652 KHSRTQKQSLILLEEADILFEEDKQFWSGVLTLINQSKRPIVITCNDESLIPLDD-ISFH 710
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ LR+R P + L+ +A +EG + A+E L D+R +I +L Y
Sbjct: 711 AILRYRAPSQGLAVDYLLLMAASEGHILQRTAVERLYSSTRNDLRKSIMELNY 763
>MGI|MGI:2442925 [details] [associations]
symbol:Atad5 "ATPase family, AAA domain containing 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 MGI:MGI:2442925 GO:GO:0005524 GO:GO:0005634
GO:GO:0006974 GO:GO:0017111 HSSP:P38630 CTD:79915 eggNOG:COG0470
HOVERGEN:HBG101177 OMA:LDVYNAV EMBL:AY557610 EMBL:AK032814
EMBL:AK053857 EMBL:AK085211 EMBL:AK136531 EMBL:AK165945
EMBL:AL591113 EMBL:AL663057 EMBL:AL672178 EMBL:BC038279
IPI:IPI00408664 IPI:IPI00885914 RefSeq:NP_001025027.1
UniGene:Mm.89551 ProteinModelPortal:Q4QY64 SMR:Q4QY64 IntAct:Q4QY64
STRING:Q4QY64 PhosphoSite:Q4QY64 PRIDE:Q4QY64 DNASU:237877
Ensembl:ENSMUST00000017694 Ensembl:ENSMUST00000108239 GeneID:237877
KEGG:mmu:237877 UCSC:uc007klf.2 UCSC:uc007klg.2
GeneTree:ENSGT00670000098003 InParanoid:Q4QY64 ChiTaRS:ATAD5
NextBio:383540 Bgee:Q4QY64 CleanEx:MM_ATAD5 CleanEx:MM_FRAG1
Genevestigator:Q4QY64 Uniprot:Q4QY64
Length = 1826
Score = 134 (52.2 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 31/100 (31%), Positives = 50/100 (50%)
Query: 306 SPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLV 365
SP+ ++ +S + I T P++ G + WTEKY+P+ NE++GN+ V
Sbjct: 1004 SPEEMKGRSKDLDER-ISSSCTNLDPSRDSGTE----DMLWTEKYQPQNSNELIGNELAV 1058
Query: 366 KQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
K+LH+WL W + + + N K + D E LS S
Sbjct: 1059 KKLHSWLKDWKRR-AELEERHNLKGKRDEKEEGILDLSDS 1097
Score = 53 (23.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 23/84 (27%), Positives = 36/84 (42%)
Query: 56 ATDKQKPEDGGEKEELPAKRKAEKDDGKS--VRSSPLK------------KFHKAXXXXX 101
A + PEDGG+ +L AE++D ++ + + LK K HKA
Sbjct: 219 ADELSLPEDGGKDSKLTKPSLAEENDSRTHATKRADLKESTITVSYEEFVKSHKAAKVEE 278
Query: 102 XFVPPSVKKNSVGATPSKKLKSGS 125
+P V + P + +KSGS
Sbjct: 279 --IPDPAVPACVPSGPGEAVKSGS 300
Score = 50 (22.7 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 23/94 (24%), Positives = 36/94 (38%)
Query: 2 PQDIRKWFLKPHSKDKDNATIPANTALSNLETTNSEPGCGGHESMGRRKTSK---YFATD 58
P ++ F KP K KD + + S+ E P S G ++ F +
Sbjct: 409 PDTLKNGFKKPLEKQKDPSEKSVHEGDSSSEKIIENPNIQRVSSQGCLQSHADRGSFPKE 468
Query: 59 K-QKPEDGGEKEELPAKRKAEKDDGKSVRSSPLK 91
K +KP G+K A E++ K + LK
Sbjct: 469 KSKKPNKKGKKTRTTAGGNREENIQKEKTAFSLK 502
>ZFIN|ZDB-GENE-040824-3 [details] [associations]
symbol:rfc4 "replication factor C (activator 1) 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-040824-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0060041 GO:GO:0017111 KO:K10755
eggNOG:COG0470 SUPFAM:SSF48019 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4Q58PN
EMBL:AY648805 IPI:IPI00506924 RefSeq:NP_999902.2 UniGene:Dr.77554
ProteinModelPortal:Q6DRF4 STRING:Q6DRF4 PRIDE:Q6DRF4 GeneID:406435
KEGG:dre:406435 NextBio:20818031 ArrayExpress:Q6DRF4 Bgee:Q6DRF4
Uniprot:Q6DRF4
Length = 358
Score = 103 (41.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 45/197 (22%), Positives = 81/197 (41%)
Query: 389 KKQNDASAEKAAILSGSPGMGKT-TAAKLVCQMLG-----FQAIEVNASDSRGKADAKIS 442
KK + + + G PG GKT T ++ G + +E+NASD RG ++
Sbjct: 58 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPDLYRQRVLELNASDERG---IQVV 114
Query: 443 KGIGGSNANSIKELVSNEALSANMD-RSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXX 501
+ +K D ++ P ++I+DE D M++ + +
Sbjct: 115 R-------EKVKRFAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAAQAALR--RTMEKE 165
Query: 502 XXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK-RLMQIANAEGLEVNEIALEE 560
+ S+ ++ L + CS RF KP ++ + R+++I E L+ ++
Sbjct: 166 SRTTRFCLICNYVSRIIEPLTSRCSKFRF-KPLANDVQQERILEICRKENLKYTTEGVDA 224
Query: 561 LADRVNGDIRMAINQLQ 577
L GD+R AI LQ
Sbjct: 225 LVRVSEGDLRKAITFLQ 241
Score = 68 (29.0 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 330 SPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQL 368
S + G +Q ++ W EKYRPK +E+ +++V L
Sbjct: 19 SSSSSSGGEKKQRAVPWVEKYRPKCVDEVAFQEEVVAVL 57
>UNIPROTKB|E1BPL7 [details] [associations]
symbol:RAD17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042325 "regulation of phosphorylation" evidence=IEA]
[GO:0008156 "negative regulation of DNA replication" evidence=IEA]
[GO:0007093 "mitotic cell cycle checkpoint" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000781 "chromosome,
telomeric region" evidence=IEA] [GO:0000077 "DNA damage checkpoint"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR003593 InterPro:IPR004582
InterPro:IPR018324 SMART:SM00382 GO:GO:0005524 GO:GO:0005634
GO:GO:0000077 GO:GO:0042325 GO:GO:0006281 GO:GO:0017111
GO:GO:0007093 GO:GO:0000781 GO:GO:0008156 PANTHER:PTHR12172
OMA:NYIDFFM TIGRFAMs:TIGR00602 GeneTree:ENSGT00440000039046
EMBL:DAAA02050051 IPI:IPI00904146 Ensembl:ENSBTAT00000002682
Uniprot:E1BPL7
Length = 681
Score = 113 (44.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 31/125 (24%), Positives = 60/125 (48%)
Query: 304 KKSPQNIEAKSTSAPKAP-IERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQ 362
KK P +E+ A K + K + K + + ++ W +KY+P+T +E+ ++
Sbjct: 50 KKVPSTLESSRFPASKGGNLSSSKQICGLENSK-EYLSENE-PWVDKYKPETQHELAVHK 107
Query: 363 QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422
+ ++++ TWL + L+ K+ G +++G PG GKTT K++ + G
Sbjct: 108 KKIEEVETWL---KAEVLERQPKQGGS---------ILLITGPPGCGKTTTIKILAKEHG 155
Query: 423 FQAIE 427
Q E
Sbjct: 156 IQVQE 160
Score = 66 (28.3 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 515 SQKL---KSLVNYC--SDLRFRKPRKQEIAKRLMQI----ANAEGLEV--NEIALEELAD 563
SQ+L K + C S++ F P I + ++I AN G ++ ++ +LE L
Sbjct: 267 SQRLLFPKEIQEECAISNISFN-PVAPTIMMKFLRIVTVEANKNGGKIVPDKTSLEFLCQ 325
Query: 564 RVNGDIRMAINQLQYMS 580
+GDIR AIN LQ+ S
Sbjct: 326 GCSGDIRSAINSLQFSS 342
Score = 41 (19.5 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 624 DERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGD 675
+E +++S +L L + +NY+++ D++ R S A+ +S GD
Sbjct: 435 EEVVEMSHMPGELFNLYLHQNYVDFFTEV---DDLVRASEFLSFADILS-GD 482
>UNIPROTKB|E7EXA6 [details] [associations]
symbol:CHTF18 "Chromosome transmission fidelity protein 18
homolog" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0017111
EMBL:AL031033 HGNC:HGNC:18435 IPI:IPI00178203
ProteinModelPortal:E7EXA6 SMR:E7EXA6 PRIDE:E7EXA6
Ensembl:ENST00000317063 OMA:TMLAYNL PhylomeDB:E7EXA6
ArrayExpress:E7EXA6 Bgee:E7EXA6 Uniprot:E7EXA6
Length = 1184
Score = 132 (51.5 bits), Expect = 0.00012, P = 0.00012
Identities = 64/260 (24%), Positives = 105/260 (40%)
Query: 371 WLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
W +H E+ L+ + G + +K A+L G PG+GKTT A ++ + G+ +E+NA
Sbjct: 539 WKSH--EQVLEEMLEA-GLDPSQRPKQKVALLCGPPGLGKTTLAHVIARHAGYSVVEMNA 595
Query: 431 SDSRG--------KADAKISK--GIGGS-NANSIKELVSNEALSANMDRS----KHPKTV 475
SD R +A ++ G GG N I E+ + N+ S K P+ V
Sbjct: 596 SDDRSPEVFRTRIEAATQMESVLGAGGKPNCLVIDEIDGAPVAAINVLLSILNRKGPQEV 655
Query: 476 LIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRK 535
G + GG ND+++ L+ L L F
Sbjct: 656 ----GPQGPAVPSGGG-RRRRAEGGLLMRPIICICNDQFAPSLRQLKQQAFLLHFPPTLP 710
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM-SLSLSVIKYDDIRQR 594
+ +RL EG+ + L L ++ + DIR IN LQ++ S + D+ Q
Sbjct: 711 SRLVQRLQ-----EGMRADPGVLAALCEKTDNDIRACINTLQFLYSRGQRELSVRDV-QA 764
Query: 595 LLSSAKDEDISPFTAVDKLF 614
KD+ F+ ++F
Sbjct: 765 TRVGLKDQRRGLFSVWQEVF 784
>UNIPROTKB|E1BCE1 [details] [associations]
symbol:ATAD5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 CTD:79915 OMA:LDVYNAV
GeneTree:ENSGT00670000098003 EMBL:DAAA02048524 IPI:IPI00702968
RefSeq:NP_001193418.1 UniGene:Bt.53428 PRIDE:E1BCE1
Ensembl:ENSBTAT00000024464 GeneID:513059 KEGG:bta:513059
NextBio:20870685 Uniprot:E1BCE1
Length = 1847
Score = 124 (48.7 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF-LDTGTKRNGK---KQNDA 394
+ WTEKY+P+ +E++GN+ +K+LH+WL W + L+ G GK KQ D+
Sbjct: 1052 MLWTEKYQPQNSSELIGNELAIKKLHSWLKDWKRRAELEEGQNLKGKRDEKQEDS 1106
Score = 59 (25.8 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 20/89 (22%), Positives = 40/89 (44%)
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESK-KSVEKVAASLPKKSPQNIEAKS 314
+S++ + L TED + + + P+K + + K + + V K+P+N+ K
Sbjct: 731 RSSRHQTLPERSETEDSVIIISSSPPPVKHPEKNQKKLQCLNDVLGKKHNKAPKNVPGKV 790
Query: 315 TSAPKAPIERMKTVASPAKRKGQNIQQSS 343
AP + + A PA ++ Q +S
Sbjct: 791 KVAPLFLTRKTQKTADPALGFDESSQDAS 819
Score = 50 (22.7 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 39/193 (20%), Positives = 68/193 (35%)
Query: 442 SKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXX 501
+K +N+N +KE + E +R K+ ++++ +EVD + D G + +
Sbjct: 1275 TKSTNTTNSN-VKEFGAEEP-----NR-KNATSLILFEEVDVIFEEDAGFLNAIKTFMAT 1327
Query: 502 XXXXXXXXXNDRYSQKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEE 560
+D + + C ++ F P +A L I E +
Sbjct: 1328 TKRPVILTTSD---PTFSLMFDGCFEEINFNTPSLLNVASYLQMICLTENFRTDVKDFVT 1384
Query: 561 LADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK 620
L DIR +I LQ+ S + + R L A ++ P + D N K
Sbjct: 1385 LLTANTCDIRKSILYLQFWIRSGG--GFLEERPLSLCRANSRNVPPVCSEDDPDSKNNPK 1442
Query: 621 LRMDERIDLSMSD 633
DL D
Sbjct: 1443 NTKRNPTDLPKCD 1455
>TAIR|locus:2180315 [details] [associations]
symbol:EMB2775 "EMBRYO DEFECTIVE 2775" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
HOGENOM:HOG000224153 OMA:TRIMCLL HSSP:Q8U4J3 EMBL:AY074381
EMBL:AY091236 IPI:IPI00528406 RefSeq:NP_198126.1 UniGene:At.19785
ProteinModelPortal:Q8VXX4 SMR:Q8VXX4 STRING:Q8VXX4 PaxDb:Q8VXX4
PRIDE:Q8VXX4 EnsemblPlants:AT5G27740.1 GeneID:832836
KEGG:ath:AT5G27740 TAIR:At5g27740 InParanoid:Q8VXX4
PhylomeDB:Q8VXX4 ProtClustDB:CLSN2687133 ArrayExpress:Q8VXX4
Genevestigator:Q8VXX4 Uniprot:Q8VXX4
Length = 354
Score = 123 (48.4 bits), Expect = 0.00021, P = 0.00021
Identities = 55/247 (22%), Positives = 108/247 (43%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN-EKFLDTGTKRNGKKQ---------ND 393
+ W +KYRPK+ ++++ ++ + ++L ++ + L G +GKK
Sbjct: 1 MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60
Query: 394 ASAEKAAILSGS--PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNAN 451
ASAEK + + + G T + + +E+ SD+ G D I + I
Sbjct: 61 ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDA-GFQDRYIVQEI------ 113
Query: 452 SIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIA-DLXXXXXXXXXXXXXXX 510
IKE+ N + + K VL+++EVD +S + + +
Sbjct: 114 -IKEMAKNRPIDT---KGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNS 169
Query: 511 NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570
+ + ++ +KS C ++R P ++EI K L +A E L++ + +A++ N +R
Sbjct: 170 SSKVTEAIKSR---CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLR 226
Query: 571 MAINQLQ 577
AI L+
Sbjct: 227 RAILSLE 233
>UNIPROTKB|E2RCC4 [details] [associations]
symbol:ATAD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 OMA:LDVYNAV
GeneTree:ENSGT00670000098003 EMBL:AAEX03006644 EMBL:AAEX03006645
Ensembl:ENSCAFT00000029357 Uniprot:E2RCC4
Length = 1883
Score = 126 (49.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 330 SPAKRKG-QNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNG 388
SP++R + + WTEKY+P+ NE++GN+ +K+LH+WL W ++ + ++N
Sbjct: 1078 SPSERSPIPDSGTEDMLWTEKYQPQNSNELIGNELAIKKLHSWLKDWKKR-AELEERQNL 1136
Query: 389 KKQNDASAE 397
K + D E
Sbjct: 1137 KGKKDEKQE 1145
Score = 58 (25.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 27/131 (20%), Positives = 48/131 (36%)
Query: 449 NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXX 508
+ N+IK V A K+ ++++ +EVD + D G + +
Sbjct: 1317 STNTIKSNVKE--FGAEEPSRKNATSLILFEEVDVIFEEDAGFLNAIKTFMATTKRPVIL 1374
Query: 509 XXNDRYSQKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567
+D + + C ++ F P + +A L I AE + L
Sbjct: 1375 TTSD---PTFSLMFDGCFEEINFSTPSLRNVASYLQMICLAENFRTDVKDFVTLLTANTC 1431
Query: 568 DIRMAINQLQY 578
DIR +I LQ+
Sbjct: 1432 DIRKSILYLQF 1442
>GENEDB_PFALCIPARUM|PFB0840w [details] [associations]
symbol:PFB0840w "replication factor C, subunit
2" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 108 (43.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 54/222 (24%), Positives = 96/222 (43%)
Query: 401 ILSGSPGMGKTTAAK-LVCQMLGFQAI-----EVNASDSRGKADAKISKGIGGSNANSIK 454
I G PG GKT+A L ++ G + I E+NASD RG + + I SI
Sbjct: 41 IFHGPPGTGKTSAINALAHELFGKENISERVLELNASDDRGIN--VVREKIKAYTRISIS 98
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRY 514
+ N+ S + K V ++DE D M+ + + + Y
Sbjct: 99 K---NKIHSETKEVLPSWKLV-VLDEADMMTEDAQSALRRIIEIYSNVTRFILIC---NY 151
Query: 515 SQKLKS-LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
K+ + + CS RF+ ++L+ I E +++ + ALE++ + GD+R A+
Sbjct: 152 IHKISDPIFSRCSCYRFQSIPINIKKEKLLYICQNENIDIVDDALEKIIETTEGDLRRAV 211
Query: 574 NQLQYMS-----------LSLSVIKYDDIRQRLLSSAKDEDI 604
+ LQ S L +S + D+I +++ + K +D+
Sbjct: 212 SILQLCSCINTKITLNSVLDVSGLPSDNIVYKIIDACKMKDL 253
Score = 58 (25.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQL 368
++ W EKYRPK ++IV V L
Sbjct: 3 NIPWVEKYRPKRLDDIVHQNNAVMML 28
>UNIPROTKB|O96260 [details] [associations]
symbol:PFB0840w "Replication factor C, subunit 2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 108 (43.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 54/222 (24%), Positives = 96/222 (43%)
Query: 401 ILSGSPGMGKTTAAK-LVCQMLGFQAI-----EVNASDSRGKADAKISKGIGGSNANSIK 454
I G PG GKT+A L ++ G + I E+NASD RG + + I SI
Sbjct: 41 IFHGPPGTGKTSAINALAHELFGKENISERVLELNASDDRGIN--VVREKIKAYTRISIS 98
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRY 514
+ N+ S + K V ++DE D M+ + + + Y
Sbjct: 99 K---NKIHSETKEVLPSWKLV-VLDEADMMTEDAQSALRRIIEIYSNVTRFILIC---NY 151
Query: 515 SQKLKS-LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
K+ + + CS RF+ ++L+ I E +++ + ALE++ + GD+R A+
Sbjct: 152 IHKISDPIFSRCSCYRFQSIPINIKKEKLLYICQNENIDIVDDALEKIIETTEGDLRRAV 211
Query: 574 NQLQYMS-----------LSLSVIKYDDIRQRLLSSAKDEDI 604
+ LQ S L +S + D+I +++ + K +D+
Sbjct: 212 SILQLCSCINTKITLNSVLDVSGLPSDNIVYKIIDACKMKDL 253
Score = 58 (25.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQL 368
++ W EKYRPK ++IV V L
Sbjct: 3 NIPWVEKYRPKRLDDIVHQNNAVMML 28
>UNIPROTKB|F1NTX9 [details] [associations]
symbol:RAD17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
InterPro:IPR004582 InterPro:IPR018324 GO:GO:0005634 GO:GO:0006281
GO:GO:0007049 PANTHER:PTHR12172 TIGRFAMs:TIGR00602
GeneTree:ENSGT00440000039046 EMBL:AADN02074379 IPI:IPI00819456
Ensembl:ENSGALT00000037640 ArrayExpress:F1NTX9 Uniprot:F1NTX9
Length = 693
Score = 103 (41.3 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 31/130 (23%), Positives = 58/130 (44%)
Query: 324 RMKTVASPAKRKGQNIQQ-SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDT 382
++ +V P + QN Q W +KY+P+T N++ ++ ++++ TWL
Sbjct: 74 KLSSVDLPCSKSRQNWDQPQDEPWVDKYKPETQNDLAVQKKKIEEVETWL---KMHIFQR 130
Query: 383 GTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKIS 442
K++G +L+G G GKT +++ + LG Q + S +
Sbjct: 131 QPKQDGC---------VLLLTGPAGCGKTATVQILAKDLGVQVQDWTNPISLDFTKEDL- 180
Query: 443 KGIGGSNANS 452
+ I G N+NS
Sbjct: 181 RNISGHNSNS 190
Score = 72 (30.4 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 33/111 (29%), Positives = 50/111 (45%)
Query: 511 NDRYSQKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAEG---LEVN----EIALEELA 562
N R + L C S + F+ + K L +IA AE E N +LE L
Sbjct: 273 NQRLLFPKEILEELCISIISFKPVAPTNMMKVLNRIATAEANMNREKNYAPDRASLELLC 332
Query: 563 DRVNGDIRMAINQLQYMSLSLSVIKYDD-IRQRLLSSAKDEDISPFTAVDK 612
+GDIR AIN LQ+ S+ ++ D R++ S+ K E + ++ K
Sbjct: 333 KGCSGDIRSAINSLQFFSMKDCSLEKDFWSRKKRSSTLKSETAAAMCSLRK 383
>UNIPROTKB|F1NC53 [details] [associations]
symbol:RAD17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006281 "DNA repair" evidence=IEA] [GO:0000077 "DNA
damage checkpoint" evidence=IEA] [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007093 "mitotic cell cycle checkpoint" evidence=IEA]
[GO:0008156 "negative regulation of DNA replication" evidence=IEA]
[GO:0042325 "regulation of phosphorylation" evidence=IEA]
InterPro:IPR004582 InterPro:IPR018324 GO:GO:0005634 GO:GO:0000077
GO:GO:0042325 GO:GO:0006281 GO:GO:0007093 GO:GO:0000781
GO:GO:0008156 PANTHER:PTHR12172 OMA:NYIDFFM TIGRFAMs:TIGR00602
GeneTree:ENSGT00440000039046 EMBL:AADN02074379 IPI:IPI00583330
Ensembl:ENSGALT00000025104 ArrayExpress:F1NC53 Uniprot:F1NC53
Length = 694
Score = 103 (41.3 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 31/130 (23%), Positives = 58/130 (44%)
Query: 324 RMKTVASPAKRKGQNIQQ-SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDT 382
++ +V P + QN Q W +KY+P+T N++ ++ ++++ TWL
Sbjct: 75 KLSSVDLPCSKSRQNWDQPQDEPWVDKYKPETQNDLAVQKKKIEEVETWL---KMHIFQR 131
Query: 383 GTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKIS 442
K++G +L+G G GKT +++ + LG Q + S +
Sbjct: 132 QPKQDGC---------VLLLTGPAGCGKTATVQILAKDLGVQVQDWTNPISLDFTKEDL- 181
Query: 443 KGIGGSNANS 452
+ I G N+NS
Sbjct: 182 RNISGHNSNS 191
Score = 72 (30.4 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 33/111 (29%), Positives = 50/111 (45%)
Query: 511 NDRYSQKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAEG---LEVN----EIALEELA 562
N R + L C S + F+ + K L +IA AE E N +LE L
Sbjct: 274 NQRLLFPKEILEELCISIISFKPVAPTNMMKVLNRIATAEANMNREKNYAPDRASLELLC 333
Query: 563 DRVNGDIRMAINQLQYMSLSLSVIKYDD-IRQRLLSSAKDEDISPFTAVDK 612
+GDIR AIN LQ+ S+ ++ D R++ S+ K E + ++ K
Sbjct: 334 KGCSGDIRSAINSLQFFSMKDCSLEKDFWSRKKRSSTLKSETAAAMCSLRK 384
>UNIPROTKB|F1PFW9 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 GeneTree:ENSGT00550000075029
OMA:TMLAYNL EMBL:AAEX03004670 Ensembl:ENSCAFT00000031175
Uniprot:F1PFW9
Length = 1140
Score = 131 (51.2 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 54/199 (27%), Positives = 83/199 (41%)
Query: 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG--------KADAKISK--GIG 446
+K A+L G PG+GKTT A ++ + G+ +E+NASD R +A ++ G G
Sbjct: 524 QKVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEAFRTCIEAATQMESVLGAG 583
Query: 447 GS-NANSIKELVSNEALSAN-----MDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXX 500
G N I E+ + N +DR K P+ E G GG
Sbjct: 584 GKPNCLVIDEIDGAPVAAINVLLNVLDR-KGPQDA----ESGGPGVPTSGGRRH-RADGG 637
Query: 501 XXXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEE 560
ND++ L+ L L F + +RL EG++ + AL
Sbjct: 638 LLMRPIICICNDQFVPSLRQLRQQAFLLHFPPILSSRLTQRLQ-----EGMQADPGALAA 692
Query: 561 LADRVNGDIRMAINQLQYM 579
L ++ + DIR IN LQ++
Sbjct: 693 LCEKTDNDIRACINTLQFL 711
Score = 46 (21.3 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 13/69 (18%), Positives = 30/69 (43%)
Query: 323 ERMKTVASPAKRKGQNIQQSS-LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLD 381
E ++ + +P + + S W +++ P+ E++ + + L WL W+
Sbjct: 415 EEVQPLGAPEEELANSPDGSQHCLWVDEFAPQYYTELLSDDFTNRCLLKWLKLWDPVVF- 473
Query: 382 TGTKRNGKK 390
G +R +K
Sbjct: 474 -GRERPARK 481
>UNIPROTKB|I3L290 [details] [associations]
symbol:RAD17 "Cell cycle checkpoint protein RAD17"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR004582 InterPro:IPR018324
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0006281
GO:GO:0007049 GO:GO:0017111 PANTHER:PTHR12172 TIGRFAMs:TIGR00602
EMBL:AC145145 SMR:I3L290 Ensembl:ENST00000572356
Ensembl:ENST00000575406 Uniprot:I3L290
Length = 681
Score = 105 (42.0 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 29/125 (23%), Positives = 60/125 (48%)
Query: 304 KKSPQNIEAKSTSAPK-APIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQ 362
K P +E+ A K + ++ + K + + ++ W +KY+P+T +E+ ++
Sbjct: 50 KNGPSTLESSRFPARKRGNLSSLEQIYGLENSK-EYLSENE-PWVDKYKPETQHELAVHK 107
Query: 363 QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422
+ ++++ TWL + L+ K+ G +++G PG GKTT K++ + G
Sbjct: 108 KKIEEVETWL---KAQVLERQPKQGGS---------ILLITGPPGCGKTTTLKILSKEHG 155
Query: 423 FQAIE 427
Q E
Sbjct: 156 IQVQE 160
Score = 63 (27.2 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 541 RLMQI-ANAEGLEV---NEIALEELADRVNGDIRMAINQLQYMS 580
R++ I AN G ++ ++ +LE L +GDIR AIN LQ+ S
Sbjct: 301 RIVTIEANKNGGKITVPDKTSLELLCQGCSGDIRSAINSLQFSS 344
Score = 47 (21.6 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 624 DERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGD 675
+E +++S DL L + +NYI++ D++ R S A+ +S GD
Sbjct: 436 EEVVEMSHMPGDLFNLYLHQNYIDFFMEI---DDIVRASEFLSFADILS-GD 483
>UNIPROTKB|O75943 [details] [associations]
symbol:RAD17 "Cell cycle checkpoint protein RAD17"
species:9606 "Homo sapiens" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IMP] [GO:0007093 "mitotic cell cycle
checkpoint" evidence=IMP] [GO:0042325 "regulation of
phosphorylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0008156 "negative regulation of DNA replication"
evidence=IMP] [GO:0000076 "DNA replication checkpoint"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006260 "DNA
replication" evidence=TAS] [GO:0000781 "chromosome, telomeric
region" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR003593
InterPro:IPR004582 InterPro:IPR018324 SMART:SM00382 GO:GO:0005524
GO:GO:0000077 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0042325
GO:GO:0006260 GO:GO:0006281 GO:GO:0017111 GO:GO:0007093
eggNOG:COG0470 GO:GO:0008156 GO:GO:0000076 EMBL:CH471137 KO:K06662
PANTHER:PTHR12172 EMBL:AF076838 EMBL:AJ004977 EMBL:AF112263
EMBL:AF085736 EMBL:AJ001642 EMBL:AJ131296 EMBL:AJ131297
EMBL:AJ131298 EMBL:AJ131299 EMBL:AJ131300 EMBL:AJ131301
EMBL:AJ131302 EMBL:AJ131303 EMBL:AJ131304 EMBL:AJ131305
EMBL:AJ131306 EMBL:AJ131307 EMBL:AJ131308 EMBL:AF017748
EMBL:AF126424 EMBL:AF098533 EMBL:AF098534 EMBL:AL122068
EMBL:AK292487 EMBL:BX537441 EMBL:AY612854 EMBL:BC032304
IPI:IPI00107491 IPI:IPI00107492 IPI:IPI00334267 IPI:IPI00395702
PIR:T34548 RefSeq:NP_002864.1 RefSeq:NP_579916.1 RefSeq:NP_579917.1
RefSeq:NP_579918.1 RefSeq:NP_579919.1 RefSeq:NP_579920.1
RefSeq:NP_579921.1 RefSeq:NP_579922.1 UniGene:Hs.16184
ProteinModelPortal:O75943 SMR:O75943 DIP:DIP-24254N DIP:DIP-34896N
IntAct:O75943 STRING:O75943 PhosphoSite:O75943 PRIDE:O75943
DNASU:5884 Ensembl:ENST00000282891 Ensembl:ENST00000305138
Ensembl:ENST00000345306 Ensembl:ENST00000354312
Ensembl:ENST00000354868 Ensembl:ENST00000358030
Ensembl:ENST00000361732 Ensembl:ENST00000380774
Ensembl:ENST00000509734 Ensembl:ENST00000521422 GeneID:5884
KEGG:hsa:5884 UCSC:uc003jwg.3 UCSC:uc003jwm.3 UCSC:uc003jwn.3
CTD:5884 GeneCards:GC05P068700 HGNC:HGNC:9807 HPA:CAB004551
HPA:HPA005448 MIM:603139 neXtProt:NX_O75943 PharmGKB:PA34167
HOVERGEN:HBG059834 InParanoid:O75943 OMA:NYIDFFM OrthoDB:EOG4229J6
PhylomeDB:O75943 GenomeRNAi:5884 NextBio:22866 ArrayExpress:O75943
Bgee:O75943 CleanEx:HS_RAD17 Genevestigator:O75943
GermOnline:ENSG00000152942 TIGRFAMs:TIGR00602 Uniprot:O75943
Length = 681
Score = 105 (42.0 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 29/125 (23%), Positives = 60/125 (48%)
Query: 304 KKSPQNIEAKSTSAPK-APIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQ 362
K P +E+ A K + ++ + K + + ++ W +KY+P+T +E+ ++
Sbjct: 50 KNGPSTLESSRFPARKRGNLSSLEQIYGLENSK-EYLSENE-PWVDKYKPETQHELAVHK 107
Query: 363 QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422
+ ++++ TWL + L+ K+ G +++G PG GKTT K++ + G
Sbjct: 108 KKIEEVETWL---KAQVLERQPKQGGS---------ILLITGPPGCGKTTTLKILSKEHG 155
Query: 423 FQAIE 427
Q E
Sbjct: 156 IQVQE 160
Score = 63 (27.2 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 541 RLMQI-ANAEGLEV---NEIALEELADRVNGDIRMAINQLQYMS 580
R++ I AN G ++ ++ +LE L +GDIR AIN LQ+ S
Sbjct: 301 RIVTIEANKNGGKITVPDKTSLELLCQGCSGDIRSAINSLQFSS 344
Score = 47 (21.6 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 624 DERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGD 675
+E +++S DL L + +NYI++ D++ R S A+ +S GD
Sbjct: 436 EEVVEMSHMPGDLFNLYLHQNYIDFFMEI---DDIVRASEFLSFADILS-GD 483
>UNIPROTKB|P09122 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0017111 GO:GO:0003887 EMBL:D26185
GO:GO:0009360 EMBL:X17014 EMBL:X06803 EMBL:X52144 PIR:I40469
PIR:S13786 RefSeq:NP_387900.2 ProteinModelPortal:P09122 SMR:P09122
IntAct:P09122 EnsemblBacteria:EBBACT00000003868 GeneID:936899
KEGG:bsu:BSU00190 PATRIC:18971499 GenoList:BSU00190 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563
BioCyc:BSUB:BSU00190-MONOMER SUPFAM:SSF48019 TIGRFAMs:TIGR02397
Uniprot:P09122
Length = 563
Score = 123 (48.4 bits), Expect = 0.00045, P = 0.00045
Identities = 58/220 (26%), Positives = 97/220 (44%)
Query: 382 TGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKI 441
T T +N Q S A + SG G GKT+AAK+ + + + V+ + A
Sbjct: 25 TKTLQNALLQKKFS--HAYLFSGPRGTGKTSAAKIFAKAVNCEHAPVDEPCNECAA---- 78
Query: 442 SKGIGGSNANSIKEL--VSNEALSANMD-RSK---HPKTVL----IMDEVDGMSAGDRGG 491
KGI + + + E+ SN + D R K P V I+DEV +S G
Sbjct: 79 CKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYIIDEVHMLSIGAFNA 138
Query: 492 IADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGL 551
+ + + L ++++ C F++ Q I R+ +I +AE L
Sbjct: 139 LLK-TLEEPPEHCIFILATTEPHKIPL-TIISRCQRFDFKRITSQAIVGRMNKIVDAEQL 196
Query: 552 EVNEIALEELADRVNGDIRMAINQL-QYMSLSLSVIKYDD 590
+V E +LE +A +G +R A++ L Q +S S ++K +D
Sbjct: 197 QVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVED 236
>SGD|S000003829 [details] [associations]
symbol:RFC2 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031391 "Elg1 RFC-like complex"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006272 "leading strand elongation" evidence=IDA] [GO:0017076
"purine nucleotide binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0007062 "sister chromatid cohesion"
evidence=IPI] [GO:0003689 "DNA clamp loader activity" evidence=IDA]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000003829
GO:GO:0005524 GO:GO:0005634 EMBL:BK006943 GO:GO:0003677
GO:GO:0006298 EMBL:L47993 GO:GO:0017111 GO:GO:0017076 KO:K06883
RefSeq:NP_012602.3 GeneID:853531 KEGG:sce:YJR068W KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
RefSeq:NP_012606.3 GeneID:853535 KEGG:sce:YJR072C PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224154
OrthoDB:EOG4ZCXDF EMBL:D28499 EMBL:U26028 EMBL:Z49568 EMBL:AY557920
PIR:S45531 ProteinModelPortal:P40348 SMR:P40348 DIP:DIP-2528N
IntAct:P40348 MINT:MINT-480404 STRING:P40348 PaxDb:P40348
PeptideAtlas:P40348 EnsemblFungi:YJR068W CYGD:YJR068w
GeneTree:ENSGT00550000074917 OMA:SMTADAQ EvolutionaryTrace:P40348
NextBio:974230 Genevestigator:P40348 GermOnline:YJR068W
Uniprot:P40348
Length = 353
Score = 120 (47.3 bits), Expect = 0.00045, P = 0.00045
Identities = 58/237 (24%), Positives = 98/237 (41%)
Query: 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGK----KQNDASAEKAAILS-GSPGMGK 410
+++ Q L +Q W+ + K LD T ++ K+ SA +L G PG GK
Sbjct: 14 SKLAAEQSLAQQ--PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGK 71
Query: 411 T-TAAKLVCQMLG-----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA 464
T T L ++ G + +E+NASD RG IS I + L ++
Sbjct: 72 TSTILALTKELYGPDLMKSRILELNASDERG-----IS--IVREKVKNFARLTVSKPSKH 124
Query: 465 NMDRSKHPK-TVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVN 523
+++ P ++I+DE D M+A + + + ++ + L +
Sbjct: 125 DLENYPCPPYKIIILDEADSMTADAQSALR--RTMETYSGVTRFCLICNYVTRIIDPLAS 182
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
CS RF+ RL I+ E ++ ++ LE + D GD+R I LQ S
Sbjct: 183 RCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSAS 239
>UNIPROTKB|F1SFI3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:CU633961 Ensembl:ENSSSCT00000012916 Uniprot:F1SFI3
Length = 366
Score = 120 (47.3 bits), Expect = 0.00048, P = 0.00048
Identities = 47/196 (23%), Positives = 89/196 (45%)
Query: 389 KKQNDASAEKAAILSGSPGMGKTT----AAKLVC--QMLGFQAIEVNASDSRGKADAKIS 442
KK + + + G PG GKT+ AA+ + ++ + +E+NASD RG ++
Sbjct: 63 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERG---IQVV 119
Query: 443 KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXX 502
+ + +L + + S + P ++I+DE D M++ + +
Sbjct: 120 R----EKVKNFAQLTVSGSRSEISGKPCPPFKIVILDEADSMTSAAQAALR--RTMEKES 173
Query: 503 XXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK-RLMQIANAEGLEVNEIALEEL 561
+ S+ ++ L + CS RF KP +I + RL+ IA+ E +++++ + L
Sbjct: 174 KTTRFCLICNYVSRIIEPLTSRCSKFRF-KPLSDKIQQQRLLDIADKEHVKISDEGIAYL 232
Query: 562 ADRVNGDIRMAINQLQ 577
GD+R AI LQ
Sbjct: 233 VKVSEGDLRKAITFLQ 248
>UNIPROTKB|Q9KTD1 [details] [associations]
symbol:ligA "DNA ligase" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0003911 "DNA ligase (NAD+) activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006266 "DNA ligation" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
HAMAP:MF_01588 InterPro:IPR001679 InterPro:IPR003583
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119
Pfam:PF03120 PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00278 SMART:SM00532 InterPro:IPR001357 Pfam:PF00533
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 KO:K01972 GO:GO:0003911 PANTHER:PTHR11107:SF5
TIGRFAMs:TIGR00575 HSSP:O87703 OMA:ENVRTIR ProtClustDB:PRK07956
PIR:F82258 RefSeq:NP_230618.1 ProteinModelPortal:Q9KTD1 SMR:Q9KTD1
GeneID:2614224 KEGG:vch:VC0971 PATRIC:20081040 Uniprot:Q9KTD1
Length = 669
Score = 123 (48.4 bits), Expect = 0.00057, P = 0.00057
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 198 PEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKS 257
P L G V++G+ L R +A+ ++ G +VTGSVSK T+ + E AG+K
Sbjct: 590 PVAVDSALAGKIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDMVFAGE-AAGSKL 648
Query: 258 TKAKELGTPFLTEDGLFDMIR 278
KA ELG E L + ++
Sbjct: 649 AKATELGIQVFDEQALIEFLK 669
>TIGR_CMR|VC_0971 [details] [associations]
symbol:VC_0971 "DNA ligase" species:686 "Vibrio cholerae O1
biovar El Tor" [GO:0003911 "DNA ligase (NAD+) activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006266 "DNA ligation" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
HAMAP:MF_01588 InterPro:IPR001679 InterPro:IPR003583
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119
Pfam:PF03120 PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00278 SMART:SM00532 InterPro:IPR001357 Pfam:PF00533
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 KO:K01972 GO:GO:0003911 PANTHER:PTHR11107:SF5
TIGRFAMs:TIGR00575 HSSP:O87703 OMA:ENVRTIR ProtClustDB:PRK07956
PIR:F82258 RefSeq:NP_230618.1 ProteinModelPortal:Q9KTD1 SMR:Q9KTD1
GeneID:2614224 KEGG:vch:VC0971 PATRIC:20081040 Uniprot:Q9KTD1
Length = 669
Score = 123 (48.4 bits), Expect = 0.00057, P = 0.00057
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 198 PEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKS 257
P L G V++G+ L R +A+ ++ G +VTGSVSK T+ + E AG+K
Sbjct: 590 PVAVDSALAGKIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDMVFAGE-AAGSKL 648
Query: 258 TKAKELGTPFLTEDGLFDMIR 278
KA ELG E L + ++
Sbjct: 649 AKATELGIQVFDEQALIEFLK 669
>FB|FBgn0030871 [details] [associations]
symbol:CG8142 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031122 "cytoplasmic microtubule organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0003677
GO:GO:0006260 EMBL:AE014298 GO:GO:0046331 GO:GO:0017111
GO:GO:0031122 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
GeneTree:ENSGT00550000074917 HSSP:Q8U4J3 EMBL:AY069598
RefSeq:NP_573245.1 UniGene:Dm.2050 SMR:Q9VX15 IntAct:Q9VX15
MINT:MINT-847740 STRING:Q9VX15 EnsemblMetazoa:FBtr0074472
GeneID:32763 KEGG:dme:Dmel_CG8142 UCSC:CG8142-RA
FlyBase:FBgn0030871 InParanoid:Q9VX15 OMA:VGQMMEQ OrthoDB:EOG4Q2BXJ
GenomeRNAi:32763 NextBio:780237 Uniprot:Q9VX15
Length = 353
Score = 119 (46.9 bits), Expect = 0.00058, P = 0.00058
Identities = 46/183 (25%), Positives = 77/183 (42%)
Query: 401 ILSGSPGMGKTT---AA--KLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKE 455
+L G PG GKT+ AA ++ M + +E+NASD RG + + IK
Sbjct: 67 LLYGPPGTGKTSTILAASRQIFGDMFKDRILELNASDERG---INVVR-------TKIKN 116
Query: 456 LVSNEALSANMDRSKHPK-TVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRY 514
A S D P ++I+DE D M+ + + +
Sbjct: 117 FSQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQSALR--RTMEKESRSTRFCLICNYV 174
Query: 515 SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAIN 574
S+ + + + CS RF+ + ++ RL I EG+++ + A + + GD+R AI
Sbjct: 175 SRIIVPITSRCSKFRFKALGEDKVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAIT 234
Query: 575 QLQ 577
LQ
Sbjct: 235 TLQ 237
>UNIPROTKB|I3LTZ5 [details] [associations]
symbol:LOC100624938 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0007049 "cell cycle" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004582 InterPro:IPR018324 GO:GO:0005634 GO:GO:0006281
GO:GO:0007049 PANTHER:PTHR12172 OMA:NYIDFFM TIGRFAMs:TIGR00602
GeneTree:ENSGT00440000039046 Ensembl:ENSSSCT00000030759
Uniprot:I3LTZ5
Length = 596
Score = 105 (42.0 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 29/125 (23%), Positives = 61/125 (48%)
Query: 304 KKSPQNIEAK-STSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQ 362
KK P +E++ S + + + K + S K + + ++ W +KY+P+T +E+ ++
Sbjct: 50 KKVPSTLESRRSPTRKRGNLSSSKQIYSLENSK-EYVSENE-PWVDKYKPETQHELAVHK 107
Query: 363 QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422
+ ++++ TWL + L+ + G +++G PG GKT K++ + G
Sbjct: 108 KKIEEVETWL---KVEVLERQPTQGGS---------ILLITGPPGCGKTATIKILSKEHG 155
Query: 423 FQAIE 427
Q E
Sbjct: 156 IQVQE 160
Score = 61 (26.5 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 546 ANAEGLEV---NEIALEELADRVNGDIRMAINQLQYMS 580
AN G ++ ++ +LE L +GDIR AIN LQ+ S
Sbjct: 307 ANKNGGKIIVPDKTSLELLCQGCSGDIRSAINSLQFSS 344
Score = 44 (20.5 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 624 DERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGD 675
+E +++S DL L + +NY+++ D++ R S A+ +S GD
Sbjct: 437 EEVVEMSHMPGDLFNLYLHQNYVDFFMDV---DDLVRASEFLSFADILS-GD 484
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.130 0.363 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 790 722 0.00085 121 3 11 23 0.47 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 101
No. of states in DFA: 617 (66 KB)
Total size of DFA: 326 KB (2166 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 70.94u 0.09s 71.03t Elapsed: 00:00:55
Total cpu time: 70.97u 0.09s 71.06t Elapsed: 00:00:55
Start: Fri May 10 02:01:09 2013 End: Fri May 10 02:02:04 2013
WARNINGS ISSUED: 1