BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003873
(790 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449445013|ref|XP_004140268.1| PREDICTED: replication factor C subunit 1-like [Cucumis sativus]
Length = 981
Score = 1065 bits (2753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/802 (70%), Positives = 653/802 (81%), Gaps = 25/802 (3%)
Query: 4 DIRKWFLKPHSKDKDNATIPANTALSNLETTNS--EPGCGGHESMGRRKTSKYFATDKQK 61
DIRKWF+K H KD + + A A S+LE + S + G G ES GR+ TSKYFA++KQ+
Sbjct: 3 DIRKWFMKAHDKDNGSGSKKAKPAPSSLEKSASAGKTGPSGGESAGRQITSKYFASEKQE 62
Query: 62 PEDGGEKEELP-------------AKRKAEKDDGKSVRSSPLKKFHKADDDDDDFVPPSV 108
+D E E LP AKRK +K + +S ++SPLKK +K DD+DDD V S
Sbjct: 63 AKDAEETEVLPIIRKSPRDTKESPAKRKFQKYNEESPKASPLKKSNKVDDNDDDAVLSSS 122
Query: 109 KKNSVGATPSKKLKSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPA 168
KKN TP+KKLKSGSG+ + QK V+I+ ++E+ K T+S LK SGRGRGG+G+S A
Sbjct: 123 KKNMSEVTPNKKLKSGSGKGITQKPVEIEASDDEETKGTDSSLKPSGRGRGGKGSSAATI 182
Query: 169 VGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLI 228
GRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCL GLTFVISGTLDSLEREEAEDLI
Sbjct: 183 GGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLI 242
Query: 229 KRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQ 288
KRHGGRVTGSVSKKTNYLLCDEDI G KS+KAKELGT FLTEDGLFDMIRAS KA +
Sbjct: 243 KRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGK-KAPPR 301
Query: 289 AESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTE 348
+ KKSV K S KK+ Q ++AKS + + ASPAK+K + S+LTWTE
Sbjct: 302 QDPKKSVVKSEESPTKKNFQKVQAKSH-------KDLAAGASPAKQKSGTAEFSNLTWTE 354
Query: 349 KYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGM 408
KYRPK PN+I+GNQ LVKQLH WLAHWNE FLD G+K+ KK +D+ A+KA +L G PG+
Sbjct: 355 KYRPKVPNDIIGNQSLVKQLHDWLAHWNENFLDVGSKKKVKKASDSGAKKAVLLCGGPGI 414
Query: 409 GKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDR 468
GKTT+AKLV QMLGF+AIEVNASD+RGK+DAKI KGIGGSNANSIKEL+SNE+L M++
Sbjct: 415 GKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFKMNQ 474
Query: 469 SKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDL 528
KH KTVLIMDEVDGMSAGDRGG+ADLIASIK+SKIPIICICNDRYSQKLKSLVNYC L
Sbjct: 475 PKHHKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLIL 534
Query: 529 RFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKY 588
FRKP KQ++AKRL+Q+ANAEGL+VNEIALEELA+RVNGD+RMA+NQLQY+SLS+SVIKY
Sbjct: 535 SFRKPTKQQMAKRLVQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKY 594
Query: 589 DDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINY 648
DDIRQRLLSS KDEDISPFTAVDKLFGFN GKLRMDERIDLSMSD DLVPLLIQENYINY
Sbjct: 595 DDIRQRLLSSKKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINY 654
Query: 649 RPSSAGRDE--VKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMH 706
RPS+ +D+ +KR+ LIARAAESI+DGDI NVQIRR++QWQLSQSS +ASCIIPA+L+H
Sbjct: 655 RPSAVSKDDTGIKRMDLIARAAESIADGDIINVQIRRHRQWQLSQSSCVASCIIPASLLH 714
Query: 707 GQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSL 766
GQRETLEQ ERNFNRFG WLGKNST GKN+RLLEDLH H LASR+S GR+ LR++ +L
Sbjct: 715 GQRETLEQYERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTL 774
Query: 767 LLKQLTEPLRVLPKDELLRKLL 788
LK+LTEPL LPKDE ++ ++
Sbjct: 775 FLKRLTEPLHTLPKDEAVKTVV 796
>gi|449481177|ref|XP_004156105.1| PREDICTED: replication factor C subunit 1-like [Cucumis sativus]
Length = 942
Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/789 (70%), Positives = 645/789 (81%), Gaps = 25/789 (3%)
Query: 4 DIRKWFLKPHSKDKDNATIPANTALSNLETTNS--EPGCGGHESMGRRKTSKYFATDKQK 61
DIRKWF+K H KD + + A A S+LE + S + G G ES GR+ TSKYFA++KQ+
Sbjct: 3 DIRKWFMKAHDKDNGSGSKKAKPAPSSLEKSASAGKTGPSGGESAGRQITSKYFASEKQE 62
Query: 62 PEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKADDDDDDFVPPSVKKNSVGATPSKKL 121
+D E EE PAKRK +K + +S ++SPLKK +K DD+DDD V S KKN TP+KKL
Sbjct: 63 AKDAEETEESPAKRKFQKYNEESPKASPLKKSNKVDDNDDDAVLSSSKKNMSEVTPNKKL 122
Query: 122 KSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFM 181
KSGSG+ + QK V+I+ ++E+ K T+S LK SGRGRGG+G+S A GRGRGGGRGGFM
Sbjct: 123 KSGSGKGITQKPVEIEASDDEETKGTDSSLKPSGRGRGGKGSSAATIGGRGRGGGRGGFM 182
Query: 182 NFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSK 241
NFGERKDPPHKGEKEVPEGAPDCL GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSK
Sbjct: 183 NFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSK 242
Query: 242 KTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAAS 301
KTNYLLCDEDI G KS+KAKELGT FLTEDGLFDMIRAS KA + + KKSV K S
Sbjct: 243 KTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGK-KAPPRQDPKKSVVKSEES 301
Query: 302 LPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGN 361
KK+ Q ++AKS S + S+LTWTEKYRPK PN+I+GN
Sbjct: 302 PTKKNFQKVQAKSKSG--------------------TAEFSNLTWTEKYRPKVPNDIIGN 341
Query: 362 QQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421
Q LVKQLH WLAHWNE FLD G+K+ KK +D+ A+KA +L G PG+GKTT+AKLV QML
Sbjct: 342 QSLVKQLHDWLAHWNENFLDVGSKKKVKKASDSGAKKAVLLCGGPGIGKTTSAKLVSQML 401
Query: 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEV 481
GF+AIEVNASD+RGK+DAKI KGIGGSNANSIKEL+SNE+L M++ KH KTVLIMDEV
Sbjct: 402 GFEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFKMNQPKHHKTVLIMDEV 461
Query: 482 DGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
DGMSAGDRGG+ADLIASIK+SKIPIICICNDRYSQKLKSLVNYC L FRKP KQ++AKR
Sbjct: 462 DGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKR 521
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD 601
L+Q+ANAEGL+VNEIALEELA+RVNGD+RMA+NQLQY+SLS+SVIKYDDIRQRLLSS KD
Sbjct: 522 LVQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLSSKKD 581
Query: 602 EDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDE--VK 659
EDISPFTAVDKLFGFN GKLRMDERIDLSMSD DLVPLLIQENYINYRPS+ +D+ +K
Sbjct: 582 EDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAVSKDDTGIK 641
Query: 660 RLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNF 719
R+ LIARAAESI+DGDI NVQIRR++QWQLSQSS +ASCIIPA+L+HGQRETLEQ ERNF
Sbjct: 642 RMDLIARAAESIADGDIINVQIRRHRQWQLSQSSCVASCIIPASLLHGQRETLEQYERNF 701
Query: 720 NRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLP 779
NRFG WLGKNST GKN+RLLEDLH H LASR+S GR+ LR++ +L LK+LTEPL LP
Sbjct: 702 NRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTEPLHTLP 761
Query: 780 KDELLRKLL 788
KDE ++ ++
Sbjct: 762 KDEAVKTVV 770
>gi|296083902|emb|CBI24290.3| unnamed protein product [Vitis vinifera]
Length = 941
Score = 1029 bits (2660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/795 (70%), Positives = 630/795 (79%), Gaps = 43/795 (5%)
Query: 4 DIRKWFLKPHSKDKDNATIPA--------NTALSNLETTNSEPGCGGHESMGRRKTSKYF 55
DIRKWF+K H D N PA + S +P GG ES RRKTSKYF
Sbjct: 7 DIRKWFMKKHDNDNGNPLKPAKPEPKASQSGKPSPATVQQEKPVHGGQESSCRRKTSKYF 66
Query: 56 ATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKADDDDDDFVPPSVKKNSVGA 115
QKP+D E EELPAKRK +K +S+ PP
Sbjct: 67 ----QKPKDEKEMEELPAKRKTQKGTKESLN------------------PP--------- 95
Query: 116 TPSKKLKSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRGG 175
PSKK++ + DDE+ D K TE P+KS GRGRGGRGA PA GRGRGG
Sbjct: 96 -PSKKIRRVVDDDDDDFVLHKSDDEKVD-KDTEPPIKSGGRGRGGRGALVTPAGGRGRGG 153
Query: 176 GRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRV 235
GRGGFMNFGERKDPPHKGEKEVPEGA DCL GLTFVISGTLDSLEREEAEDLIKRHGGRV
Sbjct: 154 GRGGFMNFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRV 213
Query: 236 TGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSV 295
TGSVSKKTN+LLCDEDI G KS KAKELGT FLTEDGLFDMI AS KA A+ E KKS+
Sbjct: 214 TGSVSKKTNFLLCDEDIGGNKSAKAKELGTAFLTEDGLFDMICASNHAKAPARGEPKKSL 273
Query: 296 EKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTP 355
+KV + PKKSPQ +E K + +R A+ K Q I +SLTWTEKY+PK P
Sbjct: 274 DKVVLATPKKSPQKVEKKVDQVVNSSGKRTVLAATTPKHIYQTIGHASLTWTEKYKPKVP 333
Query: 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAK 415
N+I+GNQ LVKQLH WLAHWNE+FL TGTK GKKQND+ A+KA +LSG+PG+GKTT+AK
Sbjct: 334 NDIIGNQSLVKQLHEWLAHWNEQFLHTGTKGKGKKQNDSGAKKAVLLSGTPGIGKTTSAK 393
Query: 416 LVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTV 475
LV QMLGFQAIEVNASD+RGKA+AKI KGIGGSNANSIKELVSNEAL A+MDRSKHPKTV
Sbjct: 394 LVSQMLGFQAIEVNASDNRGKANAKIDKGIGGSNANSIKELVSNEALGAHMDRSKHPKTV 453
Query: 476 LIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRK 535
LIMDEVDGMSAGDRGG+ADLIASIKISKIPIICICNDRYSQKLKSLVNYC L FRKP K
Sbjct: 454 LIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTK 513
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRL 595
Q++AKRL+Q+ANAEGL+VNEIALEELA+RVNGD+RMA+NQLQYMSLS+SVIKYDD+RQRL
Sbjct: 514 QQMAKRLLQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSVIKYDDVRQRL 573
Query: 596 LSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGR 655
LSSAKDEDISPF AVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRP+ AG+
Sbjct: 574 LSSAKDEDISPFVAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPTLAGK 633
Query: 656 DE--VKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLE 713
D+ VKR+SL+ARAAESI DGDI NVQIRR +QWQLSQ+ S ASCI PAAL+HGQRETLE
Sbjct: 634 DDNGVKRMSLLARAAESIGDGDIINVQIRRYRQWQLSQAGSFASCITPAALLHGQRETLE 693
Query: 714 QGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTE 773
QGERNFNRFGGWLGKNSTMGKN RLLEDLH H LASR+S GR TLR+DY +L+LK+LT+
Sbjct: 694 QGERNFNRFGGWLGKNSTMGKNKRLLEDLHVHLLASRESNSGRGTLRIDYLTLILKRLTD 753
Query: 774 PLRVLPKDELLRKLL 788
PLR+LPKD+ ++K++
Sbjct: 754 PLRMLPKDDAVQKVV 768
>gi|359479291|ref|XP_002265891.2| PREDICTED: replication factor C subunit 1-like [Vitis vinifera]
Length = 933
Score = 1025 bits (2650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/795 (70%), Positives = 629/795 (79%), Gaps = 51/795 (6%)
Query: 4 DIRKWFLKPHSKDKDNATIPA--------NTALSNLETTNSEPGCGGHESMGRRKTSKYF 55
DIRKWF+K H D N PA + S +P GG ES RRKTSKYF
Sbjct: 7 DIRKWFMKKHDNDNGNPLKPAKPEPKASQSGKPSPATVQQEKPVHGGQESSCRRKTSKYF 66
Query: 56 ATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKADDDDDDFVPPSVKKNSVGA 115
QKP+D E EELPAKRK +K +S+ PP
Sbjct: 67 ----QKPKDEKEMEELPAKRKTQKGTKESLN------------------PP--------- 95
Query: 116 TPSKKLKSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRGG 175
PSKK++ + DDE+ D K TE P+KS GRGRGGRGA PA GRGRGG
Sbjct: 96 -PSKKIRRVVDDDDDDFVLHKSDDEKVD-KDTEPPIKSGGRGRGGRGALVTPAGGRGRGG 153
Query: 176 GRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRV 235
GRGGFMNFGERKDPPHKGEKEVPEGA DCL GLTFVISGTLDSLEREEAEDLIKRHGGRV
Sbjct: 154 GRGGFMNFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRV 213
Query: 236 TGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSV 295
TGSVSKKTN+LLCDEDI G KS KAKELGT FLTEDGLFDMI AS KA A+ E KKS+
Sbjct: 214 TGSVSKKTNFLLCDEDIGGNKSAKAKELGTAFLTEDGLFDMICASNHAKAPARGEPKKSL 273
Query: 296 EKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTP 355
+KV + PKKSPQ +E K +R A+ K Q I +SLTWTEKY+PK P
Sbjct: 274 DKVVLATPKKSPQKVEKKG--------KRTVLAATTPKHIYQTIGHASLTWTEKYKPKVP 325
Query: 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAK 415
N+I+GNQ LVKQLH WLAHWNE+FL TGTK GKKQND+ A+KA +LSG+PG+GKTT+AK
Sbjct: 326 NDIIGNQSLVKQLHEWLAHWNEQFLHTGTKGKGKKQNDSGAKKAVLLSGTPGIGKTTSAK 385
Query: 416 LVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTV 475
LV QMLGFQAIEVNASD+RGKA+AKI KGIGGSNANSIKELVSNEAL A+MDRSKHPKTV
Sbjct: 386 LVSQMLGFQAIEVNASDNRGKANAKIDKGIGGSNANSIKELVSNEALGAHMDRSKHPKTV 445
Query: 476 LIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRK 535
LIMDEVDGMSAGDRGG+ADLIASIKISKIPIICICNDRYSQKLKSLVNYC L FRKP K
Sbjct: 446 LIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTK 505
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRL 595
Q++AKRL+Q+ANAEGL+VNEIALEELA+RVNGD+RMA+NQLQYMSLS+SVIKYDD+RQRL
Sbjct: 506 QQMAKRLLQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSVIKYDDVRQRL 565
Query: 596 LSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGR 655
LSSAKDEDISPF AVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRP+ AG+
Sbjct: 566 LSSAKDEDISPFVAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPTLAGK 625
Query: 656 DE--VKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLE 713
D+ VKR+SL+ARAAESI DGDI NVQIRR +QWQLSQ+ S ASCI PAAL+HGQRETLE
Sbjct: 626 DDNGVKRMSLLARAAESIGDGDIINVQIRRYRQWQLSQAGSFASCITPAALLHGQRETLE 685
Query: 714 QGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTE 773
QGERNFNRFGGWLGKNSTMGKN RLLEDLH H LASR+S GR TLR+DY +L+LK+LT+
Sbjct: 686 QGERNFNRFGGWLGKNSTMGKNKRLLEDLHVHLLASRESNSGRGTLRIDYLTLILKRLTD 745
Query: 774 PLRVLPKDELLRKLL 788
PLR+LPKD+ ++K++
Sbjct: 746 PLRMLPKDDAVQKVV 760
>gi|356517673|ref|XP_003527511.1| PREDICTED: replication factor C subunit 1-like [Glycine max]
Length = 947
Score = 994 bits (2570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/793 (67%), Positives = 626/793 (78%), Gaps = 29/793 (3%)
Query: 4 DIRKWFLKPHSKDKDNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQKPE 63
DIRKWF+K H K + A+ ++ E T + GG ES GRR TSKYF ++KQK +
Sbjct: 3 DIRKWFMKTHDKGNNAASSKPSSDKPQSEKTVAFAVAGGQESSGRRITSKYFNSNKQKGK 62
Query: 64 DGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKADDDDDDFVPPSVKKNSVGATPSKKLKS 123
D EK+ELPAKRK KD ++ H +DD DD V P+ KK TP+KKLKS
Sbjct: 63 DEKEKQELPAKRKNAKDS---------EEIH--EDDGDDSVLPTNKKKLADTTPTKKLKS 111
Query: 124 GSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGG--FM 181
GSGR + +KS +++ +E+D K S KS+GRG GG G GRG G G FM
Sbjct: 112 GSGRGIPKKSAVLEESDEDDDKDAVSAAKSAGRGGGGGGRGAPGRSTGGRGRGGGRGGFM 171
Query: 182 NFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSK 241
NFGERKDPPHKGEKEVPEGAPDCL GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSK
Sbjct: 172 NFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSK 231
Query: 242 KTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAAS 301
KTNYLLCDEDI G KS KAKELGT FLTEDGLFDMIRASKP KA +Q E KK V K A
Sbjct: 232 KTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDMIRASKPAKASSQ-EDKKLVNKAVA- 289
Query: 302 LPKKSPQNIEAKSTSAPKAPIE----RMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNE 357
+ ++S +PK+ ++ ++ + AK K QSS WTEKYRPK P +
Sbjct: 290 --------VASQSKVSPKSQVKGKPLSSRSPSKQAKPKTATTVQSSSMWTEKYRPKDPKD 341
Query: 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLV 417
I+GNQ LV QL WL WNE FLDTG K+ GKKQND+ +KA +LSG+PG+GKTT+AKLV
Sbjct: 342 IIGNQSLVLQLRNWLKAWNEHFLDTGNKKQGKKQNDSGLKKAVLLSGTPGIGKTTSAKLV 401
Query: 418 CQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLI 477
CQ LGFQAIEVNASDSRGKAD+KI KGI GS NS+KELV+NEA+ NM+RSKH K+VLI
Sbjct: 402 CQELGFQAIEVNASDSRGKADSKIEKGISGSKTNSVKELVTNEAIGVNMERSKHYKSVLI 461
Query: 478 MDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQE 537
MDEVDGMSAGDRGG+ADLIASIKISKIPIICICNDRYSQKLKSLVNYC L FRKP KQ+
Sbjct: 462 MDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQ 521
Query: 538 IAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLS 597
+AKRLM ++ AE L+VNEIALEELA+RVNGD+RMA+NQLQYMSLS+SVI YDDIRQR L+
Sbjct: 522 MAKRLMDVSKAERLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSVINYDDIRQRFLT 581
Query: 598 SAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDE 657
+AKDEDISPFTAVDKLFGFN GKL+MDERI+LSMSDPDLVPL+IQENYINYRPS AG+D+
Sbjct: 582 NAKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLIIQENYINYRPSLAGKDD 641
Query: 658 --VKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQG 715
+KR++LIARAAESI+DGDI NVQIRR +QWQLSQ+SSLA+ IIPA+L+HGQRE LEQG
Sbjct: 642 SGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSLATSIIPASLLHGQREILEQG 701
Query: 716 ERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
ERNFNRFGGWLGKNSTMGKNLRLL+DLH H LASR+S GRDT+R++Y +LLLK++TEPL
Sbjct: 702 ERNFNRFGGWLGKNSTMGKNLRLLDDLHVHILASRESSSGRDTIRMEYLTLLLKEMTEPL 761
Query: 776 RVLPKDELLRKLL 788
R LPK E +++++
Sbjct: 762 RTLPKAEAVQQVV 774
>gi|356544778|ref|XP_003540824.1| PREDICTED: replication factor C subunit 1-like [Glycine max]
Length = 1112
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/789 (69%), Positives = 631/789 (79%), Gaps = 14/789 (1%)
Query: 4 DIRKWFLKPHSKDKDNATI-PANTALSNLETTNSEPGC-GGHESMGRRKTSKYFATDKQK 61
DIRKWF+K H K + A+ P+N + + SE GG ES GRR TSKYF ++KQK
Sbjct: 164 DIRKWFMKTHDKGNNAASSKPSNQPKPSSDKPQSEKTVAGGQESSGRRITSKYFNSNKQK 223
Query: 62 PEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKADDDDDDFVPPSVKKNSVGATPSKKL 121
+D E +ELPAKRK KD S KK H +DD DD V P+ KK TP+KKL
Sbjct: 224 GKDKKEMQELPAKRKNMKD---SEEIPEPKKIH--EDDGDDSVLPTNKKKLADTTPTKKL 278
Query: 122 KSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFM 181
KSGSGR + QKS +++ +E+D K S KS+GRG GGRGA G GRGRGGGRGGFM
Sbjct: 279 KSGSGRGLPQKSAVLEESDEDDDKDAVSAAKSAGRGDGGRGAPGRSTSGRGRGGGRGGFM 338
Query: 182 NFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSK 241
NFGERKDPPHKGEKEVPEGAPDCL GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSK
Sbjct: 339 NFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSK 398
Query: 242 KTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAAS 301
KTNYLLCDEDI G KS KAK+LGT FLTEDGLFDMIR SKP KA +Q E KK V K A
Sbjct: 399 KTNYLLCDEDIGGRKSEKAKQLGTSFLTEDGLFDMIRGSKPAKAPSQ-EDKKPVNKAVAV 457
Query: 302 LPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGN 361
S + KS S P+ ++ ++ AK K QSSL WTEKYRPK P +I+GN
Sbjct: 458 ---ASQSKVSPKSQSTNAVPLSS-RSPSNQAKPKTATTVQSSLMWTEKYRPKDPKDIIGN 513
Query: 362 QQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421
Q LV QL WL WNE FLDTG K+ GKKQND+ +KA +LSG+PG+GKTT+A LVCQ L
Sbjct: 514 QSLVLQLRNWLKAWNEHFLDTGNKKQGKKQNDSGLKKAVLLSGTPGIGKTTSATLVCQEL 573
Query: 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEV 481
GFQAIEVNASDSRGKAD+KI KGI GS NS+KELV+NEA+ NM RSKH K+VLIMDEV
Sbjct: 574 GFQAIEVNASDSRGKADSKIEKGISGSKTNSVKELVTNEAIGINMGRSKHYKSVLIMDEV 633
Query: 482 DGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
DGMSAGDRGG+ADLIASIKISKIPIICICNDRYSQKLKSLVNYC L FRKP KQ++AKR
Sbjct: 634 DGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKR 693
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD 601
LM +A AE L+VNEIALEELA+RVNGD+RMA+NQLQYMSLS+S+I YDDIRQR L++AKD
Sbjct: 694 LMDVAKAERLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSIINYDDIRQRFLTNAKD 753
Query: 602 EDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDE--VK 659
EDISPFTAVDKLFGFN GKL+MDERI+LSMSDPDLVPL+IQENYINYRPS AG+D+ +K
Sbjct: 754 EDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLIIQENYINYRPSMAGKDDSGIK 813
Query: 660 RLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNF 719
R++LIARAAESI+DGDI NVQIRR +QWQLSQ+SS+A+ IIPA+L+HGQRE LEQGERNF
Sbjct: 814 RMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSVATSIIPASLLHGQREILEQGERNF 873
Query: 720 NRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLP 779
NRFGGWLGKNSTMGKNLRLL+DLH H LASR+S GRDT+R++Y +LLLKQ+TE LR LP
Sbjct: 874 NRFGGWLGKNSTMGKNLRLLDDLHVHILASRESSSGRDTIRMEYLTLLLKQMTETLRTLP 933
Query: 780 KDELLRKLL 788
K E +++++
Sbjct: 934 KAEAVQQVV 942
>gi|22326948|ref|NP_680188.1| replication factor C1 [Arabidopsis thaliana]
gi|13374860|emb|CAC34494.1| replication factor C large subunit-like protein [Arabidopsis
thaliana]
gi|48958527|gb|AAT47816.1| At5g22010 [Arabidopsis thaliana]
gi|332005585|gb|AED92968.1| replication factor C1 [Arabidopsis thaliana]
Length = 956
Score = 976 bits (2522), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/793 (69%), Positives = 638/793 (80%), Gaps = 21/793 (2%)
Query: 4 DIRKWFLKPHSKDKDNATIPANTA-----LSNLETT---NSEPGCGGHESMGRRKTSKYF 55
DIRKWF+K H +K N + P +T+ + N T SE E+ RRKTSKYF
Sbjct: 3 DIRKWFMKAH--EKGNGSAPKSTSSKAGPVKNAAETAPIKSEQASEDLETADRRKTSKYF 60
Query: 56 ATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKADDDDDDFVPPSVKKNSVGA 115
DK K +D E E +PAKRK + + V+ P +K K DDDDD + + +
Sbjct: 61 GKDKTKVKDEKEVEAIPAKRKLKTESDDLVKPRP-RKVTKVVDDDDDDFDVPISRKTRDT 119
Query: 116 TPSKKLKSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRGG 175
TPSKKLKSGSGR +A K+VD DDD++ + K E+PLKS+GRGRGGR A GA GRGRGG
Sbjct: 120 TPSKKLKSGSGRGIASKTVDNDDDDDGEDK--ETPLKSAGRGRGGRAAPGASTGGRGRGG 177
Query: 176 GRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRV 235
GRGGFMNFGERKDPPHKGEKEVPEG PDCL GLTFVISGTLDSLEREEAEDLIKRHGGR+
Sbjct: 178 GRGGFMNFGERKDPPHKGEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRI 237
Query: 236 TGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSV 295
TGSVSKKT YLLCDEDI G KS KAKELGT FLTEDGLFD+IR+SKP+K S K
Sbjct: 238 TGSVSKKTTYLLCDEDIGGRKSEKAKELGTKFLTEDGLFDIIRSSKPVKKSLPERSNKGT 297
Query: 296 EKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTP 355
EK+ A PK SPQ E + K+ +++ PAK K + I ++SL WTEKYRPK P
Sbjct: 298 EKICAP-PKTSPQKEETRGKPLAKSSPKKV----PPAKGKNK-IIETSLPWTEKYRPKVP 351
Query: 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAK 415
NEIVGNQ LV QLH WL+HW+++F TG+K GKK NDA ++KA +LSG+PG+GKTT+AK
Sbjct: 352 NEIVGNQSLVTQLHNWLSHWHDQFGGTGSKGKGKKLNDAGSKKAVLLSGTPGIGKTTSAK 411
Query: 416 LVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTV 475
LV QMLGFQA+EVNASDSRGKA++ I+KGIGGSNANS+KELV+NEA++AN DRSKHPKTV
Sbjct: 412 LVSQMLGFQAVEVNASDSRGKANSNIAKGIGGSNANSVKELVNNEAMAANFDRSKHPKTV 471
Query: 476 LIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRK 535
LIMDEVDGMSAGDRGG+ADLIASIKISKIPIICICNDRYSQKLKSLVNYC L +RKP K
Sbjct: 472 LIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPLNYRKPTK 531
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRL 595
Q++AKRLM IA AEGLE+NEIALEELA+RVNGDIR+A+NQLQYMSLS+SVIKYDDIRQRL
Sbjct: 532 QQMAKRLMHIAKAEGLEINEIALEELAERVNGDIRLAVNQLQYMSLSMSVIKYDDIRQRL 591
Query: 596 LSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGR 655
LSSAKDEDISPFTAVDKLFG+NGGKLRMDERIDLSMSDPDLVPLLIQENY+NYRPS G+
Sbjct: 592 LSSAKDEDISPFTAVDKLFGYNGGKLRMDERIDLSMSDPDLVPLLIQENYLNYRPS--GK 649
Query: 656 DEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQG 715
DE KR+ L+ARAAESI+DGDI NVQIRR +QWQLSQS +AS I+PA+L+HG RE LEQG
Sbjct: 650 DEAKRMDLLARAAESIADGDIINVQIRRYRQWQLSQSCCVASSILPASLLHGSREVLEQG 709
Query: 716 ERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
ERNFNRFGGWLGKNST GKN RL+EDLH H LASR+S GR+TLR+DY LLL +LT PL
Sbjct: 710 ERNFNRFGGWLGKNSTAGKNRRLMEDLHVHVLASRESSAGRETLRVDYLPLLLSRLTSPL 769
Query: 776 RVLPKDELLRKLL 788
+ LPKDE + +++
Sbjct: 770 QTLPKDEAVSEVV 782
>gi|312282245|dbj|BAJ33988.1| unnamed protein product [Thellungiella halophila]
Length = 933
Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/794 (69%), Positives = 630/794 (79%), Gaps = 44/794 (5%)
Query: 4 DIRKWFLKPHSKDKDNATIPANTALSNLETTN--------SEPGCGGHESMGRRKTSKYF 55
DIRKWF+K H +K N + P +T+ + T+ SE ES RRKTSKYF
Sbjct: 3 DIRKWFMKAH--EKGNGSAPKSTSSKAVAVTSAAETASIKSEQASEDQESAARRKTSKYF 60
Query: 56 ATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKADDDDDDFVPPSVKKNSVGA 115
K +P +K K DDDDDDF P+ +K +
Sbjct: 61 G--KSRP----------------------------RKAIKVDDDDDDFEVPNSRKTR-DS 89
Query: 116 TPSKKLKSGSGRAVAQKSVDIDDDEEED-VKKTESPLKSSGRGRGGRGASGAPAVGRGRG 174
TPSKKLKSGSGR V K+VDID+D++ + ++ E+PLKS GRGRGGR ASGA GRGRG
Sbjct: 90 TPSKKLKSGSGRGVTSKAVDIDEDDDGEDAQEKETPLKSGGRGRGGRAASGASTGGRGRG 149
Query: 175 GGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGR 234
GGRGGFMNFGERKDPPHKGEKEVPEG PDCL GLTFVISGTLDSLEREEAEDLIKRHGGR
Sbjct: 150 GGRGGFMNFGERKDPPHKGEKEVPEGNPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGR 209
Query: 235 VTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKS 294
VTGSVSKKT YLLCDEDI G KS KAKELGT FLTEDGLFDMIR+SKP+K + K
Sbjct: 210 VTGSVSKKTTYLLCDEDIGGRKSEKAKELGTKFLTEDGLFDMIRSSKPVKKSLPERTNKG 269
Query: 295 VEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKT 354
EKV+A L K SPQ E + K ++ +SPAK K + I Q+SL WTEKYRPK
Sbjct: 270 TEKVSAQL-KISPQKEETRGKLVAKISPNKVPPHSSPAKAK-KKIIQTSLPWTEKYRPKV 327
Query: 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAA 414
PNEIVGNQ LV QLH WL+HW+++F TG+K GKK NDA A+KA ++SG+PG+GKTT+A
Sbjct: 328 PNEIVGNQSLVTQLHNWLSHWHDQFGGTGSKGKGKKLNDAGAKKAVLMSGTPGIGKTTSA 387
Query: 415 KLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474
KLV QMLGFQA+EVNASDSRGKA++ I+KGIGGSNAN++KELV+NEA++AN+DRSKHPKT
Sbjct: 388 KLVSQMLGFQAVEVNASDSRGKANSNIAKGIGGSNANTVKELVNNEAIAANIDRSKHPKT 447
Query: 475 VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPR 534
VLIMDEVDGMSAGDRGG+ADLIASIKISKIPIICICNDRYSQKLKSLVNYC L FRKP
Sbjct: 448 VLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPLNFRKPT 507
Query: 535 KQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQR 594
KQ++AKRL IA AEGLEVNEIALEELA+RVNGDIR+A+NQLQYMSLS+SVIKYDDIRQR
Sbjct: 508 KQQMAKRLTHIAKAEGLEVNEIALEELAERVNGDIRLALNQLQYMSLSMSVIKYDDIRQR 567
Query: 595 LLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAG 654
LLSSAKDEDISPFTAVDKLFG+NGGKLRMDERIDLSMSD DLVPLL+QENY+NYRPSS G
Sbjct: 568 LLSSAKDEDISPFTAVDKLFGYNGGKLRMDERIDLSMSDFDLVPLLVQENYLNYRPSSTG 627
Query: 655 RDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQ 714
+DE KR+ L+ARAAESI+DGDI NVQIRR++QWQLS SS +AS I+PA+L+HG RE LEQ
Sbjct: 628 KDEAKRMELLARAAESIADGDIINVQIRRHRQWQLSLSSCVASSILPASLLHGSREVLEQ 687
Query: 715 GERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEP 774
GERNFNRFGGWLGKNST GKN RLLEDLH H LASR+S GR+T+R+DY LLL +LT P
Sbjct: 688 GERNFNRFGGWLGKNSTAGKNTRLLEDLHVHVLASRESSSGRETIRVDYLPLLLNRLTSP 747
Query: 775 LRVLPKDELLRKLL 788
L+ LPKDE + +++
Sbjct: 748 LQTLPKDEAVSEVV 761
>gi|297812313|ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297319877|gb|EFH50299.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 960
Score = 954 bits (2465), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/794 (69%), Positives = 638/794 (80%), Gaps = 19/794 (2%)
Query: 4 DIRKWFLKPHSKDKDNATIPANT------ALSNLETT--NSEPGCGGHESMGRRKTSKYF 55
DIRKWF+K H +K NA+ P +T A + ET SE E+ RRKTSK+F
Sbjct: 3 DIRKWFMKAH--EKGNASAPKSTSSKAGPARNAAETAPLKSEQASEDLETAARRKTSKFF 60
Query: 56 ATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKADDDDDDFVPPSVKKNSVGA 115
DK K +D E EE+PAKRK + D + P K DDDDDD + + + +
Sbjct: 61 GKDKTKVKDEKEVEEIPAKRKLKTDSDDLAKPRPRKVTKVVDDDDDDDFDVPISRKTRDS 120
Query: 116 TPSKKLKSGSGRAVAQKSVDIDDDEEEDVKKT-ESPLKSSGRGRGGRGASGAPAVGRGRG 174
TPSKKLKSGSGR +A K+VD D+D++ + + E+PLK++GRGRGGR A GA GRGRG
Sbjct: 121 TPSKKLKSGSGRGIASKTVDNDEDDDGEDAQDKETPLKAAGRGRGGRAAPGASTGGRGRG 180
Query: 175 GGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGR 234
GGRGGFMNFGERKDPPHKGEKEVPEG PDCL GLTFVISGTLDSLEREEAEDLIKRHGGR
Sbjct: 181 GGRGGFMNFGERKDPPHKGEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGR 240
Query: 235 VTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKS 294
+TGSVSKKT YLLCDEDI G KS KAKELGT FLTEDGLFDMIR+SKP+K + K
Sbjct: 241 ITGSVSKKTTYLLCDEDIGGRKSEKAKELGTKFLTEDGLFDMIRSSKPVKKSLPERTNKG 300
Query: 295 VEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKT 354
EK+ A PK SPQ E + K+ ++ PAK K + I ++SL WTEKYRPK
Sbjct: 301 TEKICAP-PKTSPQKEETRGKPLAKSSPNKV----PPAKGK-KKIIETSLPWTEKYRPKV 354
Query: 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAA 414
PNEIVGNQ LV QLH WL+HW+++F TG+K GKK NDA A+KA +LSG+PG+GKTT+A
Sbjct: 355 PNEIVGNQSLVTQLHNWLSHWHDQFGGTGSKGKGKKLNDAGAKKAVLLSGTPGIGKTTSA 414
Query: 415 KLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474
KLV QMLGFQA+EVNASDSRGKA++ I+KGIGGSNAN++KELV+NEA++AN+DRSKHPKT
Sbjct: 415 KLVSQMLGFQAVEVNASDSRGKANSNIAKGIGGSNANTVKELVNNEAMAANLDRSKHPKT 474
Query: 475 VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPR 534
VLIMDEVDGMSAGDRGG+ADLIASIKISKIPIICICNDRYSQKLKSLVNYC L +RKP
Sbjct: 475 VLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPLNYRKPT 534
Query: 535 KQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQR 594
KQ++AKRLM IA AEGLE+NEIALEELA+RVNGDIR+A+NQLQYMSLS+S IKYDDIRQR
Sbjct: 535 KQQMAKRLMHIAKAEGLEINEIALEELAERVNGDIRLALNQLQYMSLSMSAIKYDDIRQR 594
Query: 595 LLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAG 654
LLSSAKDEDISPFTAVDKLFG+NGGKLRMDERIDLSMSDPDLVPLLIQENY+NYRPS G
Sbjct: 595 LLSSAKDEDISPFTAVDKLFGYNGGKLRMDERIDLSMSDPDLVPLLIQENYLNYRPS--G 652
Query: 655 RDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQ 714
+DE KR+ L+A AAESI+DGDI NVQIRR +QWQLSQS +AS I+PA+L+HG RE LEQ
Sbjct: 653 KDEAKRMDLLALAAESIADGDIINVQIRRYRQWQLSQSCCVASSILPASLLHGSREVLEQ 712
Query: 715 GERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEP 774
GERNFNRFGGWLGKNST GKN RL+EDLH H LASR+S GR+TLR+DY SLLL +LT P
Sbjct: 713 GERNFNRFGGWLGKNSTAGKNRRLMEDLHVHVLASRESSAGRETLRVDYLSLLLSRLTSP 772
Query: 775 LRVLPKDELLRKLL 788
L+ LPKDE + +++
Sbjct: 773 LQTLPKDEAVSEVV 786
>gi|115485959|ref|NP_001068123.1| Os11g0572100 [Oryza sativa Japonica Group]
gi|108864532|gb|ABA94349.2| BRCA1 C Terminus domain containing protein, expressed [Oryza sativa
Japonica Group]
gi|113645345|dbj|BAF28486.1| Os11g0572100 [Oryza sativa Japonica Group]
gi|215697840|dbj|BAG92033.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 1021
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/861 (59%), Positives = 605/861 (70%), Gaps = 82/861 (9%)
Query: 1 MPQDIRKWFLKPHSKDKDNATIPANTAL------SNLETTNSEPGCGG--HESMGRRKTS 52
M DIRKWF+K K+ A TAL S E ++ P + RRKTS
Sbjct: 1 MSSDIRKWFMKAQDKNGGAAKPAGTTALAKKPVLSIPEKPSAAPSMAACDQDCSARRKTS 60
Query: 53 KYFATDKQKPEDG----GEKEELPAKRKAEK------DDGKSVRSSPLKKFHKADDDDDD 102
KYFA+ +K ED G LP KRK +K DD K + P K+ HK ++DDDD
Sbjct: 61 KYFASKTEKEEDTSAGKGTGRGLP-KRKLQKVSDELEDDMKPL---PAKEVHKEEEDDDD 116
Query: 103 --FVPPSVKKNSVGATPSKKLKSGSGRAVAQ----------------------------- 131
FV PS +K V PSKKLK G+ A A
Sbjct: 117 DDFVAPSKRKTPVKPPPSKKLK-GASTAEAHGKTGLDDDNEDKMDEDAKTPSKASGSGRG 175
Query: 132 -----------------KSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRG 174
K++ +DDD EED ++ S + G + GRGRG
Sbjct: 176 RGRGRGRGGRGAGAAHGKTIGLDDDGEEDKMDEDAKTPS----KAAGRGRGGASGGRGRG 231
Query: 175 GGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGR 234
GG GFMNFGERKDPPHKGEKEVPEGAPDCL GLTFVISGTLDSLEREEA DLIKR+GGR
Sbjct: 232 GGGRGFMNFGERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGR 291
Query: 235 VTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA-LAQAESKK 293
VTGS+SKKTNYLL DED+ G KS KAKELG PFLTEDGLFDMIR SKP KA +A+ +S K
Sbjct: 292 VTGSISKKTNYLLADEDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSDK 351
Query: 294 SVEKVAASLPKKSPQNIEAKS----TSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEK 349
+ EK S K SP +E + T+ + K AS +K + + SL WTEK
Sbjct: 352 NSEKQQKSPMKSSPVKVERRDGNQITTGKNISPKSNKGSASIDNQKVNIVDRGSLQWTEK 411
Query: 350 YRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMG 409
YRPK PN+IVGNQ +VKQLH WL W ++FL +G K GKKQ D+ A+KA +LSG PG+G
Sbjct: 412 YRPKVPNDIVGNQSMVKQLHDWLRSWEDQFLHSGQKGKGKKQADSGAKKAVLLSGPPGIG 471
Query: 410 KTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRS 469
KTT AK+V QMLG QAIEVNASDSRGKAD+KI KG+GGS +NSIKEL+SN L+ + +R
Sbjct: 472 KTTTAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNSIKELISNATLNYSNNRL 531
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
K PK VL+MDEVDGMSAGDRGG+ADLIASIK+SKIPIICICNDRYSQKLKSLVNYC L
Sbjct: 532 KRPKAVLVMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLLLN 591
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
FRKP KQ++ KRLM+IA EGL+ E A+EELA+RV+GDIRMA+N LQYMSLS SV+KYD
Sbjct: 592 FRKPTKQQMGKRLMEIAKKEGLQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYD 651
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYR 649
DIRQRL SS KDEDISPFTAVDKLFGFNGG+LRMDERIDLSMSDPDLVPL+IQENYINYR
Sbjct: 652 DIRQRLNSSTKDEDISPFTAVDKLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYR 711
Query: 650 PSSAGRDE--VKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHG 707
P + G+D+ VKR++ +ARAAESI+D DI NVQIRR +QWQLSQ++ L+S I+PAALMHG
Sbjct: 712 PITVGKDDSGVKRMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHG 771
Query: 708 QRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLL 767
RE LE GERNFNRFGGWLGK ST KN+RLLED H H LAS+++ L R++LRLDY +LL
Sbjct: 772 NREILEAGERNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLL 831
Query: 768 LKQLTEPLRVLPKDELLRKLL 788
L+QLT+PL+ +PKDE ++K++
Sbjct: 832 LRQLTDPLKTMPKDEAVQKVV 852
>gi|30314655|dbj|BAC76085.1| replication factor C 110 kDa subunit [Oryza sativa Japonica Group]
Length = 1021
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/861 (59%), Positives = 605/861 (70%), Gaps = 82/861 (9%)
Query: 1 MPQDIRKWFLKPHSKDKDNATIPANTAL------SNLETTNSEPGCGG--HESMGRRKTS 52
M DIRKWF+K K+ A TAL S E ++ P + RRKTS
Sbjct: 1 MSSDIRKWFMKAQDKNGGAAKPAGTTALAKKPVLSIPEKPSAAPSMAACDQDCSARRKTS 60
Query: 53 KYFATDKQKPEDG----GEKEELPAKRKAEK------DDGKSVRSSPLKKFHKADDDDDD 102
KYFA+ +K ED G LP KRK +K DD K + P K+ HK ++DDDD
Sbjct: 61 KYFASKTEKEEDTSAGKGTGRGLP-KRKLQKVSDELEDDMKPL---PAKEVHKEEEDDDD 116
Query: 103 --FVPPSVKKNSVGATPSKKLKSGSGRAVAQ----------------------------- 131
FV PS +K V PSKKLK G+ A A
Sbjct: 117 DDFVAPSKRKTPVKPPPSKKLK-GASTAEAHGKTGLDDDNEDKMDEDAKTPSKASGSGRG 175
Query: 132 -----------------KSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRG 174
K++ +DDD EED ++ S + G + GRGRG
Sbjct: 176 RGRGRGRGGRGAGAAHGKTIGLDDDGEEDKMDEDAKTPS----KAAGRGRGGASGGRGRG 231
Query: 175 GGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGR 234
GG GFMNFGERKDPPHKGEKEVPEGAPDCL GLTFVISGTLDSLEREEA DLIKR+GGR
Sbjct: 232 GGGRGFMNFGERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGR 291
Query: 235 VTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA-LAQAESKK 293
VTGS+SKKTNYLL DED+ G KS KAKELG PFLTEDGLFDMIR SKP KA +A+ +S K
Sbjct: 292 VTGSISKKTNYLLADEDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSDK 351
Query: 294 SVEKVAASLPKKSPQNIEAKS----TSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEK 349
+ EK S K SP +E + T+ + K AS +K + + SL WTEK
Sbjct: 352 NSEKQQKSPMKSSPVKVERRDGNQITTGKNISPKSNKGSASIDNQKVNIVDRGSLQWTEK 411
Query: 350 YRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMG 409
YRPK PN+IVGNQ +VKQLH WL W ++FL +G K GKKQ D+ A+KA +LSG PG+G
Sbjct: 412 YRPKVPNDIVGNQSMVKQLHDWLKSWEDQFLHSGQKGKGKKQADSGAKKAVLLSGPPGIG 471
Query: 410 KTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRS 469
KTT AK+V QMLG QAIEVNASDSRGKAD+KI KG+GGS +NSIKEL+SN L+ + +R
Sbjct: 472 KTTTAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNSIKELISNATLNYSNNRL 531
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
K PK VL+MDEVDGMSAGDRGG+ADLIASIK+SKIPIICICNDRYSQKLKSLVNYC L
Sbjct: 532 KRPKAVLVMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLLLN 591
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
FRKP KQ++ KRLM+IA EGL+ E A+EELA+RV+GDIRMA+N LQYMSLS SV+KYD
Sbjct: 592 FRKPTKQQMGKRLMEIAKKEGLQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYD 651
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYR 649
DIRQRL SS KDEDISPFTAVDKLFGFNGG+LRMDERIDLSMSDPDLVPL+IQENYINYR
Sbjct: 652 DIRQRLNSSTKDEDISPFTAVDKLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYR 711
Query: 650 PSSAGRDE--VKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHG 707
P + G+D+ VKR++ +ARAAESI+D DI NVQIRR +QWQLSQ++ L+S I+PAALMHG
Sbjct: 712 PITVGKDDSGVKRMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHG 771
Query: 708 QRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLL 767
RE LE GERNFNRFGGWLGK ST KN+RLLED H H LAS+++ L R++LRLDY +LL
Sbjct: 772 NREILEAGERNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLL 831
Query: 768 LKQLTEPLRVLPKDELLRKLL 788
L+QLT+PL+ +PKDE ++K++
Sbjct: 832 LRQLTDPLKTMPKDEAVQKVV 852
>gi|357151909|ref|XP_003575946.1| PREDICTED: replication factor C subunit 1-like [Brachypodium
distachyon]
Length = 1048
Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/843 (59%), Positives = 588/843 (69%), Gaps = 64/843 (7%)
Query: 4 DIRKWFLKPHSKDKDNATIPANTA---------LSNLETTNSEPGCGGHESMGRRKTSKY 54
DIRKWF+KP K+ A +A LS E G ++ RRK SKY
Sbjct: 45 DIRKWFMKPCDKNAGAAKPSGASAGATGAKKPVLSIPEKAAPSKVPGDKDTSARRKASKY 104
Query: 55 FA----TDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKA--DDDDDDFVPPSV 108
FA TD E K +L DD K + + HK D+DDDDFV PS
Sbjct: 105 FAPKTETDSDVTETSLSKRKLQKSSDELDDDVKPLAA------HKVLEDEDDDDFVSPSK 158
Query: 109 KKNSV-----------------------GATPSKKLKSGSGRAVAQ------------KS 133
KK V TPSK G GR + K+
Sbjct: 159 KKTPVKPPPSKKLKAASNDDDEDRMDEDAKTPSKAAGRGRGRGRGRGGRGAGAGAAHGKT 218
Query: 134 VDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKG 193
+DDD EED + S GRG G GA GRGRGGG GFMNFGERKDPPHKG
Sbjct: 219 SSLDDDGEEDRMDEDDKTTSKAAGRGRGGRGGATPGGRGRGGGGRGFMNFGERKDPPHKG 278
Query: 194 EKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA 253
EKEVPEGAPDCL GLTFVISGTLDSLEREEA DLIKRHGGRVTGS+SKKT+YLL DED+
Sbjct: 279 EKEVPEGAPDCLAGLTFVISGTLDSLEREEAGDLIKRHGGRVTGSISKKTSYLLADEDVG 338
Query: 254 GAKSTKAKELGTPFLTEDGLFDMIRASKPMKA-LAQAESKKSVEKVAASLPKKSPQNIEA 312
G KSTKAK+LG PFLTEDGLFDMIR SKP K + + E K EK+ S K SP +E
Sbjct: 339 GVKSTKAKDLGVPFLTEDGLFDMIRKSKPAKPPVNKHEMNKISEKLQKSPSKSSPVKVER 398
Query: 313 K-----STSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQ 367
+ ST + K AS +K + + + +L WTEKYRPK PN+IVGNQ +VKQ
Sbjct: 399 RAVDQVSTINKSIASKSNKESASTDYQKAKIVDRGALQWTEKYRPKVPNDIVGNQSMVKQ 458
Query: 368 LHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
LH WL W +FL + K GKKQ D A+KA +LSG PG+GKTT AK+V QMLG QAIE
Sbjct: 459 LHDWLKSWEGQFLHSAQKGKGKKQIDGGAKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIE 518
Query: 428 VNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG 487
VNASDSRGKAD+KI KG+GGS +NSIK L+SN L+ + +R+K PK VL+MDEVDGMSAG
Sbjct: 519 VNASDSRGKADSKIEKGVGGSTSNSIKVLISNATLNYSDNRTKPPKAVLVMDEVDGMSAG 578
Query: 488 DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
DRGG+ADLIASIKISKIPI+CICNDRYSQKLKSLVNYC L FRKP KQ++ KRLM IA
Sbjct: 579 DRGGVADLIASIKISKIPIVCICNDRYSQKLKSLVNYCLLLNFRKPTKQQMGKRLMDIAR 638
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPF 607
EG++ E A+EELA+RV+GDIRMA+N LQYMSLS SV+KYDDIR RL SSAKDEDISPF
Sbjct: 639 KEGIQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIRLRLNSSAKDEDISPF 698
Query: 608 TAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDE--VKRLSLIA 665
TAVDKLFGFNGG+LRMDERIDLSMSDPDLVPL+IQENYINYRPS+ G+D+ VKR++ +A
Sbjct: 699 TAVDKLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYRPSAVGKDDSGVKRMNCLA 758
Query: 666 RAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGW 725
RAAESI+DGDI NVQIRR +QWQLSQ++ LAS I+PAALMHG RET E GERNFNRFGGW
Sbjct: 759 RAAESIADGDIVNVQIRRYRQWQLSQAACLASSIVPAALMHGNRETFEAGERNFNRFGGW 818
Query: 726 LGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDELLR 785
LGK ST KN RLLED+H H LAS+++ + R+ LRLDY +LLL+QL +PL+ +PKDE ++
Sbjct: 819 LGKYSTTNKNKRLLEDVHSHILASQQANVDREALRLDYLTLLLRQLADPLKTMPKDEAVQ 878
Query: 786 KLL 788
K++
Sbjct: 879 KVV 881
>gi|218185964|gb|EEC68391.1| hypothetical protein OsI_36544 [Oryza sativa Indica Group]
Length = 1014
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/616 (70%), Positives = 506/616 (82%), Gaps = 7/616 (1%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
FMNFGERKDPPHKGEKEVPEGAPDCL GLTFVISGTLDSLEREEA DLIKR+GGRVTGS+
Sbjct: 230 FMNFGERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSI 289
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA-LAQAESKKSVEKV 298
SKKTNYLL DED+ G KS KAKELG PFLTEDGLFDMIR SKP KA +A+ +S K+ EK
Sbjct: 290 SKKTNYLLADEDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSDKNSEKQ 349
Query: 299 AASLPKKSPQNIEAKS----TSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKT 354
S K SP +E + T+ + K AS +K + + SL WTEKYRPK
Sbjct: 350 QKSPMKSSPVKVERRDGNQITTGKNISPKSNKGSASIDNQKVNIVDRGSLQWTEKYRPKV 409
Query: 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAA 414
PN+IVGNQ +VKQLH WL W ++FL +G K GKKQ D+ A+KA +LSG PG+GKTT A
Sbjct: 410 PNDIVGNQSMVKQLHDWLRSWEDQFLHSGQKGKGKKQADSGAKKAVLLSGPPGIGKTTTA 469
Query: 415 KLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474
K+V QMLG QAIEVNASDSRGKAD+KI KG+GGS +NSIKEL+SN L+ + +R K PK
Sbjct: 470 KVVSQMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNSIKELISNATLNYSNNRLKRPKA 529
Query: 475 VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPR 534
VL+MDEVDGMSAGDRGG+ADLIASIK+SKIPIICICNDRYSQKLKSLVNYC L FRKP
Sbjct: 530 VLVMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLLLNFRKPT 589
Query: 535 KQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQR 594
KQ++ KRLM+IA EGL+ E A+EELA+RV+GDIRMA+N LQYMSLS SV+KYDDIRQR
Sbjct: 590 KQQMGKRLMEIAKKEGLQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIRQR 649
Query: 595 LLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAG 654
L SS KDEDISPFTAVDKLFGFNGG+LRMDERIDLSMSDPDLVPL+IQENYINYRP + G
Sbjct: 650 LNSSTKDEDISPFTAVDKLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYRPITVG 709
Query: 655 RDE--VKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETL 712
+D+ VKR++ +ARAAESI+D DI NVQIRR +QWQLSQ++ L+S I+PAALMHG RE L
Sbjct: 710 KDDSGVKRMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREIL 769
Query: 713 EQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLT 772
E GERNFNRFGGWLGK ST KN+RLLED H H LAS+++ L R++LRLDY +LLL+QLT
Sbjct: 770 EAGERNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLT 829
Query: 773 EPLRVLPKDELLRKLL 788
+PL+ +PKDE ++K++
Sbjct: 830 DPLKTMPKDEAVQKVV 845
>gi|242049958|ref|XP_002462723.1| hypothetical protein SORBIDRAFT_02g030910 [Sorghum bicolor]
gi|241926100|gb|EER99244.1| hypothetical protein SORBIDRAFT_02g030910 [Sorghum bicolor]
Length = 1025
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/865 (58%), Positives = 607/865 (70%), Gaps = 87/865 (10%)
Query: 1 MPQDIRKWFLKPHSKDKD----NATIPANTA--------LSNLETTNSEPGCGG------ 42
M DIRKWF+K H K+ AT P+ A LS E ++ P G
Sbjct: 1 MSSDIRKWFMKAHGKNAAPSGAAATKPSGAAAAEKKKPVLSIPEKKSAPPALGSSFGQCV 60
Query: 43 ----------------------------------HESMGRRKTSKYFATDKQKPED---- 64
H+ RRKTSKYF + +K D
Sbjct: 61 TCSNNRAIGNFPVGQCVTCSNNRAIGNFPVASCDHDPPARRKTSKYFGSKAEKDSDVEMA 120
Query: 65 ----GGEKEELPAKRKAEK------DDGKSVRSSPLKKFHKADDDDDD-FVPPSVKKNSV 113
G ++ AKRK +K +D K + P KK K ++DDDD FV +
Sbjct: 121 DASAGNSADKSAAKRKLQKCNNELKEDNKPL---PAKKISKDEEDDDDDFV-------AP 170
Query: 114 GATPSKKLKSGSGRAVAQKSVDIDDDEEEDV----KKTESPLKSSGRGRGGRGASGAPAV 169
+ S +A + + +DD E+ED KT S GRGRGGRG +GA
Sbjct: 171 PKKKTPVKPPPSKKAKVESNAQVDDAEDEDRMDEDAKTPSKGAGRGRGRGGRGGAGAAPG 230
Query: 170 GRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIK 229
GRGRGGG GFMNFGERKDPPHKGEKEVPEGAPDCL GLTFVISGTLDSLEREEA DLIK
Sbjct: 231 GRGRGGGGRGFMNFGERKDPPHKGEKEVPEGAPDCLSGLTFVISGTLDSLEREEAADLIK 290
Query: 230 RHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA-LAQ 288
R+GGRVTGS+SKKT+YLL DED+ G KS KAK+LG PFLTEDGLFD+IR SKP KA + +
Sbjct: 291 RYGGRVTGSISKKTSYLLADEDLGGVKSNKAKDLGVPFLTEDGLFDLIRKSKPAKAPVDK 350
Query: 289 AESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPA---KRKGQNIQQSSLT 345
+S S EK+ S K SP +E ++ ++ + A+ A K+K +N+ + S+
Sbjct: 351 QQSNNSFEKLQKSQTKSSPAKVEKRAEASAVGKSIASNSNAASASADKQKPKNVDRGSMQ 410
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRPK PN+IVGNQ +VKQLH WL W+ FL +G K GKKQ D++A+KA +LSG
Sbjct: 411 WTEKYRPKVPNDIVGNQSMVKQLHDWLKSWDALFLHSGQKGKGKKQADSAAKKAVLLSGP 470
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKTT AK+V QMLG QAIEVNASDSRGKAD+KI KG+GGS +NSIKEL+SN L+
Sbjct: 471 PGIGKTTTAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNSIKELISNATLNYG 530
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
+RSKHPK VLIMDEVDGMSAGDRGG+ADLIASIKISKIPIICICNDRYSQKLKSLVNYC
Sbjct: 531 DNRSKHPKAVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYC 590
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV 585
L FRKP KQ++ KRLM+IA EG++ E A+EELA+RV+GDIRMA+N LQYMSLS SV
Sbjct: 591 LMLNFRKPTKQQMGKRLMEIAKKEGIQAQENAMEELAERVHGDIRMALNHLQYMSLSQSV 650
Query: 586 IKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENY 645
+KYDDIR+RL SS+KDEDISPFTAVDKLFGFNGG+LRMDERID MSDPDLVPL+IQENY
Sbjct: 651 VKYDDIRERLNSSSKDEDISPFTAVDKLFGFNGGRLRMDERIDFGMSDPDLVPLIIQENY 710
Query: 646 INYRPSSAGRDE--VKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAA 703
INYRP++ G+DE VKR++ +ARAAESI+DGD+ NVQIRR +QWQLSQ++ AS I+PAA
Sbjct: 711 INYRPNTLGKDESGVKRMNALARAAESIADGDLVNVQIRRYRQWQLSQAACFASSIVPAA 770
Query: 704 LMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDY 763
MHG RE LE GERNFNRFGGWLGK ST KN RLLED+H H LAS+++ L R+ LRLDY
Sbjct: 771 WMHGNREVLEAGERNFNRFGGWLGKYSTTNKNRRLLEDVHSHILASQQANLDREALRLDY 830
Query: 764 FSLLLKQLTEPLRVLPKDELLRKLL 788
+L+L++LT+PL+ +PKDE ++K++
Sbjct: 831 LTLILRELTDPLKKMPKDEAVQKVV 855
>gi|414591589|tpg|DAA42160.1| TPA: hypothetical protein ZEAMMB73_255627 [Zea mays]
Length = 985
Score = 851 bits (2198), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/818 (59%), Positives = 599/818 (73%), Gaps = 34/818 (4%)
Query: 1 MPQDIRKWFLKPH---SKDKDNATIPANTA------LSNLETTNSEPGCGG--HESMGRR 49
M DIRKWF+KP + A P+ +A LS E ++ P H++ RR
Sbjct: 1 MSSDIRKWFMKPQDKSAAASGAAGKPSGSAAEKKPVLSIPEKKSAPPALASCDHDTSARR 60
Query: 50 KTSKYFATDKQKPED-------GGEKEELPAKRKAEKDDGKSVRSS---PLKKFHKADDD 99
KTSKYF + +K D GG+ AKRK +K + + S P KK ++D
Sbjct: 61 KTSKYFGSKAEKDSDVQMADASGGKS---AAKRKLQKCNDEVKEDSKPFPAKKMFDDEED 117
Query: 100 DDDFVPPSVKKNSVGATPSKKLKSGSGRAVAQKSVDIDDDEEEDV--KKTESPLKSSGRG 157
DD P K K + A A K+ +DD E+ED + ++P K +GRG
Sbjct: 118 DDFVAPAKKKTPVKPPPSKKLKVESNVEAPA-KTTGVDDAEDEDRMDEDAKTPSKGAGRG 176
Query: 158 RGGRGASGAPAVGRGRGGGRGG-FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTL 216
RG G GA A GRG G G FMNFGERKDPPHKGEKEVPEGAPDCL GLTFVISGTL
Sbjct: 177 RGRGGRGGAGAAPGGRGRGGGRGFMNFGERKDPPHKGEKEVPEGAPDCLSGLTFVISGTL 236
Query: 217 DSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDM 276
DSLEREEA DLIKR+GGRVTGS+SKKT+YLL DEDI G KS KAK+LG PFLTEDGLFD+
Sbjct: 237 DSLEREEATDLIKRYGGRVTGSISKKTSYLLADEDIGGVKSNKAKDLGVPFLTEDGLFDL 296
Query: 277 IRASKPMKA-LAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPA--- 332
IR SKP KA + + ++ S EK+ S K SP +E ++ ++ + A+ A
Sbjct: 297 IRKSKPAKAPVDKRQNNNSSEKLQKSQTKSSPAKVEKRAEASAVGKSIASNSNAASASAD 356
Query: 333 KRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQN 392
K+K + + + S+ WTEKYRPK PN+IVGNQ +VKQLH WL W+ FL +G K GKKQ
Sbjct: 357 KQKPKIVDRGSMQWTEKYRPKVPNDIVGNQSMVKQLHDWLKSWDALFLHSGQKGKGKKQT 416
Query: 393 DASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANS 452
D++A+KA +LSG PG+GKTT AK+V QMLG QAIEVNASDSRGKAD+KI KG+GGS +NS
Sbjct: 417 DSAAKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNS 476
Query: 453 IKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICND 512
IKEL++N L+ + +R KHPK VL+MDEVDGMSAGDRGG+ADLIASIKISKIPIICICND
Sbjct: 477 IKELINNATLNYSDNRLKHPKAVLVMDEVDGMSAGDRGGVADLIASIKISKIPIICICND 536
Query: 513 RYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMA 572
RYSQKLK+LVNYC L FRKP KQ++ KRLM+IA EG++ E A+EELA+RV+GDIRMA
Sbjct: 537 RYSQKLKNLVNYCLMLNFRKPTKQQMGKRLMEIAKKEGIQAQENAMEELAERVHGDIRMA 596
Query: 573 INQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMS 632
+N LQYMSLS SV+KYDDI++RL SS+KDEDISPFTAVDKLFGFNGG+LRMDER+D MS
Sbjct: 597 LNHLQYMSLSQSVVKYDDIKERLNSSSKDEDISPFTAVDKLFGFNGGRLRMDERMDFGMS 656
Query: 633 DPDLVPLLIQENYINYRPSSAGRDE--VKRLSLIARAAESISDGDIFNVQIRRNQQWQLS 690
DPDLVPL+IQENYINYRP++ G+DE VKR++ +ARAAESI+DGD+ NVQIRR +QWQLS
Sbjct: 657 DPDLVPLIIQENYINYRPNTIGKDESGVKRMNALARAAESIADGDLVNVQIRRYRQWQLS 716
Query: 691 QSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASR 750
Q++ AS I+PAALMHG RE LE GERNFNRFGGWLGK ST KN RLLED+H H LAS+
Sbjct: 717 QAACFASSIVPAALMHGNREILEAGERNFNRFGGWLGKYSTTNKNRRLLEDVHSHILASQ 776
Query: 751 KSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDELLRKLL 788
++ L RD LRLDY +L+L++LT+PL+ + KDE ++K++
Sbjct: 777 QANLDRDALRLDYLTLILRELTDPLKKMSKDEAVQKVV 814
>gi|168050549|ref|XP_001777721.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670941|gb|EDQ57501.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 850
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/633 (57%), Positives = 460/633 (72%), Gaps = 27/633 (4%)
Query: 166 APAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAE 225
APA GGG G NFG R+ PPHKGEKEVP+GA D L LTFVISGTLDSLEREEAE
Sbjct: 113 APAGRGRGGGGGRGGFNFGAREAPPHKGEKEVPQGADDALANLTFVISGTLDSLEREEAE 172
Query: 226 DLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA 285
LIK HGGRVTGSVSKKT+YLL DEDI G KS KAKELG F+TEDGLF+MIR +KP A
Sbjct: 173 HLIKSHGGRVTGSVSKKTDYLLADEDIGGRKSQKAKELGVKFITEDGLFEMIRKTKPKAA 232
Query: 286 LAQAESKKSVEK------VAASLPKKSP-QNIEAKSTSAPKAPIERMKTVASPAKRKGQN 338
+++ + E + +PK +N++ K + + + K++AS +
Sbjct: 233 ATSSQAPRPSEPAQPQKVIKPIIPKTDDVRNVKGKIANGTSSSVGNEKSIASGTE----- 287
Query: 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK 398
+W K+RP++ N+I+GNQ +VKQ+ WL W + G GKK + ++++K
Sbjct: 288 ------SWPYKHRPQSINDIIGNQSIVKQVQDWLVQWEKHH---GNAVKGKKGSSSTSQK 338
Query: 399 -AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
A +LSG PG+GKTT A+LVC +LG++A+EVNASD+RGK+D+ + GIGG +N+IKE++
Sbjct: 339 KAVLLSGPPGIGKTTTARLVCDLLGYEALEVNASDTRGKSDSNVKNGIGGKTSNTIKEMI 398
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQK 517
SN +L + K VLIMDEVDGMS GDRGG+ADLI SIK S IPIICICND+YSQK
Sbjct: 399 SNRSLGFGSKSER--KAVLIMDEVDGMSGGDRGGVADLILSIKSSHIPIICICNDKYSQK 456
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
LKSL+NYC L FRKP KQ++AKRL QIA +EGLEV+++ALEEL++RVNGD+RMA+NQLQ
Sbjct: 457 LKSLINYCLPLPFRKPTKQQMAKRLQQIAKSEGLEVDDLALEELSERVNGDMRMALNQLQ 516
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLV 637
YMSL +KY D+R RL++SAKDED++PF+AVDKL GF GG+LRMDERID +MSD DLV
Sbjct: 517 YMSLRSRSLKYSDVRTRLMASAKDEDVTPFSAVDKLLGFEGGRLRMDERIDAAMSDMDLV 576
Query: 638 PLLIQENYINYRPSSAGRDE--VKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
PLL+QENY+NY GRD+ R+ IAR A SI++GDI NVQI R +QWQ +Q +
Sbjct: 577 PLLVQENYLNY-CGPGGRDDSGTARMDAIARTALSIAEGDIVNVQIHRFRQWQHAQMGAF 635
Query: 696 ASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG 755
S +IPAA +HG+RE L QGERNFNRFGGWLGKNST GK RLLED+H H LASR +
Sbjct: 636 MSSVIPAAYIHGRREVLVQGERNFNRFGGWLGKNSTFGKKTRLLEDVHVHMLASRICEPT 695
Query: 756 RDTLRLDYFSLLLKQLTEPLRVLPKDELLRKLL 788
R+ +RLDY LL LT+PL LPKDE +++++
Sbjct: 696 REAVRLDYLPLLSMHLTQPLHTLPKDEAVQQVV 728
>gi|242068901|ref|XP_002449727.1| hypothetical protein SORBIDRAFT_05g022200 [Sorghum bicolor]
gi|241935570|gb|EES08715.1| hypothetical protein SORBIDRAFT_05g022200 [Sorghum bicolor]
Length = 946
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/612 (62%), Positives = 455/612 (74%), Gaps = 63/612 (10%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
FMNFGERKDPPHKGEKEVPEGAPDCL GLTFVISGTLDSLEREEA DLIKR+GGRVTGS+
Sbjct: 226 FMNFGERKDPPHKGEKEVPEGAPDCLSGLTFVISGTLDSLEREEATDLIKRYGGRVTGSI 285
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA-LAQAESKKSVEKV 298
SKKT+YLL DEDI G KS KAK+LG PFLTEDGLFD+IR SKP KA + + +S S EK+
Sbjct: 286 SKKTSYLLADEDIGGVKSNKAKDLGVPFLTEDGLFDLIRKSKPAKAPVDKHQSNNSSEKL 345
Query: 299 AASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEI 358
SL K SP +E ++ AS + + ++ +K +PK +
Sbjct: 346 QKSLTKSSPAKVEKRAE-------------ASAVGKSIASNSNAASASADKQKPKNVDR- 391
Query: 359 VGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVC 418
G+ Q W EK+ K+
Sbjct: 392 -GSMQ-----------WTEKY---------------------------------RPKVPN 406
Query: 419 QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478
++G Q++ VNASDSRGKAD+KI KG+GGS +NSIKEL+SN L+ +RSKHPK VLIM
Sbjct: 407 DIVGNQSM-VNASDSRGKADSKIEKGVGGSTSNSIKELISNATLNYGDNRSKHPKAVLIM 465
Query: 479 DEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEI 538
DEVDGMSAGDRGG+ADLIASIKISKIPIICICNDRYSQKLKSLVNYC L FRKP KQ++
Sbjct: 466 DEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLMLNFRKPTKQQM 525
Query: 539 AKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSS 598
KRLM+IA EG++ E A+EELA+RV+GDIRMA+N LQYMSLS SV+KYDDIR+RL SS
Sbjct: 526 GKRLMEIAKKEGIQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIRERLNSS 585
Query: 599 AKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDE- 657
+KDEDISPFTAVDKLFGFNGG+LRMDERID MSDPDLVPL+IQENYINYRP++ G+DE
Sbjct: 586 SKDEDISPFTAVDKLFGFNGGRLRMDERIDFGMSDPDLVPLIIQENYINYRPNTIGKDES 645
Query: 658 -VKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGE 716
VKR++ +ARAAESI+DGD+ NVQIRR +QWQLSQ++ AS I+PAA MHG RE LE GE
Sbjct: 646 GVKRMNALARAAESIADGDLVNVQIRRYRQWQLSQAACFASSIVPAAWMHGNREILEAGE 705
Query: 717 RNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLR 776
RNFNRFGGWLGK ST KN RLLED+H H LAS+++ L R+ LRLDY +L+L++LT+PL+
Sbjct: 706 RNFNRFGGWLGKYSTTNKNRRLLEDVHSHILASQQANLDREALRLDYLTLILRELTDPLK 765
Query: 777 VLPKDELLRKLL 788
+ KDE ++K++
Sbjct: 766 KMSKDEAVQKVV 777
>gi|224054238|ref|XP_002298160.1| predicted protein [Populus trichocarpa]
gi|222845418|gb|EEE82965.1| predicted protein [Populus trichocarpa]
Length = 550
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 382/549 (69%), Positives = 436/549 (79%), Gaps = 7/549 (1%)
Query: 1 MPQDIRKWFLKPHSKDKDNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQ 60
M +DIRKWF+K H K DNA A E P CGG E GRRKTSKYFA +KQ
Sbjct: 1 MQRDIRKWFMKAHDKGNDNAATNAEKKPPPTEPKTETPVCGGQEGSGRRKTSKYFAANKQ 60
Query: 61 KPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKADDDDDD--FVPPSVKKNSVGATPS 118
K ++ E E+LPAKRKA+ D +SV+ P KK HK DD+++D F P KKN A+PS
Sbjct: 61 KQKEDKEIEDLPAKRKAQNDGVQSVKPPPSKKVHKVDDEEEDDDFSLPK-KKND--ASPS 117
Query: 119 KKLKSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRG 178
KKLKS SGR +AQK V +++ +E+DVK TESPLKS GRGRGGRG SGAP+ GRGRGGGRG
Sbjct: 118 KKLKSSSGRGIAQKPVHVNESDEDDVKDTESPLKSGGRGRGGRGVSGAPSGGRGRGGGRG 177
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
GFMNFGE+KDPPHKGEKEVPEGAP+CL GLTFVISGTLDSLEREEAEDLIKRHGGRVTGS
Sbjct: 178 GFMNFGEKKDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 237
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKT+YLLCDEDI G KS+KAKELGTPFLTEDGLFD I +SK KA A+ +SK SVEKV
Sbjct: 238 VSKKTSYLLCDEDIEGRKSSKAKELGTPFLTEDGLFDKILSSKNSKAPAREDSKVSVEKV 297
Query: 299 AASLPKKSPQNIEAKSTS-APKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNE 357
SLPKKSPQ + KS+S A + + + AK+K Q IQ+SSL WTEKYRPK PNE
Sbjct: 298 -TSLPKKSPQKADLKSSSLMSNATHKDLGAGSQQAKQKDQAIQRSSLIWTEKYRPKVPNE 356
Query: 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLV 417
++GN LV QLH WL +WNE+F DTG K GKKQND++A+KA +LSG PG+GKTT+AKLV
Sbjct: 357 MIGNPSLVTQLHNWLKNWNEQFHDTGNKGKGKKQNDSTAKKAVLLSGPPGIGKTTSAKLV 416
Query: 418 CQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLI 477
+MLGFQAIEVNASD+RGKADAKI KGI GSNAN IKEL+SNEAL MDRSKH KTVLI
Sbjct: 417 SKMLGFQAIEVNASDNRGKADAKIFKGISGSNANCIKELISNEALGFEMDRSKHLKTVLI 476
Query: 478 MDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQE 537
MDEVDGMSAGDRGG+ADLIASIKISKIPIICICNDRYSQKLKSLVNYC L FRKP KQ+
Sbjct: 477 MDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQ 536
Query: 538 IAKRLMQIA 546
+ ++ ++
Sbjct: 537 VLFFVLSVS 545
>gi|116789971|gb|ABK25455.1| unknown [Picea sitchensis]
Length = 550
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 309/453 (68%), Positives = 369/453 (81%), Gaps = 10/453 (2%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDT------GTKRNGKKQNDASAEKA 399
WTEKYRPKTP++I+GNQ +VK +H WLAHW+E+ L T G KR G + +++KA
Sbjct: 2 WTEKYRPKTPDDIIGNQSIVKNIHDWLAHWDEQHLHTEGKESKGKKRGGGSVSSNASKKA 61
Query: 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSN 459
+LSG+PG+GKTT+A+L+ QMLGF+ IEVNASDSRGKAD+KI +G+ GS ANSIKE+VSN
Sbjct: 62 VLLSGTPGIGKTTSARLISQMLGFETIEVNASDSRGKADSKIERGMAGSTANSIKEMVSN 121
Query: 460 EALS--ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQK 517
E+LS + MD SK K+VLIMDEVDGMS GDRGG++DLIASIKISKIPIICICNDRY+QK
Sbjct: 122 ESLSRGSFMDGSKRGKSVLIMDEVDGMSGGDRGGVSDLIASIKISKIPIICICNDRYNQK 181
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
LKSLVNYC L FRKP KQ++AKRL Q+A EGL+V+E AL EL +RVNGD+RMA+NQLQ
Sbjct: 182 LKSLVNYCLPLNFRKPTKQQMAKRLCQVAELEGLKVDEAALLELGERVNGDMRMALNQLQ 241
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLV 637
YMSLS S++KY DI+ RL S KDEDI+PFTAVDKL G+ GG+LRMDER+DLSMSDPDLV
Sbjct: 242 YMSLSSSILKYADIKARLQGSKKDEDITPFTAVDKLLGYEGGRLRMDERMDLSMSDPDLV 301
Query: 638 PLLIQENYINYRPSSAGR--DEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
PLLIQENY+NY+PS+A R D R+ LIARAAESI+DGDI NVQIRR +QWQ SQ +
Sbjct: 302 PLLIQENYLNYKPSAASRDGDGSLRMDLIARAAESIADGDIINVQIRRYRQWQHSQMGAF 361
Query: 696 ASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG 755
AS IIPAA MHG RE L QGERNFNRFGGWLGKNST+GKN RLLED+H H LAS +
Sbjct: 362 ASSIIPAAFMHGPREVLVQGERNFNRFGGWLGKNSTLGKNNRLLEDVHVHFLASGTCEPT 421
Query: 756 RDTLRLDYFSLLLKQLTEPLRVLPKDELLRKLL 788
R LRLDY LL+ QLT PL+ LPK+E ++ ++
Sbjct: 422 RGALRLDYLPLLVLQLTRPLQTLPKEEAVQTVV 454
>gi|222616174|gb|EEE52306.1| hypothetical protein OsJ_34316 [Oryza sativa Japonica Group]
Length = 929
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 355/658 (53%), Positives = 418/658 (63%), Gaps = 81/658 (12%)
Query: 48 RRKTSKYFATDKQKPEDG----GEKEELPAKRKAEK------DDGKSVRSSPLKKFHKAD 97
RRKTSKYFA+ +K ED G LP KRK +K DD K + P K+ HK +
Sbjct: 47 RRKTSKYFASKTEKEEDTSAGKGTGRGLP-KRKLQKVSDELEDDMKPL---PAKEVHKEE 102
Query: 98 DDDDD--FVPPSVKKNSVGATPSKKLKSGSGRAVAQ------------------------ 131
+DDDD FV PS K+ + P K G+ A A
Sbjct: 103 EDDDDDDFVAPS-KRKTPVKPPPSKKLKGASTAEAHGKTGLDDDNEDKMDEDAKTPSKAS 161
Query: 132 ----------------------KSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAV 169
K++ +DDD EED ++ S + G +
Sbjct: 162 GSGRGRGRGRGRGGRGAGAAHGKTIGLDDDGEEDKMDEDAKTPS----KAAGRGRGGASG 217
Query: 170 GRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIK 229
GRGRGGG GFMNFGERKDPPHKGEKEVPEGAPDCL GLTFVISGTLDSLEREEA DLIK
Sbjct: 218 GRGRGGGGRGFMNFGERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIK 277
Query: 230 RHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA-LAQ 288
R+GGRVTGS+SKKTNYLL DED+ G KS KAKELG PFLTEDGLFDMIR SKP KA +A+
Sbjct: 278 RYGGRVTGSISKKTNYLLADEDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAK 337
Query: 289 AESKKSVEKVAASLPKKSPQNIEAKS----TSAPKAPIERMKTVASPAKRKGQNIQQSSL 344
+S K+ EK S K SP +E + T+ + K AS +K + + SL
Sbjct: 338 HQSDKNSEKQQKSPMKSSPVKVERRDGNQITTGKNISPKSNKGSASIDNQKVNIVDRGSL 397
Query: 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSG 404
WTEKYRPK PN+IVGNQ +VKQLH WL W ++FL +G K GKKQ D+ A+KA +LSG
Sbjct: 398 QWTEKYRPKVPNDIVGNQSMVKQLHDWLRSWEDQFLHSGQKGKGKKQADSGAKKAVLLSG 457
Query: 405 SPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA 464
PG+GKTT AK+V QMLG QAIEVNASDSRGKAD+KI KG+GGS +NSIKEL+SN L+
Sbjct: 458 PPGIGKTTTAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNSIKELISNATLNY 517
Query: 465 NMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ +R K PK VL+MDEVDGMSAGDRGG+ADLIASIK+SKIPIICICNDRYSQKLKSLVNY
Sbjct: 518 SNNRLKRPKAVLVMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNY 577
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C L FRKP KQ++ KRLM+IA EGL+ E + V+G I L
Sbjct: 578 CLLLNFRKPTKQQMGKRLMEIAKKEGLQAQECIRSAIEPAVSGSIICGF---------LD 628
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ R L S + I + +LFGFNGG+LRMDERIDLSMSDPDLVPL+IQ
Sbjct: 629 DFIICNARVGLYFSRYFKFIIDIDSTFRLFGFNGGRLRMDERIDLSMSDPDLVPLIIQ 686
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 64/75 (85%)
Query: 714 QGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTE 773
QGERNFNRFGGWLGK ST KN+RLLED H H LAS+++ L R++LRLDY +LLL+QLT+
Sbjct: 686 QGERNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTD 745
Query: 774 PLRVLPKDELLRKLL 788
PL+ +PKDE ++K++
Sbjct: 746 PLKTMPKDEAVQKVV 760
>gi|22095163|emb|CAC86668.1| replication factor C large subunit [Triticum sp.]
Length = 543
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 278/374 (74%), Positives = 326/374 (87%), Gaps = 2/374 (0%)
Query: 417 VCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476
V QMLG QAIEVNASDSRGKAD+KI KG+GGS +NSIKEL+SN L+ + +R+K PK VL
Sbjct: 1 VSQMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNSIKELISNATLNYSDNRTKKPKAVL 60
Query: 477 IMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQ 536
IMDEVDGMSAGDRGG+ADLIASIKISKIPI+CICNDRYSQKLKSLVNYC L FRKP KQ
Sbjct: 61 IMDEVDGMSAGDRGGVADLIASIKISKIPIVCICNDRYSQKLKSLVNYCLLLNFRKPTKQ 120
Query: 537 EIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLL 596
++ KRLM+IA EG++ E A+EELA+RV+GDIRMA+N LQYMSLS SV+KYDDIR RL
Sbjct: 121 QMGKRLMEIARKEGIQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIRLRLN 180
Query: 597 SSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRD 656
SS+KDEDISPFTAVDKLFGFNGG+LRMDERIDLSMSDPDLVPL+IQENYINYRPS+ G+D
Sbjct: 181 SSSKDEDISPFTAVDKLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYRPSAEGKD 240
Query: 657 E--VKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQ 714
+ VKR++ +ARAAESI+DGDI NVQIRR +QWQLSQ++ LAS I+PAALMHG RE LE
Sbjct: 241 DSGVKRMNYLARAAESIADGDIVNVQIRRYRQWQLSQAACLASSIVPAALMHGNREVLEA 300
Query: 715 GERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEP 774
GERNFNRFGGWLGK ST KN RLLED+H H LAS+++ L R+ LRLDY +LLL+QLT P
Sbjct: 301 GERNFNRFGGWLGKYSTTNKNKRLLEDVHSHILASQQANLDREALRLDYLTLLLRQLTGP 360
Query: 775 LRVLPKDELLRKLL 788
L+ +PK+E ++K++
Sbjct: 361 LKTMPKEEAVQKVV 374
>gi|147867164|emb|CAN82054.1| hypothetical protein VITISV_029381 [Vitis vinifera]
Length = 783
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 323/493 (65%), Positives = 356/493 (72%), Gaps = 54/493 (10%)
Query: 63 EDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKADDDDDDFVPPSVKKNSVGATPSKKLK 122
+D E EELPAKRK +K +S+ PP PSKK++
Sbjct: 84 KDEKEMEELPAKRKTQKGTKESLN------------------PP----------PSKKIR 115
Query: 123 SGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMN 182
+ DDE+ D K TE P+KS GRGRGGRGA PA GRGRGGGRGGFMN
Sbjct: 116 RVVDDDDDDFVLHKSDDEKVD-KDTEPPIKSGGRGRGGRGALVTPAGGRGRGGGRGGFMN 174
Query: 183 FGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKK 242
FGERKDPPHKGEKEVPEGA DCL GLTFVISGTLDSLEREEAEDLIKRHGGRVTGS
Sbjct: 175 FGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS---- 230
Query: 243 TNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASL 302
N+LLCDEDI G KS KAKELGT FLTEDGLFDMI AS KA AQ E KKS++KV +
Sbjct: 231 -NFLLCDEDIGGNKSAKAKELGTAFLTEDGLFDMIXASNHAKAPAQGEPKKSLDKVVLAT 289
Query: 303 PKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQ 362
PKKSPQ +E K + +R A+ K Q I +SLTWTEKY+PK PN+I+GNQ
Sbjct: 290 PKKSPQKVEKKVDQVVNSSGKRTVLAATTPKHIYQTIGHASLTWTEKYKPKVPNDIIGNQ 349
Query: 363 QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422
LVKQLH WLAHWNE+FL TGTK GKKQND+ A+KA +LSG+P
Sbjct: 350 SLVKQLHEWLAHWNEQFLHTGTKGKGKKQNDSGAKKAVLLSGTP---------------- 393
Query: 423 FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVD 482
VNASD+RGKADAKI KGIGGSNANSIKELVSNEAL ANMDRSKHPKTVLIMDEVD
Sbjct: 394 ----MVNASDNRGKADAKIDKGIGGSNANSIKELVSNEALGANMDRSKHPKTVLIMDEVD 449
Query: 483 GMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRL 542
GMSAGDRGG+ADLIASIKISKIPIICICNDRYSQKLKSLVNYC L FRKP KQ++AKRL
Sbjct: 450 GMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRL 509
Query: 543 MQIANAEGLEVNE 555
+Q+ANAEGL+VNE
Sbjct: 510 LQVANAEGLQVNE 522
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/192 (65%), Positives = 138/192 (71%), Gaps = 46/192 (23%)
Query: 556 IALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615
IALEELA+RVNGD+RMA+NQLQYMSLS+SVIKYDD+RQRLLSSAKDEDISPF AVDKLFG
Sbjct: 589 IALEELAERVNGDMRMALNQLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFVAVDKLFG 648
Query: 616 FNGGKLRMDERIDLSMSDPDLVPLLIQ--------------------------------- 642
FNGGKLRMDERIDLSMSDPDLVPLLIQ
Sbjct: 649 FNGGKLRMDERIDLSMSDPDLVPLLIQECLMCMNLDIEHVLMWLSSSDTWKMLNDVSGKL 708
Query: 643 -----------ENYINYRPSSAGRDE--VKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
ENYINYRP+ AG+D+ VKR+SL+ARAAESI BGDI NVQIRR +QWQL
Sbjct: 709 WEGLEGNNFPKENYINYRPTLAGKDDNGVKRMSLLARAAESIGBGDIINVQIRRYRQWQL 768
Query: 690 SQSSSLASCIIP 701
SQ+ S ASCI P
Sbjct: 769 SQAGSFASCITP 780
>gi|303283302|ref|XP_003060942.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457293|gb|EEH54592.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 949
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 272/606 (44%), Positives = 377/606 (62%), Gaps = 17/606 (2%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
GF E PP+KG K P G CL G TFV+SG LDSLER+EAED IKRHGG+VT +
Sbjct: 198 GFGGGTEMAGPPNKGRKPAPRGPDGCLEGCTFVVSGVLDSLERDEAEDFIKRHGGKVTSA 257
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA------SKPMKALAQAESK 292
VS KT YLL D +K KAK +GTP + EDGLF M+ A P+K + +
Sbjct: 258 VSGKTTYLLVGMDCGKSKYAKAKSVGTPLMDEDGLFAMVEALAEEAAKNPVKTEVEMKPA 317
Query: 293 KSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRP 352
VE +P + + + +A A + A+ A + + + + L W KY+P
Sbjct: 318 DGVEAKPEIVPAAAAKKPAPSAAAAAAAAPSQAAAAAAGAASRPKKAEDTPL-WVNKYKP 376
Query: 353 KTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTT 412
P +++GN + + L +L W+ GT ++ K ++ KA ++SG PG+GK++
Sbjct: 377 SQPAQLIGNGKNIADLRKFLQTWDALHGKDGTAKDMKGKD--KPMKAVLISGPPGIGKSS 434
Query: 413 AAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHP 472
AA ++ + LGF+ EVNASD+RGK+ I G+GG ++N+++E+V+N+A+S K
Sbjct: 435 AASIISKQLGFEVTEVNASDTRGKSSNDIRDGVGGKSSNAVREMVTNKAMSFFGGPPK-- 492
Query: 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRK 532
KTVLIMDEVDGMS GDRGG+ +LI IKISKIPIICICND+Y+QKLKSL NY D+ F +
Sbjct: 493 KTVLIMDEVDGMSGGDRGGVMELINCIKISKIPIICICNDKYNQKLKSLQNYVLDMPFSR 552
Query: 533 PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIR 592
P K +I KR++ IA EG+++NE A+E L + N DIR+ INQLQ L+ YDDI+
Sbjct: 553 PTKGQIVKRMLLIAEQEGIQMNEAAMEALIETTNNDIRLIINQLQMRRLTKQSFAYDDIK 612
Query: 593 QRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSS 652
+ KD D+ PFTAVDKL + +L + ER++L D D++PL IQENY+ YRP +
Sbjct: 613 SL---AKKDIDMGPFTAVDKLCAPDANRLTVTERLNLVFQDSDIIPLFIQENYVQYRPYA 669
Query: 653 AGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRET- 711
A +++V+RL L++ AA SIS+GD+ N IR Q W L +++ S ++PA+ M G RE
Sbjct: 670 A-KNDVERLQLLSAAATSISEGDVMNKSIRAKQNWGLMPYANIVSSVMPASTMRGSREVF 728
Query: 712 -LEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQ 770
L GERNFNRF WLGKNST GKN RLL+++H H + S K +LR Y LL
Sbjct: 729 GLHPGERNFNRFPSWLGKNSTHGKNKRLLQEVHSHAMTSEGFKADAASLREYYLPLLKLL 788
Query: 771 LTEPLR 776
T P++
Sbjct: 789 TTRPMK 794
>gi|302760479|ref|XP_002963662.1| hypothetical protein SELMODRAFT_80248 [Selaginella moellendorffii]
gi|300168930|gb|EFJ35533.1| hypothetical protein SELMODRAFT_80248 [Selaginella moellendorffii]
Length = 465
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/366 (65%), Positives = 298/366 (81%), Gaps = 6/366 (1%)
Query: 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGM 484
+++VNASDSRGKAD+KI +GIGGS +N++KE+VSN +L + ++VLIMDEVDGM
Sbjct: 1 SLQVNASDSRGKADSKIVRGIGGSTSNAVKEMVSNASLGGWAGK----QSVLIMDEVDGM 56
Query: 485 SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544
SAGDRGG+ADLIASIKISK+PIICICNDRYSQKLKSLVNYC L +RKP KQ++AKRL
Sbjct: 57 SAGDRGGVADLIASIKISKVPIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQMAKRLQD 116
Query: 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDI 604
IA +E L ++ IALEEL++R +GD+R+A+NQLQYMSL SV+KYDDI+Q ++S KDEDI
Sbjct: 117 IARSEKLNIDTIALEELSERTHGDMRLALNQLQYMSLHTSVLKYDDIKQYAVASGKDEDI 176
Query: 605 SPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDE--VKRLS 662
SPF+AVDKL GF GG+L+MD+RIDL+MSD DLVPL+IQENY+N+ PS AGRD R+
Sbjct: 177 SPFSAVDKLMGFEGGRLKMDDRIDLAMSDMDLVPLIIQENYLNFVPSGAGRDANGTARMD 236
Query: 663 LIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRF 722
L+A+AA SI+ DI NVQIRR +QWQLS+SS+ S IIPA+LMHG+RE L QGERNFNRF
Sbjct: 237 LLAQAATSIASADILNVQIRRFRQWQLSRSSAFMSSIIPASLMHGKREVLTQGERNFNRF 296
Query: 723 GGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDE 782
GGWLGKNST GK RLLED+H H L SR + R LRLDYF +L QLT+PLR++ K +
Sbjct: 297 GGWLGKNSTFGKKTRLLEDVHAHVLCSRIGEPTRRDLRLDYFPVLSTQLTQPLRIMDKSD 356
Query: 783 LLRKLL 788
+R ++
Sbjct: 357 AVRAVI 362
>gi|302785956|ref|XP_002974750.1| hypothetical protein SELMODRAFT_101808 [Selaginella moellendorffii]
gi|300157645|gb|EFJ24270.1| hypothetical protein SELMODRAFT_101808 [Selaginella moellendorffii]
Length = 468
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/366 (65%), Positives = 297/366 (81%), Gaps = 3/366 (0%)
Query: 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGM 484
+++VNASDSRGKAD+KI +GIGGS +N++KE+VSN +L +K ++VLIMDEVDGM
Sbjct: 1 SLQVNASDSRGKADSKIVRGIGGSTSNAVKEMVSNASL-GGWAGNKQKQSVLIMDEVDGM 59
Query: 485 SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544
SAGDRGG+ADLIASIK SK+PIICICNDRYSQKLKSLVNYC L +RKP KQ++AKRL
Sbjct: 60 SAGDRGGVADLIASIKTSKVPIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQMAKRLQD 119
Query: 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDI 604
IA +E L ++ IALEEL++R +GD+R+A+NQLQYMSL SV+KYDDI+Q ++S KDEDI
Sbjct: 120 IARSEKLNIDTIALEELSERTHGDMRLALNQLQYMSLHKSVLKYDDIKQYAVASGKDEDI 179
Query: 605 SPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDE--VKRLS 662
SPF+AVDKL GF GG+L+MD+RIDL+MSD DLVPL+IQENY+N+ PS AGRD R+
Sbjct: 180 SPFSAVDKLMGFEGGRLKMDDRIDLAMSDMDLVPLIIQENYLNFVPSGAGRDANGTARMD 239
Query: 663 LIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRF 722
L+A+AA SI+ DI NVQIRR +QWQLS+SS+ S IIPA+LMHG+RE L QGERNFNRF
Sbjct: 240 LLAQAATSIASADILNVQIRRFRQWQLSRSSAFMSSIIPASLMHGKREVLTQGERNFNRF 299
Query: 723 GGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDE 782
GGWLGKNST GK RLLED+H H L SR + R LRLDYF +L QLT+PLR + K +
Sbjct: 300 GGWLGKNSTFGKKTRLLEDVHAHVLCSRIGEPTRRDLRLDYFPVLSTQLTQPLRTMDKSD 359
Query: 783 LLRKLL 788
+R ++
Sbjct: 360 AVRAVI 365
>gi|255078488|ref|XP_002502824.1| predicted protein [Micromonas sp. RCC299]
gi|226518090|gb|ACO64082.1| predicted protein [Micromonas sp. RCC299]
Length = 917
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 261/595 (43%), Positives = 370/595 (62%), Gaps = 19/595 (3%)
Query: 186 RKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNY 245
R +PP+KG K P G DCL G+T V+SG LDSLEREEAED +KRHGG+VT +VS KT Y
Sbjct: 188 RAEPPNKGVKIAPRGPNDCLEGVTVVVSGVLDSLEREEAEDYVKRHGGKVTSTVSGKTTY 247
Query: 246 LLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKK 305
LL D +K KAK+ GT + EDGLF M+ A A+ + + + + AA P
Sbjct: 248 LLVGMDCGKSKYNKAKQHGTTLIDEDGLFAMVAACGEKPAVEEIKPEPAPAPAAAKSPVP 307
Query: 306 SPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLV 365
+P+ S +A A K KG++ + W KY+P P +++GN +
Sbjct: 308 TPKPSPKPSAAA-----PTAPPPAPVKKAKGED---ETPLWVNKYKPNQPAQLIGNGAKI 359
Query: 366 KQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA 425
+L +L W + L G + GK + K+ ++SG+PG+GK++AA ++ + LGF+
Sbjct: 360 AELRKFLTTWEDVHLK-GPEVKGKDK----PMKSVLISGAPGVGKSSAATIIAKQLGFEV 414
Query: 426 IEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS 485
+EVNASD+RG + + +G+GG +N+I+E+V+N A+ N K K LIMDEVDGMS
Sbjct: 415 VEVNASDTRGASGKDVKEGVGGKASNAIREMVTNRAV--NFFTGKPKKMCLIMDEVDGMS 472
Query: 486 AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQI 545
GDRGG+ +LIA IKISKIPIICICND+Y+QKLKSL NY DL F KP K +I KR+++I
Sbjct: 473 GGDRGGVQELIACIKISKIPIICICNDKYNQKLKSLQNYTMDLPFVKPTKVQILKRMLKI 532
Query: 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDIS 605
A EG+ ++E A+E L + + DIR INQLQ L+ ++DD++ + KD D+
Sbjct: 533 AQDEGITMSEAAMEALIETCSNDIRQIINQLQMRRLTKQTFEFDDVKSL---AKKDLDMG 589
Query: 606 PFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIA 665
PFTA+DKL + G L + ER++L D DL+PL +QENY+ YRP +A R++ +RL ++A
Sbjct: 590 PFTAMDKLTNRDAGLLTVTERLNLVFQDSDLIPLFVQENYLQYRPFAA-RNDAERLQIVA 648
Query: 666 RAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGW 725
AA IS GDI N +R Q W L +++ S ++PA+++ G RET + ERNFNRF GW
Sbjct: 649 NAATCISHGDIMNRSVRMKQNWGLMPYANMVSSVMPASMVRGGRETFHEYERNFNRFPGW 708
Query: 726 LGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPK 780
LGKNS+ GK RLL ++H H + S K +R DY L+ + P+ P+
Sbjct: 709 LGKNSSAGKMKRLLHEVHSHAMTSNAFKADSAGMRCDYLPLIKDLTSRPMWEPPQ 763
>gi|302853225|ref|XP_002958129.1| DNA replication factor C complex subunit 1 [Volvox carteri f.
nagariensis]
gi|300256597|gb|EFJ40860.1| DNA replication factor C complex subunit 1 [Volvox carteri f.
nagariensis]
Length = 963
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 238/549 (43%), Positives = 331/549 (60%), Gaps = 24/549 (4%)
Query: 188 DPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLL 247
+PP+ +KEVP G PDCL G TFVI+G LDSL R EAEDLIKRHGG+VT SVS KT +++
Sbjct: 202 EPPNYRKKEVPRGHPDCLTGRTFVITGILDSLMRPEAEDLIKRHGGKVTKSVSGKTAFVV 261
Query: 248 CDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKS- 306
+ K AK+ T + EDGLF +++AS + + + + +S+ +
Sbjct: 262 VGHNCGRGKYRDAKQHKTKLIDEDGLFALLKASASFAPAERPAAAAAAAAIPSSICTSNF 321
Query: 307 ---------PQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNE 357
P + P P + PA G + Q W +KY+P+ +E
Sbjct: 322 GPTAAARAGPGGAGPSAVRKPTGPYTTPQPSQPPAGGGGGGLYQ---LWVDKYKPRNSSE 378
Query: 358 IVGNQQLVKQLHTWLAHWNEKFLDTGT----KRNGKKQNDASAEKAAILSGSPGMGKTTA 413
+VGN LV L WL W + L K G K D S +KAA+LSG PG+GKT+A
Sbjct: 379 LVGNNTLVANLKQWLESWEQVHLRGAAAPTAKGGGSKPKDLS-KKAALLSGPPGIGKTSA 437
Query: 414 AKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRS-KHP 472
A ++ + GF+ +E+NASD+R K+ K+S GI G +N IKE+VSN L D KH
Sbjct: 438 AHIIAREAGFEVVEMNASDTRNKS-TKVSDGIAGKQSNVIKEMVSNTTLPGLGDAGGKHR 496
Query: 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRK 532
K +LIMDEVDGMS GDRGGI DLI +IK SKIPIICICND+Y+QKL+SL N+C +L FRK
Sbjct: 497 KQLLIMDEVDGMSGGDRGGIQDLIDTIKRSKIPIICICNDKYNQKLRSLRNHCMELEFRK 556
Query: 533 PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIR 592
P Q+I+KR+ +I EGL++N+ ++ L GD+R+ + QLQ + L + YD++R
Sbjct: 557 PTVQQISKRMSEICQKEGLQINQATMDALVSGAGGDLRLILGQLQMVRLRARALTYDEVR 616
Query: 593 QRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSS 652
+ + ++KD D+SPF +L L M +R++L +D DLVPLL+QENY+N+RP+
Sbjct: 617 GK-MGTSKDTDMSPFECARRLLEPACSLLSMGDRMELVFADMDLVPLLVQENYVNHRPTI 675
Query: 653 AGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRET- 711
A D RL +A+AA+SIS GD+ N +RR+Q W L +++ SC++P A M G RE
Sbjct: 676 AP-DLPARLRAMAKAADSISFGDVVNNTLRRSQNWSLMPFAAVMSCLLPVAYMRGPREIF 734
Query: 712 -LEQGERNF 719
L E NF
Sbjct: 735 GLYPTEMNF 743
>gi|449500927|ref|XP_002189560.2| PREDICTED: replication factor C subunit 1 [Taeniopygia guttata]
Length = 1132
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 244/652 (37%), Positives = 367/652 (56%), Gaps = 77/652 (11%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ +F R+ P G KE+P+GA +CL GLTFVI+G L+ +ER+EA+ LI+R+GG+VTG+
Sbjct: 361 AYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLECIERDEAKSLIERYGGKVTGN 420
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA----LAQAESKKS 294
VSKKTNYL+ D +K KA LGT + EDGLFD+IR K+ A+AE+KK
Sbjct: 421 VSKKTNYLVMGRDCGQSKCEKASTLGTKIIDEDGLFDLIRTMPGKKSKYELAAEAEAKK- 479
Query: 295 VEKVAASLPKKSPQNIEA-KSTSAP----------KAPIERMKTVASPAKRKG------- 336
S PKK+PQ EA K +P K+ E+ +T++S K
Sbjct: 480 ----VESKPKKTPQKAEAGKRNFSPYKREANNKKCKSTPEKGETISSVKKETAAVQKLTD 535
Query: 337 ---QNIQQSS-------------------LTWTEKYRPKTPNEIVGN---QQLVKQLHTW 371
Q +++ L W +KY+P + I+G Q +L W
Sbjct: 536 FRRQTVEEKEAPKPKGNLVSEVNEDGTERLLWVDKYKPVSLKAIIGQQGEQSCANKLLRW 595
Query: 372 LAHWNEKFLDTGTKRNGK--KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429
L +W++ L+ G + K ++D + KAA+LSG PG+GKTT A LVC+ LG+ +E+N
Sbjct: 596 LRNWHKNTLEDGQAKPSKTGSKDDGTGFKAALLSGPPGVGKTTTAALVCKELGYSYVELN 655
Query: 430 ASDSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG 487
ASD+R K K +++ + N SIK+ S + S + KH VLIMDEVDGM+
Sbjct: 656 ASDTRSKNSLKEVVAESL---NNTSIKDFYSGASSSVS---GKH---VLIMDEVDGMAGN 706
Query: 488 -DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIA 546
DRGGI +LI I+ +K+PIIC+CNDR K++SLV+YC DLRF++PR ++I +M IA
Sbjct: 707 EDRGGIQELIGLIRHTKVPIICMCNDRNHPKMRSLVHYCLDLRFQRPRLEQIKGAMMSIA 766
Query: 547 NAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISP 606
EGL++ A++E+ N DIR ++ L + YD+ + + KD + P
Sbjct: 767 FKEGLKIPPPAMQEIILAANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGP 826
Query: 607 FTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLI 664
F V K+F G ++ + ++ DL D L PL +QENY++ +P++AG + K L L+
Sbjct: 827 FDVVRKVFATGEEAARMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNLKKHLVLL 886
Query: 665 ARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGG 724
+RAA+SI DGDI + QIR Q W L + ++ + ++P LM G F F
Sbjct: 887 SRAADSICDGDIVDRQIRSKQNWNLLPTQAIYASVLPGELMRGYMS-------QFPVFPS 939
Query: 725 WLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLR 776
WLGK S+ GK+ R++++L H S +++ + T+ ++Y S L L +PL+
Sbjct: 940 WLGKFSSTGKHDRIIQELAMH--MSLRTQTCKRTVNMEYLSYLRDALVQPLK 989
>gi|326919292|ref|XP_003205915.1| PREDICTED: replication factor C subunit 1-like [Meleagris gallopavo]
Length = 1212
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 251/675 (37%), Positives = 368/675 (54%), Gaps = 77/675 (11%)
Query: 161 RGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLE 220
+ S +P R + +F R+ P G KE+P+GA +CL GLTFVI+G L+S+E
Sbjct: 425 KAESISPEDSEKRRSNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLESIE 484
Query: 221 REEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280
R+EA+ LI+R+GG+VTG+VSKKTNYL+ D +K KA LGT + EDGLFD++R
Sbjct: 485 RDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASALGTKIIDEDGLFDLVRTM 544
Query: 281 KPMKA----LAQAESKKSVEKVAASLPKKSPQNIEA--KSTSAPKAPIERMKTVASP--- 331
K+ A+ E+KK A S KK+PQ E+ ++ S K +R K+ +P
Sbjct: 545 PGKKSKYELAAETEAKK-----AESRHKKTPQKTESGKRNFSPLKREADRKKSNCTPEKG 599
Query: 332 -----------------------------AKRKGQNIQQSS------LTWTEKYRPKTPN 356
K KG + +SS L W +KY+P +
Sbjct: 600 GTFKSVKKEATAIRKLKDFEHQTVQKKEAPKSKGTLVSESSENKTETLLWVDKYKPASLK 659
Query: 357 EIVGN---QQLVKQLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPGMGKT 411
I+G Q +L WL W + G + K ++D S+ KAA+LSG PG+GKT
Sbjct: 660 AIIGQQGEQSCANKLLRWLRSWYRNTSEDGQAKTNKSGGKDDGSSFKAALLSGPPGVGKT 719
Query: 412 TAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRS 469
T A LVC+ LG+ +E+NASD+R K K +++ + N SIK S + S +
Sbjct: 720 TTASLVCKELGYSYVELNASDTRSKNSLKEVVAESL---NNTSIKGFCSGTSSSVS---G 773
Query: 470 KHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDL 528
KH VLIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR K++SLV+YC DL
Sbjct: 774 KH---VLIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDL 830
Query: 529 RFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKY 588
RF++PR ++I +M IA EGL++ A+ E+ N DIR ++ L + Y
Sbjct: 831 RFQRPRLEQIKGAMMSIAFKEGLKIPPPAMNEIILAANQDIRQVLHNLNMWCAKDKSLTY 890
Query: 589 DDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYI 646
D+ + + KD + PF V K+F G ++ + ++ DL D L PL +QENY+
Sbjct: 891 DEAKTDAGRAKKDIKLGPFDVVRKVFAAGEEASRMSLIDKSDLFFHDYSLAPLFVQENYV 950
Query: 647 NYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMH 706
+ +P++AG D K L L++RAA+SI DGD+ + QIR Q W L + ++ S ++P LM
Sbjct: 951 HVKPAAAGGDLKKHLMLLSRAADSICDGDLVDKQIRTKQNWNLLPTQAIYSSVLPGELMR 1010
Query: 707 GQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSL 766
G F F WLGK S+ GK+ R++++L H S +++ + T+ ++Y S
Sbjct: 1011 GYMS-------QFPVFPSWLGKFSSTGKHERIIQELAMH--MSLRTQACKRTVNMEYLSH 1061
Query: 767 LLKQLTEPLRVLPKD 781
L L +PL+ D
Sbjct: 1062 LRDALIQPLKAFGAD 1076
>gi|1399917|gb|AAC60361.1| replication factor C large subunit [Anas platyrhynchos]
Length = 1145
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 245/652 (37%), Positives = 366/652 (56%), Gaps = 77/652 (11%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ +F R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 376 AYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 435
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA----LAQAESKKS 294
VSKKTNYL+ D +K KA LGT + EDGLFD++R K+ A++E+KK+
Sbjct: 436 VSKKTNYLVMGRDCGQSKCEKASALGTKIIDEDGLFDLVRTMPGKKSKYELAAESEAKKT 495
Query: 295 VEKVAASLPKKSPQNIEA--KSTSAPKAPIERMKTVASPAK--------------RKGQN 338
S KK+PQ EA KS S K + K ++P K RK +
Sbjct: 496 -----ESRHKKTPQKTEASRKSFSPLKREADIKKRNSTPEKGATFKSVKKETAAVRKLTD 550
Query: 339 IQQSS------------------------LTWTEKYRPKTPNEIVGN---QQLVKQLHTW 371
+Q + L W +KY+P + I+G Q +L W
Sbjct: 551 FKQQAVEKKEVPEPKGNLVSESNENGTERLLWVDKYKPTSLKAIIGQQGEQSCANKLLRW 610
Query: 372 LAHWNEKFLDTGTKRNGK--KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429
L +W++ + G + K ++D + KAA+LSG PG+GKTT A LVC+ LG+ +E+N
Sbjct: 611 LRNWHKNTSEDGQAKASKLGGKDDGISSKAALLSGPPGVGKTTTAALVCKELGYSYVELN 670
Query: 430 ASDSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG 487
ASD+R K K +++ + N SIK+ S + S + KH VLIMDEVDGM+
Sbjct: 671 ASDTRSKNSLKEVVAESL---NNTSIKDFCSGTSSSVS---GKH---VLIMDEVDGMAGN 721
Query: 488 -DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIA 546
DRGGI +LI+ IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I +M IA
Sbjct: 722 EDRGGIQELISLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRLEQIKGAMMSIA 781
Query: 547 NAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISP 606
EGL++ A+ E+ N DIR ++ L + YD+ + + KD + P
Sbjct: 782 FKEGLKIPPPAMHEIILAANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGP 841
Query: 607 FTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLI 664
F V K+F G ++ + ++ DL D L PL +QENY++ + ++AG D K L L+
Sbjct: 842 FDVVRKVFAAGEEASRMSLIDKSDLFFHDYSLAPLFVQENYVHVKTAAAGGDLKKHLMLL 901
Query: 665 ARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGG 724
+RAA+SI DGD+ + QIR Q W L + ++ S ++P LM G F F
Sbjct: 902 SRAADSICDGDLVDRQIRSKQNWNLLPTQAIYSSVLPGELMRGYMS-------QFPVFPS 954
Query: 725 WLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLR 776
WLGK S+ GK+ R++++L H S ++++ + T+ ++Y S L L +PL+
Sbjct: 955 WLGKFSSTGKHERIVQELAMH--MSLRTQMCKRTVNMEYLSYLRDALVQPLK 1004
>gi|57530056|ref|NP_001006456.1| replication factor C subunit 1 [Gallus gallus]
gi|53130644|emb|CAG31651.1| hypothetical protein RCJMB04_9c6 [Gallus gallus]
Length = 1147
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 240/652 (36%), Positives = 365/652 (55%), Gaps = 77/652 (11%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ +F R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 378 AYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 437
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA----LAQAESKKS 294
VSKKTNYL+ D +K KA LGT + EDGLFD++R K+ A+ E+KK+
Sbjct: 438 VSKKTNYLVMGRDCGQSKCEKASTLGTKIIDEDGLFDLVRTMPGKKSKYELAAETEAKKT 497
Query: 295 VEKVAASLPKKSPQNIEA--KSTSAPKAPIERMKTVASP--------AKRKGQNIQQ--- 341
S KK+PQ E+ ++ S K +R K+ +P K++ IQ+
Sbjct: 498 -----ESRHKKTPQKTESGKRNFSPLKREADRKKSNHTPEKGGTFKSVKKEATAIQKLKD 552
Query: 342 ---------------------------SSLTWTEKYRPKTPNEIVGN---QQLVKQLHTW 371
+L W +KY+P + I+G Q +L W
Sbjct: 553 FEHQTVEKKEAPKPKGNFVSERSEDRTETLLWVDKYKPVSLKAIIGQQGEQSCANKLLRW 612
Query: 372 LAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429
L W++ + G + K ++D ++ KAA+LSG PG+GKTT A LVC+ LG+ +E+N
Sbjct: 613 LRSWHKNTSEDGQAKTNKSGGKDDGASFKAALLSGPPGVGKTTTASLVCKELGYSYVELN 672
Query: 430 ASDSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG 487
ASD+R K K +++ + N SIK+ S + S + KH VLIMDEVDGM+
Sbjct: 673 ASDTRSKNSLKEVVAESL---NNTSIKDFCSGTSSSVS---GKH---VLIMDEVDGMAGN 723
Query: 488 -DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIA 546
DRGGI +LI I+ +K+PIIC+CNDR K++SLV+YC DLRF++PR ++I +M IA
Sbjct: 724 EDRGGIQELIGLIRHTKVPIICMCNDRNHPKIRSLVHYCFDLRFQRPRLEQIKGAMMSIA 783
Query: 547 NAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISP 606
EGL++ A+ E+ N DIR ++ L + YD+ + + KD + P
Sbjct: 784 FKEGLKIPPPAMNEIILAANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGP 843
Query: 607 FTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLI 664
F V K+F G ++ + ++ DL D L PL +QENY++ +P++AG D K L L+
Sbjct: 844 FDVVRKVFAAGEEASRMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGDLKKHLMLL 903
Query: 665 ARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGG 724
+RAA+SI DGD+ + QIR Q W L + ++ S ++P L+ G F F
Sbjct: 904 SRAADSICDGDLVDKQIRTKQNWNLLPTQAIYSSVLPGELIRGYMA-------QFPVFPN 956
Query: 725 WLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLR 776
WLGK S+ GK+ R++++L H S +++ + T+ ++Y S L L +PL+
Sbjct: 957 WLGKFSSTGKHERIIQELAMH--MSLRTQACKRTVNMEYLSHLRDALIQPLK 1006
>gi|156359338|ref|XP_001624727.1| predicted protein [Nematostella vectensis]
gi|156211524|gb|EDO32627.1| predicted protein [Nematostella vectensis]
Length = 793
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 238/638 (37%), Positives = 356/638 (55%), Gaps = 58/638 (9%)
Query: 177 RGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVT 236
+ G+ +F R+ P G KE+P+GA +C GLTFV++G LDS+ER+ A+DLI+R+GG+VT
Sbjct: 27 KSGYRSFMSREGPKALGSKEIPQGAENCFEGLTFVVTGVLDSIERDHAQDLIQRYGGKVT 86
Query: 237 GSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR---------------ASK 281
GSVSKKT+YLL D +K +KA+ LGT L ED D+IR + +
Sbjct: 87 GSVSKKTSYLLVGRDAGASKLSKAQTLGTKQLDEDAFLDLIRNTPGKKSKHEQPDTPSKQ 146
Query: 282 PMKALA---QAESKKSVEKVAASLPKKSPQNIEAKSTSAPK-APIERMKT---------- 327
P KA Q+ + S ++ S S + + T P +PI + +
Sbjct: 147 PKKAKPSKQQSPTASSQDQAGNSQQTASQSSTSSPLTQTPTGSPISLVYSACVLYTLLNK 206
Query: 328 VASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQ---QLVKQLHTWLAHWNEKFLDTGT 384
VA +N+Q L W +KY+P +I+G Q +++L W+ +W++ T
Sbjct: 207 VAPNIYSLSKNLQYLYLMWVDKYKPSGIKQIIGQQGDKSNMRKLLNWVRNWHKNRTKTLP 266
Query: 385 KRN-GKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISK 443
K + K D ++ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K +
Sbjct: 267 KSSFFNKDTDGASLKAALLSGPPGVGKTTTATLVCQELGYSYVEMNASDARSKKTLE--- 323
Query: 444 GIGGSNANSIKELVSNEALSA----NMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIAS 498
+ E +SN+++ A N+ K VL+MDEVDGM+ DRGG+ +LI+
Sbjct: 324 -------QVVSESLSNKSMDAFVGSNLAAKSGLKHVLLMDEVDGMAGSEDRGGMQELISL 376
Query: 499 IKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIAL 558
IK SKIPIIC+CNDR SQK++SL NYC DLRF +PR ++I +M IA EG+++ A+
Sbjct: 377 IKTSKIPIICMCNDRNSQKIRSLANYCFDLRFSRPRVEQIKGAMMSIAYKEGIKIPPPAM 436
Query: 559 EELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF-GFN 617
+++ N DIR ++ + + + + YD +Q ++ KD + PF A+ KL G +
Sbjct: 437 DQIIQGANQDIRQVLHNMSMWTATNKTLTYDQAKQEASNAQKDIKLGPFDAIRKLLSGSD 496
Query: 618 GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIF 677
KL + ++ DL D L+PL +QENY+ PS A D K L L++R A+SI DGD+
Sbjct: 497 SSKLSLKDKSDLFFCDYSLMPLFVQENYLMVSPSQASGDLKKTLDLVSRTADSICDGDLV 556
Query: 678 NVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLR 737
+ QIR N W L ++ S +IP+ + G G+R F WLGKNS G+ R
Sbjct: 557 SRQIRSNSSWSLLPMQAMLSAVIPSYFISG-----GMGQR--IDFPQWLGKNSKQGRLDR 609
Query: 738 LLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
+L++L H S + + ++ L+Y L + LT PL
Sbjct: 610 ILQELQAHMRISTSA--DKSSINLEYIPHLRQALTTPL 645
>gi|426344090|ref|XP_004038609.1| PREDICTED: replication factor C subunit 1 [Gorilla gorilla gorilla]
Length = 1148
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 245/682 (35%), Positives = 368/682 (53%), Gaps = 75/682 (10%)
Query: 147 TESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLG 206
T++P K+ + + S +P + + ++ R+ P G KE+P+GA +CL
Sbjct: 351 TKTPKKT--KSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLE 408
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT
Sbjct: 409 GLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTK 468
Query: 267 FLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKA------ 320
+ EDGL ++IR K+ + + ++K + L + +N++ K +P
Sbjct: 469 IIDEDGLLNLIRTMPGKKSKYEIAVETEMKK-ESKLERTPQKNVQGKRKISPSKKESESK 527
Query: 321 ---PIERMKTVASPAKR-----------------------KGQNIQQSS-------LTWT 347
P + ++A K+ K +N+ S L W
Sbjct: 528 KSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWV 587
Query: 348 EKYRPKTPNEIVG---NQQLVKQLHTWLAHW------NEKFLDTGTKRNGKKQNDASAEK 398
+KY+P + I+G +Q +L WL +W ++K K +GK +D S+ K
Sbjct: 588 DKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSGK--DDGSSFK 645
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKEL 456
AA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K+ K +++ + N SIK
Sbjct: 646 AALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESL---NNTSIKGF 702
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYS 515
SN A S S K LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR
Sbjct: 703 YSNGAAS-----SVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNH 757
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
K++SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++
Sbjct: 758 PKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHN 817
Query: 576 LQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSD 633
L + YD + + KD + PF K+F G + + ++ DL D
Sbjct: 818 LSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHD 877
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
+ PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L +
Sbjct: 878 YSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQ 937
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSK 753
++ + ++P LM G F F WLGK+S+ GK+ R+++DL H S ++
Sbjct: 938 AIYASVLPGELMRGYM-------TQFPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTY 988
Query: 754 LGRDTLRLDYFSLLLKQLTEPL 775
+ T+ +DY SLL L +PL
Sbjct: 989 SSKRTVNMDYLSLLRDALVQPL 1010
>gi|410218|gb|AAA16121.1| replication factor C large subunit [Homo sapiens]
Length = 1148
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 245/682 (35%), Positives = 368/682 (53%), Gaps = 75/682 (10%)
Query: 147 TESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLG 206
T++P K+ + + S +P + + ++ R+ P G KE+P+GA +CL
Sbjct: 351 TKTPKKT--KSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLE 408
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT
Sbjct: 409 GLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTK 468
Query: 267 FLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKA------ 320
+ EDGL ++IR K+ + + ++K + L + +N++ K +P
Sbjct: 469 IIDEDGLLNLIRTMPGKKSKYEIAVETEMKK-ESKLERTPQKNVQGKRKISPSKKESESK 527
Query: 321 ---PIERMKTVASPAKR-----------------------KGQNIQQSS-------LTWT 347
P + ++A K+ K +N+ S L W
Sbjct: 528 KSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWV 587
Query: 348 EKYRPKTPNEIVG---NQQLVKQLHTWLAHW------NEKFLDTGTKRNGKKQNDASAEK 398
+KY+P + I+G +Q +L WL +W ++K K +GK +D S+ K
Sbjct: 588 DKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSGK--DDGSSFK 645
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKEL 456
AA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K+ K +++ + N SIK
Sbjct: 646 AALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESL---NNTSIKGF 702
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYS 515
SN A S S K LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR
Sbjct: 703 YSNGAAS-----SVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNH 757
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
K++SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++
Sbjct: 758 PKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHN 817
Query: 576 LQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSD 633
L + YD + + KD + PF K+F G + + ++ DL D
Sbjct: 818 LSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHD 877
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
+ PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L +
Sbjct: 878 YSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQ 937
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSK 753
++ + ++P LM G F F WLGK+S+ GK+ R+++DL H S ++
Sbjct: 938 AIYASVLPGELMRGYM-------TQFPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTY 988
Query: 754 LGRDTLRLDYFSLLLKQLTEPL 775
+ T+ +DY SLL L +PL
Sbjct: 989 SSKRTVNMDYLSLLRDALVQPL 1010
>gi|325296984|ref|NP_001191676.1| replication factor C subunit 1 isoform 2 [Homo sapiens]
gi|56757608|sp|P35251.4|RFC1_HUMAN RecName: Full=Replication factor C subunit 1; AltName: Full=Activator
1 140 kDa subunit; Short=A1 140 kDa subunit; AltName:
Full=Activator 1 large subunit; AltName: Full=Activator 1
subunit 1; AltName: Full=DNA-binding protein PO-GA;
AltName: Full=Replication factor C 140 kDa subunit;
Short=RF-C 140 kDa subunit; Short=RFC140; AltName:
Full=Replication factor C large subunit
gi|52632416|gb|AAH35297.1| Replication factor C (activator 1) 1, 145kDa [Homo sapiens]
gi|119613329|gb|EAW92923.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_b [Homo
sapiens]
gi|158256656|dbj|BAF84301.1| unnamed protein product [Homo sapiens]
Length = 1148
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 245/682 (35%), Positives = 368/682 (53%), Gaps = 75/682 (10%)
Query: 147 TESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLG 206
T++P K+ + + S +P + + ++ R+ P G KE+P+GA +CL
Sbjct: 351 TKTPKKT--KSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLE 408
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT
Sbjct: 409 GLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTK 468
Query: 267 FLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKA------ 320
+ EDGL ++IR K+ + + ++K + L + +N++ K +P
Sbjct: 469 IIDEDGLLNLIRTMPGKKSKYEIAVETEMKK-ESKLERTPQKNVQGKRKISPSKKESESK 527
Query: 321 ---PIERMKTVASPAKR-----------------------KGQNIQQSS-------LTWT 347
P + ++A K+ K +N+ S L W
Sbjct: 528 KSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWV 587
Query: 348 EKYRPKTPNEIVG---NQQLVKQLHTWLAHW------NEKFLDTGTKRNGKKQNDASAEK 398
+KY+P + I+G +Q +L WL +W ++K K +GK +D S+ K
Sbjct: 588 DKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSGK--DDGSSFK 645
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKEL 456
AA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K+ K +++ + N SIK
Sbjct: 646 AALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESL---NNTSIKGF 702
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYS 515
SN A S S K LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR
Sbjct: 703 YSNGAAS-----SVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNH 757
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
K++SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++
Sbjct: 758 PKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHN 817
Query: 576 LQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSD 633
L + YD + + KD + PF K+F G + + ++ DL D
Sbjct: 818 LSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHD 877
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
+ PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L +
Sbjct: 878 YSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQ 937
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSK 753
++ + ++P LM G F F WLGK+S+ GK+ R+++DL H S ++
Sbjct: 938 AIYASVLPGELMRGYM-------TQFPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTY 988
Query: 754 LGRDTLRLDYFSLLLKQLTEPL 775
+ T+ +DY SLL L +PL
Sbjct: 989 SSKRTVNMDYLSLLRDALVQPL 1010
>gi|417413535|gb|JAA53090.1| Putative replication factor c subunit rfc1 large subunit, partial
[Desmodus rotundus]
Length = 1140
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 250/677 (36%), Positives = 370/677 (54%), Gaps = 61/677 (9%)
Query: 143 DVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAP 202
++K+T+SP K + + S +P R + ++ R+ P G KE+P+GA
Sbjct: 344 ELKETKSPKKM--KSSPTKKESVSPEDSEKRRTNYQAYRSYLNREGPKALGSKEIPKGAE 401
Query: 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKE 262
+CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +K KA
Sbjct: 402 NCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKRDKAAT 461
Query: 263 LGTPFLTEDGLFDMIRASKPMKA----LAQAESKKSVEKVAASLPKK-------SPQNIE 311
LGT + EDGL D+IR K+ +AE K K+ + PK SP E
Sbjct: 462 LGTKIIDEDGLLDLIRTMPGKKSKYEIAVEAEMNKEKSKLQRTPPKNDQGKRKISPTKNE 521
Query: 312 AKSTSAPKAP-----IERMKTVASPAKR----KGQNIQQSS---------------LTWT 347
++S P ++ +K S +R K Q +++S L W
Sbjct: 522 SESKKCKLTPKKDVSVKSVKKETSAFQRGLDFKEQMAEETSGDSRARQSAENTVADLLWV 581
Query: 348 EKYRPKTPNEIV---GNQQLVKQLHTWLAHWNEK-FLDTGTKRNGK--KQNDASAEKAAI 401
+KY+P + I+ G+Q +L WL +W++ D + GK ++D S+ KAA+
Sbjct: 582 DKYKPASLKAIIGQQGDQSCANKLLRWLQNWHKSPSEDQRHAKFGKFAGKDDGSSFKAAL 641
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
LSG PG+GKTT A LVCQ LG+ +E+NASD+R K K SN SIK S+ A
Sbjct: 642 LSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKEIVAESLSN-TSIKGFYSSGA 700
Query: 462 LSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
+ R LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR K++S
Sbjct: 701 APSGSTRH-----ALIMDEVDGMAGSEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRS 755
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
LV++C DLRF++PR ++I ++ +A EGL++ A+ E+ N DIR ++ L S
Sbjct: 756 LVHHCFDLRFQRPRVEQIKAAMLSVAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWS 815
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVP 638
+ YD + + KD + PF K+F G + + ++ DL D + P
Sbjct: 816 AQSKALTYDQAKADSHRAKKDVKLGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAP 875
Query: 639 LLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASC 698
L +QENY++ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L + ++ +
Sbjct: 876 LFVQENYVHVKPMAAGGDMKKHLMLLSRAADSICDGDLVDRQIRSQQNWSLLPTQAIYAS 935
Query: 699 IIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDT 758
++P LM G +L Q F F WLGK+S+ GK+ RL++DL H S ++ + T
Sbjct: 936 VLPGELMRG---SLSQ----FPAFPSWLGKHSSTGKHDRLVQDLTLH--MSLRTYSSKRT 986
Query: 759 LRLDYFSLLLKQLTEPL 775
+ +DY S + L PL
Sbjct: 987 VNMDYLSHIRDALVRPL 1003
>gi|30353858|gb|AAH51786.1| RFC1 protein [Homo sapiens]
gi|167774195|gb|ABZ92532.1| replication factor C (activator 1) 1, 145kDa [synthetic construct]
Length = 1148
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 245/682 (35%), Positives = 368/682 (53%), Gaps = 75/682 (10%)
Query: 147 TESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLG 206
T++P K+ + + S +P + + ++ R+ P G KE+P+GA +CL
Sbjct: 351 TKTPKKT--KSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLE 408
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT
Sbjct: 409 GLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTK 468
Query: 267 FLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKA------ 320
+ EDGL ++IR K+ + + ++K + L + +N++ K +P
Sbjct: 469 IIDEDGLLNLIRTMPGKKSKYEIAVETEMKK-ESKLERTPQKNVQGKRKISPSKKESESK 527
Query: 321 ---PIERMKTVASPAKR-----------------------KGQNIQQSS-------LTWT 347
P + ++A K+ K +N+ S L W
Sbjct: 528 KSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDNKARNLADDSSENKVENLLWV 587
Query: 348 EKYRPKTPNEIVG---NQQLVKQLHTWLAHW------NEKFLDTGTKRNGKKQNDASAEK 398
+KY+P + I+G +Q +L WL +W ++K K +GK +D S+ K
Sbjct: 588 DKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSGK--DDGSSFK 645
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKEL 456
AA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K+ K +++ + N SIK
Sbjct: 646 AALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESL---NNTSIKGF 702
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYS 515
SN A S S K LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR
Sbjct: 703 YSNGAAS-----SVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNH 757
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
K++SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++
Sbjct: 758 PKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHN 817
Query: 576 LQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSD 633
L + YD + + KD + PF K+F G + + ++ DL D
Sbjct: 818 LSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHD 877
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
+ PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L +
Sbjct: 878 YSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQ 937
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSK 753
++ + ++P LM G F F WLGK+S+ GK+ R+++DL H S ++
Sbjct: 938 AIYASVLPGELMRGYM-------TQFPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTY 988
Query: 754 LGRDTLRLDYFSLLLKQLTEPL 775
+ T+ +DY SLL L +PL
Sbjct: 989 SSKRTVNMDYLSLLRDALVQPL 1010
>gi|189339249|ref|NP_445999.1| replication factor C (activator 1) 1 [Rattus norvegicus]
Length = 1131
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 234/640 (36%), Positives = 352/640 (55%), Gaps = 66/640 (10%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+EREEA+ LI+R+GG+VTG+
Sbjct: 376 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGN 435
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKT+YL+ D +KS KA LGT L EDGL D+IR K+ + ++ ++K
Sbjct: 436 VSKKTSYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGKKSKYEIAAEAEMKKE 495
Query: 299 AASLPKKSPQNIEAKSTSAP-KAPIERMKTVASPAKRKGQNI------------------ 339
+ L + +N + K +P K +E K+ +P K +
Sbjct: 496 KSKLERTPQKNDQGKRKLSPTKRELEPKKSKLTPLKHSPRKAVKEEERVCPRGLDAKEPH 555
Query: 340 ------QQSSLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHWNE----------KFL 380
++ L W +KY+P + I+ G+Q +L WL +W++ KF
Sbjct: 556 GSHSASREECLLWVDKYKPTSLKNIIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAAKFG 615
Query: 381 DTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK 440
+K +D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K K
Sbjct: 616 KVASK------DDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLK 669
Query: 441 --ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIA 497
+++ + N SIK ++ A + R LIMDEVDGM+ DRGGI +LI
Sbjct: 670 AIVAESL---NNTSIKGFYTSGASPSVSARH-----ALIMDEVDGMAGNEDRGGIQELIG 721
Query: 498 SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIA 557
IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I ++ IA EGL++ A
Sbjct: 722 LIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPA 781
Query: 558 LEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--G 615
+ E+ N D+R ++ L V+ YD + + KD + PF K+F G
Sbjct: 782 MNEIILGANQDVRQVLHNLSMWCAQSKVLTYDQAKADSQRAKKDIRLGPFDVTRKVFAAG 841
Query: 616 FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGD 675
+ + ++ DL D + PL +QENY++ +P +AG D K L L++RAA+SI DGD
Sbjct: 842 EETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGD 901
Query: 676 IFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKN 735
+ + QIR Q W L + ++ + ++P LM G F F WLGK+S+MGK+
Sbjct: 902 LVDNQIRSKQNWSLLPTQAIYASVVPGELMRGYMS-------QFPSFPSWLGKHSSMGKH 954
Query: 736 LRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
R ++DL H S ++ + T+ +DY S + L PL
Sbjct: 955 DRTVQDLSLH--MSLRTYSSKRTVNMDYLSHIRDALVRPL 992
>gi|32528306|ref|NP_002904.3| replication factor C subunit 1 isoform 1 [Homo sapiens]
gi|30354564|gb|AAH51751.1| Replication factor C (activator 1) 1, 145kDa [Homo sapiens]
gi|46430941|gb|AAS94325.1| replication factor C (activator 1) 1, 145kDa [Homo sapiens]
gi|119613330|gb|EAW92924.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_c [Homo
sapiens]
gi|168275744|dbj|BAG10592.1| replication factor C subunit 1 [synthetic construct]
Length = 1147
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 246/682 (36%), Positives = 369/682 (54%), Gaps = 76/682 (11%)
Query: 147 TESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLG 206
T++P K+ + + S +P + + ++ R+ P G KE+P+GA +CL
Sbjct: 351 TKTPKKT--KSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLE 408
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT
Sbjct: 409 GLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTK 468
Query: 267 FLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKA------ 320
+ EDGL ++IR K+ + + ++K + L + +N++ K +P
Sbjct: 469 IIDEDGLLNLIRTMPGKKSKYEIAVETEMKK-ESKLERTPQKNVQGKRKISPSKKESESK 527
Query: 321 ---PIERMKTVASPAKR-----------------------KGQNIQQSS-------LTWT 347
P + ++A K+ K +N+ S L W
Sbjct: 528 KSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWV 587
Query: 348 EKYRPKTPNEIVG---NQQLVKQLHTWLAHW------NEKFLDTGTKRNGKKQNDASAEK 398
+KY+P + I+G +Q +L WL +W ++K G K +GK +D S+ K
Sbjct: 588 DKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAKFG-KFSGK--DDGSSFK 644
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKEL 456
AA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K+ K +++ + N SIK
Sbjct: 645 AALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESL---NNTSIKGF 701
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYS 515
SN A S S K LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR
Sbjct: 702 YSNGAAS-----SVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNH 756
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
K++SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++
Sbjct: 757 PKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHN 816
Query: 576 LQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSD 633
L + YD + + KD + PF K+F G + + ++ DL D
Sbjct: 817 LSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHD 876
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
+ PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L +
Sbjct: 877 YSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQ 936
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSK 753
++ + ++P LM G F F WLGK+S+ GK+ R+++DL H S ++
Sbjct: 937 AIYASVLPGELMRGYM-------TQFPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTY 987
Query: 754 LGRDTLRLDYFSLLLKQLTEPL 775
+ T+ +DY SLL L +PL
Sbjct: 988 SSKRTVNMDYLSLLRDALVQPL 1009
>gi|119613328|gb|EAW92922.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_a [Homo
sapiens]
Length = 1032
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 240/650 (36%), Positives = 356/650 (54%), Gaps = 73/650 (11%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 265 AYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGN 324
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT + EDGL ++IR K+ + + ++K
Sbjct: 325 VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGKKSKYEIAVETEMKK- 383
Query: 299 AASLPKKSPQNIEAKSTSAPKA---------PIERMKTVASPAKR--------------- 334
+ L + +N++ K +P P + ++A K+
Sbjct: 384 ESKLERTPQKNVQGKRKISPSKKESESKKSRPTSKRDSLAKTIKKETDVFWKSLDFKEQV 443
Query: 335 --------KGQNIQQSS-------LTWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHW- 375
K +N+ S L W +KY+P + I+G +Q +L WL +W
Sbjct: 444 AEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQ 503
Query: 376 -----NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
++K K +GK +D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NA
Sbjct: 504 KSSSEDKKHAAKFGKFSGK--DDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNA 561
Query: 431 SDSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG- 487
SD+R K+ K +++ + N SIK SN A S S K LIMDEVDGM+
Sbjct: 562 SDTRSKSSLKAIVAESL---NNTSIKGFYSNGAAS-----SVSTKHALIMDEVDGMAGNE 613
Query: 488 DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
DRGGI +LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I +M IA
Sbjct: 614 DRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAF 673
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPF 607
EGL++ A+ E+ N DIR ++ L + YD + + KD + PF
Sbjct: 674 KEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPF 733
Query: 608 TAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIA 665
K+F G + + ++ DL D + PL +QENYI+ +P +AG D K L L++
Sbjct: 734 DVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLS 793
Query: 666 RAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGW 725
RAA+SI DGD+ + QIR Q W L + ++ + ++P LM G F F W
Sbjct: 794 RAADSICDGDLVDSQIRSKQNWSLLPAQAIYASVLPGELMRGYM-------TQFPTFPSW 846
Query: 726 LGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
LGK+S+ GK+ R+++DL H S ++ + T+ +DY SLL L +PL
Sbjct: 847 LGKHSSTGKHDRIVQDLALH--MSLRTYSSKRTVNMDYLSLLRDALVQPL 894
>gi|148705785|gb|EDL37732.1| replication factor C 1, isoform CRA_a [Mus musculus]
Length = 1160
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 231/636 (36%), Positives = 357/636 (56%), Gaps = 59/636 (9%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 408 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 467
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT L EDGL D+IR ++ + ++ ++K
Sbjct: 468 VSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGKRSKYEMAAEAEMKKE 527
Query: 299 AASLPKKSPQNIEAKSTSAP----------------KAPIERMKTVASPAKRKGQNIQQS 342
+ L + +N + K +P +P++ +K AS R G +++++
Sbjct: 528 KSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPR-GLDVKET 586
Query: 343 ----------SLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHWNEKFLDTGTKRNGK 389
L W +KY+P + I+ G+Q +L WL +W++ + K++ K
Sbjct: 587 HGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPE--EKKHAK 644
Query: 390 -----KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--IS 442
++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K K ++
Sbjct: 645 FGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVA 704
Query: 443 KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKI 501
+ + N SIK ++ A + R LIMDEVDGM+ DRGGI +LI IK
Sbjct: 705 ESL---NNTSIKGFYTSGAAPSVSARH-----ALIMDEVDGMAGNEDRGGIQELIGLIKH 756
Query: 502 SKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEEL 561
+KIPIIC+CNDR K++SLV+YC DLRF++PR ++I ++ IA EGL++ A+ E+
Sbjct: 757 TKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEI 816
Query: 562 ADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGG 619
N D+R ++ L + YD + + KD + PF K+F G
Sbjct: 817 ILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETA 876
Query: 620 KLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNV 679
+ + ++ DL D + PL +QENY++ +P +AG D K L L++RAA+SI DGD+ +
Sbjct: 877 HMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDN 936
Query: 680 QIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLL 739
QIR Q W L + ++ + ++P LM G F F WLGK+S+ GK+ R++
Sbjct: 937 QIRSKQNWSLLPTQAIYASVLPGELMRGYMT-------QFPSFPSWLGKHSSTGKHDRIV 989
Query: 740 EDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
+DL H S ++ + T+ +DY S + L PL
Sbjct: 990 QDLSLH--MSLRTYSSKRTVNMDYLSHIRDALVRPL 1023
>gi|350587456|ref|XP_003128976.3| PREDICTED: replication factor C subunit 1 [Sus scrofa]
Length = 1207
Score = 390 bits (1003), Expect = e-105, Method: Compositional matrix adjust.
Identities = 254/686 (37%), Positives = 375/686 (54%), Gaps = 74/686 (10%)
Query: 143 DVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAP 202
++K+T +P K +G + S +P R + ++ R+ P G KE+P+GA
Sbjct: 408 ELKETRTPKKI--KGSPAKKESISPEDSEKRRTNYQAYRSYLNREGPKALGSKEIPKGAE 465
Query: 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKE 262
+CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA
Sbjct: 466 NCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSGKAAA 525
Query: 263 LGTPFLTEDGLFDMIRASKPMKA----LAQAESKKSVEKVAASLPKK-------SPQNIE 311
LGT + EDGL ++IR K+ +AE KK K+ + KK SP E
Sbjct: 526 LGTKIIDEDGLLNLIRTMPGKKSKYEIAVEAEMKKEKSKLERTPQKKDQGKRKVSPTKKE 585
Query: 312 AKSTSAPKAPIERMKTVASPAK-----RKGQNIQQS------------------------ 342
++S + P +R ++ S K RKG + ++
Sbjct: 586 SESKKCKQTP-KRESSINSIKKETSVFRKGLDFKEQVAEETDGDSRARNLADDSSENKVE 644
Query: 343 SLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHWNEKFLDTGTKRNGK-----KQNDA 394
+L W +KY+P + I+ G+Q +L WL +W+ K KR K ++D
Sbjct: 645 NLLWVDKYKPASLKTIIGQQGDQSCANKLLRWLQNWH-KSPSEDKKRAAKFGKFAGKDDG 703
Query: 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANS 452
S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K K I++ + N S
Sbjct: 704 SSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKEIIAESL---NNTS 760
Query: 453 IKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICN 511
IK S+ A A+ +KH LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CN
Sbjct: 761 IKGFYSSGA--AHSVSTKH---ALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCN 815
Query: 512 DRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571
DR K++SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR
Sbjct: 816 DRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQ 875
Query: 572 AINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDL 629
++ L + YD + + KD + PF K+F G + + ++ DL
Sbjct: 876 VLHNLSMWCARSKALTYDQAKADSHRAKKDIKLGPFDVARKVFVTGEETAHMSLMDKSDL 935
Query: 630 SMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
D + PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L
Sbjct: 936 FFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDRQIRNKQNWSL 995
Query: 690 SQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLAS 749
+ ++ + ++P LM G F F WLGK+S+ GK+ R+++DL H S
Sbjct: 996 LPTQAIYASVLPGELMRGYMT-------QFPSFPSWLGKHSSAGKHDRIVQDLALH--MS 1046
Query: 750 RKSKLGRDTLRLDYFSLLLKQLTEPL 775
++ + T+ +DY S + L +PL
Sbjct: 1047 LRTYSSKRTVNMDYLSHIRDALVQPL 1072
>gi|426232162|ref|XP_004010103.1| PREDICTED: replication factor C subunit 1 [Ovis aries]
Length = 1390
Score = 390 bits (1003), Expect = e-105, Method: Compositional matrix adjust.
Identities = 237/650 (36%), Positives = 360/650 (55%), Gaps = 72/650 (11%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 622 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 681
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT + EDGL ++IR K+ + ++ ++K
Sbjct: 682 VSKKTNYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIRTMPGKKSKYEIAAEAEMKKE 741
Query: 299 AASLPKKSPQNIEAKSTSAP----------------KAPIERMKTVASPAKR-------- 334
+ L + +N + K S+P ++ I+ +K AS ++R
Sbjct: 742 KSKLERTPQKNDQGKRKSSPTKKESESKKCKLTPKRESSIKSLKKEASVSQRGLDFKEQA 801
Query: 335 --------KGQNI-------QQSSLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHWN 376
+ +N+ + SL W +KY+P + I+ G+Q +L WL +W+
Sbjct: 802 AEEANGDSRARNLADDSRESKVESLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLQNWH 861
Query: 377 EKFLDTGTKRNGKK------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
+ + K++ K ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NA
Sbjct: 862 KS--PSEDKKHAAKFGKFAGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNA 919
Query: 431 SDSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG- 487
SD+R K K +++ + N SIK S+ + + R LIMDEVDGM+
Sbjct: 920 SDTRSKNSLKEIVAESL---NNTSIKGFYSSGTVHSVGTRH-----ALIMDEVDGMAGNE 971
Query: 488 DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
DRGGI +LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I +M IA
Sbjct: 972 DRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAF 1031
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPF 607
EGL++ A+ E+ N DIR ++ L + YD + + KD + PF
Sbjct: 1032 KEGLKIPPPAMNEIILGANQDIRQVLHNLNMWCARNKALTYDQAKADSHRAKKDVKLGPF 1091
Query: 608 TAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIA 665
K+F G + + ++ DL D + PL +QENYI+ +P +AG D K L L++
Sbjct: 1092 DVARKVFVTGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLS 1151
Query: 666 RAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGW 725
RAA+SI DGD+ + QIR Q W L + ++ + ++P LM G F F W
Sbjct: 1152 RAADSICDGDLVDRQIRNKQNWSLLPTQAIYASVLPGELMRGYMT-------QFPTFPSW 1204
Query: 726 LGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
LGK S+MGK+ R ++DL H S ++ + T+ +DY S L L +PL
Sbjct: 1205 LGKYSSMGKHDRTVQDLALH--MSLRTYSSKRTVNMDYLSHLRDALVQPL 1252
>gi|1022776|gb|AAA79698.1| differentiation specific element binding protein [Mus musculus]
Length = 1130
Score = 390 bits (1003), Expect = e-105, Method: Compositional matrix adjust.
Identities = 231/636 (36%), Positives = 357/636 (56%), Gaps = 59/636 (9%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 378 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 437
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT L EDGL D+IR ++ + ++ ++K
Sbjct: 438 VSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGKRSKYEMAAEAEMKKE 497
Query: 299 AASLPKKSPQNIEAKSTSAP----------------KAPIERMKTVASPAKRKGQNIQQS 342
+ L + +N + K +P +P++ +K AS R G +++++
Sbjct: 498 KSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPR-GLDVKET 556
Query: 343 ----------SLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHWNEKFLDTGTKRNGK 389
L W +KY+P + I+ G+Q +L WL +W++ + K++ K
Sbjct: 557 HGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPE--EKKHAK 614
Query: 390 -----KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--IS 442
++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K K ++
Sbjct: 615 FGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVA 674
Query: 443 KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKI 501
+ + N SIK ++ A + R LIMDEVDGM+ DRGGI +LI IK
Sbjct: 675 ESL---NNTSIKGFYTSGAAPSVSARH-----ALIMDEVDGMAGNEDRGGIQELIGLIKH 726
Query: 502 SKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEEL 561
+KIPIIC+CNDR K++SLV+YC DLRF++PR ++I ++ IA EGL++ A+ E+
Sbjct: 727 TKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEI 786
Query: 562 ADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGG 619
N D+R ++ L + YD + + KD + PF K+F G
Sbjct: 787 ILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETA 846
Query: 620 KLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNV 679
+ + ++ DL D + PL +QENY++ +P +AG D K L L++RAA+SI DGD+ +
Sbjct: 847 HMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDN 906
Query: 680 QIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLL 739
QIR Q W L + ++ + ++P LM G F F WLGK+S+ GK+ R++
Sbjct: 907 QIRSKQNWSLLPTQAIYASVLPGELMRGYM-------TQFPSFPSWLGKHSSTGKHDRIV 959
Query: 740 EDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
+DL H S ++ + T+ +DY S + L PL
Sbjct: 960 QDLSLH--MSLRTYSSKRTVNMDYLSHIRDALVRPL 993
>gi|148705786|gb|EDL37733.1| replication factor C 1, isoform CRA_b [Mus musculus]
Length = 1157
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 231/636 (36%), Positives = 357/636 (56%), Gaps = 59/636 (9%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 404 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 463
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT L EDGL D+IR ++ + ++ ++K
Sbjct: 464 VSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGKRSKYEMAAEAEMKKE 523
Query: 299 AASLPKKSPQNIEAKSTSAP----------------KAPIERMKTVASPAKRKGQNIQQS 342
+ L + +N + K +P +P++ +K AS R G +++++
Sbjct: 524 KSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPR-GLDVKET 582
Query: 343 ----------SLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHWNEKFLDTGTKRNGK 389
L W +KY+P + I+ G+Q +L WL +W++ + K++ K
Sbjct: 583 HGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPE--EKKHAK 640
Query: 390 -----KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--IS 442
++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K K ++
Sbjct: 641 FGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVA 700
Query: 443 KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKI 501
+ + N SIK ++ A + R LIMDEVDGM+ DRGGI +LI IK
Sbjct: 701 ESL---NNTSIKGFYTSGAAPSVSARH-----ALIMDEVDGMAGNEDRGGIQELIGLIKH 752
Query: 502 SKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEEL 561
+KIPIIC+CNDR K++SLV+YC DLRF++PR ++I ++ IA EGL++ A+ E+
Sbjct: 753 TKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEI 812
Query: 562 ADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGG 619
N D+R ++ L + YD + + KD + PF K+F G
Sbjct: 813 ILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETA 872
Query: 620 KLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNV 679
+ + ++ DL D + PL +QENY++ +P +AG D K L L++RAA+SI DGD+ +
Sbjct: 873 HMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDN 932
Query: 680 QIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLL 739
QIR Q W L + ++ + ++P LM G F F WLGK+S+ GK+ R++
Sbjct: 933 QIRSKQNWSLLPTQAIYASVLPGELMRGYM-------TQFPSFPSWLGKHSSTGKHDRIV 985
Query: 740 EDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
+DL H S ++ + T+ +DY S + L PL
Sbjct: 986 QDLSLH--MSLRTYSSKRTVNMDYLSHIRDALVRPL 1019
>gi|327273243|ref|XP_003221390.1| PREDICTED: replication factor C subunit 1-like [Anolis
carolinensis]
Length = 1124
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 242/665 (36%), Positives = 371/665 (55%), Gaps = 66/665 (9%)
Query: 161 RGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLE 220
+ S +P + + +F R+ P G K +P+GA +CL G+TFVI+G L+S+E
Sbjct: 345 KAKSVSPEDSEKKRANYQAYRSFLNREGPKALGSKVLPQGAENCLEGMTFVITGVLESIE 404
Query: 221 REEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280
R+EA+ LI+R+GG+VTG++SKKTN+L+ D +K KA LGT + EDGLFD+I+
Sbjct: 405 RDEAKSLIERYGGKVTGNISKKTNFLVKGRDCGLSKCEKASALGTKIIDEDGLFDLIQKM 464
Query: 281 KPMKA----LAQAESKKSVEKVAASLPKK--------SPQNIEAK-----STSA-----P 318
K+ A+AE+KK+ + S P K SP+ +E++ STSA
Sbjct: 465 PGKKSKYEIAAEAEAKKT-KPTRESTPLKGEAVKRKISPKKMESEPEREASTSADFKSVK 523
Query: 319 KAPIERMKTV---------ASPAKRKGQNIQQSS------LTWTEKYRPKTPNEIV---G 360
KA ++ + + +K G ++QQ+S L W +KYRP T ++ G
Sbjct: 524 KATVDVRRGLDFDEETLEKKHVSKDTGSSVQQTSEGGTEVLLWVDKYRPTTLKTVIGQQG 583
Query: 361 NQQLVKQLHTWLAHWNEKFLDTGTKRNGK--KQNDASAEKAAILSGSPGMGKTTAAKLVC 418
+Q +L WL +W++ ++ K ++D ++ KAA+LSG PG+GKTT A LVC
Sbjct: 584 DQSCANKLLRWLRNWHKNTSGNKHVKSSKFGSKDDGASFKAALLSGPPGVGKTTTASLVC 643
Query: 419 QMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476
+ L +E+NASD+R K K +++ + N SIK S + + + +KH VL
Sbjct: 644 EELNLSYVELNASDTRNKNSLKEVVAESL---NNTSIKGFCSGASSTVS---TKH---VL 694
Query: 477 IMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRK 535
IMDEVDGM+ DRGGI +LI IK +K+PIIC+CNDR K++SLV+YC DLRF +PR
Sbjct: 695 IMDEVDGMAGNEDRGGIQELIDLIKHTKVPIICMCNDRNHPKIRSLVHYCFDLRFYRPRV 754
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRL 595
++I +M IA EGL++ A+ E+ N DIR ++ L S + YD +++
Sbjct: 755 EQIKGAMMSIAYKEGLKIPPPAMNEIILAANQDIRQVLHNLSMWSARNKTLTYDGVKEDA 814
Query: 596 LSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSA 653
+ KD + PF V K+F G ++ + ++ DL D L PL +QENYI+ +P+++
Sbjct: 815 SKAKKDIKLGPFDVVRKVFATGEETSRMSLIDKADLFFHDYSLSPLFVQENYIHVQPAAS 874
Query: 654 GRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLE 713
G D K L L+++ A+SI DGD+ + QIR Q W L + ++ S ++P LM G
Sbjct: 875 GNDMKKHLMLLSKTADSICDGDLVDRQIRSQQNWSLLPTQAIYSSVLPGELMRGYMS--- 931
Query: 714 QGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTE 773
F F WLGK S+ GK+ RL+++L H S ++ + + L+Y S L +
Sbjct: 932 ----QFPSFPSWLGKFSSTGKHDRLIQELSMH--MSLRTHASKRAVNLEYLSYLRDAIVR 985
Query: 774 PLRVL 778
PL L
Sbjct: 986 PLSHL 990
>gi|460932|gb|AAC52140.1| ISRE-binding protein [Mus musculus]
Length = 1145
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 231/636 (36%), Positives = 357/636 (56%), Gaps = 59/636 (9%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 392 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 451
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT L EDGL D+IR ++ + ++ ++K
Sbjct: 452 VSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGKRSKYEMAAEAEMKKE 511
Query: 299 AASLPKKSPQNIEAKSTSAP----------------KAPIERMKTVASPAKRKGQNIQQS 342
+ L + +N + K +P +P++ +K AS R G +++++
Sbjct: 512 KSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPR-GLDVKET 570
Query: 343 ----------SLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHWNEKFLDTGTKRNGK 389
L W +KY+P + I+ G+Q +L WL +W++ + K++ K
Sbjct: 571 HGSRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPE--EKKHAK 628
Query: 390 -----KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--IS 442
++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K K ++
Sbjct: 629 FGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVA 688
Query: 443 KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKI 501
+ + N SIK ++ A + R LIMDEVDGM+ DRGGI +LI IK
Sbjct: 689 ESL---NNTSIKGFYTSGAAPSVSARH-----ALIMDEVDGMAGNEDRGGIQELIGLIKH 740
Query: 502 SKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEEL 561
+KIPIIC+CNDR K++SLV+YC DLRF++PR ++I ++ IA EGL++ A+ E+
Sbjct: 741 TKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEI 800
Query: 562 ADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGG 619
N D+R ++ L + YD + + KD + PF K+F G
Sbjct: 801 ILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETA 860
Query: 620 KLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNV 679
+ + ++ DL D + PL +QENY++ +P +AG D K L L++RAA+SI DGD+ +
Sbjct: 861 HMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDN 920
Query: 680 QIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLL 739
QIR Q W L + ++ + ++P LM G F F WLGK+S+ GK+ R++
Sbjct: 921 QIRSKQNWSLLPTQAIYASVLPGELMRGYM-------TQFPSFPSWLGKHSSTGKHDRIV 973
Query: 740 EDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
+DL H S ++ + T+ +DY S + L PL
Sbjct: 974 QDLSLH--MSLRTYSSKRTVNMDYLSHIRDALVRPL 1007
>gi|188219597|ref|NP_035388.2| replication factor C subunit 1 [Mus musculus]
gi|148705787|gb|EDL37734.1| replication factor C 1, isoform CRA_c [Mus musculus]
Length = 1131
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 231/637 (36%), Positives = 357/637 (56%), Gaps = 60/637 (9%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 378 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 437
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT L EDGL D+IR ++ + ++ ++K
Sbjct: 438 VSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGKRSKYEMAAEAEMKKE 497
Query: 299 AASLPKKSPQNIEAKSTSAP----------------KAPIERMKTVASPAKRKGQNIQQS 342
+ L + +N + K +P +P++ +K AS R G +++++
Sbjct: 498 KSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPR-GLDVKET 556
Query: 343 ----------SLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHWNEKFLDTGTKRNGK 389
L W +KY+P + I+ G+Q +L WL +W++ + K++
Sbjct: 557 HGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPE--EKKHAA 614
Query: 390 K------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--I 441
K ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K K +
Sbjct: 615 KFGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVV 674
Query: 442 SKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIK 500
++ + N SIK ++ A + R LIMDEVDGM+ DRGGI +LI IK
Sbjct: 675 AESL---NNTSIKGFYTSGAAPSVSARH-----ALIMDEVDGMAGNEDRGGIQELIGLIK 726
Query: 501 ISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEE 560
+KIPIIC+CNDR K++SLV+YC DLRF++PR ++I ++ IA EGL++ A+ E
Sbjct: 727 HTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNE 786
Query: 561 LADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNG 618
+ N D+R ++ L + YD + + KD + PF K+F G
Sbjct: 787 IILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEET 846
Query: 619 GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFN 678
+ + ++ DL D + PL +QENY++ +P +AG D K L L++RAA+SI DGD+ +
Sbjct: 847 AHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVD 906
Query: 679 VQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRL 738
QIR Q W L + ++ + ++P LM G F F WLGK+S+ GK+ R+
Sbjct: 907 NQIRSKQNWSLLPTQAIYASVLPGELMRGYM-------TQFPSFPSWLGKHSSTGKHDRI 959
Query: 739 LEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
++DL H S ++ + T+ +DY S + L PL
Sbjct: 960 VQDLSLH--MSLRTYSSKRTVNMDYLSHIRDALVRPL 994
>gi|1703056|sp|P35601.2|RFC1_MOUSE RecName: Full=Replication factor C subunit 1; AltName:
Full=A1-P145; AltName: Full=Activator 1 140 kDa subunit;
Short=A1 140 kDa subunit; AltName: Full=Activator 1
large subunit; AltName: Full=Activator 1 subunit 1;
AltName: Full=Differentiation-specific element-binding
protein; AltName: Full=ISRE-binding protein; AltName:
Full=Replication factor C 140 kDa subunit; Short=RF-C
140 kDa subunit; Short=RFC140; AltName: Full=Replication
factor C large subunit
gi|457742|emb|CAA51260.1| replication factor C [Mus musculus]
Length = 1131
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 231/637 (36%), Positives = 357/637 (56%), Gaps = 60/637 (9%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 378 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 437
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT L EDGL D+IR ++ + ++ ++K
Sbjct: 438 VSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGKRSKYEMAAEAEMKKE 497
Query: 299 AASLPKKSPQNIEAKSTSAP----------------KAPIERMKTVASPAKRKGQNIQQS 342
+ L + +N + K +P +P++ +K AS R G +++++
Sbjct: 498 KSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPR-GLDVKET 556
Query: 343 ----------SLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHWNEKFLDTGTKRNGK 389
L W +KY+P + I+ G+Q +L WL +W++ + K++
Sbjct: 557 HGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPE--EKKHAA 614
Query: 390 K------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--I 441
K ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K K +
Sbjct: 615 KFGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVV 674
Query: 442 SKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIK 500
++ + N SIK ++ A + R LIMDEVDGM+ DRGGI +LI IK
Sbjct: 675 AESL---NNTSIKGFYTSGAAPSVSARH-----ALIMDEVDGMAGNEDRGGIQELIGLIK 726
Query: 501 ISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEE 560
+KIPIIC+CNDR K++SLV+YC DLRF++PR ++I ++ IA EGL++ A+ E
Sbjct: 727 HTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNE 786
Query: 561 LADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNG 618
+ N D+R ++ L + YD + + KD + PF K+F G
Sbjct: 787 IILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEET 846
Query: 619 GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFN 678
+ + ++ DL D + PL +QENY++ +P +AG D K L L++RAA+SI DGD+ +
Sbjct: 847 AHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVD 906
Query: 679 VQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRL 738
QIR Q W L + ++ + ++P LM G F F WLGK+S+ GK+ R+
Sbjct: 907 NQIRSKQNWSLLPTQAIYASVLPGELMRGYM-------TQFPSFPSWLGKHSSTGKHDRI 959
Query: 739 LEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
++DL H S ++ + T+ +DY S + L PL
Sbjct: 960 VQDLSLH--MSLRTYSSKRTVNMDYLSHIRDALVRPL 994
>gi|54887426|gb|AAH85173.1| Rfc1 protein [Mus musculus]
Length = 1132
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 231/637 (36%), Positives = 357/637 (56%), Gaps = 60/637 (9%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 378 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 437
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT L EDGL D+IR ++ + ++ ++K
Sbjct: 438 VSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGKRSKYEMAAEAEMKKE 497
Query: 299 AASLPKKSPQNIEAKSTSAP----------------KAPIERMKTVASPAKRKGQNIQQS 342
+ L + +N + K +P +P++ +K AS R G +++++
Sbjct: 498 KSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPR-GLDVKET 556
Query: 343 ----------SLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHWNEKFLDTGTKRNGK 389
L W +KY+P + I+ G+Q +L WL +W++ + K++
Sbjct: 557 HGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPE--EKKHAA 614
Query: 390 K------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--I 441
K ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K K +
Sbjct: 615 KFGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVV 674
Query: 442 SKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIK 500
++ + N SIK ++ A + R LIMDEVDGM+ DRGGI +LI IK
Sbjct: 675 AESL---NNTSIKGFYTSGAAPSVSARH-----ALIMDEVDGMAGNEDRGGIQELIGLIK 726
Query: 501 ISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEE 560
+KIPIIC+CNDR K++SLV+YC DLRF++PR ++I ++ IA EGL++ A+ E
Sbjct: 727 HTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNE 786
Query: 561 LADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNG 618
+ N D+R ++ L + YD + + KD + PF K+F G
Sbjct: 787 IILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEET 846
Query: 619 GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFN 678
+ + ++ DL D + PL +QENY++ +P +AG D K L L++RAA+SI DGD+ +
Sbjct: 847 AHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVD 906
Query: 679 VQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRL 738
QIR Q W L + ++ + ++P LM G F F WLGK+S+ GK+ R+
Sbjct: 907 NQIRSKQNWSLLPTQAIYASVLPGELMRGYM-------TQFPSFPSWLGKHSSTGKHDRI 959
Query: 739 LEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
++DL H S ++ + T+ +DY S + L PL
Sbjct: 960 VQDLSLH--MSLRTYSSKRTVNMDYLSHIRDALVRPL 994
>gi|405112|gb|AAA21643.1| activator 1 large subunit [Mus musculus]
Length = 1131
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 231/637 (36%), Positives = 357/637 (56%), Gaps = 60/637 (9%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 378 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 437
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT L EDGL D+IR ++ + ++ ++K
Sbjct: 438 VSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGKRSKYEMAAEAEMKKE 497
Query: 299 AASLPKKSPQNIEAKSTSAP----------------KAPIERMKTVASPAKRKGQNIQQS 342
+ L + +N + K +P +P++ +K AS R G +++++
Sbjct: 498 KSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPR-GLDVKET 556
Query: 343 ----------SLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHWNEKFLDTGTKRNGK 389
L W +KY+P + I+ G+Q +L WL +W++ + K++
Sbjct: 557 HGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPE--EKKHAA 614
Query: 390 K------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--I 441
K ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K K +
Sbjct: 615 KFGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVV 674
Query: 442 SKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIK 500
++ + N SIK ++ A + R LIMDEVDGM+ DRGGI +LI IK
Sbjct: 675 AESL---NNTSIKGFYTSGAAPSVSARH-----ALIMDEVDGMAGNEDRGGIQELIGLIK 726
Query: 501 ISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEE 560
+KIPIIC+CNDR K++SLV+YC DLRF++PR ++I ++ IA EGL++ A+ E
Sbjct: 727 HTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNE 786
Query: 561 LADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNG 618
+ N D+R ++ L + YD + + KD + PF K+F G
Sbjct: 787 IILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEET 846
Query: 619 GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFN 678
+ + ++ DL D + PL +QENY++ +P +AG D K L L++RAA+SI DGD+ +
Sbjct: 847 AHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVD 906
Query: 679 VQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRL 738
QIR Q W L + ++ + ++P LM G F F WLGK+S+ GK+ R+
Sbjct: 907 NQIRSKQNWSLLPTQAIYASVLPGELMRGYM-------TQFPSFPNWLGKHSSTGKHDRI 959
Query: 739 LEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
++DL H S ++ + T+ +DY S + L PL
Sbjct: 960 VQDLSLH--MSLRTYSSKRTVNMDYLSHIRDALVRPL 994
>gi|149035369|gb|EDL90073.1| replication factor C 1 [Rattus norvegicus]
Length = 1131
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 232/636 (36%), Positives = 353/636 (55%), Gaps = 58/636 (9%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+EREEA+ LI+R+GG+VTG+
Sbjct: 377 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGN 436
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKT+YL+ D +KS KA LGT L EDGL D+IR K+ + ++ ++K
Sbjct: 437 VSKKTSYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGKKSKYEIAAEAEMKKE 496
Query: 299 AASLPKKSPQNIEAKSTSAP-KAPIERMKTVASPAKRKGQNI------------------ 339
+ L + +N + K +P K +E K+ +P K +
Sbjct: 497 KSKLERTPQKNDQGKRKLSPTKRELEPKKSKLTPLKHSPRKAVKEEERVCPRGLDAKEPH 556
Query: 340 ------QQSSLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHWNEKFLDTGTKRNGKK 390
++ L W +KY+P + I+ G+Q +L WL +W++ + K++ K
Sbjct: 557 GSHSASREECLLWVDKYKPTSLKNIIGQQGDQSCANKLLRWLRNWHKSSPE--EKKHAAK 614
Query: 391 ------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--IS 442
++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K K ++
Sbjct: 615 FGKVASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAIVA 674
Query: 443 KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKI 501
+ + N SIK ++ A + R LIMDEVDGM+ DRGGI +LI IK
Sbjct: 675 ESL---NNTSIKGFYTSGASPSVSARH-----ALIMDEVDGMAGNEDRGGIQELIGLIKH 726
Query: 502 SKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEEL 561
+KIPIIC+CNDR K++SLV+YC DLRF++PR ++I ++ IA EGL++ A+ E+
Sbjct: 727 TKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEI 786
Query: 562 ADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGG 619
N D+R ++ L V+ YD + + KD + PF K+F G
Sbjct: 787 ILGANQDVRQVLHNLSMWCAQSKVLTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETA 846
Query: 620 KLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNV 679
+ + ++ DL D + PL +QENY++ +P +AG D K L L++RAA+SI DGD+ +
Sbjct: 847 HMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDN 906
Query: 680 QIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLL 739
QIR Q W L + ++ + ++P LM G F F WLGK+S+ GK+ R +
Sbjct: 907 QIRSKQNWSLLPTQAIYASVVPGELMRGYMS-------QFPSFPSWLGKHSSTGKHDRTV 959
Query: 740 EDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
+DL H S ++ + T+ +DY S + L PL
Sbjct: 960 QDLSLH--MSLRTYSSKRTVNMDYLSHIRDALVRPL 993
>gi|114593608|ref|XP_001140765.1| PREDICTED: replication factor C subunit 1 isoform 4 [Pan troglodytes]
Length = 1148
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 244/682 (35%), Positives = 367/682 (53%), Gaps = 75/682 (10%)
Query: 147 TESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLG 206
T++P K+ + + S +P + + ++ R+ P G KE+P+GA +CL
Sbjct: 351 TKTPKKT--KSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLE 408
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT
Sbjct: 409 GLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTK 468
Query: 267 FLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKA------ 320
+ EDGL ++IR K+ + + ++K + L + + ++ K +P
Sbjct: 469 IIDEDGLLNLIRTMPGKKSKYEIAVETEMKK-ESKLERTPQKKVQGKRKISPSKKESESK 527
Query: 321 ---PIERMKTVASPAKR-----------------------KGQNIQQSS-------LTWT 347
P + ++A K+ K +N+ S L W
Sbjct: 528 KSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWV 587
Query: 348 EKYRPKTPNEIV---GNQQLVKQLHTWLAHW------NEKFLDTGTKRNGKKQNDASAEK 398
+KY+P + I+ G+Q +L WL +W ++K K +GK +D S+ K
Sbjct: 588 DKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSGK--DDGSSFK 645
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKEL 456
AA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K+ K +++ + N SIK
Sbjct: 646 AALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESL---NNTSIKGF 702
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYS 515
SN A S S K LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR
Sbjct: 703 YSNGAAS-----SVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNH 757
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
K++SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++
Sbjct: 758 PKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHN 817
Query: 576 LQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSD 633
L + YD + + KD + PF K+F G + + ++ DL D
Sbjct: 818 LSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHD 877
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
+ PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L +
Sbjct: 878 YSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQ 937
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSK 753
++ + ++P LM G F F WLGK+S+ GK+ R+++DL H S ++
Sbjct: 938 AIYASVLPGELMRGYM-------TQFPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTY 988
Query: 754 LGRDTLRLDYFSLLLKQLTEPL 775
+ T+ +DY SLL L +PL
Sbjct: 989 SSKRTVNMDYLSLLRDALVQPL 1010
>gi|397524499|ref|XP_003832228.1| PREDICTED: replication factor C subunit 1 [Pan paniscus]
Length = 1148
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 244/682 (35%), Positives = 367/682 (53%), Gaps = 75/682 (10%)
Query: 147 TESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLG 206
T++P K+ + + S +P + + ++ R+ P G KE+P+GA +CL
Sbjct: 351 TKTPKKT--KSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLE 408
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT
Sbjct: 409 GLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTK 468
Query: 267 FLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKA------ 320
+ EDGL ++IR K+ + + ++K + L + + ++ K +P
Sbjct: 469 IIDEDGLLNLIRTMPGKKSKYEIAVETEMKK-ESKLERTPQKKVQGKRKISPSKKESESK 527
Query: 321 ---PIERMKTVASPAKR-----------------------KGQNIQQSS-------LTWT 347
P + ++A K+ K +N+ S L W
Sbjct: 528 KSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDNKARNLADDSSENKVENLLWV 587
Query: 348 EKYRPKTPNEIV---GNQQLVKQLHTWLAHW------NEKFLDTGTKRNGKKQNDASAEK 398
+KY+P + I+ G+Q +L WL +W ++K K +GK +D S+ K
Sbjct: 588 DKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSGK--DDGSSFK 645
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKEL 456
AA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K+ K +++ + N SIK
Sbjct: 646 AALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESL---NNTSIKGF 702
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYS 515
SN A S S K LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR
Sbjct: 703 YSNGAAS-----SVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNH 757
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
K++SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++
Sbjct: 758 PKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHN 817
Query: 576 LQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSD 633
L + YD + + KD + PF K+F G + + ++ DL D
Sbjct: 818 LSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHD 877
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
+ PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L +
Sbjct: 878 YSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQ 937
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSK 753
++ + ++P LM G F F WLGK+S+ GK+ R+++DL H S ++
Sbjct: 938 AIYASVLPGELMRGYM-------TQFPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTY 988
Query: 754 LGRDTLRLDYFSLLLKQLTEPL 775
+ T+ +DY SLL L +PL
Sbjct: 989 SSKRTVNMDYLSLLRDALVQPL 1010
>gi|334331382|ref|XP_001374096.2| PREDICTED: replication factor C subunit 1-like [Monodelphis
domestica]
Length = 1279
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 259/742 (34%), Positives = 394/742 (53%), Gaps = 81/742 (10%)
Query: 86 RSSPLKKFHKADDDDDDFVPPSVKKNSVGATPSKKLKSGSGRAVAQKSVDIDDDEEEDVK 145
+SSP K HK +++ P ++K +S A K+ +S + + ++S + E E V
Sbjct: 427 KSSPHKVPHKTEEE-----PSALKVSSKLALLKKREESSNKK---EESTESRKKENEVVL 478
Query: 146 KTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCL 205
K E + + S +P + + ++ R+ P G KE+P+GA +CL
Sbjct: 479 KEERKSPKKNKNSPSKTESVSPEDTEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCL 538
Query: 206 GGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGT 265
GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKT+YL+ D +KS KA LGT
Sbjct: 539 EGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTSYLVMGRDSGQSKSDKALALGT 598
Query: 266 PFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEA--KSTSAPKAPIE 323
+ EDGL D+IR K+ + + V K + L +K+PQ + + TS K E
Sbjct: 599 KIIDEDGLLDLIRTLPGKKSKYEIAVEAEVRKEKSKL-EKTPQKTDQGKRKTSPNKKDSE 657
Query: 324 RMKTVASPAK--------------RKGQNIQQ----------------------SSLTWT 347
+ +P K +KG + + L W
Sbjct: 658 SKRNKLTPPKVSSMNSFKTETSEFQKGLDFKHVVGEKNVLKPEKYIADQSKDKAEVLLWV 717
Query: 348 EKYRPKTPNEIVG---NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQN------DASAEK 398
+KY+P + I+G +Q +L WL +W + + K++ K N D S+ K
Sbjct: 718 DKYKPTSLKAIIGQQGDQSCANKLLRWLRNWPKNM--SEDKKHAVKVNKFGGKDDGSSFK 775
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKEL 456
AA+LSG PG+GKTT A LVC+ LG+ +E+NASD+R K+ K +++ + N SIK+
Sbjct: 776 AALLSGPPGVGKTTTASLVCEELGYSYVELNASDTRSKSSLKEIVAESL---NNTSIKDF 832
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYS 515
S+ A S +KH VLIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR
Sbjct: 833 CSSAAHSGG---TKH---VLIMDEVDGMAGTEDRGGIQELIGLIKHTKIPIICMCNDRNH 886
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
K++SLV+YC DLRF++PR ++I +M +A EGL++ A+ E+ N DIR ++
Sbjct: 887 PKMRSLVHYCFDLRFQRPRIEQIKGAMMSVAFKEGLKIPPPAMNEIILAANHDIRQVLHN 946
Query: 576 LQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSD 633
L + YD + + KD + PF K+F G + + ++ DL D
Sbjct: 947 LSMWCAENKALTYDQAKTDSSRAKKDIKLGPFDVARKVFTAGEETAHMSLVDKSDLFFHD 1006
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
+ PL +QENY++ +P++AG D K L L++RAA+SI DGD+ + QIR Q W L +
Sbjct: 1007 YSIAPLFVQENYLHVKPAAAGGDMKKHLMLLSRAADSICDGDLVDRQIRSRQNWSLLPTQ 1066
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSK 753
++ S ++P LM G F F WLGK S+ GK+ R++++L H S ++
Sbjct: 1067 AIYSSVLPGELMRGYMT-------QFPSFPSWLGKFSSTGKHDRIVQELALH--MSLETH 1117
Query: 754 LGRDTLRLDYFSLLLKQLTEPL 775
+ T+ LDY S + L PL
Sbjct: 1118 SSKRTVNLDYLSHMRDALILPL 1139
>gi|344255969|gb|EGW12073.1| Replication factor C subunit 1 [Cricetulus griseus]
Length = 1065
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 244/653 (37%), Positives = 353/653 (54%), Gaps = 82/653 (12%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+EREEA+ LI+R+GG+VTG+
Sbjct: 301 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGN 360
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA----LAQAESKKS 294
VSKKTNYL+ D +KS KA LGT L EDGL D+IR K+ A+AE KK
Sbjct: 361 VSKKTNYLVMGRDSGQSKSDKATALGTKILDEDGLLDLIRTMPGKKSKYEIAAEAEMKKE 420
Query: 295 VEKVAASLPKKSPQNIEAKS-------------TSAPKAPIERMKTVASPAKR------- 334
K+ + PKK Q S T +P + +K A ++R
Sbjct: 421 KSKLEQT-PKKHEQGKRKISPTKKESESKKSKLTPQRDSPAKAIKKEADMSRRGLDFTEQ 479
Query: 335 -----KGQNIQQ-----------SSLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHW 375
G N Q SL W +KY+P + I+ G+Q +L WL +W
Sbjct: 480 VVKEKPGNNRAQGPAKNSSGNKVESLLWVDKYKPTSLKNIIGQQGDQSCANKLLRWLRNW 539
Query: 376 N-----EKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
+ EK +K + K +D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NA
Sbjct: 540 HKSSPEEKKHARFSKHSSK--DDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNA 597
Query: 431 SDSRGKADAKISKGIGGSNANSIKELVS----NEALSANMDRSKHP-KTVLIMDEVDGMS 485
SD+R K NS+K +V+ N ++ R P K LIMDEVDGM+
Sbjct: 598 SDTRSK--------------NSLKTIVAESLDNTSIKGFYTRRATPSKHALIMDEVDGMA 643
Query: 486 AG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544
DRGGI +LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I ++
Sbjct: 644 GNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLS 703
Query: 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDI 604
IA EGL++ A+ E+ N D+R ++ + + YD + + KD +
Sbjct: 704 IAFKEGLKIPPPAMNEIILGANQDVRQVLHNMSMWCAQSKALTYDQAKADSQRAKKDIRL 763
Query: 605 SPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLS 662
PF K+F G + + ++ DL D + PL +QENY++ +P +AG D K L
Sbjct: 764 GPFDVARKVFAAGEETAHMSLMDKSDLFFHDYSIGPLFVQENYLHVKPMAAGGDMKKHLM 823
Query: 663 LIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRF 722
L++RAA+SI DGD+ + QIR Q W L + ++ + ++P LM G F F
Sbjct: 824 LLSRAADSICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRGYM-------TQFPTF 876
Query: 723 GGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
WLGK+S+ GK+ R+++DL H S ++ + T+ +DY S + L PL
Sbjct: 877 PSWLGKHSSTGKHDRIVQDLALH--MSLRTYSSKRTVNMDYLSHIRDALVLPL 927
>gi|410254314|gb|JAA15124.1| replication factor C (activator 1) 1, 145kDa [Pan troglodytes]
gi|410297908|gb|JAA27554.1| replication factor C (activator 1) 1, 145kDa [Pan troglodytes]
gi|410338041|gb|JAA37967.1| replication factor C (activator 1) 1, 145kDa [Pan troglodytes]
Length = 1147
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 245/682 (35%), Positives = 368/682 (53%), Gaps = 76/682 (11%)
Query: 147 TESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLG 206
T++P K+ + + S +P + + ++ R+ P G KE+P+GA +CL
Sbjct: 351 TKTPKKT--KSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLE 408
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT
Sbjct: 409 GLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTK 468
Query: 267 FLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKA------ 320
+ EDGL ++IR K+ + + ++K + L + + ++ K +P
Sbjct: 469 IIDEDGLLNLIRTMPGKKSKYEIAVETEMKK-ESKLERTPQKKVQGKRKISPSKKESESK 527
Query: 321 ---PIERMKTVASPAKR-----------------------KGQNIQQSS-------LTWT 347
P + ++A K+ K +N+ S L W
Sbjct: 528 KSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWV 587
Query: 348 EKYRPKTPNEIV---GNQQLVKQLHTWLAHW------NEKFLDTGTKRNGKKQNDASAEK 398
+KY+P + I+ G+Q +L WL +W ++K G K +GK +D S+ K
Sbjct: 588 DKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAKFG-KFSGK--DDGSSFK 644
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKEL 456
AA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K+ K +++ + N SIK
Sbjct: 645 AALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESL---NNTSIKGF 701
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYS 515
SN A S S K LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR
Sbjct: 702 YSNGAAS-----SVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNH 756
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
K++SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++
Sbjct: 757 PKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHN 816
Query: 576 LQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSD 633
L + YD + + KD + PF K+F G + + ++ DL D
Sbjct: 817 LSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHD 876
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
+ PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L +
Sbjct: 877 YSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQ 936
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSK 753
++ + ++P LM G F F WLGK+S+ GK+ R+++DL H S ++
Sbjct: 937 AIYASVLPGELMRGYM-------TQFPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTY 987
Query: 754 LGRDTLRLDYFSLLLKQLTEPL 775
+ T+ +DY SLL L +PL
Sbjct: 988 SSKRTVNMDYLSLLRDALVQPL 1009
>gi|296908|emb|CAA80355.1| PO-GA [Homo sapiens]
gi|2827257|gb|AAB99788.1| DNA binding protein [Homo sapiens]
Length = 1147
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 243/679 (35%), Positives = 366/679 (53%), Gaps = 70/679 (10%)
Query: 147 TESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLG 206
T++P K+ + + S +P + + ++ R+ P G KE+P+GA +CL
Sbjct: 351 TKTPKKT--KSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLE 408
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT
Sbjct: 409 GLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTK 468
Query: 267 FLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKA------ 320
+ EDGL ++IR K+ + + ++K + L + +N++ K +P
Sbjct: 469 IIDEDGLLNLIRTMPGKKSKYEIAVETEMKK-ESKLERTPQKNVQGKRKISPSKKESESK 527
Query: 321 ---PIERMKTVASPAKR-----------------------KGQNIQQSS-------LTWT 347
P + ++A K+ K +N+ S L W
Sbjct: 528 KSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWV 587
Query: 348 EKYRPKTPNEIVG---NQQLVKQLHTWLAHWNEKFL-DTGTKRNGK--KQNDASAEKAAI 401
+KY+P + I+G +Q +L WL +W + D + GK ++D S+ KAA+
Sbjct: 588 DKYKPTSLKTIIGQQGDQSCANKLLLWLRNWQKSSSEDKKHSKFGKFSGKDDNSSFKAAL 647
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKELVSN 459
LSG PG+GKTT A LVCQ LG+ +E+N SD+R K+ K +++ + N SIK SN
Sbjct: 648 LSGPPGVGKTTTASLVCQELGYSYVELNRSDTRSKSSLKAIVAESL---NNTSIKGFYSN 704
Query: 460 EALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKL 518
A S S K LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR K+
Sbjct: 705 GAAS-----SVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKI 759
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++ L
Sbjct: 760 RSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSM 819
Query: 579 MSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDL 636
+ YD + + KD + PF K+F G + + ++ DL D +
Sbjct: 820 WCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSI 879
Query: 637 VPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLA 696
PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L + ++
Sbjct: 880 APLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQAIY 939
Query: 697 SCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGR 756
+ ++P LM G F F WLGK+S+ GK+ R+++DL H S ++ +
Sbjct: 940 ASVLPGELMRGYM-------TQFPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTYSSK 990
Query: 757 DTLRLDYFSLLLKQLTEPL 775
T+ +DY SLL L +PL
Sbjct: 991 RTVNMDYLSLLRDALVQPL 1009
>gi|355716180|gb|AES05528.1| replication factor C 1, 145kDa [Mustela putorius furo]
Length = 1154
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 245/678 (36%), Positives = 361/678 (53%), Gaps = 91/678 (13%)
Query: 164 SGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREE 223
S +P R + ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+E
Sbjct: 365 SVSPEDSEKRRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDE 424
Query: 224 AEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM 283
A+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT + EDGL ++IR
Sbjct: 425 AKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIRTMPGK 484
Query: 284 KA----LAQAESKKSVEKVAASLPKK-------SPQNIEAKSTSAPKAPIERMKTVASPA 332
K+ +AE KK K+ + KK SP E++S + P ++ T SP
Sbjct: 485 KSKYEIAVEAEMKKEKSKLERTPQKKDQGKRKISPTKKESESKKSRLTP-KKDSTTKSPK 543
Query: 333 KRKG----------------------QNIQQSS--------LTWTEKYRPKTPNEIVG-- 360
K G +N+ S L W +KY+P + I+G
Sbjct: 544 KGTGVFWRCLDFEEQVAEETDGDSQARNLADDSSEKNKVEHLLWVDKYKPTSLKTIIGQQ 603
Query: 361 -NQQLVKQLHTWLAHWNEKFLDTGTKRNGK-----KQNDASAEKAAILSGSPGMGKTTAA 414
+Q +L WL +W+ + TKR K ++D S+ KAA+LSG PG+GKT A
Sbjct: 604 GDQSCANKLLRWLQNWH-RSPSEDTKRAAKFGKFAGKDDGSSFKAALLSGPPGVGKTATA 662
Query: 415 KLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS----NEALSANMDRSK 470
LVCQ LG+ +E+NASD+R K NS+KE+V+ N +++ S+
Sbjct: 663 ALVCQELGYSYVELNASDTRSK--------------NSLKEIVAESLNNTSITGFYSTSQ 708
Query: 471 H----------PKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLK 519
H K LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR K++
Sbjct: 709 HGSGGPTHSISTKHALIMDEVDGMAGSEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIR 768
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++ L
Sbjct: 769 SLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMW 828
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLV 637
+ YD + + KD + PF K+F G + + ++ DL D +
Sbjct: 829 CARSKALTYDQAKADSHRAKKDIRLGPFDVARKVFAAGEETAHMSLMDKSDLFFHDYSIA 888
Query: 638 PLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLAS 697
PL +QENY++ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L + ++ +
Sbjct: 889 PLFVQENYVHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDRQIRSKQNWSLLPTQAIYA 948
Query: 698 CIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRD 757
++P LM G F F WLG++S+ GK+ R+++DL H S ++ +
Sbjct: 949 SVLPGELMRGYM-------TQFPTFPSWLGRHSSTGKHDRIVQDLALH--MSLRTYSSKR 999
Query: 758 TLRLDYFSLLLKQLTEPL 775
T+ +DY S + L +PL
Sbjct: 1000 TINMDYLSHIRDALVQPL 1017
>gi|345328868|ref|XP_001512744.2| PREDICTED: replication factor C subunit 1 [Ornithorhynchus anatinus]
Length = 1316
Score = 387 bits (995), Expect = e-104, Method: Compositional matrix adjust.
Identities = 239/646 (36%), Positives = 355/646 (54%), Gaps = 68/646 (10%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+RHGG+VTG+
Sbjct: 440 AYRSYLNREGPKALGSKEIPQGAENCLEGLTFVITGVLESIERDEAKCLIERHGGKVTGN 499
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR------ASKPMKALAQAESK 292
VSK+T+YL+ D +KS KA LGT + EDGL ++IR + M A A+ + +
Sbjct: 500 VSKRTSYLVMGRDSGQSKSDKASALGTKIIDEDGLLNLIRTMPGKKSKYEMAAEAEVKKE 559
Query: 293 KSV-----EKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVAS----PAKRKGQNIQQSS 343
KS+ +K K +P E+ S P E AS + RKG + QQ +
Sbjct: 560 KSILEKTPQKANQGKRKATPNRKESGSKKGKWTPEEDDVPNASRKDTSSSRKGLDFQQMA 619
Query: 344 ---------------------LTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHW---- 375
L W +KY+P + I+ G+Q +L WL +W
Sbjct: 620 GEEKKGVSQAGRVADPGKAEGLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLKNWPGTS 679
Query: 376 -NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434
EK +K G+ +D S+ KA +LSG PG+GKTT A LVC+ LG+ +E+NASD+R
Sbjct: 680 PEEKRQAKSSKSVGR--DDGSSFKAVLLSGPPGVGKTTTASLVCEELGYSFVELNASDTR 737
Query: 435 GKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGG 491
K K +++ + N SIK SN ++A K LIMDEVDGM+ DRGG
Sbjct: 738 SKNSLKEIVAESL---NNTSIKGFCSNGEITAGGG-----KHALIMDEVDGMAGNEDRGG 789
Query: 492 IADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGL 551
I +LI I+ +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I +M IA EGL
Sbjct: 790 IQELIGLIRQTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGL 849
Query: 552 EVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVD 611
++ A+ E+ N DIR ++ L + YD + + KD +SPF
Sbjct: 850 KIPPPAMNEIILGANQDIRQVLHNLSMWCAKSKALNYDQAKADSNRARKDIKLSPFDVAR 909
Query: 612 KLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAE 669
K+F G + + ++ DL D + PL +QENY++ +P++AG + K L L++RAA+
Sbjct: 910 KVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYVHVKPAAAGGNIKKHLMLLSRAAD 969
Query: 670 SISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKN 729
SI DGD+ + QIR Q W L + ++ S ++P LM G F F WLGK+
Sbjct: 970 SICDGDLVDRQIRSKQNWSLLPTQAIYSSVLPGELMRGYM-------TQFPNFPSWLGKH 1022
Query: 730 STMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
S+MGK+ R++++L H S ++ + T+ L+Y + L PL
Sbjct: 1023 SSMGKHDRIVQELALH--MSLRTHSSKRTVNLEYLPHVRDALVRPL 1066
>gi|354504965|ref|XP_003514543.1| PREDICTED: replication factor C subunit 1-like [Cricetulus griseus]
Length = 1276
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 243/654 (37%), Positives = 353/654 (53%), Gaps = 83/654 (12%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+EREEA+ LI+R+GG+VTG+
Sbjct: 511 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGN 570
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA----LAQAESKKS 294
VSKKTNYL+ D +KS KA LGT L EDGL D+IR K+ A+AE KK
Sbjct: 571 VSKKTNYLVMGRDSGQSKSDKATALGTKILDEDGLLDLIRTMPGKKSKYEIAAEAEMKKE 630
Query: 295 VEKVAASLPKKSPQNIEAKS-------------TSAPKAPIERMKTVASPAKR------- 334
K+ + PKK Q S T +P + +K A ++R
Sbjct: 631 KSKLEQT-PKKHEQGKRKISPTKKESESKKSKLTPQRDSPAKAIKKEADMSRRGLDFTEQ 689
Query: 335 -----KGQNIQQ-----------SSLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHW 375
G N Q SL W +KY+P + I+ G+Q +L WL +W
Sbjct: 690 VVKEKPGNNRAQGPAKNSSGNKVESLLWVDKYKPTSLKNIIGQQGDQSCANKLLRWLRNW 749
Query: 376 N------EKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429
+ +K +K + K +D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+N
Sbjct: 750 HKSSPEEKKHAARFSKHSSK--DDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELN 807
Query: 430 ASDSRGKADAKISKGIGGSNANSIKELVS----NEALSANMDRSKHP-KTVLIMDEVDGM 484
ASD+R K NS+K +V+ N ++ R P K LIMDEVDGM
Sbjct: 808 ASDTRSK--------------NSLKTIVAESLDNTSIKGFYTRRATPSKHALIMDEVDGM 853
Query: 485 SAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLM 543
+ DRGGI +LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I ++
Sbjct: 854 AGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAML 913
Query: 544 QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDED 603
IA EGL++ A+ E+ N D+R ++ + + YD + + KD
Sbjct: 914 SIAFKEGLKIPPPAMNEIILGANQDVRQVLHNMSMWCAQSKALTYDQAKADSQRAKKDIR 973
Query: 604 ISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRL 661
+ PF K+F G + + ++ DL D + PL +QENY++ +P +AG D K L
Sbjct: 974 LGPFDVARKVFAAGEETAHMSLMDKSDLFFHDYSIGPLFVQENYLHVKPMAAGGDMKKHL 1033
Query: 662 SLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNR 721
L++RAA+SI DGD+ + QIR Q W L + ++ + ++P LM G F
Sbjct: 1034 MLLSRAADSICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRGYMT-------QFPT 1086
Query: 722 FGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F WLGK+S+ GK+ R+++DL H S ++ + T+ +DY S + L PL
Sbjct: 1087 FPSWLGKHSSTGKHDRIVQDLALH--MSLRTYSSKRTVNMDYLSHIRDALVLPL 1138
>gi|432109336|gb|ELK33597.1| Replication factor C subunit 1 [Myotis davidii]
Length = 1193
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 250/664 (37%), Positives = 364/664 (54%), Gaps = 71/664 (10%)
Query: 164 SGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREE 223
S +P R + ++ R+ P G KE+P+GA +CL GL FVI+G L+S+ER+E
Sbjct: 409 SVSPEDSEKRRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDE 468
Query: 224 AEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM 283
A+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT + EDGL D+IR
Sbjct: 469 AKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLDLIRTMPGK 528
Query: 284 KA----LAQAESKKSVEKVAASLPKK--------SPQNIEA---KSTSAPK--APIERMK 326
K+ +AE K K+ + P+K SP E+ KS PK +P+ +K
Sbjct: 529 KSKYEIAVEAEMNKEKSKLQRT-PQKNYQGKRKISPNKKESESRKSQRTPKKDSPMTSVK 587
Query: 327 TVASPAKR----KGQNIQQSS-------------------LTWTEKYRPKTPNEIVG--- 360
S +R K Q +++S L W +KY+P + I+G
Sbjct: 588 KETSVFQRGLDFKEQVAEETSGDSWARNLADDSSENKVANLLWVDKYKPTSLKTIIGQQG 647
Query: 361 NQQLVKQLHTWLAHWNEK-FLDTGTKRNGK--KQNDASAEKAAILSGSPGMGKTTAAKLV 417
+Q +L WL +W++ D + GK ++D S+ KAA+LSG PG+GKTT A LV
Sbjct: 648 DQSCANKLLRWLQNWHKSPSEDRKHAKFGKFAGKDDGSSFKAALLSGPPGVGKTTTASLV 707
Query: 418 CQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKELVSN-EALSANMDRSKHPKT 474
CQ LGF +E+NASD+R K K +++ + N SIK S+ A S +M K
Sbjct: 708 CQELGFSYVELNASDTRSKNSLKDVVAESL---NNTSIKGFYSSGAAPSVSM------KH 758
Query: 475 VLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKP 533
LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR K++SLV+YC DLRF++P
Sbjct: 759 ALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRP 818
Query: 534 RKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQ 593
R ++I +M IA EGL++ A+ E+ N DIR ++ L + YD +
Sbjct: 819 RVEQIKGAMMSIAFKEGLKIPPPAMNEIILGSNQDIRQVLHNLSMWCARSKALTYDQAKA 878
Query: 594 RLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPS 651
+ KD + PF K+F G + + ++ DL D + PL +QENYI+ +P
Sbjct: 879 DSQRAKKDIKLGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYIHVKPV 938
Query: 652 SAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRET 711
+AG D K L L++RAA+SI DGD+ + QIR Q W L + ++ + ++P LM G
Sbjct: 939 AAGGDIKKHLMLLSRAADSICDGDLVDRQIRSKQNWSLLPTQAIYASVLPGELMRGYM-- 996
Query: 712 LEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQL 771
F F WLGK+S+ G++ RL++DL H S ++ + T+ +DY S + L
Sbjct: 997 -----TQFPTFPSWLGKHSSTGRHDRLVQDLALH--MSLRTYSSKRTINMDYLSHIRDAL 1049
Query: 772 TEPL 775
+PL
Sbjct: 1050 VQPL 1053
>gi|301779603|ref|XP_002925218.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 1-like
[Ailuropoda melanoleuca]
Length = 1146
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 248/662 (37%), Positives = 363/662 (54%), Gaps = 68/662 (10%)
Query: 164 SGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREE 223
S +P R + ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+E
Sbjct: 365 SVSPEDSEKRRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDE 424
Query: 224 AEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM 283
A+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT + EDGL ++IR
Sbjct: 425 AKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIRTMPGK 484
Query: 284 KA----LAQAESKKSVEKVAASLPKK-------SPQNIEA---KSTSAPK--APIERMKT 327
K+ +AE KK K+ + KK SP E+ KS PK + I+ +K
Sbjct: 485 KSKYEIAVEAEMKKEKSKLERTPQKKDQGKRKISPTKKESGSKKSRLTPKKDSSIKSVKK 544
Query: 328 VASPAKR----------------KGQNIQQSS-------LTWTEKYRPKTPNEIVG---N 361
S R + +++ S L W +KY+P + I+G +
Sbjct: 545 ETSVLWRCLDFKEEVAEGTNGDSRARSLADDSPENKVEDLLWVDKYKPTSLKTIIGQQGD 604
Query: 362 QQLVKQLHTWLAHWNEKFL-DTGTKRNGK--KQNDASAEKAAILSGSPGMGKTTAAKLVC 418
Q +L WL +W++ L D + GK ++D S+ KAA+LSG PG+GKTT A LVC
Sbjct: 605 QSCANKLLRWLRNWHKGPLEDQKRAKFGKFAGKDDGSSFKAALLSGPPGVGKTTTASLVC 664
Query: 419 QMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476
Q LG+ +E+NASD+R K K +++ + N SI SN A + +KH L
Sbjct: 665 QELGYSYVELNASDTRSKNSLKEIVAESL---NNTSITGFYSNGAAHVS---TKH---AL 715
Query: 477 IMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRK 535
IMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR
Sbjct: 716 IMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRV 775
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRL 595
++I +M IA EGL++ A+ E+ N DIR ++ L + YD +
Sbjct: 776 EQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADS 835
Query: 596 LSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSA 653
+ KD + PF K+F G + + ++ DL D + PL +QENYI+ +P +A
Sbjct: 836 HRAKKDIKLGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYIHVKPVAA 895
Query: 654 GRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLE 713
G D K L L++RAA+SI DGD+ + QIR Q W L + ++ + ++P LM G
Sbjct: 896 GGDMKKHLMLLSRAADSICDGDLVDRQIRSRQNWSLLPTQAIYASVLPGELMRGYM---- 951
Query: 714 QGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTE 773
F F WLGK+S+ GK+ R+++DL H S ++ + T+ +DY S + L +
Sbjct: 952 ---TQFPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTYSSKRTVNMDYLSHIRDALVQ 1006
Query: 774 PL 775
PL
Sbjct: 1007 PL 1008
>gi|224054240|ref|XP_002298161.1| predicted protein [Populus trichocarpa]
gi|222845419|gb|EEE82966.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/248 (75%), Positives = 215/248 (86%), Gaps = 14/248 (5%)
Query: 555 EIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVD--- 611
EIALEELA+RVNGD+RMA+NQLQYMSLS+SVI YDD+RQRL SAKDEDISPFTAVD
Sbjct: 2 EIALEELAERVNGDMRMALNQLQYMSLSMSVINYDDVRQRLQGSAKDEDISPFTAVDNML 61
Query: 612 -------KLFGFNGGKLRMDERIDLSMSDPDLVP--LLIQENYINYRPSSAGRDE--VKR 660
+LFGF+GGKLRMDERIDLSMSDPDL ++ QENYINYRPSS G+D+ +KR
Sbjct: 62 LIVIFGVRLFGFSGGKLRMDERIDLSMSDPDLEADSVIWQENYINYRPSSIGKDDNGMKR 121
Query: 661 LSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFN 720
+SLIARAAESI+DGDI NVQIRR +QWQLSQ+ SL+SCIIPAAL+HG RETLEQGERNFN
Sbjct: 122 MSLIARAAESIADGDIINVQIRRYRQWQLSQTGSLSSCIIPAALLHGSRETLEQGERNFN 181
Query: 721 RFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPK 780
RFGGWLGKNST GKN RLLEDLH H LASR+S +GR+TLRLDY ++LLKQLT+PLRVLPK
Sbjct: 182 RFGGWLGKNSTAGKNSRLLEDLHVHLLASRESNMGRETLRLDYLTVLLKQLTDPLRVLPK 241
Query: 781 DELLRKLL 788
DE + K++
Sbjct: 242 DEAVEKVV 249
>gi|281342306|gb|EFB17890.1| hypothetical protein PANDA_014667 [Ailuropoda melanoleuca]
Length = 1119
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 248/664 (37%), Positives = 363/664 (54%), Gaps = 71/664 (10%)
Query: 164 SGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREE 223
S +P R + ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+E
Sbjct: 364 SVSPEDSEKRRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDE 423
Query: 224 AEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM 283
A+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT + EDGL ++IR
Sbjct: 424 AKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIRTMPGK 483
Query: 284 KA----LAQAESKKSVEKVAASLPKK-------SPQNIEA---KSTSAPK--APIERMKT 327
K+ +AE KK K+ + KK SP E+ KS PK + I+ +K
Sbjct: 484 KSKYEIAVEAEMKKEKSKLERTPQKKDQGKRKISPTKKESGSKKSRLTPKKDSSIKSVKK 543
Query: 328 VASPAKR----------------KGQNIQQSS-------LTWTEKYRPKTPNEIVG---N 361
S R + +++ S L W +KY+P + I+G +
Sbjct: 544 ETSVLWRCLDFKEEVAEGTNGDSRARSLADDSPENKVEDLLWVDKYKPTSLKTIIGQQGD 603
Query: 362 QQLVKQLHTWLAHWNEKFLDTGTKRNGK-----KQNDASAEKAAILSGSPGMGKTTAAKL 416
Q +L WL +W++ L+ KR K ++D S+ KAA+LSG PG+GKTT A L
Sbjct: 604 QSCANKLLRWLRNWHKGPLE-DQKRAAKFGKFAGKDDGSSFKAALLSGPPGVGKTTTASL 662
Query: 417 VCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474
VCQ LG+ +E+NASD+R K K +++ + N SI SN A + +KH
Sbjct: 663 VCQELGYSYVELNASDTRSKNSLKEIVAESL---NNTSITGFYSNGAAHVS---TKH--- 713
Query: 475 VLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKP 533
LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR K++SLV+YC DLRF++P
Sbjct: 714 ALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRP 773
Query: 534 RKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQ 593
R ++I +M IA EGL++ A+ E+ N DIR ++ L + YD +
Sbjct: 774 RVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKA 833
Query: 594 RLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPS 651
+ KD + PF K+F G + + ++ DL D + PL +QENYI+ +P
Sbjct: 834 DSHRAKKDIKLGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYIHVKPV 893
Query: 652 SAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRET 711
+AG D K L L++RAA+SI DGD+ + QIR Q W L + ++ + ++P LM G
Sbjct: 894 AAGGDMKKHLMLLSRAADSICDGDLVDRQIRSRQNWSLLPTQAIYASVLPGELMRGYM-- 951
Query: 712 LEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQL 771
F F WLGK+S+ GK+ R+++DL H S ++ + T+ +DY S + L
Sbjct: 952 -----TQFPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTYSSKRTVNMDYLSHIRDAL 1004
Query: 772 TEPL 775
+PL
Sbjct: 1005 VQPL 1008
>gi|355687229|gb|EHH25813.1| Activator 1 subunit 1, partial [Macaca mulatta]
Length = 1147
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 240/650 (36%), Positives = 354/650 (54%), Gaps = 69/650 (10%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 380 AYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGN 439
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT + EDGL ++IR K+ + + ++K
Sbjct: 440 VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGKKSKYEIAVETEMKK- 498
Query: 299 AASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKR------------------------ 334
+ L + +N++ K +P K +KR
Sbjct: 499 ESKLERTPQKNVQGKRKISPSKKESESKKSKPTSKRDSLAKTIKKETDVFWRGLDFKEQV 558
Query: 335 --------KGQNIQQSS-------LTWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHWN 376
K +N+ S L W +KY+P + I+G +Q +L WL +W+
Sbjct: 559 AEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWH 618
Query: 377 EKFLDTGTKRNGKK------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
+ + K++ K ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NA
Sbjct: 619 KS--SSEDKKHAAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNA 676
Query: 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DR 489
SD+R K+ K SN SIK SN A S S K LIMDEVDGM+ DR
Sbjct: 677 SDTRSKSSLKAIVAESLSNT-SIKGFYSNGAAS-----SVSTKHALIMDEVDGMAGNEDR 730
Query: 490 GGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAE 549
GGI +LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I +M IA E
Sbjct: 731 GGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKE 790
Query: 550 GLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTA 609
GL++ A+ E+ N DIR ++ L + YD + + KD + PF
Sbjct: 791 GLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDV 850
Query: 610 VDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARA 667
K+F G + + ++ DL D + PL +QENYI+ +P +AG D K L L++RA
Sbjct: 851 ARKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRA 910
Query: 668 AESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLG 727
A+SI DGD+ + QIR Q W L + ++ + ++P LM G + Q F F GWLG
Sbjct: 911 ADSICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRG---FMTQ----FPTFPGWLG 963
Query: 728 KNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRV 777
K+S+ GK+ R+++DL H S ++ + T+ +DY S L L +PL +
Sbjct: 964 KHSSTGKHGRIVQDLALH--MSLRTYSSKRTVNMDYLSHLRDALVQPLTL 1011
>gi|387018040|gb|AFJ51138.1| Replication factor C subunit 1-like [Crotalus adamanteus]
Length = 1132
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 229/645 (35%), Positives = 346/645 (53%), Gaps = 71/645 (11%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ +F R+ P G KE+P+G +CL G+TFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 377 AYRSFLNREGPKALGSKEIPQGGENCLEGMTFVITGVLESIERDEAKSLIERYGGKVTGN 436
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
+SKKTNYL+ D +K KA LGT + EDGLFD+IR + ++ + ++ +K
Sbjct: 437 ISKKTNYLVKGRDCGVSKCEKASALGTKIIDEDGLFDLIRNTPGKRSKYEIAAETEAKKT 496
Query: 299 AASL--------PKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQ--------- 341
P K N K++ A K R S R+G + +Q
Sbjct: 497 KTETKAEKKKVSPAKPDSNCRKKTSLAEKTDSFRSVKQESGTVRRGLDFEQKLPEEEKTV 556
Query: 342 ----------------SSLTWTEKYRPKTPNEIVGN---QQLVKQLHTWLAHWNEKFLDT 382
L W +KY+P + I+G Q ++L WL +W + +
Sbjct: 557 PAKEKSSVRESNKNRGEVLLWVDKYKPTSIKAIIGQQSEQSCAQKLLRWLKNWQKNSSED 616
Query: 383 GTKRNGK--KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK 440
++GK +++D + KAA+LSG+PG+GKTT A LVC+ LG +E+NASD+R K
Sbjct: 617 QQVKSGKFGRKDDGAQSKAALLSGAPGVGKTTTASLVCEELGLSYVELNASDTRSK---- 672
Query: 441 ISKGIGGSNANSIKELV-------SNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGI 492
NS+KE+V S + + RS K VLIMDEVDGM+ DRGGI
Sbjct: 673 ----------NSLKEVVAESLNNTSIKGFCSGTSRSVSAKHVLIMDEVDGMAGNEDRGGI 722
Query: 493 ADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLE 552
+LI IK +K+PIIC+CNDR K++SL +YC DLRF +PR ++I +M IA EGL+
Sbjct: 723 QELIDLIKHTKVPIICMCNDRNHPKIRSLAHYCFDLRFPRPRVEQIKGAMMSIAFKEGLK 782
Query: 553 VNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDK 612
+ A+ EL N DIR ++ L + YD +++ + KD + PF V K
Sbjct: 783 IPPPAMSELILAANQDIRQVLHNLSLWCARDKTLTYDGVKEDAGKAKKDIKLGPFDVVRK 842
Query: 613 LF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAES 670
+F + + ++ DL D L PL +QENY++ +P++AG + K L L+++ A+S
Sbjct: 843 VFAKAEEASHMSLIDKADLFFHDYSLGPLFVQENYVHVKPAAAGNNVAKELILLSKTADS 902
Query: 671 ISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNS 730
I DGD+ + QIR Q W L + ++ S ++P LM G + F F WLGK S
Sbjct: 903 ICDGDLVDRQIRTRQNWSLLPTQAIYSSVLPGELMRGYMQ-------EFPSFPSWLGKFS 955
Query: 731 TMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
+ GK+ R++++L H S ++ + + LDY S L + PL
Sbjct: 956 STGKHDRIVQELSRH--MSLRTHASKRAINLDYLSYLRDAVVRPL 998
>gi|344279142|ref|XP_003411350.1| PREDICTED: replication factor C subunit 1 [Loxodonta africana]
Length = 1149
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 264/771 (34%), Positives = 395/771 (51%), Gaps = 83/771 (10%)
Query: 67 EKEELPAKRKAEKDDGKSVRSSPLKKFHKADDDDDDFVP---------PSVKKNSVGATP 117
EK + P K K E+ + SSP K+ + + P PS K S
Sbjct: 262 EKHKYPHKVKTEQFSDERKNSSPKKQPKCESSKESEPHPKSSAHKTGEPSPGKASSKLAL 321
Query: 118 SKKLKSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGR 177
KK + GS R V ++ E +T++P K+ R + S +P +
Sbjct: 322 LKKRERGSYREVEPMGSKRQENAGELKGETKTPKKT--RSSPTKKESTSPEDSEKKRANY 379
Query: 178 GGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTG 237
+ ++ R+ P G KE+P+GA +CL GL FVI+G L+S+ER+EA+ LI+R+GG+VTG
Sbjct: 380 QAYRSYLSREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTG 439
Query: 238 SVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEK 297
+VSKKTNYL+ D KS KA LGT + EDGL ++IR K+ + + ++K
Sbjct: 440 NVSKKTNYLVMGRDSGQCKSDKAAALGTKIIDEDGLLNLIRTMPGKKSKYEIAVEAEMKK 499
Query: 298 VAASLPKKSPQNIEAKSTSAP-KAPIERMKTVASP--------AKRKGQNIQQS------ 342
+ L + +N + K +P K E K +P K++ Q+S
Sbjct: 500 EKSRLERTPSKNDQGKRKLSPNKKDSESKKNKLTPKRDSSLNSIKKETSAFQKSLDFEEQ 559
Query: 343 ------------------------SLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHW 375
SL W +KY+P + I+ G+Q +L WL +W
Sbjct: 560 VAEETNVNSGARNLADDSSGHKVESLLWVDKYKPTSLKAIIGQQGDQSCANKLLRWLRNW 619
Query: 376 ------NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429
++K K GK +D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+N
Sbjct: 620 HKSPSEDKKHAAKFGKSAGK--DDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELN 677
Query: 430 ASDSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG 487
ASD+R K K +S+ + N SIK S+ A+ S K LIMDEVDGM+
Sbjct: 678 ASDTRSKNSLKEIVSESL---NNTSIKGFYSSGAV-----HSPSAKHALIMDEVDGMAGN 729
Query: 488 -DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIA 546
DRGGI +LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I +M +A
Sbjct: 730 EDRGGIQELIGLIKHTKIPIICMCNDRSHPKVRSLVHYCFDLRFQRPRVEQIKGAMMSVA 789
Query: 547 NAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISP 606
EGL++ A+ E+ N DIR ++ L + YD + + KD + P
Sbjct: 790 FKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCAQSKALTYDQAKVDSNRAKKDIKLGP 849
Query: 607 FTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLI 664
F K+F G + + +++DL D + PL +QENY++ +P +A D K L L+
Sbjct: 850 FDVARKVFAAGEETAHMSLMDKLDLFFHDYSIAPLFVQENYVHVKPIAAEGDVKKHLMLL 909
Query: 665 ARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGG 724
+RAA+SI DGD+ + QIR Q W L + ++ + ++P LM G F F
Sbjct: 910 SRAADSICDGDLVDRQIRSKQNWSLLPTQAIYASVLPGELMRGYM-------TQFPTFPS 962
Query: 725 WLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
WLGK S+MG++ R+++DL H S ++ + T+ +DY S + L +PL
Sbjct: 963 WLGKYSSMGRHDRVVQDLALH--MSLRTYSSKRTINMDYLSHIRDALVQPL 1011
>gi|432846347|ref|XP_004065892.1| PREDICTED: replication factor C subunit 1-like [Oryzias latipes]
Length = 1152
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 239/659 (36%), Positives = 343/659 (52%), Gaps = 82/659 (12%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
F NF R P G KE+P+GA +CL G FV++G L+S+ERE+A+ LI+R+GG+VTG+
Sbjct: 382 AFKNFLNRDGPRALGSKEIPKGAENCLEGCMFVLTGVLESMEREDAKSLIERYGGKVTGN 441
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKAL----AQAESKKS 294
VSKKT YL+ D +K KA+ LGT L EDGL ++IR K++ A+AE K +
Sbjct: 442 VSKKTTYLVQGRDSGVSKLEKAESLGTQILDEDGLLELIRTKPGKKSVYEIAAEAECKAT 501
Query: 295 VEKVAASLPKKSPQNIEAKSTS-----APKAP-------IERMKTVASPAKRKGQNIQQ- 341
K S K+ + S S +P P +R ++P R + +
Sbjct: 502 KTKTPPSQASKNTPKTQKISPSKGNSRSPHTPSPSKTGRAQRSSEGSTPPGRGAAHTARR 561
Query: 342 ------------------------SSLTWTEKYRPKTPNEIVGNQ---QLVKQLHTWLAH 374
SL W +KYRP++ ++G Q +L WL +
Sbjct: 562 ELGLSPSTSSSAPKVASSSGTAEGPSLLWVDKYRPQSLKAVIGQQGEQSCANKLLRWLQN 621
Query: 375 WNEKFLDTGTKRNGKK-----QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429
W + K K ++D S KAA+LSG PG+GKTT A LVC+ LGF +E+N
Sbjct: 622 WYKNHSGGAGKPAAAKFSKFGKDDGSTYKAALLSGPPGVGKTTTAALVCEELGFSYVEMN 681
Query: 430 ASDSRGKADAKISKGIGGSNANSIKELVSN-------EALSANMDRSKHPKTVLIMDEVD 482
AS +R K NS+KE+VS E ++ + VLIMDEVD
Sbjct: 682 ASCTRSK--------------NSLKEVVSESLNNTSIEDFYKGTSQTVSSRHVLIMDEVD 727
Query: 483 GMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
GM+ DRGG+ +LI I+ SKIPIIC+CNDR K++SL NYC DLRF++PR ++I
Sbjct: 728 GMAGNEDRGGMQELIGLIRTSKIPIICMCNDRNHPKIRSLSNYCFDLRFQRPRVEQIKGA 787
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD 601
+M IA EG+++ AL E+ N D+R I+ L S V+ YD + + KD
Sbjct: 788 MMSIAYKEGVKIPPPALNEIILASNQDVRQVIHNLSMWSAKDKVMTYDQCKSDAARARKD 847
Query: 602 EDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
+ PF K+F G + + ++ DL D L PL +QENY+N RP++AG D
Sbjct: 848 MKLGPFDVCRKVFTRGEETDHMSLIDKSDLFFHDYSLAPLFVQENYVNVRPAAAGGDMKS 907
Query: 660 RLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNF 719
L L+++ A+SISDGD+ + +IR Q W L + ++ + ++P LM G +F
Sbjct: 908 HLVLLSKTADSISDGDLVDRKIRSGQNWSLLPTQAIYASVLPGELMRGYMT-------HF 960
Query: 720 NRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVL 778
F WLGKNS+ K+ R++++L H S K+ R L LDY L L PL+ L
Sbjct: 961 PVFPSWLGKNSSTSKHSRIMQELSSH--MSLKTMGSRQALNLDYLPFLRLALLAPLQRL 1017
>gi|355749220|gb|EHH53619.1| Activator 1 subunit 1 [Macaca fascicularis]
Length = 1166
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 238/650 (36%), Positives = 352/650 (54%), Gaps = 69/650 (10%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 399 AYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGN 458
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT + EDGL ++IR K+ + + ++K
Sbjct: 459 VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGKKSKYEIAVETEMKK- 517
Query: 299 AASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKR------------------------ 334
+ L + +N++ K +P K +KR
Sbjct: 518 ESKLERTPQKNVQGKRKISPSKKESESKKSKPTSKRDSLAKTIKKETDVFWRGLDFKEQV 577
Query: 335 --------KGQNIQQSS-------LTWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHWN 376
K +N+ S L W +KY+P + I+G +Q +L WL +W+
Sbjct: 578 AEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWH 637
Query: 377 EKFLDTGTKRNGKK------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
+ + K++ K ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NA
Sbjct: 638 KS--SSEDKKHAAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNA 695
Query: 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DR 489
SD+R K+ K SN SIK SN A S S K LIMDEVDGM+ DR
Sbjct: 696 SDTRSKSSLKAIVAESLSNT-SIKGFYSNGAAS-----SVSTKHALIMDEVDGMAGNEDR 749
Query: 490 GGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAE 549
GGI +LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I +M IA E
Sbjct: 750 GGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKE 809
Query: 550 GLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTA 609
GL++ A+ E+ N DIR ++ L + YD + + KD + PF
Sbjct: 810 GLKIPPPAMNEIILGANQDIRQVLHNLSMWCAQSKALTYDQAKADSHRAKKDIKMGPFDV 869
Query: 610 VDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARA 667
K+F G + + ++ DL D + PL +QENYI+ +P +AG D K L L+++A
Sbjct: 870 ARKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSKA 929
Query: 668 AESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLG 727
A+SI DGD+ + QIR Q W L + ++ + ++P LM G F F GWLG
Sbjct: 930 ADSICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRGFM-------TQFPTFPGWLG 982
Query: 728 KNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRV 777
K+S+ GK+ R+++DL H S ++ + T+ +DY S L L +PL +
Sbjct: 983 KHSSTGKHGRIVQDLALH--MSLRTYSSKRTVNMDYLSHLRDALVQPLTL 1030
>gi|410917482|ref|XP_003972215.1| PREDICTED: replication factor C subunit 1-like [Takifugu rubripes]
Length = 1157
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 235/659 (35%), Positives = 350/659 (53%), Gaps = 81/659 (12%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ N+ R+ P G KE+P+GA +CL G FV++G L+S+ER+E + LI+R+GG+VTG+
Sbjct: 384 AYRNYLNREGPRALGSKEIPQGAENCLEGCVFVLTGVLESMERDETKSLIERYGGKVTGN 443
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMK-----ALAQAESKK 293
+SK+T YL+ D +K KA+ LGT L EDGL ++IR +KP K A+AE K
Sbjct: 444 ISKRTTYLVQGRDSGVSKLEKAESLGTKILDEDGLLELIR-TKPGKKSKYEIAAEAEIKA 502
Query: 294 SVEKVAASLPKKSP--QNIEAK--STSAPKAP-----------IERMKTVASPAKR-KGQ 337
S + + K +P Q I ++++P P R + +P+ R Q
Sbjct: 503 SKTRTPSKASKSTPTAQKISPSKGNSTSPHTPSPSKTSLAQGHTARTREARTPSGRGSAQ 562
Query: 338 NIQQS-------------------------SLTWTEKYRPKTPNEIVGNQ---QLVKQLH 369
+++ +L W +KYRP++ ++G Q +L
Sbjct: 563 TVRRELGLSSSNTSSSPPDTSVPRQTGGEVALLWVDKYRPRSLKAVIGQQGEQSCANKLL 622
Query: 370 TWLAHWNEKFLDTGTKRNGKK------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423
WL +W+ K K ++D S KAA+LSG PG+GKTT A LVC+ LGF
Sbjct: 623 RWLQNWHRHHAGGALKPPAAKFGKFGGKDDGSGYKAALLSGPPGVGKTTTASLVCEELGF 682
Query: 424 QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSN---EALSANMDRSKHPKTVLIMDE 480
+E+NAS +R K + K + + E V+N E ++ K VLIMDE
Sbjct: 683 SYVEMNASCTRSKNNLK----------DVVAESVNNTSIENFYKGTSQTVSNKHVLIMDE 732
Query: 481 VDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIA 539
VDGM+ DRGGI +LI IK SKIPIIC+CNDR K++SL NYC DLRF++PR ++I
Sbjct: 733 VDGMAGNEDRGGIQELIGLIKSSKIPIICMCNDRNHMKIRSLSNYCFDLRFQRPRVEQIK 792
Query: 540 KRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSA 599
+M IA EG+ + AL E+ N D+R ++ L S + V+ YD + +
Sbjct: 793 AAMMSIAFKEGINIRPPALNEIILASNQDVRQVMHNLSMWSATDKVMSYDQCKSDAAKAR 852
Query: 600 KDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDE 657
KD + PF K+F G ++ + ++ DL D L PL +QENY+N RP++AG +
Sbjct: 853 KDMKMGPFDVCRKVFAAGEETARMSLIDKSDLFFHDYSLAPLFVQENYLNVRPAAAGGNL 912
Query: 658 VKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGER 717
L L+++AA+SISDGD+ + +IR Q W L + ++ + ++P LM G
Sbjct: 913 KSHLMLLSKAADSISDGDLVDKRIRSGQNWSLLPTQAIYASVLPGELMRGYMS------- 965
Query: 718 NFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLR 776
F F WLGKNS+ GK+ R++++L H S K+ R + LDY L L PL+
Sbjct: 966 QFPSFPSWLGKNSSAGKHSRIVQELASH--MSLKTMSSRSAVNLDYLHYLRHALLSPLQ 1022
>gi|73951876|ref|XP_536259.2| PREDICTED: replication factor C subunit 1 [Canis lupus familiaris]
Length = 1145
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 247/662 (37%), Positives = 361/662 (54%), Gaps = 67/662 (10%)
Query: 164 SGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREE 223
S +P R + ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+E
Sbjct: 363 SISPEDSEKRRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDE 422
Query: 224 AEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM 283
A+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT + EDGL ++IR
Sbjct: 423 AKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIRTMPGK 482
Query: 284 KA----LAQAESKKSVEKVAASLPKK-------SPQNIEAKSTSAPKAP-----IERMKT 327
K+ +AE KK K+ + KK SP E++S + P I+ +K
Sbjct: 483 KSKYEIAVEAEMKKEKSKLERTPQKKDQGKRKISPTKKESESKRSRLTPKKDSSIKSVKK 542
Query: 328 VASPAKR----------------KGQNIQQSS-------LTWTEKYRPKTPNEIVG---N 361
S R + +N+ S L W +KY+P + I+G +
Sbjct: 543 ETSVLWRCLNFEEQVAEETNDDSRARNLAGDSSENKVENLLWVDKYKPTSLKTIIGQQGD 602
Query: 362 QQLVKQLHTWLAHWNE-KFLDTGTKRNGK--KQNDASAEKAAILSGSPGMGKTTAAKLVC 418
Q +L WL +W+ D + GK ++D S+ KAA+LSG PG+GKTT A LVC
Sbjct: 603 QSCANKLLRWLQNWHRGPPEDKKRAKFGKFAGKDDGSSFKAALLSGPPGVGKTTTASLVC 662
Query: 419 QMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476
Q LG+ +E+NASD+R K K +++ + N SI SN A A+ SKH L
Sbjct: 663 QELGYSYVELNASDTRSKNSLKEVVAESL---NNTSITGFYSNGA--AHSVGSKH---AL 714
Query: 477 IMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRK 535
IMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR
Sbjct: 715 IMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRV 774
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRL 595
++I +M IA EGL++ A+ E+ N DIR ++ L + YD +
Sbjct: 775 EQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADS 834
Query: 596 LSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSA 653
+ KD + PF K+F G + + ++ DL D + PL +QENY++ +P +A
Sbjct: 835 HRAKKDIRLGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYLHVKPVAA 894
Query: 654 GRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLE 713
G D K L L++RAA+SI DGD+ + QIR Q W L + ++ + ++P LM G
Sbjct: 895 GGDMKKHLMLLSRAADSICDGDLVDRQIRSKQNWSLLPTQAIYASVLPGELMRGYM---- 950
Query: 714 QGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTE 773
F F WLGK+S+ GK+ R+++DL H S ++ + T+ +DY S + L +
Sbjct: 951 ---TQFPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTYSSKRTVNMDYLSHIRDALVQ 1005
Query: 774 PL 775
PL
Sbjct: 1006 PL 1007
>gi|302564339|ref|NP_001082960.2| replication factor C subunit 1 [Danio rerio]
Length = 1147
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 258/730 (35%), Positives = 385/730 (52%), Gaps = 93/730 (12%)
Query: 107 SVKKNSVGATPSKKL---KSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGGRGA 163
S KK + T S++ K+ S A KS ++ + E V SP K
Sbjct: 311 SPKKEPISPTSSERAATPKTASASAGMAKSRNLSTPKSESVPSKTSPTKPE--------- 361
Query: 164 SGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREE 223
+ +P + + ++ R+ P G K++P+G +CL G FV++G L+S+ER+E
Sbjct: 362 NTSPDDLEKKRANSSAYRSYLNREGPRALGSKDIPQGEENCLEGCVFVLTGVLESMERDE 421
Query: 224 AEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM 283
A+ LI+R+GG+VTG+VS+KT YL+ D +K+ KA+ GT + ED L D+IR +KP
Sbjct: 422 AKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAESFGTKIINEDELLDLIR-TKPG 480
Query: 284 KA-----LAQAESKKSVE-------KVAASLPKKSPQNI----------EAKSTSAPKA- 320
K A+AE+K S KVA+S K +PQ ++K SA K+
Sbjct: 481 KKSKYEIAAEAENKSSKTRTPDSRGKVASSAKKATPQGPSPNKRSSSGGKSKPGSASKSG 540
Query: 321 -------------PIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVG---NQQL 364
++ KT ASP SSL W +KYRP++ ++G +Q
Sbjct: 541 ARGASCSEVKKSLSFDQTKT-ASPVSHSAPENDGSSLLWVDKYRPRSLKNLIGQQGDQSC 599
Query: 365 VKQLHTWLAHWNE-----------KFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTA 413
+L WL W++ KF G+K +D S KAA+LSG PG+GKTT
Sbjct: 600 ANKLLRWLQSWHKHHSGNAKAPAPKFGKFGSK------DDGSGFKAALLSGPPGVGKTTT 653
Query: 414 AKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKH 471
A LVC+ LG+ +E+NAS +R K K I++ + N SIK + + + + SKH
Sbjct: 654 AALVCEELGYSYVEMNASCTRSKNSLKEVIAESL---NNTSIKNFYTGASQTVS---SKH 707
Query: 472 PKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRF 530
VLIMDEVDGM+ DRGGI ++I IK SKIPIIC+CNDR QK++SL NYC DLRF
Sbjct: 708 ---VLIMDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRF 764
Query: 531 RKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDD 590
++PR ++I +M IA EGL++ AL E+ N DIR ++ L S V+ YD
Sbjct: 765 QRPRVEQIKGAMMSIAFKEGLKIPPPALNEVILASNQDIRQVLHNLSMWSAKDKVMTYDQ 824
Query: 591 IRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINY 648
+ ++ KD + PF K+F G + + ++ DL D L PL +QENY++
Sbjct: 825 AKADANNAKKDMKLGPFDVCRKVFALGEETAHMSLIDKSDLFFHDYSLAPLFVQENYLHV 884
Query: 649 RPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQ 708
RP++AG + L L+++ A+SI DGD+ + QIR Q W L + ++ + ++P LM G
Sbjct: 885 RPAAAGGNLKSHLVLLSKTADSICDGDLVDRQIRSKQTWSLLPTQAIYASVLPGELMRGY 944
Query: 709 RETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLL 768
F F WLGK S+ GK+ R++++L H S K+ ++ + LDY L
Sbjct: 945 MS-------QFPNFPSWLGKFSSSGKHSRIIQELASH--MSLKTLSSKEAVNLDYLPYLR 995
Query: 769 KQLTEPLRVL 778
+ +PL+ L
Sbjct: 996 SAVLKPLQSL 1005
>gi|443730009|gb|ELU15704.1| hypothetical protein CAPTEDRAFT_175237 [Capitella teleta]
Length = 730
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 223/607 (36%), Positives = 340/607 (56%), Gaps = 35/607 (5%)
Query: 177 RGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVT 236
+G + ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER E++ LI+R+GG+VT
Sbjct: 11 KGAYRSYLSREGPRALGSKEIPQGAENCLEGLTFVITGVLESMERSESQSLIERYGGKVT 70
Query: 237 GSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVE 296
GS+SK+T+Y++ D +K KA +LGT L EDGL D+IR L SK +E
Sbjct: 71 GSLSKRTSYVVVGRDAGESKMAKANQLGTKQLDEDGLLDLIR------KLPGKTSKYEIE 124
Query: 297 KVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPN 356
S K S ++ S S K +M + AK+ SL W +KY+P+T
Sbjct: 125 AAKQSQSKPSTAKFKS-SPSLAKISQSKMSSAKPAAKKATDEGSSQSLMWVDKYKPQTLK 183
Query: 357 EIV---GNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTA 413
+I+ G++ ++L WL +W+ + +D S KAA+LSG PG+GKTT
Sbjct: 184 QIIGQTGDKSNARKLMNWLQNWHRNISSGKKPAFNRFSDDGSGFKAALLSGPPGVGKTTT 243
Query: 414 AKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL----SANMDRS 469
A LVC+ GF +E+NASD+R K K + + E ++N L + S
Sbjct: 244 ATLVCKEAGFSFVELNASDTRSKRKLK----------DEVSESLNNHTLVDFFGGQVTPS 293
Query: 470 KHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDL 528
+ + L+MDEVDGM+ DRGG+A+LI IK SKIP+IC+CNDR QK++SL N+C DL
Sbjct: 294 EGQRHCLVMDEVDGMAGNEDRGGVAELIQLIKNSKIPVICMCNDRNHQKIRSLANHCFDL 353
Query: 529 RFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKY 588
RF++PR ++I +M +A EGL+++ AL+E+ N D+R ++ L + + + Y
Sbjct: 354 RFQRPRVEQIKAAMMSVAFKEGLKISPPALQEVIVAANQDVRQIMHNLSMWTSTDRNLSY 413
Query: 589 DDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINY 648
D + + KD + PF ++F G ++ + ++ DL D PL +QENY +
Sbjct: 414 DQAKSDANKAKKDAHLGPFDVCRQVFA-GGERMSVIDKTDLFFQDYSFGPLFVQENYPSC 472
Query: 649 RPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQ 708
P +A D ++ L+++AA+SI+ GD+ + QIR Q W L + ++ S ++P M G
Sbjct: 473 TPFAARGDMRMQMKLLSQAADSIAQGDLVDRQIRSTQNWGLLPTQAIFSTVLPGEAMKGS 532
Query: 709 RETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLL 768
+ Q F WLGKNST KN R L++L H K+ + + +DY LL
Sbjct: 533 IGQMIQ-------FPQWLGKNSTRNKNDRTLQELRTH--MGLKNPADKHEINMDYLPLLR 583
Query: 769 KQLTEPL 775
K LT+PL
Sbjct: 584 KALTQPL 590
>gi|403271300|ref|XP_003927570.1| PREDICTED: replication factor C subunit 1 [Saimiri boliviensis
boliviensis]
Length = 1148
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 244/681 (35%), Positives = 366/681 (53%), Gaps = 73/681 (10%)
Query: 147 TESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLG 206
T++P K+ + + S +P + + ++ R+ P G KE+P+GA +CL
Sbjct: 351 TKTPKKT--KSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLE 408
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT
Sbjct: 409 GLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTK 468
Query: 267 FLTEDGLFDMIRA--SKPMKALAQAESKKSVEKVAASLPKKSPQ---------------- 308
+ EDGL ++IR K K E++ E P+K+ Q
Sbjct: 469 IIDEDGLLNLIRTMPGKKSKYEIAVEAEMKKESKLERTPQKNAQGKRKISPSKKESESKK 528
Query: 309 -NIEAKSTSAPKAP----------IERMKTVA--SPAKRKGQNIQQSS-------LTWTE 348
+ +K S+ K ++ + VA + K +N+ S L W +
Sbjct: 529 SKLTSKRDSSAKTIKKETDAFWRGLDFKEQVAEETSGDSKARNLADDSSENKMENLLWVD 588
Query: 349 KYRPKTPNEIVG---NQQLVKQLHTWLAHWNEKFLDTGTKRNGKK------QNDASAEKA 399
KY+P + I+G +Q +L WL +W++ + K++ K ++D S+ KA
Sbjct: 589 KYKPTSLKTIIGQQGDQSCANKLLRWLRNWHKS--SSEDKKHAPKFGKFAGKDDGSSFKA 646
Query: 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKELV 457
+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K K +++ + N SIK
Sbjct: 647 VLLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAIVAESL---NNTSIKGFY 703
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQ 516
SN S S K LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR
Sbjct: 704 SNGVAS-----SVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHP 758
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
K++SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++ L
Sbjct: 759 KIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNL 818
Query: 577 QYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDP 634
+ YD + + KD + PF K+F G + + + ++ DL D
Sbjct: 819 SMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEDTAHMSLVDKSDLFFHDY 878
Query: 635 DLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
+ PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L + +
Sbjct: 879 SIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPTQA 938
Query: 695 LASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKL 754
+ + ++P LM G F F WLGK+S+ GK+ R+++DL H S ++
Sbjct: 939 IYASVLPGELMRGYM-------TQFPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTYS 989
Query: 755 GRDTLRLDYFSLLLKQLTEPL 775
+ T+ +DY S L L +PL
Sbjct: 990 SKRTVNMDYLSHLRDALVQPL 1010
>gi|402869167|ref|XP_003898638.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 1 [Papio
anubis]
Length = 1147
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 239/648 (36%), Positives = 352/648 (54%), Gaps = 69/648 (10%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 380 AYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGN 439
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT + EDGL ++IR K+ + + ++K
Sbjct: 440 VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGKKSKYEIAVETEMKK- 498
Query: 299 AASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKR------------------------ 334
+ L + +N++ K +P K +KR
Sbjct: 499 ESKLERTPQKNVQGKRKISPSKKESESKKSKPTSKRDSLAKTIKKETDVFWRGLDFKEQV 558
Query: 335 --------KGQNIQQSS-------LTWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHWN 376
K +N+ S L W +KY+P + I+G +Q +L WL +W+
Sbjct: 559 AEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWH 618
Query: 377 EKFLDTGTKRNGKK------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
+ + K++ K ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NA
Sbjct: 619 KS--SSEDKKHAAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNA 676
Query: 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DR 489
SD+R K+ K SN SIK SN A S S K LIMDEVDGM+ DR
Sbjct: 677 SDTRSKSSLKAIVAESLSNT-SIKGFYSNGAAS-----SVSTKHALIMDEVDGMAGNEDR 730
Query: 490 GGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAE 549
GGI +LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I +M IA E
Sbjct: 731 GGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKE 790
Query: 550 GLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTA 609
GL++ A+ E+ N DIR ++ L + YD + + KD + PF
Sbjct: 791 GLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDV 850
Query: 610 VDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARA 667
K+F G + + ++ DL D + PL +QENYI+ +P +AG D K L L++RA
Sbjct: 851 ARKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRA 910
Query: 668 AESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLG 727
A+SI DGD+ + QIR Q W L + ++ + ++P LM G + Q F F WLG
Sbjct: 911 ADSICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRG---FMTQ----FPTFPSWLG 963
Query: 728 KNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
K+S+ GK+ R+++DL H S ++ + T+ +DY S L L +PL
Sbjct: 964 KHSSTGKHDRIVQDLALH--MSLRTYSSKRTVNMDYLSHLRDALVQPL 1009
>gi|109074009|ref|XP_001091287.1| PREDICTED: replication factor C subunit 1 isoform 3 [Macaca mulatta]
Length = 1148
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 239/650 (36%), Positives = 353/650 (54%), Gaps = 69/650 (10%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 381 AYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGN 440
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT + EDGL ++IR K+ + + ++K
Sbjct: 441 VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGKKSKYEIAVETEMKK- 499
Query: 299 AASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKR------------------------ 334
+ L + +N++ K +P K +KR
Sbjct: 500 ESKLERTPQKNVQGKRKISPSKKESESKKSKPTSKRDSLAKTIKKETDVFWRGLDFKEQV 559
Query: 335 --------KGQNIQQSS-------LTWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHWN 376
K +N+ S L W +KY+P + I+G +Q +L WL +W+
Sbjct: 560 AEETSGDSKARNLADGSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWH 619
Query: 377 EKFLDTGTKRNGKK------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
+ + K++ K ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NA
Sbjct: 620 KS--SSEDKKHAAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNA 677
Query: 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DR 489
SD+R K+ K SN SIK SN A S S K LIMDEVDGM+ DR
Sbjct: 678 SDTRSKSSLKAIVAESLSNT-SIKGFYSNGAAS-----SVSTKHALIMDEVDGMAGNEDR 731
Query: 490 GGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAE 549
GGI +LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I +M IA E
Sbjct: 732 GGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKE 791
Query: 550 GLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTA 609
GL++ A+ E+ N DIR ++ L + YD + + KD + PF
Sbjct: 792 GLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDV 851
Query: 610 VDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARA 667
K+F G + + ++ DL D + PL +QENYI+ +P +AG D K L L++RA
Sbjct: 852 ARKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRA 911
Query: 668 AESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLG 727
A+SI DGD+ + QIR Q W L + ++ + ++P LM G + Q F F WLG
Sbjct: 912 ADSICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRG---FMTQ----FPTFPSWLG 964
Query: 728 KNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRV 777
K+S+ GK+ R+++DL H S ++ + T+ +DY S L L +PL +
Sbjct: 965 KHSSTGKHDRIVQDLALH--MSLRTYSSKRTVNMDYLSHLRDALVQPLTL 1012
>gi|384948610|gb|AFI37910.1| replication factor C subunit 1 isoform 1 [Macaca mulatta]
Length = 1141
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 240/647 (37%), Positives = 352/647 (54%), Gaps = 64/647 (9%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 375 AYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGN 434
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT + EDGL ++IR K+ + + ++K
Sbjct: 435 VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGKKSKYEIAVETEMKK- 493
Query: 299 AASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKR------------------------ 334
+ L + +N++ K +P K +KR
Sbjct: 494 ESKLERTPQKNVQGKRKISPSKKESESKKSKPTSKRDSLAKTIKKETDVFWRGLDFKEQV 553
Query: 335 --------KGQNIQQSS-------LTWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHWN 376
K +N+ S L W +KY+P + I+G +Q +L WL +W+
Sbjct: 554 AEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWH 613
Query: 377 EKFL-DTGTKRNGK--KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDS 433
+ D + GK ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+
Sbjct: 614 KSSSEDKKHAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDT 673
Query: 434 RGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGI 492
R K+ K SN SIK SN A S S K LIMDEVDGM+ DRGGI
Sbjct: 674 RSKSSLKAIVAESLSNT-SIKGFYSNGAAS-----SVSTKHALIMDEVDGMAGNEDRGGI 727
Query: 493 ADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLE 552
+LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I +M IA EGL+
Sbjct: 728 QELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLK 787
Query: 553 VNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDK 612
+ A+ E+ N DIR ++ L + YD + + KD + PF K
Sbjct: 788 IPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARK 847
Query: 613 LF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAES 670
+F G + + ++ DL D + PL +QENYI+ +P +AG D K L L++RAA+S
Sbjct: 848 VFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADS 907
Query: 671 ISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNS 730
I DGD+ + QIR Q W L + ++ + ++P LM G + Q F F WLGK+S
Sbjct: 908 ICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRG---FMTQ----FPTFPSWLGKHS 960
Query: 731 TMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRV 777
+ GK+ R+++DL H S ++ + T+ +DY S L L +PL +
Sbjct: 961 STGKHDRIVQDLALH--MSLRTYSSKRTVNMDYLSHLRDALVQPLTL 1005
>gi|383410567|gb|AFH28497.1| replication factor C subunit 1 isoform 1 [Macaca mulatta]
Length = 1147
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 240/647 (37%), Positives = 352/647 (54%), Gaps = 64/647 (9%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 381 AYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGN 440
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT + EDGL ++IR K+ + + ++K
Sbjct: 441 VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGKKSKYEIAVETEMKK- 499
Query: 299 AASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKR------------------------ 334
+ L + +N++ K +P K +KR
Sbjct: 500 ESKLERTPQKNVQGKRKISPSKKESESKKSKPTSKRDSLAKTIKKETDVFWRGLDFKEQV 559
Query: 335 --------KGQNIQQSS-------LTWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHWN 376
K +N+ S L W +KY+P + I+G +Q +L WL +W+
Sbjct: 560 AEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWH 619
Query: 377 EKFL-DTGTKRNGK--KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDS 433
+ D + GK ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+
Sbjct: 620 KSSSEDKKHAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDT 679
Query: 434 RGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGI 492
R K+ K SN SIK SN A S S K LIMDEVDGM+ DRGGI
Sbjct: 680 RSKSSLKAIVAESLSNT-SIKGFYSNGAAS-----SVSTKHALIMDEVDGMAGNEDRGGI 733
Query: 493 ADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLE 552
+LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I +M IA EGL+
Sbjct: 734 QELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLK 793
Query: 553 VNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDK 612
+ A+ E+ N DIR ++ L + YD + + KD + PF K
Sbjct: 794 IPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARK 853
Query: 613 LF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAES 670
+F G + + ++ DL D + PL +QENYI+ +P +AG D K L L++RAA+S
Sbjct: 854 VFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADS 913
Query: 671 ISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNS 730
I DGD+ + QIR Q W L + ++ + ++P LM G + Q F F WLGK+S
Sbjct: 914 ICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRG---FMTQ----FPTFPSWLGKHS 966
Query: 731 TMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRV 777
+ GK+ R+++DL H S ++ + T+ +DY S L L +PL +
Sbjct: 967 STGKHDRIVQDLALH--MSLRTYSSKRTVNMDYLSHLRDALVQPLTL 1011
>gi|380815320|gb|AFE79534.1| replication factor C subunit 1 isoform 1 [Macaca mulatta]
Length = 1147
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 240/647 (37%), Positives = 352/647 (54%), Gaps = 64/647 (9%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 381 AYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGN 440
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT + EDGL ++IR K+ + + ++K
Sbjct: 441 VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGKKSKYEIAVETEMKK- 499
Query: 299 AASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKR------------------------ 334
+ L + +N++ K +P K +KR
Sbjct: 500 ESKLERTPQKNVQGKRKISPSKKESESKKSKPTSKRDSLAKTIKKETDVFWRGLDFKEQV 559
Query: 335 --------KGQNIQQSS-------LTWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHWN 376
K +N+ S L W +KY+P + I+G +Q +L WL +W+
Sbjct: 560 AEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWH 619
Query: 377 EKFL-DTGTKRNGK--KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDS 433
+ D + GK ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+
Sbjct: 620 KSSSEDKKHAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDT 679
Query: 434 RGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGI 492
R K+ K SN SIK SN A S S K LIMDEVDGM+ DRGGI
Sbjct: 680 RSKSSLKAIVAESLSNT-SIKGFYSNGAAS-----SVSTKHALIMDEVDGMAGNEDRGGI 733
Query: 493 ADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLE 552
+LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I +M IA EGL+
Sbjct: 734 QELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLK 793
Query: 553 VNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDK 612
+ A+ E+ N DIR ++ L + YD + + KD + PF K
Sbjct: 794 IPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARK 853
Query: 613 LF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAES 670
+F G + + ++ DL D + PL +QENYI+ +P +AG D K L L++RAA+S
Sbjct: 854 VFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADS 913
Query: 671 ISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNS 730
I DGD+ + QIR Q W L + ++ + ++P LM G + Q F F WLGK+S
Sbjct: 914 ICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRG---FMTQ----FPTFPSWLGKHS 966
Query: 731 TMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRV 777
+ GK+ R+++DL H S ++ + T+ +DY S L L +PL +
Sbjct: 967 STGKHDRIVQDLALH--MSLRTYSSKRTVNMDYLSHLRDALVQPLTL 1011
>gi|384948608|gb|AFI37909.1| replication factor C subunit 1 isoform 1 [Macaca mulatta]
Length = 1147
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 240/647 (37%), Positives = 352/647 (54%), Gaps = 64/647 (9%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 381 AYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGN 440
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT + EDGL ++IR K+ + + ++K
Sbjct: 441 VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGKKSKYEIAVETEMKK- 499
Query: 299 AASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKR------------------------ 334
+ L + +N++ K +P K +KR
Sbjct: 500 ESKLERTPQKNVQGKRKISPSKKESESKKSKPTSKRDSLAKTIKKETDVFWRGLDFKEQV 559
Query: 335 --------KGQNIQQSS-------LTWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHWN 376
K +N+ S L W +KY+P + I+G +Q +L WL +W+
Sbjct: 560 AEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWH 619
Query: 377 EKFL-DTGTKRNGK--KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDS 433
+ D + GK ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+
Sbjct: 620 KSSSEDKKHAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDT 679
Query: 434 RGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGI 492
R K+ K SN SIK SN A S S K LIMDEVDGM+ DRGGI
Sbjct: 680 RSKSSLKAIVAESLSNT-SIKGFYSNGAAS-----SVSTKHALIMDEVDGMAGNEDRGGI 733
Query: 493 ADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLE 552
+LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I +M IA EGL+
Sbjct: 734 QELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLK 793
Query: 553 VNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDK 612
+ A+ E+ N DIR ++ L + YD + + KD + PF K
Sbjct: 794 IPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARK 853
Query: 613 LF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAES 670
+F G + + ++ DL D + PL +QENYI+ +P +AG D K L L++RAA+S
Sbjct: 854 VFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADS 913
Query: 671 ISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNS 730
I DGD+ + QIR Q W L + ++ + ++P LM G + Q F F WLGK+S
Sbjct: 914 ICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRG---FMTQ----FPTFPSWLGKHS 966
Query: 731 TMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRV 777
+ GK+ R+++DL H S ++ + T+ +DY S L L +PL +
Sbjct: 967 STGKHDRIVQDLALH--MSLRTYSSKRTVNMDYLSHLRDALVQPLTL 1011
>gi|159477641|ref|XP_001696917.1| DNA replication factor C complex subunit 1 [Chlamydomonas
reinhardtii]
gi|158274829|gb|EDP00609.1| DNA replication factor C complex subunit 1 [Chlamydomonas
reinhardtii]
Length = 1182
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/446 (45%), Positives = 276/446 (61%), Gaps = 18/446 (4%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGT----KRNGKKQNDASAEKAAI 401
W +KY+P+ E+VGN LV L +WL +W + L G K G K D S +KAA+
Sbjct: 542 WVDKYKPRNSAELVGNNTLVDNLKSWLMNWEQVHLRGGAAPTAKGGGSKPKDLS-KKAAL 600
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
LSG PG+GKT+AA ++ + GF+ +E+NASD+R KA K S+GI G +N IKE+V++
Sbjct: 601 LSGPPGIGKTSAAHIMAREAGFEVVEMNASDTRNKA-GKTSEGIAGKQSNIIKEMVTSTT 659
Query: 462 L--------SANMDRSKHPK-TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICND 512
L S P+ +LIMDEVDGMS GDRGG+ DLI +IK SKIPIICICND
Sbjct: 660 LPPGLFGGGCGGGLGSTAPRRQLLIMDEVDGMSGGDRGGVQDLIDTIKRSKIPIICICND 719
Query: 513 RYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMA 572
+Y+QKLKSL N+C +L FRKP +I+KR+ +IA EGL +N+ ++ L GD+R+
Sbjct: 720 KYNQKLKSLRNHCLELEFRKPTVLQISKRMSEIAAKEGLAINQATMDALVTGAGGDLRLI 779
Query: 573 INQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMS 632
+ QLQ + L + +DD+R L S+KD D SPF +L + G+L + +R++L +
Sbjct: 780 LGQLQMVRLRSVAVSFDDVRSGRLGSSKDMDRSPFECSRQLLEPSSGQLSLGDRLELVFA 839
Query: 633 DPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQS 692
D DLVPLL+QENY+N++P+ D RL +A+AA++ S GD+ N IRR+Q W L +
Sbjct: 840 DSDLVPLLLQENYVNHKPAIT-TDAASRLRALAKAADAFSAGDVLNTSIRRHQNWGLMPA 898
Query: 693 SSLASCIIPAALMHGQRET--LEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASR 750
++ C++P A M G RE L GE NF RF W G NST GK RLL +L AS
Sbjct: 899 MAVVGCVLPCAYMRGGREVFGLFPGEMNFPRFSAWFGNNSTSGKQRRLLGELSTSMTASG 958
Query: 751 KSKLGRDTLRLDYFSLLLKQLTEPLR 776
GR +RL+Y S L L PL+
Sbjct: 959 LVAAGRSGVRLEYASALRHLLARPLQ 984
>gi|395856640|ref|XP_003800730.1| PREDICTED: replication factor C subunit 1 [Otolemur garnettii]
Length = 1143
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 237/644 (36%), Positives = 344/644 (53%), Gaps = 64/644 (9%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 380 AYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGN 439
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKT+YL+ D +KS KA LGT + EDGL ++IR K+ + + ++K
Sbjct: 440 VSKKTSYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGKKSKYETAFEAEMKKE 499
Query: 299 AASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKR------------------------ 334
+ L K +N + K +P K KR
Sbjct: 500 KSKLEKTPQKNEQGKRKISPTKRESESKKKKLTPKRDISVKPVPKEMSEFRRGLDFMEQV 559
Query: 335 ----KGQNIQQSS-------LTWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHWNEKFL 380
K +N+ S L W +KY+P + I+G +Q +L WL +W+E
Sbjct: 560 AEGLKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWHES-- 617
Query: 381 DTGTKRNGKK------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434
+ K++ K ++D S KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R
Sbjct: 618 SSEDKKHATKFGKFAGKDDGSGFKAALLSGPPGVGKTTTASLVCQELGYTYVELNASDTR 677
Query: 435 GKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIA 493
K K N SIK S A S S K L+MDEVDGM+ DRGGI
Sbjct: 678 SKNTLKAVVAESLDNT-SIKGFYSGGAAS-----SGSMKHALLMDEVDGMAGSEDRGGIQ 731
Query: 494 DLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEV 553
+LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I +M IA EGL++
Sbjct: 732 ELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKI 791
Query: 554 NEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKL 613
A+ E+ N DIR ++ L + YD + + KD + PF K+
Sbjct: 792 PPPAMNEIILGANQDIRQVLHNLSMWCAGNKALTYDQAKADSHRAKKDIKLGPFDVARKV 851
Query: 614 F--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESI 671
F G + + + ++ DL D + PL +QENY++ +P +AG D K L L++RAA+SI
Sbjct: 852 FAAGEDTAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSI 911
Query: 672 SDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNST 731
DGD+ + QIR Q W L + ++ + ++P LM G F F WLGK+S+
Sbjct: 912 CDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRGYM-------TQFPSFPSWLGKHSS 964
Query: 732 MGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
GK+ R+ +DL H S K+ + T+ LDY S L L +PL
Sbjct: 965 TGKHDRITQDLALH--MSLKTYSSKRTVNLDYLSHLRDALVQPL 1006
>gi|313760612|ref|NP_001186496.1| replication factor C (activator 1) 1, 145kDa [Xenopus (Silurana)
tropicalis]
Length = 1144
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 237/648 (36%), Positives = 348/648 (53%), Gaps = 70/648 (10%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ NF R+ P G KE+P GA +C+ GLTFVI+G L+S+ER+EA+ L++R+GG+VTG+
Sbjct: 370 AYRNFLNREGPKALGSKEIPIGADNCMEGLTFVITGVLESIERDEAKSLVERYGGKVTGN 429
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNY++ D +K KA+ GT L EDGL ++IR + P K + + K
Sbjct: 430 VSKKTNYIIMGRDAGVSKQEKAEAFGTKILDEDGLLNLIR-TLPGKRSKYDIAAAAEAKK 488
Query: 299 AASLPKKSPQNIE--AKSTSAPKAPIERMKTVASPAKRKGQ------------------- 337
A +KSP E K T P+ E+ SPAKR+
Sbjct: 489 AKIKTEKSPDKKEPLTKKTVTPEKK-EQTSKKPSPAKRRFTPEKKESSHKTDLNEKVKTK 547
Query: 338 ----------------NIQQSSLTWTEKYRPKTPNEIVGN---QQLVKQLHTWLAHWNEK 378
++Q SL W +KY+P + +I+G Q +L WL W++
Sbjct: 548 VVKKEPEELEPTTTDGDLQCESLLWVDKYKPTSIKQIIGQQGEQSCANKLMKWLNRWHQN 607
Query: 379 FLDTGTKRNGK-----KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDS 433
K K ++D S+ KAA+LSG PG+GKTT A LVC+ LG+ +E+NASD+
Sbjct: 608 HSSDEKKPAAKLNKFGGKDDGSSFKAALLSGPPGVGKTTTAVLVCEELGYSYVELNASDT 667
Query: 434 RGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRG 490
R K K +++ + N SIK S S + SKH LIMDEVDGM+ DRG
Sbjct: 668 RSKNSMKEVVAESL---NNTSIKGFYSGTCKSVS---SKH---ALIMDEVDGMAGNEDRG 718
Query: 491 GIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEG 550
G+ +LI IK SKIPIIC+CNDR K++SL NYC DLRF++PR ++I +M +A EG
Sbjct: 719 GMQELITLIKQSKIPIICMCNDRNHSKIRSLANYCFDLRFQRPRVEQIKGAMMSVAFKEG 778
Query: 551 LEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAV 610
L++ A+ E+ N DIR ++ L + YD+ + ++ KD + PF V
Sbjct: 779 LKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDEAKSSATNAKKDIKMGPFDVV 838
Query: 611 DKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAA 668
K+F G + + ++ DL D L PL +QENY++ +P++AG + K L L+++AA
Sbjct: 839 RKVFSSGEETAHMTLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNMKKHLLLLSKAA 898
Query: 669 ESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGK 728
+SI DGD+ + IR Q W L + ++ + ++P LM G G+ F F WLGK
Sbjct: 899 DSICDGDLVDRMIRSKQTWSLLPTQAVYASVLPGELMRGY-----MGQ--FPNFPSWLGK 951
Query: 729 NSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLR 776
S+ GK R+ ++L H +++ + L LDY S + L PL
Sbjct: 952 YSSTGKYDRITQELTMH--TCLRTRTNKGALNLDYLSYVRDVLVRPLH 997
>gi|348571613|ref|XP_003471590.1| PREDICTED: replication factor C subunit 1-like [Cavia porcellus]
Length = 1216
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 234/653 (35%), Positives = 350/653 (53%), Gaps = 70/653 (10%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 380 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 439
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT + EDGL D+IR K+ + ++ +EK
Sbjct: 440 VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLDLIRTMPGKKSKYEIAAEAEMEKG 499
Query: 299 AASLPKKSPQNIEAKSTSAPKAPIE------------------RMKTVASPAKRKGQNI- 339
+ L + +N + K +P + +T + R+G +
Sbjct: 500 RSKLERTPQKNNQGKRKISPNKKESESKKSKQTPKRDSSTKTIKKETEVTNVFRRGLDFK 559
Query: 340 -----------------------QQSSLTWTEKYRPKTPNEIVG---NQQLVKQLHTWLA 373
Q SL W +KY+P + I+G +Q +L WL
Sbjct: 560 EQVAKETNGDSRPRELAGDSSESQVDSLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLR 619
Query: 374 HWNEKFLDTGTKRNGK-----KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428
+W++ D K++ K ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+
Sbjct: 620 NWHKSSPDE--KKHAKFGKFTSKDDGSSYKAALLSGPPGVGKTTTASLVCQELGYSYVEL 677
Query: 429 NASDSRGKADAK--ISKGIGGSNANSIKELVSNEALS-ANMDRSKHPKTVLIMDEVDGMS 485
NASD+R K K +++ + N SIK S S K LIMDEVDGM+
Sbjct: 678 NASDTRSKNSLKAVVAESL---NNTSIKGFYSTSPTELGGAVPSVSAKHALIMDEVDGMA 734
Query: 486 AG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544
DRGGI +LI IK +KIPIIC+CNDR K++SLV++C DLRF++PR ++I +M
Sbjct: 735 GTEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHHCFDLRFQRPRVEQIKGAMMS 794
Query: 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDI 604
IA EGL++ A+ E+ N DIR ++ L + YD + + KD +
Sbjct: 795 IAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKL 854
Query: 605 SPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLS 662
PF K+F G + + ++ DL D + PL +QENY++ +P +AG D K L
Sbjct: 855 GPFDVARKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLM 914
Query: 663 LIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRF 722
L++RAA+SI DGD+ + QIR Q W L + ++ + ++P LM G F F
Sbjct: 915 LLSRAADSICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRGYM-------TQFPTF 967
Query: 723 GGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
WLGK+S+ GK+ R+++DL H S ++ + T+ DY S + L +PL
Sbjct: 968 PSWLGKHSSTGKHDRIVQDLALH--MSLRTYASKRTVNTDYLSHIRDALVQPL 1018
>gi|332218978|ref|XP_003258636.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 1
[Nomascus leucogenys]
Length = 1148
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 241/682 (35%), Positives = 364/682 (53%), Gaps = 75/682 (10%)
Query: 147 TESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLG 206
T++P K+ + + S +P + + ++ R+ P G KE+P+GA +CL
Sbjct: 351 TKTPKKT--KSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLE 408
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT
Sbjct: 409 GLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTK 468
Query: 267 FLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMK 326
+ EDGL ++IR K+ + + ++K + L + +N++ K +P K
Sbjct: 469 IIDEDGLLNLIRTMPGKKSKYEIAVETEMKK-ESKLERTPQKNVQGKRKISPSKKESESK 527
Query: 327 TVASPAKR--------------------------------KGQNIQQSS-------LTWT 347
+KR K +N+ S L W
Sbjct: 528 KSKPTSKRDSLAKTVKKEPDVFWRSLDFKEQVAEEISGDNKARNLADDSSENKVENLLWV 587
Query: 348 EKYRPKTPNEIVG---NQQLVKQLHTWLAHWNEKFLDTGTKRNGKK------QNDASAEK 398
+KY+P + I+G +Q +L WL +W++ + K++ K ++D + K
Sbjct: 588 DKYKPTSLKTIIGQQGDQSCANKLLRWLRNWHKS--SSEDKKHAAKFGKFSGKDDGCSFK 645
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKEL 456
AA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K+ K +++ + N SIK
Sbjct: 646 AALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESL---NNTSIKGF 702
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYS 515
SN A S S K LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR
Sbjct: 703 YSNGAAS-----SVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNH 757
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
K++SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++
Sbjct: 758 PKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHN 817
Query: 576 LQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSD 633
L + YD + + KD + PF K+F G + + ++ DL D
Sbjct: 818 LSMWCAQSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHD 877
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
+ PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L +
Sbjct: 878 YSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPTQ 937
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSK 753
++ + ++P LM G F F WLGK+S+ GK+ R+++DL H S ++
Sbjct: 938 AIYASVLPGELMRGYM-------TQFPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTY 988
Query: 754 LGRDTLRLDYFSLLLKQLTEPL 775
+ T+ +DY S L L +PL
Sbjct: 989 SSKRTVNVDYLSHLRDALVQPL 1010
>gi|348529444|ref|XP_003452223.1| PREDICTED: replication factor C subunit 1-like [Oreochromis
niloticus]
Length = 1174
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 275/812 (33%), Positives = 396/812 (48%), Gaps = 137/812 (16%)
Query: 69 EELPAKRKAEK--DDGKSVRSSPLKKFHKA--------DDDDDDFVPPSVKKNSVGATPS 118
+E P +KA K D+ + + +SP KK A +D V PS KK + S
Sbjct: 258 DEEPKAKKARKGSDEKQILTTSPKKKATDAAAPGSSSKTSVSEDVVSPSPKKTTAPVKAS 317
Query: 119 KKLKSGSGRAVAQKSVDIDDDEEEDVK-KTESPLKSSGRG-------------------- 157
KL A+ +K DDD+ E VK KT + +K S +
Sbjct: 318 SKL------AMMKKK---DDDKNEGVKSKTPTKMKISPKKEPHASSISEKTFTPKTGTTP 368
Query: 158 -------RGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTF 210
+ S +P + + NF R P G KE+P+GA +CL G F
Sbjct: 369 TALKTSPKKPESTSTSPDDQEKKKANSSAYRNFLNRDGPRALGSKEIPKGAENCLEGCVF 428
Query: 211 VISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTE 270
V++G L+S+ERE+A+ LI+R+GG+VTG+VSKKT YL+ D +K KA+ GT L E
Sbjct: 429 VLTGVLESMEREDAKSLIERYGGKVTGNVSKKTTYLIQGRDSGASKLEKAESFGTQILDE 488
Query: 271 DGLFDMIRASKPMKA-----LAQAESKKSVEKVAASLPKKSPQNIEAKSTS-----APKA 320
DGL ++IR +KP K A+AESK + K S KS + S S +P
Sbjct: 489 DGLLELIR-TKPGKKSKYEIAAEAESKTTKTKTPPSQASKSTPKAQKISPSKGNSRSPHT 547
Query: 321 PIERMKTVAS------------PAKRKGQNIQQS-------------------------S 343
P A P + GQ ++ S
Sbjct: 548 PSPSKTGQAQGRGTKTRDGRTPPGRGSGQTARRELGLSSCASSSSVPEQSSPSPTEECGS 607
Query: 344 LTWTEKYRPKTPNEIVGNQ---QLVKQLHTWLAHWNEKFLDTGTK----RNGK--KQNDA 394
L W +KYRP++ ++G Q +L WL +W + K R GK ++D
Sbjct: 608 LLWVDKYRPRSLKAVIGQQGGQSCANKLLRWLQNWYKNHGSGSGKPAAARFGKFGGKDDG 667
Query: 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIK 454
S KAA+LSG PG+GKTT A LVC+ LGF +E+NAS +R K NS+K
Sbjct: 668 SGFKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSK--------------NSLK 713
Query: 455 ELV-------SNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPI 506
E+V S E ++ K VLIMDEVDGM+ DRGGI ++I IK SKIPI
Sbjct: 714 EVVAESLNNTSIENFYKGTSQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKNSKIPI 773
Query: 507 ICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN 566
IC+CNDR QK++SL NYC DLRF++PR ++I +M IA EG+ + AL E+ N
Sbjct: 774 ICMCNDRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSIAFKEGIRIPPPALNEIILASN 833
Query: 567 GDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMD 624
D+R I+ L S V+ YD + S+ KD + PF K+F G ++ +
Sbjct: 834 QDVRQVIHNLSMWSAKDKVMTYDQCKSDAASARKDMKLGPFDVCRKVFASGEETARMSLI 893
Query: 625 ERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRN 684
++ DL D L PL +QENY++ RP++AG + L L+++ A+SI DGD+ + +IR
Sbjct: 894 DKSDLFFHDYSLAPLFVQENYLHVRPAAAGGNLKSHLVLLSKTADSICDGDLVDRRIRSR 953
Query: 685 QQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHF 744
Q W L + ++ + ++P LM G F F WLGKNS+ K+ R++++L
Sbjct: 954 QNWSLLPTQAIYASVLPGELMRGYM-------NQFPIFPSWLGKNSSTNKHSRIMQELSS 1006
Query: 745 HHLASRKSKLGRDTLRLDYFSLLLKQLTEPLR 776
H S K+ + + LDY L + + PL+
Sbjct: 1007 H--MSLKTLSSKQAVNLDYLHYLRQAILNPLQ 1036
>gi|351713292|gb|EHB16211.1| Replication factor C subunit 1 [Heterocephalus glaber]
Length = 1454
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 233/653 (35%), Positives = 354/653 (54%), Gaps = 72/653 (11%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 680 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 739
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT + EDGL ++IR K+ + + +EK
Sbjct: 740 VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGKKSKYEIAVEAEMEKG 799
Query: 299 AASLPKKSPQNIEAKSTSAPKAPIE------------------RMKTVASPAKRKGQNIQ 340
+ L + +N + K +P + +T + R+G + +
Sbjct: 800 KSKLERTPQKNNQGKRKISPNKKESESKKNKQTPKRDSSTKTIKKETEVTNVFRRGLDFK 859
Query: 341 QS------------------------SLTWTEKYRPKTPNEIVG---NQQLVKQLHTWLA 373
+ SL W +KY+P + I+G +Q +L WL
Sbjct: 860 EQVAEETNGDSRPRELADESSESKVDSLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLR 919
Query: 374 HWNEKFLDTGTKRNGKK------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
+W++ D K++ K ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E
Sbjct: 920 NWHKSSPDE--KKHAAKFGKFAGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVE 977
Query: 428 VNASDSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS 485
+NASD+R K K +++ + N SIK S+ A A + S K LIMDEVDGM+
Sbjct: 978 LNASDTRSKNSLKAIVAESL---NNTSIKGFYSSGAGGA--EASVSAKHALIMDEVDGMA 1032
Query: 486 AG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544
DRGGI +LI IK +KIPIIC+CNDR +++SLV+YC DLRF +PR ++I +M
Sbjct: 1033 GTEDRGGIQELIGLIKHTKIPIICMCNDRNHPRIRSLVHYCFDLRFPRPRVEQIKGAMMS 1092
Query: 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDI 604
IA EGL++ A+ E+ N DIR ++ L + YD + + KD +
Sbjct: 1093 IAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSLWCARSKALTYDQAKADSHRAKKDIKL 1152
Query: 605 SPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLS 662
PF K+F G + + ++ DL D + PL +QENY++ +P +AG D K L
Sbjct: 1153 GPFDVARKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLM 1212
Query: 663 LIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRF 722
L++RAA+SI DGD+ + QIR Q W L + ++ + ++P LM G F F
Sbjct: 1213 LLSRAADSICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRGYM-------TQFPTF 1265
Query: 723 GGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
WLGK+S+ G++ R+++DL H S ++ + T+ +DY S + L +PL
Sbjct: 1266 PSWLGKHSSTGRHDRIVQDLALH--MSLRTYSSKRTVNMDYLSHIRDALVQPL 1316
>gi|338723476|ref|XP_001495351.3| PREDICTED: replication factor C subunit 1 [Equus caballus]
Length = 1177
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 240/689 (34%), Positives = 370/689 (53%), Gaps = 88/689 (12%)
Query: 147 TESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLG 206
T++P K+ + + S +P R + ++ R+ P G KE+P+GA +CL
Sbjct: 379 TKTPKKT--KSSPAKKESISPEDSEKRRTNYQAYRSYLNREGPKALGSKEIPKGAENCLE 436
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT
Sbjct: 437 GLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTK 496
Query: 267 FLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPI---- 322
+ EDGL ++IR K+ + + ++K + L + +N + K +P
Sbjct: 497 IIDEDGLLNLIRTMPGKKSKYEIALEAEMKKDKSKLERTPQKNGQGKRKISPTKKESESK 556
Query: 323 ------ERMKTVASPAK-----RKGQNIQQS------------------------SLTWT 347
+R +V S K R+G + ++ +L W
Sbjct: 557 KSKLTPKRDSSVKSIKKETSVFRRGLDFKEQVAEETNGDSQTRNLAGDSSENKVENLLWV 616
Query: 348 EKYRPKTPNEIVG---NQQLVKQLHTWLAHWNEKFLDTGTKRNGKK------QNDASAEK 398
+KY+P + I+G +Q +L WL +W++ + K++ K ++D S+ K
Sbjct: 617 DKYKPLSLKTIIGQQGDQSCANKLLRWLQNWHKS--PSEEKKHAAKFGKFAGKDDGSSFK 674
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
AA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K NS+KE+V+
Sbjct: 675 AALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSK--------------NSLKEIVA 720
Query: 459 NEAL---------SANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIIC 508
E+L S+ + S K L+MDEVDGM+ DRGGI +LI IK +KIPIIC
Sbjct: 721 -ESLNNTSIKGFYSSGLAHSGSMKHALLMDEVDGMAGNEDRGGIQELIGLIKHTKIPIIC 779
Query: 509 ICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGD 568
+CNDR K++SL++YC DLRF++PR ++I +M IA EGL++ A+ E+ N D
Sbjct: 780 MCNDRNHPKIRSLIHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQD 839
Query: 569 IRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDER 626
IR ++ L + YD + + KD + PF K+F G + + ++
Sbjct: 840 IRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKLGPFDVARKVFAAGEETAHMSLMDK 899
Query: 627 IDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQ 686
DL D + PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR Q
Sbjct: 900 SDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDRQIRSKQN 959
Query: 687 WQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHH 746
W L + ++ + ++P LM G L Q F F WLGK+S+ GK+ R+++DL H
Sbjct: 960 WSLLPTQAIYASVLPGELMRG---YLTQ----FPTFPSWLGKHSSTGKHDRIVQDLALH- 1011
Query: 747 LASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
S ++ + T+ ++Y S + L +PL
Sbjct: 1012 -MSLRTYSSKRTVNMEYLSHIRDALVQPL 1039
>gi|431897157|gb|ELK06419.1| Replication factor C subunit 1 [Pteropus alecto]
Length = 1252
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 233/649 (35%), Positives = 348/649 (53%), Gaps = 79/649 (12%)
Query: 164 SGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREE 223
S +P R + +F R+ P G KE+P+GA +CL GL FVI+G L+S+ER+E
Sbjct: 448 SVSPEDSEKRRTNYQAYRSFLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDE 507
Query: 224 AEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM 283
A+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT + EDGL D+IR
Sbjct: 508 AKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLDLIRTMPGK 567
Query: 284 KALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAP-KAPIERMKTVASPAK--------- 333
K+ + + + K + L + +N + K +P K E ++ +P +
Sbjct: 568 KSKYEIAVEAEMNKGKSRLQRTPQKNEQGKRKISPTKKESESKRSRLTPKRGSSLNSVKK 627
Query: 334 -----RKGQNIQQS------------------------SLTWTEKYRPKTPNEIVG---N 361
R+G + ++ +L W +KY+P + I+G +
Sbjct: 628 ETSVFRRGLDFKEQEAEDTGGNSWARNWADDSSENKVENLLWVDKYKPTSLKTIIGQQGD 687
Query: 362 QQLVKQLHTWLAHWNEK-FLDTGTKRNGK--KQNDASAEKAAILSGSPGMGKTTAAKLVC 418
Q +L WL +W+++ D + GK ++D S+ KAA+LSG PG+GKTT A LVC
Sbjct: 688 QSCANKLLRWLQNWHKRPSEDKKHAKFGKFAGKDDGSSFKAALLSGPPGVGKTTTASLVC 747
Query: 419 QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL---------SANMDRS 469
Q LG+ +E+NASD+R K NS+KE+V+ E+L S+ S
Sbjct: 748 QELGYSYVELNASDTRSK--------------NSLKEIVA-ESLNNTSIRGFYSSGAAHS 792
Query: 470 KHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDL 528
K LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR K++SLV+YC DL
Sbjct: 793 VSTKHALIMDEVDGMAGTEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDL 852
Query: 529 RFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKY 588
RF++PR ++I +M IA EGL++ A+ E+ N DIR ++ L + Y
Sbjct: 853 RFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTY 912
Query: 589 DDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYI 646
D + + KD + PF K+F G + + ++ DL D + PL +QENY+
Sbjct: 913 DQAKADSHRAKKDIKLGPFDVARKVFATGEETAHMSLVDKSDLFFHDYSIAPLFVQENYL 972
Query: 647 NYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMH 706
+ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L + ++ + ++P LM
Sbjct: 973 HVKPVAAGGDMKKHLMLLSRAADSICDGDLVDRQIRSRQNWSLLPTQAIYASVLPGELMR 1032
Query: 707 GQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG 755
G F F WLGK+S+ GK+ R+++DL H S+ + G
Sbjct: 1033 GYM-------TQFPSFPSWLGKHSSTGKHDRIIQDLALHMSLSKDVQTG 1074
>gi|440804114|gb|ELR24992.1| replication factor rfc1 c terminal domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 977
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 237/606 (39%), Positives = 334/606 (55%), Gaps = 47/606 (7%)
Query: 186 RKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNY 245
R PPH G K++PEG P CL G F+ +G LDSLER++ LI+ +GG V SV+KK +
Sbjct: 249 RAGPPHLGMKDLPEGKPWCLWGKVFMCTGVLDSLERDDCFTLIEHYGGTVAKSVTKKLTH 308
Query: 246 LLCDEDIAGAKSTKAKEL----GTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAAS 301
+ D AGAK + E G L EDGLFD+IR S + A +K + ++
Sbjct: 309 AVVGTD-AGAKKLEQIEARKAQGLVALDEDGLFDLIRNSPEHRPSAAEIAKFNKQRKTEG 367
Query: 302 LPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGN 361
P K +A T+AP P A ++KG + W EKY+PK+ E++ N
Sbjct: 368 APAKP----KALQTAAPLLP-SPTPASAEEEQKKGPEL------WVEKYKPKSTKEVIAN 416
Query: 362 QQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421
VK+L WL W + KR A+ + AA+LSG PG+GKTT A LV
Sbjct: 417 PAAVKKLQDWLQGWQRSEVQRA-KRGEAPARGATQKNAALLSGPPGIGKTTTAHLVAAEC 475
Query: 422 GFQAIEVNASDSRGKADAKISKGIGGSNAN-SIKELVSNEALSANMDRSKHPKTVLIMDE 480
G+ A+E NASD+R K I + + S N + E + + KTVLIMDE
Sbjct: 476 GYYALEFNASDTRSKK--MIKEHLAQSTENRGLAEFFTGRG-------GEDGKTVLIMDE 526
Query: 481 VDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK 540
VDGMS+GDRGG+A++IA IK + IPIIC+CNDR S K++SL NYC D++ +KP Q+I
Sbjct: 527 VDGMSSGDRGGMAEIIALIKKTHIPIICLCNDRASAKVRSLANYCLDIQLQKPTTQQILG 586
Query: 541 RLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS---LSVIKYDDIRQRLLS 597
R+ QI E + ++ L + D NGD+R +N LQ +++ L + ++++RL +
Sbjct: 587 RVTQILQRENIAIDNATLTRIVDASNGDVRQLLNMLQMLTVKSKDLGTLSAPELQERLRT 646
Query: 598 SAKDEDISPFTAVDKLF-GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSA--- 653
S K+ ++ P AV+KLF KL +D ++DL DP VPL IQENY++ RP A
Sbjct: 647 SLKEVELGPLDAVNKLFNATEYQKLSLDAKLDLYFIDPSFVPLFIQENYLHCRPRRARNV 706
Query: 654 GRD-EVKRL---SLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQR 709
R+ EV+RL LI++AA+S S+ D+F+V I R+Q W L+ + S I PA M G
Sbjct: 707 SRNPEVERLVEMDLISQAADSFSEADLFDVAIHRDQDWSLAPIHGVFSAIRPAEFMTGNL 766
Query: 710 ETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLK 769
G +F + WLGK S+ K RLL +L A+ + LRLDY L++
Sbjct: 767 ----AGRIDFPK---WLGKFSSRKKRFRLLTELAVRMSATTSG--DKALLRLDYLPHLVR 817
Query: 770 QLTEPL 775
LT PL
Sbjct: 818 PLTAPL 823
>gi|410957802|ref|XP_003985513.1| PREDICTED: replication factor C subunit 1 [Felis catus]
Length = 1474
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 232/633 (36%), Positives = 344/633 (54%), Gaps = 51/633 (8%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 719 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 778
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMK----ALAQAESKKS 294
VSKKTNYL+ D +KS KA LGT + EDGL MK L + K
Sbjct: 779 VSKKTNYLVMGRDSGQSKSDKAAALGTNIIDEDGLLXXXXXXXXMKKEKCKLERTPQKND 838
Query: 295 VEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKR----------------KGQN 338
K S KK ++ +++ T + ++ +K S R + +N
Sbjct: 839 QGKRKISPTKKESESKKSRLTPKRGSSMKSIKKETSAIWRSLDFEERVAEETNVDSRARN 898
Query: 339 I-------QQSSLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHWNEK-FLDTGTKRN 387
+ + +L W +KY+P + I+ G+Q +L WL +W++ D +
Sbjct: 899 LADDCSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLQNWHKSPSEDKKRAKF 958
Query: 388 GK--KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI 445
GK ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K K
Sbjct: 959 GKFAGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKEIIAE 1018
Query: 446 GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKI 504
+N + S A S +M K +IMDEVDGM+ DRGGI +LI IK +KI
Sbjct: 1019 SLNNTSITGFYSSGGAHSVSM------KHAVIMDEVDGMAGNEDRGGIQELIGLIKHTKI 1072
Query: 505 PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR 564
PIIC+CNDR K++SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+
Sbjct: 1073 PIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILG 1132
Query: 565 VNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLR 622
N DIR ++ L + YD + + KD + PF K+F G +
Sbjct: 1133 ANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKLGPFDVARKVFAAGEETAHMS 1192
Query: 623 MDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIR 682
+ ++ DL D + PL +QENY++ +P +AG D K L L++RAA+SI DGD+ + QIR
Sbjct: 1193 LMDKSDLFFHDYSIAPLFVQENYVHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDRQIR 1252
Query: 683 RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDL 742
Q W L + ++ + ++P LM G F F WLGK+S+ GK+ R+++DL
Sbjct: 1253 SKQNWSLLPTQAIYASVLPGELMRGYMT-------QFPTFPSWLGKHSSAGKHDRIVQDL 1305
Query: 743 HFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
H+ R R T+ +DY S + L +PL
Sbjct: 1306 -AQHMGLRTYSSKR-TVNMDYLSHIRDALVQPL 1336
>gi|260827655|ref|XP_002608780.1| hypothetical protein BRAFLDRAFT_183645 [Branchiostoma floridae]
gi|229294132|gb|EEN64790.1| hypothetical protein BRAFLDRAFT_183645 [Branchiostoma floridae]
Length = 756
Score = 370 bits (951), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 243/687 (35%), Positives = 364/687 (52%), Gaps = 103/687 (14%)
Query: 144 VKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPD 203
+KT SP KS + + A PA RG + + R+ P G KE+P+G +
Sbjct: 12 TEKTPSPKKSPAKD-SNQDAEKKPA--------RGAYRAYLTREGPRALGTKEIPQGQEN 62
Query: 204 CLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKEL 263
CLGGLTFV++G L+S+ER EA++L++R+GG+VT SVSK+T+Y++ D +K K +L
Sbjct: 63 CLGGLTFVLTGILESMERHEAKELVERYGGKVTSSVSKRTSYVVVGRDAGESKLDKVSQL 122
Query: 264 GTPFLTEDGLFDMIRA--SKPMKALAQAESKKSVEK------------------------ 297
G L EDGL ++++ KP +A SK
Sbjct: 123 GLKTLDEDGLLELVKTLPGKPYDLPPEATSKSKKSPPKKSPNKPGKNSPKPRKEFVISMK 182
Query: 298 ---VAASLPKKSPQNIEAKSTS--APKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRP 352
+ AS P + + A S+ +PK P + T SP + SL W +KY+P
Sbjct: 183 CLIIFASEPAATTRKPVASSSRVVSPKKPAASLTTTDSP---------EPSLLWVDKYKP 233
Query: 353 KTPNEIVGNQ---QLVKQLHTWLAHWNEKFLDTG-TKRNGKKQNDASAEKAAILSGSPGM 408
+T I+G Q VK+L WL W + D+ T R K+ D S +AA+LSG PG+
Sbjct: 234 QTTKAIIGQQGDRSNVKKLLKWLQTWPKHHSDSPFTGRQVKE--DGSGFRAALLSGPPGV 291
Query: 409 GKTTAAKLVCQMLGFQAIEVNASDSRGK-------ADAKISKGI------GGSNANSIKE 455
GKTTAA L CQ LGF IE+NASD+R K ++A ++ I GG +A ++++
Sbjct: 292 GKTTAATLCCQELGFTYIELNASDTRSKRSLQEEVSEALTTRSIVGFQKQGGKDAGTMRQ 351
Query: 456 LVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRY 514
V IMDEVDGM+ DRGGIA+LI IK +K+PI+C+CNDR
Sbjct: 352 AV-------------------IMDEVDGMAGNEDRGGIAELINLIKHTKVPIVCMCNDRS 392
Query: 515 SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAIN 574
QK++SLVNYC DLRF++PR ++I +M +A EGL++ AL ++ + N D+R I+
Sbjct: 393 HQKMRSLVNYCFDLRFQRPRVEQIRAAMMSMAFKEGLKIPPPALNQIIEATNHDVRQVIH 452
Query: 575 QLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMS 632
QL S+ + +D ++ + KD PF K+F G + +L + ++ DL +
Sbjct: 453 QLYMWSVQDKALTFDQAKEASKQAQKDIKQGPFEVTRKVFSSGKDTARLTIMDKSDLFFN 512
Query: 633 DPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQS 692
D ++PL +QENY N P++A + K+LSL+++ A+SI DGD+ + IR Q W L +
Sbjct: 513 DYSMMPLFVQENYPNVLPNAARNNMKKQLSLLSQTADSICDGDLVDKLIRSRQSWGLLPT 572
Query: 693 SSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRK 751
++ + ++P M G + F GWLG+ S + RLL++LH H HL +
Sbjct: 573 QAIYASVLPGEYMRGHLSGMIS-------FPGWLGQFSKQNRLRRLLQELHMHMHLRTSC 625
Query: 752 SKLG-----RDTLRLDYFSLLLKQLTE 773
+K D LR +LL+ Q TE
Sbjct: 626 TKKSLQEDYLDPLRRRILNLLVTQETE 652
>gi|312371248|gb|EFR19483.1| hypothetical protein AND_22348 [Anopheles darlingi]
Length = 1111
Score = 369 bits (948), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 243/673 (36%), Positives = 366/673 (54%), Gaps = 108/673 (16%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ F R+ P + G K +PEG P+CL GL FVI+G L+S+ER+E +IK GG+V G+V
Sbjct: 256 YQKFKNRQGPANPGSKAIPEGKPNCLEGLQFVITGVLESMERDECAQVIKDLGGKVVGAV 315
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR-----ASKPMKALAQAES--- 291
SKK +++ +D K ++A++LG P L+ED LFD+IR A + + + ES
Sbjct: 316 SKKVTHMVVGDDCGPKKLSQAEDLGIPTLSEDALFDLIREKSGQAKQGAGSAIKKESPGS 375
Query: 292 -------------KKSVEKV-------------------AASLPKK--------SPQNIE 311
KK V+KV AAS P K PQ ++
Sbjct: 376 VASGSKRKESPNEKKDVKKVKAEPQSPVTARKVEVKKEPAASSPVKVKSEKSPAKPQPVK 435
Query: 312 AKSTSAPKAPIERMKTVASPAKRKGQNIQQ-----SSLTWTEKYRPKTPNEIVGNQQL-- 364
+ +PK + + A+ KR+ + Q+ ++ W +KY+P T +I+G
Sbjct: 436 VEKHISPKKQTAELASTAT-VKREMTDYQKDIKSTDNMAWVDKYKPTTTKQIIGQMGAAS 494
Query: 365 -VKQLHTWLAHWNEKFLDTGTKRNGK-----KQNDASAEKAAILSGSPGMGKTTAAKLVC 418
V++L WL+ W++ + GTK++ K K + +A KAA+LSG PG+GKTT A LVC
Sbjct: 495 NVQKLTVWLSSWHKN--NDGTKKHAKPSPWAKNDSGAAFKAALLSGPPGVGKTTTATLVC 552
Query: 419 QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS------ANMDRSKHP 472
Q LGF +E NASD+R K K + EL+++++L+ +N +KH
Sbjct: 553 QELGFDTVEFNASDTRSKRLLK----------EEVSELLNSKSLAGYFGGKSNKVSAKH- 601
Query: 473 KTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFR 531
VL+MDEVDGM+ DRGG+ +LIA IK S IPIIC+CNDR K++SLVN+C DLRF
Sbjct: 602 --VLLMDEVDGMAGNEDRGGMQELIALIKESHIPIICMCNDRNHPKIRSLVNHCFDLRFN 659
Query: 532 KPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL------QYMSLSLSV 585
+PR ++I +M I EGL++ LEE+ GD+R +N L + M+ S+SV
Sbjct: 660 RPRVEQIKGAMMSICFKEGLKLAPGVLEEIITGTGGDVRQTLNHLALYSAGKSMAASMSV 719
Query: 586 IKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQEN 644
D +++ SS KD I P+ + K+F K + ++++ DL D ++ PL +QEN
Sbjct: 720 ---DAAKKQADSSKKDIKIGPWDVIRKVFSAEDHKSMTLNDKADLFFHDYNIAPLFVQEN 776
Query: 645 YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAAL 704
Y+ +P A R E+ L IA A+S+S GD+ + +IR N W L ++ S ++P
Sbjct: 777 YLKVQP-KAPRSEL--LERIALTADSLSRGDMVDRRIRSNMAWSLLPVQAMFSSVMPGEF 833
Query: 705 MHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDY 763
M G G+ N F GWLGKNS K RL +++H H +A+ S+L +RLDY
Sbjct: 834 MEGHF----TGQIN---FPGWLGKNSKAQKRKRLAQEIHDHTRVATSGSRLA---IRLDY 883
Query: 764 FSLLLKQLTEPLR 776
LL+ + +PL+
Sbjct: 884 APHLLRSIVQPLQ 896
>gi|449665358|ref|XP_002169845.2| PREDICTED: replication factor C subunit 1-like [Hydra
magnipapillata]
gi|205364119|gb|ACI04517.1| replication factor C large subunit [Hydra magnipapillata]
Length = 1116
Score = 365 bits (938), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 240/648 (37%), Positives = 341/648 (52%), Gaps = 70/648 (10%)
Query: 177 RGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVT 236
+ + + R P G KE+P+G+ +CL GL+FVI+G L++ +R+E D IKR+GG+VT
Sbjct: 332 KKSYWAYKHRDGPSALGSKELPKGSDNCLAGLSFVITGVLEAFDRDEIADSIKRYGGKVT 391
Query: 237 GSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMI--RASKP--MKALAQAESK 292
SVS KT+Y++ D K KA + T + EDG D+I + KP + E+
Sbjct: 392 TSVSGKTSYIIVGRDPGETKIEKALKHKTKQIDEDGFIDLICSHSKKPNELNNNDHNENL 451
Query: 293 KSVEKVAASLPKKSPQNIEAKSTSAPKAPIE--RMKTVASPAKRKGQNIQQ--------- 341
KS EK + K++P T K +E ++ + S + QN+Q
Sbjct: 452 KSREKSFSDSSKRTPILDVNSPTLKKKGVLETGKLDVLTSNSTSMVQNVQSPKDKPNLSQ 511
Query: 342 --------------------------SSLTWTEKYRPKTPNEIVGNQ---QLVKQLHTWL 372
SSL W +KY+P T IVG Q +L+ WL
Sbjct: 512 ISPAISNTPQTQSPLYNSQDCTNGKTSSLLWVDKYKPATMRNIVGQQGDKSNANKLYKWL 571
Query: 373 AHWNEKFLDTGTKRN---GKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429
WNE K+N GK+ D S KAA+LSG PG+GKTT A LVCQ LGF IE+N
Sbjct: 572 LKWNENNSSGEKKKNFYSGKE--DGSIFKAALLSGPPGVGKTTTANLVCQELGFSFIEMN 629
Query: 430 ASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-D 488
ASD+RGK K + I IK+ +SN+ ++ M + K LIMDEVDGM+ D
Sbjct: 630 ASDTRGK---KALETI-------IKDALSNKTVAGVMQGNTGDKHALIMDEVDGMAGTED 679
Query: 489 RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
RGG+ +LI IK +KIPIIC+CNDR K++SL NYC DLRF KPR ++I M +A
Sbjct: 680 RGGMQELIQLIKKTKIPIICMCNDRNHPKVRSLSNYCFDLRFYKPRVEQIKGFAMSVAAR 739
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFT 608
EG ++ A+E++ N DIR ++ LQ + + SV+ YD+ + ++K+ + PF
Sbjct: 740 EGFKIQPQAMEQIVVGANQDIRQVLHNLQMWNSTKSVLNYDEAKSNANDASKNIKLGPFD 799
Query: 609 AVDKLFGFNG-GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARA 667
V +L+ N K+ +E DL D +PL +QENY+ P+ A + L LI+
Sbjct: 800 IVKQLYTANDCSKMSYNEITDLFFMDYSFIPLFMQENYLYTNPAKARGNPRVTLDLISET 859
Query: 668 AESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLG 727
A+S SD D+ +V IR Q W L L S +IP M G G+R F WLG
Sbjct: 860 ADSFSDSDLVDVLIRGEQSWSLLPLQGLFSTVIPCVKMAGYI-----GQR--IEFPRWLG 912
Query: 728 KNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
KNS+M KN R+L++L H S + + + DY +L K+LT+PL
Sbjct: 913 KNSSMNKNHRILQELKMH--MSLSAHCLKSEVNTDYIPVLKKRLTDPL 958
>gi|359066411|ref|XP_003586244.1| PREDICTED: replication factor C subunit 1-like [Bos taurus]
Length = 1127
Score = 364 bits (935), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 241/678 (35%), Positives = 366/678 (53%), Gaps = 78/678 (11%)
Query: 143 DVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAP 202
++K+T +P K + + S +P R + ++ R+ P G KE+P+GA
Sbjct: 345 ELKETRTPKKM--KSSPAKKESVSPDEAEKRRTNYQAYRSYLNREGPKALGSKEIPKGAE 402
Query: 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKE 262
+CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS K
Sbjct: 403 NCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDK--- 459
Query: 263 LGTP-FLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAP 321
+G+ F L +++ K L + K K +S KK ++ + K T ++
Sbjct: 460 VGSAVFSAGSSLLALMKKEK--SKLERTPQKNDQGKRKSSPTKKESESKKCKLTPKRESS 517
Query: 322 IERMKTVASPAKR----KGQNIQQS-------------------SLTWTEKYRPKTPNEI 358
I+ +K AS ++R K Q +++ SL W +KY+P + I
Sbjct: 518 IKSLKKEASVSQRGLDFKEQAAEETNGDSRARNLADDSRESKVESLLWVDKYKPTSLKTI 577
Query: 359 VG---NQQLVKQLHTWLAHWNEKFLDTGTKRNGKK------QNDASAEKAAILSGSPGMG 409
+G +Q +L WL +W++ + K++ K ++D S+ KAA+LSG PG+G
Sbjct: 578 IGQQGDQSCANKLLRWLQNWHKS--PSEDKKHAAKFGKFAGKDDGSSFKAALLSGPPGVG 635
Query: 410 KTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL------- 462
KTT A LVCQ LG+ +E+NASD+R K NS+KE+V+ E+L
Sbjct: 636 KTTTASLVCQELGYSYVELNASDTRSK--------------NSLKEIVA-ESLNNTSIKG 680
Query: 463 --SANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLK 519
S+ S + LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR K++
Sbjct: 681 FYSSGTVHSVGTRHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIR 740
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++ L
Sbjct: 741 SLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLNMW 800
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLV 637
+ YD + + KD + PF K+F G + + ++ DL D +
Sbjct: 801 CARNKALTYDQAKADSHRAKKDIKLGPFDVARKVFVSGEETAHMSLMDKSDLFFHDYSIA 860
Query: 638 PLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLAS 697
PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L + ++ +
Sbjct: 861 PLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDRQIRNKQNWSLLPTQAIYA 920
Query: 698 CIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRD 757
++P LM G F F WLGK S+MGK+ R ++DL H S ++ +
Sbjct: 921 SVLPGELMRGYM-------TQFPTFPSWLGKYSSMGKHDRTVQDLALH--MSLRTYSSKR 971
Query: 758 TLRLDYFSLLLKQLTEPL 775
T+ +DY S + L +PL
Sbjct: 972 TVNMDYLSHIRDALVQPL 989
>gi|347965669|ref|XP_321857.5| AGAP001290-PA [Anopheles gambiae str. PEST]
gi|333470404|gb|EAA01207.6| AGAP001290-PA [Anopheles gambiae str. PEST]
Length = 1053
Score = 361 bits (927), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 235/681 (34%), Positives = 357/681 (52%), Gaps = 115/681 (16%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ F R+ P + G KE+PEG P+CL GL FVI+G L+S+ER+E +IK GG+V G+V
Sbjct: 253 YQKFKNRQGPANPGSKEIPEGKPNCLQGLQFVITGVLESMERDECAQVIKDLGGKVVGAV 312
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVA 299
SKK +++ +D K +A+ELG L+ED L D+IR K L ++ S K E
Sbjct: 313 SKKCTHMVVGDDAGPKKIAQAEELGIVTLSEDELLDLIRVKSGQKPLKKSSSVKEAESAG 372
Query: 300 ASL-----------------------PKKSPQNIEAKST---SAPKAPIER--------- 324
S P+KSP+ ++ +S+ S KA ++R
Sbjct: 373 GSSTSSKRKESPKEEKEIKKMKTDPSPRKSPKELKTESSKGRSPGKATVDRKSEHSKEAV 432
Query: 325 -MKTVASPAKRKGQNIQQS-------------------------SLTWTEKYRPKTPNEI 358
+K SP+K+ + S ++ W EKY+P + +I
Sbjct: 433 KVKVEKSPSKQPSDGAKTSPRKLEPSTTVKRELSDYQKDIKSVDNMAWVEKYKPSSTKQI 492
Query: 359 VGNQQL---VKQLHTWLAHWNEKFLDTGTKRNGK-----KQNDASAEKAAILSGSPGMGK 410
+G V++L WL+ W + + GTK++ K K + +A KAA+LSG PG+GK
Sbjct: 493 IGQMGANSNVQRLTVWLSSWYKN--NDGTKKHAKPNPWVKNDSGAAFKAALLSGPPGVGK 550
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMD--- 467
TT A LVC+ LGF +E NASD+R K K + EL+++++L+
Sbjct: 551 TTTATLVCKELGFDTVEFNASDTRSKRLLK----------EEVSELLNSKSLAGYFGGRS 600
Query: 468 ---RSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
SKH VL+MDEVDGM+ DRGG+ +LIA IK S IP+IC+CNDR K++SLVN
Sbjct: 601 EKVSSKH---VLLMDEVDGMAGNEDRGGMQELIALIKESHIPVICMCNDRNHPKIRSLVN 657
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL------Q 577
YC DLRF +PR ++I +M + E L+++ LEE+ GD+R +N L +
Sbjct: 658 YCFDLRFNRPRVEQIKGAMMSVCFKEQLKLSPGVLEEIIAGTGGDVRQTLNHLALYSAGK 717
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDL 636
M+ SLSV D ++ S+ KD I P+ + K+F K + ++++ DL D ++
Sbjct: 718 SMAASLSV---DSAKKHADSAKKDIKIGPWDVIRKVFSAEDHKHMTLNDKADLFFHDYNI 774
Query: 637 VPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLA 696
PL +QENY+ +P + + + R++L A+S+S GD+ +IR N W L ++
Sbjct: 775 APLFVQENYLKVQPKAPRTEWLDRIAL---TADSLSRGDMVERRIRSNMAWSLLPVQAMF 831
Query: 697 SCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG- 755
S ++P M G G+ N F GWLGKNS K RL +++H H +R + G
Sbjct: 832 SSVMPGEFMEGHF----TGQIN---FPGWLGKNSKSMKRKRLAQEIHDH---TRVATSGS 881
Query: 756 RDTLRLDYFSLLLKQLTEPLR 776
R +RLDY LL+ + +PL+
Sbjct: 882 RQAIRLDYAPHLLRSIVQPLQ 902
>gi|440904765|gb|ELR55230.1| Replication factor C subunit 1, partial [Bos grunniens mutus]
Length = 1152
Score = 361 bits (926), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 242/712 (33%), Positives = 369/712 (51%), Gaps = 117/712 (16%)
Query: 143 DVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAP 202
++K+T +P K + + S +P R + ++ R+ P G KE+P+GA
Sbjct: 341 ELKETRTPKKM--KSSPAKKESVSPDEAEKRRTNYQAYRSYLNREGPKALGSKEIPKGAE 398
Query: 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKE 262
+CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS K
Sbjct: 399 NCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKVVA 458
Query: 263 LGTPFLTEDGLFDMIRASKPMKA-LAQAESKKSVEKVAASLPK----------------- 304
+P+ D PM++ + E K+ + S P+
Sbjct: 459 C-SPWQAHDA---------PMRSSVLYTEGKRRKDGKVISSPRFFFPPIFKMKKEKSKLE 508
Query: 305 KSPQ-NIEAKSTSAP----------------KAPIERMKTVASPAKR----KGQNIQQS- 342
++PQ N + K S+P ++ I+ +K AS ++R K Q +++
Sbjct: 509 RTPQKNDQGKRKSSPTKKESESKKCKLTPKRESSIKSLKKEASVSQRGLDFKEQAAEETN 568
Query: 343 ------------------SLTWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHWNEKFLD 381
SL W +KY+P + I+G +Q +L WL +W++
Sbjct: 569 GDSRARNLADDSRESKVESLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLQNWHKS--P 626
Query: 382 TGTKRNGKK------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG 435
+ K++ K ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R
Sbjct: 627 SEDKKHAAKFGKFAGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRS 686
Query: 436 KADAKISKGIGGSNANSIKELVSNEAL---------SANMDRSKHPKTVLIMDEVDGMSA 486
K NS+KE+V+ E+L S+ S + LIMDEVDGM+
Sbjct: 687 K--------------NSLKEIVA-ESLNNTSIKGFYSSGTVHSVGTRHALIMDEVDGMAG 731
Query: 487 G-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQI 545
DRGGI +LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I +M I
Sbjct: 732 NEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSI 791
Query: 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDIS 605
A EGL++ A+ E+ N DIR ++ L + YD + + KD +
Sbjct: 792 AFKEGLKIPPPAMNEIILGANQDIRQVLHNLNMWCARNKALTYDQAKADSHRAKKDIKLG 851
Query: 606 PFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSL 663
PF K+F G + + ++ DL D + PL +QENYI+ +P +AG D K L L
Sbjct: 852 PFDVARKVFVSGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLML 911
Query: 664 IARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFG 723
++RAA+SI DGD+ + IR Q W L + ++ + ++P LM G F F
Sbjct: 912 LSRAADSICDGDLVDRHIRNKQNWSLLPTQAIYASVLPGELMRGYMT-------QFPTFP 964
Query: 724 GWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
WLGK S+MGK+ R ++DL H S ++ + T+ +DY S + L +PL
Sbjct: 965 SWLGKYSSMGKHDRTVQDLALH--MSLRTYSSKRTVNMDYLSHIRDALVQPL 1014
>gi|358412675|ref|XP_003582372.1| PREDICTED: replication factor C subunit 1-like, partial [Bos
taurus]
Length = 1126
Score = 359 bits (921), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 239/678 (35%), Positives = 364/678 (53%), Gaps = 78/678 (11%)
Query: 143 DVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAP 202
++K+T +P K + + S +P R + ++ R+ P G KE+P+GA
Sbjct: 344 ELKETRTPKKM--KSSPAKKESVSPDEAEKRRTNYQAYRSYLNREGPKALGSKEIPKGAE 401
Query: 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKE 262
+CL GLTFVI+ L+S+ER+EA+ LI+R+GG+VTG+V KKTNYL+ D +KS K
Sbjct: 402 NCLEGLTFVITRMLESIERDEAKSLIERYGGKVTGNVIKKTNYLVMGRDSGQSKSDK--- 458
Query: 263 LGTP-FLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAP 321
+G+ F L +++ K L + K K +S KK ++ + K T ++
Sbjct: 459 VGSAVFSAGSSLLALMKKEK--SKLERTPQKNDQGKRKSSPTKKESESKKCKLTPKRESS 516
Query: 322 IERMKTVASPAKR----KGQNIQQS-------------------SLTWTEKYRPKTPNEI 358
I+ +K AS ++R K Q +++ SL W +KY+P + I
Sbjct: 517 IKSLKKEASVSQRGLDFKEQAAEETNGDSRARNLADDSRESKVESLLWVDKYKPTSLKTI 576
Query: 359 VG---NQQLVKQLHTWLAHWNEKFLDTGTKRNGKK------QNDASAEKAAILSGSPGMG 409
+G +Q +L WL +W++ + K++ K ++D S+ KAA+LSG PG+G
Sbjct: 577 IGQQGDQSCANKLLRWLQNWHKS--PSEDKKHAAKFGKFAGKDDGSSFKAALLSGPPGVG 634
Query: 410 KTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL------- 462
KTT A LVCQ LG+ +E+NASD+R K NS+KE+V+ E+L
Sbjct: 635 KTTTASLVCQELGYSYVELNASDTRSK--------------NSLKEIVA-ESLNNTSIKG 679
Query: 463 --SANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLK 519
S+ S + LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR K++
Sbjct: 680 FYSSGTVHSVGTRHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIR 739
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++ L
Sbjct: 740 SLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLNMW 799
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLV 637
+ YD + + KD + PF K+F G + + ++ DL D +
Sbjct: 800 CARNKALTYDQAKADSHRAKKDIKLGPFDVARKVFVSGEETAHMSLMDKSDLFFHDYSIA 859
Query: 638 PLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLAS 697
PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L + ++ +
Sbjct: 860 PLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDRQIRNKQNWSLLPTQAIYA 919
Query: 698 CIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRD 757
++P LM G F F WLGK S+MGK+ R ++DL H S ++ +
Sbjct: 920 SVLPGELMRGYM-------TQFPTFPSWLGKYSSMGKHDRTVQDLALH--MSLRTYSSKR 970
Query: 758 TLRLDYFSLLLKQLTEPL 775
T+ +DY S + L +PL
Sbjct: 971 TVNMDYLSHIRDALVQPL 988
>gi|195152678|ref|XP_002017263.1| GL21622 [Drosophila persimilis]
gi|194112320|gb|EDW34363.1| GL21622 [Drosophila persimilis]
Length = 979
Score = 358 bits (919), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 230/655 (35%), Positives = 340/655 (51%), Gaps = 85/655 (12%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ F R + G KE+P+G PDCL GLTFV++G L+S+EREEAE +IK +GGRV V
Sbjct: 222 YQKFKNRSACLNPGSKEIPKGTPDCLKGLTFVVTGVLESMEREEAESVIKEYGGRVMTVV 281
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS-------------KPMKAL 286
KK YL+ E+ K A+EL L+EDGLFD+IR K K
Sbjct: 282 GKKLMYLVVGEEAGPKKLATAEELNVTILSEDGLFDLIREKSGQGKRQQVKEEIKSPKKE 341
Query: 287 AQAESKKS-----------------VEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVA 329
++ES+ VEK+ + + K+ +++ A++ K E + VA
Sbjct: 342 EKSESRPKKEEPKVKKEVKDQSLAKVEKMDSKVKKEKEESVPAEAVKVKKDKEESVPAVA 401
Query: 330 SPAKRKGQNIQQS--------------SLTWTEKYRPKTPNEIVGNQQL---VKQLHTWL 372
K++ +I S S+ W +K++P EIVG V +L WL
Sbjct: 402 VKVKKEPTSIDTSQAQTRPVVKPLDLGSMAWVDKHKPTNIKEIVGQAGAASNVTKLMNWL 461
Query: 373 AHWNEKFLDTGTKRNGKKQN------DASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426
+ W ++ K+ ++ N D S KAA+LSG PG+GKTT A LV + LGF A+
Sbjct: 462 SKW---YVSHDGKKKAQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATLVVKELGFDAV 518
Query: 427 EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMD---RSKHPKTVLIMDEVDG 483
E NASD+R K K + + L+ N++L ++ ++ K VLIMDEVDG
Sbjct: 519 EFNASDTRSKRLLK----------DEVSTLLGNKSLYGYVNGQSQAVSKKHVLIMDEVDG 568
Query: 484 MSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRL 542
M+ DRGG+ +LIA IK S +PIIC+CNDR K++SLVNYC DLRF++PR ++I ++
Sbjct: 569 MAGNEDRGGMQELIALIKDSSVPIICMCNDRNHPKIRSLVNYCFDLRFQRPRLEQIKGKI 628
Query: 543 MQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDE 602
M I E ++++ +EE+ N DIR +IN + MS + + L +++KD
Sbjct: 629 MSICFKEKVKISPAKVEEIIAATNNDIRQSINHISLMSAGEDIPTQSQAKVELKTASKDL 688
Query: 603 DISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRL 661
+ P+ V K+F K + ++ DL D L PL +Q+NY+ P +D L
Sbjct: 689 KLGPWEVVRKVFTAEEHKRMSFADKCDLFFHDYSLAPLFVQQNYLQVTPQGNKKD---IL 745
Query: 662 SLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNR 721
+A A+++S GD+ + +IR N W L + + S ++P M G G+ N
Sbjct: 746 GKVAATADALSIGDMIDKRIRANSAWSLLPTQAFFSSVLPGEKMAGHF----TGQIN--- 798
Query: 722 FGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG-RDTLRLDYFSLLLKQLTEPL 775
F GWLGKNS K RL ++LH H +R G R ++RLDY LL + PL
Sbjct: 799 FPGWLGKNSRTTKRARLAQELHDH---TRSCTSGSRLSVRLDYAPFLLDNIARPL 850
>gi|412990353|emb|CCO19671.1| predicted protein [Bathycoccus prasinos]
Length = 528
Score = 357 bits (917), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 191/432 (44%), Positives = 263/432 (60%), Gaps = 18/432 (4%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W +KY+P +E++GN + V L WL W K + N +K+N KA ++SG
Sbjct: 23 WADKYKPTRISELIGNGRCVADLRRWLLEWQNK------QGNKEKKNKC---KAVLISGP 73
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT++A +VC LGF +EVNASDSR KA + G+ GS +N +KELV+N L+
Sbjct: 74 PGIGKTSSAIIVCTQLGFSVMEVNASDSRNKASKDVQTGLSGSTSNQVKELVTNRGLNF- 132
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
+ + H VLIMDEVDGMSAGDRGGI+DLI +IK SKIPIICICNDRYSQKLK+L N+C
Sbjct: 133 LKTTIHKNQVLIMDEVDGMSAGDRGGISDLIDTIKRSKIPIICICNDRYSQKLKALQNHC 192
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV 585
+L F++P KQ+I RL I E + L+ + + NGDIR+ +NQLQ L
Sbjct: 193 FELNFQRPTKQQIHGRLSLIMKEENFHMQSNELDTVIESCNGDIRLILNQLQLRKLRTGS 252
Query: 586 IKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENY 645
+ +Q KD ++ + VD L G+ +D RI L ++PDLVPL IQEN+
Sbjct: 253 LSISGGKQ-----LKDINLGVLSIVDVLMGYGASSQTIDRRIALCFNEPDLVPLYIQENF 307
Query: 646 INYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALM 705
RP+ D ++RL + A+ ++SDGD+ +R Q W+L+ S+L +CIIP++++
Sbjct: 308 PQMRPTHCCSD-LQRLIFLGAASCALSDGDLVYSLVRSKQLWELASCSNLLACIIPSSIV 366
Query: 706 HGQRET--LEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDY 763
G RET L GERNF+RF WLGKNS+ K RLL ++H H ++ K + LR Y
Sbjct: 367 SGVRETFNLFPGERNFHRFPAWLGKNSSSSKMRRLLNEMHGHMISKGALKSSSNVLRQHY 426
Query: 764 FSLLLKQLTEPL 775
LL T PL
Sbjct: 427 IPLLRSYTTIPL 438
>gi|198453986|ref|XP_001359419.2| GA10826 [Drosophila pseudoobscura pseudoobscura]
gi|198132600|gb|EAL28565.2| GA10826 [Drosophila pseudoobscura pseudoobscura]
Length = 988
Score = 356 bits (913), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 226/641 (35%), Positives = 336/641 (52%), Gaps = 72/641 (11%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ F R + G KE+P+G PDCL GLTFV++G L+S+EREEAE +IK +GGRV V
Sbjct: 222 YQKFKNRSACLNPGSKEIPKGTPDCLKGLTFVVTGVLESMEREEAESVIKEYGGRVMTVV 281
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS-------------KPMKAL 286
KK YL+ E+ K A+EL L+EDGLFD+IR K K
Sbjct: 282 GKKLMYLVVGEEAGPKKLATAEELNVTILSEDGLFDLIREKSGQGKRQQVKEEIKSPKKE 341
Query: 287 AQAESKKS-----------------VEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVA 329
++ES+ EK+ + + K+ +++ A + K P M T
Sbjct: 342 EKSESRPKKEEPKVKKEVKDQSLAKAEKMDSKVKKEKEESVPAVALKVKKEPTS-MDTSQ 400
Query: 330 SPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL---VKQLHTWLAHWNEKFLDTGTKR 386
+ ++ + + S+ W +K++P EIVG V +L WL+ W ++ K+
Sbjct: 401 AQSRPVVKPLDLGSMAWVDKHKPTNIKEIVGQAGAASNVTKLMNWLSKW---YVSHDGKK 457
Query: 387 NGKKQN------DASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK 440
++ N D S KAA+LSG PG+GKTT A LV + LGF A+E NASD+R K K
Sbjct: 458 KAQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATLVVKELGFDAVEFNASDTRSKRLLK 517
Query: 441 ISKGIGGSNANSIKELVSNEALSANMD---RSKHPKTVLIMDEVDGMSAG-DRGGIADLI 496
+ + L+ N++L ++ ++ K VLIMDEVDGM+ DRGG+ +LI
Sbjct: 518 ----------DEVSTLLGNKSLYGYVNGQSQAVSKKHVLIMDEVDGMAGNEDRGGMQELI 567
Query: 497 ASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEI 556
A IK S +PIIC+CNDR K++SLVNYC DLRF++PR ++I ++M I E ++++
Sbjct: 568 ALIKDSSVPIICMCNDRNHPKIRSLVNYCFDLRFQRPRLEQIKGKIMSICFKEKVKISPA 627
Query: 557 ALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGF 616
+EE+ N DIR +IN + MS + + L +++KD + P+ V K+F
Sbjct: 628 KVEEIIAATNNDIRQSINHISLMSAGEDIPTQSQAKVELKTASKDLKLGPWEVVRKVFTA 687
Query: 617 NGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGD 675
K + ++ DL D L PL +Q+NY+ P +D L +A A+++S GD
Sbjct: 688 EEHKRMSFADKCDLFFHDYSLAPLFVQQNYLQVTPQGNKKD---ILGKVAATADALSIGD 744
Query: 676 IFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKN 735
+ + +IR N W L + + S ++P M G G+ N F GWLGKNS K
Sbjct: 745 MIDKRIRANSAWSLLPTQAFFSSVLPGEKMAGHF----TGQIN---FPGWLGKNSRTTKR 797
Query: 736 LRLLEDLHFHHLASRKSKLG-RDTLRLDYFSLLLKQLTEPL 775
RL ++LH H +R G R ++RLDY LL + PL
Sbjct: 798 ARLAQELHDH---TRSCTSGSRLSVRLDYAPFLLDNIARPL 835
>gi|4103934|gb|AAD01890.1| replication factor C [Rattus norvegicus]
Length = 1104
Score = 353 bits (906), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 227/638 (35%), Positives = 342/638 (53%), Gaps = 63/638 (9%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+EREEA+ LI+R+GG+VTG+
Sbjct: 378 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGN 437
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKT+YL+ D +KS KA LGT L EDGL D+IR K+ + ++ ++K
Sbjct: 438 VSKKTSYLVMGRDSRQSKSDKAAALGTKILDEDGLLDLIRTMPGKKSKYEIAAEAEMKKE 497
Query: 299 AASLPKKSPQNIEAKSTSAP-KAPIERMKTVASPAKRKGQNI------------------ 339
+ L + +N + K +P K +E K+ +P K +
Sbjct: 498 KSKLERTPQKNDQGKRKLSPTKRELEPKKSKLTPLKHSPRKAVKEEERVCPRGLDAKEPH 557
Query: 340 ------QQSSLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHWNEKFLDTGTKRNGK- 389
++ L W +KY+P + I+ G+Q +L WL +W++ + K++ K
Sbjct: 558 GSHSASREECLLWVDKYKPTSLKNIIGQQGDQSCANKLLRWLRNWHKSSPE--EKKHAKF 615
Query: 390 ----KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISK 443
++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K K +++
Sbjct: 616 GKVASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAIVAE 675
Query: 444 GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKIS 502
+ N SIK ++ A + R LIMDEVDGM+ DRGGI +LI IK +
Sbjct: 676 SL---NNTSIKGFYTSGASPSVSARH-----ALIMDEVDGMAGNEDRGGIQELIGLIKHT 727
Query: 503 KIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELA 562
KIPIIC+CNDR K++SLV+YC DLRF++PR ++I ++ IA EGL++ A+ E+
Sbjct: 728 KIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEII 787
Query: 563 DRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGK 620
N D+R ++ L V+ YD + + KD + PF K+F G
Sbjct: 788 LGANQDVRQVLHNLSMWCAQSKVLTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETPH 847
Query: 621 LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQ 680
+ + ++ DL D + PL +QENY++ +P +AG D K L L++RAA+SI DGD+ Q
Sbjct: 848 MSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVANQ 907
Query: 681 IRRNQQWQLSQSSSL---ASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLR 737
IR Q W LS + L S + L H L + R W + R
Sbjct: 908 IRSKQNWSLSHTGHLRQRCSWRVDEGL-HVSVSQLPKAGWESTRL--WASTD-------R 957
Query: 738 LLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
++DL H S ++ + T+ +DY S + L PL
Sbjct: 958 TVQDLSLH--MSLRTYSSKRTVNMDYLSHIRDALVRPL 993
>gi|47210904|emb|CAF94208.1| unnamed protein product [Tetraodon nigroviridis]
Length = 775
Score = 352 bits (904), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 234/685 (34%), Positives = 334/685 (48%), Gaps = 125/685 (18%)
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
G KE+P+GA +CL G FV++G L+S+ER+E + LI+R+GG+VTG++SKKT YL+ D
Sbjct: 7 GSKEIPQGAENCLEGCVFVLTGVLESMERDETKSLIERYGGKVTGNISKKTTYLVQGRDC 66
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIRASKPMK-----ALAQAE------------SKKSV 295
+K KA+ LGT L EDGL ++IR +KP K A+AE + KS
Sbjct: 67 GVSKLEKAESLGTKILDEDGLLELIR-TKPGKKSKYEIAAEAEVGAHSIVSLTHKASKST 125
Query: 296 EKVAASLPKK----SPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQ---------- 341
P K SP TS + R + +P R +
Sbjct: 126 PTTQKISPSKGNSTSPHTPSPSKTSLGQGHTSRTREGRTPPGRGSAQTARRELSLSSSNS 185
Query: 342 ----------------SSLTWTEKYRPKTPNEIVGNQ---QLVKQLHTWLAHWNEKFLDT 382
+L W +KYRP++ ++G Q +L WL +W+
Sbjct: 186 SSSPAEAAVPRRTAGDEALLWVDKYRPRSLKAVIGQQGEQSCANKLLRWLQNWHRHHGGG 245
Query: 383 GTKRNGKK-----QNDASAEKAAILSGSPGMGKTTAAKLVC------------------- 418
K K ++D S KAA+LSG PG+GKTT A LVC
Sbjct: 246 TLKAPAKTGKFGGKDDGSGYKAALLSGPPGVGKTTTASLVCEVSPCLSSGGKRVFGVDGF 305
Query: 419 -----------------QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV---- 457
Q LGF +E+NAS +R K NS+KE+V
Sbjct: 306 LSLSLSVSSHAGFHGHLQELGFSYVEMNASCTRSK--------------NSLKEVVAESV 351
Query: 458 ---SNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDR 513
S E ++ K VLIMDEVDGM+ DRGGI +LIA IK SKIPIIC+CNDR
Sbjct: 352 NNTSIENFYRGTSQTVSSKHVLIMDEVDGMAGNEDRGGIQELIALIKGSKIPIICMCNDR 411
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
K++SL NYC DLRF++PR ++I +M IA EG++ AL E+ N D+R +
Sbjct: 412 NHMKIRSLANYCFDLRFQRPRVEQIKAAMMSIAFKEGIKNLAPALNEIILASNQDVRQVL 471
Query: 574 NQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSM 631
+ L + + V+ YD + + KD I PF K+F G + + ++ DL
Sbjct: 472 HNLSMWTATDKVMSYDRCKADAAKARKDMKIGPFEVCRKVFSAGEEAAHMSLMDKSDLFF 531
Query: 632 SDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQ 691
D L PL +QENY+N RP++AG + L L+++ A+SISDGD+ + +IR Q W L
Sbjct: 532 HDYSLAPLFVQENYLNVRPAAAGGNLKSHLMLLSKTADSISDGDLVDRRIRSGQNWSLLP 591
Query: 692 SSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRK 751
+ ++ + ++P LM G F F WLGKNS+ GK+ R++++L H K
Sbjct: 592 TQAIYASVLPGELMRGYMS-------QFPSFPSWLGKNSSAGKHSRIVQELTAH--MGLK 642
Query: 752 SKLGRDTLRLDYFSLLLKQLTEPLR 776
+ R + LDY L + L PL+
Sbjct: 643 TMSSRQAVNLDYLHYLRQALLRPLQ 667
>gi|330792427|ref|XP_003284290.1| hypothetical protein DICPUDRAFT_96642 [Dictyostelium purpureum]
gi|325085743|gb|EGC39144.1| hypothetical protein DICPUDRAFT_96642 [Dictyostelium purpureum]
Length = 1334
Score = 352 bits (904), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 229/653 (35%), Positives = 344/653 (52%), Gaps = 79/653 (12%)
Query: 172 GRGGGRGGFMNF--GERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIK 229
+ + F+NF G R+ PP+KG+K +P G +CL TF ISG LDSLER+EAE+LIK
Sbjct: 570 AKSAKQMAFLNFKFGTREPPPNKGKKPLPVGKQNCLARYTFFISGVLDSLERDEAENLIK 629
Query: 230 RHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKEL-GTPFLTEDGLFDMI--RASKPMKAL 286
++GG V S KK +++ K KAK++ G F+ EDGLF+MI A +P+K
Sbjct: 630 KYGGNVAKSAVKKLTHMIVGTGAGEQKLEKAKKIRGVVFIDEDGLFEMISKTAPQPIKEE 689
Query: 287 AQ-------------------AESKKSVEK----VAASLPKKSPQNIEAKSTSAPKA--- 320
+ A + K + K + SLP K +T++ +
Sbjct: 690 TKEEQEEMVSTPPLSSSPPTTAAASKGIAKPTLPIKPSLPLKPNTTATTTTTTSSASSFK 749
Query: 321 PIERMKTVASPAKRKGQNIQQSSLT---------------WTEKYRPKTPNEIVGNQQLV 365
P ++ +P Q I SS+ W EKY+PK +++GN +
Sbjct: 750 PASGLQYAYTPP---PQTISMSSIVVPPNISSIPKGHDQLWVEKYKPKDLKDLIGNGSVF 806
Query: 366 KQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA 425
+QL +L+ WN+K KRN A +LSG PG+GKT+AA L+C++ GF+
Sbjct: 807 EQLSLFLSQWNQKQPKDPNKRN-----------AVLLSGPPGIGKTSAAILLCKLKGFEP 855
Query: 426 IEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS 485
IE+NASD+R K++ I + + G++ N + +SN + ++ K +I+DE+DG S
Sbjct: 856 IELNASDTRSKSE--IERVLKGASDN---QNISNFFSAQPTEKKKI--NAIILDEIDGSS 908
Query: 486 AG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544
DRGGIA++I IK SK+P ICICND YS K+KSL NYC DLR ++P ++ R++Q
Sbjct: 909 GNSDRGGIAEIIQLIKKSKVPFICICNDYYSNKIKSLKNYCMDLRLKRPTAAQVTTRILQ 968
Query: 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDI 604
IA E ++V +E++ + DIR IN LQ L+ S YD+ +KD DI
Sbjct: 969 IAKHEDMKVTNYMVEKIFVSTHSDIRQTINTLQM--LARSKKSYDNFTIEKAIESKDFDI 1026
Query: 605 SPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLI 664
+PF+AV+ LF + G + + +++ SD LVPLL+QENY++ P R+ + +
Sbjct: 1027 TPFSAVELLFKTSNGDI--NTQLEYFFSDFSLVPLLVQENYLSITPYGTDRNNLP-IEKY 1083
Query: 665 ARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGG 724
+ AA++I D D + + WQL S +AS I+PA + G + RF
Sbjct: 1084 SDAADAICDSDEIGRAVGKEMAWQLLPSYGVASSILPAGYVRGTPNVMPL------RFPT 1137
Query: 725 WLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRV 777
+LGK S K R ++DL H ++ + RD RL Y +L L EPL V
Sbjct: 1138 YLGKYSNASKQQRFVKDLQLHMRSTSNTFSNRDETRLYYVPMLKHYLIEPLVV 1190
>gi|157117839|ref|XP_001653061.1| replication factor C large subunit, putative [Aedes aegypti]
gi|108883325|gb|EAT47550.1| AAEL001324-PA [Aedes aegypti]
Length = 1047
Score = 351 bits (901), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 232/679 (34%), Positives = 343/679 (50%), Gaps = 119/679 (17%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ F R+ P + G KE+P+G PDCL GL FV++G L+S+ER+E +IK GG+V GSV
Sbjct: 256 YQKFKNRQGPANPGSKEIPKGKPDCLAGLQFVVTGVLESMERDECAQVIKDFGGKVVGSV 315
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASK--PMK------------- 284
SKK +++ ED +K KA ELG P ++ED L D+IR P K
Sbjct: 316 SKKLTHMVVGEDAGPSKLAKADELGIPQISEDDLLDLIREKSGLPKKGSGSSGAKEEKVK 375
Query: 285 -----ALAQAESKKSVEKVAASLPKK-SPQN-----------------------IEAKST 315
+ ++ + +K+ E + + KK +P+N IE +S
Sbjct: 376 PKEEKSPSKEKKRKTTEHDSEARKKKTTPENKRTPDKKHSEFSSPVAKLPKIPKIEKRSP 435
Query: 316 SAPKAPIERMKTV---------ASPAKRKGQNIQQ-----SSLTWTEKYRPKTPNEIVGN 361
A IE+ V +P KR+ + Q+ ++ W +KY+P + +I+G
Sbjct: 436 EAKPVKIEKSSPVKKSPIKSEPIAPIKREVTSYQKDINSTENMAWVDKYKPTSVKQIIGQ 495
Query: 362 QQLVKQLH---TWLAHWNEKFLDTGTKRNGKKQ----------NDASAEKAAILSGSPGM 408
+H WL+ W+ + +GKK+ +D + KAA+LSG PG+
Sbjct: 496 SGPASNVHKLMNWLSKWH-------SNHDGKKKLVRPSPWAKNDDGAYFKAALLSGPPGV 548
Query: 409 GKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDR 468
GKTT A LVC+ LGF A+E NASD+R K K + EL++N++L
Sbjct: 549 GKTTTATLVCKELGFDAVEFNASDTRSKKLLK----------EEVSELLNNKSLFGYFTE 598
Query: 469 SKH-----PKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
K VLIMDEVDGM+ DRGGI +LI IK S +PIIC+CNDR QK++SLV
Sbjct: 599 GGKGDKVSKKHVLIMDEVDGMAGNEDRGGIQELIGLIKDSHVPIICMCNDRNHQKMRSLV 658
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
NYC DLRF KPR ++I +M + EGL++ ALEE+ GD+R +N L S
Sbjct: 659 NYCFDLRFNKPRVEQIKGAMMSVCFKEGLKLAPGALEEIISGTGGDVRQTLNHLALYSAG 718
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLI 641
D ++ ++ KD + P+ V K+F K + + ++ DL D L PL +
Sbjct: 719 ----NVDQAKKEAETARKDVKMGPWDVVRKVFSAEEHKTMSIHDKSDLFFHDYSLAPLFV 774
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIP 701
QENY+ P + + + +A AA+S+S GD+ + +IR + W L ++ S ++P
Sbjct: 775 QENYLKVAPRVP---KSQLMDQVALAADSLSRGDMVDRRIRSSMAWSLLPLQAMYSSVLP 831
Query: 702 AALMHGQRETLEQGERNFN---RFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG-RD 757
M G NF F GWLGKNS K RL +++H H +R S G R
Sbjct: 832 GEYMEG----------NFTGQINFPGWLGKNSKASKRKRLAQEIHDH---TRISTSGSRL 878
Query: 758 TLRLDYFSLLLKQLTEPLR 776
++RLDY L+ + PL+
Sbjct: 879 SVRLDYAPFLVDAIVRPLK 897
>gi|291385663|ref|XP_002709319.1| PREDICTED: germ line transcription factor 1-like [Oryctolagus
cuniculus]
Length = 1152
Score = 350 bits (899), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 224/644 (34%), Positives = 340/644 (52%), Gaps = 80/644 (12%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+EREEA+ LI+R+GG+VTG+
Sbjct: 404 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGN 463
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT + EDGL ++IR K+ + + ++K
Sbjct: 464 VSKKTNYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIRTMPGKKSKYEIAVEAEMKKE 523
Query: 299 AASLPKKSPQNIEAKSTSAP-KAPIERMKTVASPAK--------------RKGQNIQQS- 342
+ L K +N + K S+P K E K+ +P + R+G + Q+
Sbjct: 524 KSKLEKTPQKNNQGKRKSSPTKKESESKKSRLTPQRDSSIKSAKKEASVFRRGLDFQEQV 583
Query: 343 -----------------------SLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHWN 376
+L W +KY+P + I+ G+Q +L WL +W+
Sbjct: 584 PEEPPADSSTGNVADGSSENKLENLLWVDKYKPTSLKSIIGQQGDQSCANKLLRWLRNWH 643
Query: 377 EKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436
+ + ++ QN + S + GKT + LG+ +E+NASD+R K
Sbjct: 644 K---SSPEEKKHDNQN--------VGSDTVDKGKTNEPE-----LGYSYVELNASDTRSK 687
Query: 437 ADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIA 493
K +++ + N SIK S+ A S K LIMDEVDGM+ DRGGI
Sbjct: 688 NSLKAVVAESL---NNTSIKGFYSSGAAP-----SGSVKHALIMDEVDGMAGNEDRGGIQ 739
Query: 494 DLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEV 553
+LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++I +M IA EGL++
Sbjct: 740 ELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKI 799
Query: 554 NEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKL 613
A+ E+ N DIR ++ L + YD + + KD + PF K+
Sbjct: 800 PPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKLGPFDVARKV 859
Query: 614 F--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESI 671
F G + + ++ DL D + PL +QENYI+ +P +AG D K L L++RAA+SI
Sbjct: 860 FAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSI 919
Query: 672 SDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNST 731
DGD+ + QIR Q W L + ++ + ++P LM G F F WLGK+S+
Sbjct: 920 CDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRGYM-------TQFPNFPSWLGKHSS 972
Query: 732 MGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
GK+ R+++DL H S ++ + T+ +DY S + L +PL
Sbjct: 973 TGKHDRIVQDLALH--MSLRTYSSKRTVNMDYLSHIRDALVQPL 1014
>gi|391342732|ref|XP_003745669.1| PREDICTED: replication factor C subunit 1 [Metaseiulus
occidentalis]
Length = 906
Score = 349 bits (895), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 272/843 (32%), Positives = 403/843 (47%), Gaps = 113/843 (13%)
Query: 4 DIRKWFLKPHSKDKDNATIPANTALSNLETTNSEPGCGGHE----SMGRRKTSKYFATDK 59
DIR +F + +K K + P + E T + P +E + K+ K T K
Sbjct: 2 DIRNFFGRTPTKSKKETSTPTVS-----EGTKTTPSPSKNEKRTPEASKSKSFKSPLTPK 56
Query: 60 QKPEDGGE-KEELPAKR------KAEKDDGKSVRSSPLKKFHKADDDDDDFVPPSVKKNS 112
K +G K P KR +++D+ K+ R SP+KK + D+ PPS + S
Sbjct: 57 SKSSNGSAVKSSAPPKRAVHEISSSDEDEPKTPRRSPVKKEKISADEYFKSSPPSGSRTS 116
Query: 113 VGATPSKKLKSGSGRA------------VAQKSVDIDD---------------DEEEDVK 145
+P K K S + +++KS ++ DE +
Sbjct: 117 ERRSPRKSEKHTSPKKETATKKEPETPKISRKSENVPKTKSTIQSKQASGSMGDEAPKKR 176
Query: 146 KTES--PLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPD 203
K ES ++S+ + R A GR G ++ + R+ P H GEK+ PEG+P+
Sbjct: 177 KIESDEEVESATKRRKETSAPEPSPRGRASTGNGASYLAYLNREPPRHLGEKDHPEGSPE 236
Query: 204 CLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKEL 263
C+ T V++G +D +E++E + ++++ GG++T S+S KT +L+ D AK +A+ +
Sbjct: 237 CMKKFTIVMTGVMDYVEKDEIKRIVEQCGGKITSSISGKTTHLIAGRDAGPAKVARAQAV 296
Query: 264 GTPFLTEDGLFDMIRA----SKPMKALAQAESKKSVEKVAASLPKKSPQNIEA--KSTSA 317
G L E FD + + SK KA + + + V K+ + K S
Sbjct: 297 GAKVLEELEWFDYVESITDTSKAFKAKERVDPVEEVMMEIEEAEAKAKAKKSSPRKPKSD 356
Query: 318 PKAPIERMKTVASPAKRK--------GQNIQQSS--------LTWTEKYRPKTPNEIVG- 360
P KT +SP KRK G Q S+ L W +KY P +I+G
Sbjct: 357 PAREGAHSKTRSSPEKRKETQSAAACGSESQPSTSAAKAPPALMWVDKYMPSATKQIIGQ 416
Query: 361 --NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVC 418
+Q V +L WL W+ K N K + +AA+LSG PG+GKTT+A LVC
Sbjct: 417 QGDQSNVAKLRRWLTQWSTK---QKAPFNKFKNPTGAGLRAALLSGPPGVGKTTSAHLVC 473
Query: 419 QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478
+ LGF+ IE+NASD+R K K + L+SN L++ + KH VLIM
Sbjct: 474 KELGFEIIEMNASDTRSKRSLK----------EEVATLLSNRTLNSTNAKRKH---VLIM 520
Query: 479 DEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQE 537
DEVDGMS DRGG+ +LI IK S +PIICICNDR K++SLVNYC DLRF KP+ ++
Sbjct: 521 DEVDGMSGNQDRGGMQELIQLIKSSMVPIICICNDRTHPKMRSLVNYCFDLRFYKPQVKQ 580
Query: 538 IAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLS 597
I LM + EG++V +EE+ N DIR ++ L I +Q++
Sbjct: 581 IQAALMSLCFKEGVKVPPKTIEEIIVASNQDIRQCVHSLNL----FCAINDSSSKQQV-- 634
Query: 598 SAKDEDISPFTAVDK-LFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSA--G 654
KD I PF V K L GG L ++ER L +D + VPL +QENYI +P +
Sbjct: 635 -TKDVKIGPFDVVKKFLVSSEGGSLNLNERQSLFFNDYNAVPLFVQENYIKVQPKNCVRK 693
Query: 655 RDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQ 714
RD ++RLS ++E+I GD + QIR + W L ++ + +IP+ M G
Sbjct: 694 RDLLQRLS---DSSEAICIGDTVDRQIRSSNAWALLSVQAMYAAVIPSVRMQGTM----- 745
Query: 715 GERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLR--LDYFSLLLKQLT 772
R F GW GK ST GK+ R + L+ H K + DT Y L+ K++
Sbjct: 746 --REMVNFPGWFGKYSTTGKHARQAQALNAHM----KCLISGDTFETTTQYMPLMTKKIM 799
Query: 773 EPL 775
PL
Sbjct: 800 MPL 802
>gi|195343531|ref|XP_002038351.1| GM10782 [Drosophila sechellia]
gi|194133372|gb|EDW54888.1| GM10782 [Drosophila sechellia]
Length = 980
Score = 348 bits (894), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 231/649 (35%), Positives = 336/649 (51%), Gaps = 82/649 (12%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + R + G KE+P+G+PDCL GLTFV++G L+S+EREEAE +IK +GG+V V
Sbjct: 212 YQKYKNRSSCLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVV 271
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALA------------ 287
KK YL+ E+ K A EL P L+EDGLFD+IR L
Sbjct: 272 GKKLKYLVVGEEAGPKKLAMADELNIPILSEDGLFDLIREKSGNAKLVKEEKKNPEEKEK 331
Query: 288 ---------------QAESKKSVEKVAA---------SLPKKSPQ---NIEAKSTSAPKA 320
+ +KS EK A + PK+S + ++ A + K
Sbjct: 332 KEVKTSRRSNDKKEKEVTKQKSSEKHDAAKHKVKEEHTSPKESKEKLNDVPAVTLKVKKE 391
Query: 321 PIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL---VKQLHTWLAHWNE 377
P + + SP + + + W +K++P EIVG V +L WL+ W
Sbjct: 392 PGTQKEHAPSPRTAEPKTQDMVGMAWVDKHKPTNIKEIVGQAGAASNVTKLMNWLSKWYV 451
Query: 378 KFLDTGTKRNGK-----KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432
G K+ + K +D S KAA+LSG PG+GKTT A LV + LGF A+E NASD
Sbjct: 452 NH--DGNKKPQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATLVVKELGFDAVEFNASD 509
Query: 433 SRGKADAKISKGIGGSNANSIKELVSNEALSANMD---RSKHPKTVLIMDEVDGMSAG-D 488
+R K K + + L+SN++LS ++ K VLIMDEVDGM+ D
Sbjct: 510 TRSKRLLK----------DEVSTLLSNKSLSGYFTGQGQAVSRKHVLIMDEVDGMAGNED 559
Query: 489 RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
RGG+ +LIA IK S IPIIC+CNDR K++SLVNYC DLRF++PR ++I ++M I
Sbjct: 560 RGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVNYCYDLRFQRPRLEQIKGKIMSICFK 619
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFT 608
E ++++ +EE+ N DIR +IN + +S K Q++ + KD + P+
Sbjct: 620 EKVKISPAKVEEIIAATNNDIRQSINHIALLSAKEDASKKSG--QQI--ATKDLKLGPWE 675
Query: 609 AVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARA 667
V K+F + K + ++ DL D L PL +Q+NY+ P +D L+ +A
Sbjct: 676 VVRKVFTADEHKHMSFADKSDLFFHDYSLAPLFVQQNYLQVLPQGNKKD---VLAKVAAT 732
Query: 668 AESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLG 727
A+++S GD+ +IR N W L + +L S ++P M G G+ N F GWLG
Sbjct: 733 ADALSLGDLVEKRIRANSAWSLLPTQALFSSVLPGEHMCGHF----TGQIN---FPGWLG 785
Query: 728 KNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
KNS GK RL ++LH H + + S+L ++RLDY LL + PL
Sbjct: 786 KNSKSGKRARLAQELHDHTRVCTSGSRL---SVRLDYAPFLLDNIVRPL 831
>gi|194898632|ref|XP_001978873.1| GG12593 [Drosophila erecta]
gi|190650576|gb|EDV47831.1| GG12593 [Drosophila erecta]
Length = 981
Score = 348 bits (893), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 237/659 (35%), Positives = 342/659 (51%), Gaps = 96/659 (14%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + R + G KE+P+G+PDCL GLTFV++G L+S+EREEAE +IK +GGRV V
Sbjct: 211 YQKYKNRSSCLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGRVMTVV 270
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS------------------- 280
KK YL+ E+ K A+EL P L+EDGLFD+IR
Sbjct: 271 GKKLKYLVVGEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGMAKQVKEEKKSPKEEHG 330
Query: 281 ------KPMKALAQAESKKSVE----------KVAASLPKK---SPQ-------NIEAKS 314
K +K ++ KK E VA KK SP+ N+ A +
Sbjct: 331 SEEKERKEVKTSRRSNDKKEKEVTKHRSGEMHDVAKHKVKKEHTSPKEMMEKLNNVPAVT 390
Query: 315 TSAPKAPIERMKTVASP--AKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL---VKQLH 369
K P + + SP A+ K Q++ + W +K++P EIVG V +L
Sbjct: 391 LKVKKEPSSQKENYPSPRTAELKTQDV--VGMAWVDKHKPTNIKEIVGQAGAASNVTKLM 448
Query: 370 TWLAHWNEKFLDTGTKRNGK-----KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424
WL+ W G K+ + K +D S KAA+LSG PG+GKTT A LV + LGF
Sbjct: 449 NWLSKWYVNH--DGNKKPQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATLVVKELGFD 506
Query: 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMD---RSKHPKTVLIMDEV 481
A+E NASD+R K K + + L+SN++LS ++ K VLIMDEV
Sbjct: 507 AVEFNASDTRSKRLLK----------DEVSTLLSNKSLSGYFTGQGQAVSRKHVLIMDEV 556
Query: 482 DGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK 540
DGM+ DRGG+ +LIA IK S IPIIC+CNDR K++SLVNYC DLRF++PR ++I
Sbjct: 557 DGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVNYCYDLRFQRPRLEQIKG 616
Query: 541 RLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQR--LLSS 598
++M I E ++++ +EE+ N DIR +IN + +S +D Q+ +
Sbjct: 617 KIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALLSAK------EDGSQKSGQQVA 670
Query: 599 AKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDE 657
KD + P+ V K+F + K + + ++ DL D L PL +Q+NY+ P D
Sbjct: 671 TKDLKLGPWEVVRKVFTADEHKHMTLGDKSDLFFHDYSLAPLFVQQNYLQVLPQGNKSD- 729
Query: 658 VKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGER 717
L+ +A A+++S GD+ + +IR N W L + + S ++P M G G+
Sbjct: 730 --VLAKVAATADALSLGDLVDKRIRANSAWSLLPTQAFFSSVLPGEHMCGHF----TGQI 783
Query: 718 NFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
N F GWLGKNS GK RL ++LH H + + S+L ++RLDY LL + PL
Sbjct: 784 N---FPGWLGKNSKSGKRARLAQELHDHTRVCTSASRL---SVRLDYAPFLLNNIVRPL 836
>gi|170065938|ref|XP_001868075.1| replication factor C large subunit [Culex quinquefasciatus]
gi|167862647|gb|EDS26030.1| replication factor C large subunit [Culex quinquefasciatus]
Length = 1042
Score = 348 bits (893), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 239/679 (35%), Positives = 348/679 (51%), Gaps = 125/679 (18%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ F R+ P + G KE+P+G P CL GL FV++G ++S+ER+E +IK GG+V SV
Sbjct: 248 YKKFQSRQGPANPGSKEIPKGTPTCLAGLQFVVTGVMESMERDECAQVIKDFGGKVVTSV 307
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR--ASKPMKA------------ 285
SKK +++ ED +K KA ELG P ++ED LFD+IR + P+KA
Sbjct: 308 SKKLTHMVVGEDAGPSKLAKADELGIPQISEDQLFDLIRERSGLPVKAESKPKVKEEKPK 367
Query: 286 ---------------LAQAESKK------SVEKVAASLPK------KSPQN-----IEAK 313
A+ E KK + + A LPK +SP+ IE K
Sbjct: 368 IKEEKSPSKEKKRTKTAEQEVKKRTPEKHKLSESVAKLPKIPKIEKRSPEQSKPIKIEKK 427
Query: 314 STSAPK-----APIERMKTVASPAKRKGQNIQQS-SLTWTEKYRPKTPNEIVGNQ---QL 364
S PK PI R +T ++IQ + ++ W +KY+P + +I+G
Sbjct: 428 S---PKKEPEMPPINREETAYQ------KDIQSTDNMAWVDKYKPTSIKQIIGQAGPASN 478
Query: 365 VKQLHTWLAHWNEKFLDTGTKRNGKK----------QNDASAEKAAILSGSPGMGKTTAA 414
V++L WL+ W+ + +GKK +D + KAA+LSG PG+GKTT A
Sbjct: 479 VQKLLNWLSKWH-------SNHDGKKVLQRPSPWAKNDDGAYFKAALLSGPPGVGKTTTA 531
Query: 415 KLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANM------DR 468
LVC+ LGF A+E NASD+R K K + EL++N++L D+
Sbjct: 532 TLVCKELGFDAVEFNASDTRSKKLLK----------EQVSELLTNKSLFGYFTGNGKGDK 581
Query: 469 SKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSD 527
H K VL+MDEVDGM+ DRGGI +LI IK S +PIIC+CNDR QK++SLVNYC D
Sbjct: 582 VTH-KHVLVMDEVDGMAGNEDRGGIQELIGLIKDSHVPIICMCNDRNHQKMRSLVNYCFD 640
Query: 528 LRFRKPRKQEIAKRLMQIANAE-GLEVNEIALEELADRVNGDIRMAINQLQYMS----LS 582
LRF KPR ++I R + + GL++ ALEE+ GD+R +N L S L
Sbjct: 641 LRFNKPRVEQIKVRRHDVGLLQGGLKLAPGALEEIIAGTGGDVRQTLNHLALHSTGKTLG 700
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLI 641
+ + +Q ++ KD + P+ + K+F + + + ++ DL D L PL +
Sbjct: 701 GTSLSAAQAKQEAQTARKDVKMGPWDVIRKVFSAEDHRTMSIHDKSDLFFHDYSLAPLFV 760
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIP 701
QENY+ P + + L IA AA+S+S GD+ + +IR + W L ++ S ++P
Sbjct: 761 QENYLKVTPKVP---KAQHLDQIALAADSLSRGDLIDRRIRSSMAWSLLPMQAMFSSVLP 817
Query: 702 AALMHGQRETLEQGERNFN---RFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG-RD 757
M G NF F GWLGKNS K RL +++H H +R S G R
Sbjct: 818 GEYMEG----------NFTGQINFPGWLGKNSKASKRKRLAQEIHDH---TRMSTSGSRL 864
Query: 758 TLRLDYFSLLLKQLTEPLR 776
++RLDY LL + PL+
Sbjct: 865 SVRLDYAPYLLGSIVRPLQ 883
>gi|17737765|ref|NP_524229.1| germ line transcription factor 1, isoform A [Drosophila
melanogaster]
gi|12644230|sp|P35600.2|RFC1_DROME RecName: Full=Replication factor C subunit 1; AltName:
Full=Activator 1 140 kDa subunit; AltName:
Full=Activator 1 subunit 1; AltName: Full=Germline
transcription factor 1; AltName: Full=Replication factor
C large subunit
gi|2121267|gb|AAB58311.1| replication factor C large subunit [Drosophila melanogaster]
gi|7296805|gb|AAF52082.1| germ line transcription factor 1, isoform A [Drosophila
melanogaster]
gi|28317228|gb|AAO39621.1| GH06471p [Drosophila melanogaster]
Length = 986
Score = 346 bits (888), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 230/657 (35%), Positives = 335/657 (50%), Gaps = 92/657 (14%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + R + G KE+P+G+PDCL GLTFV++G L+S+EREEAE +IK +GG+V V
Sbjct: 212 YQKYKNRSSCLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVV 271
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR--------------------- 278
KK YL+ E+ K A+EL P L+EDGLFD+IR
Sbjct: 272 GKKLKYLVVGEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGIAKQVKEEKKSPKKEHS 331
Query: 279 ----ASKPMKALAQAESKKSVEKVAASLPKK-------------SPQNIEAKSTSAP--- 318
K +K ++ KK E +K SP+ + K P
Sbjct: 332 SEEKGKKEVKTSRRSSDKKEKEATKLKYGEKHDIAKHKVKEEHTSPKETKDKLNDVPAVT 391
Query: 319 ----KAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL---VKQLHTW 371
K P + + SP + + + W +K++P + EIVG V +L W
Sbjct: 392 LKVKKEPSSQKEHPPSPRTADLKTLDVVGMAWVDKHKPTSIKEIVGQAGAASNVTKLMNW 451
Query: 372 LAHWNEKFLDTGTKRNGK-----KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426
L+ W G K+ + K +D S KAA+LSG PG+GKTT A LV + LGF A+
Sbjct: 452 LSKWYVNH--DGNKKPQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATLVVKELGFDAV 509
Query: 427 EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMD---RSKHPKTVLIMDEVDG 483
E NASD+R K K + + L+SN++LS ++ K VLIMDEVDG
Sbjct: 510 EFNASDTRSKRLLK----------DEVSTLLSNKSLSGYFTGQGQAVSRKHVLIMDEVDG 559
Query: 484 MSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRL 542
M+ DRGG+ +LIA IK S IPIIC+CNDR K++SLVNYC DLRF++PR ++I ++
Sbjct: 560 MAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVNYCYDLRFQRPRLEQIKGKI 619
Query: 543 MQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQR--LLSSAK 600
M I E ++++ +EE+ N DIR +IN + +S +D Q+ + K
Sbjct: 620 MSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALLSAK------EDASQKSGQQVATK 673
Query: 601 DEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
D + P+ V K+F + K + ++ DL D L PL +Q+NY+ P +D
Sbjct: 674 DLKLGPWEVVRKVFTADEHKHMSFADKSDLFFHDYSLAPLFVQQNYLQVLPQGNKKD--- 730
Query: 660 RLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNF 719
L+ +A A+++S GD+ +IR N W L + + S ++P M G G+ N
Sbjct: 731 VLAKVAATADALSLGDLVEKRIRANSAWSLLPTQAFFSSVLPGEHMCGHF----TGQIN- 785
Query: 720 NRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F GWLGKNS GK RL ++LH H + + S+L ++RLDY LL + PL
Sbjct: 786 --FPGWLGKNSKSGKRARLAQELHDHTRVCTSGSRL---SVRLDYAPFLLDNIVRPL 837
>gi|195568307|ref|XP_002102159.1| GD19753 [Drosophila simulans]
gi|194198086|gb|EDX11662.1| GD19753 [Drosophila simulans]
Length = 980
Score = 346 bits (887), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 230/651 (35%), Positives = 336/651 (51%), Gaps = 86/651 (13%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + R + G KE+P+G+PDCL GLTFV++G L+S+EREEAE +IK +GG+V V
Sbjct: 212 YQKYKNRSSCLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVV 271
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALA------------ 287
KK YL+ E+ K A EL P L+EDGLFD+IR + L
Sbjct: 272 GKKLKYLVVGEEAGPKKLAMADELNIPILSEDGLFDLIREKSGIAKLVKEEKKSPEEKEK 331
Query: 288 ---------------QAESKKSVEKVAA---------SLPKKSPQ---NIEAKSTSAPKA 320
+ +K+ EK A + PK+S + ++ A + K
Sbjct: 332 KEVKTSRRSNDKKEKEVTKQKNSEKHDAAKHKVKEEHTSPKESKEKLNDVPAVTLKVKKE 391
Query: 321 PIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL---VKQLHTWLAHWNE 377
P + + SP + + + W +K++P EIVG V +L WL+ W
Sbjct: 392 PGSQKEHAPSPRTAEPKTQDMVGMAWVDKHKPTNIKEIVGQAGAASNVTKLMNWLSKWYV 451
Query: 378 KFLDTGTKRNGK-----KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432
G K+ + K +D S KAA+LSG PG+GKTT A LV + LGF A+E NASD
Sbjct: 452 NH--DGNKKPQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATLVVKELGFDAVEFNASD 509
Query: 433 SRGKADAKISKGIGGSNANSIKELVSNEALSANMD---RSKHPKTVLIMDEVDGMSAG-D 488
+R K K + + L+SN++LS ++ K VLIMDEVDGM+ D
Sbjct: 510 TRSKRLLK----------DEVSTLLSNKSLSGYFTGQGQAVSRKHVLIMDEVDGMAGNED 559
Query: 489 RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
RGG+ +LIA IK S IPIIC+CNDR K++SLVNYC DLRF++PR ++I + M I
Sbjct: 560 RGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVNYCYDLRFQRPRLEQIKGKGMSICFK 619
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQR--LLSSAKDEDISP 606
E ++++ +EE+ N DIR +IN + +S +D Q+ + KD + P
Sbjct: 620 EKVKISTAKVEEIIAATNNDIRQSINHIALLSAK------EDASQKSGQQIATKDLKLGP 673
Query: 607 FTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIA 665
+ V K+F + K + ++ DL D L PL +Q+NY+ P +D L+ +A
Sbjct: 674 WEVVRKVFTADEHKHMSFADKSDLFFHDYSLAPLFVQQNYLQVLPQGNKKD---VLAKVA 730
Query: 666 RAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGW 725
A+++S GD+ +IR N W L + +L S ++P M G G+ N F GW
Sbjct: 731 ATADALSLGDLVEKRIRANSAWSLLPTQALFSSVLPGEHMCGHF----TGQIN---FPGW 783
Query: 726 LGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
LGKNS GK RL ++LH H + + S+L ++RLDY LL + PL
Sbjct: 784 LGKNSKSGKRARLAQELHDHTRVCTSGSRL---SVRLDYAPFLLDNIVRPL 831
>gi|304728|gb|AAA28573.1| transcription factor [Drosophila melanogaster]
Length = 986
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 229/657 (34%), Positives = 334/657 (50%), Gaps = 92/657 (14%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + R + G KE+P+G+PDCL GLTFV++G L+S+EREEAE +IK +GG+V V
Sbjct: 212 YQKYKNRSSCLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVV 271
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR--------------------- 278
KK YL+ E+ K A+EL P L+EDGLFD+IR
Sbjct: 272 GKKLKYLVVGEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGIAKQVKEEKKSPKKEHS 331
Query: 279 ----ASKPMKALAQAESKKSVEKVAASLPKK-------------SPQNIEAKSTSAP--- 318
K +K ++ KK E +K SP+ + K P
Sbjct: 332 SEEKGKKEVKTSRRSSDKKEKEATKLKYGEKHDIAKHKVKEEHTSPKETKDKLNDVPAVT 391
Query: 319 ----KAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL---VKQLHTW 371
K P + + SP + + + W +K++P + EIVG V +L W
Sbjct: 392 LKVKKEPSSQKEHPPSPRTADLKTLDVVGMAWVDKHKPTSIKEIVGQAGAASNVTKLMNW 451
Query: 372 LAHWNEKFLDTGTKRNGK-----KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426
L+ W G K+ + K +D S KAA+LSG PG+GKTT A LV + LGF A+
Sbjct: 452 LSKWYVNH--DGNKKPQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATLVVKELGFDAV 509
Query: 427 EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMD---RSKHPKTVLIMDEVDG 483
E NASD+R K K + + L+SN++LS ++ K VLIMDEVD
Sbjct: 510 EFNASDTRSKRLLK----------DEVSTLLSNKSLSGYFTGQGQAVSRKHVLIMDEVDA 559
Query: 484 MSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRL 542
M+ DRGG+ +LIA IK S IPIIC+CNDR K++SLVNYC DLRF++PR ++I ++
Sbjct: 560 MAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVNYCYDLRFQRPRLEQIKGKI 619
Query: 543 MQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQR--LLSSAK 600
M I E ++++ +EE+ N DIR +IN + +S +D Q+ + K
Sbjct: 620 MSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALLSAK------EDASQKSGQQVATK 673
Query: 601 DEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
D + P+ V K+F + K + ++ DL D L PL +Q+NY+ P +D
Sbjct: 674 DLKLGPWEVVRKVFTADEHKHMSFADKSDLFFHDYSLAPLFVQQNYLQVLPQGNKKD--- 730
Query: 660 RLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNF 719
L+ +A A+++S GD+ +IR N W L + + S ++P M G G+ N
Sbjct: 731 VLAKVAATADALSLGDLVEKRIRANSAWSLLPTQAFFSSVLPGEHMCGHF----TGQIN- 785
Query: 720 NRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F GWLGKNS GK RL ++LH H + + S+L ++RLDY LL + PL
Sbjct: 786 --FPGWLGKNSKSGKRARLAQELHDHTRVCTSGSRL---SVRLDYAPFLLDNIVRPL 837
>gi|195452278|ref|XP_002073285.1| GK14054 [Drosophila willistoni]
gi|194169370|gb|EDW84271.1| GK14054 [Drosophila willistoni]
Length = 983
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 235/676 (34%), Positives = 342/676 (50%), Gaps = 119/676 (17%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ ++ R + G KE+P+GAPDCL GLTFV++G L+S+EREEAE +IK +GGRV V
Sbjct: 193 YQHYKNRSSCLNHGSKEIPKGAPDCLKGLTFVVTGVLESMEREEAESVIKEYGGRVMTVV 252
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA-SKPMKALAQAESKKSVEKV 298
KK YL+ ED K A+EL P L+EDGLFD+IR S K + +SK
Sbjct: 253 GKKLKYLVVGEDAGPKKLAVAEELNIPILSEDGLFDLIRELSGQSKGPQENDSK------ 306
Query: 299 AASLPKKSPQNIE---AKSTSA----------PKAPIERMKTVASPAKRKGQ-------- 337
+ K++P+NI+ A + +A PK+ IE+ K ASP K K +
Sbjct: 307 ---VKKETPENIKKEKAHTETAVKIKKEKEISPKSKIEKEKKNASPPKVKKEREESNNNL 363
Query: 338 ---------------------------------------NIQQSSLTWTEKYRPKTPNEI 358
++ + ++ W +KY+P + +I
Sbjct: 364 KKHEEKLDSSSKKSEEKKSEKDASGFRVKTEARPEFEKESLSELNVAWVDKYKPTSIKDI 423
Query: 359 VGNQQL---VKQLHTWLAHWNEKFLDTGTKRNGKKQ----------NDASAEKAAILSGS 405
VG V +L WL W T +GKK+ +D S KAA+LSG
Sbjct: 424 VGQAGAASNVTKLLNWLTKWY-------TNHDGKKKLQRPNPWAKNDDGSFYKAALLSGP 476
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKTT A LV + LGF A+E NASD+R K K + L+ N+ L
Sbjct: 477 PGIGKTTTATLVVKELGFDAVEFNASDTRSKRLLK----------EEVSSLLGNKTLYGY 526
Query: 466 MD---RSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
+ ++ K VLIMDEVDGM+ DRGG+ +LIA IK S +PIIC+CNDR K++SL
Sbjct: 527 CNGQSQAVSKKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSVPIICMCNDRNHPKIRSL 586
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
VNYC DLRF++PR ++I R+M I E +++ +EE+ N DIR +IN + +S
Sbjct: 587 VNYCYDLRFQRPRIEQIKGRIMSICFKEKMKIPPAKVEEIIAATNNDIRQSINHIALLSA 646
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLL 640
S ++KD + P+ V K+F K + ++++ DL D + PL
Sbjct: 647 SGEGASPTQKAGVDKVASKDLKLGPWEVVRKVFTQEEHKHMNLNDKCDLFFHDYSMGPLF 706
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCII 700
+Q NY+ P RD ++ +A A+++S GD+ +IR N W L + ++ S ++
Sbjct: 707 VQHNYLQVTP-QGHRDTY--MAKVAATADALSLGDLVEKRIRANSAWSLLPTQAIFSSVL 763
Query: 701 PAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTL 759
P M G G+ N F GWLGKNS K RL ++LH H + + S+L ++
Sbjct: 764 PGEQMCGHF----SGQIN---FPGWLGKNSRSNKRARLAQELHDHTRICTSGSRL---SI 813
Query: 760 RLDYFSLLLKQLTEPL 775
RLDY LL + PL
Sbjct: 814 RLDYAPYLLNNIVRPL 829
>gi|241111852|ref|XP_002399407.1| replication factor C large subunit, putative [Ixodes scapularis]
gi|215492969|gb|EEC02610.1| replication factor C large subunit, putative [Ixodes scapularis]
Length = 706
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 229/636 (36%), Positives = 329/636 (51%), Gaps = 83/636 (13%)
Query: 200 GAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTK 259
G+P CL G+T VI+G L+ +ER++ L++R G +VT SVS+ T YL+ D AK K
Sbjct: 1 GSPGCLKGVTLVITGVLECIERDDTRALLERCGAKVTQSVSRNTTYLVAGRDSGPAKLRK 60
Query: 260 AKELGTPFLTEDGLFDMIRA-------------SKPMKALAQ-------AESKK------ 293
A+E L EDG F++I + ++P AL A SKK
Sbjct: 61 AEECKVKILDEDGFFELIESRSGGGSSTKKGGGAEPEGALPAEAAPEQGAPSKKRKAEAD 120
Query: 294 ------SVEKVAASLPKKSPQNIEAKSTS------APKA--------PIERMKTVASPAK 333
+ +V+ S P+K+ + A STS P A + + V SP
Sbjct: 121 DEPAETKIPRVSVSPPEKADVDAAAASTSKTSPARLPSAVRFKPSLITLTCWEQVTSPLF 180
Query: 334 RKGQNIQQSSLTWTEKYRPKTPNEIVGNQ---QLVKQLHTWLAHWNEKFLDTGTKRNGKK 390
R QQ + W ++YRP+T +I+G Q +L WL +W++ G KR K
Sbjct: 181 R-FHGCQQGQM-WVDRYRPQTTKQIIGQQGDKSNCHKLRLWLQNWHKS--RAGPKRPPPK 236
Query: 391 ----QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIG 446
D SA KAA+LSG+PG+GKTT A LV + GF +E+NASD+R K K
Sbjct: 237 WGGGGGDGSAFKAALLSGAPGVGKTTTANLVAREAGFSVLELNASDTRSKKSLK------ 290
Query: 447 GSNANSIKELVSNEALS-ANMDRSKH---PKTVLIMDEVDGMSAG-DRGGIADLIASIKI 501
+ EL+ N+ L+ A R++ K +LIMDEVDGM+ DRGG+ +LIA IK
Sbjct: 291 ----QEVAELLGNQTLTGATTARAREGLSSKHMLIMDEVDGMAGNQDRGGVQELIALIKS 346
Query: 502 SKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEEL 561
++IPI+CICNDR K++SLVNYC DLRF +P+ ++I +M IA EGL V ++E+
Sbjct: 347 TRIPIVCICNDRSHPKMRSLVNYCFDLRFYRPQVKQIQAAMMSIACKEGLSVTPAVVQEI 406
Query: 562 ADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGF--NGG 619
N D+R ++ L + I + ++ KD + PF V K+ G
Sbjct: 407 IMASNQDVRQVLHNLSLWTARTKGISSEQVKADTGKGTKDIRLGPFDVVRKILSSAEGGQ 466
Query: 620 KLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNV 679
L + E+ L D +VP+ +Q+NYI+ +P +A D+ + L L+ A+ESI GD+
Sbjct: 467 SLSLGEKSALFFHDYSMVPMFVQDNYIHVQPLAAQGDKKRHLRLLVEASESICQGDLIER 526
Query: 680 QIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLL 739
QIR W L + S +IP LM GQ R F W GKNS++GK RLL
Sbjct: 527 QIRSCGSWSLLPMQAFFSSVIPGELMRGQL-------REMVSFPAWFGKNSSLGKRQRLL 579
Query: 740 EDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
++L+ H+ +R S R L +DY S LL LT+PL
Sbjct: 580 QELYM-HMHTRVSA-NRTQLHMDYLSPLLHSLTQPL 613
>gi|428185128|gb|EKX53981.1| replication factor C subunit 1 [Guillardia theta CCMP2712]
Length = 1046
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 235/630 (37%), Positives = 342/630 (54%), Gaps = 65/630 (10%)
Query: 185 ERKDPPHKGEKE--VPE--GAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVS 240
+++D P+K KE + E GAP+CL G TFVI+G LD LER+EA DLIK +GGRVTGSVS
Sbjct: 291 QKQDVPNKHLKEERIDENRGAPNCLSGKTFVITGVLDCLERDEASDLIKGYGGRVTGSVS 350
Query: 241 KKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA---SKPMKALAQA-ESKKSVE 296
KKT++LLC E+ +K KA+EL P + E GLF +I++ S P A++ E+K V
Sbjct: 351 KKTDFLLCGEEPGDSKVKKAEELKVPKIDEAGLFQLIKSTATSAPTNEAAKSPEAKVPVT 410
Query: 297 KVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLT--WTEKYRPKT 354
K + PKKS + K T+ K + +S K ++ T W +K+ P
Sbjct: 411 KAS---PKKSAFTAK-KDTAVKKETDSSVDIKSSSTKSTKTDVSGEGGTSLWVDKHSPAK 466
Query: 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAA 414
++VGN + L WL +W + +G R KK++ ++A +++G PG+GKT+ A
Sbjct: 467 CEDLVGNGDKRETLRRWLQNWGKSEAVSGQGR-AKKEDADMNKRAVLITGPPGIGKTSTA 525
Query: 415 KLVCQMLGFQAIEVNASDSRGKA--DAKISKGIGGSNANSIKELVSNEALSANMDRSKHP 472
+LV L + +E+NASD R KA D K+S L SN +LS +S+
Sbjct: 526 RLVITSLKYDVVEMNASDVRNKAGIDEKVS------------SLTSNHSLSGYFSKSEQS 573
Query: 473 K-----TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSD 527
K T LIMDEVDGMS GDRGG+ +LI IK +++PI+CI ND Y +K+ SL N+C D
Sbjct: 574 KIGNRRTCLIMDEVDGMSGGDRGGVQELINLIKNTRVPIVCIANDYYDKKISSLKNWCLD 633
Query: 528 LRFRKPRKQEIAKRLMQIANAEGLEVN-----EIALEELADRVNGDIRMAINQLQYMSLS 582
LRF+KP K + KRL QIA EG ++ + ALE+L + NGDIR IN LQ +
Sbjct: 634 LRFQKPGKNLVVKRLEQIAREEGFQIKDRNVFQNALEKLVEGANGDIRHVINSLQTWRMR 693
Query: 583 LSVIKYDDI-------RQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPD 635
+ + + D+ +++ + A D+S +D N + +R+D+ D D
Sbjct: 694 SNELNFADVAEMQKGGKEQSVVQASIFDVSTEWFLDSQKRNNA---TLGDRLDMFFFDAD 750
Query: 636 LVPLLIQENYINYRPSSAGRDEVKR------LSLIARAAESISDGDIFNVQIRRNQQWQL 689
L+PLL+QENY+ R +S DEVK+ + ++RAAESISD D+ N IR+NQ W L
Sbjct: 751 LIPLLVQENYLKTR-TSLPPDEVKKNPEFHLMERMSRAAESISDSDLINSDIRKNQHWSL 809
Query: 690 SQSSSLASCIIPAALMHGQRETLEQGE----RNFNRFGGWLGKNSTMGKNLRLLEDLHFH 745
+ + + G E ++F + LG ST+ K RLL D+
Sbjct: 810 LPCYGTLATVKAGFPIRGIPPAFYSNELWRKQSFTKI---LGHTSTVNKKNRLLSDI--Q 864
Query: 746 HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
KS + + DY +L +L +PL
Sbjct: 865 RCMKLKSSANKTDIACDYLGVLRNRLVKPL 894
>gi|242011918|ref|XP_002426690.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212510861|gb|EEB13952.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 842
Score = 343 bits (879), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 233/720 (32%), Positives = 374/720 (51%), Gaps = 58/720 (8%)
Query: 86 RSSPLKKFHKADDDDDDFVPPSVKKNSVGATPSKKLKSGSGRAVAQKSVDIDDDEEEDVK 145
R+ L F +D+D + K +S TP K+ S +I D+++
Sbjct: 9 RNLLLTSFFNTNDEDKNCELKPGKIDSQSTTPKKEHGKSKKTKDNVSSNEIFDEKKMGKI 68
Query: 146 KTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCL 205
ES + + + + G S + + + + +R P + K +P+G +CL
Sbjct: 69 SEESSVITKKQEKNGSNTS----IVVSKKQNSAAYQKYLQRSGPKNPNSKTIPKGTSNCL 124
Query: 206 GGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGT 265
LTFVI+G LDSLE+++A +LI+++GGRVT VSKKT++++ E+ +K +KA++ T
Sbjct: 125 QNLTFVITGILDSLEKKKAVELIQKYGGRVTTQVSKKTDFIVVGEEPGESKLSKAEKFCT 184
Query: 266 PFLTEDGLFDMI--------RASKPMKALAQAESKKSVEK-VAASLPKKSPQNIEAKSTS 316
+ ED L +I SKP++ Q S S++ + + + +++ KS
Sbjct: 185 KKINEDELLALITERSNFKQEESKPIEKTEQIISNSSMKSSINENKKMNTSKSVMVKSNQ 244
Query: 317 APKAPIERMKTVASPAKRKG----QNIQQSSLTWTEKYRPKTPNEIVGN---QQLVKQLH 369
+ + T + + K N + S + W EKY+PK+ I+G + VK+L
Sbjct: 245 FDDLSLTGVTTKSEASLIKNDDCKNNFENSDILWVEKYKPKSTKAIIGQGGEKSNVKKLT 304
Query: 370 TWLAHWNEKFLDTGTKRNGK--------KQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421
WL +W+ L+ TK + K +D S KAA+LSG PG+GKTT+A L+CQ L
Sbjct: 305 YWLQNWH---LNHSTKNDKKLTKPAPWNTNDDGSYFKAALLSGPPGVGKTTSAYLICQEL 361
Query: 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMD--RSKHPKTVLIMD 479
GF +E NASD+R K + + +L+++++L D RS K VL+MD
Sbjct: 362 GFDIVEFNASDTRSKRLLQ----------EEVSDLLTSKSLQGYFDGNRSTFKKQVLLMD 411
Query: 480 EVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEI 538
EVDGMS DRGG+ +LI IK +KIPII ICNDR K++SLVNYC D+RF++P ++I
Sbjct: 412 EVDGMSGNEDRGGVQELIQLIKQTKIPIIGICNDRNHPKMRSLVNYCFDIRFQRPPIKQI 471
Query: 539 AKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSS 598
++ I E + ++ +LEEL N D+R +++L ++ + +D R+
Sbjct: 472 KAAMLSICFKEKINISGDSLEELIVSSNHDLRQVLHRLSLLTFVEKSLSEEDARKNSSDG 531
Query: 599 AKDEDISPFTAVDKLF-GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDE 657
K +++P+ V K+F + K ++E++DL D L PL +Q+ YI+ +P A E
Sbjct: 532 KKPLNLNPWDVVRKVFSASDNEKFNLNEKMDLFFQDYSLGPLFVQDAYIHVKPKKARNSE 591
Query: 658 VKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGER 717
++ +SLI++AA+SI GD+ IR W L + L + I P M G QG+
Sbjct: 592 LEVMSLISKAADSICYGDVVEKTIRSKNSWNLLPAQGLFASICPGYYMAGHF----QGKI 647
Query: 718 NFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDT--LRLDYFSLLLKQLTEPL 775
F W+GKNS K R+L++LH S +K+ D + LDY LL + +PL
Sbjct: 648 ---EFPAWMGKNSKARKLSRILQELH----TSLCTKILGDVQAINLDYLKLLKTIIVKPL 700
>gi|62472391|ref|NP_001014605.1| germ line transcription factor 1, isoform B [Drosophila
melanogaster]
gi|21483228|gb|AAM52589.1| AT18625p [Drosophila melanogaster]
gi|61679311|gb|AAX52937.1| germ line transcription factor 1, isoform B [Drosophila
melanogaster]
Length = 1008
Score = 342 bits (876), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 233/679 (34%), Positives = 338/679 (49%), Gaps = 114/679 (16%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + R + G KE+P+G+PDCL GLTFV++G L+S+EREEAE +IK +GG+V V
Sbjct: 212 YQKYKNRSSCLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVV 271
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR--------------------- 278
KK YL+ E+ K A+EL P L+EDGLFD+IR
Sbjct: 272 GKKLKYLVVGEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGIAKQVKEEKKSPKKEHS 331
Query: 279 ----ASKPMKALAQAESKKSVEKVAASLPKK-------------SPQNIEAKSTSAP--- 318
K +K ++ KK E +K SP+ + K P
Sbjct: 332 SEEKGKKEVKTSRRSSDKKEKEATKLKYGEKHDIAKHKVKEEHTSPKETKDKLNDVPAVT 391
Query: 319 ----KAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGN------------- 361
K P + + SP + + + W +K++P + EIVG
Sbjct: 392 LKVKKEPSSQKEHPPSPRTADLKTLDVVGMAWVDKHKPTSIKEIVGQAGAASNVTNHNLK 451
Query: 362 ----QQLVKQLH--------TWLAHWNEKFLDTGTKRNGK-----KQNDASAEKAAILSG 404
Q+ VK LH WL+ W G K+ + K +D S KAA+LSG
Sbjct: 452 LKAKQERVKVLHYFNFPRLMNWLSKWYVNH--DGNKKPQRPNPWAKNDDGSFYKAALLSG 509
Query: 405 SPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA 464
PG+GKTT A LV + LGF A+E NASD+R K K + + L+SN++LS
Sbjct: 510 PPGIGKTTTATLVVKELGFDAVEFNASDTRSKRLLK----------DEVSTLLSNKSLSG 559
Query: 465 NMD---RSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
++ K VLIMDEVDGM+ DRGG+ +LIA IK S IPIIC+CNDR K++S
Sbjct: 560 YFTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRS 619
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
LVNYC DLRF++PR ++I ++M I E ++++ +EE+ N DIR +IN + +S
Sbjct: 620 LVNYCYDLRFQRPRLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALLS 679
Query: 581 LSLSVIKYDDIRQR--LLSSAKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLV 637
+D Q+ + KD + P+ V K+F + K + ++ DL D L
Sbjct: 680 AK------EDASQKSGQQVATKDLKLGPWEVVRKVFTADEHKHMSFADKSDLFFHDYSLA 733
Query: 638 PLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLAS 697
PL +Q+NY+ P +D L+ +A A+++S GD+ +IR N W L + + S
Sbjct: 734 PLFVQQNYLQVLPQGNKKD---VLAKVAATADALSLGDLVEKRIRANSAWSLLPTQAFFS 790
Query: 698 CIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGR 756
++P M G G+ N F GWLGKNS GK RL ++LH H + + S+L
Sbjct: 791 SVLPGEHMCGHF----TGQIN---FPGWLGKNSKSGKRARLAQELHDHTRVCTSGSRL-- 841
Query: 757 DTLRLDYFSLLLKQLTEPL 775
++RLDY LL + PL
Sbjct: 842 -SVRLDYAPFLLDNIVRPL 859
>gi|194746572|ref|XP_001955754.1| GF18917 [Drosophila ananassae]
gi|190628791|gb|EDV44315.1| GF18917 [Drosophila ananassae]
Length = 982
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 230/654 (35%), Positives = 344/654 (52%), Gaps = 89/654 (13%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + R + G KE+P+G P+CL G+TF+++G L+S+EREEAE +IK +GGRV V
Sbjct: 225 YQKYKNRSSCLNPGSKEIPKGTPNCLSGITFLVTGVLESMEREEAESVIKEYGGRVMTVV 284
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA----SKPMKALAQA----ES 291
KK YL+ E+ K A+EL P L+EDGLFD+IR S P+K + +S
Sbjct: 285 GKKLQYLVVGEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGLSHPVKEEKKTPKKEQS 344
Query: 292 KKSV--EKVAASLPKKSPQNI----EAKSTS---------APKA---------PIERMKT 327
+ V E +SL ++ P E K T+ +PKA P +K
Sbjct: 345 SRDVKRENGNSSLKEEKPSTKSKVKEEKETAKHKIKEEHVSPKAKKTKHEEPVPAVTLKV 404
Query: 328 VASPAKRKGQ---NIQQS-------SLTWTEKYRPKTPNEIVGNQQL---VKQLHTWLAH 374
P+ ++ + N+ + W +K++P EIVG V +L WL+
Sbjct: 405 KKEPSSQEQKVSVNVAADPAPQDLLGMAWVDKHKPTNIKEIVGQAGAASNVTKLMNWLSK 464
Query: 375 WNEKFLDTGTKRNGKKQN------DASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428
W +++ K+ ++ N D S KAA+LSG PG+GKTT A LV + LGF A+E
Sbjct: 465 W---YVNHDGKKKPQRPNPYAKNDDGSYFKAALLSGPPGIGKTTTATLVAKELGFDAVEF 521
Query: 429 NASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMD---RSKHPKTVLIMDEVDGMS 485
NASD+R K K + L+ N++L+ + ++ K VL+MDEVDGM+
Sbjct: 522 NASDTRSKRLLK----------EEVSTLLGNKSLAGYFNGQGQAVSRKHVLLMDEVDGMA 571
Query: 486 AG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544
DRGG+ +LIA IK S IPIIC+CNDR K++SLVNYC DLRF++PR ++I ++M
Sbjct: 572 GNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVNYCYDLRFQRPRLEQIKGKIMS 631
Query: 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI-RQRLLSSAKDED 603
I E ++++ +EE+ N DIR +IN + +S K D + + + KD
Sbjct: 632 ICFKEKVKISPAKVEEIIAATNNDIRQSINHISLLS-----AKEDSVGKAGQQVATKDLK 686
Query: 604 ISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLS 662
+ P+ V K+F K + + ++ DL D L PL +Q+NY+ P +D L+
Sbjct: 687 LGPWEVVRKVFTAEEHKHMSLADKSDLFFHDYSLAPLFVQQNYLQVTPQGNKKD---VLA 743
Query: 663 LIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRF 722
+A A+++S GD+ + +IR N W L + + S ++P M G G+ N F
Sbjct: 744 KVAATADALSLGDLIDKKIRSNNAWSLLPTQAFFSSVLPGEHMCGYF----TGQIN---F 796
Query: 723 GGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG-RDTLRLDYFSLLLKQLTEPL 775
GWLGKNS GK RL ++LH H +R G R ++RLDY LL + PL
Sbjct: 797 PGWLGKNSRAGKRARLAQELHDH---TRSCTSGSRLSVRLDYAPFLLDNIVRPL 847
>gi|195497183|ref|XP_002095995.1| GE25440 [Drosophila yakuba]
gi|194182096|gb|EDW95707.1| GE25440 [Drosophila yakuba]
Length = 986
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 226/668 (33%), Positives = 339/668 (50%), Gaps = 103/668 (15%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + R + G KE+P+G+ DCL GLTFV++G L+S+EREEAE +IK +GGRV V
Sbjct: 211 YQKYKNRSSCLNPGSKEIPKGSTDCLSGLTFVVTGVLESMEREEAESVIKEYGGRVMTVV 270
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM--------KALAQAES 291
KK YL+ E+ K A+EL P L+EDGLFD+IR M K+ + +S
Sbjct: 271 GKKLKYLVIGEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGMAKQVKEEKKSPKKEQS 330
Query: 292 KKSVEKVAASL-------------------------------------PKKSPQNIEAKS 314
+ EKV S K+ ++ A +
Sbjct: 331 SEETEKVKTSRRSHDKKEKEKEVTKHRIGEMHDIAKHKVKKEHISSKEMKEKLNDVPAVT 390
Query: 315 TSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGN------------- 361
K P + + +P + + + W +K++P + EIVG
Sbjct: 391 LKVKKEPSSQTENAPTPRTAEPKTRDVVGMAWVDKHKPTSIREIVGQAGAASNVTKRVIS 450
Query: 362 -QQLVKQLHTWLAHWNEKFLDTGTKRNGK-----KQNDASAEKAAILSGSPGMGKTTAAK 415
+ ++ L WL+ W G K++ + K +D S KAA+LSG PG+GKTT A
Sbjct: 451 FKDIILMLTNWLSKWYVNH--DGNKKSQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTAT 508
Query: 416 LVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMD---RSKHP 472
LV + LGF A+E NASD+R K K + + L+SN++LS ++
Sbjct: 509 LVVKELGFDAVEFNASDTRSKRLLK----------DEVSTLLSNKSLSGYFTGNGQAVSR 558
Query: 473 KTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFR 531
K VLIMDEVDGM+ DRGG+ +LIA IK S IPIIC+CNDR K++SLVNYC DLRF+
Sbjct: 559 KHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVNYCFDLRFQ 618
Query: 532 KPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
+PR ++I ++M I E ++++ +EE+ N DIR +IN + +S +D
Sbjct: 619 RPRLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALLSAK------EDA 672
Query: 592 RQR--LLSSAKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINY 648
Q+ + KD + P+ V K+F + K + + ++ DL D L PL +Q+N++
Sbjct: 673 SQKSGQQVATKDLKLGPWEVVRKVFTADEHKHMTLADKSDLFFHDYSLAPLFVQQNFLQV 732
Query: 649 RPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQ 708
P +D L+ +A A+++S GD+ + +IR N W L + + S ++P M G
Sbjct: 733 LPQGNKKD---LLAKVATTADALSLGDLVDKRIRANSAWSLLPTQAFFSSVLPGEHMCGH 789
Query: 709 RETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLL 767
G+ N F GWLGKNS GK RL ++LH H + + S+L ++RLDY L
Sbjct: 790 F----TGQIN---FPGWLGKNSKAGKRARLAQELHDHTRVCTSGSRL---SVRLDYAPFL 839
Query: 768 LKQLTEPL 775
L + PL
Sbjct: 840 LDNIVRPL 847
>gi|384245951|gb|EIE19443.1| RFC1-domain-containing protein, partial [Coccomyxa subellipsoidea
C-169]
Length = 480
Score = 339 bits (870), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 183/431 (42%), Positives = 260/431 (60%), Gaps = 12/431 (2%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EK++P+ +++GN L+ + WL +W + + +KA ILSG
Sbjct: 2 WVEKHKPQRSADLIGNPGLIGTIREWLQNWYTPAWELSCQFTCATY---LTKKAIILSGP 58
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT++A ++ + LGF +EVNASD+R KAD G+ G AN+IKEL +N AL++
Sbjct: 59 PGIGKTSSALIIARELGFIPVEVNASDTRNKADKSAKGGMAGKLANNIKELANNRALTSG 118
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
+ + K LIMDEVDGMSAGDRGG+ DLI +IK +K+PIICICND+Y+QKLKSL N+C
Sbjct: 119 A-QGEEKKLCLIMDEVDGMSAGDRGGVPDLILTIKAAKLPIICICNDKYNQKLKSLRNHC 177
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV 585
+L FRKP Q+I+KRL+QI EGL+VNE L L + N DIR+ + QLQ + L
Sbjct: 178 LELDFRKPTSQQISKRLIQICQKEGLQVNESTLAALVESSNADIRLMLGQLQMIRLRKRS 237
Query: 586 IKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENY 645
+ YD+ + + KD D+SPF A KL K+ +++RIDL D DLVPLL+Q N
Sbjct: 238 LSYDEAK---MGGGKDADMSPFEAGRKLLSLESEKMSLNDRIDLVFQDADLVPLLVQLNC 294
Query: 646 -INYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAAL 704
+ + SA ++ + ++A+AA+++S GD+ N ++R+ W L ++ + PA
Sbjct: 295 GLELQMCSA----LECVQVLAKAADALSAGDLVNRKVRQYGSWGLMPFAAAIGSVYPATY 350
Query: 705 MHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYF 764
M G RET E NF RF WLG NS+ GK RL+ +LH +S R LR Y
Sbjct: 351 MRGGRETFSSYENNFPRFTAWLGNNSSTGKQRRLMGELHTRMTSSGHVASDRTGLRTAYL 410
Query: 765 SLLLKQLTEPL 775
L L++PL
Sbjct: 411 PTLRYALSKPL 421
>gi|322778907|gb|EFZ09323.1| hypothetical protein SINV_15414 [Solenopsis invicta]
Length = 1027
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 217/624 (34%), Positives = 329/624 (52%), Gaps = 59/624 (9%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
++ G ++P G KE+P GA +CL G++F+I+G LDSLER EAEDLI+++ GR +V
Sbjct: 293 YLQRGGARNP---GSKEIPTGATNCLAGISFLITGVLDSLERNEAEDLIRKYSGRTVNTV 349
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA-----------------SKP 282
S K NY++ ++ AK TKA LG ++ED L +MIR S
Sbjct: 350 SSKVNYVIVGDEAGPAKLTKANSLGIKQISEDDLLEMIRTRPEGKAKDIKPIVTKTKSNV 409
Query: 283 MKALAQAESKK--SVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQ 340
+K ++ ES K S+ K PKK + + + +P+ + S ++ +I
Sbjct: 410 IKTFSEPESVKLPSLNKELLVSPKKIKTSQSSPVKTETSSPVSKQALDTSNTEQIITSIG 469
Query: 341 QSSLTWTEKYRPKTPNEIVGNQ---QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE 397
L EKYRPKT +IVG Q L+ WL W++ D K KQ +
Sbjct: 470 SEPL--VEKYRPKTMKQIVGQQGDKSCAHNLYIWLRDWHKNRQDPKVKNGTAKQTHGQSF 527
Query: 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
KAA+LSG PG+GKTT ++VC+ LG+ +E NASD+R K K + I G L+
Sbjct: 528 KAALLSGPPGVGKTTTVQVVCKELGYDLLEFNASDTRNKTLLK--EAISG--------LL 577
Query: 458 SNEALSANMDRSKH---PKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDR 513
SN + + +K K VL+MDEVDGM+ DRGG+ +L+ IK +++PIICICNDR
Sbjct: 578 SNTTMKDYVTGTKQKITSKHVLLMDEVDGMAGNEDRGGLQELVGLIKHTEVPIICICNDR 637
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
++ K+K++ + DL++ K R ++I + + E ++++ L+ L + N DIR I
Sbjct: 638 FNTKVKTISTHSYDLKYSKLRVEQIRSSMKSLCFKENIKISTEDLDRLIESTNHDIRQVI 697
Query: 574 NQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMS 632
N L+++S S ++ D + +S KD + PF K F K + ++++I L +
Sbjct: 698 NHLEFLSSQTSHVETTDKK----NSNKDFKLGPFDVTKKAFNAEEQKNMNLNDKIGLYFN 753
Query: 633 DPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQS 692
D ++ PL IQENY+ R + RL IA AA+SIS GD+ +R N W L
Sbjct: 754 DYNIAPLFIQENYLGVRLFQMSPRQ--RLERIANAADSISQGDLIEKLMRSNMMWSLLPI 811
Query: 693 SSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRK 751
+ S +IPA+ M G E L RF W G+NS + RL+++L H LA+
Sbjct: 812 HACFSFVIPASEMSGSSEPLI-------RFPSWFGRNSKATRFNRLMQELTTHTRLATGA 864
Query: 752 SKLGRDTLRLDYFSLLLKQLTEPL 775
SK D L +DY + + +PL
Sbjct: 865 SK---DALNMDYLPHIRNAIIKPL 885
>gi|452824090|gb|EME31095.1| replication factor C subunit 1 [Galdieria sulphuraria]
Length = 758
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 223/594 (37%), Positives = 311/594 (52%), Gaps = 72/594 (12%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
PP+KG+K VP G+P+ L GLTF I+G LDSLEREE DLI+ GGRV S SK N+ +
Sbjct: 83 PPNKGKKAVPTGSPESLQGLTFCITGVLDSLEREECTDLIRSLGGRVVSSPSKSVNFAVV 142
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKAL-AQAESKKSVEKVAASLPKKSP 307
+ +K K L + EDGLFD+IRA Q E+K +E+
Sbjct: 143 GLEPGESKMAKIASLKIQVIDEDGLFDLIRARSTANIWKGQVETKTKLEE---------- 192
Query: 308 QNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLT---WTEKYRPKTPNEIVGNQQL 364
T K I+ NI QS+ WT KY P +E+ N
Sbjct: 193 -------TKQKKPTID-------------NNIAQSATCSELWTYKYAPCDLSELCANPGA 232
Query: 365 VKQLHTWLAHWNEKFLDT-GTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423
+K L WL +W L G+K GK S+ KA +LSG PG+GKTTAA LV + LG+
Sbjct: 233 IKSLKEWLVNWKAASLSQEGSKNKGK-----SSPKAVLLSGPPGIGKTTAALLVSKELGY 287
Query: 424 QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG 483
+E NASD+R +A ++++ +++N+ L+ + K +V+IMDEVDG
Sbjct: 288 FPMEFNASDTRNRAIV----------SSTVGSVINNQTLN-QFGKDKTTSSVIIMDEVDG 336
Query: 484 MSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLM 543
MSAGDRGGI +LI IK + +PI+CICND S K++SL NYC L++R+P ++ RL+
Sbjct: 337 MSAGDRGGIQELIQLIKKTSVPIVCICNDDSSVKVRSLANYCLKLKWRRPLASQLRSRLL 396
Query: 544 QIANAEGLE-VNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD- 601
+I EG E V+ LE++ + +GD+R +N LQ + Y D+ +R+ K
Sbjct: 397 EICKKEGFENVDTQTLEKIVESCHGDMRQILNLLQSWRSHSRNLTYSDVLERMKQDGKTY 456
Query: 602 EDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRL 661
E++S F V L F+ G+ + R+D DPDL+PL++ ENYI R +S ++K+L
Sbjct: 457 EEMSIFELVKSL--FSPGEW-LSRRLDNYFMDPDLMPLMVAENYIISREAS----DLKKL 509
Query: 662 SLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNR 721
A+ SI++GDIFN IRR Q W L +L S I P L+ G +
Sbjct: 510 ---VEASTSIAEGDIFNDLIRRQQAWNLMPVQALFSGIYPGQLLQGPF-------GDMIH 559
Query: 722 FGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F WLGKNST KN RL +L S L+Y L L+ PL
Sbjct: 560 FPSWLGKNSTRSKNKRLTMELQMR--MSNNISGSFHAFLLEYLPCLRSILSAPL 611
>gi|195396041|ref|XP_002056641.1| GJ11052 [Drosophila virilis]
gi|194143350|gb|EDW59753.1| GJ11052 [Drosophila virilis]
Length = 964
Score = 336 bits (861), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 234/651 (35%), Positives = 339/651 (52%), Gaps = 84/651 (12%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + R + G KE+P+GAPDCL GLTF+++G L+S+ER+EA +IK GGRV V
Sbjct: 199 YQKYKNRSSCLNPGSKEIPKGAPDCLKGLTFLVTGILESMERDEAASVIKGFGGRVMTVV 258
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR---ASKPMKALAQAESK---- 292
KK NYL+ E+ K +A+E ++EDGLFD+IR KP ++ SK
Sbjct: 259 GKKLNYLVVGEEAGPKKLAQAEEHNVTIISEDGLFDLIRERSGEKPSGKEEKSSSKIKHE 318
Query: 293 ---KSVEKVAASLPKKSPQNIE----AKSTSAPKAPIERMKTVAS----------PAKRK 335
KS K+ +KS IE KS S K + K+ + P R
Sbjct: 319 QEEKSSLKIKHEREEKSSSKIEHEQEEKSNSKIKPEPGQTKSSNTSEGEHALKVKPQPRI 378
Query: 336 GQNIQQ----------------SSLTWTEKYRPKTPNEIVGNQ---QLVKQLHTWLAHWN 376
I++ S++ W +KY+P + EIVG+ V +L WL+ W
Sbjct: 379 SPKIKKEPNNNVDAAKTEEDISSNMAWVDKYKPSSIKEIVGSAGPGSNVNKLMNWLSKW- 437
Query: 377 EKFLDTGTKRNGKKQN------DASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
+++ K ++ N D S KAA+LSG PG+GKTT A LVCQ LGF A+E NA
Sbjct: 438 --YVNHDGKTKPQRPNPWAKNDDGSFFKAALLSGPPGIGKTTTATLVCQELGFDAVEFNA 495
Query: 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANM---DRSKHPKTVLIMDEVDGMSAG 487
SD+R K K + L+ N++L+ + ++ K VLIMDEVDGM+
Sbjct: 496 SDTRSKRLLK----------EEVSSLLGNKSLAGYVHGQSQAVSKKHVLIMDEVDGMAGN 545
Query: 488 -DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIA 546
DRGG+ +LIA IK S +PIIC+CNDR K++SLVNYC DLRF++PR ++I R+M I
Sbjct: 546 EDRGGMQELIALIKDSSVPIICMCNDRNHPKIRSLVNYCYDLRFQRPRAEQIKGRIMSIC 605
Query: 547 NAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISP 606
E L++ LEE+ N DIR IN + +S + + +Q +AKD + P
Sbjct: 606 FKEKLKIPPAKLEEIIAATNNDIRQTINHIALLSAGEQLPQATTNQQ---VAAKDLKLGP 662
Query: 607 FTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIA 665
+ V K+F + K + + ++ DL D L PL +Q+NY+ P R+EV A
Sbjct: 663 WEVVRKVFTADEHKHMTIYDKCDLFFHDYSLAPLFVQQNYLQVLP-QGNRNEVLAKVAAA 721
Query: 666 RAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGW 725
A S+ GD+ + +IR N W L + ++ S ++P M G G+ N F GW
Sbjct: 722 ADALSL--GDMVDKRIRANSAWSLLPTQAVFSSLLPGEYMCGHF----TGQIN---FPGW 772
Query: 726 LGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
LGKNS K RL ++LH H + + S+L ++RL+Y LL + PL
Sbjct: 773 LGKNSRSSKRSRLAQELHDHTRVCTSGSRL---SVRLEYAPHLLANIVRPL 820
>gi|145343745|ref|XP_001416472.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576697|gb|ABO94765.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 498
Score = 334 bits (857), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 183/437 (41%), Positives = 273/437 (62%), Gaps = 18/437 (4%)
Query: 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK 398
I+ S+ WT+K+ P+ ++VGN + L TWL++W G + GK + S K
Sbjct: 7 IENSANLWTDKFSPRVLADLVGNSSAIATLRTWLSNW------PGNQATGKA-SKVSTRK 59
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
A ++SG+PG+GKTT+A L+C+ LGFQ + VNASDSRGK A +S GI G+ A++++E V+
Sbjct: 60 AILISGAPGIGKTTSAILICRELGFQTMNVNASDSRGKTGA-VSDGIAGTLASTVREFVT 118
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
N + +D + KT LIMDEVDGM+ GDRGGI++LI IK ++IPIICICNDRYSQKL
Sbjct: 119 NRNIG--IDGLRSTKTALIMDEVDGMAGGDRGGISELIEVIKHTRIPIICICNDRYSQKL 176
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
K+L NYC DL F++P K ++ K L QI ++ L+V+ A++ L + N D+R +INQLQ
Sbjct: 177 KTLANYCVDLPFQRPNKLQLRKYLNQIVASQRLDVDSDAVDALIEANNNDLRSSINQLQL 236
Query: 579 MSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVP 638
+S ++I S KD S F A+D LF + K +DER++L D++P
Sbjct: 237 WGMSSKHHGRNEI------SKKDVATSVFQAIDVLFRPSPLK-TLDERLNLVFQHSDMIP 289
Query: 639 LLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASC 698
L +QENY RP + +E++R+ +A A+ +++GD+F I + Q W + +++ SC
Sbjct: 290 LFVQENYACMRPRDS-TNELQRIVHVAAASSRVAEGDVFATTINKTQNWTMMPPANIVSC 348
Query: 699 IIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDT 758
++P + + G RET Q ER+ +RF LGK S+ K+ RLL +L+ H +S +S +
Sbjct: 349 VLPTSAVRGSRETFGQAERHTHRFPSLLGKLSSKSKSQRLLSELYQHFRSSGRSCSTQLE 408
Query: 759 LRLDYFSLLLKQLTEPL 775
L Y SL + LT PL
Sbjct: 409 FCLWYASLTKRLLTRPL 425
>gi|328770979|gb|EGF81020.1| hypothetical protein BATDEDRAFT_653 [Batrachochytrium dendrobatidis
JAM81]
Length = 696
Score = 330 bits (847), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 211/604 (34%), Positives = 324/604 (53%), Gaps = 68/604 (11%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P + G + +P GA +CL GL FV +G + S RE+A DL+KR+GGRV G+ S KT+Y++
Sbjct: 5 PRNSGSRPLPVGADNCLTGLAFVFTGEMPSFSREDATDLVKRYGGRVVGAPSSKTSYVVV 64
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQ 308
ED +K K ++L L ED ++I ++ S +V + LP S Q
Sbjct: 65 GEDPGESKLKKVRDLKLKVLDEDSFVNLISST------FNGASASTVTLASPLLPVHSAQ 118
Query: 309 NIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLT--WTEKYRPKTPNEIVGNQQLVK 366
+P + SS+T W +KY+P + +E++GN+ L++
Sbjct: 119 -------------------CTTP-------VLTSSMTPLWVDKYKPISYSEVIGNKGLIE 152
Query: 367 QLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426
+L WL +W E G ++ K +D++ +A +LSGSPG+GKTT+A LV ++ F +
Sbjct: 153 KLSKWLKNW-ESNRQYGFPKDVK--DDSATFRACLLSGSPGLGKTTSAHLVARLEDFDVV 209
Query: 427 EVNASDSRGKADAKISKG------IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDE 480
E NASD R K S G + G+ ++S+ +++ A N K VLIMDE
Sbjct: 210 EFNASDVRSKKALDESTGTVSIASLFGTASSSLSKVLGKSAAPVN---HKKRGRVLIMDE 266
Query: 481 VDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK 540
VDGMSAGDRGG A+LI+ IK +KIPIICICNDR S K++SL N+C DLRFR+P + I+
Sbjct: 267 VDGMSAGDRGGSAELISIIKQTKIPIICICNDRSSPKIRSLANHCFDLRFRRPDARMISA 326
Query: 541 RLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAK 600
R+ I EGL+++ + EL D + DIR +N L L+ + + YD+ + ++ K
Sbjct: 327 RVEMICKKEGLDISPNVIAELVDSTSADIRQILNILSTYKLTNNRLTYDEAKTLSANTRK 386
Query: 601 DEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPS------SA 653
+ +SPF + KL + L + IDL D +VPL++ ENY+N PS +
Sbjct: 387 NSTMSPFDIIGKLLSHGSYRNLSFGDMIDLYFHDYSMVPLMVHENYLNQIPSLSTELRAT 446
Query: 654 GRD-EVKRLSLIARAAESISDGDIF-NVQIRRNQQWQLSQSSSLASCIIPAALMHGQRET 711
G+ +++ + L++ AA+SIS GD+ +VQ + W L ++ S I P HG
Sbjct: 447 GKQLDLETVRLLSEAADSISMGDLVESVQ----RSWSLLPLHAVMSTIRPCFFAHG---- 498
Query: 712 LEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQL 771
+G +N F WLG+NS K R L ++ H ++ ++ + Y L + L
Sbjct: 499 --RGSLRYN-FASWLGQNSKQAKAQRFLREIQIH--MRLRTSADKNQVCQCYLPTLAQLL 553
Query: 772 TEPL 775
T PL
Sbjct: 554 TRPL 557
>gi|392574887|gb|EIW68022.1| hypothetical protein TREMEDRAFT_32699, partial [Tremella
mesenterica DSM 1558]
Length = 720
Score = 328 bits (842), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 209/604 (34%), Positives = 322/604 (53%), Gaps = 43/604 (7%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P G KE+PEG PDCL GLTFV +G L SL R+EA +L KR+ GRVTG+ S KT+Y++
Sbjct: 12 PKAPGSKEIPEGVPDCLAGLTFVFTGELTSLGRDEAIELAKRYSGRVTGAPSSKTSYVIV 71
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRA-------SKPMKALAQAESKKSVEKVAAS 301
E+ +K ++ P LTED D+IR K +KA + + K +A +
Sbjct: 72 GENAGKSKMDAIQKKNIPTLTEDEFLDLIRTRHGAELDEKQLKAQEKEQKKIEEAAMAMA 131
Query: 302 LPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGN 361
++ + + + +A PI SS WT KY P+T ++ GN
Sbjct: 132 AKEREEEKLRKRKEAAKAIPI-------------------SSQLWTTKYAPQTAKDLCGN 172
Query: 362 QQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421
+ + +L WL W++ F +G K+ GK+ +A ++SG PG+GKTT+A L+ +
Sbjct: 173 KAPIGRLLDWLKDWDKNF-KSGFKKPGKE--GLGIFRAVLISGPPGIGKTTSAHLMAKEA 229
Query: 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEV 481
G+ IE+NASD+R K + I ++ + + A + +D KT LIMDEV
Sbjct: 230 GYNPIELNASDARSKKLIEHHTNIDNASLDGFFQ--GAGAKTTVVDMKVDSKTCLIMDEV 287
Query: 482 DGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
DGMSAGDRGG+ L A IK ++IP+I ICND+ QK+K L+N + F++P E+ R
Sbjct: 288 DGMSAGDRGGVGALNALIKKTRIPMILICNDKSLQKMKPLINTTYGMPFKRPGPNEVRSR 347
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD 601
+M I E L++ +++L N DIR +N L L S + +D+ + L + K+
Sbjct: 348 IMSILYKEKLKIPTNVVDQLVQGANSDIRQVLNMLSTFKLGKSEMSFDEGKALLKVNEKN 407
Query: 602 EDISPFTAVDKL---FGF-NGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRD- 656
++PFT +DKL + F + + ++E+ +L D VPL +QE+Y+ P+ A ++
Sbjct: 408 TIMTPFTIIDKLTGPYAFSHTNRETLNEKAELYFHDFSFVPLFMQEHYLKTLPARASKED 467
Query: 657 ----EVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRET 711
++K L L+++AA+SISDGD+ + I ++Q W L + AS + PA+L++G
Sbjct: 468 GPLKDLKHLDLVSKAADSISDGDLIDRMIHGSEQHWSLLPIHAFASTVTPASLIYGSINK 527
Query: 712 LEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQL 771
G F WLG+NS GK R L D+ + R S R +R Y LL +
Sbjct: 528 PGYGGGFGPAFPQWLGQNSKQGKLSRQLTDIQI-RMRLRVSG-SRQEIREQYMPLLAGHI 585
Query: 772 TEPL 775
PL
Sbjct: 586 VSPL 589
>gi|402222111|gb|EJU02178.1| DNA replication factor C large subunit [Dacryopinax sp. DJM-731
SS1]
Length = 955
Score = 326 bits (835), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 214/601 (35%), Positives = 319/601 (53%), Gaps = 38/601 (6%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P + G KE+PEG P+CL GLTFV +G L SL REEA DL+ R+GGRVTGS S +T+Y++
Sbjct: 238 PLNPGSKEIPEGQPNCLAGLTFVFTGELSSLAREEAIDLVNRYGGRVTGSPSGRTSYVVI 297
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQ 308
D +K K+ L EDG D+IR K + ++K +E+ + K + +
Sbjct: 298 GTDAGASKLATIKKHNLATLDEDGFLDIIRTRK---GVLDEKTKAKLEQEERDIIKAA-K 353
Query: 309 NIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSL--TWTEKYRPKTPNEIVGNQQLVK 366
+E + A K S AK G + L WT +Y P+T NEI GN+ V+
Sbjct: 354 EMETREKEAAKQ---------SNAKLNGPGVTSQGLGQLWTTRYAPQTLNEICGNKAAVE 404
Query: 367 QLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426
+L WL W K L G + GK + +A ++SG PG+GKTT+A LV Q+ G+ I
Sbjct: 405 KLEKWLEDW-PKNLHQGFNKAGK--DGMGVYRAVLISGPPGIGKTTSAHLVAQVQGYTPI 461
Query: 427 EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA 486
EVNASD+R K S I + + ++ +A +D S ++VLIMDEVDGMS
Sbjct: 462 EVNASDARSKKLIMNSTNISNQSLDGWMHGGTDTTTAAGIDISG--RSVLIMDEVDGMSG 519
Query: 487 GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIA 546
DRGGI L IK ++IPIICI NDR QK+K L +L FRKP + I R+M I
Sbjct: 520 SDRGGIGALNQLIKKTRIPIICIANDRTLQKMKPLQGTTYNLPFRKPDAKAIRSRIMSIL 579
Query: 547 NAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISP 606
E +++ +++L V DIR +N L LS + + +D+ +Q + K ++P
Sbjct: 580 FKEKMKIPPNVVDQLVTGVQCDIRQVLNMLSTWKLSQTNMDFDEAKQLASLNEKYSTMTP 639
Query: 607 FTAVDKLFG---FNG-GKLRMDERIDLSMSDPDLVPLLIQENYINYRP-----SSAGRDE 657
+ ++KLFG F+ + ++++I+ D VPL +QENY P + E
Sbjct: 640 WGVLEKLFGPYMFSSTSRESLNDKIEYYFQDYSFVPLFVQENYPKTEPALCRNTDGFMKE 699
Query: 658 VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGE 716
+K L L+ +++S+SDGD+ + I Q W L ++ S + PA+ ++G G
Sbjct: 700 LKGLELLEDSSKSMSDGDLVDAMIHGPEQHWSLMPLHAVTSTVYPASKVYGTGG--HWGS 757
Query: 717 RNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRD--TLRLDYFSLLLKQLTEP 774
+ F GWLG+NS M R L D+ A +SK+ D +R+ Y ++ +L +P
Sbjct: 758 DSKFSFPGWLGQNSKMQALRRQLGDVQ----ARMRSKVSGDKGEIRMTYVPMMTARLVKP 813
Query: 775 L 775
L
Sbjct: 814 L 814
>gi|307166495|gb|EFN60580.1| Replication factor C subunit 1 [Camponotus floridanus]
Length = 935
Score = 326 bits (835), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 205/619 (33%), Positives = 322/619 (52%), Gaps = 54/619 (8%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
++ G ++P G KE+P GAP+CL G++F+++G DSLER+EAE LI+++ GR +V
Sbjct: 211 YLQRGGARNP---GSKEIPTGAPNCLAGVSFLLTGVFDSLERDEAEHLIRKYSGRTVNTV 267
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMK------ALAQAESKK 293
S K NY++ ++ AK KA LG ++ED L +MIR K A++ +KK
Sbjct: 268 SGKVNYIIVGDEAGPAKLAKANSLGIKQISEDDLLEMIRTRPEGKTEDVFITKAKSNAKK 327
Query: 294 SVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRK----GQNIQQSSLT---- 345
+ K S KSP + E KS S + + +P K N Q + +
Sbjct: 328 ILNK---SEEDKSPLSKEEKSASTNSYDLSEKINICAPVIPKQTLDAINYSQETTSIGSQ 384
Query: 346 -WTEKYRPKTPNEIVGNQ---QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
EKYRPKT +I+G Q + LH WL W + ++ K KQ + KAA+
Sbjct: 385 PLVEKYRPKTMKQIIGQQGDKSCARNLHVWLRDWYKNRQNSKLKNGSSKQTHGESFKAAL 444
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
LSG PG+GKTT ++VC+ LG+ +E NASD+R K K + L+SN
Sbjct: 445 LSGPPGVGKTTTVQVVCKELGYDLVEFNASDTRNKTLLK----------EEVSGLLSNTT 494
Query: 462 LSANMDRSKHPKT---VLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQK 517
+ + +K T VL+MDEVDGM+ DRGG+ +L+ IK +++PIICICNDR++ +
Sbjct: 495 MKDYVTGTKQKTTSKHVLLMDEVDGMAGNEDRGGLQELLTLIKNTEVPIICICNDRFNTR 554
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+K++ + DLRF K R ++I ++ + E +++ L L + N DIR IN L+
Sbjct: 555 VKTISMHSYDLRFHKLRVEQIRSAMLSLCYKENIKMPTEDLNRLIESTNYDIRQVINHLE 614
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDL 636
++ ++ D + S K+ + PF + F K + ++++I L D ++
Sbjct: 615 FLGGRTPHVEAIDKKH----SNKNFKLGPFDVIKMAFNAEEQKNMSLNDKIGLYFHDYNI 670
Query: 637 VPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLA 696
PL +QENY++ R S +++L IA AA+SIS GD+ +R N W L +
Sbjct: 671 APLFVQENYLSVRSSQVPL--LQKLDKIAHAADSISQGDVIEKAMRSNMMWSLLPLHACF 728
Query: 697 SCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGR 756
S +IP M G + L RF GW G+NS + RL+++L H + + +
Sbjct: 729 SFVIPTNEMSGNLDALV-------RFPGWFGRNSKATRFNRLIQELTTHTRLT--TGANK 779
Query: 757 DTLRLDYFSLLLKQLTEPL 775
D L +DY + + +PL
Sbjct: 780 DALNMDYMVHIRNAIIKPL 798
>gi|58260802|ref|XP_567811.1| purine nucleotide binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134117247|ref|XP_772850.1| hypothetical protein CNBK2210 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255468|gb|EAL18203.1| hypothetical protein CNBK2210 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229892|gb|AAW46294.1| purine nucleotide binding protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 1001
Score = 325 bits (832), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 213/620 (34%), Positives = 325/620 (52%), Gaps = 55/620 (8%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P G KE+PEGAPDCL GLTFV +G ++SL RE+A++L++R+ G+VT + S KT+Y++
Sbjct: 258 PKAPGSKEIPEGAPDCLAGLTFVFTGEMESLGREDAQELVRRYSGKVTTAPSGKTSYVVV 317
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQ 308
E+ +K K KE P + ED ++IR K K +VEK + K+ +
Sbjct: 318 GENAGVSKLNKVKEKKIPMINEDEFLELIRQRSSGKGPDGTVDKAAVEKATKAREKEEKK 377
Query: 309 NIEAKSTSAPKAPIERMKTVASPAKRKGQNIQ------QSSLTWTEKYRPKTPNEIVGNQ 362
+E + E + + +GQ + S+ WT KY P + EI GN+
Sbjct: 378 ILEQAKEMEEREKKEEKERIRKQKALEGQGMAVKKMGPASAQLWTTKYAPTSLKEICGNK 437
Query: 363 QLVKQLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPGMGKTTAAKLVCQM 420
V++L WL W + + K N KK ++ +A ++SG PG+GKTT+A L+ +
Sbjct: 438 APVERLGQWLQDWQKNY-----KANFKKPGKDGMGIYRAVLISGPPGIGKTTSAHLMAKE 492
Query: 421 LGFQAIEVNASDSRGK--------ADAKI------SKGIGGSNANSIKELVSNEALSANM 466
G+ +E+NASD+R K D K +G+G NA +K +
Sbjct: 493 AGYTPLELNASDTRSKKLIENETNVDNKSLDGFFKGQGVGDINAAGLK-----------I 541
Query: 467 DRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCS 526
D +T LIMDEVDGMSAGDRGG+ L IK +KIP+I ICNDR QK+K L +
Sbjct: 542 DS----RTCLIMDEVDGMSAGDRGGVGALNTLIKKTKIPMILICNDRTLQKMKPLQSTTF 597
Query: 527 DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVI 586
++ FR+P+ EI R+M I + E L++ ++EL VN DIR +N L L S +
Sbjct: 598 NMTFRRPQPNEIRSRIMSILHKEKLKIPPNVVDELVKGVNSDIRQVLNMLSTFKLGKSEM 657
Query: 587 KYDDIRQRLLSSAKDEDISPFTAVDKL---FGFN-GGKLRMDERIDLSMSDPDLVPLLIQ 642
+D+ +Q + + K+ ++PFT +D+L + F+ K + +RI+L D VPL +Q
Sbjct: 658 NFDEGKQLVKVNEKNTIMTPFTIIDRLTGPYAFSKNSKETLGDRIELYFHDFSFVPLFMQ 717
Query: 643 ENYINYRPS-----SAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLA 696
E+Y+ P+ +K L L+++AA+SISDGD+ + I ++Q W L ++A
Sbjct: 718 EHYLKTNPTVLNNLDGPEKNLKHLELVSKAADSISDGDLIDRMIHGSEQHWSLLPLHAVA 777
Query: 697 SCIIPAALMHG-QRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG 755
S + PA ++G R F WLG+NS K R L D+ + R S
Sbjct: 778 STVKPAMHVYGAMRSQGGGWGSWGPAFPQWLGQNSKQNKLQRQLTDIQI-RMRLRVSG-S 835
Query: 756 RDTLRLDYFSLLLKQLTEPL 775
R+ +R Y LL ++ PL
Sbjct: 836 REEIREQYMPLLASKIVSPL 855
>gi|321264327|ref|XP_003196881.1| DNA replication activator 1 subunit1 (Replication factor C subunit
1) [Cryptococcus gattii WM276]
gi|317463358|gb|ADV25094.1| DNA replication activator 1 subunit1 (Replication factor C subunit
1), putative [Cryptococcus gattii WM276]
Length = 991
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 208/607 (34%), Positives = 325/607 (53%), Gaps = 31/607 (5%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P G KE+PEGAPDCL GLTFV +G ++SL RE+A++L++R+ G+VT + S KT+Y++
Sbjct: 250 PKAPGSKEIPEGAPDCLAGLTFVFTGEMESLGREDAQELVRRYSGKVTTAPSGKTSYVVV 309
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQ 308
E+ +K K KE P + ED ++IR + K K ++EK + + K+ +
Sbjct: 310 GENAGVSKLNKVKEKKIPMIDEDEFLELIR-QRSGKGPGGTVDKAAMEKASKTREKEEKK 368
Query: 309 NIEAKSTSAPKAPIERMKTVASPAKRKGQNIQ------QSSLTWTEKYRPKTPNEIVGNQ 362
+E + E + + +GQ + S+ WT KY P + EI GN+
Sbjct: 369 ILEQAREMEEREKKEEKERIRKQKALEGQGMAVKKTGPASAQLWTTKYAPTSLKEICGNK 428
Query: 363 QLVKQLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPGMGKTTAAKLVCQM 420
V++L WL W + K N KK ++ +A ++SG PG+GKTT+A L+ +
Sbjct: 429 APVERLGQWLKDWQNNY-----KANFKKPGKDGMGIYRAVLISGPPGIGKTTSAHLMAKE 483
Query: 421 LGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSK-HPKTVLIMD 479
G+ +E+NASD+R K K+ + + S+ + + N K +T LIMD
Sbjct: 484 AGYTPLELNASDTRSK---KLIENETNVDNKSLDGFFKGQGIGTNAAGLKIGSRTCLIMD 540
Query: 480 EVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIA 539
EVDGMSAGDRGG+ L I+ +KIP+I ICNDR QK+K L + ++ FR+P+ EI
Sbjct: 541 EVDGMSAGDRGGVGALNTLIRKTKIPMILICNDRTLQKMKPLQSTTFNMTFRRPQPNEIR 600
Query: 540 KRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSA 599
R+M I + E L++ ++EL VN DIR +N L L S + +D+ +Q + +
Sbjct: 601 SRIMSILHKEKLKIPPNVVDELIKGVNSDIRQVLNMLSTFKLGKSEMNFDEGKQLVKVNE 660
Query: 600 KDEDISPFTAVDKL---FGFN-GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAG- 654
K+ ++PFT +DKL + F+ K +++RI+L D VPL +QE+Y+ P++
Sbjct: 661 KNTIMTPFTIIDKLTGPYAFSKNSKETLNDRIELYFHDFSFVPLFMQEHYLKTNPTALNN 720
Query: 655 ----RDEVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHG-Q 708
+K L L+++AA+SISDGD+ + I ++Q W L ++AS + PA ++G
Sbjct: 721 LDGPEKNLKHLELVSKAADSISDGDLIDRMIHGSEQHWSLLPLHAVASTVKPAMQVYGAM 780
Query: 709 RETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLL 768
R F WLG+NS K R L D+ + R S R +R Y LL
Sbjct: 781 RSQGGGWGSWGPAFPQWLGQNSKQNKLQRQLTDIQI-RMRLRVSG-SRAEIREQYMPLLA 838
Query: 769 KQLTEPL 775
++ PL
Sbjct: 839 SKIVSPL 845
>gi|405119275|gb|AFR94048.1| purine nucleotide binding protein [Cryptococcus neoformans var.
grubii H99]
Length = 1003
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 211/620 (34%), Positives = 326/620 (52%), Gaps = 55/620 (8%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P G KE+PEGAPDCL GLTFV +G ++SL RE+A++L++R+ G+VT + S KT+Y++
Sbjct: 260 PKAPGSKEIPEGAPDCLAGLTFVFTGEMESLGREDAQELVRRYSGKVTTAPSGKTSYVVV 319
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQ 308
E+ +K K KE P + ED ++IR K A + ++EK + K+ +
Sbjct: 320 GENAGVSKLNKVKEKKIPMINEDEFLELIRQRSSGKGPGGAVDRAAMEKATKAREKEEKK 379
Query: 309 NIEAKSTSAPKAPIERMKTVASPAKRKGQNIQ------QSSLTWTEKYRPKTPNEIVGNQ 362
+E + E + + +GQ + S+ WT KY P + EI GN+
Sbjct: 380 ILEQAKEMEEREKKEEKERLRKQKALEGQGMAIKKTGPASAQLWTTKYAPTSLKEICGNK 439
Query: 363 QLVKQLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPGMGKTTAAKLVCQM 420
V++L WL W + + K N KK ++ +A ++SG PG+GKTT+A L+ +
Sbjct: 440 APVERLGQWLQDWQKNY-----KANFKKPGKDGMGVYRAVLISGPPGIGKTTSAHLMAKE 494
Query: 421 LGFQAIEVNASDSRGK--------ADAKI------SKGIGGSNANSIKELVSNEALSANM 466
G+ +E+NASD+R K D K +G+G NA +K +
Sbjct: 495 AGYIPLELNASDTRSKKLIENETNVDNKSLDGFFKGQGVGEINAAGLK-----------I 543
Query: 467 DRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCS 526
D +T LIMDEVDGMSAGDRGG+ L IK +KIP+I ICNDR QK+K L +
Sbjct: 544 DS----RTCLIMDEVDGMSAGDRGGVGALNTLIKKTKIPMILICNDRTLQKMKPLQSTTF 599
Query: 527 DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVI 586
++ FR+P+ EI R+M I + E L++ ++EL VN DIR +N L L S +
Sbjct: 600 NMTFRRPQPNEIRSRIMSILHKEKLKIPPNVVDELVKGVNSDIRQVLNMLSTFKLGKSEM 659
Query: 587 KYDDIRQRLLSSAKDEDISPFTAVDKL---FGFN-GGKLRMDERIDLSMSDPDLVPLLIQ 642
+D+ + + + K+ ++PFT +DKL + F+ K + +R++L D VPL +Q
Sbjct: 660 NFDEGKHLVKVNEKNTIMTPFTIIDKLTGPYAFSKNSKETLGDRMELYFHDFSFVPLFMQ 719
Query: 643 ENYINYRPSSAG-----RDEVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLA 696
E+Y+ P++ +K L L+++AA+SISDGD+ + I ++Q W L ++A
Sbjct: 720 EHYLKTNPTALNNLDGPEKNLKHLELVSKAADSISDGDLIDRMIHGSEQHWSLLPLHAVA 779
Query: 697 SCIIPAALMHG-QRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG 755
S + PA ++G R F WLG+NS K R L D+ + R S
Sbjct: 780 STVKPAMHVYGAMRSQGGGWGSWGPAFPQWLGQNSKQNKLQRQLTDIQI-RMRLRVSG-S 837
Query: 756 RDTLRLDYFSLLLKQLTEPL 775
R+ +R Y LL ++ PL
Sbjct: 838 REEIREQYMPLLASKIVSPL 857
>gi|307197038|gb|EFN78410.1| Replication factor C subunit 1 [Harpegnathos saltator]
Length = 1045
Score = 321 bits (823), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 218/633 (34%), Positives = 336/633 (53%), Gaps = 71/633 (11%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
++ G ++P G K +P GA +CL GLTF+ +G +SLER E EDLIK +GGR+ SV
Sbjct: 311 YLQRGGARNP---GSKTIPTGAKNCLAGLTFLTTGVFESLERNEVEDLIKNYGGRIVNSV 367
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA--LAQAESKKSVEK 297
S K NY++ ++ AK KA L +TED L +MIR K+ + ++K +V+K
Sbjct: 368 SSKVNYIMVGDEAGPAKLAKANTLSIKQITEDDLLEMIRTRPEGKSEDIKPTKAKPNVKK 427
Query: 298 VAA---SLPKKSPQNIEAKSTSAPK--APIERMKTVASPAKRK--------------GQN 338
+++ S SP +A S K +PI +K SP + N
Sbjct: 428 MSSKSESDTSPSPNKTKALLVSPKKETSPISSLKIKMSPKSVEIKISLPEPKQTSDISSN 487
Query: 339 IQQ-----SSLTWTEKYRPKTPNEIVGNQ---QLVKQLHTWLAHWNEKFLDTGTKRNGKK 390
+Q+ SS EKYRPKT +I+G Q L+ WL W++ D ++ K
Sbjct: 488 LQEATTNVSSEPLVEKYRPKTLKQIIGQQGDRSSAHNLYVWLRDWHKNRQDP---KSSSK 544
Query: 391 QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNA 450
QN+ + KAA+LSGSPG+GKTT A++VC+ LG+ +E NASD+R K K + + G
Sbjct: 545 QNNGQSFKAALLSGSPGVGKTTTAQIVCKELGYDLLEFNASDTRSKTLLK--EQVSG--- 599
Query: 451 NSIKELVSNEALSANMDRSKH---PKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPI 506
L+SN + +K K L+MDEVDGM+ DRGG+ +L+ IK + +P+
Sbjct: 600 -----LLSNTTMKDYCTGNKQKITSKHALLMDEVDGMAGNEDRGGLQELVNLIKHTDVPV 654
Query: 507 ICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN 566
ICICNDR++ K+++L + DL+F K R ++I + + E ++++ L+ L + N
Sbjct: 655 ICICNDRFNTKMRTLSCHTYDLKFPKLRVEQIRSSMKSLCFKENIQISTEDLDRLIESTN 714
Query: 567 GDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLR---M 623
DIR IN L+++S + ++ D + S K+ + PF V KL FN + R +
Sbjct: 715 YDIRQVINHLEFLSGKTAHVEAADKKH----SNKNFKLGPFD-VAKLV-FNAAEQRSMNL 768
Query: 624 DERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRR 683
+++I L D ++ PL +QENY + S ++RL IARAA+SIS GD+ +R
Sbjct: 769 NDKIGLYFHDYNIAPLFVQENYPAVKLSQVS--SLQRLEKIARAADSISQGDLIEKVMRS 826
Query: 684 NQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLH 743
+ W L + S +IP M G +++ RF GW G+NS + RL+++L
Sbjct: 827 SMMWSLLPLHACFSFVIPGNEMSGNLDSMV-------RFPGWFGRNSKATRFNRLMQELT 879
Query: 744 FH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
H LA+ +K D L LDY + + +PL
Sbjct: 880 THTRLATGANK---DALNLDYMVHIRNAVVKPL 909
>gi|443895827|dbj|GAC73172.1| vacuolar H+-ATPase V1 sector, subunit F [Pseudozyma antarctica
T-34]
Length = 953
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 207/605 (34%), Positives = 320/605 (52%), Gaps = 55/605 (9%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P G K++P+G P+CL GLT V +G L S+ R+EA DL KR+G R+T S KT+Y++
Sbjct: 257 PSAPGSKDIPQGQPNCLAGLTLVFTGELSSISRDEATDLAKRYGARITSGPSSKTSYVVL 316
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQ 308
E K K+ P L EDG D+IR+ + A L +K+
Sbjct: 317 GEGAGPKKLESIKKNKIPTLDEDGFLDLIRS-----------------RGAGELDEKAKA 359
Query: 309 NIEAKSTSAPKAPIERMKTVASP-AKRKGQNIQQS---SLTWTEKYRPKTPNEIVGNQQL 364
I+A+ E++K VAS KG + S ++ WT KY PK ++VGN+
Sbjct: 360 KIKAEE--------EKIKQVASSMGPPKGAQVDLSDYANMLWTTKYAPKQIKDLVGNKAA 411
Query: 365 VKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424
V++L WL W + + K+ GK + + +A ++SG PG+GKTT+A LV +M G+
Sbjct: 412 VEKLAAWLKAWPSSY-RSNFKKPGK--DGMNVYRAVLISGPPGIGKTTSAHLVAKMEGYS 468
Query: 425 AIEVNASDSRGK--ADAKISKGIGGSNANSIKELVSNEALSANMDRSK-HPKTVLIMDEV 481
+E NASD+R K ++ + I + +S S A +++ D + H +TVLIMDEV
Sbjct: 469 PLEFNASDARSKKLIESMLQDTINNKSLDSWYSGGSGGAKASSSDVPRIHERTVLIMDEV 528
Query: 482 DGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
DGMS GDRGG+ + A IK +K+PIICICNDR +QK++ + +L FRKP + R
Sbjct: 529 DGMSGGDRGGVGAINALIKKTKVPIICICNDRRNQKMRPFEHTTYNLGFRKPDAAAVKSR 588
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD 601
++ IA E L++ + +L + DIR IN L LS S + +D+ + ++K
Sbjct: 589 MLSIAFKEKLKIPGEVMAQLIEAAQSDIRSVINMLSTWKLSKSTMDFDESKALGAENSKP 648
Query: 602 EDISPFTAVDKL---FGFNG-GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRD- 656
+PFT +L + F+ + ++++ DL D VPL++ ENY+ RP A R+
Sbjct: 649 GLHTPFTLYSELSSPYMFSATSRKTLNDKADLYFQDHSFVPLMVAENYVKARPVLASRES 708
Query: 657 ----EVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRET 711
++K L L+ +A+ESISDGD+ + I ++Q W L ++AS + P + ++G E
Sbjct: 709 GPRQQLKHLELLRKASESISDGDLVDRMIHGSEQHWSLMPLHAIASSVRPCSFIYGGTEG 768
Query: 712 LEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQ 770
F F GWLG+NS + R + D+ L SK LR Y + +
Sbjct: 769 ------GFPSFPGWLGQNSKQQRLTRAVVDVQAKMRLVCSGSK---HDLRQHYLPSMWRM 819
Query: 771 LTEPL 775
L +P+
Sbjct: 820 LIQPM 824
>gi|319411789|emb|CBQ73832.1| related to replication factor C protein [Sporisorium reilianum
SRZ2]
Length = 954
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 210/609 (34%), Positives = 314/609 (51%), Gaps = 63/609 (10%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P + G K++P+GAP+CL GLT V +G L S+ R+EA DL KR+G R+TG+ S KT+Y++
Sbjct: 255 PSNPGSKDIPQGAPNCLAGLTLVFTGELTSISRDEATDLAKRYGARITGAPSSKTSYVIV 314
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQ 308
E K K+ L ED D+IR + A L +K+ Q
Sbjct: 315 GEGAGPKKLESIKKNKIETLDEDAFLDLIRT-----------------RGAGELDEKAKQ 357
Query: 309 NIEAKSTSAPKAPIERMKTVA---SPAKRKGQNIQQ-SSLTWTEKYRPKTPNEIVGNQQL 364
I+A+ E++K VA P K N S++ WT KY P ++VGN+
Sbjct: 358 KIKAEE--------EKIKEVAKSMGPPKDASINPADLSNMLWTTKYAPTQMKDLVGNKAA 409
Query: 365 VKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424
V++L WL W + + K N +A ++SG PG+GKTT+A LV +M G+
Sbjct: 410 VEKLAGWLKAWPDSYRSNFKKPGPTGMN---VFRAVLISGPPGIGKTTSAHLVAKMEGYS 466
Query: 425 AIEVNASDSRGK-------ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLI 477
+E NASD+R K D +K + +N++K+ S+ S+++ R H +TVLI
Sbjct: 467 PLEFNASDTRSKKLIEGMLQDTINNKSLDSWYSNTVKQASSS---SSDLPRI-HERTVLI 522
Query: 478 MDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQE 537
MDEVDGMS GDRGG+ + A IK +K+PIICICNDR +QK++ + +L FRKP +
Sbjct: 523 MDEVDGMSGGDRGGVGAINALIKKTKVPIICICNDRRNQKMRPFEHTTYNLSFRKPDANQ 582
Query: 538 IAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLS 597
+ R++ IA E L++ + +L + DIR IN L LS + + +D+ +
Sbjct: 583 VKSRMLSIAFKEKLKIPGEVMAQLIEAAQSDIRSVINMLSTWKLSKNSMDFDESKSLGAE 642
Query: 598 SAKDEDISPFTAVDKLFG---FNG-GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSA 653
+AK +PF+ L FN K ++++ DL D VPL++ ENY RP A
Sbjct: 643 NAKPGLHTPFSLYSDLSAPGMFNANSKKTLNDKADLYFQDHSFVPLMVAENYAKARPVLA 702
Query: 654 GRD-----EVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHG 707
R+ +VK L L+ RA+ESISDGD+ + I +Q W L ++AS + P + ++G
Sbjct: 703 ARETGPRQQVKHLELLKRASESISDGDLVDRMIHGGEQHWSLMPLHAIASSVRPCSYIYG 762
Query: 708 QRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSL 766
E F F WLG+NS + R + DL L S R +R Y
Sbjct: 763 GTEG------GFPSFPAWLGQNSKQQRLTRAVVDLQAKMRLVCSGS---RHDVRQHYLPS 813
Query: 767 LLKQLTEPL 775
+ L +P+
Sbjct: 814 MWSMLVQPM 822
>gi|388855019|emb|CCF51346.1| related to replication factor C protein [Ustilago hordei]
Length = 980
Score = 320 bits (819), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 211/606 (34%), Positives = 309/606 (50%), Gaps = 52/606 (8%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P G KE+P+GAP+CL GLT V +G L SL REEA +L KR+G R+TGS S KT+Y++
Sbjct: 264 PSAPGSKEIPQGAPNCLAGLTLVFTGELCSLSREEAVELAKRYGARITGSPSSKTSYVVL 323
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKP------MKALAQAESKKSVEKVAASL 302
+ K + P L ED ++IR KA +AE K +E+VA +L
Sbjct: 324 GQGAGPKKMDSIHKNKIPTLDEDEFLNLIRTRAAGQLDDKTKAKMKAEEDK-IEQVAKTL 382
Query: 303 PKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQ 362
P + + A ++ S+ WT KY PK ++VGN+
Sbjct: 383 -----------------GPPCQGAGAGAGAGADVDAVEYGSMLWTTKYAPKQMKDLVGNK 425
Query: 363 QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422
V++L WL W E + +G K+ GK + +A ++SGSPG+GKTT+A LV + G
Sbjct: 426 AAVEKLAGWLRVWPESY-RSGFKKPGK--DGMGIYRAVLISGSPGIGKTTSAHLVAKREG 482
Query: 423 FQAIEVNASDSRGK--ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDE 480
+ +E NASD+R K +A + I N S+ + + + H +TVLIMDE
Sbjct: 483 YSPLEFNASDARSKKLIEAMLEDTI---NNKSLDSWYNPRGGTGSHVARMHERTVLIMDE 539
Query: 481 VDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK 540
VDGMS GDRGGI + A IK +K+PIICICNDR QK++ + +L FRKP ++
Sbjct: 540 VDGMSGGDRGGIGAINALIKKTKVPIICICNDRRDQKMRPFEHTTFNLSFRKPDAAQVKS 599
Query: 541 RLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAK 600
R++ IA E L++ + +L + DIR IN L LS + +D+ + AK
Sbjct: 600 RMLSIAFREKLKIRGEVMAQLIEAARSDIRSLINMLSAWKLSKDTMDFDESKLLSFDQAK 659
Query: 601 DEDISPFTAVDKL-----FGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGR 655
+PF+ L FG K ++++ +L D +PL++ ENY+ RP +
Sbjct: 660 PGLATPFSLYSDLSSASMFGTTSRKT-LNDKAELYFQDHSFLPLMVAENYVKARPILLSQ 718
Query: 656 D-----EVKRLSLIARAAESISDGDIFNVQIRRNQ-QWQLSQSSSLASCIIPAALMHGQR 709
D EVK L L+++A+ESISDGD+ + I ++ W L S+AS + P + ++G
Sbjct: 719 DSGPMKEVKHLHLLSKASESISDGDMIDRMIHASEPHWSLMPLHSIASSVRPCSFIYGGT 778
Query: 710 ETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLK 769
+T F F WLG+NS + LR L DL S S R LR Y +
Sbjct: 779 QT------GFPTFPSWLGQNSKQQRLLRSLVDLQAK--MSLISSSSRHDLRQHYVPTMWT 830
Query: 770 QLTEPL 775
L P+
Sbjct: 831 MLVNPI 836
>gi|321469644|gb|EFX80623.1| hypothetical protein DAPPUDRAFT_318220 [Daphnia pulex]
Length = 1045
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 206/618 (33%), Positives = 315/618 (50%), Gaps = 51/618 (8%)
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
G K VPEGAP CL GLT V++G L+SL REEAE L+K++GG+ +VSK T+YLL +D
Sbjct: 289 GSKPVPEGAPGCLTGLTIVVTGVLESLHREEAEGLVKKYGGKAPKAVSKNTSYLLAGDDA 348
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKK------SVEKVAASLPKKS 306
+K +KAK+L P L+ED +I + L+ +KK S K AAS K
Sbjct: 349 GPSKLSKAKDLNVPMLSEDDFLKLIATRPAGQGLSSPAAKKAPTTPRSAHKAAASR-KAE 407
Query: 307 PQ----------------------NIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSL 344
P+ +++ + +S+ API + + ++ + N Q+ L
Sbjct: 408 PEPPSKPITVSSPPKKKSPEPKKIDLKPQQSSSTAAPIRKAEPISVKMEVAEGN-DQAQL 466
Query: 345 TWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE-KAA 400
W +KY+P + +++G ++ + K+L WL W + K + ND A KAA
Sbjct: 467 PWVDKYKPTSLKQVIGMHGDRSIAKKLVYWLKSWYDNRGKKLAKPSPWSTNDDGAFFKAA 526
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
+LSG PG+GKTT A L + LG+ +E+NASD+R K + + + ++ ++
Sbjct: 527 LLSGPPGIGKTTTAHLAAKELGYDLVEMNASDTRSKR--LLHEHVMELLSSQSLSSYAHG 584
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLK 519
+ R K VL+MDEVDGM+ DRGGI +LIA IK SKIP++CICNDR K++
Sbjct: 585 SAQIEGGR----KRVLVMDEVDGMAGNEDRGGIQELIAMIKTSKIPVVCICNDRQHPKIR 640
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
SL NYC DL+F KP+ +++ +M I EGL + AL+E+ N D+R ++ L +
Sbjct: 641 SLSNYCYDLKFTKPKIEQVRGAMMSICFKEGLSLKPEALDEIIMGANQDVRQVLHHLSML 700
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVP 638
+ + + + S KD + P+ V K+F K + + ++ L D P
Sbjct: 701 ASGKKSLSTESAKLEASKSKKDLKLGPWDVVKKVFSAEEHKGMSIHDKTGLFFQDYSFGP 760
Query: 639 LLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASC 698
L +QENY P +A + +K L L+ R A +S D+ IR W L ++ +
Sbjct: 761 LFVQENYPCVVPQAAKGNAIKTLDLLGRTAHCMSQTDLIEKVIRSQNAWSLLPVEAVFAS 820
Query: 699 IIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDT 758
++P LM G + F WLGKNS K RLL++L H K +
Sbjct: 821 VVPGQLMEGFISSQ-------IVFPSWLGKNSRTNKMDRLLQELQTH--MRLKISGSKRA 871
Query: 759 LRLDYFSLLLKQLTEPLR 776
+ LDY +L + PL+
Sbjct: 872 VNLDYLPYVLNSIVGPLK 889
>gi|358332020|dbj|GAA29341.2| replication factor C subunit 1 [Clonorchis sinensis]
Length = 949
Score = 319 bits (817), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 223/687 (32%), Positives = 338/687 (49%), Gaps = 89/687 (12%)
Query: 175 GGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGR 234
R F ++ R+ P G K +P+G P CL G TFVI+G L+S+ER++A LI+R GG+
Sbjct: 151 ASRRPFWSYSAREGPRALGSKPIPKGNPTCLRGKTFVITGILESIERDDARALIERCGGK 210
Query: 235 VTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR---------------- 278
V ++ K+TNYL+ + K KA+ L + ED LF +IR
Sbjct: 211 VLKTLGKRTNYLVVGREPGEGKLAKAETLSLKQVDEDQLFRLIRELANEPEPNGAADDSE 270
Query: 279 ASKPMKALAQAESKKSVEKVAA-SLPKKSP-QNIEAKSTSAPKAPIERMKTVASPAKRKG 336
A P ++ +K+SV++ + PK +P + AKST +P A P
Sbjct: 271 AHSPQVEKPKSPTKRSVKQSPYKASPKVTPVKKSRAKSTESPTV------LTAKPLFVSS 324
Query: 337 QNIQQSSLT----------------------WTEKYRPKTPNEIVGN---QQLVKQLHTW 371
Q+I + LT W +KY+P + ++G +L+ W
Sbjct: 325 QSISDAQLTTTALQSTRSCSLPAPRPPSSELWVDKYKPTSLRTLIGQTGPSSPANRLYAW 384
Query: 372 LAHWNEKFLDTGTKRNG--------KKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423
L+ W++ F GTK + +D +AA+LSG PG+GKT++A + C LGF
Sbjct: 385 LSSWHQHFA-AGTKAHAYSSAPPWASSSDDGKWARAALLSGPPGIGKTSSATIACAELGF 443
Query: 424 QAIEVNASDSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEV 481
E+NASD R K +S+ +G N + ++ EA + + +H VL+MDEV
Sbjct: 444 STCELNASDCRSKTSLSEVVSQSLGMQN---LAQMAYGEA--SQLSTKQH---VLLMDEV 495
Query: 482 DGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK 540
DGM+ DRGG+ +LI IK ++IPIIC+CNDR S K++SL NYC DLRF +PR ++I
Sbjct: 496 DGMAGNEDRGGMQELINMIKSTRIPIICMCNDRQSPKIRSLANYCYDLRFSRPRVEQIKA 555
Query: 541 RLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAK 600
++ IA E + + L ++ + DIR IN Q S+S + + + K
Sbjct: 556 AVLSIACKENVTIQPSVLGDIIEASGHDIRQVINNTQMWSIS-GLADQAQLTSDASGAQK 614
Query: 601 DEDISPFTAVDKLF-----GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGR 655
D + F + K+F G NGG +++ +DL D +LVPL +QENY+N RP
Sbjct: 615 DIRLGAFDVIRKVFQPDISGPNGGLASINDSLDLFFQDYNLVPLFVQENYLNVRPRKTDL 674
Query: 656 DEVKRLSLIARAAESISDGDIFNVQIRR--NQQWQLSQSSSLASCIIPAALMHGQRETLE 713
+ L+L+A+A+ I+ GDI + IR W L + S + P ++ G
Sbjct: 675 KPNQLLTLLAQASTDIAFGDIISSSIRNAGAGSWSLLPVQGIFSVVRPGRILRGSLPGGG 734
Query: 714 QGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLT 772
G F W GKNS G+ R+ +L H LA+ + + LDY S+L LT
Sbjct: 735 PGGG--ISFPSWFGKNSNQGRMYRVTTELSRHMRLATHGASSNPRSFILDYASVLADLLT 792
Query: 773 EPLR---------VLPKDELLRKLLSS 790
PL+ +L K +LLR+ L S
Sbjct: 793 RPLKEGDVDSVLNMLVKYQLLREDLDS 819
>gi|328790808|ref|XP_397246.4| PREDICTED: replication factor C subunit 1 [Apis mellifera]
Length = 1009
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 225/643 (34%), Positives = 330/643 (51%), Gaps = 77/643 (11%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + +R + G K++P GA CL GL+FVI+G LDSLEREEAE+L+K++GGR+ V
Sbjct: 259 YQQYLQRGGARNPGSKKIPVGAEYCLAGLSFVITGVLDSLEREEAEELVKQYGGRILHQV 318
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA---SKPMKALAQAESKKSVE 296
+KKT+Y++ + +K +KA L ++ED L D+I+ SK +K +A E+ K++
Sbjct: 319 TKKTDYIIVGDQAGPSKLSKADSLNIKKISEDDLLDLIQEESPSKKIKIIANEET-KNLT 377
Query: 297 KVAASLPKK--------SPQNIEAKS-------------TSAPKAPIERMKTVASPAKRK 335
K+ + KK SPQ E + T ++ IE K + AK K
Sbjct: 378 KIHKEISKKEIETSLKMSPQKKEYDTKDIKIKSPIKKKYTELKESLIEDKKEI-DDAKNK 436
Query: 336 GQNIQQ------SSLTWTEKYRPKTPNEIVGNQ---QLVKQLHTWLAHWNEKFLDTGTKR 386
NI Q S+ EKYRPKT +I+G Q + K+L+ WL +W++ +G +
Sbjct: 437 KTNILQDINSKISTQALVEKYRPKTMKQILGQQGDKSIAKKLYAWLINWHKN--QSGQVK 494
Query: 387 NGK-----KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKI 441
+ K K +D + KAA+LSG PG+GKTT +++C LGF IE NASD+R K +
Sbjct: 495 HIKPNPWTKNSDGAFFKAALLSGPPGIGKTTTVQVICNELGFDLIEFNASDTRSKKLLEE 554
Query: 442 SKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIK 500
SN N++ + SKH VL+MDEVDGM+ DRGG+ +LI IK
Sbjct: 555 EVSELLSNTTLKNYFQDNKSKPS----SKH---VLLMDEVDGMAGNEDRGGLQELIKLIK 607
Query: 501 ISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEE 560
+ IPI+CICNDR K+++L NY DLRF KPR ++I + I E + + L+
Sbjct: 608 STDIPIVCICNDRNHSKMRTLANYTFDLRFSKPRLEQIRAAMKSICFKENINITNEDLDL 667
Query: 561 LADRVNGDIRMAINQL-----QYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615
L + N DIR IN L Q S S K+ + KD + + V ++F
Sbjct: 668 LIESTNQDIRQIINHLALFVGQIGSQEKSGKKHIN---------KDLKLGSWDVVKQVFS 718
Query: 616 FNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDG 674
K + +E+ DL D ++ PL +QENY+ P + K L IA +AES++ G
Sbjct: 719 AEEQKHMNFNEKCDLFFHDYNIAPLFVQENYLLVIPEAPKN---KLLEKIAESAESLALG 775
Query: 675 DIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGK 734
D IR N W L + S +IP A M G G+ N F WLG+NS K
Sbjct: 776 DTVENCIRSNNAWSLLSIQACYSSVIPGAAMSGHI----GGQIN---FPAWLGRNSKATK 828
Query: 735 NLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRV 777
RL++++ H A + ++ + LDY L + PL V
Sbjct: 829 FNRLMQEITLH--ARLTTNASKEAINLDYIKYLRNTIIRPLTV 869
>gi|340372603|ref|XP_003384833.1| PREDICTED: replication factor C subunit 1-like [Amphimedon
queenslandica]
Length = 994
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 207/607 (34%), Positives = 307/607 (50%), Gaps = 83/607 (13%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+MN G K P G KE+P+GAP+CL GLTFV +G +S+EREEA D++K +GGRVT S+
Sbjct: 294 YMNRGGPKAP---GSKEIPQGAPNCLYGLTFVFTGVGESMEREEAADIVKSYGGRVTTSL 350
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVA 299
SKKTNYL+ E +K ++AK L + EDG ++IR K + + V+
Sbjct: 351 SKKTNYLVVGEGAGVSKLSQAKSLNVCEIDEDGFLELIRTRPERKGVVTTPTNTGVK--- 407
Query: 300 ASLPKKSPQNIEAKSTSAPKA------------------------------PIERMKTVA 329
S +K N T+ P A P
Sbjct: 408 -SRKRKGSSNEPIPVTTPPPATKRPCYSVMTPTSTLTTPTTPTTPTDLSSIPTSSFYPTT 466
Query: 330 SPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQ---QLVKQLHTWLAHWNEKFLDTGTKR 386
+ + + S+L W +KY P + I+G Q +L WL W++ G
Sbjct: 467 PTSTKSAKPKGPSTLLWVDKYAPASVKGIIGQQGGKSNANKLLEWLKVWHKYH---GVSA 523
Query: 387 NGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIG 446
+ +K + KAA+LSG PG+GKTT A LVC+ L + E+NAS +R +
Sbjct: 524 STRKLTEGVFHKAALLSGPPGIGKTTTAVLVCKELDYTFTELNASATRSR---------- 573
Query: 447 GSNANSIKELVSNEALSANMD------RSKHPKTVLIMDEVDGMSAG-DRGGIADLIASI 499
S+++ V++ S +MD +H VLIMDEVDGM+ DRGG+ +LI I
Sbjct: 574 ----KSLQQFVTDSLSSHSMDSYITGGSQRH--HVLIMDEVDGMAGNEDRGGVMELIQLI 627
Query: 500 KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALE 559
K S++PIICICNDR K++SL NYC DLRF KP+ ++I +M +A EG+++ AL
Sbjct: 628 KTSRVPIICICNDRSQAKMRSLANYCFDLRFYKPKLEQIKGPMMSVAFKEGIKIKPEALN 687
Query: 560 ELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDI--SPFTAVDKLF-GF 616
E+ N DIR ++ L ++ + I ++ L I SPF V K+F F
Sbjct: 688 EIIISCNYDIRQVLHSLSMLAAGTTSI----TKESLGGGEGKTSIRKSPFDVVRKVFQPF 743
Query: 617 NGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGD 675
+G + L + E+ DL +D L+PL +QENY+ +P + ++ L ++ AA+SI+ GD
Sbjct: 744 DGQRELSLREKSDLFFTDYSLMPLFVQENYLQVKPVN-NTGTIQLLEKVSSAADSIAQGD 802
Query: 676 IFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKN 735
+ + +R +Q WQL + ++ S I+P M G E F WLG S K
Sbjct: 803 LVSRIVRSDQGWQLLPTQAIFSSILPGEYMRGGMSLPE--------FPQWLGNYSKTSKT 854
Query: 736 LRLLEDL 742
R+L+ L
Sbjct: 855 DRILQQL 861
>gi|392569013|gb|EIW62187.1| DNA replication factor C large subunit [Trametes versicolor
FP-101664 SS1]
Length = 1006
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 237/712 (33%), Positives = 353/712 (49%), Gaps = 81/712 (11%)
Query: 95 KADDDDDDFVPPSVKKNSVGATPSKKLKSGSGRAVAQKSVDIDDDEEE-----DVKKTES 149
K DDDD++ V K S TP+K + S V + D E D +K +
Sbjct: 200 KLDDDDEEIVQKGKSKPSAKKTPAKPTPAKSSTKVKAEGADKPTKAAEKKPVKDAEKKST 259
Query: 150 PLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVP-EGAPDCLGGL 208
P ++ + + A+ R G P + G KE+P P+CL GL
Sbjct: 260 PAEAKVDDASVKKPNWY-AMKASRAAG------------PSNPGSKEIPVPKDPNCLAGL 306
Query: 209 TFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKE---LGT 265
+FV +G L SL REEA +L KR+GGRV G S KT+Y++ D AG KA E L T
Sbjct: 307 SFVFTGELSSLAREEAVELAKRYGGRVVGQPSSKTSYVVLGSD-AGPSKLKAIEKNKLKT 365
Query: 266 PFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERM 325
L EDG ++I ++ +++K +EK ++ + S + +E + K
Sbjct: 366 --LDEDGFLNLIATRVVDESALDDKARKKIEKEKEAI-RDSAKEMERREKQTAKT---TA 419
Query: 326 KTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTK 385
T A PA S+ WT++Y P+T EI GN+ V++L WL W+ L G K
Sbjct: 420 GTSAKPA--------ASNQLWTQRYAPQTLKEICGNKGQVEKLQEWLGSWSGS-LQCGFK 470
Query: 386 RNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI 445
+ GK N + +A +++G PG+GKTT+A L ++ GF IE+NASD+R K + S I
Sbjct: 471 KPGK--NGMNIYRAVMVTGPPGIGKTTSAHLCAKLAGFTPIELNASDARSKKLVENSTNI 528
Query: 446 ----------GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADL 495
GG N++ +++ K+ LIMDEVDGMSAGDRGG+ L
Sbjct: 529 MNASLDGWMHGGHATNAVGMTITD-------------KSCLIMDEVDGMSAGDRGGVGAL 575
Query: 496 IASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNE 555
A IK +KIPIICI NDR +QKLK L N +L +R+P I R++ IA E L++
Sbjct: 576 CALIKKTKIPIICIANDRGAQKLKPLTNVTFNLSYRRPEATAIRSRILSIAFKEKLKIPA 635
Query: 556 IALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615
+++L DIR +N L LS + + +D+ + + + K ++PF ++K+ G
Sbjct: 636 NVIDQLVQGAQSDIRQVLNMLSTWKLSNTEMDFDEGKTLVKMNEKYTVMTPFGVINKMLG 695
Query: 616 ---FN-GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPS-----SAGRDEVKRLSLIAR 666
F+ + + ++I+L DP VPL +QENY+ +PS +K L L+ +
Sbjct: 696 PQMFSPTSRETLGDKIELYFHDPSFVPLFMQENYLKTQPSRIRNTDGPEKTLKHLELMYK 755
Query: 667 AAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGW 725
AAES+SDGDI + I NQ W L ++ S + PA+ ++G G N F W
Sbjct: 756 AAESLSDGDIVDSLIHGPNQYWSLMPLHAVCSTVRPASFLYGMGAGY--GGPNAMSFPQW 813
Query: 726 LGKNSTMGKNLRLLEDLHFHHLASRKSKLGRD--TLRLDYFSLLLKQLTEPL 775
LG+NS K R L D+ A + K+ D +R Y L + +PL
Sbjct: 814 LGQNSKQSKLSRQLTDVQ----ARMRLKVSGDKAEIRQSYIPSLFPHIVKPL 861
>gi|290991775|ref|XP_002678510.1| replication factor C large subunit [Naegleria gruberi]
gi|284092123|gb|EFC45766.1| replication factor C large subunit [Naegleria gruberi]
Length = 994
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 207/605 (34%), Positives = 319/605 (52%), Gaps = 63/605 (10%)
Query: 191 HKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDE 250
+ G K VP G +CL +FVI+G ++SL+R+E EDLIK++GG + G+VS +T++++ +
Sbjct: 265 NHGCKTVPVGKANCLKDKSFVITGQMESLDRDEMEDLIKQYGGVIRGNVSGRTSFVVVGD 324
Query: 251 DIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAAS-LPKKSPQN 309
+K K +E T L+ED L +MI S P + E+ V +P P +
Sbjct: 325 GPGESKMKKVREHKTKQLSEDDLLEMIAKSNPSGKDSMDETDDDVSPPPQKFIPPSKPNS 384
Query: 310 IEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLH 369
+ A +T K+ K + Q W EKY+P T ++I+G+ + L
Sbjct: 385 VGASTTQVIKS--------------KNADDQ----LWVEKYKPSTSSQIIGHNKECGLLL 426
Query: 370 TWLAHW----NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA 425
WL W +++ T+ G+K+ ++AA LSG PG+GK+T+A L+ + GF
Sbjct: 427 NWLKEWHANLDKEIQAASTQTKGRKKAATEWKRAAFLSGPPGIGKSTSAALIAKEAGFTN 486
Query: 426 I-EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANM----DRSKHPK------- 473
I E+NASDSR K ++KE + LS N+ + PK
Sbjct: 487 IVELNASDSRSK--------------KAMKEQIVESCLSNNISNYFQKKGQPKPKDDKQR 532
Query: 474 TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKP 533
T++IMDEVDGMS+GDRGG+ +L+ IK +++P+ICI NDR LK+L+ +C DL+F +P
Sbjct: 533 TIVIMDEVDGMSSGDRGGVVELVQIIKQTRVPVICIANDRSKISLKTLITHCLDLKFSRP 592
Query: 534 RKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL--SLSVIKYDDI 591
K I K+L+++ E L ++ ALE + + +N DIR +N LQ ++ + I Y D
Sbjct: 593 SKATITKKLLEVCKKENLSIDNNALEYMVESLNNDIRSVLNNLQLINRYSAKDHIGYLDA 652
Query: 592 RQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPS 651
+ L+ D F V + G N K +ER++ DP LVPL +++NYIN RP
Sbjct: 653 KSSDLTKTSSTD-GIFDVVKDVLGQNSKKY--NERLEDFYFDPMLVPLFVEQNYINIRPP 709
Query: 652 SAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRET 711
++ ++R+S A++SIS GDI N +IR+ + L S + S + PA + G +
Sbjct: 710 GDDKERIQRISY---ASDSISMGDIVNSKIRKEMSFGLMNSHAFYSTMYPAYFIRGSFQA 766
Query: 712 LEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLR-LDYFSLLLKQ 770
L +G + +F LGK ST KN L+ + + K DTL LDY LL K
Sbjct: 767 L-RGYDKYYQFPAVLGKGSTTTKNYNALKTIQ----KTTSLKASADTLEMLDYLPLLSKT 821
Query: 771 LTEPL 775
L PL
Sbjct: 822 LLNPL 826
>gi|156841650|ref|XP_001644197.1| hypothetical protein Kpol_1059p29 [Vanderwaltozyma polyspora DSM
70294]
gi|156114834|gb|EDO16339.1| hypothetical protein Kpol_1059p29 [Vanderwaltozyma polyspora DSM
70294]
Length = 858
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 203/603 (33%), Positives = 318/603 (52%), Gaps = 57/603 (9%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
++PEG P+CL GLT V +G L +LER AE L KR+G RVT S+S+KT+ ++ E+
Sbjct: 139 DIPEGRPNCLLGLTIVFTGVLPTLERGNAETLAKRYGARVTSSISRKTSVVVLGEEAGPK 198
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKST 315
K K K+LG + EDG F + A P + ++KS +K+ K+ Q + ++
Sbjct: 199 KVEKIKQLGVKAINEDG-FKQLIAGMPAEGGEGEAAEKSRQKL-----KEQEQQAKKEAE 252
Query: 316 SAPKAPIERMKTVASPAKRKGQNIQQSSLT------WTEKYRPKTPNEIVGNQQLVKQLH 369
K +R + + + A+ G+N+ + L WT KY P ++I GN+ + +L
Sbjct: 253 VMIKEEAKRQEKIKN-AQMSGENVMKDDLVREQDKLWTVKYAPTNSSQICGNKGTINKLK 311
Query: 370 TWLAHWNEKFLDTGTKRNGKK---QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426
TWL++W+ K NG K ++ + +AA+L G PG+GKTTAA L+ + LG+ +
Sbjct: 312 TWLSNWDH------AKSNGFKSPGRDGSGIYRAAMLYGPPGIGKTTAAHLIAKELGYDIL 365
Query: 427 EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHP------KTVLIMDE 480
E NASD R K+ + +K + N ++ + P K V+IMDE
Sbjct: 366 EQNASDVRSKSLLNLG----------VKNALDNMSIVGYFKHKEEPSEAHGKKFVIIMDE 415
Query: 481 VDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK 540
VDGMS GDRGG+ L + + P+I ICN+R K++ C D++FR+P I
Sbjct: 416 VDGMSGGDRGGVGQLAQFCRKTSTPMILICNERNQPKMRPFDRVCLDVQFRRPDANSIKS 475
Query: 541 RLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAK 600
RLM IA E +++ +++L GD+R IN L +S + I +++I + + K
Sbjct: 476 RLMTIAIREKFKLDPNIIDKLVQSTRGDMRQIINLLSTISKTTKHINHENINEISQAWEK 535
Query: 601 DEDISPFTAVDKLFG------FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAG 654
+ + PF +L ++++I L D D PL+IQENYI+ RP++
Sbjct: 536 NVALKPFDITLRLLSGQIYSDLGSNNFTLNDKIALYFDDFDFTPLMIQENYIHSRPATLK 595
Query: 655 RDEVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLE 713
DE L +A AA+SIS GD+ +IR ++Q W L ++ S ++P++ + GQ
Sbjct: 596 NDET-HLDAVAAAADSISLGDLVERKIRSSEQLWSLLPLHAVLSSVLPSSKVAGQM---- 650
Query: 714 QGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLT 772
G NF WLG+NS GK RLL++L +H L++ K G LRL+Y S ++L
Sbjct: 651 SGRVNFT---SWLGQNSKRGKFFRLLQELQYHTTLSTSTDKFG---LRLEYMSTFKRRLL 704
Query: 773 EPL 775
PL
Sbjct: 705 NPL 707
>gi|154281839|ref|XP_001541732.1| hypothetical protein HCAG_03830 [Ajellomyces capsulatus NAm1]
gi|150411911|gb|EDN07299.1| hypothetical protein HCAG_03830 [Ajellomyces capsulatus NAm1]
Length = 1066
Score = 315 bits (806), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 212/625 (33%), Positives = 321/625 (51%), Gaps = 49/625 (7%)
Query: 181 MNFGER-KDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
NF +R +DP G K++P GA +CL GL+FV +G LD+L REE + L+KR+GG+VT +
Sbjct: 304 FNFAQRSRDPVTSGSKDLPVGAENCLAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSAP 363
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR---------ASKPMKALAQAE 290
S KTNY++ D K ++ G + EDGLF++IR + A +
Sbjct: 364 SSKTNYVVLGSDAGPKKLETIRKFGLKSINEDGLFELIRRLPANGGDGKAAEKHAAKKKV 423
Query: 291 SKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKY 350
+ ++ +AA + ++ +N + S K+ + +PA Q WT KY
Sbjct: 424 EDQRIKDMAAEIDREEKKNAASSIASTTKS----LNGAGNPAP-----AQVDDRLWTSKY 474
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHW-NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMG 409
P + + I GN+ V++L TWL +W N D K+ GK + +A ++ G PG+G
Sbjct: 475 APTSLSMICGNKGAVEKLQTWLRNWRNSSMADF--KKGGK--DGTGIYRAVMIHGPPGIG 530
Query: 410 KTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDR 468
KTTAA LV ++ + +E NASD+R K+ + G+ G + S++ S E
Sbjct: 531 KTTAAHLVAKLENYDVVESNASDTRSKS--LVETGLRGVLDTTSLQGYFSGEGKKVE--- 585
Query: 469 SKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDL 528
S VLIMDEVDGMSAGDRGG+ L A K ++IP+I ICN+R K++ + DL
Sbjct: 586 SGKKNLVLIMDEVDGMSAGDRGGVGALAAVAKKTRIPMILICNERRLPKMRPFDSVTFDL 645
Query: 529 RFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKY 588
FR+P ++I RL I EGL++ L+ L + DIR IN L L + Y
Sbjct: 646 PFRRPTVEQIRARLSTICYREGLKIPPQVLDNLIQGTHADIRQVINMLSTAKLDQPTLDY 705
Query: 589 DDIRQRLLSSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQEN 644
D +Q + K + P+ V K+ + ++E+I+L +D + L++QEN
Sbjct: 706 DQGKQMSKAWEKHIILKPWDIVGKILSAQMFSKSSETTLNEKIELYFNDHEFSYLMLQEN 765
Query: 645 YINYRPSSA----GRDE-VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASC 698
Y+N RPS+A GR++ K L L AA+SISDGD+ + I QQW L + ++ S
Sbjct: 766 YLNTRPSAANSYQGREQKFKLLELADNAAQSISDGDLVDRMIHGSQQQWSLMPTHAVFSF 825
Query: 699 IIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDT 758
+ PA+ M G + F WLG NS GK R ++++ H +S R
Sbjct: 826 VRPASFMAGNMT-------DRPAFTSWLGNNSKQGKMARQIKEIQGHMRL--RSSGDRHE 876
Query: 759 LRLDYFSLLLKQLTEPLRVLPKDEL 783
+R Y L +L PL+V KD +
Sbjct: 877 IRQQYLPALWNKLVLPLQVQGKDSV 901
>gi|350402706|ref|XP_003486574.1| PREDICTED: replication factor C subunit 1-like [Bombus impatiens]
Length = 987
Score = 315 bits (806), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 220/643 (34%), Positives = 333/643 (51%), Gaps = 74/643 (11%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + +R + G KE+P GA CL GL+FVI+G LDSLEREEAE+LIK++GGR+ +
Sbjct: 226 YQQYLQRGGARNPGSKEIPVGAEQCLTGLSFVITGVLDSLEREEAEELIKQYGGRILHQI 285
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS-----KPMKALAQAESKKS 294
SKKT+Y++ + AK +KA L ++ED L ++I++S K K E+KK+
Sbjct: 286 SKKTDYVIVGDQAGPAKLSKATNLNIKKISEDDLLELIQSSEESTPKKKKITVNEETKKA 345
Query: 295 VE------------KVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKR----KGQN 338
+ ++ SL ++ E +S K E +++ K K
Sbjct: 346 AKVHSPHKTESSKREIEDSLKQELYNKDEKIKSSIEKKQNEYKESLVQDKKEIIDVKDIK 405
Query: 339 IQQSSL----------TWTEKYRPKTPNEIVGNQ---QLVKQLHTWLAHWNEKFLDTGTK 385
IQ +SL EKYRPKT +I+G Q K++HTWL +W++ +G
Sbjct: 406 IQMNSLQDISGNIPVQALVEKYRPKTMKQILGQQGDKSNAKKIHTWLMNWHKN--QSGQV 463
Query: 386 RNGK-----KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK 440
++ + K ++ + KAA+LSG PG+GKTT ++VC LGF IE NASD+R K +
Sbjct: 464 KHTRPGPWAKDDNGAFFKAALLSGPPGIGKTTTVQVVCNELGFDLIEFNASDTRSKKLLQ 523
Query: 441 ISKGIGGSNANSIKELVSNEALSANM-DRSKHP--KTVLIMDEVDGMSAG-DRGGIADLI 496
+ EL+SN + D P K VL+MDEVDGM+ DRGG+ +LI
Sbjct: 524 ----------EEVSELLSNTTIKNYFKDVKSKPSSKHVLLMDEVDGMAGNEDRGGLQELI 573
Query: 497 ASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEI 556
IK + IPI+CICNDR + K+++L NY DLRF KPR ++I + + E ++++
Sbjct: 574 TLIKSTDIPIVCICNDRNNPKMRTLSNYTFDLRFPKPRLEQIRGAMKSMCFKENIQISNE 633
Query: 557 ALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGF 616
L+ L + N DIR IN L + ++ + KD + P+ V K+F
Sbjct: 634 DLDRLIESTNQDIRQVINHLALFVGQTGSQEKNEKKH----INKDLRLGPWDVVKKVFSV 689
Query: 617 NGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGD 675
K + + ++ +L D ++ PL +QENY+ P ++E+ L +A +AESI+ GD
Sbjct: 690 EEHKHMSISDKSNLFFHDYNIAPLFVQENYLMVIP-QVPKNEL--LGRVAESAESIALGD 746
Query: 676 IFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKN 735
+ IR N W L + S +IP M G G+ N F WLG+NS GK
Sbjct: 747 VVEKSIRSNNAWSLLPIQAYYSSVIPGTAMSGHI----GGQIN---FPAWLGRNSKTGKL 799
Query: 736 LRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPLRV 777
RL++++ H LA+ SK + + LDY L + PL V
Sbjct: 800 NRLMQEITLHARLATGASK---EAINLDYIRPLRNTILRPLAV 839
>gi|301093002|ref|XP_002997350.1| replication factor C subunit, putative [Phytophthora infestans
T30-4]
gi|262110748|gb|EEY68800.1| replication factor C subunit, putative [Phytophthora infestans
T30-4]
Length = 893
Score = 314 bits (805), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 250/737 (33%), Positives = 363/737 (49%), Gaps = 114/737 (15%)
Query: 81 DGKSVRSSPLKKFHKADDDDDDF-VPPS---VKKNSVGATPSKKLKSGSGRAVAQKSVDI 136
+G S R +P +K + D D DF + PS VK+ + P K+L+ ++V
Sbjct: 101 NGSSKRKAPAQKKAQRVDSDSDFEMQPSDNEVKEVTPKKEPLKRLR---------RAVKA 151
Query: 137 DDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGE-K 195
D DE+E++ + + K + + S PA + + E+ +G K
Sbjct: 152 DSDEDEEMPEVKPEAK-----KEVKIESKQPATSSSKRTA----TDDSEQTTVKQEGALK 202
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA-- 253
+VP CL G TF SG L+SL RE+A L+K GG + S+++ T YL+ +
Sbjct: 203 KVPAPCSGCLDGKTFAFSGVLESLSREDAVHLVKSCGGSIAISITRSTKYLVIGSTLEQG 262
Query: 254 -----GAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQ 308
G+K +A LT++ +++I + A AQ
Sbjct: 263 GNVTDGSKYKEAVAKNVRILTQNEFYNLITEA----ATAQ-------------------- 298
Query: 309 NIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLT---WTEKYRPKTPNEIVGNQQLV 365
+ + +A KA I + +T A KG +S+ WT+KY+P+T N ++GN +L
Sbjct: 299 --QTQDLAAEKAKI-KAETGALKTSSKGNQKLSTSINDELWTDKYKPQTLNHMIGNIELG 355
Query: 366 KQLHTWLAHWNEKFLDTGTKR--NGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423
K+L TWL W E GTK+ K ++ K +LSG PG+GKTT A LV + GF
Sbjct: 356 KKLKTWLLDW-EAMHVKGTKKVPFSTKLSENRGAKTVLLSGPPGIGKTTIANLVARECGF 414
Query: 424 QAIEVNASDSRGKADAKIS-KGIGGSNANSIKELVSNEALSANMDRSKH-PKTVLIMDEV 481
E+NASD+R K + K + G+ A + A S H + V+IMDEV
Sbjct: 415 ACTELNASDTRSKKMLQTGLKDVLGTQA------LQFGAASGEFKEKMHLARRVIIMDEV 468
Query: 482 DGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
DGMS GDRGG A+LI +K SK PIICICNDR SQK++SL N+ DLR R+P K +I KR
Sbjct: 469 DGMSGGDRGGTAELIQLLKKSKTPIICICNDRQSQKVRSLANHSFDLRMRRPTKVQIGKR 528
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD 601
LM+I EGL + + A+EE ADR DIR + Q+Q L+ + I Y D+ KD
Sbjct: 529 LMEIGLNEGLHMEKNAVEEAADRCGNDIRQLLTQMQRWRLTTTKITYADMVNPSSQHNKD 588
Query: 602 ED--ISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYI----NYRPSSAGR 655
E ++PF+A ++F +L D R + D DL+PL++QENYI N R SS
Sbjct: 589 ESLRLNPFSATQQIF---QRELSFDARNEAYFVDYDLMPLMVQENYIQSIMNNRRSS--- 642
Query: 656 DEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL---SQSSSLASCIIPAALMHGQRETL 712
DE L A+E IS+ D+ N +R Q+W L + ++ +C+ A + G E
Sbjct: 643 DE--NLEAAMHASEFISESDLLNTYVRVEQRWDLLTKQAAMNVGACVYSAGFI-GHPE-- 697
Query: 713 EQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLT 772
F WLGKNS+ K+ RLL +L A R+ +RLDY +
Sbjct: 698 ---------FSKWLGKNSSASKSKRLLSELSVRMRAHASG--SREVIRLDYVPYM----- 741
Query: 773 EPLRVLPKDELLRKLLS 789
K+ LL+KLLS
Sbjct: 742 -------KEILLKKLLS 751
>gi|71018701|ref|XP_759581.1| hypothetical protein UM03434.1 [Ustilago maydis 521]
gi|46099339|gb|EAK84572.1| hypothetical protein UM03434.1 [Ustilago maydis 521]
Length = 950
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 203/601 (33%), Positives = 306/601 (50%), Gaps = 48/601 (7%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P + G K +P+G P+CL GLT V +G L+S+ R+EA DL KR+G R+T + S KT+Y++
Sbjct: 249 PANPGSKAIPQGKPNCLTGLTLVFTGELESISRDEASDLAKRYGARITSAPSSKTSYVIV 308
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQ 308
E K ++ L ED D+IR + A L +K+ Q
Sbjct: 309 GEGAGPKKLDLIRKNNIKTLNEDEFLDLIRT-----------------RGAGELDEKAKQ 351
Query: 309 NIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQL 368
I+A+ E K++ P S++ WT KY P ++VGN+ V++L
Sbjct: 352 KIKAEEQKIK----EVAKSMGPPKDGNANPADLSNMLWTTKYAPTQMKDLVGNKAAVEKL 407
Query: 369 HTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428
+WL W + + K N +A ++SG PG+GKTT+A LV +M G+ +E
Sbjct: 408 ASWLKAWPDSYRSNFKKPGPTGMN---VYRAVLISGPPGIGKTTSAHLVAKMEGYSPLEF 464
Query: 429 NASDSRGK--ADAKISKGIGGSNANSIKELVSN-EALSANMDRSKHPKTVLIMDEVDGMS 485
NASD+R K + + I + +S V+ + SA + R H +TVLIMDEVDGMS
Sbjct: 465 NASDARSKKLVEGMLQDTINNKSLDSWYSSVAKPSSWSAGLPRI-HDRTVLIMDEVDGMS 523
Query: 486 AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQI 545
GDRGG+ + A IK +K+PIICICNDR +QK++ + +L FRKP ++ R++ I
Sbjct: 524 GGDRGGVGAINALIKKTKVPIICICNDRRNQKMRPFEHTTFNLTFRKPDANQVKSRMLSI 583
Query: 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDIS 605
A E L++ + +L + DIR IN L LS + +D+ + +AK +
Sbjct: 584 AFKEKLKIPGEVMAQLIEAAQSDIRSVINMLSTWKLSNDSMDFDESKALGAENAKPGLHT 643
Query: 606 PFTAVDKLFG---FNG-GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSA-----GRD 656
PF+ +L FN K ++++ DL D VPL++ ENY+ RP A R
Sbjct: 644 PFSLYGELSAPGMFNANSKKTLNDKADLYFQDHSFVPLMVAENYVKARPVLASKEVGARQ 703
Query: 657 EVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQG 715
++K L L+ +A+ESISDGD+ + I +Q W L ++AS + P +L++G E
Sbjct: 704 QLKHLELLRKASESISDGDLVDRMIHGGEQHWSLMPLHAIASSVRPCSLIYGGTEG---- 759
Query: 716 ERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEP 774
F F WLG+NS + R + DL L S R LR Y + L +P
Sbjct: 760 --GFPSFPAWLGQNSKQQRLTRAVVDLQAKMRLVCSGS---RHDLRQHYLPSMWSMLIQP 814
Query: 775 L 775
L
Sbjct: 815 L 815
>gi|239610551|gb|EEQ87538.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis
ER-3]
Length = 1068
Score = 313 bits (802), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 213/627 (33%), Positives = 322/627 (51%), Gaps = 53/627 (8%)
Query: 181 MNFGER-KDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
NF +R +DP KE+P GA +CL GL+FV +G LD+L REE + L+KR+GG+VT
Sbjct: 308 FNFAQRSRDPVTSDTKELPVGAENCLAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSGP 367
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM----KALAQAESKKSV 295
S KT+Y++ D K ++ G + EDGLF++IR KA Q +KK +
Sbjct: 368 SSKTSYVVLGNDAGPKKLETIRKFGLKTINEDGLFELIRRLPANGGDGKAAEQHAAKKKL 427
Query: 296 EK-----VAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKY 350
E+ +AA + ++ E K +A A + AS K S WT +Y
Sbjct: 428 EEQRIKDMAAEIDRE-----EKKRAAASMASTSKTTNGAS----KPAPAAVDSRLWTSRY 478
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
P + + I GN+ V++L +WL +W + K+ GK + +A ++ G PG+GK
Sbjct: 479 APTSLSMICGNKGAVEKLQSWLRNWRNSAM-ADFKKGGK--DGTGLYRAVMIHGPPGIGK 535
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRS 469
TTAA LV ++ + +E NASD+R K+ + G+ G + S++ S E S
Sbjct: 536 TTAAHLVAKLENYDVVESNASDTRSKS--LVETGLQGVLDTTSLQGYFSGEGKRVE---S 590
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
VLIMDEVDGMSAGDRGG+ L A K ++IP+I ICN+R K++ + DL+
Sbjct: 591 GKKNLVLIMDEVDGMSAGDRGGVGALAAVAKKTRIPMILICNERRLPKMRPFDSVTFDLQ 650
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
FR+P ++I RL I EGL++ L+ L + DIR IN L L + YD
Sbjct: 651 FRRPTVEQIRARLSTICYREGLKITPQVLDNLIQGTHADIRQVINMLSTAKLDQQALDYD 710
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLFGF----NGGKLRMDERIDLSMSDPDLVPLLIQENY 645
+Q + K + P+ V K+ + ++E+++L +D + L++QENY
Sbjct: 711 QGKQMSKAWEKHVILKPWDIVSKILSAQMFSQSSQTSLNEKVELYFNDHEFSYLMLQENY 770
Query: 646 INYRPSSA----GRDE-VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCI 699
+N +PS+A GR++ K L L AA+SISDGD+ + I QQW L + ++ S +
Sbjct: 771 LNTKPSAANSYQGREQKFKLLELADNAAQSISDGDLVDRMIHGTQQQWSLMPTHAVFSFV 830
Query: 700 IPAALMHGQRETLEQGERNFNR---FGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGR 756
PA+ + G N R F WLG NS GK R ++++ H +S R
Sbjct: 831 RPASFVAG----------NMTRQPAFTSWLGNNSKQGKMARQIKEIQGHMRL--RSSGDR 878
Query: 757 DTLRLDYFSLLLKQLTEPLRVLPKDEL 783
+R Y L +L PL+V KD +
Sbjct: 879 HEIRQQYLPALWNKLVRPLQVHGKDAV 905
>gi|327349015|gb|EGE77872.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis
ATCC 18188]
Length = 1065
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 213/627 (33%), Positives = 322/627 (51%), Gaps = 53/627 (8%)
Query: 181 MNFGER-KDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
NF +R +DP KE+P GA +CL GL+FV +G LD+L REE + L+KR+GG+VT
Sbjct: 305 FNFAQRSRDPVTSDTKELPVGAENCLAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSGP 364
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM----KALAQAESKKSV 295
S KT+Y++ D K ++ G + EDGLF++IR KA Q +KK +
Sbjct: 365 SSKTSYVVLGNDAGPKKLETIRKFGLKTINEDGLFELIRRLPANGGDGKAAEQHAAKKKL 424
Query: 296 EK-----VAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKY 350
E+ +AA + ++ E K +A A + AS K S WT +Y
Sbjct: 425 EEQRIKDMAAEIDRE-----EKKRAAASMASTSKTTNGAS----KPAPAAVDSRLWTSRY 475
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
P + + I GN+ V++L +WL +W + K+ GK + +A ++ G PG+GK
Sbjct: 476 APTSLSMICGNKGAVEKLQSWLRNWRNSAM-ADFKKGGK--DGTGLYRAVMIHGPPGIGK 532
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRS 469
TTAA LV ++ + +E NASD+R K+ + G+ G + S++ S E S
Sbjct: 533 TTAAHLVAKLENYDVVESNASDTRSKS--LVETGLQGVLDTTSLQGYFSGEGKRVE---S 587
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
VLIMDEVDGMSAGDRGG+ L A K ++IP+I ICN+R K++ + DL+
Sbjct: 588 GKKNLVLIMDEVDGMSAGDRGGVGALAAVAKKTRIPMILICNERRLPKMRPFDSVTFDLQ 647
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
FR+P ++I RL I EGL++ L+ L + DIR IN L L + YD
Sbjct: 648 FRRPTVEQIRARLSTICYREGLKITPQVLDNLIQGTHADIRQVINMLSTAKLDQQALDYD 707
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLFGF----NGGKLRMDERIDLSMSDPDLVPLLIQENY 645
+Q + K + P+ V K+ + ++E+++L +D + L++QENY
Sbjct: 708 QGKQMSKAWEKHVILKPWDIVSKILSAQMFSQSSQTSLNEKVELYFNDHEFSYLMLQENY 767
Query: 646 INYRPSSA----GRDE-VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCI 699
+N +PS+A GR++ K L L AA+SISDGD+ + I QQW L + ++ S +
Sbjct: 768 LNTKPSAANSYQGREQKFKLLELADNAAQSISDGDLVDRMIHGTQQQWSLMPTHAVFSFV 827
Query: 700 IPAALMHGQRETLEQGERNFNR---FGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGR 756
PA+ + G N R F WLG NS GK R ++++ H +S R
Sbjct: 828 RPASFVAG----------NMTRQPAFTSWLGNNSKQGKMARQIKEIQGH--MRLRSSGDR 875
Query: 757 DTLRLDYFSLLLKQLTEPLRVLPKDEL 783
+R Y L +L PL+V KD +
Sbjct: 876 HEIRQQYLPALWNKLVRPLQVHGKDAV 902
>gi|301111033|ref|XP_002904596.1| replication factor C subunit 1 [Phytophthora infestans T30-4]
gi|262095913|gb|EEY53965.1| replication factor C subunit 1 [Phytophthora infestans T30-4]
Length = 770
Score = 312 bits (800), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 224/618 (36%), Positives = 314/618 (50%), Gaps = 91/618 (14%)
Query: 195 KEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA- 253
K+VP CL G TF SG L+SL RE+A L+K GG V S+++ T YL+ +
Sbjct: 79 KKVPAPCSGCLDGKTFAFSGVLESLSREDAVHLVKSCGGSVANSITRSTKYLVIGSTLEQ 138
Query: 254 ------GAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSP 307
G+K +A LT++ +++I + A AQ
Sbjct: 139 GGNVTDGSKYKEAVAKNVRILTQNEFYNLITEA----ATAQ------------------- 175
Query: 308 QNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLT---WTEKYRPKTPNEIVGNQQL 364
+ + +A KA I + +T A KG +S+ WT+KY+P+T N ++GN +L
Sbjct: 176 ---QTQDLAAEKAKI-KAETGALKTSSKGNQKLNTSINDELWTDKYKPQTLNHMIGNIEL 231
Query: 365 VKQLHTWLAHWNEKFLDTGTKR--NGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422
K+L TWL W E GTK+ K ++ K +LSG PG+GKTT A LV + G
Sbjct: 232 GKKLKTWLLDW-EAMHVKGTKKVPFSTKLSENRGAKTVLLSGPPGIGKTTIANLVARECG 290
Query: 423 FQAIEVNASDSRGKADAKIS-KGIGGSNANSIKELVSNEALSANMDRSKH-PKTVLIMDE 480
F E+NASD+R K + K + G+ A + A S H + V+IMDE
Sbjct: 291 FACTELNASDTRSKKMLQTGLKDVLGTQA------LQFGAASGEFKEKMHLARRVIIMDE 344
Query: 481 VDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK 540
VDGMS GDRGG A+LI +K SK PIICICNDR SQK++SL N+ DLR R+P K +I K
Sbjct: 345 VDGMSGGDRGGTAELIQLLKKSKTPIICICNDRQSQKVRSLANHSFDLRMRRPTKVQIGK 404
Query: 541 RLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAK 600
RLM+I EGL + + A+EE ADR DIR + Q+Q L+ + I Y D+ K
Sbjct: 405 RLMEIGLNEGLHMEKNAIEEAADRCGNDIRQLLTQMQRWRLTTTKITYADMVNPSSQHNK 464
Query: 601 DED--ISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYI----NYRPSSAG 654
DE ++PF+A ++F +L D R + D DL+PL++QENYI N R SS
Sbjct: 465 DESLRLNPFSATQQIF---QRELSFDARNEAYFVDYDLMPLMVQENYIQSIMNNRRSS-- 519
Query: 655 RDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL---SQSSSLASCIIPAALMHGQRET 711
DE L A+E IS+ D+ N +R Q+W L + ++ +C+ A + G E
Sbjct: 520 -DE--NLEAAMHASEFISESDLLNTYVRVEQRWDLLTKQAAMNVGACVYSAGFI-GHPE- 574
Query: 712 LEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQL 771
F WLGKNS+ K+ RLL +L A R+ +RLDY +
Sbjct: 575 ----------FSKWLGKNSSASKSKRLLSELSVRMRAHASG--SREVIRLDYVPYM---- 618
Query: 772 TEPLRVLPKDELLRKLLS 789
K+ LL+KLLS
Sbjct: 619 --------KEILLKKLLS 628
>gi|325093242|gb|EGC46552.1| chromosome transmission fidelity protein [Ajellomyces capsulatus
H88]
Length = 1071
Score = 312 bits (800), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 210/624 (33%), Positives = 319/624 (51%), Gaps = 47/624 (7%)
Query: 181 MNFGER-KDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
NF +R +DP G K++P GA +CL GL+FV +G LD+L REE + L+KR+GG+VT +
Sbjct: 309 FNFAQRSRDPVTSGSKDLPVGAENCLAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSAP 368
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR---------ASKPMKALAQAE 290
S KTNY++ D K ++ G + EDGLF++IR + A +
Sbjct: 369 SSKTNYVVLGSDAGPKKLETIRKFGLKSINEDGLFELIRRLPANGGDGKAAEKHAAKKKL 428
Query: 291 SKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKY 350
+ ++ +AA + ++ + A S K+ + +PA Q WT KY
Sbjct: 429 EDQRIKDMAAEIDREEKKKAAASIASTTKS----LNGAGNPAP-----AQVDDRLWTSKY 479
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
P + + I GN+ V++L TWL +W + K+ GK + +A ++ G PG+GK
Sbjct: 480 APTSLSMICGNKGAVEKLQTWLRNWRTSSM-ADFKKGGK--DGTGIYRAVMIHGPPGIGK 536
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRS 469
TTAA LV ++ + +E NASD+R K+ + G+ G + S++ S E S
Sbjct: 537 TTAAHLVAKLENYDVVESNASDTRSKS--LVETGLRGVLDTTSLQGYFSGEGKKVE---S 591
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
VLIMDEVDGMSAGDRGG+ L A K ++IP+I ICN+R K++ + DL
Sbjct: 592 GKKNLVLIMDEVDGMSAGDRGGVGALAAVAKKTRIPMILICNERRLPKMRPFDSVTFDLP 651
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
FR+P ++I RL I EGL++ L+ L + DIR IN L L + YD
Sbjct: 652 FRRPTVEQIRARLSTICYREGLKIPPQVLDNLIQGTHADIRQVINMLSTAKLDQPTLDYD 711
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENY 645
+Q + K + P+ V K+ + ++E+I+L +D + L++QENY
Sbjct: 712 QGKQMSKAWEKHIILKPWDIVGKILSAQMFSKSSETTLNEKIELYFNDHEFSYLMLQENY 771
Query: 646 INYRPSSA----GRDE-VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCI 699
+N RPS+A GR++ K L L AA+SISDGD+ + I QQW L + ++ S +
Sbjct: 772 LNTRPSAANSYQGREQKFKLLELADNAAQSISDGDLVDRMIHGSQQQWSLMPTHAVFSFV 831
Query: 700 IPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTL 759
PA+ M G + F WLG NS GK R ++++ H +S R +
Sbjct: 832 RPASFMAGNMT-------DRPAFTSWLGNNSKQGKMARQIKEIQGHMRL--RSSGDRHEI 882
Query: 760 RLDYFSLLLKQLTEPLRVLPKDEL 783
R Y L +L PL+V KD +
Sbjct: 883 RQQYLPALWNKLVLPLQVQGKDSV 906
>gi|261195366|ref|XP_002624087.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis
SLH14081]
gi|239587959|gb|EEQ70602.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis
SLH14081]
Length = 1065
Score = 312 bits (799), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 213/627 (33%), Positives = 322/627 (51%), Gaps = 53/627 (8%)
Query: 181 MNFGER-KDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
NF +R +DP KE+P GA +CL GL+FV +G LD+L REE + L+KR+GG+VT
Sbjct: 305 FNFAQRSRDPVTSDTKELPVGAENCLAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSGP 364
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM----KALAQAESKKSV 295
S KT+Y++ D K ++ G + EDGLF++IR KA Q +KK +
Sbjct: 365 SSKTSYVVLGNDAGPKKLETIRKFGLKTINEDGLFELIRRLPANGGDGKAAEQHAAKKKL 424
Query: 296 EK-----VAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKY 350
E+ +AA + ++ E K +A A + AS K S WT +Y
Sbjct: 425 EEQRIKDMAAEIDRE-----EKKRAAASMASTSKTTNGAS----KPAPAAVDSRLWTSRY 475
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
P + + I GN+ V++L +WL +W + K+ GK + +A ++ G PG+GK
Sbjct: 476 APTSLSMICGNKGAVEKLQSWLRNWRNSAM-ADFKKGGK--DGTGLYRAVMIHGPPGIGK 532
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRS 469
TTAA LV ++ + +E NASD+R K+ + G+ G + S++ S E S
Sbjct: 533 TTAAHLVAKLENYDVVESNASDTRSKS--LVETGLQGVLDTTSLQGYFSGEGKRVE---S 587
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
VLIMDEVDGMSAGDRGG+ L A K ++IP+I ICN+R K++ + DL+
Sbjct: 588 GKKNLVLIMDEVDGMSAGDRGGVGALAAVAKKTRIPMILICNERRLPKMRPFDSVTFDLQ 647
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
FR+P ++I RL I EGL++ L+ L + DIR IN L L + YD
Sbjct: 648 FRRPTVEQIRARLSTICYREGLKITPQVLDNLIQGTHADIRQVINMLSTAKLDQQALDYD 707
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLFGF----NGGKLRMDERIDLSMSDPDLVPLLIQENY 645
+Q + K + P+ V K+ + ++E+++L +D + L++QENY
Sbjct: 708 QGKQMSKAWEKHVILKPWDIVSKILSAQMFSQSSQTSLNEKVELYFNDHEFSYLMLQENY 767
Query: 646 INYRPSSA----GRDE-VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCI 699
+N +PS+A GR++ K L L AA+SISDGD+ + I QQW L + ++ S +
Sbjct: 768 LNTKPSAANSYQGREQKFKLLELADNAAQSISDGDLVDRMIHGTQQQWSLMPTHAVFSFV 827
Query: 700 IPAALMHGQRETLEQGERNFNR---FGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGR 756
PA+ + G N R F WLG NS GK R ++++ H +S R
Sbjct: 828 RPASFVAG----------NMTRQPAFTSWLGNNSKQGKMARQIKEIQGHMRL--RSSGDR 875
Query: 757 DTLRLDYFSLLLKQLTEPLRVLPKDEL 783
+R Y L +L PL+V KD +
Sbjct: 876 HEIRQQYLPALWNKLVRPLQVHGKDAV 902
>gi|393234881|gb|EJD42440.1| DNA replication factor C, large subunit [Auricularia delicata
TFB-10046 SS5]
Length = 814
Score = 312 bits (799), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 215/604 (35%), Positives = 313/604 (51%), Gaps = 37/604 (6%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P G K VPEG P+CL GLTFV +G L SL REEA+DL KR+GGRVTG+ S +T+Y++
Sbjct: 133 PSAPGSKPVPEGEPNCLAGLTFVFTGELSSLAREEAQDLAKRYGGRVTGAPSGRTSYVIV 192
Query: 249 DEDIAGAKSTKAKE-LGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSP 307
+ AGA KA E G P L EDG +I K E + E+ ++
Sbjct: 193 GAN-AGASKIKALEKHGIPTLDEDGFLALIGTRKGFLDEKTKEKLRKEEEKLKEQVRELE 251
Query: 308 QNIEAKSTSAPKAPIERM---KTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL 364
+ E K+T A K ++ K V P+++ WT KY P EI GN+
Sbjct: 252 ER-ERKATRAAKKALKEGTGGKKVYDPSEQ----------LWTTKYAPTKLQEICGNKAT 300
Query: 365 VKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424
V++L WL+ W + + +G K+ GK + + +A ++SG PG+GKTT A LV +M G+
Sbjct: 301 VEKLRLWLSAW-QASMKSGFKKPGK--DGMNVFRAVLISGPPGVGKTTTAHLVAKMEGYT 357
Query: 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGM 484
+E+NASD+R K I G N + + E + + + +T LIMDEVDGM
Sbjct: 358 PLELNASDARSKK--LIENGANIDNRSLDGWMAGEEGKTNAVGVAITERTCLIMDEVDGM 415
Query: 485 SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544
SAGDRGG+ L A IK +K+PIICI ND SQKL+ L ++ F KP+ Q+I R+M
Sbjct: 416 SAGDRGGVGALNALIKRTKVPIICIANDGRSQKLQPLKATTYNMTFSKPQVQQIRSRIMT 475
Query: 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDI 604
I EG++V +++L DIR +N L LS + +D+ + + K +
Sbjct: 476 IVMREGMKVPPNVIDQLISGAQSDIRQVLNMLSTWKLSNDTMDFDEGKHLTKMNEKYSVM 535
Query: 605 SPFTAVDKLFG---FNG-GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDE--- 657
+PF + K+ G F+ + + E+++ D VPL +QENY+ P+ +E
Sbjct: 536 TPFNVITKVLGPYMFSSTSRETLSEKMEYYFHDHSFVPLFMQENYLRSTPARLQGEEGPY 595
Query: 658 --VKRLSLIARAAESISDGDIFNVQIRRN-QQWQLSQSSSLASCIIPAALMHGQRETLEQ 714
K L L+ +AA S+SD D+ + I N Q W L ++ S + PA MHG
Sbjct: 596 RDAKHLELMEKAASSLSDADLVDAMIHGNDQHWSLMPLHAVVSTVRPAYHMHGH--GAHW 653
Query: 715 GERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTE 773
G ++ RF WLG+NS K R L ++ L + SK +RL Y L L
Sbjct: 654 GGQDGIRFPAWLGQNSKEQKLRRQLAEVQIKMRLRATGSKA---EVRLGYLPTLHNALVR 710
Query: 774 PLRV 777
PL++
Sbjct: 711 PLQL 714
>gi|240275879|gb|EER39392.1| chromosome transmission fidelity factor [Ajellomyces capsulatus
H143]
Length = 1071
Score = 311 bits (798), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 210/624 (33%), Positives = 319/624 (51%), Gaps = 47/624 (7%)
Query: 181 MNFGER-KDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
NF +R +DP G K++P GA +CL GL+FV +G LD+L REE + L+KR+GG+VT +
Sbjct: 309 FNFAQRSRDPVTSGSKDLPVGAENCLAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSAP 368
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR---------ASKPMKALAQAE 290
S KTNY++ D K ++ G + EDGLF++IR + A +
Sbjct: 369 SSKTNYVVLGSDAGPKKLETIRKFGLKSINEDGLFELIRRLPANGGDGKAAEKHAAKKKL 428
Query: 291 SKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKY 350
+ ++ +AA + ++ + A S K+ + +PA Q WT KY
Sbjct: 429 EDQRIKDMAAEIDREEKKKAAASIASTTKS----LNGAGNPAP-----AQVDDRLWTSKY 479
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
P + + I GN+ V++L TWL +W + K+ GK + +A ++ G PG+GK
Sbjct: 480 APTSLSMICGNKGAVEKLQTWLRNWRTSSM-ADFKKGGK--DGTGIYRAVMIHGPPGIGK 536
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRS 469
TTAA LV ++ + +E NASD+R K+ + G+ G + S++ S E S
Sbjct: 537 TTAAHLVAKLENYDVVESNASDTRSKS--LVETGLRGVLDTTSLQGYFSGEGKKVE---S 591
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
VLIMDEVDGMSAGDRGG+ L A K ++IP+I ICN+R K++ + DL
Sbjct: 592 GKKNLVLIMDEVDGMSAGDRGGVGALAAVAKKTRIPMILICNERRLPKMRPFDSVTFDLP 651
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
FR+P ++I RL I EGL++ L+ L + DIR IN L L + YD
Sbjct: 652 FRRPTVEQIRARLSTICYREGLKIPPQVLDNLIQGTHADIRQVINMLSTAKLDQPTLDYD 711
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENY 645
+Q + K + P+ V K+ + ++E+I+L +D + L++QENY
Sbjct: 712 QGKQMSKAWEKHIILKPWDIVGKILSAQMFSKSSETTLNEKIELYFNDHEFSYLMLQENY 771
Query: 646 INYRPSSA----GRDE-VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCI 699
+N RPS+A GR++ K L L AA+SISDGD+ + I QQW L + ++ S +
Sbjct: 772 LNTRPSAANSYQGREQKFKLLELADNAAQSISDGDLVDRMIHGSQQQWSLMPTHAVFSFV 831
Query: 700 IPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTL 759
PA+ M G + F WLG NS GK R ++++ H +S R +
Sbjct: 832 RPASFMAGNMT-------DRPAFTSWLGNNSKQGKMARQIKEIQGHMRL--RSSGDRHEI 882
Query: 760 RLDYFSLLLKQLTEPLRVLPKDEL 783
R Y L +L PL+V KD +
Sbjct: 883 RQQYLPALWNKLVLPLQVQGKDSV 906
>gi|308800020|ref|XP_003074791.1| replication factor C 110 kDa subunit (ISS) [Ostreococcus tauri]
gi|116061331|emb|CAL52049.1| replication factor C 110 kDa subunit (ISS) [Ostreococcus tauri]
Length = 553
Score = 311 bits (798), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 167/432 (38%), Positives = 262/432 (60%), Gaps = 22/432 (5%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WT+++ P+T ++VGN + L +WL W+ + + K +K ++SG
Sbjct: 66 WTDEFSPRTVTDLVGNSSAINVLRSWLLQWSARKFNVQLKGQDRK--------CILISGP 117
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKTT A L+C+ LG Q + +NASDSRGK+ K+ GI G+ A++++E V+N+ + +
Sbjct: 118 PGVGKTTTAVLLCKELGLQTLNINASDSRGKS-GKVVDGIAGTLASAVREFVTNKCIGS- 175
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
D + ++ LIMDEVDGM+ GDRGG+++LI IK ++IPIICICNDRYSQKLK+L NYC
Sbjct: 176 -DSEQTVRSALIMDEVDGMAGGDRGGLSELIDIIKQTRIPIICICNDRYSQKLKTLANYC 234
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV 585
DL F++P K +I K ++Q+AN++ L++++ +++ L + N D+R INQLQ S+ +
Sbjct: 235 VDLPFQRPNKLQIRKYVVQLANSKRLQIDQDSVDSLIEANNNDLRSIINQLQLWSMGAIL 294
Query: 586 IKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQE 643
+ R + KD + F A+D +F +G +D R+ LS + DL+ L + E
Sbjct: 295 ESKETSRVK-----KDVSLGVFQAIDVMFRPSVHGT---LDARLSLSFTHGDLLSLFVHE 346
Query: 644 NYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAA 703
NY RP + D ++RL +A AA +S+GD+F I R Q W + S+++ + ++P++
Sbjct: 347 NYPCMRPKDSVSD-LQRLVHMAAAASRVSEGDVFASTISRTQNWSILPSANVIASVLPSS 405
Query: 704 LMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDY 763
+ G RE QGERN +RF LG+ S+ K+ RLL H H AS + L Y
Sbjct: 406 AVSGAREISAQGERNTHRFPSCLGRISSKSKSQRLLHKTHMHVCASGILRTSAREFCLRY 465
Query: 764 FSLLLKQLTEPL 775
+L+ + LT PL
Sbjct: 466 MNLVRRLLTLPL 477
>gi|91081967|ref|XP_967820.1| PREDICTED: similar to replication factor C large subunit, putative
[Tribolium castaneum]
gi|270007366|gb|EFA03814.1| hypothetical protein TcasGA2_TC013927 [Tribolium castaneum]
Length = 985
Score = 311 bits (797), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 215/654 (32%), Positives = 324/654 (49%), Gaps = 89/654 (13%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + R +P H G KE+P+G P+CL L F+ +G LDSL+ EE ++IK+HGGRV +V
Sbjct: 227 YQRYLNRGEPKHLGMKELPKGKPNCLQNLCFLRTGVLDSLDSEEFANIIKQHGGRVVHAV 286
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMI---------------------- 277
SKK NY++ + AK KA+ P ++ED L DMI
Sbjct: 287 SKKVNYVVVGAEPGPAKLAKAESYNIPNISEDELLDMILTKSGMEPKYCKKNTSCDSEDL 346
Query: 278 -----RASKPMKALAQ---------AESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIE 323
+KP K E K SV+K + P K Q I++++ S+ +
Sbjct: 347 GIDLNHETKPSKEKISNKTEPKKETPEKKSSVKKQNGTAPSKIEQEIKSETLSSNSFYSQ 406
Query: 324 RMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQ----QLVKQLHTWLAHWNEKF 379
+ S + + ++ L+ EKY+P+T ++G Q L K H WL +W K
Sbjct: 407 PGTSKVSESTKIENKVEAVQLSLPEKYKPQTLRAVIGQQGDSSNLAKLKH-WLENWY-KN 464
Query: 380 LDTGTKRN-------GKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432
D K+ K++D + K A+LSG PG+GKTT A LV + LG +E NASD
Sbjct: 465 QDPKVKKTLARPSPWSTKKDDGAYFKCALLSGPPGVGKTTTATLVAKELGLDIVEFNASD 524
Query: 433 SRGKADAKISKGIGGSNANSIKELVSNEALSA------NMDRSKHPKTVLIMDEVDGMSA 486
+R K + +L+S + ++ N++R++ VL+MDEVDGM+
Sbjct: 525 TRSKKLLH----------EEVAQLLSTKTIAGYATGQPNVNRNR----VLLMDEVDGMAG 570
Query: 487 G-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQI 545
DRGGI +LI IK S +PIIC+CNDR QK++SLVNYC DL+F KP+ ++I +M I
Sbjct: 571 NEDRGGIQELIQLIKNSSVPIICMCNDRNHQKIRSLVNYCFDLKFTKPKLEQIRGAMMSI 630
Query: 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDIS 605
E ++V+ AL E+ D+R +N L + + I + + +S KD +
Sbjct: 631 CCKENIDVSTQALTEIIAGTGCDVRQTLNHLALLGSTKGEITVEVAEKESKASKKDTVMG 690
Query: 606 PFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLI 664
P+ +F + K + + +R L D L PL IQENY+ +P + ++ + + +L
Sbjct: 691 PWEVCRTVFTKSEHKDMSVADRARLFFFDYSLGPLFIQENYLRVQPEGSKKEGLLKAAL- 749
Query: 665 ARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFN---R 721
A+SIS GDI +IRR W L +S + S +IP M G +FN
Sbjct: 750 --TADSISVGDIIESKIRRTNNWALLESQAFFSSVIPGHYMSG----------HFNSQIN 797
Query: 722 FGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F WLGKNS K RL+ +L H S + + ++LDY L + PL
Sbjct: 798 FPAWLGKNSKKNKFKRLISELQSHTRTS--ASASKMAVKLDYLVPLRNAIFTPL 849
>gi|357608191|gb|EHJ65870.1| putative replication factor C large subunit [Danaus plexippus]
Length = 989
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 214/649 (32%), Positives = 323/649 (49%), Gaps = 90/649 (13%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + R P H G KE+PEG+PDC +F+++G LDS ER++ I ++GG + +
Sbjct: 241 YQRYLNRSGPKHLGTKEMPEGSPDCFKDCSFLLTGVLDSFERDDVIAAITKYGGVIKTGI 300
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASK----PMKALAQAESKKSV 295
SKK +++ +D AK KA+E G + ED IR S P K + + KK
Sbjct: 301 SKKVTHVIAGDDAGPAKLAKAREFGIKIMNEDEFLQFIRDSSNKKTPPKDVKKESGKKKD 360
Query: 296 EKVAASLPK--KSPQNIE-----AKSTSAP----KAPIERMKTVA------SPAKRKGQN 338
+ K KSPQ+ E AK +P K+ ++ K + P K G+
Sbjct: 361 KSSEKKREKIKKSPQDKEINVNKAKVEESPRDIKKSEVKTNKVESKEESKEHPVKPVGRE 420
Query: 339 IQQ-------------SSLTWTEKYRPKTPNEIVGNQ---QLVKQLHTWLAHWNEKFLDT 382
I +SL W +KY+PK +I+G V +L WL W
Sbjct: 421 ISHDGELKKSCSTEVSNSLMWVDKYKPKNLKQIIGQHGEASNVNKLLNWLKKWY------ 474
Query: 383 GTKRNGK--------KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434
R K K +D +AA+LSG PG+GKTT LVC+ LGF +E+NASD+R
Sbjct: 475 -ANRKAKLPKPSPWAKNDDGGYYRAALLSGPPGVGKTTTVSLVCKELGFDTVELNASDTR 533
Query: 435 GKADAKISKGIGGSNANSIKELVSNEALSANMDR-----SKHPKTVLIMDEVDGMSAG-D 488
K K G EL+S L A + K VL+MDEVDGM+ D
Sbjct: 534 SKTLLKEQLG----------ELLSTNTLQAYATGCAGKGAVSKKHVLVMDEVDGMAGNED 583
Query: 489 RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
RGG+ +LI+ IK + +P+IC+CNDR S+K++SLVNYC DL+F +PR ++I +M I
Sbjct: 584 RGGLQELISLIKTTSVPVICMCNDRNSEKMRSLVNYCYDLKFARPRLEQIKSAMMSICFK 643
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFT 608
EG++++ AL +L DIR ++ L + L+ + +R KD + P+
Sbjct: 644 EGIKISPEALSQLIVSSGQDIRQTVHLLSVCASGLTSDEAKAVR-------KDIKMGPWE 696
Query: 609 AVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARA 667
A+ K+F K + + ++ DL D ++PL +QEN++N P + + R S +A
Sbjct: 697 AIRKVFSAEEHKTMSIIDKSDLFFCDYSIMPLFVQENFLNVTPHCPKNEILDRFS---KA 753
Query: 668 AESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLG 727
A+S+S GD+ +IR +Q W L + ++ S +IP + G Q F WLG
Sbjct: 754 ADSLSLGDLVEARIRGSQAWNLLPTQAMFSSVIPGHQLSGHVSGQMQ-------FPSWLG 806
Query: 728 KNSTMGKNLRLLEDLHFHHLASRKSKLG-RDTLRLDYFSLLLKQLTEPL 775
KNS K RL +++H H +R S G + ++ LDY + L +T PL
Sbjct: 807 KNSRANKMNRLCQEIHAH---TRLSTSGSKSSIFLDYSTHLRDAITNPL 852
>gi|170106533|ref|XP_001884478.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640824|gb|EDR05088.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 950
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 205/594 (34%), Positives = 311/594 (52%), Gaps = 34/594 (5%)
Query: 192 KGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDED 251
+G KEVP+GAPDCL GL+FV +G L S R+EA DL KR GGRV S KT+Y++ ++
Sbjct: 275 RGSKEVPDGAPDCLAGLSFVFTGELSSFSRDEAIDLAKRFGGRVVLQPSSKTDYVVLGDN 334
Query: 252 IAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIE 311
+K K+ L+ED +I K L ++KK +EK A + KK+ + +E
Sbjct: 335 AGPSKIAAIKKHKINTLSEDEFLGLIATRKGSGKLDD-KTKKKMEKEQAEI-KKAAKEME 392
Query: 312 AKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTW 371
+ E+ +A+ + G+ I S+ WT +Y P++ E+ GN+ V++L W
Sbjct: 393 KR---------EQKDHIAA---QSGKTIDPSTQLWTTRYAPQSLKEVCGNKSQVEKLQLW 440
Query: 372 LAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431
L W L +G K+ GK N + ++ +++GSPG+GKTT+A L ++ GF IE+NAS
Sbjct: 441 LHDWPNS-LKSGFKKPGK--NGMNVFRSVLITGSPGIGKTTSAHLCAKLEGFTPIELNAS 497
Query: 432 DSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG 491
D+R K K+ + N S+ ++ + ++ KT LIMDEVDGMSAGDRGG
Sbjct: 498 DARSK---KLVENGMNINNKSLDGYINGAHDTNSLGVQITDKTCLIMDEVDGMSAGDRGG 554
Query: 492 IADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGL 551
+ L A IK +KIPIICI NDR +QKLK LV +L F+KP+ I R++ IA E +
Sbjct: 555 VGALNALIKKTKIPIICIANDRQAQKLKPLVATTFNLTFQKPQVNSIRSRILTIAFKEKM 614
Query: 552 EVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVD 611
++ +++L DIR +N L LS + +D+ + + K +SPF
Sbjct: 615 KIPANVIDQLITGTQSDIRQVLNMLSTWKLSNDAMSFDEGKNLAKMNEKYSTMSPFDITS 674
Query: 612 KLFG----FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDE-----VKRLS 662
K+ G + + + E+++ D VPL IQENY+ +P+ E +K L
Sbjct: 675 KMLGPYLFSHTARETLGEKMEYYFQDHSFVPLFIQENYLKTQPAKLRNLEGPEKILKELE 734
Query: 663 LIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNR 721
L+ +AA SISDGD+ + I Q W L ++ S + P++ ++G G N
Sbjct: 735 LMDKAASSISDGDLVDALIHGPEQHWGLMPLHAVCSAVRPSSFLYGT--GAHYGGPNSMS 792
Query: 722 FGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F WLG+NS K R L D+ K + +R Y L + +PL
Sbjct: 793 FPQWLGQNSKQTKLNRQLGDVQIQ--MRLKVSGDKHEIRQSYIPALFPHIVKPL 844
>gi|348669616|gb|EGZ09438.1| hypothetical protein PHYSODRAFT_304972 [Phytophthora sojae]
Length = 887
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 221/619 (35%), Positives = 318/619 (51%), Gaps = 92/619 (14%)
Query: 195 KEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA- 253
K+VP CL G TFV SG L++L R++A L+K GG V SV++ T YL+ +
Sbjct: 174 KKVPAPCSGCLDGKTFVFSGVLENLSRDDAVHLVKCCGGSVANSVTRATKYLVIGATLEQ 233
Query: 254 ------GAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSP 307
G+K +A LT++ +++I + + +K+ K+
Sbjct: 234 GGKITDGSKYKEAVAKNVRILTQNEFYNLITEAAAAQQAQDLADEKA--KI--------- 282
Query: 308 QNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQ 367
KA I KT +S K+K N + WT+KY+P+T + ++GN +L ++
Sbjct: 283 -----------KAEIAGAKTASSKGKQK-LNTSVNDELWTDKYKPQTLDHMIGNIELGRK 330
Query: 368 LHTWLAHWNEKFLDTGTKR--NGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA 425
L TWL W E GTK+ K ++ K +LSG PG+GKTT A LV + GF+
Sbjct: 331 LKTWLLDW-EAMHVKGTKKIPFSTKLSENRGAKTVLLSGPPGIGKTTIANLVARECGFEC 389
Query: 426 IEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKH------PKTVLIMD 479
E+NASD+R K + +K+++ +AL + K + V+IMD
Sbjct: 390 TELNASDTRSKKMLQ----------TGLKDVLGTQALQFGVPSGKSKEKMHLARRVIIMD 439
Query: 480 EVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIA 539
EVDGMS GDRGG A+LI IK SK PIICICNDR SQK++SL N+ DLR R+P K +I
Sbjct: 440 EVDGMSGGDRGGTAELIQLIKKSKTPIICICNDRQSQKVRSLANHSFDLRMRRPTKIQIG 499
Query: 540 KRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSA 599
KRLM+I EGL + + A+EE ADR DIR + Q+Q L+ + I Y D+
Sbjct: 500 KRLMEIGLKEGLHIEKNAIEEAADRCGNDIRQLLTQMQRWRLTTTKITYADMVNPSSQHN 559
Query: 600 KDED--ISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYI----NYRPSSA 653
KDE ++PF+A ++F +L + R + D DL+PL+IQENYI N R SS
Sbjct: 560 KDESLRLNPFSATQQIF---QRELSFEARNEAYFVDYDLMPLMIQENYIQSIMNNRTSS- 615
Query: 654 GRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL---SQSSSLASCIIPAALMHGQRE 710
DE L A+E IS+ D+ N +R Q+W L + ++ +C+ A + G E
Sbjct: 616 --DE--NLEAAMHASEFISESDLLNTYVRMEQRWDLLTKQAAMNVGACVYSAGFI-GHPE 670
Query: 711 TLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQ 770
F WLGKNS+ K+ RLL +L + S S R+ +RLDY +
Sbjct: 671 -----------FSKWLGKNSSASKSKRLLSELSV-RMRSHASG-SREVIRLDYVPYM--- 714
Query: 771 LTEPLRVLPKDELLRKLLS 789
K+ LL+KLLS
Sbjct: 715 ---------KEILLKKLLS 724
>gi|384485534|gb|EIE77714.1| hypothetical protein RO3G_02418 [Rhizopus delemar RA 99-880]
Length = 841
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 206/602 (34%), Positives = 307/602 (50%), Gaps = 96/602 (15%)
Query: 177 RGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVT 236
+ G+ R+ P G + P GA +CL +TFVISG ++L +E+ +D++ R+GGRVT
Sbjct: 182 KKGYFAMLNREGPKALGTRPEPVGADNCLDSMTFVISGEFETLTKEQTKDIVMRYGGRVT 241
Query: 237 GSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVE 296
+VS KT YLL D +K KAK+ GT L EDG ++++ S P K ++
Sbjct: 242 SAVSGKTTYLLRGRDAGESKLAKAKKCGTKVLDEDGFYNLVENSAP----------KEIK 291
Query: 297 KVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPN 356
K S P +APKA +S A + Q++ +PKT
Sbjct: 292 KPVISPP------------AAPKA--------SSTASKGKQSVNT---------KPKTIQ 322
Query: 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKL 416
EI+GN+++VK+++ WL +WN T K N + D ++ + ++SG PG+GKTTAA +
Sbjct: 323 EIIGNKEMVKRINDWLGNWNH--TTTSPKIN---EADINSFRGVLISGPPGIGKTTAAHV 377
Query: 417 VCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476
V + G++ +E NASD+ K K K VL
Sbjct: 378 VARANGYEPLEFNASDAEPKPKGK--------------------------------KVVL 405
Query: 477 IMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQ 536
IMDEVDGMSAGDRGG +L + IK SKIP+ICICND S K+ L+ C D RF++
Sbjct: 406 IMDEVDGMSAGDRGGAVELASQIKKSKIPVICICNDVRSPKVAPLLRVCFDARFKRTPAA 465
Query: 537 EIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLL 596
+I R+M IA E L++ A++EL DIR IN L L+ + + YDD +Q
Sbjct: 466 QIRSRIMSIAFKEKLDIKPNAIDELVASTQNDIRQIINILSTYRLNKTSMAYDDAKQVGK 525
Query: 597 SSAKDEDISPFTAVDKLFGFNGGKLR-MDERIDLSMSDPDLVPLLIQENYINYRPSSAGR 655
+ K+ ++PF +L + + ++++ ++ D +L PL+I ENY+ +PS A +
Sbjct: 526 MNNKNTILNPFEIPGELLASTNWRQKDLNQKSEIYFHDYNLAPLMIHENYLKTKPSKATQ 585
Query: 656 ---------DEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALM 705
E + L A+AAE+I+DGD+ + I QQ+ L S+ SC+ PA M
Sbjct: 586 LCKSGSQKEIECIEMELAAQAAEAIADGDLVDSMIHGSTQQYSLMPVHSILSCVRPAYFM 645
Query: 706 HGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFS 765
G +T F WLG+NS GKN RLL +LH K+ + +R +Y S
Sbjct: 646 EGHFQTR-------TGFPAWLGQNSKAGKNSRLLSELHSRMRV--KTSGDKSEIRQNYIS 696
Query: 766 LL 767
L
Sbjct: 697 TL 698
>gi|50292909|ref|XP_448887.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528200|emb|CAG61857.1| unnamed protein product [Candida glabrata]
Length = 854
Score = 309 bits (791), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 212/602 (35%), Positives = 318/602 (52%), Gaps = 50/602 (8%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
++PEG +CL GLT V +GTL S+ER AE+L KR+G RVT S+SKKT+ ++ ++
Sbjct: 143 DIPEGQDNCLLGLTIVFTGTLPSIERGAAENLAKRYGARVTKSISKKTSVVVLGDEAGPK 202
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKST 315
K K K+LG + E+G F + A P A S + EK L ++ + I
Sbjct: 203 KLEKIKDLGIKAIDEEG-FKQLIAGMP----ADGGSGDAAEKAKQKLEEQEREAIRQAEE 257
Query: 316 SAPKAPIERMKTVASPAKRKGQN----------IQQSSLTWTEKYRPKTPNEIVGNQQLV 365
+ ++M AK K QN +++ WT KY P + ++ GN+ V
Sbjct: 258 MDREEKQKKMAREREMAKLKKQNPNSITTTREPVREQDKLWTVKYAPTSLQQVCGNKTSV 317
Query: 366 KQLHTWLAHWNEKFLDTGTKRNGKK---QNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422
+L TWL++W K NG K ++ +AA+L G PG+GKTTAA LV + LG
Sbjct: 318 NKLKTWLSNWE------ANKSNGFKTPGRDGTGIYRAAMLYGPPGIGKTTAAHLVAKELG 371
Query: 423 FQAIEVNASDSRGKADAKISKGIGGSNAN-SIKELVSNEALSANMDRSKHPKTVLIMDEV 481
+ +E NASD R K+ ++ G+ + N SI L+ N+ +AN S K V++MDEV
Sbjct: 372 YDVLEQNASDVRSKS--LLNGGVKNALDNFSIVGLLQNDK-TAN---SNGTKFVIVMDEV 425
Query: 482 DGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
DGMS GDRGG+ L + + P+I ICN+R K++ C D++FR+P I R
Sbjct: 426 DGMSGGDRGGVGQLAQFCRKTSTPLILICNERTLPKMRPFDRVCLDIQFRRPDANSIKAR 485
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD 601
LM IA E +++ +++L GDIR IN L +S + I +++I + + K+
Sbjct: 486 LMTIAVREKFKLDPNVIDKLVQATRGDIRQIINLLSTVSKTSKTINHENISEISAAWEKN 545
Query: 602 EDISPFTAVDKLFG------FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGR 655
+ PF +L + ++++I L D D PL+IQENYI+ RPS
Sbjct: 546 IALKPFDIAHRLLDGSIYTELGSQRFSLNDKIMLYFDDFDFAPLMIQENYIHTRPSVLKP 605
Query: 656 DEVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQ 714
+ L +A AAESIS GD+ +IR ++Q W L ++ S + PA+ + GQ
Sbjct: 606 GQ-SHLQAVADAAESISQGDLVERKIRSSEQLWGLLPLHAVLSSVRPASKVAGQM----A 660
Query: 715 GERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTE 773
G NF WLG+NS MGK RLL++L +H L++ +K G R++Y LL K+L
Sbjct: 661 GRINFTT---WLGQNSKMGKYYRLLQELQYHTRLSTSANKFG---FRMEYMPLLKKRLLN 714
Query: 774 PL 775
PL
Sbjct: 715 PL 716
>gi|449018911|dbj|BAM82313.1| replication factor C subunit 1 [Cyanidioschyzon merolae strain 10D]
Length = 900
Score = 309 bits (791), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 231/661 (34%), Positives = 329/661 (49%), Gaps = 96/661 (14%)
Query: 189 PPHKGEKEVP-EGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLL 247
PP +G+K P G+PDCL GL F I+G +DSL REE EDLI+ +GG V SV++ NYL+
Sbjct: 130 PPLRGKKAPPPRGSPDCLSGLNFCITGVMDSLTREEMEDLIRANGGHVCKSVTRNLNYLV 189
Query: 248 CDEDIAGAK-STKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVE-KVAASLPKK 305
D K A L EDG+F +IR ++K V ++ +L
Sbjct: 190 AGADPGPKKMQLAASRPSITVLDEDGVFALIRERS-------RDTKPPVNPQLEQALAPP 242
Query: 306 SPQNIEAKSTSAPKAPIERMKTVAS-PAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL 364
+ A + R +T + PA+ Q + WT KY P+ E++ N +
Sbjct: 243 PKGRRPSPPRPRSDAAVPRQETKENVPARMNAQ-----AELWTVKYHPRQATELLANPGV 297
Query: 365 VKQLHTWLAHWNEKF--LDTGTKR----NGKK----QNDASAEKAAILSGSPGMGKTTAA 414
+KQL WL W++ + D + R NG + + +AA+L+G PG+GKT+AA
Sbjct: 298 LKQLEDWLRTWSQVYGAADHTSNRSSSANGSRGRITNGNNKLPRAALLAGPPGIGKTSAA 357
Query: 415 KLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA---------- 464
V + G++ IE NASD+R ++ S ++ EL+ + + A
Sbjct: 358 HAVARQCGYEPIEFNASDTRNRS----------SLHETVAELLRSRTMHAFGQGRPHLEL 407
Query: 465 -----NMDRSKHPKT---VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQ 516
+ R+K P VLIMDE+DGMS+GDRGG+A+L I+ S++PIICICND S
Sbjct: 408 AGTSKGLWRNKLPAPQGQVLIMDEIDGMSSGDRGGLAELSRLIRKSRVPIICICNDDSSP 467
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
L++L LRFR+P +I KRL +IA EGL V++ ALE+LA+ +GDIR I +
Sbjct: 468 NLRTLKYSTLYLRFRRPMWSQIRKRLQEIAQKEGLRVDDAALEKLAEACHGDIRQMITMM 527
Query: 577 QYMSLSLSV-IKYDDIRQRLLSSAKD-EDISPFTAVDKLFGFNGGKL-----RMDERID- 628
Q S S S + Y D++Q K ED S F F G L +D R+D
Sbjct: 528 QLYSGSSSERLSYMDVKQLNEFLGKTFEDQSVFQLFGLFFHSPGWHLPGQTPHVDPRVDH 587
Query: 629 -----------LS------MSDPDLVPLLIQENYINYRPSSAGRDEVK---RLSLIARAA 668
LS D DL+PL++QENY+ + ++ R+ L +A AA
Sbjct: 588 GALESSAQLPGLSDLFETFFMDADLLPLMVQENYLLF--TNGKRNPTHAPYALRCMADAA 645
Query: 669 ESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGK 728
++IS GD+ N QIRR +W LS + SCI+P M G + + G NF WLGK
Sbjct: 646 DAISWGDLTNDQIRRQNRWDLSNVLAFLSCILPGHAMAGSQMS---GRPNFP---SWLGK 699
Query: 729 NSTMGKNLRLLEDLHFHHLASR------KSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDE 782
NST GK R+L D A+R + R L LDY +L +L PL + D
Sbjct: 700 NSTTGKMQRMLSDWVLRFQAARGPGGALGGAVDRRALVLDYRPMLPYRLVVPLVLQGNDA 759
Query: 783 L 783
L
Sbjct: 760 L 760
>gi|340711861|ref|XP_003394486.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 1-like
[Bombus terrestris]
Length = 1007
Score = 308 bits (790), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 221/646 (34%), Positives = 329/646 (50%), Gaps = 82/646 (12%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + +R + G KE+P GA CL GL+FVI+G LDSLEREEAE+LIK++GGR+ +
Sbjct: 248 YQQYLQRGGARNPGSKEIPVGAEQCLTGLSFVITGVLDSLEREEAEELIKQYGGRILHQI 307
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA---SKPMKALAQAESKKSV- 295
SKKT+Y++ + AK +KA L ++ED L ++IR +K K E+KK+
Sbjct: 308 SKKTDYVIVGDQAGPAKLSKATNLNIKKISEDDLLELIRTRVDTKEKKITVNEETKKAAK 367
Query: 296 --------------------------EKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVA 329
EK+ +S+ KK QN +S K I +K +
Sbjct: 368 VHSPHKSESSKKEIEDSLKQELYNKDEKIKSSIEKK--QNEHKESLVQDKKEIIDVKDI- 424
Query: 330 SPAKRKGQNIQQSS-----LTWTEKYRPKTPNEIVGNQ---QLVKQLHTWLAHWNEKFLD 381
K + +Q S EKYRPKT +I+G Q K+++ WL +W+ K
Sbjct: 425 ---KIQTNTLQDISGNTPVQALVEKYRPKTMKQILGQQGDKSNAKKIYAWLMNWH-KNQS 480
Query: 382 TGTKRN----GKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA 437
+ K K ++ + KAA+LSG PG+GKTT ++VC LGF IE NASD+R K
Sbjct: 481 SQVKHTRPSPWAKDDNGAFFKAALLSGPPGIGKTTTVQVVCNELGFDLIEFNASDTRSKK 540
Query: 438 DAKISKGIGGSNANSIKELVSNEALSANM-DRSKHP--KTVLIMDEVDGMSAG-DRGGIA 493
+ + EL+SN + D P K VL+MDEVDGM+ DRGG+
Sbjct: 541 LLQ----------EEVSELLSNTTIKNYFKDVKSKPSSKHVLLMDEVDGMAGNEDRGGLQ 590
Query: 494 DLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEV 553
+LI IK + IPI+CICNDR + K+++L NY DLRF KPR ++I + + E +++
Sbjct: 591 ELINLIKSTDIPIVCICNDRNNPKMRTLSNYTFDLRFPKPRLEQIRGAMKSMCFKENIQI 650
Query: 554 NEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKL 613
+ L+ L + N DIR IN L + + ++ ++ KD + P+ V K+
Sbjct: 651 SNEDLDRLIESTNQDIRQVINHLALFVGQTG--SQEKMXKKHIN--KDLRLGPWDVVKKV 706
Query: 614 FGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESIS 672
F K + + ++ L D ++ PL +QENY+ P ++E+ L +A +AESI+
Sbjct: 707 FSIEEHKHMSISDKSSLFFHDYNIAPLFVQENYLMVIP-QVPKNEL--LGRVAESAESIA 763
Query: 673 DGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTM 732
GD+ IR N W L + S +IP M G G+ N F WLG+NS
Sbjct: 764 LGDVVEKSIRSNNAWSLLPIQAYYSSVIPGTAMSGHI----GGQIN---FPAWLGRNSKT 816
Query: 733 GKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPLRV 777
GK RL++++ H LA+ SK + + LDY L + PL V
Sbjct: 817 GKLNRLMQEITLHTRLATGASK---EAINLDYIKPLRNTILRPLAV 859
>gi|226286728|gb|EEH42241.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb18]
Length = 1066
Score = 308 bits (790), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 214/624 (34%), Positives = 321/624 (51%), Gaps = 47/624 (7%)
Query: 181 MNFGER-KDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
NF +R +DP G E+P GA +CL GL+FV +G L SL REE + L+KR+GG+VT
Sbjct: 303 FNFAKRSRDPADSGTTELPVGAENCLVGLSFVFTGVLSSLGREEGQSLVKRYGGKVTTGP 362
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR---------ASKPMKALAQAE 290
S KT+Y++ +D K K+ G + E+GLF++IR + A Q +
Sbjct: 363 SSKTSYVVLGDDAGPKKLETIKKFGLKTINEEGLFELIRRLPANGGDGKAAEQYAARQKQ 422
Query: 291 SKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKY 350
++ + ++AA + ++ E K ++A P + TV+S K + I WT KY
Sbjct: 423 EEQRIRELAAEIDRE-----EKKHSAASMTP--KKMTVSSGNKPEPAAIDDR--LWTSKY 473
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
P + N I GN+ V++L +WL +W K+ GK + +A ++ G PG+GK
Sbjct: 474 APTSLNMICGNKTAVEKLQSWLRNWRNS-AKADFKKGGK--DGTGIYRAVMIHGPPGIGK 530
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRS 469
TTAA LV ++ + +E NASD+R K + G+ G + S++ S E + S
Sbjct: 531 TTAAHLVAKLENYDVVETNASDTRSKG--LLETGLRGVLDTTSLQGYFSGEGKKVD---S 585
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
VLIMDEVDGMSAGDRGG+ L + K ++IP+I ICN+R K++ + DL
Sbjct: 586 GKKNLVLIMDEVDGMSAGDRGGVGALASVAKKTRIPMILICNERRLPKMRPFDSVTFDLP 645
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
FR+P +I RL I EGL + L+ L + DIR IN L L + YD
Sbjct: 646 FRRPTVDQIRARLSTICYREGLRIPPQVLDSLIQGTHADIRQVINMLSTAKLDQGTLDYD 705
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLFG----FNGGKLRMDERIDLSMSDPDLVPLLIQENY 645
+Q + K + P+ V K+ + ++E+I+L +D + L++QENY
Sbjct: 706 QGKQMSKAWEKHVILKPWDIVGKILSAQMFAQSSQTSLNEKIELYFNDHEFSYLMVQENY 765
Query: 646 INYRPSSA----GRDE-VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCI 699
+N RPS A GR++ K L L AA+SISDGD+ + I QQW L + ++ S +
Sbjct: 766 LNTRPSIANAYQGREQRFKLLELTDNAAQSISDGDLVDRLIHGTQQQWSLMPTHAVFSFV 825
Query: 700 IPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTL 759
PA+ M G T G F WLG NS GK R ++++ H+ R S R +
Sbjct: 826 RPASFMAGNM-TDRPG------FTSWLGNNSKQGKMGRQIKEIQ-GHMRLRASG-DRHEI 876
Query: 760 RLDYFSLLLKQLTEPLRVLPKDEL 783
R Y L +L PL++ KD +
Sbjct: 877 RQQYMPALWNKLVRPLQIEGKDSV 900
>gi|255946327|ref|XP_002563931.1| Pc20g14550 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588666|emb|CAP86784.1| Pc20g14550 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1053
Score = 308 bits (790), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 207/617 (33%), Positives = 317/617 (51%), Gaps = 49/617 (7%)
Query: 181 MNFG--ERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
FG + +DP G KE+P G +CL GL+FV +G L+SL REE L+K++GG+V G+
Sbjct: 300 FKFGAQQSRDPAMTGTKEMPVGEENCLAGLSFVFTGVLESLGREEGAQLVKKYGGKVVGA 359
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR-----------ASKPMKALA 287
S KT+Y++ D K + + EDGLF++IR A K + L
Sbjct: 360 PSSKTSYVVLGADAGPKKLETIAKHKIKTINEDGLFELIRRLPANGGDGKAAEKYAEKLK 419
Query: 288 QAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWT 347
ESK V +AA + + + E K +A P + AS Q L WT
Sbjct: 420 ADESK--VRAMAAEIDAEEKKREEQKRKTAMAQP-SKTAATASQTPPSPQPASSGDL-WT 475
Query: 348 EKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPG 407
KY P + + I GN+ V+++ TWL +W+ K+ GK + + +A I+ G PG
Sbjct: 476 TKYAPTSISMICGNKGAVEKIQTWLRNWHAS-AQADFKKGGK--DGSGIYRAVIIHGPPG 532
Query: 408 MGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMD 467
+GKTTAA LV ++ GF +E NASD+R K + S +G + S++ + +
Sbjct: 533 IGKTTAAHLVAKLEGFDVVETNASDTRSKKLVE-SSTLGVLDTTSLQGYFAGHGKQVESE 591
Query: 468 RSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSD 527
+ K VLIMDEVDGMSAGDRGG+ + A +K +KIP+I ICN+R QK+K D
Sbjct: 592 KRK---LVLIMDEVDGMSAGDRGGVGAVAAIVKKTKIPVILICNERKIQKMKPFDFITYD 648
Query: 528 LRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIK 587
+ FR+P ++I RL I EGL++ L+ L + + DIR IN L L +
Sbjct: 649 VPFRRPTAEQIRARLSTICFREGLKIPPPVLDGLIEGTHADIRQVINMLSTARLDQKGLN 708
Query: 588 YDDIRQRLLSSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQE 643
YD+ +Q S K+ + P+ V K+ ++++++L +D + L++QE
Sbjct: 709 YDEGKQMSKSWEKNIILKPWDIVSKILSAQMFSPSSTSTLNDKVELYFNDHEFSYLMLQE 768
Query: 644 NYINYRPSSAGRDE-----VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLAS 697
NY+ +P+ AG+ + +K L L+ AA SISDGD+ + I QQW L + ++ S
Sbjct: 769 NYLKTKPALAGKYQGKEQRLKSLELMDNAASSISDGDLVDRMIHGTQQQWSLMPTHAIFS 828
Query: 698 CIIPAALMHGQRETLEQGERNFNR---FGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKL 754
+ PA+ +G NFN F WLG NS GK R ++++ H ++
Sbjct: 829 FVRPASFQYG----------NFNERPAFTSWLGNNSKQGKLSRYVKEIQGH--MRLRTTG 876
Query: 755 GRDTLRLDYFSLLLKQL 771
RD +R Y LL +++
Sbjct: 877 NRDEIRQQYMPLLQEKM 893
>gi|294656132|ref|XP_458382.2| DEHA2C15994p [Debaryomyces hansenii CBS767]
gi|199430883|emb|CAG86464.2| DEHA2C15994p [Debaryomyces hansenii CBS767]
Length = 915
Score = 308 bits (790), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 219/626 (34%), Positives = 335/626 (53%), Gaps = 64/626 (10%)
Query: 180 FMNFGERK--DPPHKGEK-EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVT 236
F F +RK P GE+ E+PE P+CL GLT + +G L LER AE+L K++G +VT
Sbjct: 189 FNFFQQRKADGPQPSGEELEIPEAQPNCLSGLTMIFTGILPRLERTVAENLAKKYGAKVT 248
Query: 237 GSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA--------SKPMKALA- 287
S+S KT+ ++ E+ +K K K+ +TEDG ++++ M+A
Sbjct: 249 KSISGKTSLVVIGEEAGPSKVQKIKKNKIKAITEDGFIQLLQSMPAEGGDGESAMEARRK 308
Query: 288 -QAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTW 346
+AE +K +E+ A S +K+ E K+ S P+ + K S A+ + I S W
Sbjct: 309 REAEERKIIEE-AESEERKA--RAEEKAASQPQI---KSKVDPSRAESPKRIIPNSEKLW 362
Query: 347 TEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSG 404
T KY P ++ GN+ + +L TWL++W E K + K Q+ + +A ++SG
Sbjct: 363 TVKYAPNDIVQLCGNKGQINKLKTWLSNWFE-----NAKHDFKNPGQDGSGVFRACLISG 417
Query: 405 SPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA 464
PG+GKT+AA LV LGF +E NASD R SK + SN IK +++N ++
Sbjct: 418 PPGIGKTSAAHLVANNLGFDVLEKNASDVR-------SKSLLNSN---IKSVLNNTSVVG 467
Query: 465 NM----DRSKHP---KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQK 517
D +H K LIMDEVDGMS+GD GG L A +I+K+P+I ICND+ K
Sbjct: 468 FFKHRNDVEQHANDKKFCLIMDEVDGMSSGDHGGAGALSAFCRITKMPMILICNDKSLPK 527
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+++ DL FR+P + E+ RLM IA+ E ++++ + +L N DIR IN L
Sbjct: 528 MRTFDRVTYDLAFRRPTETEVKARLMTIAHREKIKLDPTIIGQLVQVTNHDIRQMINLLS 587
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG---FN-GGKLRMDERIDLSMSD 633
+S + I +++ R+ S K + PF KL +N ++++IDL +D
Sbjct: 588 TVSTTQKSISHNESREFSKSWQKQTVLKPFDITGKLLNGQIYNPSANHSLNDKIDLYFND 647
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRN-QQWQLSQS 692
D PL+IQENYI+ +P++ + + L +ARAA+ IS D N IR + QQW L
Sbjct: 648 IDFTPLMIQENYISTKPTNV-KSTLDHLERVARAADDISQSDHVNSLIRSSEQQWSLLPF 706
Query: 693 SSLASCIIPAALMHGQRETLEQGERNFNR---FGGWLGKNSTMGKNLRLLEDLHFHHLAS 749
++ S + P++ + G NF + F GWLG+NS K RLL++L +H
Sbjct: 707 HAVMSSVKPSSEVAG----------NFTQRINFAGWLGQNSKAMKYQRLLQELQYH--TR 754
Query: 750 RKSKLGRDTLRLDYFSLLLKQLTEPL 775
++ + LRLDY LL+K+LT+PL
Sbjct: 755 LRTSTDKAELRLDYLPLLVKKLTDPL 780
>gi|225684712|gb|EEH22996.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb03]
Length = 1066
Score = 308 bits (789), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 214/624 (34%), Positives = 321/624 (51%), Gaps = 47/624 (7%)
Query: 181 MNFGER-KDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
NF +R +DP G E+P GA +CL GL+FV +G L SL REE + L+KR+GG+VT
Sbjct: 303 FNFAKRSRDPADSGTTELPVGAENCLVGLSFVFTGVLSSLGREEGQSLVKRYGGKVTTGP 362
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR---------ASKPMKALAQAE 290
S KT+Y++ +D K K+ G + E+GLF++IR + A Q +
Sbjct: 363 SSKTSYVVLGDDAGPKKLETIKKFGLKTINEEGLFELIRRLPANGGDGKAAEQYAARQKQ 422
Query: 291 SKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKY 350
++ + ++AA + ++ E K ++A P + TV+S K + I WT KY
Sbjct: 423 EEQRIRELAAEIDRE-----EKKHSAASMTP--KKMTVSSGNKPEPAAIDDR--LWTSKY 473
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
P + N I GN+ V++L +WL +W K+ GK + +A ++ G PG+GK
Sbjct: 474 APTSLNMICGNKTAVEKLQSWLRNWRNS-AKADFKKGGK--DGTGIYRAVMIHGPPGIGK 530
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRS 469
TTAA LV ++ + +E NASD+R K + G+ G + S++ S E + S
Sbjct: 531 TTAAHLVAKLENYDVVETNASDTRSKG--LLETGLRGVLDTTSLQGYFSGEGKKVD---S 585
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
VLIMDEVDGMSAGDRGG+ L + K ++IP+I ICN+R K++ + DL
Sbjct: 586 GKKNLVLIMDEVDGMSAGDRGGVGALASVAKKTRIPMILICNERRLPKMRPFDSVTFDLP 645
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
FR+P +I RL I EGL + L+ L + DIR IN L L + YD
Sbjct: 646 FRRPTVDQIRARLSTICYREGLRIPPQVLDSLIQGTHADIRQVINMLSTAKLDQGTLDYD 705
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLFG----FNGGKLRMDERIDLSMSDPDLVPLLIQENY 645
+Q + K + P+ V K+ + ++E+I+L +D + L++QENY
Sbjct: 706 QGKQMSKAWEKHVILKPWDIVGKILSAQMFAQSSQTSLNEKIELYFNDHEFSYLMVQENY 765
Query: 646 INYRPSSA----GRDE-VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCI 699
+N RPS A GR++ K L L AA+SISDGD+ + I QQW L + ++ S +
Sbjct: 766 LNTRPSIANAYQGREQRFKLLELTDNAAQSISDGDLVDRLIHGTQQQWSLMPTHAVFSFV 825
Query: 700 IPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTL 759
PA+ M G T G F WLG NS GK R ++++ H+ R S R +
Sbjct: 826 RPASFMAGNM-TDRPG------FTSWLGNNSKQGKMGRQIKEIQ-GHMRLRASG-DRHEI 876
Query: 760 RLDYFSLLLKQLTEPLRVLPKDEL 783
R Y L +L PL++ KD +
Sbjct: 877 RQQYMPALWNKLVRPLQIEGKDSV 900
>gi|295674213|ref|XP_002797652.1| replication factor C subunit 1 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280302|gb|EEH35868.1| replication factor C subunit 1 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1066
Score = 308 bits (789), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 213/624 (34%), Positives = 321/624 (51%), Gaps = 47/624 (7%)
Query: 181 MNFGER-KDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
NF +R +DP G E+P GA +CL GL+FV +G L SL REE + L+KR+GG+VT
Sbjct: 303 FNFAKRSRDPADSGTTELPVGAENCLVGLSFVFTGVLSSLGREEGQSLVKRYGGKVTTGP 362
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR---------ASKPMKALAQAE 290
S KT+Y++ +D K K+ G + E+GLF++IR + A Q +
Sbjct: 363 SSKTSYVVLGDDAGPKKLETIKKFGLKTINEEGLFELIRRLPANGGDGKAAEQYAARQKQ 422
Query: 291 SKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKY 350
++ ++++AA + ++ E K ++A P + TV+ K + I WT KY
Sbjct: 423 EEQRIKELAAEIDRE-----EKKHSAASMTP--KKMTVSGGNKPEPAAIDDR--LWTSKY 473
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
P + N I GN+ V++L +WL +W K+ GK + +A ++ G PG+GK
Sbjct: 474 APTSLNMICGNKTAVEKLQSWLRNWRNS-AKADFKKGGK--DGTGIYRAVMIHGPPGIGK 530
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRS 469
TTAA LV ++ + +E NASD+R K + G+ G + S++ S E + S
Sbjct: 531 TTAAHLVAKLENYDVVETNASDTRSKG--LLETGLRGVLDTTSLQGYFSGEGKKVD---S 585
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
VLIMDEVDGMSAGDRGG+ L + K ++IP+I ICN+R K++ + DL
Sbjct: 586 GKKNLVLIMDEVDGMSAGDRGGVGALASVAKKTRIPMILICNERRLPKMRPFDSVTFDLP 645
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
FR+P +I RL I EGL + L+ L + DIR IN L L + YD
Sbjct: 646 FRRPTVDQIRARLSTICYREGLRIPPQVLDSLIQGTHADIRQVINMLSTAKLDQGTLDYD 705
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLFG----FNGGKLRMDERIDLSMSDPDLVPLLIQENY 645
+Q + K + P+ V K+ + ++E+I+L +D + L++QENY
Sbjct: 706 QGKQMSKAWEKHVILKPWDIVGKILSAQMFAQSSQTSLNEKIELYFNDHEFSYLMVQENY 765
Query: 646 INYRPSSA----GRDE-VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCI 699
+N RPS A GR++ K L L AA+SISDGD+ + I QQW L + ++ S +
Sbjct: 766 LNTRPSIANAYQGREQRFKLLELTDNAAQSISDGDLVDRLIHGTQQQWSLMPTHAVFSFV 825
Query: 700 IPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTL 759
PA+ M G T G F WLG NS GK R ++++ H+ R S R +
Sbjct: 826 RPASFMAGNM-TDRPG------FTSWLGNNSKQGKMARQIKEIQ-GHMRLRASG-DRHEI 876
Query: 760 RLDYFSLLLKQLTEPLRVLPKDEL 783
R Y L +L PL++ KD +
Sbjct: 877 RQQYMPALWNKLVRPLQIEGKDSV 900
>gi|328863808|gb|EGG12907.1| hypothetical protein MELLADRAFT_46497 [Melampsora larici-populina
98AG31]
Length = 937
Score = 308 bits (788), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 222/615 (36%), Positives = 312/615 (50%), Gaps = 58/615 (9%)
Query: 185 ERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTN 244
+R P G KE+PEG P+CL GLTFV +G LDSL REEA+ L KR+GGRVT S S KT
Sbjct: 206 QRAGPSAPGSKEIPEGQPNCLAGLTFVFTGELDSLSREEAQTLCKRYGGRVTTSPSSKTT 265
Query: 245 YLLCDEDIAGAKSTK--AKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASL 302
Y++ D AGAK + AK T LTED ++I +S +V +
Sbjct: 266 YVVLGSD-AGAKKLEVIAKHKIT-TLTEDEFLELI-------------GTRSASEVDPKV 310
Query: 303 PKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQ 362
KK I+ K A KA +E K + + Q++ + WT KY PK NE+ GN+
Sbjct: 311 LKKQQDEIK-KIKQAAKA-MEPTKGSTAEIAQAKQDL--AGQLWTMKYAPKALNELCGNK 366
Query: 363 QLVKQLHTWLAHW--NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM 420
V++L TWL W N K T ++G + +LSG PG+GKTT A LV ++
Sbjct: 367 TQVERLQTWLRDWPKNRKAKFTKPGKDG-----LGLYRCIVLSGPPGVGKTTTAHLVSKL 421
Query: 421 LGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRS--KHPKTVLIM 478
G+ IE+NAS++R K ++ K++ N + ++ S K+ K VLIM
Sbjct: 422 EGYDVIEMNASNTRSKKLLEVG----------CKDITGNVGIGGFLESSEPKNEKLVLIM 471
Query: 479 DEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEI 538
DEVDGMSAGDRGG+ L + I+ ++IPII I ND K+K L + L FR+P I
Sbjct: 472 DEVDGMSAGDRGGVGALNSLIRKTQIPIIAIANDMSIPKMKPLKSTTHSLVFRRPDANAI 531
Query: 539 AKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS-----LSVIKYDDIRQ 593
R+M IA E L+V IA+++L DIR IN L L +++DD R+
Sbjct: 532 RSRIMCIAFREKLKVPAIAIDQLVMGSQSDIRQIINMLSVWKLQSGEGPSKPMEFDDARK 591
Query: 594 RLLSSAKDEDISPFTAVDKLFG----FNGGKLRMDERIDLSMSDPDLVPLLIQENYINY- 648
L + K+ +SP++ V KLF + ++ DL D D++PL +Q+ Y +
Sbjct: 592 MALMNEKNTIVSPWSLVHKLFAPQTWSQACSMSFMDKCDLYFQDHDMLPLFVQDGYTKHE 651
Query: 649 ----RPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAA 703
R K+L L+++AA+SISDGD+ + I QQ W L + SCI PA
Sbjct: 652 CGLARNCVGPEKAAKKLELLSQAADSISDGDLVDRMIHGPQQHWSLMPIHGIFSCIRPAY 711
Query: 704 LMH-GQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLD 762
H + QG F W GKNST K R L ++ K + + L
Sbjct: 712 FCHGPSSSSGFQGGGGGVGFPAWFGKNSTQSKLNRFLGEIQIR--MRMKISADKKEVLLT 769
Query: 763 YFSLLLKQLTEPLRV 777
Y LL+ L +PLR+
Sbjct: 770 YLPLLMNFLVDPLRI 784
>gi|374106711|gb|AEY95620.1| FACR102Wp [Ashbya gossypii FDAG1]
Length = 840
Score = 308 bits (788), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 203/591 (34%), Positives = 319/591 (53%), Gaps = 47/591 (7%)
Query: 199 EGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKST 258
+GAP+CL GLT V +G L +++R AE L K++G RVT S+S KT+ ++ ++ K
Sbjct: 141 QGAPNCLLGLTMVFTGVLPNIDRPAAEALAKKYGARVTKSISSKTSVVVLGDEAGPKKLE 200
Query: 259 KAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAP 318
K ++LG + E+G +I A A+ S + E+ L KK +++ ++ +
Sbjct: 201 KIRQLGIKAIDENGFRQLINAMP-----AEGGSGVAAERARQQL-KKQEEDVLREAETLA 254
Query: 319 KAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK 378
+ ER + AS A ++S WT KY P + ++I GN+ V +LH WL+ W+
Sbjct: 255 RQEKERAASRASSAPGGHAAPRESDQLWTVKYAPTSLSQICGNKSSVGKLHKWLSEWDN- 313
Query: 379 FLDTGTKRNGKK---QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG 435
+RNG K ++ +AA+L G PG+GKTTAA LV LG+ +E NASD R
Sbjct: 314 -----NQRNGFKTPGRDGTGIYRAAMLYGPPGIGKTTAAHLVANELGYDVLEQNASDVRS 368
Query: 436 KADAKISKGIGGSNANSIKELVSNEALSANMDRSKHP---KTVLIMDEVDGMSAGDRGGI 492
K +++GI K + N ++ ++ +H K V+IMDEVDGMS GDRGG+
Sbjct: 369 KK--LLNEGI--------KNALDNTSVIGYFNKKEHRNSRKFVIIMDEVDGMSGGDRGGV 418
Query: 493 ADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLE 552
+ + + P+I ICN+R K++ D++FR+P Q + RLM IA EG +
Sbjct: 419 GQMAQFCRKTSSPLILICNERTLPKMRPFDRVVCDIQFRRPDAQSMKARLMTIAVREGFK 478
Query: 553 VNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDK 612
++ +++L GDIR IN L +S + I +D+ RQ + K+ + P+ K
Sbjct: 479 LDPTVVDQLVAATRGDIRQIINLLSTISTTTKSIGHDNARQISAAWEKNIALKPYDITHK 538
Query: 613 LF-GFN-----GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIAR 666
LF G N + ++++L D D PL++QENY++ RP++ + L A
Sbjct: 539 LFEGRNYSDAGAQSFPLYKKMELYFDDFDFTPLMVQENYLSTRPTNLSPGQ-SHLQAAAA 597
Query: 667 AAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGW 725
AA+SIS+GD+ + +IR +Q W L ++ S + PA+L+ GQ G NF W
Sbjct: 598 AADSISEGDLVDRKIRSGEQLWSLLPFHAVMSSVRPASLVSGQM----AGRINFT---SW 650
Query: 726 LGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
LG+NS GK RLL++LH+H L + SK+ + RLDY + L ++L PL
Sbjct: 651 LGQNSKTGKYYRLLQELHYHTRLRTSASKV---SFRLDYLTTLKRRLLSPL 698
>gi|212537239|ref|XP_002148775.1| DNA replication factor C subunit Rfc1, putative [Talaromyces
marneffei ATCC 18224]
gi|210068517|gb|EEA22608.1| DNA replication factor C subunit Rfc1, putative [Talaromyces
marneffei ATCC 18224]
Length = 1031
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 220/623 (35%), Positives = 331/623 (53%), Gaps = 42/623 (6%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
F G + PP G E+P GA +CL GL+FV +G LDSL REE + L+KR+GG+VTG+
Sbjct: 279 FAAAGRSRTPPAAGSAEIPVGAENCLAGLSFVFTGVLDSLGREEGQSLVKRYGGKVTGAP 338
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM----KALAQAESKKSV 295
S KT+Y++ D +K K KE+ + E+GLF++IR KA QA++KK
Sbjct: 339 SSKTSYVVLGSDAGPSKLRKIKEMNIKTIGEEGLFELIRRLPANGGSGKAAGQAQAKKEA 398
Query: 296 EKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVAS-PAKRKGQNIQQSSLTWTEKYRPKT 354
E+ + + E + + KA K+ A+ PA + Q + WT KY P +
Sbjct: 399 EEKKIRAMAEEMEQEEKQKAAEAKARRTPQKSAATTPASSQPQFDDR---LWTTKYAPSS 455
Query: 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAA 414
N I GN+ V++L TWL +W L+ K ++ + ++ ++ G PG+GKTTAA
Sbjct: 456 LNMICGNKGQVEKLQTWLRNWR---LNAKRKFKMAGKDGSGLYRSVMIHGPPGIGKTTAA 512
Query: 415 KLVCQMLGFQAIEVNASDSRGKADAKISKG--IGGSNANSIKELVSNEALSANMDRSKHP 472
LV ++ G+ +E NASD+R K K+ +G +G + S++ S+E + S+
Sbjct: 513 HLVAKLEGYDVVETNASDTRSK---KLVEGSLLGVLDTTSLQGYFSSEGKNVE---SQKK 566
Query: 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRK 532
VLIMDEVDGMSAGDRGG+ L A+ K + IP+I ICN+R K+K + +L FR+
Sbjct: 567 NLVLIMDEVDGMSAGDRGGVGALAAAAKKTNIPLILICNERSLPKMKPFDHVTYELPFRR 626
Query: 533 PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIR 592
P + I RLM I EGL++ L+ L N DIR IN L + L + +D +
Sbjct: 627 PTAEMIRARLMTICFREGLKIPPPVLDSLIAGTNADIRQLINMLSTVKLDQKTLDFDQGK 686
Query: 593 QRLLSSAKDEDI--SPFTAVDKLFGF----NGGKLRMDERIDLSMSDPDLVPLLIQENYI 646
Q LS A ++ I P+ K+ KL ++++I+L +D + L++QENY+
Sbjct: 687 Q--LSKAWEKHIILKPWDIASKILNAQTFSQSSKLTLNDKIELYFNDHEFSYLMLQENYL 744
Query: 647 NYRPSSA----GRD-EVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCII 700
+P+ A G++ ++K L L AA SISDGD+ + I QQW L + ++ S +
Sbjct: 745 KTQPTLASNYPGKERKLKLLELADNAASSISDGDLVDRMIHGSQQQWSLMPTHAVFSFVR 804
Query: 701 PAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLR 760
PA+ + G ER F WLG NS GK R +++ H+ R S RD +R
Sbjct: 805 PASFIFGN-----MMER--TSFTSWLGNNSKYGKLNRYTKEIQ-GHMRLRASG-DRDEIR 855
Query: 761 LDYFSLLLKQLTEPLRVLPKDEL 783
Y L ++ PL V KD +
Sbjct: 856 QQYLPALWDKMVRPLMVDGKDAV 878
>gi|302307023|ref|NP_983504.2| ACR102Wp [Ashbya gossypii ATCC 10895]
gi|299788800|gb|AAS51328.2| ACR102Wp [Ashbya gossypii ATCC 10895]
Length = 840
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 203/591 (34%), Positives = 319/591 (53%), Gaps = 47/591 (7%)
Query: 199 EGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKST 258
+GAP+CL GLT V +G L +++R AE L K++G RVT S+S KT+ ++ ++ K
Sbjct: 141 QGAPNCLLGLTMVFTGVLPNIDRPAAEALAKKYGARVTKSISSKTSVVVLGDEAGPKKLE 200
Query: 259 KAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAP 318
K ++LG + E+G +I A A+ S + E+ L KK +++ ++ +
Sbjct: 201 KIRQLGIKAIDENGFRQLINAMP-----AEGGSGVAAERARQQL-KKQEEDVLREAETLA 254
Query: 319 KAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK 378
+ ER + AS A ++S WT KY P + ++I GN+ V +LH WL+ W+
Sbjct: 255 RQEKERAASRASNAPGGHAAPRESDQLWTVKYAPTSLSQICGNKSSVGKLHKWLSEWDN- 313
Query: 379 FLDTGTKRNGKK---QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG 435
+RNG K ++ +AA+L G PG+GKTTAA LV LG+ +E NASD R
Sbjct: 314 -----NQRNGFKTPGRDGTGIYRAAMLYGPPGIGKTTAAHLVANELGYDVLEQNASDVRS 368
Query: 436 KADAKISKGIGGSNANSIKELVSNEALSANMDRSKHP---KTVLIMDEVDGMSAGDRGGI 492
K +++GI K + N ++ ++ +H K V+IMDEVDGMS GDRGG+
Sbjct: 369 KK--LLNEGI--------KNALDNTSVIGYFNKKEHRNSRKFVIIMDEVDGMSGGDRGGV 418
Query: 493 ADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLE 552
+ + + P+I ICN+R K++ D++FR+P Q + RLM IA EG +
Sbjct: 419 GQMAQFCRKTSSPLILICNERTLPKMRPFDRVVCDIQFRRPDAQSMKARLMTIAVREGFK 478
Query: 553 VNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDK 612
++ +++L GDIR IN L +S + I +D+ RQ + K+ + P+ K
Sbjct: 479 LDPTVVDQLVAATRGDIRQIINLLSTISTTTKSIGHDNARQISAAWEKNIALKPYDITHK 538
Query: 613 LF-GFN-----GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIAR 666
LF G N + ++++L D D PL++QENY++ RP++ + L A
Sbjct: 539 LFEGRNYSDAGAQSFPLYKKMELYFDDFDFTPLMVQENYLSTRPTNLSPGQ-SHLQAAAA 597
Query: 667 AAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGW 725
AA+SIS+GD+ + +IR +Q W L ++ S + PA+L+ GQ G NF W
Sbjct: 598 AADSISEGDLVDRKIRSGEQLWSLLPFHAVMSSVRPASLVSGQM----AGRINFT---SW 650
Query: 726 LGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
LG+NS GK RLL++LH+H L + SK+ + RLDY + L ++L PL
Sbjct: 651 LGQNSKRGKYYRLLQELHYHTRLRTSASKV---SFRLDYLTTLKRRLLSPL 698
>gi|254583820|ref|XP_002497478.1| ZYRO0F06446p [Zygosaccharomyces rouxii]
gi|238940371|emb|CAR28545.1| ZYRO0F06446p [Zygosaccharomyces rouxii]
Length = 841
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 207/612 (33%), Positives = 329/612 (53%), Gaps = 47/612 (7%)
Query: 182 NFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSK 241
N G +D P + PEG P+CL GLT V +GTL ++ER AE + KR+G R+T S+S
Sbjct: 114 NNGNDQDVPMGSADDFPEGKPNCLLGLTLVFTGTLPNIERGVAESIAKRYGARITKSISS 173
Query: 242 KTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAAS 301
KT+ ++ E+ K K+LG + E+G F + P + A ++K+ +K+
Sbjct: 174 KTSAVVLGEEAGPKKVDTIKKLGIKAIDEEG-FKQLILGMPAEGGDGALAEKARKKI--- 229
Query: 302 LPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLT------WTEKYRPKTP 355
++ + + ++ K ER++ + + A++ G++ +Q+ L WT KY P
Sbjct: 230 --EEQEKQAQKEADEMAKKEKERVQRIEA-AQKSGESAKQNDLVHEQNKLWTVKYAPTNL 286
Query: 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQ---NDASAEKAAILSGSPGMGKTT 412
+I GN+ V +L +WL +W+E +K+NG K+ + + +AA+L G PG+GKTT
Sbjct: 287 QQICGNKGAVTKLKSWLTNWDE------SKKNGFKKSGRDGSGVFRAAMLYGPPGIGKTT 340
Query: 413 AAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNAN-SIKELVSNEALSANMDRSKH 471
AA LV LG+ +E NASD R K+ ++ G+ + N S+ N+ +A D SK
Sbjct: 341 AAHLVANELGYDVLEKNASDVRSKS--LLNVGVKNALDNMSVMGFFENKH-NAQDDNSK- 396
Query: 472 PKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFR 531
K V++MDEVDGMS GDRGG+ L + + P+I ICN+R K++ C D++FR
Sbjct: 397 -KFVIVMDEVDGMSGGDRGGVGQLAQFCRKTLTPMILICNERNIPKMRPFDRTCLDIQFR 455
Query: 532 KPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
+P I RLM IA E +++ +++L GDIR IN L +S + I +++I
Sbjct: 456 RPDANSIKARLMTIAVRERFKLDPNIVDKLVQATRGDIRQIINLLSTVSKTTKTINHENI 515
Query: 592 RQRLLSSAKDEDISPFTAVDKLF------GFNGGKLRMDERIDLSMSDPDLVPLLIQENY 645
+ + K+ + PF KL ++++I L D D PL++QENY
Sbjct: 516 TEISQAWEKEIALKPFDIAHKLLDGRIYTDAGSQTFNLNDKIALYFDDFDFAPLMVQENY 575
Query: 646 INYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAAL 704
+N RPS E L IA+AA+SIS ++ +IR ++Q W L ++ S + PA+
Sbjct: 576 VNTRPSLLQSGET-HLEAIAKAADSISMSNLVETKIRSSEQLWSLLPLHAVLSSVYPASK 634
Query: 705 MHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDY 763
+ GQ G NF WLG+NS K RLL++L +H L++ +K+G LRL+Y
Sbjct: 635 IAGQM----AGRINFT---SWLGQNSKTNKYYRLLQELQYHTRLSTSTNKVG---LRLEY 684
Query: 764 FSLLLKQLTEPL 775
L K+L +P+
Sbjct: 685 LPALKKRLLDPI 696
>gi|225563290|gb|EEH11569.1| chromosome transmission fidelity factor [Ajellomyces capsulatus
G186AR]
Length = 1071
Score = 306 bits (784), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 207/624 (33%), Positives = 317/624 (50%), Gaps = 47/624 (7%)
Query: 181 MNFGER-KDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+F +R +DP G K++P GA +CL GL+FV +G LD+L REE + L+KR+GG+VT +
Sbjct: 309 FSFAQRSRDPVTSGSKDLPVGAENCLAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSAP 368
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR---------ASKPMKALAQAE 290
S KTNY++ D K ++ G + EDGLF++IR + A +
Sbjct: 369 SSKTNYVVLGSDAGPKKLETIRKFGLKSINEDGLFELIRRLPANGGDGKAAEKHAAKKKL 428
Query: 291 SKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKY 350
+ ++ +AA + ++ + A S K+ + +PA Q WT KY
Sbjct: 429 EDQRIKDMAAEIDREEKKKAAASIASTTKS----LNGAGNPAP-----AQVDDRLWTSKY 479
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
P + + I GN+ V++L TWL +W + K+ GK + +A ++ G PG+GK
Sbjct: 480 APTSLSMICGNKGAVEKLQTWLRNWRTSSM-ADFKKGGK--DGTGIYRAVMIHGPPGIGK 536
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRS 469
TTAA LV ++ + +E NASD+R K+ + G+ G + S++ S E S
Sbjct: 537 TTAAHLVAKLENYDVVESNASDTRSKS--LVETGLRGVLDTTSLQGYFSGEGKKVE---S 591
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
VLIMDEVDGMSAGDRGG+ L A K ++IP+I ICN+R K++ + DL
Sbjct: 592 GKKNLVLIMDEVDGMSAGDRGGVGALAAVAKKTRIPMILICNERRLPKMRPFDSVTFDLP 651
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
FR+P ++I RL I EGL++ L+ L + DIR IN L L + YD
Sbjct: 652 FRRPTVEQIRARLSTICYREGLKIPPQVLDSLIQGTHADIRQVINMLSTAKLDQPTLDYD 711
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENY 645
+Q + K + P+ V K+ + ++E+I+L +D + L++QENY
Sbjct: 712 QGKQMSKAWEKHIILKPWDIVGKILSAQMFSKSSETTLNEKIELYFNDHEFSYLMLQENY 771
Query: 646 INYRPSSA----GRDE-VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCI 699
+N RPS+A GR++ K L L AA+SISDGD+ + I QQW L + ++ S +
Sbjct: 772 LNTRPSAANSYQGREQKFKLLELADNAAQSISDGDLVDRMIHGSQQQWSLMPTHAVFSFV 831
Query: 700 IPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTL 759
PA+ M G + F WLG NS K R ++++ H +S R +
Sbjct: 832 RPASFMAGNMT-------DRPAFTSWLGNNSKQSKMARQIKEIQGHMRL--RSSGDRHEI 882
Query: 760 RLDYFSLLLKQLTEPLRVLPKDEL 783
R Y L +L PL+ KD +
Sbjct: 883 RQQYLPALWNKLVLPLQAQGKDSV 906
>gi|242809846|ref|XP_002485458.1| DNA replication factor C subunit Rfc1, putative [Talaromyces
stipitatus ATCC 10500]
gi|218716083|gb|EED15505.1| DNA replication factor C subunit Rfc1, putative [Talaromyces
stipitatus ATCC 10500]
Length = 1028
Score = 305 bits (782), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 221/622 (35%), Positives = 322/622 (51%), Gaps = 56/622 (9%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
F + PP G E+P GA +CL GL+FV +G LD+L REE + L+KR+GG+VTG+
Sbjct: 279 FAAAARSRTPPAAGSAELPVGAENCLAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTGAP 338
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM----KALAQAESKKSV 295
S KT+Y++ D +K K KE+ + E+GLF++IR KA QA++KK
Sbjct: 339 SSKTSYVVLGSDAGPSKLRKIKEMNIKTIGEEGLFELIRRLPANGGSGKAAGQAQAKKEA 398
Query: 296 EK------VAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEK 349
E+ ++ + E KS S PK P +V +PA + WT K
Sbjct: 399 EEKKIRAMAEEIEQEEKQKAAETKSRSTPKKP-----SVVTPA---SSHPDVDDRLWTTK 450
Query: 350 YRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPG 407
Y P + N I GN+ V++L TWL +W KRN K + + +A ++ G PG
Sbjct: 451 YAPTSMNMICGNKGQVEKLQTWLRNWR-----LSAKRNFKMPGKEGSGLYRAVMIYGPPG 505
Query: 408 MGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG--IGGSNANSIKELVSNEALSAN 465
+GKTTAA LV ++ G+ +E NASD+R K K+ +G +G + S++ S E
Sbjct: 506 IGKTTAAHLVAKLEGYDVVETNASDTRSK---KLVEGGLLGVLDTTSLQGYFSGEGKKV- 561
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
S+ VLIMDEVDGMSAGDRGG+ L A+ K + IP+I ICN+R K+K +
Sbjct: 562 --ESQKKNLVLIMDEVDGMSAGDRGGVGALAAAAKKTNIPLILICNERSLPKMKPFDHVT 619
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV 585
+L+FR+P I RLM I EGL++ L+ L N DIR IN L + L
Sbjct: 620 YELQFRRPTADMIRARLMTICFREGLKIPPPVLDSLIAGTNADIRQLINMLSTVKLDQKT 679
Query: 586 IKYDDIRQRLLSSAKDEDI--SPFTAVDKLFGF----NGGKLRMDERIDLSMSDPDLVPL 639
+ YD +Q LS A ++ I P+ K+ K ++++I+L +D + L
Sbjct: 680 LDYDQGQQ--LSKAWEKHIILKPWDIASKILNAQTFSQSSKSTLNDKIELYFNDHEFSYL 737
Query: 640 LIQENYINYRPSSA----GRD-EVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSS 693
++QENY+ +P+ A G++ ++K L L AA SISDGD+ + I QQW L +
Sbjct: 738 MLQENYLKTQPALASNYSGKERKLKLLELADNAASSISDGDLVDRMIHGSQQQWSLMPTH 797
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSK 753
+ S + PA+ + G ER F WLG NS GK R +++ H+ R S
Sbjct: 798 AAFSFVRPASFVFGN-----MMER--TTFTSWLGNNSKYGKLNRFTKEIQ-GHMRLRASG 849
Query: 754 LGRDTLRLDYFSLLLKQLTEPL 775
RD +R Y L +L PL
Sbjct: 850 -DRDEIRQQYLPALWNRLVRPL 870
>gi|156065801|ref|XP_001598822.1| hypothetical protein SS1G_00911 [Sclerotinia sclerotiorum 1980]
gi|154691770|gb|EDN91508.1| hypothetical protein SS1G_00911 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1047
Score = 305 bits (780), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 202/631 (32%), Positives = 319/631 (50%), Gaps = 56/631 (8%)
Query: 184 GERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKT 243
G PP G E+PEGA +CL GLTFV +G L+++ R+E +L+K++GG++TG+ S KT
Sbjct: 286 GNSAAPPAAGCAEIPEGAENCLAGLTFVFTGVLNTISRDEGIELVKKYGGKITGAPSSKT 345
Query: 244 NYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLP 303
NY++ D +K K +EL + E+GLF +I+A P +A K + +K A
Sbjct: 346 NYVVLGSDAGPSKLRKIRELKIKSVDEEGLFAIIKAMPPNGGDGKAAEKNNEKKAAEE-- 403
Query: 304 KKSPQNIE---------AKSTSAPKAPIERMKTV----ASPAKRKGQNIQQSSLTWTEKY 350
+K Q+ E A + +R+ + PA + + SS WT KY
Sbjct: 404 RKIRQDAEEMDREERRKAAEAEKAEKEAQRLAAAKGKSSIPAAPRKAVVPTSSQLWTTKY 463
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
P N+I GN+ V+++ +WL W KR + +A I+ G PG+GK
Sbjct: 464 APTQMNQICGNKGQVEKIQSWLKGWPNAHKYNFQKRGA---DGLGGYRAIIIHGPPGIGK 520
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL-------S 463
TTAA L ++ G+ +E NASD R K + + E+++N ++
Sbjct: 521 TTAAHLAAKLAGYDILERNASDVRSKKLVE----------TGLSEVLNNTSVLGYFAGDG 570
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
N+D++K K VLIMDEVDGMS+GDRGG+ L K + P+I ICNDR K+K
Sbjct: 571 KNIDKTKK-KIVLIMDEVDGMSSGDRGGVGALAKICKTTDTPMILICNDRRLPKMKPFDF 629
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
D+ F++P + R+ I + EG+++ ++ L + N DIR IN + + L
Sbjct: 630 VTFDMPFKRPTVDMVRSRIATICHREGIKLPVQVIDALIEGSNNDIRQIINMISTVKLDQ 689
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG----FNGGKLRMDERIDLSMSDPDLVPL 639
+ + +D +Q + K + P+ +L G + K ++++I+L +D + PL
Sbjct: 690 TAMDFDQGKQMSKAWEKHVVLKPWDITHQLLGGHMFASSSKSTLNDKIELYFNDHEFTPL 749
Query: 640 LIQENYINYRPSSAGR------DEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQS 692
+IQENY+N +P A R ++K L L+ +AAESISDGD+ + I QQW L +
Sbjct: 750 MIQENYLNTKPQLANRADTPKEHKLKVLQLVDQAAESISDGDLVDRMIHGSQQQWSLMPT 809
Query: 693 SSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKS 752
++ S + PA+ + G G NF WLG NS GK R ++++ H +S
Sbjct: 810 HAVFSTVRPASFISGSM----TGRTNFT---SWLGNNSKYGKLSRYVKEIQSH--MRLRS 860
Query: 753 KLGRDTLRLDYFSLLLKQLTEPLRVLPKDEL 783
R +R Y +L +L L V +D +
Sbjct: 861 SGDRHEIRQQYLPVLWDKLIRRLEVEGRDSV 891
>gi|449550173|gb|EMD41138.1| hypothetical protein CERSUDRAFT_131701, partial [Ceriporiopsis
subvermispora B]
Length = 920
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 206/602 (34%), Positives = 315/602 (52%), Gaps = 40/602 (6%)
Query: 189 PPHKGEKEVPEGAPD-CLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLL 247
P G KEVP A + CL GL+ V +G L S R+EA DL KR+GGRV G S KT+Y++
Sbjct: 198 PIAHGSKEVPTPASENCLAGLSLVFTGELSSFSRDEAVDLAKRYGGRVVGQPSSKTSYVV 257
Query: 248 CDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSP 307
ED +K K+ L ED ++IR P ++ +++K +EK ++ +
Sbjct: 258 VGEDAGPSKLAAIKKNNLKTLNEDQFLELIRTRVPDESTLDEKTRKKIEKEKEAI-RDVA 316
Query: 308 QNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQ 367
+ +E + A K + ++ SS WT++Y P+T EI GN+ V++
Sbjct: 317 KEMERREKQAAKKSAKAGSSIP----------DVSSQLWTDRYAPQTLKEICGNKGQVEK 366
Query: 368 LHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
L WL W+ L +G K+ GK + + +A +++G PG+GKTT+A L ++ GF IE
Sbjct: 367 LQQWLHDWSAS-LKSGFKKPGK--SGMNVFRAVLITGPPGIGKTTSAHLCAKLEGFTPIE 423
Query: 428 VNASDSRGKADAKISKGIGGSNANS--IKELVSNEALSANMDRSKHPKTVLIMDEVDGMS 485
+NASD+R K + S I ++ + + +N A A D+S LIMDEVDGMS
Sbjct: 424 LNASDARSKKLVESSTNIMNASLDGWMVGGAATNAAGVAITDKS-----CLIMDEVDGMS 478
Query: 486 AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQI 545
AGDRGG+ L A IK +KIPIICI NDR + KLK L N +L FRKP I R++ I
Sbjct: 479 AGDRGGVGALTALIKKTKIPIICIANDRGAMKLKPLANVTYNLTFRKPEANVIRSRILSI 538
Query: 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDIS 605
A E +++ +++L DIR +N L LS + +D+ + ++ K ++
Sbjct: 539 AFKENMKIPANVIDQLITGAQSDIRQVLNMLSTWRLSSDTMDFDEGKALAKANEKYSMMT 598
Query: 606 PFTAVDKLFG---FN-GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPS-----SAGRD 656
PF V+KL G F+ + ++++I+L D +PL +QENY+ +PS +
Sbjct: 599 PFNVVNKLLGPYLFSPTSRESLNDKIELYFHDHSFMPLFVQENYLKTQPSKLKHMAGPEQ 658
Query: 657 EVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQG 715
E+K L L+ +A+ SISDGD+ + I Q W L ++ S + PA+ + G G
Sbjct: 659 ELKHLELMEKASASISDGDLVDALIHGSEQHWSLMPLHAVCSTVRPASFLFGMGAGW-NG 717
Query: 716 ERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRD--TLRLDYFSLLLKQLTE 773
+ F WLG+NS K R L D+ A + K+ D +R+ Y + L +
Sbjct: 718 PMAMS-FPQWLGQNSKQNKLSRQLTDVQ----ARMRLKVSGDKPEIRISYIPAMHPHLVK 772
Query: 774 PL 775
PL
Sbjct: 773 PL 774
>gi|363756402|ref|XP_003648417.1| hypothetical protein Ecym_8322 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891617|gb|AET41600.1| Hypothetical protein Ecym_8322 [Eremothecium cymbalariae
DBVPG#7215]
Length = 806
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 207/596 (34%), Positives = 316/596 (53%), Gaps = 42/596 (7%)
Query: 195 KEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAG 254
+E +GA +CL GLT V +G L +++R AE L K++G RVT S+S KT+ ++ ++
Sbjct: 67 EEFAQGASNCLLGLTIVFTGVLPTIDRPTAEALAKKYGARVTKSISSKTSVVILGDEAGP 126
Query: 255 AKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKS 314
K K K+LG + E+G F ++ P A+ + EK L KK + ++ +
Sbjct: 127 KKLEKIKQLGVKAIDENG-FKLLITGTP----AEGGDGFAAEKARQQL-KKQEEEVQREV 180
Query: 315 TSAPKAPIER-----MKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLH 369
K IER +K +P+ +Q L WT KY P + +I GN+ V +L
Sbjct: 181 EELSKKEIEREHKTRLKQAGTPSSALNLVREQDKL-WTVKYAPTSLQQICGNKGAVNKLK 239
Query: 370 TWLAHW--NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
WL +W N++ G K GK + +AA+L G PG+GKTTAA LV Q LG+ +E
Sbjct: 240 NWLTNWAINQQ---NGFKTPGK--DGTGIYRAAMLYGPPGIGKTTAAHLVAQELGYDILE 294
Query: 428 VNASDSRGKADAKISKGIGGSNAN-SIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA 486
NASD R K ++ G+ + N S+ N+ + +R+K V+IMDEVDGMS
Sbjct: 295 QNASDVRSKT--LLNSGVKNALDNTSVVGFFKNQDANVKDNRNKF---VIIMDEVDGMSG 349
Query: 487 GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIA 546
GDRGG+ + + + P+I ICN+R K++ D++FR+P Q + RLM IA
Sbjct: 350 GDRGGVGQMAQFCRKTSSPLILICNERSLPKMRPFDRVVCDIQFRRPDAQSMKARLMTIA 409
Query: 547 NAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISP 606
EG +++ +++L GDIR IN L +S + I +D+ +Q + K+ + P
Sbjct: 410 VREGFKLDPTVIDQLVAATRGDIRQIINLLSTVSKTTRSINHDNSKQISAAWEKNIALKP 469
Query: 607 FTAVDKLF------GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKR 660
+ KLF G + + ++++L D D PL++QENY+N RPS+ +
Sbjct: 470 YDITQKLFEGRIYSGSGPEQFPLYKKMELYFDDFDFTPLMVQENYLNTRPSNLHSGK-SH 528
Query: 661 LSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERNF 719
L LIA AA+SIS GD+ +IR +Q W L S+ S + PA+ + GQ G NF
Sbjct: 529 LELIADAADSISQGDLVEKKIRSAEQLWSLLPLHSIVSSVRPASKVAGQMA----GRINF 584
Query: 720 NRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
+ WLG+NS MGK RLL++LH+H A + + RL Y L ++L +PL
Sbjct: 585 S---SWLGQNSKMGKYYRLLQELHYH--ARLSTSASKSAFRLHYMPTLKRRLLDPL 635
>gi|260951239|ref|XP_002619916.1| hypothetical protein CLUG_01075 [Clavispora lusitaniae ATCC 42720]
gi|238847488|gb|EEQ36952.1| hypothetical protein CLUG_01075 [Clavispora lusitaniae ATCC 42720]
Length = 876
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 204/617 (33%), Positives = 316/617 (51%), Gaps = 69/617 (11%)
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
G E+P AP+CLGGLT V +G L +L+R+ AE + K++G RVT S+SKKT+ ++ E+
Sbjct: 132 GNVELPIAAPNCLGGLTIVFTGVLPNLDRDAAESIAKQYGARVTKSISKKTSLVVIGEEA 191
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIR-----------------------ASKPMKALAQA 289
+K K K+ ++EDG +++R +ALAQ
Sbjct: 192 GPSKVKKIKDFKIKAISEDGFIELLRRMPADGGDGSNAQAAKKKREEEERIIREEALAQE 251
Query: 290 --ESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWT 347
E KK +E+ A+ K+T A + P + ASP + I S WT
Sbjct: 252 RLEQKKELERKKAA----------EKATKAAQGPKQESSRAASPPRE----IPNSEKLWT 297
Query: 348 EKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPG 407
KY P + ++ GN+ +++L WLA+W F + T K + + +AA++SG PG
Sbjct: 298 VKYAPTSTAQLCGNKGQIQKLKNWLANW---FDNAKTNFKNKGADGSGIFRAALISGPPG 354
Query: 408 MGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMD 467
+GKT+AA LV Q LGF +E NASD R SK + SN S+ S +
Sbjct: 355 IGKTSAAHLVAQELGFDILEKNASDVR-------SKSLLNSNIKSVLNNTSVVGFFKHQG 407
Query: 468 RSKHP----KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
+H + LIMDEVDGMS+GD G L A +I+ +P+I ICND+ K+++
Sbjct: 408 EKEHQTNERRFCLIMDEVDGMSSGDHGSAGALSAFCRITNMPMILICNDKSLPKMRTFDR 467
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
DL FR+P + E+ RL+ IA E L+++ + +L DIR IN + +S +
Sbjct: 468 VTLDLPFRRPSEMEMKSRLLTIAFREKLKLDPTVIGQLVQATGNDIRQIINLMSTVSKTQ 527
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG---FN-GGKLRMDERIDLSMSDPDLVPL 639
I +D+ ++ S K + PF V + G FN ++++I++ +D D PL
Sbjct: 528 KNINHDNAKEIANSWKKHSMLKPFAIVSQFLGGGIFNPNAHHSLNDKIEMYFNDIDFTPL 587
Query: 640 LIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRN-QQWQLSQSSSLASC 698
+IQENY+N PS + E L +A AA++IS D N IR + QQW L ++ S
Sbjct: 588 MIQENYLNSLPSVSTPKE--HLERVAAAADAISQSDQINSLIRSSEQQWSLLPFHAVMST 645
Query: 699 IIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDT 758
++PA + G+ + + F WLG+NS K R+L++L +H ++ +
Sbjct: 646 VVPAKEVSGRMTS-------YPAFTSWLGQNSKTMKYTRMLQELQYH--TRMRTSTSKSE 696
Query: 759 LRLDYFSLLLKQLTEPL 775
LRLDY +L K+L++PL
Sbjct: 697 LRLDYVPVLSKKLSQPL 713
>gi|353236695|emb|CCA68684.1| related to replication factor C protein [Piriformospora indica DSM
11827]
Length = 937
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 207/603 (34%), Positives = 318/603 (52%), Gaps = 36/603 (5%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P G KE+P G P+CL L FV +G LDSL REEA+DL KR+GGRVT + S KT++++
Sbjct: 216 PAAPGSKEIPIGQPNCLANLAFVFTGELDSLSREEAQDLAKRYGGRVTTAPSSKTSFVVL 275
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM---KALAQAESKKSVEKVAASLPKK 305
+ +K + ++ L+ED D+IR K + KAL + +K EK+ +
Sbjct: 276 GNNAGPSKLSMIEKHNLKTLSEDQFLDLIRTRKGVLDEKALDKL--RKEEEKIKKDAEEM 333
Query: 306 SPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLV 365
+ E K A K +KR+ + SS WT KY P+ ++I GN+ V
Sbjct: 334 EKKEKEQKKAMATKPG----------SKREQHSFDPSSQLWTTKYAPQNLSQICGNKANV 383
Query: 366 KQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA 425
+++ WL W + +G K GK N + +A ++ G PG+GKTT A L ++ GF
Sbjct: 384 EKVQLWLHDWPQS-RKSGFKYGGK--NAINGYRALLIYGPPGIGKTTTAHLCAKLEGFTP 440
Query: 426 IEVNASDSRGKADAKISKGIGGSNAN--SIKELVSN-EALSANMDRSKHPKTVLIMDEVD 482
IE+NASD+R K + + +N N S+ +S+ + SA ++ + +TVLIMDEVD
Sbjct: 441 IELNASDARSKKLIEACRHPNATNINNTSLDGWMSHGQVNSAGIEITD--RTVLIMDEVD 498
Query: 483 GMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRL 542
GMSAGDRGG+ L A IK +++PIICI ND +QKLK L+ + + F KP +I R+
Sbjct: 499 GMSAGDRGGVVALKALIKKTQVPIICIANDGQAQKLKPLMGIAASIHFTKPTAAQIKSRI 558
Query: 543 MQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDE 602
I E L + +E+L DIR +N L LS + +D+ ++ ++ K
Sbjct: 559 ASICYKEKLNIPPNVIEQLIAGAQSDIRQVLNMLSTWKLSKGSMDFDESKRLSEANQKYT 618
Query: 603 DISPFTAVDKLFG-FNGGKLR---MDERIDLSMSDPDLVPLLIQENYINYRPS----SAG 654
+SPF K+ G + K + E++D +P L+PL +QENY+ +P+ S G
Sbjct: 619 ILSPFNCTSKILGPYTFSKTNRETLGEKMDYYFHEPALMPLFVQENYLKQKPARASDSMG 678
Query: 655 RD-EVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETL 712
++ +K L L+ +A+ SISDGD+ + IR ++Q W L + S + PA+ M+G
Sbjct: 679 QEYNLKVLELMRKASASISDGDMVDQMIRGSEQHWSLMPLHACLSFVRPASFMYGVSGE- 737
Query: 713 EQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLT 772
G ++ F WLG+NS K R L D+ K + +R Y L ++
Sbjct: 738 GYGYKDSASFPQWLGQNSKQTKLQRQLGDIQVK--MRMKVSGDKSEIRRHYIPALFPRIV 795
Query: 773 EPL 775
+PL
Sbjct: 796 QPL 798
>gi|255713750|ref|XP_002553157.1| KLTH0D10296p [Lachancea thermotolerans]
gi|238934537|emb|CAR22719.1| KLTH0D10296p [Lachancea thermotolerans CBS 6340]
Length = 864
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 204/602 (33%), Positives = 324/602 (53%), Gaps = 52/602 (8%)
Query: 194 EKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA 253
E PEGAP+CL GLT V +G L ++ER AE + KR+G RVT S+S KT+ ++ ++
Sbjct: 151 EANFPEGAPNCLLGLTIVFTGQLPTIERGVAEAIAKRYGARVTKSISSKTSVVVLGDEAG 210
Query: 254 GAKSTKAKELGTPFLTEDGLFDMIRASKPMKA---LAQAESKKSVEKVAASLPKKSPQNI 310
K K K+L + EDG F + A P + A ++++ +++ K + + I
Sbjct: 211 PKKLEKIKQLKIKAIDEDG-FKQLVAGMPEEGGDGSAAEKARQKLKQQEEKAQKDAAEMI 269
Query: 311 EAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHT 370
+ + KA R+++ A+ A ++ + +++ WT KY P + I GN+ V +L T
Sbjct: 270 KVEEEQREKA--RRVQSKANTADKR-EPVREEDKLWTVKYAPTSLQHICGNKTSVNKLKT 326
Query: 371 WLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
WL++W + G K G+ + +AA++ G PG+GKTTAA L + LG+ +E NA
Sbjct: 327 WLSNWR-TYQKQGFKNAGR--DGFGVFRAAMVYGPPGIGKTTAAHLAAKELGYDILERNA 383
Query: 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKH------PKTVLIMDEVDGM 484
SD R K+ ++ G+ K + N ++ +SKH V+IMDEVDGM
Sbjct: 384 SDVRSKS--LLNAGV--------KNALDNTSV-VGFFKSKHDGDVNQKNFVIIMDEVDGM 432
Query: 485 SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544
S GDRGG+ + + S +P+I ICN+R S K++ C D++FR+P I RLM
Sbjct: 433 SGGDRGGVGQMAQFCRKSSMPMILICNERNSPKMRPFDRVCLDIQFRRPDPTSIKARLMT 492
Query: 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDI 604
+A E +++ +++L + GDIR IN L +S + I +++ ++ + K+ +
Sbjct: 493 VAVREKFQLDPNIIDKLVEATRGDIRQLINLLSTISTTTKKIGHENAQEIAKAWEKNIAL 552
Query: 605 SPFTAVDKLFGFNGGKLRMD---------ERIDLSMSDPDLVPLLIQENYINYRPSSAGR 655
PF KLF G++ D ++I+L D D PL+IQENY+ RPS
Sbjct: 553 KPFDIAHKLF---DGRIYSDVGSKSFPLYKKIELYFDDFDFAPLMIQENYLQTRPSVLKP 609
Query: 656 DEVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQ 714
+ L+ +A AAESIS GD+ +IR ++Q W L ++ S + PA+ + GQ
Sbjct: 610 GQ-SHLAAVADAAESISQGDLVERKIRSSEQLWSLLPFHAIMSSVRPASKVAGQM----A 664
Query: 715 GERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTE 773
G NF WLG+NS MGK RLL+++ +H L++ KLG LR+DY + K+L +
Sbjct: 665 GRINFT---SWLGQNSKMGKYYRLLQEIQYHTRLSTSTDKLG---LRMDYMPTMKKRLLD 718
Query: 774 PL 775
PL
Sbjct: 719 PL 720
>gi|406607392|emb|CCH41183.1| Replication factor C subunit 1 [Wickerhamomyces ciferrii]
Length = 905
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 204/623 (32%), Positives = 324/623 (52%), Gaps = 64/623 (10%)
Query: 180 FMNFGERKD--PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTG 237
+ F R++ P G E+PEGAP+CL GLT V +G L ++ R++AE + K++G +VT
Sbjct: 217 YHAFKARQNDLPVQTGAFEIPEGAPNCLTGLTIVFTGVLPNIPRDDAEGIAKKYGAKVTK 276
Query: 238 SVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA------------------ 279
S+S KT ++ E+ +K K K+L +TE+G +I+
Sbjct: 277 SISSKTTVVVLGEEAGPSKVRKIKQLKIKAITEEGFIQLIKGMPEEGGDGAEAEKARARR 336
Query: 280 -SKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQN 338
+ KA+ +++ + E+ AA KK I+ S A ++KT
Sbjct: 337 EEEERKAIEESQRMQEEEEAAA---KKRDAAIKKAQNSGNYANSSKLKT----------- 382
Query: 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK 398
S WT +Y P ++I GN+ V++L +WL W KF N K Q S +
Sbjct: 383 --DSEKLWTVRYAPTNISQICGNKSSVQKLQSWLESWPSKF------GNRKPQKGESELR 434
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELV 457
A ++ G PG+GKTTAA LV + LG+ +E NASD R K ++ G+G N S+
Sbjct: 435 AVLIHGPPGIGKTTAAHLVAKSLGYDVLEKNASDVRSKG--LLNSGVGNILNNTSVMGYF 492
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQK 517
+ EA + + +K LIMDEVDGMS GDRGG+ L + + +++P+I ICND+ K
Sbjct: 493 NPEAHATAENGAKF---CLIMDEVDGMSGGDRGGVGQLASYCRTTQVPMILICNDKSLPK 549
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
++ DL FR+P +E+ RLM IA E ++++ +++L + DIR IN L
Sbjct: 550 MRPFDRVTIDLPFRRPSAREMKSRLMTIALREKIKLDPNIIDQLVQATSNDIRQIINLLS 609
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF-GFNGGKLR---MDERIDLSMSD 633
+S + I ++ + + K+ + PF + +L G N K+ + ++++ D
Sbjct: 610 TVSSTQKTINSENSKDISEAWKKNIALKPFDIIPRLLSGQNYSKVSQVPLFKKMEYYFDD 669
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRR-NQQWQLSQS 692
VPL++QENY+N +P + G + K L L+A+AA+SIS GD+ + +I QQW L
Sbjct: 670 HAFVPLMLQENYLNSKPVN-GNTKTKHLELVAKAADSISQGDLVDKKIHSAEQQWSLMPL 728
Query: 693 SSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKS 752
++ S + PA+ + GQ G NF GWLG+NS GK RLL +L + + ++
Sbjct: 729 HAIMSTVRPASFVAGQV----GGRINFT---GWLGQNSKTGKYTRLLTELQYR--SRLRT 779
Query: 753 KLGRDTLRLDYFSLLLKQLTEPL 775
+ RL+Y LL K+L +PL
Sbjct: 780 STDQTEFRLEYIPLLAKKLLDPL 802
>gi|451851018|gb|EMD64319.1| hypothetical protein COCSADRAFT_26479 [Cochliobolus sativus ND90Pr]
Length = 1089
Score = 302 bits (774), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 201/610 (32%), Positives = 317/610 (51%), Gaps = 40/610 (6%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P ++P+G+ CL GL FV +G L R E+++L+KRHGG+VT + SKKTNY++
Sbjct: 330 PAQGSSADMPQGSDTCLAGLNFVFTGVLQKWGRTESQELVKRHGGKVTTAPSKKTNYVVL 389
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRA-----------SKPMKALAQAESKKSVEK 297
ED +K K +++ + EDGL +I ++ + A Q + ++ +EK
Sbjct: 390 GEDAGPSKLQKIRDMNIKTIDEDGLTLLIEKLTAAGNKGDSKAQAVYAEKQRKEQEKIEK 449
Query: 298 VAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNE 357
AA L + + + +A A + TV + A+ G + S WT KY P +
Sbjct: 450 QAAELELEEKKRQKELKATAAAAGNKTASTVTAAAQSAGPEV--DSRLWTTKYAPTSLAH 507
Query: 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLV 417
I GN+ V++L WL + K L TG K GK + + +A ++ G PG+GKTTAA LV
Sbjct: 508 ICGNKASVERLQRWLQAF-PKSLKTGFKLAGK--DGSGVFRAVMIHGPPGIGKTTAAHLV 564
Query: 418 CQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRSKHPKTVL 476
++ G+ +E NASD+R K I G+ G + NS+ + + ++ SK K VL
Sbjct: 565 AKLEGYDIVERNASDTRSKK--LIEDGLRGVLSTNSLHGYFAGDG--KKVEDSKK-KLVL 619
Query: 477 IMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQ 536
IMDEVDGMSAGDRGG+ L A K +++P+I ICNDR K+K DL FR+P
Sbjct: 620 IMDEVDGMSAGDRGGVGALAAVCKKTEVPMILICNDRRQPKMKPFDYVTFDLPFRRPTID 679
Query: 537 EIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLL 596
++ R+M IA EGL++ + L + + DIR +N + + V+ +D +
Sbjct: 680 QVRSRIMTIAFREGLKMPTPVINALIEGSHSDIRQVVNMISTAKIDQEVMDFDKGKAMSK 739
Query: 597 SSAKDEDISPFTAVDKLFG----FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSS 652
+ K + P+ K+ G + K ++E+I+L +D + PL++QENY+ P
Sbjct: 740 NWEKHVVLKPWDITQKILGGGMFASSSKATLNEKIELYFNDHEFSPLMLQENYLGTNPIL 799
Query: 653 AG-----RDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMH 706
+G K L L+++AA+SISDGD+ + I QQW L + ++ S + PA+ +
Sbjct: 800 SGGYSGKEKNFKNLELVSQAADSISDGDLVDRMIHGSQQQWSLMPTHAVFSFVRPASFVS 859
Query: 707 GQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSL 766
G N RF WLGKNS+ K R+++++ H +S R +R Y +
Sbjct: 860 GNTAG------NQTRFTSWLGKNSSANKLSRMVKEIQAH--MRLRSSGDRHEIRQQYVPM 911
Query: 767 LLKQLTEPLR 776
L L + L+
Sbjct: 912 LWTDLVQKLQ 921
>gi|403337686|gb|EJY68066.1| BRCT domain containing protein [Oxytricha trifallax]
Length = 1292
Score = 302 bits (773), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 214/611 (35%), Positives = 323/611 (52%), Gaps = 83/611 (13%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC-------DEDIAGAKS 257
L GLTFVISG + R E L+ GGRVT +VS KT+YL+ E G+K
Sbjct: 498 LEGLTFVISGEFQIISRGRLESLLIEKGGRVTSAVSGKTDYLIVGYKLEDGREVSQGSKF 557
Query: 258 TKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKST-- 315
KA +LG LTE L + I+ ++ S + +AAS +AK T
Sbjct: 558 VKATQLGKTILTESQLEEFIKEKSGDQSFTI--SMRPGLSIAAS--------ADAKMTDE 607
Query: 316 SAPKAPIERMKTVASPAKRKGQNIQQSSLT----WTEKYRPKTPNEIVGNQQLVKQLHTW 371
A KA +E+ KR+ S+ WT+ Y P++ ++VGNQ ++ QL+ W
Sbjct: 608 QALKASVEK--------KRESLAQDNQSMVGKEMWTDLYAPQSVRDLVGNQGVIDQLYEW 659
Query: 372 LAHWNEKFLDTGTK----RNGKKQNDASA--EKAAILSGSPGMGKTTAAKLVCQMLGFQA 425
L W++ + K R G+ D A +LSG PG+GKT++A++VC+ LGF+
Sbjct: 660 LKDWDDVHVRGNKKQVHPRRGQSWQDLPKVNATAVLLSGPPGIGKTSSARIVCKQLGFEV 719
Query: 426 IEVNASDSRGKADAK-------ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478
+E NASD+R K +K I + IK+ +N +S++ + K+V+IM
Sbjct: 720 LETNASDTRNKNSINNMLQVLSSNKSIDYFSVAGIKKQQAN-PVSSDSAGQQTKKSVIIM 778
Query: 479 DEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEI 538
DEVDG+ AGDRGG+ LI IK++K PIICICNDR ++KL+SL+NYC DL+F +P + EI
Sbjct: 779 DEVDGVGAGDRGGLQALIQVIKLTKTPIICICNDRQNRKLQSLLNYCYDLKFNRPSQNEI 838
Query: 539 AKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY---MSLSLSVIKYDDIRQRL 595
AKR+ I +EGL+++ + ++ + DIR +N LQ L +K
Sbjct: 839 AKRVQLICQSEGLQIDNNTINKIIESSGSDIRQIVNILQMWKNQQLDTGFLK-------- 890
Query: 596 LSSAKDED--ISPFTAVDKLFGFNGGKL-----RMDERIDLSMSDPDLVPLLIQENYINY 648
+ +KDE+ I+ F A ++ L + +++DL D DL+PLLIQENY+N
Sbjct: 891 -NISKDENVMINNFDAAHRMLNHGAQSLDIKYPQFRQKMDLFFIDYDLIPLLIQENYLN- 948
Query: 649 RPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQ 708
S R++++ + +A AAE IS GD + Q+R+NQ W L + + S I P L++G
Sbjct: 949 --SMGDRNKLEDIERMASAAEFISLGDSISNQVRKNQDWSLLPNMGICSAIAPCLLVNG- 1005
Query: 709 RETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHF---HHLASRKSKLGRDTLRLDYFS 765
T + RF WLGKNS+ K RL+ +L HH ++ R ++ +Y
Sbjct: 1006 -STF------YPRFPEWLGKNSSQRKAKRLIRELKKVMGHH-----AQADRMEIQNEYTQ 1053
Query: 766 LLLKQLTEPLR 776
L+L L + L+
Sbjct: 1054 LILSYLYKFLK 1064
>gi|429857953|gb|ELA32790.1| chromosome transmission fidelity factor [Colletotrichum
gloeosporioides Nara gc5]
Length = 1038
Score = 302 bits (773), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 211/623 (33%), Positives = 320/623 (51%), Gaps = 62/623 (9%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
PP+ G E+PEG +CL GLTFV +G L ++ REE + L+K++GG+VTGS S KT+Y++
Sbjct: 294 PPNAGAAELPEGEDECLSGLTFVFTGVLQTIGREEGQALVKKYGGKVTGSPSSKTSYVVL 353
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQ 308
+D +K K K+LG + E+GLF++IR + A S K EK A K+ +
Sbjct: 354 GDDAGPSKLRKIKDLGIKTINEEGLFELIR-----RLPAYGGSGKGAEK-AREKKKQEEE 407
Query: 309 NIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLT---------WTEKYRPKTPNEIV 359
NI+ ++ + R AK+ ++ T WT KY P N I
Sbjct: 408 NIKKQALEMEREEKARKAAAEKAAKQAAAARGTTTATAPAAAPVQLWTSKYAPSQLNHIC 467
Query: 360 GNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQ 419
GN+ V+++ WL +W + KR + +A I+SG PG+GKTTAA L +
Sbjct: 468 GNKSQVEKIQAWLRNWQKSRKYDFQKRGA---DGMGGTRAIIISGPPGIGKTTAAHLAAK 524
Query: 420 MLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL-------SANMDRSKHP 472
+ GF IE NASD+R K + N + E+++N +L +D K
Sbjct: 525 LEGFDVIESNASDTRSKKLVE----------NGVSEIMNNTSLLGYFAGDGKKVDGVKK- 573
Query: 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRK 532
VLIMDEVDGMSAGDRGG+ L K +++P+I ICN+R K+K +D+ FR+
Sbjct: 574 NIVLIMDEVDGMSAGDRGGVGALAKFCKKTEVPLILICNERKLPKMKPFDFVTTDVPFRR 633
Query: 533 PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIR 592
P +++ R+M I + EGL++ ++ L + N DIR IN + L + + YD +
Sbjct: 634 PTVEQVRSRIMTICHREGLKLPVPVVDALIEGSNKDIRQIINMISTAKLDQANMNYDQGK 693
Query: 593 QRLLSSAKDEDISPFTAVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLLIQENYI 646
+ K + P+ K+ G GG K ++E+I+L +D + L+IQENY+
Sbjct: 694 AMTKAWEKHVILKPWDICQKMLG--GGLFAPASKTTLNEKIELYFNDHEFSYLMIQENYL 751
Query: 647 NYRPSSAG------RDE-VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASC 698
+P + R+E +K L L+ +AAESISDGD+ + I QQW L + ++ S
Sbjct: 752 KSKPMALNHKGYNKREENLKYLELVDQAAESISDGDLVDRMIHGPQQQWSLMPTHAIFST 811
Query: 699 IIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDT 758
+ PA+ + GQ + F WLG NS GK R + ++H H+ R S +
Sbjct: 812 VRPASYIAGQLMG--------SSFTSWLGNNSKTGKLSRYIREIH-SHMRLRSSGDAHE- 861
Query: 759 LRLDYFSLLLKQLTEPLRVLPKD 781
+R Y +L QL L V KD
Sbjct: 862 IRQQYLPVLWDQLIRRLSVEGKD 884
>gi|389744152|gb|EIM85335.1| DNA replication factor C large subunit [Stereum hirsutum FP-91666
SS1]
Length = 804
Score = 302 bits (773), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 204/600 (34%), Positives = 305/600 (50%), Gaps = 30/600 (5%)
Query: 189 PPHKGEKEVPEGA-PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLL 247
P G K VPE A PDCL GL+FV +G L + R+EA DL KR GGRV S KTN+++
Sbjct: 76 PVAPGSKAVPEPASPDCLAGLSFVFTGELSAFSRDEAVDLAKRFGGRVVAQPSSKTNFVV 135
Query: 248 CDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASK-PMKALAQAESKKSVEKVAASLPKKS 306
+ +K + L+ED ++I + P + E K + ++S
Sbjct: 136 LGSNAGQSKLNAIAKHQLKTLSEDEFLELIATREGPSAGGEEDEKAKKKREKEMKAIRES 195
Query: 307 PQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVK 366
+ +E + + + + + WT++Y P+T EI GN+ V+
Sbjct: 196 AKEMERREK------VVEKGKGTGSGSGGAKVVDAKTQLWTDRYAPQTLKEICGNKAQVE 249
Query: 367 QLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426
+L WL+ W L K+ GK + + + +LSG PG+GKTT+A LV ++ GF I
Sbjct: 250 RLQNWLSSWPNS-LKANFKKPGK--DGMNIFRGVMLSGPPGIGKTTSAHLVAKLAGFTPI 306
Query: 427 EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA 486
E+NASD+R K + S I +N + + E ++A K+ LIMDEVDGMSA
Sbjct: 307 ELNASDTRSKKLVENSTNI--TNTSLDGWMGGGEMMNA-AGIPITDKSCLIMDEVDGMSA 363
Query: 487 GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIA 546
GDRGG+ L A IK +KIPIICI NDR +QK+K L N DL+FRKP I R++ IA
Sbjct: 364 GDRGGVGALAALIKKTKIPIICIANDRSAQKMKPLTNVTFDLKFRKPDAAAIRSRMLTIA 423
Query: 547 NAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISP 606
E +++ +++L VN DIR +N L LS S + +D+ + + K ++P
Sbjct: 424 FKEKMKIPANVIDQLVTGVNSDIRQVLNMLSTWKLSSSTMDFDEGKSLAKMNEKYAVMTP 483
Query: 607 FTAVDKLFG--FNGGKLR--MDERIDLSMSDPDLVPLLIQENYINYRPSSAGRD-----E 657
F + K+ G G R + ++++L D VPL +QENY+ P A + E
Sbjct: 484 FNIIQKMLGPYMFGPTSRETLGDKMELYFQDYSFVPLFVQENYLKTTPVRARNEEGPMKE 543
Query: 658 VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGE 716
+K L L+ +A+ESISDGD+ + I Q W L + S+ S + PA+ ++G +
Sbjct: 544 LKVLDLMEKASESISDGDLVDALIHGPEQHWTLMPTHSVLSTVRPASFLYGPGQGY--AG 601
Query: 717 RNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG-RDTLRLDYFSLLLKQLTEPL 775
N F WLG+NS K R L D+ H R G ++ +R Y L + +PL
Sbjct: 602 PNAMSFPQWLGQNSKQNKLSRQLGDIQIHM---RLKVCGDKNEIRQSYVPALFPHIVQPL 658
>gi|366989649|ref|XP_003674592.1| hypothetical protein NCAS_0B01320 [Naumovozyma castellii CBS 4309]
gi|342300456|emb|CCC68216.1| hypothetical protein NCAS_0B01320 [Naumovozyma castellii CBS 4309]
Length = 871
Score = 301 bits (772), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 211/598 (35%), Positives = 314/598 (52%), Gaps = 47/598 (7%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
+ PEG P+CL GLT V +G L +LER E+E L KR+G RVT S+S KT+ ++ ++
Sbjct: 159 DFPEGQPNCLLGLTIVFTGVLPTLERGESEALAKRYGARVTKSISSKTSVVVLGDEAGPK 218
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIE--AK 313
K K K+L + E+G F + A P A+ + EK ++ Q +E K
Sbjct: 219 KLEKIKQLKVKAIDEEG-FKQLIAGMP----AEGGDGAAAEKARLKKEQEEAQAMEDAQK 273
Query: 314 STSAPKAPIERMKTVASPAK--RKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTW 371
+ A ER+K S K I+ WT KY P +I GN+ V +L +W
Sbjct: 274 IIAQEDAKKERIKLAKSSGAVVSKEDIIRDEDKLWTVKYAPTNLQQICGNKSSVAKLKSW 333
Query: 372 LAHWN----EKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
L++W KF + G R+G + A+L G PG+GKTTAA LV + LG+ +E
Sbjct: 334 LSNWEINKKNKFKNAG--RDG-----TGVFRTAMLYGPPGIGKTTAAHLVAKELGYDILE 386
Query: 428 VNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG 487
NASD R K+ G NA +V ++ + V+IMDEVDGMS G
Sbjct: 387 QNASDVRSKSLL----NAGVKNALDNMSVVGFFKHKDDLADENGKRFVIIMDEVDGMSGG 442
Query: 488 DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
DRGG+ L + + P+I ICN+R K++ C DL+FR+P + RLM IA
Sbjct: 443 DRGGVGQLAQFCRKTSTPMILICNERNLPKMRPFDRVCLDLQFRRPDANSVKSRLMTIAI 502
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDIS-- 605
EG +++ +++L GDIR IN L +S + I +D+I+ +SSA +++I+
Sbjct: 503 REGFKLDPNVIDKLIQTTRGDIRQIINLLSTISKTTKSIGHDNIKA--ISSAWEKNIALK 560
Query: 606 PFTAVDKLF-GF-----NGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
PF KL G+ ++++I L D D PL+IQENY+N +P++ R +
Sbjct: 561 PFDIAHKLLDGYIYTDVGSHSFTLNDKIALYFDDFDFAPLMIQENYLNCKPANLPRGKT- 619
Query: 660 RLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERN 718
+ +A AAESIS GD+ +IR ++Q W L ++ S + PA+ + G G N
Sbjct: 620 HIQAVAEAAESISQGDLVERKIRSSEQLWSLLPLHAVLSSVRPASKVAGHM----TGRIN 675
Query: 719 FNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F+ WLG+NS M K RLL++L +H L++ +K+G LRL+Y LL K+L PL
Sbjct: 676 FS---SWLGQNSKMNKYYRLLQELQYHTRLSTSTNKIG---LRLEYMPLLKKELLNPL 727
>gi|145232225|ref|XP_001399565.1| replication factor C subunit 1 [Aspergillus niger CBS 513.88]
gi|134056478|emb|CAK37567.1| unnamed protein product [Aspergillus niger]
Length = 1058
Score = 301 bits (772), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 200/624 (32%), Positives = 325/624 (52%), Gaps = 42/624 (6%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ +R P G ++PEGA +CL GL+FV +G LD+L R+E ++L+K++GG+VTG+
Sbjct: 302 YAAHAQRSRSPVAGGADIPEGAENCLAGLSFVFTGVLDTLGRDEGQNLVKKYGGKVTGAP 361
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR---------ASKPMKALAQAE 290
S KT+Y++ D K K+ + E+GLF++IR + +
Sbjct: 362 SSKTSYVVLGADAGPKKLATIKQHNLKTINEEGLFELIRRLPANGGDGKAAEQHEAKKKA 421
Query: 291 SKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKY 350
++ + +AA + ++ + A +AP P + ++ K + WT KY
Sbjct: 422 EEEKIRAMAAEIDREEKRKAAATRNTAPSGPQPPSSSQSTTQSTKTDD-----RLWTTKY 476
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
P + N I GN+ +V++L WL W+ K G + GK + + ++ ++ G PG+GK
Sbjct: 477 APTSMNMICGNKGVVEKLQNWLRDWH-KNAKAGFNKPGK--DGSGMYRSVMIHGPPGIGK 533
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRS 469
TTAA LV ++ G+ +E NASD+R K + G+ G + S++ S + ++ +
Sbjct: 534 TTAAHLVAKLEGYDVVETNASDTRSKK--LVENGLLGVLDTTSLQGYFS--GVGKKVESA 589
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
K VLIMDEVDGMSAGDRGG+ L + K + IP+I ICN+R K+K + +L
Sbjct: 590 KK-NLVLIMDEVDGMSAGDRGGVGALASIAKKTHIPLILICNERRLPKMKPFDHVTYELP 648
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
FR+P ++I RL I EGL + L+ L + N DIR IN L + L + + ++
Sbjct: 649 FRRPTAEQIRARLSTICFREGLRIPPQVLDSLIEGTNADIRQVINMLSTVKLDQTNLDFE 708
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENY 645
+Q + K + P+ V K+ K ++++I+L +D + PL++QENY
Sbjct: 709 KGKQMSKAWEKHIVLKPWDIVGKILSAQMFSPSSKATLNDKIELYFNDHEFSPLMLQENY 768
Query: 646 INYRPSSAG-----RDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCI 699
+ RP+ AG ++K+L L+ AA SISDGD+ + I QQW L + ++ S +
Sbjct: 769 LKTRPALAGAYHGREQKLKQLELMDNAASSISDGDLVDRMIHGTQQQWSLMPTHAVFSFV 828
Query: 700 IPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTL 759
PA+ +G +E+ F WLG+NS GK R ++++ H+ R S RD +
Sbjct: 829 RPASFTYGN--MMERPG-----FTSWLGQNSKQGKLWRYIKEIQ-GHMRLRASG-DRDEI 879
Query: 760 RLDYFSLLLKQLTEPLRVLPKDEL 783
R Y LL +L L V KD +
Sbjct: 880 RQQYMPLLWDRLVRRLMVEGKDSV 903
>gi|350634492|gb|EHA22854.1| hypothetical protein ASPNIDRAFT_52205 [Aspergillus niger ATCC 1015]
Length = 1035
Score = 301 bits (772), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 200/624 (32%), Positives = 325/624 (52%), Gaps = 42/624 (6%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ +R P G ++PEGA +CL GL+FV +G LD+L R+E ++L+K++GG+VTG+
Sbjct: 279 YAAHAQRSRSPVAGGADIPEGAENCLAGLSFVFTGVLDTLGRDEGQNLVKKYGGKVTGAP 338
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR---------ASKPMKALAQAE 290
S KT+Y++ D K K+ + E+GLF++IR + +
Sbjct: 339 SSKTSYVVLGADAGPKKLATIKQHNLKTINEEGLFELIRRLPANGGDGKAAEQHEAKKKA 398
Query: 291 SKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKY 350
++ + +AA + ++ + A +AP P + ++ K + WT KY
Sbjct: 399 EEEKIRAMAAEIDREEKRKAAATRNTAPSGPQPPSSSQSTTQSTKTDD-----RLWTTKY 453
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
P + N I GN+ +V++L WL W+ K G + GK + + ++ ++ G PG+GK
Sbjct: 454 APTSMNMICGNKGVVEKLQNWLRDWH-KNAKAGFNKPGK--DGSGMYRSVMIHGPPGIGK 510
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRS 469
TTAA LV ++ G+ +E NASD+R K + G+ G + S++ S + ++ +
Sbjct: 511 TTAAHLVAKLEGYDVVETNASDTRSKK--LVENGLLGVLDTTSLQGYFS--GVGKKVESA 566
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
K VLIMDEVDGMSAGDRGG+ L + K + IP+I ICN+R K+K + +L
Sbjct: 567 KK-NLVLIMDEVDGMSAGDRGGVGALASIAKKTHIPLILICNERRLPKMKPFDHVTYELP 625
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
FR+P ++I RL I EGL + L+ L + N DIR IN L + L + + ++
Sbjct: 626 FRRPTAEQIRARLSTICFREGLRIPPQVLDSLIEGTNADIRQVINMLSTVKLDQTNLDFE 685
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENY 645
+Q + K + P+ V K+ K ++++I+L +D + PL++QENY
Sbjct: 686 KGKQMSKAWEKHIVLKPWDIVGKILSAQMFSPSSKATLNDKIELYFNDHEFSPLMLQENY 745
Query: 646 INYRPSSAG-----RDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCI 699
+ RP+ AG ++K+L L+ AA SISDGD+ + I QQW L + ++ S +
Sbjct: 746 LKTRPALAGAYHGREQKLKQLELMDNAASSISDGDLVDRMIHGTQQQWSLMPTHAVFSFV 805
Query: 700 IPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTL 759
PA+ +G +E+ F WLG+NS GK R ++++ H+ R S RD +
Sbjct: 806 RPASFTYGN--MMER-----PGFTSWLGQNSKQGKLWRYIKEIQ-GHMRLRASG-DRDEI 856
Query: 760 RLDYFSLLLKQLTEPLRVLPKDEL 783
R Y LL +L L V KD +
Sbjct: 857 RQQYMPLLWDRLVRRLMVEGKDSV 880
>gi|358056932|dbj|GAA97282.1| hypothetical protein E5Q_03960 [Mixia osmundae IAM 14324]
Length = 932
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 218/598 (36%), Positives = 307/598 (51%), Gaps = 43/598 (7%)
Query: 197 VPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAK 256
+P+G CL G T V +G L +L R++A DL+KR+GGRVT S KT+Y++ + +K
Sbjct: 214 MPQGKEGCLTGKTIVFTGELANLSRDQASDLVKRYGGRVTSGASSKTSYVVVGHEPGQSK 273
Query: 257 STKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTS 316
+ +L + E + +IR K AQ + K L KK + EAK +
Sbjct: 274 IRQCAKLNITQINEAEFYALIRTEK-----AQIDDK---------LKKKLAEE-EAKIIA 318
Query: 317 APKAPIERMKTVASPA----KRKGQNIQQSSLT---WTEKYRPKTPNEIVGNQQLVKQLH 369
KA +R A K KG+ +S WT KY PK +I GN+ V++L
Sbjct: 319 TAKA-FDRAPKAPVVAAATDKGKGKAADANSAAAQLWTVKYAPKQIKDICGNKGNVEKLK 377
Query: 370 TWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429
TWL ++ +G K+ GK + +A ++SG PG+GKTTAA +V G+ +E+N
Sbjct: 378 TWLETFDTN-RKSGFKKPGK--DGMGVSRAVMISGPPGIGKTTAAHVVANACGYNVVELN 434
Query: 430 ASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR 489
ASD+R K + + +N S+ L+ N D + KT L++DEVDGMS GDR
Sbjct: 435 ASDTRSKKLLQTAFKSTITN-TSLDGYFGEGRLNLNGD-AITDKTCLVLDEVDGMSGGDR 492
Query: 490 GGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAE 549
GG+ L IK +KIPIICI ND SQK++ C L FR+P E+ R+M I E
Sbjct: 493 GGVGALNDFIKKTKIPIICIANDAKSQKMRPFQATCHSLPFRRPTAVELRSRMMSICYKE 552
Query: 550 GLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTA 609
L+V+ +E+LA DIR IN L LS + +D + S K+ +PFT
Sbjct: 553 KLKVSAEVVEQLASGAQSDIRQIINMLSTFKLSAEQMDFDQSKDLANRSVKNALQTPFTL 612
Query: 610 VDKLF--GFNGGKL--RMDERIDLSMSDPDLVPLLIQENYINYRPSSAGR-DEVKR---- 660
+DKLF G G K + E+ + D + +PL +QENY+ + + A R DE +R
Sbjct: 613 MDKLFAPGAFGTKSSPSLSEKQEAYFQDFNAMPLFVQENYLKHEYTIARRCDEAERQHKA 672
Query: 661 LSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLE-QGERN 718
L ARAAE+ISDGD+ + I QQW L + SC+ PAAL +G RN
Sbjct: 673 AELTARAAEAISDGDLVDAMIHGSTQQWSLMPVHGMFSCVRPAALCYGSGAAFNADSSRN 732
Query: 719 FNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG-RDTLRLDYFSLLLKQLTEPL 775
F GW G+NST GK RLL ++ R S G R +R Y LL +L +PL
Sbjct: 733 ARMFPGWFGRNSTQGKLQRLLGEVQIRM---RLSVSGDRKEIRQVYIPTLLPRLVQPL 787
>gi|425765331|gb|EKV04031.1| DNA replication factor C subunit Rfc1, putative [Penicillium
digitatum Pd1]
gi|425766812|gb|EKV05409.1| DNA replication factor C subunit Rfc1, putative [Penicillium
digitatum PHI26]
Length = 1055
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 206/614 (33%), Positives = 315/614 (51%), Gaps = 43/614 (7%)
Query: 181 MNFG--ERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
FG + +DP G KE+P G +CL GL FV +G L+SL REE L+K++GG+V G+
Sbjct: 302 FKFGAQQSRDPAMTGTKEMPVGEENCLAGLAFVFTGVLESLGREEGAQLVKKYGGKVVGA 361
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
S KTNY++ D K + + EDGLF++IR P ++K EK+
Sbjct: 362 PSSKTNYVVLGSDAGPKKLEIIAKHKIKTINEDGLFELIR-RLPANGGDGKAAEKYAEKL 420
Query: 299 AASLPKKSPQNIEAKSTSAPK-------APIERMKTVASPAKRKGQNIQQSSL-TWTEKY 350
A K E + + A + KT A+ ++ + SS WT KY
Sbjct: 421 KADEAKVRAMAAEIDAEERKREEKKRKMATAQGPKTAATTSQTPPSSQPASSGDLWTTKY 480
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
P + + I GN+ V+++ +WL +W+ K+ GK + + +A I+ G PG+GK
Sbjct: 481 APTSTSMICGNKGAVEKVQSWLRNWHAS-AQADFKKGGK--DGSGTYRAVIIHGPPGIGK 537
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSK 470
TTAA LV ++ GF +E NASD+R K + S +G + S++ + + S+
Sbjct: 538 TTAAHLVAKLEGFDVVETNASDTRSKKLVE-SSTLGVLDTTSLQGYFAGQGKQVE---SE 593
Query: 471 HPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRF 530
K VLIMDEVDGMSAGDRGG+ + A +K +KIPII ICN+R QK+K D+ F
Sbjct: 594 KKKLVLIMDEVDGMSAGDRGGVGAVAAIVKKTKIPIILICNERKLQKMKPFDFITYDVPF 653
Query: 531 RKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDD 590
R+P ++I RL I EGL++ L+ L + + DIR IN L L + YD+
Sbjct: 654 RRPTAEQIRARLSTICFREGLKIPPPVLDGLIEGTHADIRQVINMLSTARLDQKGLNYDE 713
Query: 591 IRQRLLSSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYI 646
+Q S K+ + P+ V K+ ++++++L +D + L++QENY+
Sbjct: 714 GKQMSKSWEKNIILKPWDIVGKILSAQMFSPSSTSTLNDKVELYFNDHEFSYLMLQENYL 773
Query: 647 NYRPSSAGR-----DEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCII 700
+P+ AG+ +K L L+ AA SISDGD+ + I QQW L + ++ S +
Sbjct: 774 KTKPALAGKYHGQEQRLKSLELLDNAASSISDGDLVDRMIHGTQQQWSLMPTHAIFSFVR 833
Query: 701 PAALMHGQRETLEQGERNFNR---FGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRD 757
PA+ +G N N F WLG NS GK R ++++ H+ R S RD
Sbjct: 834 PASFQYG----------NLNERPAFTSWLGNNSKHGKLSRFVKEIQ-GHMRLRTSG-NRD 881
Query: 758 TLRLDYFSLLLKQL 771
+R Y LL +++
Sbjct: 882 EIRQQYMPLLQEKM 895
>gi|119481305|ref|XP_001260681.1| chromosome transmission fidelity factor [Neosartorya fischeri NRRL
181]
gi|119408835|gb|EAW18784.1| chromosome transmission fidelity factor [Neosartorya fischeri NRRL
181]
Length = 1064
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 209/613 (34%), Positives = 315/613 (51%), Gaps = 51/613 (8%)
Query: 187 KDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYL 246
+DP G E+P GA +CL GL+FV +G LD+L REE ++L+K++GG+VT + S KT+Y+
Sbjct: 315 RDPVAGGTAELPVGAENCLAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTTAPSSKTSYV 374
Query: 247 LCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKP---------MKALAQAESKKSVEK 297
+ D K K +E + E+GLF++IR P A + + ++
Sbjct: 375 VLGSDAGPNKLKKIQEHNLRTINEEGLFELIRRLPPNGGDSKAAEKHAAKKKVEEVKIKA 434
Query: 298 VAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNE 357
+AA + + + ++AK T PKA + S A Q + WT KY P N
Sbjct: 435 MAAEMEAEEKRKLKAKGTMTPKA------SAGSQAPSAFQGAKVDDQLWTTKYAPTAMNM 488
Query: 358 IVGNQQLVKQLHTWLAHW--NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAK 415
I GN+ V++L TWL +W N KF R GK + + +A ++ G PG+GKTTAA
Sbjct: 489 ICGNKGAVEKLQTWLHNWHKNAKF---NFSRPGK--DGSGVYRAVMIHGPPGIGKTTAAH 543
Query: 416 LVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDR---SKHP 472
LV + G+ +E NASD+R SK + SN I + S + + + S
Sbjct: 544 LVANLEGYDVVETNASDTR-------SKKLVESNLLDILDTTSLQGYFSGEGKKIESTKK 596
Query: 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRK 532
VLIMDEVDGMSAGDRGG+ L++ K + IP+I ICN+R K+K + +L FR+
Sbjct: 597 NLVLIMDEVDGMSAGDRGGVGALVSLAKKTHIPLILICNERRLPKMKPFDHVTYELPFRR 656
Query: 533 PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIR 592
P ++I RL I EGL++ L+ L + N DIR IN L + L + +D +
Sbjct: 657 PTAEQIRARLSTICFREGLKIPPPVLDSLIEGTNADIRQVINMLSTVKLDQQHLDFDKGK 716
Query: 593 QRLLSSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINY 648
+ + K + P+ V K+ K + ++I+L +D + L++QENY+
Sbjct: 717 EMSKAWQKHVILKPWDIVSKILNAQTFSPSSKTTLGDKIELYFNDHEFSYLMLQENYLRT 776
Query: 649 RPSSAG-----RDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPA 702
RP+ AG ++K L L AA SISDGD+ + I QQW L + ++ S + PA
Sbjct: 777 RPTLAGNYQGKEQKLKLLELADNAASSISDGDLVDRMIHGTQQQWSLMPTHAVFSFVRPA 836
Query: 703 ALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLD 762
+ ++G ER F WLG+NS GK R ++++ H+ R S RD +R
Sbjct: 837 SFIYGN-----MVER--PGFTSWLGQNSKQGKLWRYVKEIQ-GHMRLRASG-DRDEIRQQ 887
Query: 763 YFSLLLKQLTEPL 775
Y LL +L L
Sbjct: 888 YIPLLWNKLVRRL 900
>gi|19113399|ref|NP_596607.1| DNA replication factor C complex subunit Rfc1 [Schizosaccharomyces
pombe 972h-]
gi|30913227|sp|O60182.1|RFC1_SCHPO RecName: Full=Replication factor C subunit 1; Short=Replication
factor C1
gi|3116125|emb|CAA18875.1| DNA replication factor C complex subunit Rfc1 [Schizosaccharomyces
pombe]
Length = 934
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 203/596 (34%), Positives = 310/596 (52%), Gaps = 61/596 (10%)
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
G K VPEG DCL G++FVI+G L++L R+EA DLIK++GG+VTG+ S +T+++L E+
Sbjct: 229 GSKPVPEGNSDCLSGISFVITGILETLTRQEATDLIKQYGGKVTGAPSVRTDFILLGENA 288
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKK--SPQNI 310
K K+ P + EDGLF +I LP +
Sbjct: 289 GPRKVETIKQHKIPAINEDGLFYLI----------------------THLPASGGTGAAA 326
Query: 311 EAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHT 370
+A + + ++TVA + Q S + WT KY P + +I GN+ +V++L
Sbjct: 327 QAAQQKKEQEEKKILETVARMDDSNKKESQPSQI-WTSKYAPTSLKDICGNKGVVQKLQK 385
Query: 371 WLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
WL +++ + + N + KA +LSG PG+GKTTAA LV ++ G+ +E+NA
Sbjct: 386 WLQDYHK---NRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGYDVLELNA 442
Query: 431 SDSRGK--ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD 488
SD+R K D ++ G +++ S+ +A +M +S+ VLIMDE+DGMS+GD
Sbjct: 443 SDTRSKRLLDEQL---FGVTDSQSLAGYFGTKANPVDMAKSR---LVLIMDEIDGMSSGD 496
Query: 489 RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
RGG+ L IK S IPIICICNDR KL+ L DLRFR+P + R+M IA
Sbjct: 497 RGGVGQLNMIIKKSMIPIICICNDRAHPKLRPLDRTTFDLRFRRPDANSMRSRIMSIAYR 556
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFT 608
EGL+++ A+++L D+R IN L LS S + + + + +S K + P+
Sbjct: 557 EGLKLSPQAVDQLVQGTQSDMRQIINLLSTYKLSCSEMTPQNSQAVIKNSEKHIVMKPWD 616
Query: 609 AVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRD-----E 657
+ +GG K ++++++L +D + L++QENY+N P ++
Sbjct: 617 ICSRY--LHGGMFHPSSKSTINDKLELYFNDHEFSYLMVQENYLNTTPDRIRQEPPKMSH 674
Query: 658 VKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGE 716
+K L LI+ AA S SD D+ + I QQ W L + +L SC+ PA+ + G G
Sbjct: 675 LKHLELISSAANSFSDSDLVDSMIHGPQQHWSLMPTHALMSCVRPASFVAG------SGS 728
Query: 717 RNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQL 771
R RF WLG NS K R+L ++ H L +KL LR Y +L + L
Sbjct: 729 RQI-RFTNWLGNNSKTNKLYRMLREIQVHMRLKVSANKLD---LRQHYIPILYESL 780
>gi|396463781|ref|XP_003836501.1| similar to chromosome transmission fidelity factor [Leptosphaeria
maculans JN3]
gi|312213054|emb|CBX93136.1| similar to chromosome transmission fidelity factor [Leptosphaeria
maculans JN3]
Length = 1098
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 214/624 (34%), Positives = 323/624 (51%), Gaps = 49/624 (7%)
Query: 186 RKDP-PHKGEK-EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKT 243
R DP P G ++P G+ CL GL FV +G L R EA++L+KRHGG+VTG+ SKKT
Sbjct: 341 RADPAPLSGSSGDMPSGSETCLAGLNFVFTGVLQRWGRTEAQELVKRHGGKVTGAPSKKT 400
Query: 244 NYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMI--------RASKPMKALAQAESKKSV 295
NY++ D +K K K++ + EDGL +I + +A + + +K
Sbjct: 401 NYVVLGSDAGPSKLQKIKDMDIKTIDEDGLTLLIEKLTEAGNKGDSKAQAAYKEQQRKEE 460
Query: 296 EKV---AASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRP 352
EK+ AA L ++ + I K A R + + I S L WT KY P
Sbjct: 461 EKIRKQAAELEQE--EMIHMKDMKVANAASGRQTATNA--AATAEPIIDSRL-WTTKYAP 515
Query: 353 KTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTT 412
T ++I GN+ +V+++ WL + K L TG K GK + + +A +L G PG+GKTT
Sbjct: 516 TTLSQICGNKIVVEKIQRWLQMY-PKNLKTGFKLAGK--DGSGVFRAIMLHGPPGIGKTT 572
Query: 413 AAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRSKH 471
AA LV ++ G+ +E NASD+R K I G+ G N NS+ + + N++ SK
Sbjct: 573 AAHLVAKLEGYDIVERNASDTRSKK--LIEDGLRGVLNTNSLHGYFAGDG--KNVEESKK 628
Query: 472 PKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFR 531
K VLIMDEVDGMSAGDRGG+ L A K ++IP+I ICNDR K+K DL FR
Sbjct: 629 -KLVLIMDEVDGMSAGDRGGVGALAAVCKKTEIPMILICNDRRLPKMKPFDFVTYDLPFR 687
Query: 532 KPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
+P ++ R+M IA EGL++ + L + + DIR +N + L + +D
Sbjct: 688 RPTVDQVRSRIMTIAFREGLKIPGPVVNALIEGSHADIRQVVNMISTAKLDQDAMDFDRG 747
Query: 592 RQRLLSSAKDEDISPFTAVDKLFGFNGGKL------RMDERIDLSMSDPDLVPLLIQENY 645
+Q S K + P+ K+ G GG ++++I+L +D + PL++QENY
Sbjct: 748 KQMSKSWEKHVILKPWDITQKILG--GGMFASSSNATLNDKIELYFNDHEFSPLMLQENY 805
Query: 646 INYRPS-----SAGRDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCI 699
+ P S ++ L L ++AA+SISDGD+ + I QQW L + ++ S +
Sbjct: 806 LGTNPILSLGLSGKEKNLRNLELASQAADSISDGDLVDRMIHGSQQQWSLMPTHAVFSFV 865
Query: 700 IPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTL 759
PA+ + G N RF WLGKNS+ K R+++++ H +S R +
Sbjct: 866 RPASFVSGSTAN------NQTRFTSWLGKNSSGNKLSRMIKEIQAH--MRLRSSGDRHEV 917
Query: 760 RLDYFSLLLKQLTEPLRVLPKDEL 783
R Y +L +L + L+ KD +
Sbjct: 918 RQQYVPILWTELVQKLQKQGKDAV 941
>gi|403177362|ref|XP_003888779.1| replication factor C subunit 1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375172838|gb|EHS64742.1| replication factor C subunit 1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 776
Score = 299 bits (765), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 208/609 (34%), Positives = 310/609 (50%), Gaps = 57/609 (9%)
Query: 185 ERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTN 244
ER P G K +PEGA +CL GLTFV +G L+SL RE+A+ L KR+GGRVT S S KT+
Sbjct: 43 ERAGPSAPGSKPIPEGAENCLAGLTFVFTGELESLSREDAQTLAKRYGGRVTTSPSSKTS 102
Query: 245 YLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPK 304
+++ D K K+ +TED ++I SKP + KK ++V K
Sbjct: 103 FVVLGSDAGPKKLEMIKKHKIKTITEDEFLNLI-GSKPSGEVDAKTLKKQEDEV-----K 156
Query: 305 KSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL 364
K Q AK PK + KT A GQ WT KY PK ++ GN+
Sbjct: 157 KVEQ--AAKELGPPKGSVSE-KTSA------GQ-------LWTVKYAPKNLGDLCGNKTQ 200
Query: 365 VKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424
+ ++ WL W+ +F + + GK + + +LSG PG+GKT+AA LV + G++
Sbjct: 201 IDKIQAWLRDWSVEFRRSNFTKPGK--DGLGMYRCVVLSGPPGVGKTSAAHLVAKAEGYE 258
Query: 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRS--KHPKTVLIMDEVD 482
IE+NASD+R K + K+++ N +++ ++ S + K VLIMDEVD
Sbjct: 259 VIELNASDTRSKKLLE----------TGFKDIIGNSSIAGFLETSTKRSEKLVLIMDEVD 308
Query: 483 GMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRL 542
GMSAGDRGG+ L A IK S+IPII I ND K+K L L FR+P I R+
Sbjct: 309 GMSAGDRGGVGALNALIKKSQIPIIAIANDMSIPKMKPLKATALSLVFRRPNVNMIRSRM 368
Query: 543 MQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS------VIKYDDIRQRLL 596
M IA EG+++ A+++L DIR IN L + S + +D RQ
Sbjct: 369 MSIAFKEGMKIPPNAIDQLVAGSQSDIRQIINMLSTWKIGNSEQGPSKTMDFDQARQLTS 428
Query: 597 SSAKDEDISPFTAVDKLFGFNGG----KLRMDERIDLSMSDPDLVPLLIQENYINY---- 648
+ KD +SP+ + K+F + ++ +L D D++PL +Q+ Y+ +
Sbjct: 429 ENEKDAIMSPWALMSKIFAPQTWSQMTSMTFIDKCNLYFHDHDMLPLFVQDGYVKHDYGQ 488
Query: 649 -RPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMH 706
R + K++ L++ AA+SI+DGD+ + I QQ W L + S + PA H
Sbjct: 489 ARTYAGQEKAAKKMELLSLAADSIADGDLVDRMIHGPQQHWSLMPLHGVFSVVRPAYYCH 548
Query: 707 GQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSL 766
G + G+ F W GKNST GK R + ++H + + S R+TL ++Y +
Sbjct: 549 GPSTS---GDFGGFSFPSWFGKNSTQGKLSRTMGEIH-GRMRMKISGDKRETL-MNYLPV 603
Query: 767 LLKQLTEPL 775
L +L +PL
Sbjct: 604 LYPRLMDPL 612
>gi|393215252|gb|EJD00743.1| DNA replication factor C, large subunit [Fomitiporia mediterranea
MF3/22]
Length = 967
Score = 299 bits (765), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 229/710 (32%), Positives = 348/710 (49%), Gaps = 71/710 (10%)
Query: 94 HKADDDDDDFVPPSVKKNSVGATPSKKLKSGSGRAVAQKSV-DIDDDEEEDVKKTESPLK 152
HK DDDD + + + + +K +K+ SG + S+ +D D+ +D KK+E
Sbjct: 167 HKTDDDDFEDEMSDEDNDFIVSEKAKPVKAKSGSTKVKTSIRKVDGDDTKDTKKSE---- 222
Query: 153 SSGRGRGGRGASGAP-------AVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCL 205
A+ AP A R G P G K +P+GAP+CL
Sbjct: 223 ----------AANAPKQKPNWIAKKAARSAG------------PAAPGSKPIPDGAPNCL 260
Query: 206 GGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGT 265
GL+FV +G L SL R+EA DL KR+GGRV S KT+Y++ ++ +K +
Sbjct: 261 AGLSFVFTGELSSLSRDEAVDLAKRYGGRVVLQPSSKTSYVVVGDNAGPSKLAAIDKHKL 320
Query: 266 PFLTEDGLFDMI--RASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIE 323
+ ED D+I R+S A ++K + K A + + + + A+ KA E
Sbjct: 321 RKINEDEFLDLIATRSSDD----ADDKTKTKLAKEEAEMRRAAEEMARAER----KAEKE 372
Query: 324 RMKTVASPAKRKGQN-----IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK 378
R K + S A G + S WT +Y PK EI GN+ V++L WL W+
Sbjct: 373 RAKAIMSAASGGGTARVKPPVDMRSQLWTVRYAPKMLKEICGNKGQVEKLQLWLQDWSSS 432
Query: 379 FLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKAD 438
+ K +N + +A +++G PG+GKTT+A L ++ GF IE+NASD+R K
Sbjct: 433 LKSSFKKPG---KNGMNIFRAVLITGPPGIGKTTSAHLCAKLAGFTPIELNASDARSKKL 489
Query: 439 AKISKGIGGSNAN---SIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADL 495
+ S I ++ + S K + ++ S K+ LIMDEVDGMSAGDRGG+ L
Sbjct: 490 VENSTNIANTSLDGWMSGKRTTPKTVNATGIEISD--KSCLIMDEVDGMSAGDRGGVGAL 547
Query: 496 IASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNE 555
+ IK +KIPIICI NDR +QKLK L+N +L FRKP + R+M IA E +++
Sbjct: 548 NSLIKKTKIPIICIANDRNAQKLKPLLNTTFNLSFRKPDAAAVRSRIMTIAFKEKMKIPA 607
Query: 556 IALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615
+++L DIR +N L LS S + +D+ + + K ++PF K+ G
Sbjct: 608 NVVDQLVQGAQSDIRQVLNMLSTWKLSSSSMDFDEGKNLAKINEKYTIMTPFNVTSKMLG 667
Query: 616 ---FNG-GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSA----GRDE-VKRLSLIAR 666
F+ + + ++++L D VPL IQENY+ P+ GR++ ++ L L+ +
Sbjct: 668 PYLFSSTARETLGDKMELYFHDHAFVPLFIQENYLKTEPARLRAHDGREKGLQHLRLMDK 727
Query: 667 AAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGW 725
AA SISD D+ + I Q W L ++ S + PA+ ++G G N F W
Sbjct: 728 AASSISDSDLVDSLIHGPEQHWALMPLHAVISTVRPASFLYGTGSGY--GGPNAMSFPQW 785
Query: 726 LGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
LG+NS GK R L D+ K + +R Y L +L +PL
Sbjct: 786 LGQNSKRGKLTRQLGDVQIR--MRLKVSGDKPEIRQHYIPSLFPRLVKPL 833
>gi|451996322|gb|EMD88789.1| hypothetical protein COCHEDRAFT_1196708 [Cochliobolus
heterostrophus C5]
Length = 1070
Score = 298 bits (762), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 202/612 (33%), Positives = 318/612 (51%), Gaps = 44/612 (7%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P ++P+G+ CL GL FV +G L R E+++L+KRHGG+VT + SKKTNY++
Sbjct: 312 PAQGSSADMPQGSDTCLAGLNFVFTGVLQKWGRTESQELVKRHGGKVTTAPSKKTNYVVL 371
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRA-----------SKPMKALAQAESKKSVEK 297
ED +K K +++ + EDGL +I ++ + A Q + ++ +EK
Sbjct: 372 GEDAGPSKLQKIRDMNIKTIDEDGLTLLIEKLTAAGNKGDSKAQAVYAEKQRKEQEKIEK 431
Query: 298 VAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNE 357
AA L + + + +A A + V + + G + S WT KY P +
Sbjct: 432 QAAELELEEKKRQKELKAAAAAAGNKASSAVTAAVQSAGPEV--DSRLWTTKYAPTSLAH 489
Query: 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLV 417
I GN+ V++L WL + K L TG K GK + + +A ++ G PG+GKTTAA LV
Sbjct: 490 ICGNKASVERLQRWLQAF-PKSLKTGFKLAGK--DGSGVFRAVMIHGPPGIGKTTAAHLV 546
Query: 418 CQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRSKHPKTVL 476
++ G+ +E NASD+R K I G+ G + NS+ + + ++ SK K VL
Sbjct: 547 AKLEGYDIVERNASDTRSKK--LIEDGLRGVLSTNSLHGYFAGDG--KKVEGSKK-KLVL 601
Query: 477 IMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQ 536
IMDEVDGMSAGDRGG+ L A K +++P+I ICNDR K+K DL FR+P
Sbjct: 602 IMDEVDGMSAGDRGGVGALAAVCKKTEVPMILICNDRRQPKMKPFDYVTFDLPFRRPTVD 661
Query: 537 EIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLL 596
++ R+M IA EGL+++ + L + + DIR +N + + V+ YD +
Sbjct: 662 QVRSRIMTIAFREGLKMSTPVINALIEGSHSDIRQVVNMISTAKIDQEVMDYDKGKAMSK 721
Query: 597 SSAKDEDISPFTAVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLLIQENYINYRP 650
+ K + P+ K+ G GG K ++E+I+L +D + PL++QENY+ P
Sbjct: 722 NWEKHVVLKPWDITQKILG--GGMFAASSKATLNEKIELYFNDHEFSPLMLQENYLGTNP 779
Query: 651 SSAG-----RDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAAL 704
+G +K L L+++AA+SISDGD+ + I QQW L + ++ S + PA+
Sbjct: 780 ILSGGYSGKEKNLKNLELVSQAADSISDGDLVDRMIHGSQQQWSLMPTHAVFSFVRPASF 839
Query: 705 MHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYF 764
+ G N RF WLGKNS+ K R+++++ H +S R +R Y
Sbjct: 840 VAGNTAG------NQTRFTSWLGKNSSANKLSRMVKEIQAH--MRLRSSGDRHEIRQQYV 891
Query: 765 SLLLKQLTEPLR 776
+L L + L+
Sbjct: 892 PMLWTDLVQKLQ 903
>gi|358365643|dbj|GAA82265.1| chromosome transmission fidelity factor [Aspergillus kawachii IFO
4308]
Length = 1058
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 198/624 (31%), Positives = 325/624 (52%), Gaps = 42/624 (6%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ +R P G ++P+GA +CL GL+FV +G LD+L R+E ++L+K++GG+VTG+
Sbjct: 302 YAAHAQRSRSPVAGGADIPQGAGNCLAGLSFVFTGVLDTLGRDEGQNLVKKYGGKVTGAP 361
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR---------ASKPMKALAQAE 290
S KT+Y++ D K K+ + E+GLF++IR + +
Sbjct: 362 SSKTSYVVLGADAGPKKLATIKQHNLKTINEEGLFELIRRLPANGGDGKAAEQHEAKKKA 421
Query: 291 SKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKY 350
++ + +AA + ++ + A ++AP P + ++ K + WT KY
Sbjct: 422 EEEKIRAMAAEIDREEKRKAAAARSTAPSGPQPPSSSQSTTQSTKTDD-----RLWTTKY 476
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
P + N I GN+ +V++L WL W+ K G + GK + + ++ ++ G PG+GK
Sbjct: 477 APTSMNMICGNKGVVEKLQNWLRDWH-KNAKAGFNKPGK--DGSGMYRSVMIHGPPGIGK 533
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRS 469
TTAA LV ++ G+ +E NASD+R K + G+ G + S++ S + ++ +
Sbjct: 534 TTAAHLVAKLEGYDVVETNASDTRSKK--LVENGLLGVLDTTSLQGYFS--GVGKKVESA 589
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
K VLIMDEVDGMSAGDRGG+ L + K + IP+I ICN+R K+K + +L
Sbjct: 590 KK-NLVLIMDEVDGMSAGDRGGVGALASIAKKTHIPLILICNERRLPKMKPFDHVTYELP 648
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
FR+P ++I RL I EGL + L+ L + N DIR IN L + L + + ++
Sbjct: 649 FRRPTAEQIRARLSTICFREGLRIPPQVLDSLIEGTNADIRQVINMLSTVKLDQTNLDFE 708
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENY 645
+Q + K + P+ V K+ K ++++I+L +D + PL++QENY
Sbjct: 709 KGKQMSKAWEKHIVLKPWDIVGKILSAQMFSPSSKATLNDKIELYFNDHEFSPLMLQENY 768
Query: 646 INYRPSSAG-----RDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCI 699
+ RP+ G ++K+L L+ AA SISDGD+ + I QQW L + ++ S +
Sbjct: 769 LKTRPALTGAYHGREQKLKQLELMDNAASSISDGDLVDKMIHGTQQQWSLMPTHAVFSFV 828
Query: 700 IPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTL 759
PA+ +G +E+ F WLG+NS GK R ++++ H+ R S RD +
Sbjct: 829 RPASYTYGN--MMER-----PGFTSWLGQNSKQGKLWRYIKEIQ-GHMRLRASG-DRDEI 879
Query: 760 RLDYFSLLLKQLTEPLRVLPKDEL 783
R Y LL +L L V KD +
Sbjct: 880 RQQYMPLLWDRLVRRLMVEGKDSV 903
>gi|367055380|ref|XP_003658068.1| hypothetical protein THITE_2124524 [Thielavia terrestris NRRL 8126]
gi|347005334|gb|AEO71732.1| hypothetical protein THITE_2124524 [Thielavia terrestris NRRL 8126]
Length = 1058
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 212/642 (33%), Positives = 319/642 (49%), Gaps = 74/642 (11%)
Query: 174 GGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGG 233
GGG G PP G E+PEG +CL G TFV +G L +L REE + L+KR+GG
Sbjct: 303 GGGNTG--------PPPMAGAAEIPEGEENCLLGKTFVFTGLLKTLSREEGQALVKRYGG 354
Query: 234 RVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKK 293
+VT + S KT++++ +D +K K KE G + E+GLF +IR M A A K
Sbjct: 355 KVTSAPSSKTDFVVLGDDAGPSKLRKIKEHGIKTIDEEGLFYLIRT---MPAYGGA--GK 409
Query: 294 SVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTV-------------ASPAKRKGQNIQ 340
EK K Q E + A +E+ + A+ +Q
Sbjct: 410 GAEKA------KQKQEAEERKVREEAARMEKEEQARQAEAEKAAKAAAAARGAPAPVAVQ 463
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAA 400
S WT KY P N+I GN+ LV+++ WL +W + KR + +A
Sbjct: 464 APSQLWTTKYAPTQLNQICGNKSLVERIQAWLRNWPKSRKYNFQKRGA---DGMGGYRAI 520
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
I+SG PG+GKTTAA L ++ G+ +E NASD+R K + G+G E+++N
Sbjct: 521 IISGPPGIGKTTAAHLAARLEGYDVLESNASDTRSKK--LVESGVG--------EVLNNT 570
Query: 461 AL-------SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDR 513
+L +D SK K VL+MDEVDGMSAGDRGG+ L K + +P+I ICNDR
Sbjct: 571 SLLGFFAGDGKKVDASKK-KIVLVMDEVDGMSAGDRGGVGALAKFCKKTDVPLILICNDR 629
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
K+K + D+RF++P +I R+M I + EGL++ + L + DIR I
Sbjct: 630 RLPKMKPFDHVAFDIRFQRPTVDQIRSRIMTICHREGLKLPVPVVNALIEGSGRDIRQII 689
Query: 574 NQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG---FN-GGKLRMDERIDL 629
N L L + + +D + + K + P+ K+ F+ K ++++I+L
Sbjct: 690 NMLSTAKLDQTTMDFDQSKAMTKAWEKHVILKPWDICQKMIAGGLFSPASKATLNDKIEL 749
Query: 630 SMSDPDLVPLLIQENYINYRPSS-AGR------DEVKRLSLIARAAESISDGDIFNVQIR 682
+D + L+IQENY+ +P++ +G+ ++K L L+ AAESISDGD+ + I
Sbjct: 750 YFNDHEFSFLMIQENYLRSKPAALSGKGYNPQMQKLKHLELVDHAAESISDGDLVDRMIH 809
Query: 683 RNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLED 741
QQ W L + ++ S + P++ + G EQ F WLG NS GK R + +
Sbjct: 810 GPQQHWSLMPTHAVFSTVRPSSFIAGV--FTEQ-----VMFTSWLGNNSKYGKLARFVRE 862
Query: 742 LHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDEL 783
+H H KS + +R Y +L QL + L V KD +
Sbjct: 863 IHSH--MRLKSSGDHNEIRQQYLPVLWHQLIKRLEVEGKDAV 902
>gi|330921995|ref|XP_003299650.1| hypothetical protein PTT_10692 [Pyrenophora teres f. teres 0-1]
gi|311326573|gb|EFQ92247.1| hypothetical protein PTT_10692 [Pyrenophora teres f. teres 0-1]
Length = 1085
Score = 296 bits (758), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 204/603 (33%), Positives = 326/603 (54%), Gaps = 40/603 (6%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
++P+G+ CL GLTFV +G L R E+++L+KRHGG+VT + SKKT+Y++ D +
Sbjct: 346 DMPQGSDTCLAGLTFVFTGVLQKWGRTESQELVKRHGGKVTTAPSKKTSYVVLGSDAGYS 405
Query: 256 KSTKAKELGTPFLTEDGLFDMIR----ASKPMKALAQAESKKS-------VEKVAASLPK 304
K K +++ + EDGL +I A + AQA+ ++ +E++AA + +
Sbjct: 406 KLAKIRDMNIKTIDEDGLTQLIEKLTAAGNKGDSKAQADYREKQRKEQEKIEQLAAEM-E 464
Query: 305 KSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL 364
K Q + ++T+A KA R + + A + + S L WT KY P + ++I GN+
Sbjct: 465 KDEQKRQKEATAAAKAAGNRTASAVTAAAQSAEPAVDSRL-WTTKYAPTSLSQICGNKAT 523
Query: 365 VKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424
V+++ WL + K L TG K GK + + +A IL G PG+GKTTAA LV ++ G+
Sbjct: 524 VEKIQRWLQMF-PKNLKTGFKLAGK--DGSGVFRAIILHGPPGIGKTTAAHLVAKLEGYD 580
Query: 425 AIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG 483
+E NASD+R K I G+ G + NS+ + + ++ SK K VLIMDEVDG
Sbjct: 581 IVERNASDTRSKK--LIEDGLRGVLSTNSLHGYFAGDG--KKVEGSKK-KLVLIMDEVDG 635
Query: 484 MSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLM 543
MSAGDRGG+ L K +++P+I ICNDR K+K DL FR+P +I R+M
Sbjct: 636 MSAGDRGGVGALATVCKKTEVPMILICNDRRLPKMKPFDYVTYDLPFRRPTVDQIRSRIM 695
Query: 544 QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDED 603
I EGL + + L + + DIR +N + L +V+ +D + + K
Sbjct: 696 TITFREGLRMPPPVINALIEGSHADIRQVVNMISTAKLDQTVMDFDKGKTMSKNWEKHVV 755
Query: 604 ISPFTAVDKLFG----FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRP----SSAGR 655
+ P+ K+ G + K ++++I+L +D + PL++QENY+ P + +G+
Sbjct: 756 LKPWDITQKILGGGMFASSSKATLNDKIELYFNDHEFSPLMLQENYLGTNPIQSLNYSGK 815
Query: 656 DE-VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLE 713
++ +K L L+++AA+SISDGD+ + I QQW L + ++ S + PA+ + G
Sbjct: 816 EKNLKNLELVSQAADSISDGDLVDRMIHGSQQQWGLMPTHAVFSFVRPASFISGSTAG-- 873
Query: 714 QGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTE 773
N RF WLGKNST K R+++++ H +S R +R Y LL L +
Sbjct: 874 ----NQTRFTSWLGKNSTTNKLSRMIKEIQAH--MRLRSSGDRHEVRQQYVPLLWTDLVQ 927
Query: 774 PLR 776
L+
Sbjct: 928 KLQ 930
>gi|346972444|gb|EGY15896.1| replication factor C subunit 1 [Verticillium dahliae VdLs.17]
Length = 1040
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 206/615 (33%), Positives = 316/615 (51%), Gaps = 54/615 (8%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P + G E+PEG +CL GL FV +G L ++ REEA+ L+KR+GG+VTGS S KT+Y++
Sbjct: 297 PLNPGSAELPEGEDECLTGLAFVFTGVLQTIGREEAQALVKRYGGKVTGSPSSKTSYVVL 356
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIR-----------ASKPMKALAQAESKKSVEK 297
ED +K K ++LG + E GLF++IR A K + QAE K ++
Sbjct: 357 GEDAGPSKLKKIQDLGIKTIDETGLFELIRRLPAYGGGGKGAEKAREKKKQAEEKIKIDA 416
Query: 298 VAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNE 357
+K+ + +EA+ + A PA Q WT KY P +
Sbjct: 417 REMEREEKA-RKLEAEKAAQKAAAARGSAAPVKPAAPVAQ-------LWTSKYAPTQLSH 468
Query: 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLV 417
I GN+ V+++ WL +W + KR + AE+A I+SG PG+GKTTAA L
Sbjct: 469 ICGNKAQVEKIQNWLKNWQKSRKWDFQKRGA---DGMGAERAIIISGPPGIGKTTAAHLA 525
Query: 418 CQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRSKHPKTVL 476
++ GF IE NASD+R K + +G+ N S+ S + +D K VL
Sbjct: 526 AKLEGFDVIESNASDTRSKR--LVEEGVSEVMNNTSLLGFFSGDG--KKLDAGKK-NIVL 580
Query: 477 IMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQ 536
IMDEVDGMSAGDRGG+ L K +++P+I ICN+R K+K + D++FR+P
Sbjct: 581 IMDEVDGMSAGDRGGVGALAKYCKKTEVPLILICNERRLPKMKPFDHVAMDIQFRRPTVD 640
Query: 537 EIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLL 596
++ R+M I + EGL++ ++ L + N DIR IN + L S + +D +
Sbjct: 641 QVRSRIMTICHREGLKLPPPVVDALIEGSNKDIRQIINMISTAKLDQSAMDFDQGKAMTK 700
Query: 597 SSAKDEDISPFTAVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLLIQENYINYRP 650
+ K + P+ K+ G GG K ++++I+L +D + L+IQENY+ +P
Sbjct: 701 AWEKHIVLKPWDICQKMLG--GGLFAPSSKATLNDKIELYFNDHEFSYLMIQENYLRCKP 758
Query: 651 SSAG------RDE-VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPA 702
+ R+E +K L L +AAESISDGD+ + I QQW L + ++ S + PA
Sbjct: 759 MALNNRGYNKREENLKALELFDQAAESISDGDLVDRMIHGPQQQWSLMPTHAIFSTVRPA 818
Query: 703 ALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLD 762
+L+ GQ + F WLG NS GK R + ++H H +S + +R
Sbjct: 819 SLIAGQLMG--------SNFTSWLGNNSKTGKLNRFIREIHSH--MRLRSSGDANEIRQQ 868
Query: 763 YFSLLLKQLTEPLRV 777
Y +L +++ L +
Sbjct: 869 YLPVLWERMIRRLDI 883
>gi|367035834|ref|XP_003667199.1| hypothetical protein MYCTH_2312776 [Myceliophthora thermophila ATCC
42464]
gi|347014472|gb|AEO61954.1| hypothetical protein MYCTH_2312776 [Myceliophthora thermophila ATCC
42464]
Length = 945
Score = 295 bits (755), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 210/641 (32%), Positives = 323/641 (50%), Gaps = 72/641 (11%)
Query: 174 GGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGG 233
GGG G PP G E+PEGA DCL G TFV +G L +L REE + L+KR+GG
Sbjct: 300 GGGHTG--------PPPMAGAAEIPEGAEDCLLGKTFVFTGMLKTLSREEGQALVKRYGG 351
Query: 234 RVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA----------SKPM 283
+VTG+ S KT++++ +D +K K KE G + E+GLF +IR +
Sbjct: 352 KVTGAPSSKTDFVVLGDDAGPSKLRKIKEHGIKTIDEEGLFYLIRTMPAHGGSGKQAGKA 411
Query: 284 KALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSS 343
K +AE KK + + AA + K+ + + A K + +P Q + Q
Sbjct: 412 KQKQEAEEKK-IREEAARMEKEE----QERKAEAEKEAKKAAAARGAPTPAPTQPLSQ-- 464
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
WT KY P ++I GN+ V+++ WL W KR + +A I+S
Sbjct: 465 -LWTTKYAPTQLSQICGNKANVERIQNWLRKWPISRKYDFQKRGA---DGMGGYRAIIIS 520
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTTAA LV ++ G+ +E NASD+R K K+ +G + ++++N +L
Sbjct: 521 GPPGIGKTTAAHLVAKLEGYDVLESNASDTRSK---KLVEG-------GVSDVLNNTSLM 570
Query: 464 A-------NMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQ 516
+D SK K VL+MDEVDGMSAGDRGG+ L K +++P+I ICN+R
Sbjct: 571 GYFAGDGKKVDVSKK-KIVLVMDEVDGMSAGDRGGVGALAKFCKKTEVPLILICNERRLP 629
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
K+K + D++F++P +I R+M I + EGL++ + L + DIR IN L
Sbjct: 630 KMKPFDHVAFDIKFQRPTVDQIRSRIMTICHREGLKIPPQVINALIEGSGKDIRQIINML 689
Query: 577 QYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGG------KLRMDERIDLS 630
L + + +D + + K + P+ K+ G GG K ++++I+L
Sbjct: 690 STAKLDQTTMDFDQSKDMTKAWEKHVVLKPWDICQKMIG--GGLFSPASKATLNDKIELY 747
Query: 631 MSDPDLVPLLIQENYINYRPSS-------AGRDEVKRLSLIARAAESISDGDIFNVQIRR 683
+D + L+IQENY+ +P++ A +K L L+ +AAESISDGD+ + I
Sbjct: 748 FNDHEFSFLMIQENYLRSKPAALNGNNYPARLQNLKWLELVDQAAESISDGDLVDRMIHG 807
Query: 684 NQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDL 742
QQ W L + ++ S + P++ + G R F WLG NS GK R + ++
Sbjct: 808 PQQHWSLMPAHAVFSTVRPSSFIAGMF-------REQPVFTSWLGNNSKYGKLGRFVREI 860
Query: 743 HFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDEL 783
H H KS + +R Y +L QL + L + KD +
Sbjct: 861 HSH--MRLKSSGDHNEIRQQYLPVLWHQLIKRLELEGKDAV 899
>gi|115383954|ref|XP_001208524.1| hypothetical protein ATEG_01159 [Aspergillus terreus NIH2624]
gi|114196216|gb|EAU37916.1| hypothetical protein ATEG_01159 [Aspergillus terreus NIH2624]
Length = 1053
Score = 295 bits (755), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 245/792 (30%), Positives = 360/792 (45%), Gaps = 109/792 (13%)
Query: 55 FATDKQKP------------EDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKADDDDDD 102
FA D +KP D + EEL + R A GKS R K DD +
Sbjct: 159 FAADFRKPGKGDDDYVEEERSDDSDLEEL-SVRPATAASGKSGRKKATSKLDSDDDVVME 217
Query: 103 FVPPSVKKNSVGAT--PSKKLKSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGG 160
+P +NS AT P+KK KS +++D DDD + K K++GR +G
Sbjct: 218 DIPKPSSRNSKSATSQPAKKRKS--------EALDKDDDASKSPAK-----KAAGRSKGT 264
Query: 161 RGASG----------------------------APAVGRGRGGGRGGFMNFGERKDPPHK 192
A AP G G+ F R P
Sbjct: 265 PSAPSTKKQKATPKDQPESKEIQDIFDSIPTIRAPTPPPKDGQGKFNFAAQAARSTEPTG 324
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
E+P GA +CL GL+FV +G LD+L R+E L+K++GGRV G+ S KT+Y++ D
Sbjct: 325 ERAELPIGADNCLAGLSFVFTGVLDTLGRDEGVSLVKQYGGRVVGTPSSKTSYVVLGHDA 384
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEA 312
+K K+ + E GLF++IR + + K A K E
Sbjct: 385 GPSKLRTIKDNNLKTINEQGLFELIR---------RLPANGGDGKAAGKYEAKKKAEEEK 435
Query: 313 KSTSAPKAPIERMKTVASPA--KRKGQNI--QQSSLTWTEKYRPKTPNEIVGNQQLVKQL 368
A + E + + RKG+ Q WT KY P + N I GN+ +V++L
Sbjct: 436 VKAMAAEMDKEEKRQARTDGLDSRKGEKASSQTDDRLWTTKYAPTSMNMICGNKGIVEKL 495
Query: 369 HTWL------AHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422
+WL AHWN F G G ++ +L G PG+GKTTAA LV + G
Sbjct: 496 QSWLRNWHKSAHWN--FKKAGPDGMG-------LYRSVMLHGPPGIGKTTAAHLVANLEG 546
Query: 423 FQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRSKHPKTVLIMDEV 481
+ +E NASD+R K + G+ G + S++ S E + VLIMDEV
Sbjct: 547 YDVVETNASDTRSKK--LVETGLLGVLDTTSLQGYFSGEGKKVQGTKKN---LVLIMDEV 601
Query: 482 DGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
DGMSAGDRGG+ + A K + IP+I ICN+R K+K DL FR+P ++I R
Sbjct: 602 DGMSAGDRGGVGAMAAVAKKTHIPLIMICNERKLPKMKPFDGVVYDLPFRRPTVEQIRAR 661
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD 601
L I EG+++ L+ L + + DIR IN L + L + Y ++ + K+
Sbjct: 662 LSTICFREGMKIPPPVLDSLIEGTHADIRQVINMLSTVKLDQKTLDYQQGKEMSKAWEKN 721
Query: 602 EDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAG--- 654
+ PF K+ K ++++I+L +D + L++QENY+ RP+ AG
Sbjct: 722 VILKPFDIAGKILNAQMFSPSSKATLNDKIELYFNDHEFSHLMVQENYLRTRPTLAGSYQ 781
Query: 655 --RDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRET 711
++K L L AA SISDGD+ + I QQW L + ++ S + PA+ ++G
Sbjct: 782 GKEQKLKLLELADNAASSISDGDLVDRMIHGTQQQWSLMPTHAIFSFVRPASFVYGN--- 838
Query: 712 LEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQL 771
ER F WLG+NS GK R ++++ H +S RD +R YF L+ +L
Sbjct: 839 --MTER--PSFSAWLGQNSKQGKLGRYIKEIQGH--MRLRSSGNRDEIRQQYFPLIWTKL 892
Query: 772 TEPLRVLPKDEL 783
L+ KD +
Sbjct: 893 VRRLQEEGKDSV 904
>gi|331246527|ref|XP_003335896.1| replication factor C subunit 1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1470
Score = 295 bits (755), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 209/609 (34%), Positives = 310/609 (50%), Gaps = 58/609 (9%)
Query: 185 ERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTN 244
ER P G K +PEGA +CL GLTFV +G L+SL RE+A+ L KR+GGRVT S S KT+
Sbjct: 43 ERAGPSAPGSKPIPEGAENCLAGLTFVFTGELESLSREDAQTLAKRYGGRVTTSPSSKTS 102
Query: 245 YLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPK 304
+++ D K K+ +TED ++I SKP + KK ++V K
Sbjct: 103 FVVLGSDAGPKKLEMIKKHKIKTITEDEFLNLI-GSKPSGEVDAKTLKKQEDEV-----K 156
Query: 305 KSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL 364
K Q AK PK + KT A GQ WT KY PK ++ GN+
Sbjct: 157 KVEQ--AAKELGPPKGSVSE-KTSA------GQ-------LWTVKYAPKNLGDLCGNKTQ 200
Query: 365 VKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424
+ ++ WL W+ KF + + GK + + +LSG PG+GKT+AA LV + G++
Sbjct: 201 IDKIQAWLRDWS-KFRRSNFTKPGK--DGLGMYRCVVLSGPPGVGKTSAAHLVAKAEGYE 257
Query: 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRS--KHPKTVLIMDEVD 482
IE+NASD+R K + K+++ N +++ ++ S + K VLIMDEVD
Sbjct: 258 VIELNASDTRSKKLLE----------TGFKDIIGNSSIAGFLETSTKRSEKLVLIMDEVD 307
Query: 483 GMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRL 542
GMSAGDRGG+ L A IK S+IPII I ND K+K L L FR+P I R+
Sbjct: 308 GMSAGDRGGVGALNALIKKSQIPIIAIANDMSIPKMKPLKATALSLVFRRPNVNMIRSRM 367
Query: 543 MQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS------VIKYDDIRQRLL 596
M IA EG+++ A+++L DIR IN L + S + +D RQ
Sbjct: 368 MSIAFKEGMKIPPNAIDQLVAGSQSDIRQIINMLSTWKIGNSEQGPSKTMDFDQARQLTS 427
Query: 597 SSAKDEDISPFTAVDKLFGFNGG----KLRMDERIDLSMSDPDLVPLLIQENYINY---- 648
+ KD +SP+ + K+F + ++ +L D D++PL +Q+ Y+ +
Sbjct: 428 ENEKDAIMSPWALMSKIFAPQTWSQMTSMTFIDKCNLYFHDHDMLPLFVQDGYVKHDYGQ 487
Query: 649 -RPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMH 706
R + K++ L++ AA+SI+DGD+ + I QQ W L + S + PA H
Sbjct: 488 ARTYAGQEKAAKKMELLSLAADSIADGDLVDRMIHGPQQHWSLMPLHGVFSVVRPAYYCH 547
Query: 707 GQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSL 766
G + G+ F W GKNST GK R + ++H + + S R+TL ++Y +
Sbjct: 548 GPSTS---GDFGGFSFPSWFGKNSTQGKLSRTMGEIH-GRMRMKISGDKRETL-MNYLPV 602
Query: 767 LLKQLTEPL 775
L +L +PL
Sbjct: 603 LYPRLMDPL 611
>gi|350289217|gb|EGZ70442.1| DNA replication factor C, large subunit [Neurospora tetrasperma
FGSC 2509]
Length = 1090
Score = 295 bits (754), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 203/620 (32%), Positives = 308/620 (49%), Gaps = 54/620 (8%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
PP G ++PEG DCL G TFV +G L ++ REEA+ L+KR+GG+VTG+ S KT++++
Sbjct: 327 PPMAGTADIPEGEIDCLAGKTFVFTGLLKTIAREEAQALVKRYGGKVTGAPSSKTDFVVL 386
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIR---ASKPMKALAQAESKKSVEKVAASLPKK 305
+D +K K KE G + E+GLF +IR A A+ +K E+ +
Sbjct: 387 GDDAGPSKLRKIKEHGIKTIDEEGLFYLIRTMPAGGGTGKGAEKAKQKREEEERKVREEA 446
Query: 306 SPQNIEAKS----TSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGN 361
+ E K+ + V+ PA SS WT KY P N+I GN
Sbjct: 447 EKLDREEKALRLAAEKEAKKAAAARGVSGPAP---ALPTPSSQLWTTKYAPTAMNQICGN 503
Query: 362 QQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421
+ V+++ WL +W + KR + + +A I+SG PG+GKTTAA L +M
Sbjct: 504 KANVEKIQNWLKNWPKSRKYNFQKRGA---DGSGGYRAIIISGPPGIGKTTAAHLAAKME 560
Query: 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL------SANMDRSKHPKTV 475
G+ IE NASD+R K + N + E+++N +L ++ K V
Sbjct: 561 GYDVIESNASDTRSKKLIE----------NGVSEVMTNTSLLGFFGGDGKHADARKKKIV 610
Query: 476 LIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRK 535
L+MDEVDGMSAGDRGG+ + K +++P+I ICN+R K+K + D++F++P
Sbjct: 611 LVMDEVDGMSAGDRGGVGTMAKFCKKTEVPLILICNERRLPKMKPFDHVAFDIKFQRPTV 670
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRL 595
+I R+M I + EGL++ + L + DIR IN + L + + +D +Q
Sbjct: 671 DQIRSRIMTICHREGLKIPPPVVNALIEGSGRDIRQIINMIFTAKLDQTTMDFDQSKQMS 730
Query: 596 LSSAKDEDISPFTAVDKLFGFNGGKL------RMDERIDLSMSDPDLVPLLIQENYINYR 649
+ K + P+ KL G GG ++++IDL +D + L+IQENY+ R
Sbjct: 731 KAWEKHVILKPWDICQKLIG--GGMFAPSSTATLNDKIDLYFNDHEFSYLMIQENYLRSR 788
Query: 650 P-------SSAGRDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIP 701
P + +K L L+ AAESISDGD+ + I QQW L + ++ S + P
Sbjct: 789 PMVLNQKGYTPREQNLKYLELVDEAAESISDGDLVDRMIHGPQQQWSLMPTHAVFSTVRP 848
Query: 702 AALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRL 761
++L+ GQ Q F WLG NS GK R ++H H KS +R
Sbjct: 849 SSLIAGQFGGQAQ-------FTSWLGNNSKYGKLNRFNREIHAH--MRLKSSGDAQEIRQ 899
Query: 762 DYFSLLLKQLTEPLRVLPKD 781
Y +L +L + L V KD
Sbjct: 900 QYMPVLWDKLVKRLEVEGKD 919
>gi|402076630|gb|EJT72053.1| replication factor C subunit 1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1081
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 208/639 (32%), Positives = 312/639 (48%), Gaps = 81/639 (12%)
Query: 174 GGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGG 233
GGG G PP G ++PEG DCL GLTFV +G L +L REE + L+KR+GG
Sbjct: 311 GGGNSG--------PPPDAGAIDLPEGEEDCLSGLTFVFTGLLKTLSREEGQALVKRYGG 362
Query: 234 RVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKK 293
+VTG+ S KT++++ +D +K K K G + E GLF +I+ AQ S K
Sbjct: 363 KVTGAPSGKTSFVVLGDDAGPSKLAKIKHHGIKTIDEVGLFHLIKTLP-----AQGGSGK 417
Query: 294 SVEKVAASLPKKSPQ----------------NIEAKSTSAPKAPIERMKTVASPAKRKGQ 337
EK ++ Q K+ A +A R V P Q
Sbjct: 418 GAEKARQKREEQEEQVKKAAAEMEAEEKARKAEAEKAAKARQAAGSRGSVVPPPPAPNSQ 477
Query: 338 NIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE 397
WT KY P + I GN+ V ++ WL +W + KR + E
Sbjct: 478 -------LWTSKYAPTQISHICGNKAQVDRIKAWLENWPKSRKYDFKKRGA---DGMGGE 527
Query: 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
+A I+SG PG+GKTTAA + ++ G+ IE NASD+R K + N + +++
Sbjct: 528 RAIIISGPPGIGKTTAAHMAARLAGYDVIESNASDTRSKKLVE----------NGVSDVI 577
Query: 458 SNEAL-------SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICIC 510
+N +L +D +K VLIMDEVDGMSAGDRGG+ L K S++P+I IC
Sbjct: 578 NNTSLLGFFSGEGKKVDETKK-NIVLIMDEVDGMSAGDRGGVGALAKFCKKSEVPLILIC 636
Query: 511 NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGL-EVNEIALEELADRVNGDI 569
N+R K+K + D+RF +P ++I R+M I + EGL ++ ++ L + N DI
Sbjct: 637 NERRLPKMKPFDHAAFDIRFNRPTVEQIRSRIMTICHREGLGKMPAQVIDALIEGCNKDI 696
Query: 570 RMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG---FN-GGKLRMDE 625
R IN L + L + + YD + + K + P+ K+ G F+ K +++
Sbjct: 697 RQIINMLHSIKLDGAALNYDQTKTMTKAWEKHVILKPWDICQKMLGGGLFSPASKSTLND 756
Query: 626 RIDLSMSDPDLVPLLIQENYINYRP--------SSAGRDEVKRLSLIARAAESISDGDIF 677
+I+L +D + L+IQENY+ RP S ++ +K L L+ +A+ESISDGD+
Sbjct: 757 KIELYFNDHEFSYLMIQENYLGTRPHLLNGKNFGSKRQENLKYLELVEQASESISDGDLV 816
Query: 678 NVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNL 736
+ I QQW L + ++ S + PA+ + GQ + F WLG NS GK
Sbjct: 817 DRMIHGPQQQWSLMPTHAVFSSVRPASYVSGQLMG--------SSFTAWLGMNSKTGKLG 868
Query: 737 RLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
R + ++H H KS + +R Y +L QL + L
Sbjct: 869 RFVREIHSH--MRLKSSGDHNEIRQQYLPVLWDQLIKRL 905
>gi|50547051|ref|XP_500995.1| YALI0B16918p [Yarrowia lipolytica]
gi|49646861|emb|CAG83248.1| YALI0B16918p [Yarrowia lipolytica CLIB122]
Length = 952
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 208/609 (34%), Positives = 310/609 (50%), Gaps = 66/609 (10%)
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
G E+PE A +CL GLTFV +GT+ +L REE + +K++GG+VT S+S KTN ++ ED
Sbjct: 243 GAVELPEAAENCLVGLTFVFTGTMPNLSREEGQAAVKKYGGKVTSSISGKTNCVVLGEDA 302
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQ-----------------AESKKSV 295
K + K+L T L E G +++R AES K
Sbjct: 303 GPKKIEQIKKLRTKALDEAGFLELLRLMPADGGGGAAAEKALAKQAEEADKIAAESAKMA 362
Query: 296 EKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTP 355
++AA K+ + +A ++ AP+A + WT KY P
Sbjct: 363 AEMAAREKKEKAASKKADASGAPRA------------------VSMDDQLWTVKYAPNNL 404
Query: 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAK 415
N + GN+ V +L WL +W++ G K+ GK + +A +LSG PG+GKTTAA
Sbjct: 405 NHVCGNKGAVTKLQNWLNNWHDN-AKHGFKQPGK--DGFGIYRAVLLSGPPGIGKTTAAH 461
Query: 416 LVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTV 475
LV + G+ IE NASD R SK + + +S S ++ SK K
Sbjct: 462 LVANLAGYDVIENNASDVR-------SKKLLAQDVSSALTNTSIMGFMSSAKSSKEKKIC 514
Query: 476 LIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRK 535
+IMDEVDGMSAGDRGG+ + A + +++PII ICND+ K++ D+ FR+
Sbjct: 515 MIMDEVDGMSAGDRGGVGQMAALCRTTEVPIILICNDKGLPKMRPFDRVTLDIPFRRMDP 574
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV--IKYDDIRQ 593
+ I R+M I + E ++++ LE++ N DIR IN L + + + + + ++
Sbjct: 575 KAILARMMTICHQEKIKISAPVLEQVIAGCNSDIRQIINLLSTYARNQNEGGLDIESGKK 634
Query: 594 RLLSSAKDEDISPFTAVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLLIQENYIN 647
S K+ +SPF KL +GG K ++++I+L +D D VPL+IQENY+N
Sbjct: 635 MTQSWEKNVVLSPFDITGKL--LSGGLWAPSSKATLNDKIELYFNDHDFVPLMIQENYLN 692
Query: 648 YRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMH 706
+PS G D +RL AAESISDGD+ + I +QQ W L S + PA+ +
Sbjct: 693 VQPSGGG-DNKERLRKTLAAAESISDGDLVDKMIHGSQQHWSLMPLHGFLSAVRPASFVA 751
Query: 707 GQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSL 766
GQ +G NF WLG+NS GK+LR L++L H A K+ LR Y L
Sbjct: 752 GQ----ARGRFNFT---SWLGQNSKGGKHLRALQELQSH--AGYKTSGNSRELRQQYLPL 802
Query: 767 LLKQLTEPL 775
+ ++L +PL
Sbjct: 803 MTRKLLDPL 811
>gi|395327638|gb|EJF60036.1| DNA replication factor C, large subunit [Dichomitus squalens
LYAD-421 SS1]
Length = 718
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 203/613 (33%), Positives = 310/613 (50%), Gaps = 63/613 (10%)
Query: 186 RKDPPHKGEKEVPEGA-PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTN 244
R P G K++P P+CL GL+FV +G L SL R+EA +L KR+GGRVTG S KT+
Sbjct: 5 RAGPSAPGSKQIPMAQDPNCLAGLSFVFTGELSSLSRDEAVELAKRYGGRVTGQPSSKTS 64
Query: 245 YLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPK 304
Y++ D +K + L EDG +I K +A+ Q
Sbjct: 65 YVVLGADAGPSKLKAIAKNNLKTLDEDGFLALIATRKEEEAIRQ---------------- 108
Query: 305 KSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL 364
S + +EA+ +A KA A A + ++ L WT +Y P++ EI GN+
Sbjct: 109 -SAREMEAREKAASKAAAATAPGGAGGAGAAARTASEN-LLWTARYAPQSLKEICGNKGQ 166
Query: 365 VKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424
V++L TWL W + + K+ GK + + +A +++G PG+GKTT+A L ++ GF
Sbjct: 167 VEKLQTWLGSWAAN-VRSEFKKPGK--DGMNVFRAVMITGPPGIGKTTSAHLCAKLAGFT 223
Query: 425 AIEVNASDSRGKADAKISKGI----------GGSNANSIKELVSNEALSANMDRSKHPKT 474
+E+NASD+R K + S I GG N+ +++ K+
Sbjct: 224 PVELNASDARSKKLVENSTNIMNTSLDGWMSGGQKTNAAGVTITD-------------KS 270
Query: 475 VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPR 534
LIMDEVDGMSAGDRGG+ L+A IK +KIPIICI NDR +QKLK LV+ +L FR+P
Sbjct: 271 CLIMDEVDGMSAGDRGGVGALVALIKRTKIPIICIANDRGAQKLKPLVSATYNLTFRRPE 330
Query: 535 KQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQR 594
+ R+M I EG+++ +++L DIR +N L L+ + + +D+ +
Sbjct: 331 VNMVRSRIMSILFKEGMKIPANVVDQLVQGAQADIRQVLNMLSTWRLANNTMDFDEGKNL 390
Query: 595 LLSSAKDEDISPFTAVDKLFG----FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRP 650
+ + K ++PF ++K+ G + + +++++ DP VPL +QENY+ +P
Sbjct: 391 VKMNEKYTVMTPFGVINKILGPGMFLPTTRETLGDKMEMYFHDPSFVPLFMQENYLKTQP 450
Query: 651 S-----SAGRDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAAL 704
S +K L L+ +AA SISDGDI + I NQ W L ++ S + PA+
Sbjct: 451 SRIRNLDGPEKTLKHLELMDKAATSISDGDIVDSLIHGPNQYWSLMPLHAVCSTVRPASF 510
Query: 705 MHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRD--TLRLD 762
++G G N F WLG+NS K R L D+ A + K+ D +R
Sbjct: 511 LYGMGAGY--GGPNAMSFPQWLGQNSKQSKLSRQLTDVQ----ARMRLKVSGDKSEIRQS 564
Query: 763 YFSLLLKQLTEPL 775
Y L + +PL
Sbjct: 565 YIPSLFPHIVQPL 577
>gi|367009250|ref|XP_003679126.1| hypothetical protein TDEL_0A05830 [Torulaspora delbrueckii]
gi|359746783|emb|CCE89915.1| hypothetical protein TDEL_0A05830 [Torulaspora delbrueckii]
Length = 856
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 235/763 (30%), Positives = 372/763 (48%), Gaps = 87/763 (11%)
Query: 37 EPGCGGHESMGRRKTSKYFATDKQKPEDGGEKEELPAKRK----AEKDDGKSVRSS---- 88
+PG +S+ +++ K D +D ++ E+PAK++ EK + K R +
Sbjct: 13 KPGQKPAKSVTTKRSVKPEVIDLGDDDDDDDEHEIPAKKRRQPSVEKVETKRSRPATSAK 72
Query: 89 -PLKKFHKADDDDDDFVPPSVKKNSVGATPSKKLKSGSGRAVAQK--SVDIDDDEEEDVK 145
P KK P K + + +S + V QK SVD+ VK
Sbjct: 73 PPAKK-----------APVHKKASPTTGNVTSAAESVTANDVLQKIPSVDLSGVH---VK 118
Query: 146 KTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCL 205
+ S R R +G+SG D P + PEG P+CL
Sbjct: 119 ENVS---FDFRNRPAQGSSG----------------------DLPDSSALDFPEGKPNCL 153
Query: 206 GGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGT 265
GLT V +G L ++ER +AE L KR+G RVT S+S +T+ ++ ++ K K+LG
Sbjct: 154 LGLTMVFTGVLPNIERGQAEALAKRYGARVTKSISSRTSVVVLGDEAGPKKLENIKKLGI 213
Query: 266 PFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERM 325
+ EDG F + A P + A ++K+ +K+ + + E + +A
Sbjct: 214 KAIDEDG-FKQLIAGMPAEGGEGAAAEKARQKIEEQEKQAIQEAEEMANQERERARRVSA 272
Query: 326 KTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTK 385
+ ++ + ++ WT KY P +I GN+ V +L WL +W E ++
Sbjct: 273 ARASGEQVKEADKVDEAYKLWTVKYAPTNLQQICGNKSSVSKLKNWLTNWEE------SR 326
Query: 386 RNGKK---QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKIS 442
RNG K ++ ++A+L G PG+GKTTAA LV + LG+ +E NASD R K + ++
Sbjct: 327 RNGFKSAGRHGTGVFRSAMLYGPPGIGKTTAAHLVAKELGYDILEQNASDVRSK--SLLN 384
Query: 443 KGIGGSNANSIKELVSNEALSANMDR--SKHPKTVLIMDEVDGMSAGDRGGIADLIASIK 500
GI NS+ + D S K V+IMDEVDGMS GDRGG+ L + +
Sbjct: 385 NGI----KNSLDNMSVFGYFKGRTDPSGSNGKKFVIIMDEVDGMSGGDRGGVGQLASFCR 440
Query: 501 ISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEE 560
+ P+I ICN+R K++ C D++FR+P I RLM IA E +++ +++
Sbjct: 441 KTSTPMILICNERNLPKMRPFDRVCLDVQFRRPDANSIKARLMTIAVREKFKLDPNVIDK 500
Query: 561 LADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKL-----FG 615
L GDIR +N L ++ + I +++I + + K+ + PF KL +
Sbjct: 501 LVQATRGDIRQIVNLLSTITKTSKQINHENITEISAAWEKNIALKPFDIAHKLLDGRIYT 560
Query: 616 FNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDG 674
NG + ++E+I L D D PL+IQENY++ RPS+ + + LS +A AAESIS
Sbjct: 561 ENGAQHFNLNEKIALYFDDFDFAPLMIQENYLSTRPSNLKKGQ-SHLSAVAEAAESISQS 619
Query: 675 DIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMG 733
++ +IR ++Q W L ++ S + P++L+ GQ G NF WLG+NS G
Sbjct: 620 NLVEKRIRSSEQLWSLLPLHAILSSVYPSSLVAGQM----AGRINFT---AWLGQNSKAG 672
Query: 734 KNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
K RLL++LH+H L++ K+ +LRLDY L +L P+
Sbjct: 673 KYSRLLQELHYHTKLSTSADKI---SLRLDYLPALKNRLLNPI 712
>gi|169865629|ref|XP_001839413.1| purine nucleotide binding protein [Coprinopsis cinerea
okayama7#130]
gi|116499532|gb|EAU82427.1| purine nucleotide binding protein [Coprinopsis cinerea
okayama7#130]
Length = 920
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 196/594 (32%), Positives = 300/594 (50%), Gaps = 44/594 (7%)
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
G K +P+GAPD L GL+FV +G L + R+EA DL KR GGRV G S KT+Y++ ED
Sbjct: 223 GSKPIPDGAPDALAGLSFVFTGELTAFSRDEAVDLAKRFGGRVVGQPSSKTDYVVLGEDA 282
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEA 312
K K+ L EDG ++I K + E K + + +K+ + +E
Sbjct: 283 GPKKLEAIKKHKLNTLDEDGFLNLIATRKGLGNGQIDEKTKKKLEKEQADIRKAAKEME- 341
Query: 313 KSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWL 372
R+ + + S+ WT +Y P+ EI GN+ V++L WL
Sbjct: 342 --------------------NREKKGVDPSTQLWTTRYAPQNLKEICGNKGQVEKLQQWL 381
Query: 373 AHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432
W + + G K+ GK N + +A +++GSPG+GKTT+A L ++ G+ IE+NASD
Sbjct: 382 NDW-QSSMKAGFKKPGK--NGMNIYRAVLITGSPGIGKTTSAHLCAKLAGYTPIELNASD 438
Query: 433 SRGKADAKISKGIGGSNANSIKELVSNEALSANM-DRSKHPKTVLIMDEVDGMSAGDRGG 491
+R K + I ++ + + S ++ ++ DR T LIMDEVDGMSAGDRGG
Sbjct: 439 ARSKKLVENGMNINNTSLDGFIKGASKNSVGVDITDR-----TCLIMDEVDGMSAGDRGG 493
Query: 492 IADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGL 551
+ L A IK +K+PIICI NDR +QKLK L L F KP+ I R++ IA E L
Sbjct: 494 VGALNALIKKTKVPIICIANDRNAQKLKPLQGTTFSLPFHKPQVNMIRSRILTIAFKEKL 553
Query: 552 EVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVD 611
++ +++L DIR +N L LS + + +D+ ++ + + K + +SPF
Sbjct: 554 KIPPNVIDQLIAGAQSDIRQVLNMLSTWKLSSNTMDFDEGKELVKQNEKYQILSPFDITS 613
Query: 612 KLFG---FNG-GKLRMDERIDLSMSDPDLVPLLIQENYINYRPS-----SAGRDEVKRLS 662
K+ G F+ + + ++++ D VPL IQENY+ +PS +K L
Sbjct: 614 KVLGPYLFSATSRETLGDKMEYYFQDHSFVPLFIQENYLKTQPSRLKNLDGPERHLKELE 673
Query: 663 LIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNR 721
L+ +AA SISD D+ + I Q W L ++ S + PA+ ++G G N
Sbjct: 674 LMDKAASSISDADLVDALIHGPEQHWGLMPLHAVCSTVRPASFLYGA--GAHYGGNNPIS 731
Query: 722 FGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F WLG+NS K +R L D+ K ++ +R Y L + +PL
Sbjct: 732 FPQWLGQNSKRMKLMRQLGDVQIR--MRLKVSGDKNEIRQSYIPALYPHIVKPL 783
>gi|336468521|gb|EGO56684.1| hypothetical protein NEUTE1DRAFT_65451 [Neurospora tetrasperma FGSC
2508]
Length = 928
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 203/620 (32%), Positives = 308/620 (49%), Gaps = 54/620 (8%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
PP G ++PEG DCL G TFV +G L ++ REEA+ L+KR+GG+VTG+ S KT++++
Sbjct: 165 PPMAGTADIPEGEIDCLAGKTFVFTGLLKTIAREEAQALVKRYGGKVTGAPSSKTDFVVL 224
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIR---ASKPMKALAQAESKKSVEKVAASLPKK 305
+D +K K KE G + E+GLF +IR A A+ +K E+ +
Sbjct: 225 GDDAGPSKLRKIKEHGIKTIDEEGLFYLIRTMPAGGGTGKGAEKAKQKREEEERKVREEA 284
Query: 306 SPQNIEAKS----TSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGN 361
+ E K+ + V+ PA SS WT KY P N+I GN
Sbjct: 285 EKLDREEKALRLAAEKEAKKAAAARGVSGPAPALPT---PSSQLWTTKYAPTAMNQICGN 341
Query: 362 QQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421
+ V+++ WL +W + KR + + +A I+SG PG+GKTTAA L +M
Sbjct: 342 KANVEKIQNWLKNWPKSRKYNFQKRGA---DGSGGYRAIIISGPPGIGKTTAAHLAAKME 398
Query: 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL------SANMDRSKHPKTV 475
G+ IE NASD+R K + N + E+++N +L ++ K V
Sbjct: 399 GYDVIESNASDTRSKKLIE----------NGVSEVMTNTSLLGFFGGDGKHADARKKKIV 448
Query: 476 LIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRK 535
L+MDEVDGMSAGDRGG+ + K +++P+I ICN+R K+K + D++F++P
Sbjct: 449 LVMDEVDGMSAGDRGGVGTMAKFCKKTEVPLILICNERRLPKMKPFDHVAFDIKFQRPTV 508
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRL 595
+I R+M I + EGL++ + L + DIR IN + L + + +D +Q
Sbjct: 509 DQIRSRIMTICHREGLKIPPPVVNALIEGSGRDIRQIINMIFTAKLDQTTMDFDQSKQMS 568
Query: 596 LSSAKDEDISPFTAVDKLFGFNGGKL------RMDERIDLSMSDPDLVPLLIQENYINYR 649
+ K + P+ KL G GG ++++IDL +D + L+IQENY+ R
Sbjct: 569 KAWEKHVILKPWDICQKLIG--GGMFAPSSTATLNDKIDLYFNDHEFSYLMIQENYLRSR 626
Query: 650 P-------SSAGRDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIP 701
P + +K L L+ AAESISDGD+ + I QQW L + ++ S + P
Sbjct: 627 PMVLNQKGYTPREQNLKYLELVDEAAESISDGDLVDRMIHGPQQQWSLMPTHAVFSTVRP 686
Query: 702 AALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRL 761
++L+ GQ Q F WLG NS GK R ++H H KS +R
Sbjct: 687 SSLIAGQFGGQAQ-------FTSWLGNNSKYGKLNRFNREIHAH--MRLKSSGDAQEIRQ 737
Query: 762 DYFSLLLKQLTEPLRVLPKD 781
Y +L +L + L V KD
Sbjct: 738 QYMPVLWDKLVKRLEVEGKD 757
>gi|154301785|ref|XP_001551304.1| hypothetical protein BC1G_10044 [Botryotinia fuckeliana B05.10]
Length = 1054
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 201/627 (32%), Positives = 318/627 (50%), Gaps = 58/627 (9%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
PP G E+PEG +CL GLTFV +G LD++ R+E +L+KR+GG++TG+ S KTN+++
Sbjct: 296 PPAAGCAEIPEGPENCLVGLTFVFTGMLDTISRDEGIELVKRYGGKITGAPSSKTNFVVL 355
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQ 308
+D +K K L + E G+F ++R + P ++K+ EK AA K
Sbjct: 356 GKDAGPSKLRKIATLKIKTIDEHGIFHLLR-TLPANGGDGKAAEKNNEKKAAEEKKIRED 414
Query: 309 NIEA------KSTSAPKAPIERMKTVAS------PAKRKGQNIQQSSLTWTEKYRPKTPN 356
E K+ KA E K + PA + + SS WT KY P N
Sbjct: 415 AAEMDREERRKAAELEKAEKEAQKLAEAKGKSSIPAAPRKAIVPTSSQLWTTKYAPTQMN 474
Query: 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQ--NDASAEKAAILSGSPGMGKTTAA 414
+I GN+ V+++ WL W +T K N +K+ + +A I+ G PG+GKTTAA
Sbjct: 475 QICGNKGQVEKIQAWLKGW-----ETAHKYNFQKRGADGLGGYRAIIIHGPPGIGKTTAA 529
Query: 415 KLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL-------SANMD 467
L ++ G+ +E NASD R K + + E+++N ++ ++D
Sbjct: 530 HLAAKLAGYDILERNASDVRSKKLVE----------TGLSEVLNNTSVLGYFAGDGKDVD 579
Query: 468 RSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSD 527
++K K VLIMDEVDGMS+GDRGG+ L K + IP+I ICNDR K+K D
Sbjct: 580 KTKK-KLVLIMDEVDGMSSGDRGGVGALAKICKTTDIPMILICNDRKLPKMKPFDFVTFD 638
Query: 528 LRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIK 587
+ FR+P + R+ I + EG+++ ++ L + N DIR IN + + L + +
Sbjct: 639 MPFRRPTVDMVRSRIATICHREGMKLPVQVIDALIEGSNKDIRQIINMISTVKLDQTAMN 698
Query: 588 YDDIRQRLLSSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQE 643
+D ++ + K + P+ +L G + K ++++I+L +D + PL+IQE
Sbjct: 699 FDQGKEMSKAWEKHVVLKPWDITSQLLGGHMFSPASKSTLNDKIELYFNDHEFTPLMIQE 758
Query: 644 NYINYRPSSAGRDE------VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLA 696
NY+N +P A + +K L L+ +AAESISDGD+ + I QQW L + ++
Sbjct: 759 NYLNTKPQLASSSDTPKEHRLKVLQLVDQAAESISDGDLVDRMIHGSQQQWSLMPTHAVF 818
Query: 697 SCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGR 756
S + P++ + G G NF WLG NS GK R ++++ H +S R
Sbjct: 819 STVRPSSFVSGSM----IGRTNFT---SWLGNNSKHGKLSRYVKEIQSH--MRLRSSGDR 869
Query: 757 DTLRLDYFSLLLKQLTEPLRVLPKDEL 783
+R Y +L +L L V +D +
Sbjct: 870 HEIRQQYLPVLWDKLIRRLDVEGRDSV 896
>gi|296422835|ref|XP_002840964.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637191|emb|CAZ85155.1| unnamed protein product [Tuber melanosporum]
Length = 1025
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 203/617 (32%), Positives = 315/617 (51%), Gaps = 72/617 (11%)
Query: 180 FMNFGERKD--PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTG 237
+ +F +R+ P G KE+P G +CL GLTFV +G L+SL RE+ + L+K++GG++T
Sbjct: 289 YRDFKQRQGAVPIAPGSKEIPVGQENCLTGLTFVFTGILESLAREDGQQLVKKYGGKITS 348
Query: 238 SVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEK 297
+ S KT+Y++ D K +L + EDGLF +I
Sbjct: 349 APSTKTSYVVLGSDAGPKKLATIHKLKIKTINEDGLFKLI-------------------- 388
Query: 298 VAASLPKKSPQNIEAKSTSAPKAPIER-----MKTVASPAKRKGQNIQQSSLT--WTEKY 350
+SLP + A++ A KA E+ K + K +G+ + T WT KY
Sbjct: 389 --SSLPANGGDGLAARANEAKKAAEEQKVRELAKEMDDETKSRGKEAIEKEATELWTVKY 446
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
P +I GN+ V++L WL +W K L TG + G + +A ++ G PG+GK
Sbjct: 447 APSQLTQICGNKGQVEKLGRWLRNW-PKNLKTGFRMRG--ADGMGGARAVMIHGPPGIGK 503
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL----SANM 466
TTAA LV ++ G+ +E NASD+R K + ++ ++ N +L + +
Sbjct: 504 TTAAHLVAKLEGYDIVESNASDTRSKKLME----------EKLRGVLDNRSLLGYFAGDK 553
Query: 467 DRSKHPK--TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
++ KH K VLIMDEVDGMSAGDRGG+ L A K S IPIICICN+R K++
Sbjct: 554 EKVKHSKQKMVLIMDEVDGMSAGDRGGVGQLAAVCKKSNIPIICICNERKLPKMRPFDMV 613
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
DL FR+P + R+M IA EG+++ +++L + + DIR IN L S + S
Sbjct: 614 TYDLPFRRPDAAAVRSRIMSIAYREGIKLPPNVIDQLVEGTHADIRQIINMLSTYSTTQS 673
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLL 640
+ +D + + K + P+ KL G K ++++I+L +D + ++
Sbjct: 674 SMTFDQGKDLAKAWEKHVVLKPWDIAQKLLGNEMFAPTSKKTLNDKIELYFNDHEFSYMM 733
Query: 641 IQENYINYRPSSA----GRD-EVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSS 694
+QENY+ P+ A G++ +K L L+ A+ESISDGD+ + I QQW L +
Sbjct: 734 VQENYLKTNPARANNYHGKERNLKMLELVENASESISDGDLVDALIHGPQQQWSLMPAHG 793
Query: 695 LASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKL 754
+ S + PA+ M+G G ++F F WLG NS GK R ++++ H+ R S
Sbjct: 794 MFSTVKPASYMYGGF-----GGQHFC-FTSWLGNNSKQGKLSRFVKEIQ-SHIRLRASAS 846
Query: 755 GRDTLRLDYFSLLLKQL 771
R L S+L K+L
Sbjct: 847 PRTNL-----SMLAKRL 858
>gi|347828480|emb|CCD44177.1| hypothetical protein [Botryotinia fuckeliana]
Length = 1069
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 201/627 (32%), Positives = 318/627 (50%), Gaps = 58/627 (9%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
PP G E+PEG +CL GLTFV +G LD++ R+E +L+KR+GG++TG+ S KTN+++
Sbjct: 311 PPAAGCAEIPEGPENCLVGLTFVFTGMLDTISRDEGIELVKRYGGKITGAPSSKTNFVVL 370
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQ 308
+D +K K L + E G+F ++R + P ++K+ EK AA K
Sbjct: 371 GKDAGPSKLRKIATLKIKTIDEHGIFHLLR-TLPANGGDGKAAEKNNEKKAAEEKKIRED 429
Query: 309 NIEA------KSTSAPKAPIERMKTVAS------PAKRKGQNIQQSSLTWTEKYRPKTPN 356
E K+ KA E K + PA + + SS WT KY P N
Sbjct: 430 AAEMDREERRKAAELEKAEKEAQKLAEAKGKSSIPAAPRKAIVPTSSQLWTTKYAPTQMN 489
Query: 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQ--NDASAEKAAILSGSPGMGKTTAA 414
+I GN+ V+++ WL W +T K N +K+ + +A I+ G PG+GKTTAA
Sbjct: 490 QICGNKGQVEKIQAWLKGW-----ETAHKYNFQKRGADGLGGYRAIIIHGPPGIGKTTAA 544
Query: 415 KLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL-------SANMD 467
L ++ G+ +E NASD R K + + E+++N ++ ++D
Sbjct: 545 HLAAKLAGYDILERNASDVRSKKLVE----------TGLSEVLNNTSVLGYFAGDGKDVD 594
Query: 468 RSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSD 527
++K K VLIMDEVDGMS+GDRGG+ L K + IP+I ICNDR K+K D
Sbjct: 595 KTKK-KLVLIMDEVDGMSSGDRGGVGALAKICKTTDIPMILICNDRKLPKMKPFDFVTFD 653
Query: 528 LRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIK 587
+ FR+P + R+ I + EG+++ ++ L + N DIR IN + + L + +
Sbjct: 654 MPFRRPTVDMVRSRIATICHREGMKLPVQVIDALIEGSNKDIRQIINMISTVKLDQTAMN 713
Query: 588 YDDIRQRLLSSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQE 643
+D ++ + K + P+ +L G + K ++++I+L +D + PL+IQE
Sbjct: 714 FDQGKEMSKAWEKHVVLKPWDITSQLLGGHMFSPASKSTLNDKIELYFNDHEFTPLMIQE 773
Query: 644 NYINYRPSSAGRDE------VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLA 696
NY+N +P A + +K L L+ +AAESISDGD+ + I QQW L + ++
Sbjct: 774 NYLNTKPQLASSSDTPKEHRLKVLQLVDQAAESISDGDLVDRMIHGSQQQWSLMPTHAVF 833
Query: 697 SCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGR 756
S + P++ + G G NF WLG NS GK R ++++ H +S R
Sbjct: 834 STVRPSSFVSGSM----IGRTNFT---SWLGNNSKHGKLSRYVKEIQSH--MRLRSSGDR 884
Query: 757 DTLRLDYFSLLLKQLTEPLRVLPKDEL 783
+R Y +L +L L V +D +
Sbjct: 885 HEIRQQYLPVLWDKLIRRLDVEGRDSV 911
>gi|398411793|ref|XP_003857232.1| hypothetical protein MYCGRDRAFT_32502 [Zymoseptoria tritici IPO323]
gi|339477117|gb|EGP92208.1| hypothetical protein MYCGRDRAFT_32502 [Zymoseptoria tritici IPO323]
Length = 1078
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 205/614 (33%), Positives = 320/614 (52%), Gaps = 43/614 (7%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
++P G +CL GLTFV +G L L RE+ ++L+K++GG+VT + SKKT+Y++ ED
Sbjct: 328 DLPSGQDNCLAGLTFVFTGQLSRLGREQGQNLVKQYGGKVTTAPSKKTSYVVLGEDAGPK 387
Query: 256 KSTKAKELGTPFLTEDGLFDMIR-----------ASKPMKALAQAESKKSVEKVAASLPK 304
K K + EDGLF +I+ A K + +A+ E K V + AA + +
Sbjct: 388 KLETIKNYNLKVINEDGLFALIQKLPANGGDSAAAEKQAEKIAKEEEK--VREAAAEMDR 445
Query: 305 KSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQS---SLTWTEKYRPKTPNEIVGN 361
+ A++ A KA S ++ + S WT +Y P++ N+I GN
Sbjct: 446 QEKAQRAAQAAQAAKAAKASSSVTQSAPQKAKAPVNPDAPDSRLWTVRYAPQSLNQICGN 505
Query: 362 QQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421
+ V+++ TWL + K TG K GK + + +A ++ G PG+GKTTAA LV ++
Sbjct: 506 KTQVEKIQTWLRMF-PKNQRTGFKMPGK--DGSGTHRAIMIHGPPGIGKTTAAHLVAKLE 562
Query: 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEV 481
G+ +E NASD+R K + G+ G S L+ + + + K VLIMDEV
Sbjct: 563 GYDIVESNASDTRSKK--LVETGLKG--VLSTTSLMGYFSRGVDDVEASKKKLVLIMDEV 618
Query: 482 DGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
DGMSAGDRGG+ L A K +++P+I ICNDR K+K D+ FR+P I R
Sbjct: 619 DGMSAGDRGGVGALAAVCKKTQVPMILICNDRKLPKMKPFDFVTYDVPFRRPTTDMIRSR 678
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD 601
+ IA EGL++ + L + DIR +N + L + Y+D + + K
Sbjct: 679 ITTIAYREGLKMPANVINALIEGSGADIRQVVNMISTAKLDEQNLSYEDSKDMSKAWQKH 738
Query: 602 EDISPFTAVDKLFG---FN-GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGR-- 655
+ P+ V K+ G FN ++++ +L +D D PL++QENY+ P + R
Sbjct: 739 IILKPWDMVGKILGGGLFNPAANSSLNDKTELYFNDHDFAPLMLQENYLGSNPQRSNRFN 798
Query: 656 --DEVKRLS---LIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQR 709
++KRL+ L+++AAESISDGD+ + I QQW L + ++ S + PA+ ++G
Sbjct: 799 SNPKMKRLAELDLVSKAAESISDGDLVDRMIHGSQQQWSLMPAHAIFSFVRPASFVYG-- 856
Query: 710 ETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLK 769
TL + RF WLGKNS GK R ++++ H+ R S R +R Y LL +
Sbjct: 857 -TLAGHQ---TRFTAWLGKNSNQGKLSRFIKEIQ-GHMRLRVS-ADRHEIRQTYMPLLFE 910
Query: 770 QLTEPLRVLPKDEL 783
+L + L+ KD +
Sbjct: 911 KLVKKLQTDGKDAV 924
>gi|392592440|gb|EIW81766.1| DNA replication factor C, large subunit [Coniophora puteana
RWD-64-598 SS2]
Length = 999
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 220/657 (33%), Positives = 328/657 (49%), Gaps = 58/657 (8%)
Query: 143 DVKKTESPLKSSGRGRGGRGASG--APAVGRGRGGGRGGFMNFGERK-----DPPHKGEK 195
D K ++P+ + + GAS APA + N+ + K P G K
Sbjct: 214 DTPKAKTPISTPKKKADTNGASSSVAPAPAPAKQ------FNWAQAKAAKLAGPSAPGSK 267
Query: 196 EVPEGAPDC---LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
+VP+ P C L GLTFV +G L S R+EA+DL KRHGGRVTG S KT++++ ++
Sbjct: 268 QVPD--PQCDEPLLGLTFVFTGELSSFSRDEAQDLAKRHGGRVTGQPSSKTSFVVLGDNA 325
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEA 312
+K + L ED ++I P ++KK EK ++ + + + IE
Sbjct: 326 GPSKVAAITKNNLKTLNEDEFLELIGTRVPDDDELDEKTKKKREKDKEAI-RAAAKEIE- 383
Query: 313 KSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWL 372
+R + A K + I SS WT KY P+ EI GN+ V++L WL
Sbjct: 384 ----------KRERHAAKDTKGSAKAIDMSSALWTTKYAPQNLKEICGNKGQVEKLQQWL 433
Query: 373 AHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432
W + +G K+ GK N + +A +++G PG+GKTT+A + ++ GF IE+NASD
Sbjct: 434 KDWKSSY-KSGFKKPGK--NGMNIFRAVLITGPPGIGKTTSAHMCARLEGFTPIEMNASD 490
Query: 433 SRGKADAKISKGIGGSNANSIKELVSNEALSAN----MDRSKHPKTVLIMDEVDGMSAGD 488
R K + G+ +N + + EA +A+ DRS LIMDEVDGMSAGD
Sbjct: 491 VRSKR--MVESGLNINNTSLDGWMGGPEATNASGVAITDRS-----CLIMDEVDGMSAGD 543
Query: 489 RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
RGG+ L A IK S+IPIICI NDR +QKLK L+ +L FRKP I R+M IA
Sbjct: 544 RGGVGALNALIKKSRIPIICIANDRGAQKLKPLIATTFNLPFRKPDATAIRSRMMSIAYK 603
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFT 608
E +++ ++ L DIR +N L LS + + +D+ + + K ++PF
Sbjct: 604 EKMQIPPNVVDALVQGSQSDIRQVLNMLSTWRLSNTAMTFDEGKNLAKINEKYSILTPFD 663
Query: 609 AVDKLFG----FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRP----SSAGRDE-VK 659
K+ G N + + ++++L D VPL IQENY+ P + AG ++ +K
Sbjct: 664 VTFKMLGPYMFSNTARETLGDKMELYFHDHSFVPLFIQENYLKTDPVRVRNLAGPEKALK 723
Query: 660 RLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERN 718
+L L+ +AA SISDGD+ + I Q W L ++ S + PA ++G G +N
Sbjct: 724 QLQLMDKAAASISDGDLVDSLIHGPEQHWSLMPLHAVCSTVRPAYHVYGPGGGY--GSKN 781
Query: 719 FNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F +LG+NS MGK R L D+ K + +R Y L + +PL
Sbjct: 782 PITFPQYLGQNSKMGKLSRQLTDVQVRM--RLKVSGDKSEIRQSYIPALFPHIVKPL 836
>gi|66808577|ref|XP_638011.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74853625|sp|Q54MH9.1|RFC1_DICDI RecName: Full=Probable replication factor C subunit 1; AltName:
Full=Activator 1 subunit 1
gi|60466460|gb|EAL64515.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 1401
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 166/445 (37%), Positives = 245/445 (55%), Gaps = 45/445 (10%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRPK +IVGN + ++ WL WN DAS + A +LS
Sbjct: 849 ILWVEKYRPKVIEDIVGNPGIFQEFGKWLDQWN-----------STAPRDASKKNAVLLS 897
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK-----------ISKGIGGSNANS 452
G PG+GKT+AA L+C+ GF+AIE+NASD+R K++ K I+K G +N ++
Sbjct: 898 GPPGIGKTSAALLICKQKGFEAIELNASDARSKSEIKRLLSGVSDNQNITKFFGTTNQDT 957
Query: 453 IKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICN 511
K++ +N+ + KT +I+DE+DG S DRGGIA++I IK SK+P IC+CN
Sbjct: 958 GKDVQANKKI----------KTAIILDEIDGSSGNSDRGGIAEIIGLIKKSKMPFICLCN 1007
Query: 512 DRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571
D YS K+ SL N+C DL+ RKP +++ RL+ IA EG++V+ +E++ + DIR
Sbjct: 1008 DYYSSKVTSLRNHCMDLKLRKPTLNQVSSRLLAIAKHEGMKVSSYMIEKVYTSSHSDIRQ 1067
Query: 572 AINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSM 631
+IN LQ MS S D++ Q L KD DISPFTA + + + + ++++D
Sbjct: 1068 SINTLQMMSRSKRDYNNDNVTQSL--QEKDFDISPFTAAELILREDNSNI--NKKLDYFF 1123
Query: 632 SDPDLVPLLIQENYINYRPSSAG-RDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLS 690
SD LVPL+IQENY+ RP G + + LI+ AA+++SD D F I + W L
Sbjct: 1124 SDFSLVPLIIQENYLKTRPYGGGSQSKYNDCELISMAADALSDSDQFGRAIGKEMAWNLL 1183
Query: 691 QSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASR 750
+ + SCIIP+ + G F +LGK S K R + +L H ++
Sbjct: 1184 PTYGVTSCIIPSGYIRGSPPMPLS-------FPSYLGKYSNASKQQRFVRELQLHMRSTS 1236
Query: 751 KSKLGRDTLRLDYFSLLLKQLTEPL 775
+ + RD RL Y +L L +PL
Sbjct: 1237 NTFVNRDETRLYYVPMLKHHLIQPL 1261
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
FM R PP+KG K P+G +CL G F++SG +D ER+E D+IKR GG+V S
Sbjct: 617 FMYMNGRPTPPNKGSKPRPQGKENCLRGKVFLVSGVMDCFERDEMHDIIKRWGGKVAKSA 676
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAES 291
K NYL+ +D+ K AK++G +TED +MI + P K ++ E+
Sbjct: 677 VKLLNYLVSGKDVGEKKLEGAKKVGAKIITEDEFLEMINKTLP-KPVSTTET 727
>gi|406863946|gb|EKD16992.1| hypothetical protein MBM_04569 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1072
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 206/626 (32%), Positives = 318/626 (50%), Gaps = 64/626 (10%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
PP G KE+P G +CL GL FV +G L++L R+E +L+KR+GG+VTG+ S KT++++
Sbjct: 306 PPAAGIKEIPTGEDNCLAGLNFVFTGLLETLSRDEGTELVKRYGGKVTGAPSGKTSFVVL 365
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPK---- 304
D +K K + L + EDGLF +I + P ++KS+EK A + K
Sbjct: 366 GNDAGPSKLRKIQALKIKTINEDGLFALI-SKLPADGGDGKAAEKSIEKKKAEMEKIKKD 424
Query: 305 ---------KSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTP 355
+ E A K E+ P K+ N Q WT KY P
Sbjct: 425 AEEMEREEKRKAAEFEKAEKEARKRAAEKGFAAPPPVKKVDPNAQ----LWTSKYAPTAI 480
Query: 356 NEIVGNQQLVKQLHTWLAHW----NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKT 411
N+I GN+ V+++ WL W F G + G +A I+ G PG+GKT
Sbjct: 481 NQICGNKAQVEKIQAWLKGWPKAHRHNFQMKGAEGLG-------GYRAIIIHGPPGIGKT 533
Query: 412 TAAKLVCQMLGFQAIEVNASDSRGK--ADAKISKGIGGSNANSIKELVSNEALSANMDRS 469
TAA + ++ G+ IE NASD+R K ++ +S+ + N S+ + + N+ +
Sbjct: 534 TAAHMAAKLSGYDVIESNASDTRSKKLVESGLSEVL---NNTSLNGFFAGDGKDVNLQKK 590
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
K VLIMDEVDGMSAGDRGG+ L K + IP+I ICN+R K+K D+
Sbjct: 591 K---IVLIMDEVDGMSAGDRGGVGALAKVCKKTDIPMILICNERKLPKMKPFDFVTFDIP 647
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
FR+P +++ R+ I + EGL++ ++ L + N DIR IN + L S + +D
Sbjct: 648 FRRPTLEQVRSRIATICHREGLKLPGNVIDALIEGSNRDIRQIINMISTAKLDQSAMDFD 707
Query: 590 DIRQRLLSSAKDEDI--SPFTAVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLLI 641
+ + +S A ++ I P+ KL G GG K ++++I+L +D + L+I
Sbjct: 708 --QGKAMSKAWEKHIVLKPWDICHKLLG--GGMFAPSSKATLNDKIELYFNDHEFSYLMI 763
Query: 642 QENYINYRPSSAGRDE-----VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSL 695
QENY++ +P+ A + +K L L +AAESISDGD+ + I QQW L + ++
Sbjct: 764 QENYLSTKPALASNMDAREARLKALQLADQAAESISDGDLVDRMIHGSQQQWSLMPTHAV 823
Query: 696 ASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG 755
S + PA+ G L G+ F + WLG NS +GK R ++++ H+ R S
Sbjct: 824 FSAVRPASFTAG----LMTGQTAFTK---WLGNNSKLGKLTRFVKEIQ-SHMRLRTSG-D 874
Query: 756 RDTLRLDYFSLLLKQLTEPLRVLPKD 781
R +R Y +L Q+ + L + KD
Sbjct: 875 RHEIRQQYLPVLWTQMIKRLELEGKD 900
>gi|444323840|ref|XP_004182560.1| hypothetical protein TBLA_0J00410 [Tetrapisispora blattae CBS 6284]
gi|387515608|emb|CCH63041.1| hypothetical protein TBLA_0J00410 [Tetrapisispora blattae CBS 6284]
Length = 904
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 200/579 (34%), Positives = 291/579 (50%), Gaps = 30/579 (5%)
Query: 197 VPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAK 256
+PEG P+CL GLT V +G L ++ER AE+L KR+G RVT S+S KT+ ++ ++ K
Sbjct: 194 LPEGKPNCLLGLTMVFTGQLPTIERGVAENLAKRYGARVTKSISGKTSVVVLGDEAGPKK 253
Query: 257 STKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTS 316
K K+LG + EDGL +I K +++ A L AK
Sbjct: 254 LEKIKQLGIKAIDEDGLKQLISGMPGGGGSGVEAEKARLKQEAEELKVMKEVEEIAKKEK 313
Query: 317 APKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN 376
+ ++K + A K +Q L WT KY P ++I GN+ +VK+L TWLA+W+
Sbjct: 314 EAEIKKSKLKASNNDAPHKVDVREQDKL-WTVKYAPTNISQICGNKTVVKRLTTWLANWD 372
Query: 377 EKFLDTGTKRNGKKQNDASA-EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG 435
D K D + +AA+L G PG+GKTTAA LV + LG+ +E NASD R
Sbjct: 373 ----DNKKKGFKVVGKDGNGIYRAAMLHGPPGIGKTTAAHLVAKDLGYDILEQNASDVRS 428
Query: 436 KADAKISKGIGGSNANSIKELVSNEALSANMDRS---KHPKTVLIMDEVDGMSAGDRGGI 492
K+ G NA +V N D K ++IMDEVDGMS GDRGG+
Sbjct: 429 KSLL----NAGVKNALDNMSVVGFFKTHENKDHDITGNAKKFLIIMDEVDGMSGGDRGGV 484
Query: 493 ADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLE 552
L + ++ P+I ICN+R K++ C DL FR+P I RLM IA EG +
Sbjct: 485 GQLAQFCRKTETPMILICNERNLPKMRPFDRVCLDLPFRRPDANSIKSRLMTIAVREGFK 544
Query: 553 VNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDK 612
++ ++ L DIR IN L +S + I +++I K + PF K
Sbjct: 545 LDPNIIDRLVQATRADIRQIINLLSTVSKTTKSINHENILTISKEWEKQIALKPFDITSK 604
Query: 613 LFG------FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIAR 666
L +++++ L D D PL+IQENY++ RPS R + L +A
Sbjct: 605 LLSGSIYTELGSKTFTLNDKMGLYFDDFDFTPLMIQENYLSTRPSVLPRGQ-SHLEAVAN 663
Query: 667 AAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGW 725
AA SIS+GD+ +IR N+Q W L ++ S + P++++ GQ G NF W
Sbjct: 664 AANSISEGDLVERKIRSNEQLWSLLPLHAVMSSVRPSSMVAGQM----AGRINFTT---W 716
Query: 726 LGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYF 764
LG+NS M K LR+L++L +H S S + + RL+Y
Sbjct: 717 LGQNSKMNKYLRILQELQYHTRLSTSS--DKTSFRLEYM 753
>gi|196009297|ref|XP_002114514.1| hypothetical protein TRIADDRAFT_27705 [Trichoplax adhaerens]
gi|190583533|gb|EDV23604.1| hypothetical protein TRIADDRAFT_27705 [Trichoplax adhaerens]
Length = 716
Score = 292 bits (747), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 217/611 (35%), Positives = 322/611 (52%), Gaps = 62/611 (10%)
Query: 200 GAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRV--TGSVSKKTNYLLCDEDIAGAKS 257
G +CL GL FVI+G LD++ERE A +LI+ GG+V +GS+SKKTNYL+ D K
Sbjct: 1 GQENCLSGLVFVITGVLDTIERETAIELIQSLGGKVNVSGSISKKTNYLVVGRDPGLTKL 60
Query: 258 TKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEK-----VAASLPKKS---PQN 309
KAK T L E+ +D+I ++ P K L +++ K V + PK S +N
Sbjct: 61 EKAKNFSTKQLDENSFYDLI-STMPAKPLVTSKTDKKKTTVNKTPVKVNTPKTSIGDDKN 119
Query: 310 IEAKSTSAPKAPIERMKT-------VASPAKRKGQNIQQSSLT----------WTEKYRP 352
I++K T A P ++ T +S A K +N+ S + W +KY+P
Sbjct: 120 IDSKPT-ANITPTKKNVTENTFESSSSSIANIKPENLNTQSASKKSSNSVTEMWVDKYKP 178
Query: 353 KTPNEIVGNQ---QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMG 409
+ IVG Q V +L WL W+E T T ++ + KAA+LSG PG+G
Sbjct: 179 SSIKAIVGQQGAKSCVNKLLLWLKKWHENN-STATHKHVLSREMGFTFKAALLSGPPGIG 237
Query: 410 KTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS--ANMD 467
KTT+A LVC+ + +E+NASD+RGK KG+ I E+ +N++++ M+
Sbjct: 238 KTTSALLVCRECNYDVVELNASDARGK------KGLEAV----ISEIFNNKSIAGFTAMN 287
Query: 468 RSKHPKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCS 526
+K + L+MDEVDGMS D RGG+ +LI+ IK +KIPIIC+CNDR K++SL NYC
Sbjct: 288 NNKSKRLALVMDEVDGMSGNDDRGGMQELISIIKKTKIPIICMCNDRNHPKIRSLANYCF 347
Query: 527 DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVI 586
DLRF++PR ++I LM IA EG+++ +++ N DIR +I+ L + S
Sbjct: 348 DLRFQRPRSEQICSTLMSIAFKEGVKITPQIAQQIVTATNQDIRQSIHNLNMWCANSSGK 407
Query: 587 KYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
+ Q K+ + PF A+ K+F K+ +++ +L +D L+PL +QEN
Sbjct: 408 SSKAVIQ-----TKNIKLGPFEAIRKVFDSSSEASKMTYNDKAELFFTDYSLMPLFVQEN 462
Query: 645 YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAAL 704
Y P + D K L ++ AA+SIS GD+ N + +W L + + +IP A
Sbjct: 463 YPRVVPVKSNGDLQKTLDQLSEAADSISCGDLVNKILYSTNRWGLLPTLAAFGSVIPGAA 522
Query: 705 MHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYF 764
M G G R F WLGKNS GK R+L++L H +S L ++Y
Sbjct: 523 MQGYF-----GSR--IDFPSWLGKNSRQGKYDRILQELALHMRI--RSSANHIQLGMEYV 573
Query: 765 SLLLKQLTEPL 775
L L+ PL
Sbjct: 574 PQLRYLLSGPL 584
>gi|325188879|emb|CCA23408.1| replication factor C subunit putative [Albugo laibachii Nc14]
Length = 774
Score = 292 bits (747), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 204/595 (34%), Positives = 308/595 (51%), Gaps = 79/595 (13%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
E P P+CL G TF +SG ++ R++ LIK GG +T SV++ TNYL + G
Sbjct: 93 ERPAPRPNCLNGTTFALSGIFENCSRDDCIHLIKVCGGSITNSVTRNTNYL-----VLGT 147
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKST 315
K + T +D + K ++ ++QA+ L K++P+ AK
Sbjct: 148 KLENGNDPKTSMKYKDAI------EKNVQIISQAD--------LYDLIKEAPET-PAKQA 192
Query: 316 SAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHW 375
S P + SP + N W +KY PK+ + ++GN +L ++L WL W
Sbjct: 193 SKPNMQQQ------SPVNKTSTN-----YLWVDKYAPKSLDNMIGNIELGRRLGQWLNDW 241
Query: 376 NEKFLDTGTKRN-GKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434
N + K K ++ K +LSG PG+GKTT A LV + GF+ IE NASD+R
Sbjct: 242 NNIHVKKVKKVPLTNKLSENRGAKCILLSGPPGIGKTTIATLVSKHCGFECIEFNASDTR 301
Query: 435 GKADAKISKG-IGGSNA-----NSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD 488
K K + G I GS A ++ +++ S A+ + + V+IMDEVDGMS GD
Sbjct: 302 SKKILKATLGDILGSQALNMHSSNTRKINSRSAIQLS-------RRVVIMDEVDGMSGGD 354
Query: 489 RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
RGG A+LI IK SK P+ICICNDR S K++SL N+ DLR R+P K +I KRL++I
Sbjct: 355 RGGTAELIQLIKKSKTPVICICNDRQSTKVRSLANHSYDLRMRRPTKTQIVKRLLEIGTE 414
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDE-DISPF 607
EGL++ + A+EE +R DIR ++ Q+Q + + + Y D+ + D ++PF
Sbjct: 415 EGLQIEKNAMEEAVERCGNDIRQSLMQMQKWKMVTNKVTYADLVGQQPHEKDDVLRLNPF 474
Query: 608 TAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARA 667
+A ++F N L +R + D DL+PL+I+ENY+ S+ + ++L I +A
Sbjct: 475 SATQQIFQQN---LSFAKRNEAYFVDYDLLPLMIEENYVQSIMSTRKTSD-EKLEAIMKA 530
Query: 668 AESISDGDIFNVQIRRNQQWQL---SQSSSLASCIIPAALMHGQRETLEQGERNFNRFGG 724
A I++GDI + +R Q+W L + ++ +CI + + G F+R
Sbjct: 531 ASFIAEGDIVSKYVRMQQRWDLLTKQAALNVGACIYASGFL---------GHPEFSR--- 578
Query: 725 WLGKNSTMGKNLRLLEDLHF----HHLASRKSKLGRDTLRLDYF----SLLLKQL 771
WLGKNS+ K+ RLL +L H SRK +RLDY +LL QL
Sbjct: 579 WLGKNSSANKSKRLLSELSIRMRSHASGSRK------VIRLDYVPYMKEILLTQL 627
>gi|365986743|ref|XP_003670203.1| hypothetical protein NDAI_0E01440 [Naumovozyma dairenensis CBS 421]
gi|343768973|emb|CCD24960.1| hypothetical protein NDAI_0E01440 [Naumovozyma dairenensis CBS 421]
Length = 892
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 204/614 (33%), Positives = 317/614 (51%), Gaps = 40/614 (6%)
Query: 177 RGGFMNFGERKD---PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGG 233
+ G GE D PP + PEG P+CL GLT V +G L +LERE AE + KR+G
Sbjct: 158 KAGGATTGEEVDAEAPP-----DFPEGQPNCLLGLTIVFTGVLPNLEREVAESIAKRYGA 212
Query: 234 RVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKK 293
RVT S+S +T+ ++ ++ K K K+L + EDG F + + P + ++K
Sbjct: 213 RVTKSISGRTSVVVLGDEAGPKKLEKIKQLKIKAIDEDG-FRQLVSGMPAEGGDGEAAEK 271
Query: 294 SVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPK 353
+ +K K + E T K +M + K ++++ WT KY P
Sbjct: 272 ARQKREQEEAKAVQEAEELLKTENAKKERIKMAKGSGEFINKEDSVREEDKLWTVKYAPT 331
Query: 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPGMGKT 411
+ I GN+ V +L WL +W +T K + K ++ ++A+L G PG+GKT
Sbjct: 332 SSVGICGNKTSVTKLKNWLTNW-----ETNKKNDFKTAGRDGTGIFRSAMLYGPPGIGKT 386
Query: 412 TAAKLVCQMLGFQAIEVNASDSRGKA--DAKISKGIGGSNANSIKELVSNEALSANMDRS 469
TAA LV + LG+ +E NASD R K+ +A + +G N + I + ++ +++
Sbjct: 387 TAAHLVAKELGYDVLEQNASDVRSKSLLNAGVKNALG--NMSVIGYFKNQPGMNVDIN-G 443
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
K V+IMDEVDGMS GDRGG+ L + + P+I ICN+R K++ C DL+
Sbjct: 444 NGKKFVIIMDEVDGMSGGDRGGVGQLAQFCRKTTTPMILICNERNLPKMRPFDRICLDLQ 503
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
FR+P I RLM IA E +++ +++L GDIR IN L +S + I ++
Sbjct: 504 FRRPDANSIKSRLMTIAIREKFKLDPNIIDKLVQTTRGDIRQIINLLSTISKTTKNIGHE 563
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLF-GF-----NGGKLRMDERIDLSMSDPDLVPLLIQE 643
+I++ + K+ + PF KL G+ ++++I L D D PL+IQE
Sbjct: 564 NIQEISKAWEKNIALKPFDIAHKLLDGYIYTDVGSNTFTLNDKIALYFDDFDFAPLMIQE 623
Query: 644 NYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPA 702
NY+N +PS+ V L +A AAESIS D+ +IR ++Q W L ++ S + P+
Sbjct: 624 NYLNCKPSNLPSG-VSHLQAVADAAESISAADLVEKKIRSSEQLWGLLPLHAVLSSVRPS 682
Query: 703 ALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRL 761
+++ G+ G NF+ WLG+NS K RLL++L +H L++ KLG LRL
Sbjct: 683 SMIAGRM----TGRINFS---AWLGQNSKTNKYYRLLQELQYHTRLSTSTDKLG---LRL 732
Query: 762 DYFSLLLKQLTEPL 775
Y ++L EPL
Sbjct: 733 AYLPTFKRRLLEPL 746
>gi|189200012|ref|XP_001936343.1| replication factor C subunit 1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983442|gb|EDU48930.1| replication factor C subunit 1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1096
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 205/604 (33%), Positives = 321/604 (53%), Gaps = 39/604 (6%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
++P+G+ CL GL FV +G L R E+++L+KRHGG+VT + SKKT+Y++ D +
Sbjct: 344 DMPQGSDTCLAGLNFVFTGVLQKWGRTESQELVKRHGGKVTTAPSKKTSYVVLGSDAGPS 403
Query: 256 KSTKAKELGTPFLTEDGLFDMIR----ASKPMKALAQAESKKS-------VEKVAASLPK 304
K K +++ + EDGL +I A + AQA+ ++ +E +AA + K
Sbjct: 404 KLAKIRDMNIKTIDEDGLTQLIEKLTAAGNKGDSKAQADYREKQRKEQEKIELLAAEMEK 463
Query: 305 KSPQ-NIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQ 363
+ + EA + + A KT A+ A + S WT KY P + ++I GN+
Sbjct: 464 EEQKRQKEATAVAKAAAKATGNKTAAATATAQNAGPAVDSRLWTTKYAPTSLSQICGNKT 523
Query: 364 LVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423
V+++ WL + K L TG K GK + + +A IL G PG+GKTTAA LV ++ G+
Sbjct: 524 TVEKIQRWLQMF-PKNLKTGFKMAGK--DGSGVFRAVILHGPPGIGKTTAAHLVAKLEGY 580
Query: 424 QAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRSKHPKTVLIMDEVD 482
+E NASD+R K I G+ G + NS+ + + ++ SK K VLIMDEVD
Sbjct: 581 DIVERNASDTRSKK--LIEDGLRGVLSTNSLHGYFAGDG--KKVEGSKK-KLVLIMDEVD 635
Query: 483 GMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRL 542
GMSAGDRGG+ L A K +++P+I ICNDR K+K DL FR+P +I R+
Sbjct: 636 GMSAGDRGGVGALAAVCKKTEVPMILICNDRRLPKMKPFDYVTYDLPFRRPTVDQIRSRI 695
Query: 543 MQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDE 602
M I EGL++ + L + + DIR +N + L +V+ +D + + K
Sbjct: 696 MTITFREGLKMPPAVINALIEGSHADIRQVVNMISTAKLDQTVMDFDKGKTMSKNWEKHV 755
Query: 603 DISPFTAVDKLFG----FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRP----SSAG 654
+ P+ K+ G + K + ++I+L +D + PL++QENY+ P S +G
Sbjct: 756 VLKPWDITQKILGGGMFASNSKATLHDKIELYFNDHEFSPLMLQENYLGTNPIQSLSYSG 815
Query: 655 RDE-VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETL 712
+++ +K L LI++AA+SISDGD+ + I QQW L + ++ S + PA+ + G
Sbjct: 816 KEKNLKNLELISKAADSISDGDLVDRMIHGSQQQWSLMPTHAVFSFVRPASFVSGSTAG- 874
Query: 713 EQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLT 772
N RF WLGKNST K R+++++ H +S R +R Y LL L
Sbjct: 875 -----NQTRFTSWLGKNSTTNKLSRMIKEIQAH--MRLRSSGDRHEVRQQYVPLLWTDLV 927
Query: 773 EPLR 776
+ L+
Sbjct: 928 QKLQ 931
>gi|336260371|ref|XP_003344981.1| hypothetical protein SMAC_06758 [Sordaria macrospora k-hell]
gi|380095054|emb|CCC07556.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1075
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 198/621 (31%), Positives = 307/621 (49%), Gaps = 56/621 (9%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
PP G E+PEG DCL G TFV +G L ++ RE+A+ L+KR+GG+VTG+ S KT++++
Sbjct: 319 PPMAGTAEIPEGEIDCLAGKTFVFTGLLKTIAREDAQALVKRYGGKVTGAPSSKTDFVVL 378
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQ 308
+D +K K KE G + E+GLF +IR + K ++ +
Sbjct: 379 GDDAGPSKLRKIKEHGIKTIDEEGLFYLIRTMPAGGGTGKGAEKAKQKREEEEKKIREEA 438
Query: 309 NIEAKSTSAPK-------APIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGN 361
+ A + + V+ PA + + Q WT KY P N+I GN
Sbjct: 439 EKLDREEKARRLEAEKEAKKAAAARGVSRPAPAPPKQLSQ---LWTTKYAPTALNQICGN 495
Query: 362 QQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421
+ V+++ WL +W + KR + + +A I+SG PG+GKTTAA L ++
Sbjct: 496 KANVEKIQNWLRNWPKARKYDFQKRGA---DGSGGSRAIIISGPPGIGKTTAAHLAAKLE 552
Query: 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL-------SANMDRSKHPKT 474
G+ IE NASD+R K + N + ++++N +L +D K K
Sbjct: 553 GYDVIESNASDTRSKKLVE----------NGVSDVMTNTSLLGFFAGDGKQVDAGKK-KI 601
Query: 475 VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPR 534
VLIMDEVDGMSAGDRGG+ L + +++P+I ICN+R K+K + D++F++P
Sbjct: 602 VLIMDEVDGMSAGDRGGVGALAKFCRKTEVPLILICNERRLPKMKPFDHVAFDIKFQRPT 661
Query: 535 KQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQR 594
+I R+M I + EGL++ + L + DIR IN + L S + +D +Q
Sbjct: 662 VDQIRSRIMTICHREGLKIPPPVVNALIEGSGKDIRQIINMISTAKLDQSTMDFDQSKQM 721
Query: 595 LLSSAKDEDISPFTAVDKLFGFNGGKL------RMDERIDLSMSDPDLVPLLIQENYINY 648
+ K + P+ KL G GG ++++I+L +D + L+IQENY+
Sbjct: 722 SKAWEKHVILKPWDICQKLIG--GGMFAPSSTATLNDKIELYFNDHEFSYLMIQENYLRS 779
Query: 649 RPSSAGR-------DEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCII 700
RP + + +K L L+ +AAESISDGD+ + I QQW L + ++ S +
Sbjct: 780 RPMALNQKGYTPREQNLKWLELVDQAAESISDGDLVDRMIHGPQQQWSLMPTHAVFSTVR 839
Query: 701 PAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLR 760
P++L+ GQ Q F WLG NS GK R ++H H KS +R
Sbjct: 840 PSSLIAGQFGGQAQ-------FTSWLGNNSKYGKLSRFNREIHAHM--RLKSSGDAHEIR 890
Query: 761 LDYFSLLLKQLTEPLRVLPKD 781
Y +L + + L V KD
Sbjct: 891 QQYMPVLWDKTVKRLEVEGKD 911
>gi|344228229|gb|EGV60115.1| DNA replication factor C, large subunit [Candida tenuis ATCC 10573]
Length = 774
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 198/632 (31%), Positives = 314/632 (49%), Gaps = 74/632 (11%)
Query: 180 FMNFGERKD--PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTG 237
F +RK P G ++PE P CL GLT V +G L +LER +AE++ KR+G +V
Sbjct: 51 FFQLQQRKAQAPQATGSVDIPEAKPHCLSGLTMVFTGVLPNLERTDAENIAKRYGAKVPK 110
Query: 238 SVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA--------SKPMKALAQA 289
S+S KT+ ++ ++ +K K K++ ++E+G ++R+ + +KA +
Sbjct: 111 SISGKTSVVVIGDEAGPSKVQKIKKMHIKAISEEGFLQLLRSMPADGGSGGEAVKAKRKR 170
Query: 290 ESKKS-------------VEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKG 336
E ++S + + + P ++ S+ P P+
Sbjct: 171 EEEESRIIQEAEAEEEQERARQQQAKIQHVPPSVSKHSSRLPAEPV-------------- 216
Query: 337 QNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK----FLDTGTKRNGKKQN 392
+ I WT KY P + ++ GN+ V +L +WL HW + F D G +G
Sbjct: 217 REISNDDKLWTTKYAPTSTLQLCGNKGQVNKLRSWLLHWFDNAKNDFKDPGADGSG---- 272
Query: 393 DASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA--DAKISKGIGGSNA 450
+A ++SG PG+GKTTAA L+ + LGF +E NASD R K+ ++ I + N
Sbjct: 273 ---VFRACLISGPPGIGKTTAAHLIAEDLGFDVLEKNASDVRSKSLLNSDIKSVL---NN 326
Query: 451 NSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICIC 510
S+ N A++ + + LIMDEVDGMS+GD GG L +I+K+P+I IC
Sbjct: 327 TSVMGFFQNR--HADVHQENERRFCLIMDEVDGMSSGDHGGAGALSQFCRITKMPMILIC 384
Query: 511 NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570
ND+ K+++ DL FR+P + E+ R+M I + E ++++ + +L N DIR
Sbjct: 385 NDKSLPKMRTFDRVTYDLAFRRPSENEVKARIMTICHREKIKIDPSIIGQLVQTTNNDIR 444
Query: 571 MAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG------GKLRMD 624
IN L +S + I + + S K + PF V KL NG ++
Sbjct: 445 QMINLLSTVSKTQKTIGAEQSKDFSKSWQKQTVLKPFDIVGKL--LNGQIYSPHSNHTLN 502
Query: 625 ERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRN 684
++IDL +D D PL++QENY+ RPS+ RD+ L +A+AA+ IS D N IR +
Sbjct: 503 DKIDLYFNDIDFTPLMVQENYLYTRPSNC-RDDSDHLRRVAQAADDISASDRINSLIRSS 561
Query: 685 -QQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLH 743
QQW L ++ S + P+ RE + N F GWLG+NS K RLL++L
Sbjct: 562 EQQWSLLPFHAVMSSVKPS------REVAGNISQRIN-FAGWLGQNSKQMKYQRLLQELQ 614
Query: 744 FHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
+H ++ + LRL+Y LL K+L P+
Sbjct: 615 YH--TRLRTSTDKKELRLEYVPLLAKRLAGPI 644
>gi|340522013|gb|EGR52246.1| replication factor C, subunit 1-like protein [Trichoderma reesei
QM6a]
Length = 1028
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 198/613 (32%), Positives = 312/613 (50%), Gaps = 52/613 (8%)
Query: 190 PHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCD 249
P + E+PEG +CL GLTFV +G L ++ REEA+ L+KR+GG+VTG S KT++++
Sbjct: 310 PSQPAGELPEGEEECLSGLTFVFTGVLQTIGREEAQALVKRYGGKVTGQPSSKTSFVVLG 369
Query: 250 EDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSV----------EKVA 299
+D +K K + G + E GLFD+IR + K ++VA
Sbjct: 370 DDAGPSKLAKIRSNGIKTIDEHGLFDLIRKLPAFGGTGKGAQKAQEKKKAEEEKVRQQVA 429
Query: 300 ASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIV 359
++ Q EA+ A + R + ++P K Q T KY P N+I
Sbjct: 430 EMEAEEKAQRREAEK-EAKRLAAARGQPSSTPVKPAAAPTQ----LLTSKYAPTQLNQIC 484
Query: 360 GNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQ 419
GN+ V+++ WL +W + KR + E+A I+SG PG+GKTTAA L +
Sbjct: 485 GNKAQVEKIQRWLHNWPKSKKYNFQKRGA---DGMGGERAIIISGPPGIGKTTAAHLAAK 541
Query: 420 MLGFQAIEVNASDSRGK--ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLI 477
+ G+ +E NASD+R K +A +S + N S+ + + S + ++ K VLI
Sbjct: 542 LEGYDVLESNASDTRSKKLVEAGLSDVM---NNTSLLGFFAGDGKSVHSEKKK---IVLI 595
Query: 478 MDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQE 537
MDEVDGMSAGDRGG+ L + +++P+I ICN+R K+K + D+RF +P +
Sbjct: 596 MDEVDGMSAGDRGGVGALAKFCRKTEVPLILICNERRLPKMKPFDHVAFDIRFNRPTVDQ 655
Query: 538 IAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLS 597
+ R+M I + EGL++ ++ L + N DIR IN + L S + +D + +
Sbjct: 656 VRSRIMTICHREGLKMPPPVVDALIEGSNKDIRQIINMIATAKLDQSTMNFDQTKSMSKA 715
Query: 598 SAKDEDISPFTAVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLLIQENYINYRPS 651
K + P+ K+ G GG K ++++I+L +D + L+IQENY+ +P
Sbjct: 716 WEKHVVLKPWDICQKMLG--GGLFAPASKATLNDKIELYFNDHEFSYLMIQENYLQTKPM 773
Query: 652 SA------GRD-EVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAA 703
+ GR+ +K L L +AAESISDGD+ + I QQW L + ++ S + PA+
Sbjct: 774 ALSGSGYRGREATLKALELFDQAAESISDGDLVDRMIHGPQQQWSLMPTHAVFSTVRPAS 833
Query: 704 LMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDY 763
+ GQ + F WLG NS GK R + ++H H KS + +R +Y
Sbjct: 834 FVAGQLLG--------SNFTSWLGNNSKAGKLGRYIREIHSH--MRLKSSGDHNEVRQEY 883
Query: 764 FSLLLKQLTEPLR 776
+L Q + L+
Sbjct: 884 LPVLWSQTVDRLQ 896
>gi|146322944|ref|XP_755554.2| DNA replication factor C subunit Rfc1 [Aspergillus fumigatus Af293]
gi|129558538|gb|EAL93516.2| DNA replication factor C subunit Rfc1, putative [Aspergillus
fumigatus Af293]
gi|159129617|gb|EDP54731.1| DNA replication factor C subunit Rfc1, putative [Aspergillus
fumigatus A1163]
Length = 1085
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 231/745 (31%), Positives = 347/745 (46%), Gaps = 115/745 (15%)
Query: 108 VKKNSVGATPSKKLKSGSGRAVAQKSVDID-DDEEEDVKKTESPLKSSGRGRGGRGASGA 166
V N A P ++G R KS ID D + ED K ++ P ++ R A
Sbjct: 215 VAMNDAPAEPKSASRTGQKR----KSAAIDRDGDYEDCKTSKGPART-------RAIPSA 263
Query: 167 PAVGRGRG-------------------------------GGRGGFMNFG---ERKDPPHK 192
PA + RG G NF +DP
Sbjct: 264 PAAKKQRGVATKKDEPESKEIQDIFDSIPTIKPPSPPPPSGEKAKFNFAATQRSRDPVAG 323
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
G E+P GA +CL GL+FV +G LD+L REE ++L+K++GG+VT + S KT+Y++ D
Sbjct: 324 GTAELPVGAENCLAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTTAPSSKTSYVVLGSDA 383
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIRASKP---------MKALAQAESKKSVEKVAASLP 303
K K +E + E GLF++IR P A + + ++ +AA +
Sbjct: 384 GPNKLKKIQEHNLRTINEQGLFELIRRLPPNGGDSKAAEKHAAKKKAEEDKIKAMAAEME 443
Query: 304 KKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQ 363
+ + ++AK + PKA + S A Q + WT KY P N I GN+
Sbjct: 444 AEEERKLKAKGSMTPKA------SAGSQAPSATQGAKVDDQLWTTKYAPTAINMICGNKG 497
Query: 364 LVKQLHTWLAHW--NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421
V++L TWL +W N KF R GK + + +A ++ G PG+GKTTAA LV ++
Sbjct: 498 AVEKLQTWLHNWHKNAKF---NFSRPGK--DGSGVYRAVMIHGPPGIGKTTAAHLVAKLE 552
Query: 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDR---SKHPKTVLIM 478
G+ +E NASD+R SK + SN I + S + + + S VLIM
Sbjct: 553 GYDVVETNASDTR-------SKKLVESNLLDILDTTSLQGYFSGEGKKIESTKKNLVLIM 605
Query: 479 DEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEI 538
DEVDGMSAGDRGG+ L++ K + IP+I ICN+R K+K + +L FR+P ++I
Sbjct: 606 DEVDGMSAGDRGGVGALVSLAKKTHIPLILICNERRLPKMKPFDHVTYELPFRRPTAEQI 665
Query: 539 AKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSS 598
RL I EGL++ L+ L + N DIR IN L + L + +D ++ +
Sbjct: 666 RARLSTICFREGLKIPPPVLDSLIEGTNADIRQVINMLSTVKLDQQQLDFDTGKEMSKAW 725
Query: 599 AKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAG 654
K + P+ V K+ + + ++I+L +D + L++QENY+ RP+ AG
Sbjct: 726 QKHVILKPWDIVSKILNAQTFSPNSQTTLGDKIELYFNDHEFSYLMLQENYLRTRPALAG 785
Query: 655 -----RDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQ 708
++K L L AA SISDGD+ + I QQW L + ++ S + PA+ ++G
Sbjct: 786 NYQGKEQKLKLLELADNAASSISDGDLVDRMIHGTQQQWSLMPTHAVFSFVRPASFIYGN 845
Query: 709 RETLEQGERNFNRFGGWLGKNS------------------TMGKNLRLLEDLHFHHLASR 750
ER F WLG+NS GK R ++++ H+ R
Sbjct: 846 -----MVER--PGFTSWLGQNSKQGMSPWCSICVSNINMACAGKLWRYVKEIQ-GHMRLR 897
Query: 751 KSKLGRDTLRLDYFSLLLKQLTEPL 775
S RD +R Y LL +L L
Sbjct: 898 ASG-DRDEIRQQYIPLLWNKLVRRL 921
>gi|164658055|ref|XP_001730153.1| hypothetical protein MGL_2535 [Malassezia globosa CBS 7966]
gi|159104048|gb|EDP42939.1| hypothetical protein MGL_2535 [Malassezia globosa CBS 7966]
Length = 850
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 204/615 (33%), Positives = 307/615 (49%), Gaps = 85/615 (13%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P G K +PEGAP+CL GLT V +G L S+ RE+A DL KR+G +VT + S KT+Y++
Sbjct: 143 PVAPGSKAIPEGAPNCLAGLTLVFTGELSSISREDAIDLAKRYGAKVTTAPSSKTSYVVL 202
Query: 249 DEDIAGAK---STKAKELGTPFLTEDGLFDMI-----RASKP-MKALAQAESKKSVEKVA 299
D AGAK + + +L T + EDG +I R P +K QAE KK V
Sbjct: 203 G-DGAGAKKLETIQKNKLKT--VDEDGFLALIAERGARELDPNVKQKIQAEEKKVVAA-- 257
Query: 300 ASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIV 359
AK+ P P GQ WT KY PK E++
Sbjct: 258 ------------AKALDTPNVP--------------GQ-------LWTSKYAPKQLRELI 284
Query: 360 GNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQ 419
GN+ V +L WL W K K+ G + +A ++SG+PG+GKTTA LVC
Sbjct: 285 GNKAQVDKLQAWLRDW-PKSRKAHFKKPGPHATNTF--RAMLISGAPGIGKTTAVHLVCA 341
Query: 420 MLGFQAIEVNASDSRGK-------ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHP 472
+ G++ +E+NASD+R K +D ++ I G +S + +KH
Sbjct: 342 LEGYETLELNASDTRSKKLLESELSDTIHNRSIAGWTHKQ------QPNVSTSGPDTKHD 395
Query: 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRK 532
+ +I+DEVDGMS GDRGGI + A I+ +++PIICICNDR K++ L+ ++ F K
Sbjct: 396 RLAIILDEVDGMSGGDRGGIGAINALIRKTQVPIICICNDRRHPKMQPLLATTFNMTFSK 455
Query: 533 PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIR 592
P Q I R++ IA EGL++ +++L D+R+ N L LS + + +D +
Sbjct: 456 PTVQAIRSRMLSIAFREGLQIPAEVMDQLIIAAQSDLRLVTNMLSTWKLSHASMSFDQSK 515
Query: 593 QRLLSSAKDEDISPFTAVDKL-----FGFNGGKLRMDERIDLSMSDPDLVPLLIQENYIN 647
K +PF+ +L FG K +++++D D +VPL+++ENY+
Sbjct: 516 SFGALHQKPTMHTPFSLYGELMSPQRFG-PLNKQSLNDKLDFYFQDHSIVPLMVEENYLK 574
Query: 648 YRPSSAGRDEV------KRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCII 700
+P S ++ K L L+++AA SISDGD+ + +R QQ W L +AS I
Sbjct: 575 SQPLSVQKESTPPLRDWKHLELLSKAAHSISDGDLIDTMMRGPQQHWSLLPLHGIASTIR 634
Query: 701 PAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLR 760
P +L +G G +F F +LG+NS + R L DL H ++ +D +R
Sbjct: 635 PCSLTYG-------GHSSFPAFPAFLGQNSKRLRLQRQLVDLQTH--LRLRTTGSKDDVR 685
Query: 761 LDYFSLLLKQLTEPL 775
Y LL + +P+
Sbjct: 686 QSYVPGLLSLVVDPV 700
>gi|390594938|gb|EIN04346.1| DNA replication factor C large subunit [Punctularia strigosozonata
HHB-11173 SS5]
Length = 869
Score = 289 bits (739), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 204/613 (33%), Positives = 307/613 (50%), Gaps = 50/613 (8%)
Query: 189 PPHKGEKEVPEGAP-DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLL 247
P G K VPE DCL GLTFV +G L S R+EA D+ KR+GGRVT S KT+Y++
Sbjct: 180 PVASGSKAVPEPKTMDCLMGLTFVFTGELSSFSRDEAIDIAKRYGGRVTLQPSSKTSYVI 239
Query: 248 CDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKS- 306
+D AK ++ L ED ++I + + K EK+AA + K+
Sbjct: 240 LGDDAGPAKLKAIEKNNLKTLNEDQFLNLIAT----RVGPSGKGGKVDEKLAAKMKKEQR 295
Query: 307 -----PQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGN 361
+ +E + KA + + ++P K + + S+ WT++Y P+T EI GN
Sbjct: 296 AIEEGAKELEQRERDQAKAAKKAQTSGSAP---KAKPVDASTQLWTQRYAPQTLKEICGN 352
Query: 362 QQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421
+ V++L WL W L G K+ GK N + +A +++G PG+GKTT+A LV ++
Sbjct: 353 KSQVEKLQQWLHDWPNS-LKAGFKKPGK--NGMNVFRAILITGPPGIGKTTSAHLVAKLE 409
Query: 422 GFQAIEVNASDSRGKADAKISKGI---------GGSNANSIKELVSNEALSANMDRSKHP 472
G+ IE+NASD+R K + S I GG +A + + E
Sbjct: 410 GYTPIELNASDARSKKLVESSTNIMNQSLDGWMGGGDATNAAGIKITE------------ 457
Query: 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRK 532
K+ LIMDEVDGMSAGDRGGI L A I+ ++IPIICI NDR +QK+K L L F++
Sbjct: 458 KSCLIMDEVDGMSAGDRGGIGALNALIRKTRIPIICIANDRTAQKMKPLQGSTFSLTFKR 517
Query: 533 PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIR 592
P I R+M IA E L+V +++L + DIR +N L LS + +D+ +
Sbjct: 518 PEAATIRSRIMSIAFREKLKVPANVVDQLINSAQSDIRQVLNMLSTWKLSSDSMDFDEGK 577
Query: 593 QRLLSSAKDEDISPFTAVDKLFG---FN-GGKLRMDERIDLSMSDPDLVPLLIQENYINY 648
+ K ++P+ + K+FG F+ K + ++++L D +PL +QENY+
Sbjct: 578 TLAKLNEKHTIMTPYNVISKVFGPYTFSPTSKETLSDKMELYFHDHAFIPLFVQENYLRA 637
Query: 649 RPSSA----GRDEV-KRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPA 702
P+ G +V K L L+ +AA SISD D+ + I Q W L S++S + PA
Sbjct: 638 LPNRLKNLDGPPKVLKHLELMDKAASSISDSDLIDSMIHGPEQHWSLMPLHSVSSFVYPA 697
Query: 703 ALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLD 762
+L++G + F WLG+NS K R L + K + +R
Sbjct: 698 SLLYGFMPQYSKEPGTAISFPQWLGQNSKGQKLSRQLSETQIR--MRLKVSGDKAEIRQS 755
Query: 763 YFSLLLKQLTEPL 775
Y L + +PL
Sbjct: 756 YLPALFPHIVKPL 768
>gi|121715788|ref|XP_001275503.1| chromosome transmission fidelity factor [Aspergillus clavatus NRRL
1]
gi|119403660|gb|EAW14077.1| chromosome transmission fidelity factor [Aspergillus clavatus NRRL
1]
Length = 1068
Score = 288 bits (737), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 221/702 (31%), Positives = 346/702 (49%), Gaps = 83/702 (11%)
Query: 128 AVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRGG------------ 175
A +KS +D DE+ +V K P+K + G + + APA + RG
Sbjct: 233 ARKRKSEAVDRDEDYEVAK---PIKGAA---GRKTNASAPATKKARGSAAQKDQPESKEI 286
Query: 176 -------------------GRGGFMNFG---ERKDPPHKGEKEVPEGAPDCLGGLTFVIS 213
G NF +DP G E+P GA +CL GL+FV +
Sbjct: 287 QDIFDSIPTVKPPSPPPPTGEKAKFNFAATQRSRDPVGGGSTELPVGAENCLAGLSFVFT 346
Query: 214 GTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGL 273
G LD+L R+E + L+K++GG+VT + S KT+Y++ D K ++ + E+GL
Sbjct: 347 GVLDTLGRDEGQALVKKYGGKVTTAPSSKTSYVVLGSDAGPKKLKTIQDHKLKTINEEGL 406
Query: 274 FDMIR---------ASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIER 324
F++IR + A + ++ ++ +AA + ++ + +AK A KAP+
Sbjct: 407 FELIRRLPANGGDSKAAEKHAAKKKVEEEKIKAMAAEIEEEEKRRQKAKEALASKAPVGS 466
Query: 325 MKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGT 384
+S A R + WT KY P + N I GN+ V++L +WL W+ K
Sbjct: 467 QPPSSSQAARTDDQL------WTAKYAPTSINMICGNKTAVEKLQSWLHDWH-KNAKVNF 519
Query: 385 KRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG 444
R GK + + +A ++ G PG+GKTT+A LV ++ GF +E NASD+R K + G
Sbjct: 520 SRPGK--DGSGIYRAVMIHGPPGIGKTTSAHLVAKIEGFDVVETNASDTRSKK--LVESG 575
Query: 445 IGGS-NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISK 503
+G + S++ S+E +D +K VLIMDEVDGMSAGDRGG+ L A K +
Sbjct: 576 LGDILDTTSLQGYFSSEG--KKVDSAKK-NLVLIMDEVDGMSAGDRGGVGALAAIAKKTH 632
Query: 504 IPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELAD 563
IP+I ICN+R K+K + +L FR+P ++I RL I EGL++ L+ L +
Sbjct: 633 IPLILICNERRLPKMKPFDHVTYELPFRRPTAEQIRARLSTICFREGLKIPPPVLDGLIE 692
Query: 564 RVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFN----GG 619
N DIR IN L + L + YD +Q + K + P+ V K+
Sbjct: 693 GTNSDIRQVINMLSTVKLDQHNLDYDKGQQMSKAWEKHVILKPWDIVGKILNAQTFAPSS 752
Query: 620 KLRMDERIDLSMSDPDLVPLLIQENYINYRPSSA----GRDE-VKRLSLIARAAESISDG 674
K + ++I+L +D + L++QENY+ RP+ A GR++ +K L L AA SISDG
Sbjct: 753 KTTLGDKIELYFNDHEFSYLMLQENYLRTRPTLANNYQGREQKLKLLELADNAASSISDG 812
Query: 675 DIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMG 733
D+ + I QQW L + ++ S + PA+ ++G +E+ F WLG+NS G
Sbjct: 813 DLVDRMIHGTQQQWGLMPTHAVFSFVRPASFVYGN--MMER-----PGFTSWLGQNSKQG 865
Query: 734 KNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
K R ++++ H ++ RD +R Y L + L
Sbjct: 866 KLWRYVKEIQGH--MRLRASADRDEIRQQYIPSLWDNMVRRL 905
>gi|349581374|dbj|GAA26532.1| K7_Rfc1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 860
Score = 288 bits (737), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 205/598 (34%), Positives = 309/598 (51%), Gaps = 51/598 (8%)
Query: 198 PEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKS 257
PEG P+CL GLT V +G L +LER +E L KR+G RVT S+S KT+ ++ ++ K
Sbjct: 151 PEGKPNCLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVLGDEAGPKKL 210
Query: 258 TKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSA 317
K K+L + E+G F + A P A+ ++ EK L ++ NI K
Sbjct: 211 EKIKQLKIKAIDEEG-FKQLIAGMP----AEGGDGEAAEKARRKLEEQ--HNIATKEAEL 263
Query: 318 -PKAPIERMKTVASPAKRKGQNIQQSSLT------WTEKYRPKTPNEIVGNQQLVKQLHT 370
K ER K +A+ + G ++++ ++ WT KY P ++ GN+ V +L
Sbjct: 264 LVKKEEERSKKLAA-TRVSGGHLERDNVVREEDKLWTVKYAPTNLQQVCGNKGSVMKLKN 322
Query: 371 WLAHWNEKFLDTGTKRNGKKQ---NDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
WLA+W +K+NG K + + +AA+L G PG+GKTTAA LV Q LG+ +E
Sbjct: 323 WLANWE------NSKKNGFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE 376
Query: 428 VNASDSRGKADAKISKGIGGS--NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS 485
NASD R K ++ G+ + N + + NE + N++ KH V+IMDEVDGMS
Sbjct: 377 QNASDVRSKT--LLNAGVKNALDNMSVVGYFKHNEE-AQNLN-GKH--FVIIMDEVDGMS 430
Query: 486 AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQI 545
GDRGG+ L + + P+I ICN+R K++ C D++FR+P I RLM I
Sbjct: 431 GGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTI 490
Query: 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDIS 605
A E +++ ++ L GDIR IN L +S + I +++I + + K+ +
Sbjct: 491 AIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIALK 550
Query: 606 PFTAVDKLF------GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
PF K+ ++++I L D D PL+IQENY++ RPS +
Sbjct: 551 PFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPGQ-S 609
Query: 660 RLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERN 718
L +A AA IS GDI +IR ++Q W L ++ S + PA+ + G G N
Sbjct: 610 HLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAGHM----AGRIN 665
Query: 719 FNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F WLG+NS GK RLL+++H+H L + K+G LRLDY K+L +P
Sbjct: 666 FT---AWLGQNSKSGKYYRLLQEIHYHTRLGTSTDKIG---LRLDYLPTFRKRLLDPF 717
>gi|219113609|ref|XP_002186388.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583238|gb|ACI65858.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 942
Score = 288 bits (737), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 221/641 (34%), Positives = 312/641 (48%), Gaps = 82/641 (12%)
Query: 186 RKDPP-----HKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVS 240
++DPP + V + AP+CL G TFV SG L +L RE+ ++++K GGR+TG+VS
Sbjct: 177 KRDPPLEPKLTQSSFNVDKAAPECLRGCTFVFSGVLPNLSREDGQEMVKTLGGRITGAVS 236
Query: 241 KKTNYLLCDEDIA-------GAKSTKAKELGTPFLT-EDGLFDM--------IRASKPMK 284
TNYL+ E++ G+K +A + GT + E+ + + I A +
Sbjct: 237 SLTNYLVVGEELEDGRVYTEGSKYKRAVQEGTHIVQGEEAFYGLLQQYNDKEIAAGNALL 296
Query: 285 ALAQAESKKSVEKVAASLPKKSPQNIEAK------------STSAPKAPIERMKTVASPA 332
A S+ A KK+P N AK TS +P E ++SP
Sbjct: 297 NTAPKLSQSEAPLAANPYAKKAPNNPYAKPALSNPYVKAKPYTSGKPSPAE----ISSPV 352
Query: 333 KRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKK-Q 391
K ++L W +KY+P EI+GN + VK+L WL+ W +KF +K GK
Sbjct: 353 DIKADRSSGANLLWVDKYKPTRSGEILGNAESVKKLGLWLSSWEQKF--NNSKAVGKGVA 410
Query: 392 NDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG-IGGSNA 450
N KAA+LSG PG+G T +V + G IE NASD R K K G I GS
Sbjct: 411 NPNDRFKAALLSGPPGIGTT----IVAKESGRDVIEFNASDVRSKKAIKDDMGDITGSYT 466
Query: 451 NSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICIC 510
+ NE +S K +IMDEVDGM AGDR G+++LI IK S++PIICIC
Sbjct: 467 LEFGKPAINEK-----RQSSRIKRCIIMDEVDGMGAGDRSGMSELIQMIKKSRVPIICIC 521
Query: 511 NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570
NDR SQK+KSL+ YC DLR+R+P K IA R ++IA EG V + A E +A+ D+R
Sbjct: 522 NDRQSQKMKSLLPYCMDLRYRRPTKSVIANRAVRIAAQEGFTVEQNAAEAIAESCGNDVR 581
Query: 571 MAINQLQYM---SLSLSVIKYDDIRQRLLSSAKDE--DISPFTAVDKLF----GFNGG-- 619
+N +Q S S S + Y D++QR S KDE +S F A + G G
Sbjct: 582 QVLNCMQMWASDSSSESRMTYKDLKQRESSINKDEILRVSLFDAARNILEGRRGLQGADA 641
Query: 620 ---KLRMDERIDLSMSDPDLVPLLIQENYI-----NYRPSSAGRDEVKRLSLIAR---AA 668
+ R D D + V LL+Q+NYI + + D+ L ++ R A+
Sbjct: 642 STERQHFFRRNDAFFVDYNFVGLLVQQNYIKVMQGQFNDAKRSNDQSNILGVLERMSQAS 701
Query: 669 ESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAAL--MHGQRETLEQGERNFNRFGGWL 726
+++SD +R Q W L L C + A H + F WL
Sbjct: 702 DAMSDFAEAENGLRGGQNWSL-----LPFCAMLAVKTGFHAGGPNGGGLPGFPD-FTSWL 755
Query: 727 GKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLL 767
G+NS+ GK RLL +L HH+ + S G +RL Y +L
Sbjct: 756 GRNSSKGKKARLLHELQ-HHMNYKISG-GAQEMRLSYLPVL 794
>gi|151945307|gb|EDN63550.1| replication factor C subunit 1 [Saccharomyces cerevisiae YJM789]
Length = 861
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 204/598 (34%), Positives = 309/598 (51%), Gaps = 51/598 (8%)
Query: 198 PEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKS 257
PEG P+CL GLT V +G L +LER +E L KR+G RVT S+S KT+ ++ ++ K
Sbjct: 151 PEGKPNCLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVLGDEAGPKKL 210
Query: 258 TKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSA 317
K K+L + E+G F + A P A+ ++ EK L ++ NI K
Sbjct: 211 EKIKQLKIKAIDEEG-FKQLIAGMP----AEGGDGEAAEKARRKLEEQ--HNIATKEAEL 263
Query: 318 -PKAPIERMKTVASPAKRKGQNIQQSSLT------WTEKYRPKTPNEIVGNQQLVKQLHT 370
K ER K +A+ + G ++++ ++ WT KY P ++ GN+ V +L
Sbjct: 264 LVKKEEERSKKLAA-TRVSGGHLERDNVVREEDKLWTVKYAPTNLQQVCGNKGSVMKLKN 322
Query: 371 WLAHWNEKFLDTGTKRNGKKQ---NDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
WLA+W +K+NG K + + +AA+L G PG+GKTTAA LV Q LG+ +E
Sbjct: 323 WLANWE------NSKKNGFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE 376
Query: 428 VNASDSRGKADAKISKGIGGS--NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS 485
NASD R K ++ G+ + N + + NE + N++ KH V+IMDEVDGMS
Sbjct: 377 QNASDVRSKT--LLNAGVKNALDNMSVVGYFKHNEE-AQNLN-GKH--FVIIMDEVDGMS 430
Query: 486 AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQI 545
GDRGG+ L + + P+I ICN+R K++ C D++FR+P I RLM I
Sbjct: 431 GGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTI 490
Query: 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDIS 605
A E +++ ++ L GDIR IN L +S + I +++I + + K+ +
Sbjct: 491 AIRENFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIALK 550
Query: 606 PFTAVDKLF------GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
PF ++ ++++I L D D PL+IQENY++ RPS +
Sbjct: 551 PFDIAHRMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPGQ-S 609
Query: 660 RLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERN 718
L +A AA IS GDI +IR ++Q W L ++ S + PA+ + G G N
Sbjct: 610 HLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAGHM----AGRIN 665
Query: 719 FNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F WLG+NS GK RLL+++H+H L + K+G LRLDY K+L +P
Sbjct: 666 FT---AWLGQNSKSGKYYRLLQEIHYHTRLGTSTDKIG---LRLDYLPTFRKRLLDPF 717
>gi|378726930|gb|EHY53389.1| replication factor C subunit 1 [Exophiala dermatitidis NIH/UT8656]
Length = 1098
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 197/595 (33%), Positives = 311/595 (52%), Gaps = 34/595 (5%)
Query: 190 PHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCD 249
P G E+P GA +CL GLTFV +G L+SL REE ++L+K++GG+VTG+ S+KTNY++
Sbjct: 327 PPAGTAEIPVGAENCLAGLTFVFTGVLNSLGREEGQNLVKQYGGKVTGAPSRKTNYVVLG 386
Query: 250 EDIAGAKSTKAKELGTPFLTEDGLFDMIRA-------SKPMKALAQAESKKSVEKVAASL 302
+D K ++LG + E+GLF++I+ K +A A+ ++K+ K+
Sbjct: 387 QDAGPKKLETIQKLGIKTIDENGLFELIKRLPANGGDGKAAEAYAEKQAKEEA-KIRKEA 445
Query: 303 PKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQ 362
+ + E + +A A +T A + K Q + W +KY P + + + GN+
Sbjct: 446 EEMERREKERQQEAARAAKAAASRTGAPVSSAKPQKPKSDDRLWVDKYAPDSISSVCGNK 505
Query: 363 QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422
V+ L WL +W + KR G + +AA+L G PG+GKTTAA LV ++ G
Sbjct: 506 SAVEGLQRWLRNWPNS-AKSNFKRAGP--DGKGIFRAALLHGPPGVGKTTAAHLVAKLEG 562
Query: 423 FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVD 482
+ +E NASD+R K + S +G + S+ + + +D SK K VLIMDEVD
Sbjct: 563 YDIVESNASDTRNKKLLEQSL-VGVLDTTSLLGYFAGDG--KKVDPSKR-KLVLIMDEVD 618
Query: 483 GMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRL 542
GMSAGDRGG+ L A K + IP+I ICN+R K++ ++ +FR+P I R+
Sbjct: 619 GMSAGDRGGVGALAAVAKKTNIPMILICNERNLPKMRPFYQVTAEFQFRRPTTDMIRGRV 678
Query: 543 MQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDE 602
I EG+ + + L + NGDIR IN + + L + ++D + + K
Sbjct: 679 ATILFREGMRLPPPIMNALIEGCNGDIRQIINMISTIKLDNKELDFNDTKALSKAWEKHV 738
Query: 603 DISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSA----G 654
+ P+ V K+ K ++++ +L +D + L++QENY+ +PS A G
Sbjct: 739 ILKPWDIVGKILRPQMFAASSKATLNDKTELYFNDHEFSYLMLQENYLKTQPSLASSYHG 798
Query: 655 RD-EVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETL 712
++ +VK L L AA SISDGD+ + I QQW L ++ S + PA+ ++G T
Sbjct: 799 KERDVKLLELFDNAASSISDGDLVDRMIHGSQQQWSLMPVHAIFSFVRPASYVYGNF-TA 857
Query: 713 EQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLL 767
+ G F GWLG+NS GK R L+++ H ++ R +R Y L
Sbjct: 858 QVG------FAGWLGQNSKQGKLSRFLKEIQGHM--RLRANADRHEVRQQYLPAL 904
>gi|409049495|gb|EKM58972.1| hypothetical protein PHACADRAFT_157248 [Phanerochaete carnosa
HHB-10118-sp]
Length = 677
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 202/600 (33%), Positives = 302/600 (50%), Gaps = 32/600 (5%)
Query: 189 PPHKGEKEVPEGA-PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLL 247
P G K VP +CL GL+FV +G L + REEA DL KR GGRV S +T+Y++
Sbjct: 5 PSAPGSKPVPAAKDSNCLAGLSFVFTGELSAFSREEATDLAKRFGGRVVSQPSSRTDYVV 64
Query: 248 CDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSP 307
D +K K+ L EDG ++I P + KK +EK ++ + +
Sbjct: 65 LGADAGPSKLAAIKKNNLKTLDEDGFLNLIATRVP--DYTDDKLKKKIEKEQDAI-RAAA 121
Query: 308 QNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQ 367
+E + +++K + + S W ++Y P T E+ GN+ +++
Sbjct: 122 NELERREKEI----EKKVKGKEKGKDQISNTVPLGSQLWVDRYSPHTLKEVCGNKGQIEK 177
Query: 368 LHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
L WL W L +G K+ GK N + +A +++G PG+GKTTAA L ++ GF IE
Sbjct: 178 LQQWLNDWPSS-LKSGFKKPGK--NAMNTSRAVLITGPPGIGKTTAAHLCAKLAGFTPIE 234
Query: 428 VNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG 487
+NASD+R K + S + SN + + EA +A + K+ LIMDEVDGMSAG
Sbjct: 235 LNASDARSKRLVENSTNV--SNTSLDGWMHGTEATNAAGVKITD-KSCLIMDEVDGMSAG 291
Query: 488 DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
DRGG+ L+A I+ +KIPIICI NDR +QKLK L+ +L FR+P I RL+ IA
Sbjct: 292 DRGGVVALVALIRKTKIPIICIANDRGAQKLKPLIANAFNLPFRRPEAAAIRSRLLTIAF 351
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPF 607
E ++V +++L DIR +N L LS + I +D + + K ++PF
Sbjct: 352 KEKMKVPANVIDQLVMGAQSDIRQVLNMLSTWKLSNNAIDFDQGKDLSKMNEKYTVLTPF 411
Query: 608 TAVDKLFG---FNG-GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRD-----EV 658
K+ G F+ + + ++++L DP VPL +QENY+ +PS D +
Sbjct: 412 DVTYKMLGPYMFSATARETLGDKMELYFHDPSFVPLFMQENYLKTQPSRIKNDAGPEKTL 471
Query: 659 KRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGER 717
K L L+ +AA S+SDGD+ + I Q W L ++ S I PA+ + G +
Sbjct: 472 KHLELMDKAASSLSDGDLVDALIHGPEQHWSLMPLHAVCSTIRPASFL--YGSGGGYGGQ 529
Query: 718 NFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRD--TLRLDYFSLLLKQLTEPL 775
N F WLG+NS K R L D+ A + K+ D LR Y L + +PL
Sbjct: 530 NPMSFPAWLGQNSKQSKLNRELMDMQ----ARMRLKVSSDRHELRQSYIPALFPYVVKPL 585
>gi|213402719|ref|XP_002172132.1| replication factor C subunit 1 [Schizosaccharomyces japonicus
yFS275]
gi|212000179|gb|EEB05839.1| replication factor C subunit 1 [Schizosaccharomyces japonicus
yFS275]
Length = 930
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 206/617 (33%), Positives = 317/617 (51%), Gaps = 59/617 (9%)
Query: 179 GFMNFGERKDPP----HKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGR 234
G M G D P +G K +P G P CL GL+FVI+G L++L R+EA DLIK++GG+
Sbjct: 188 GVMAAGTFADRPTTMGEQGSKPIPSGQPGCLSGLSFVITGILETLTRQEAGDLIKQYGGK 247
Query: 235 VTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMK----ALAQA- 289
VTG+ S KT++++ ++ K K + EDGL +I + P A AQA
Sbjct: 248 VTGAPSTKTDFVVLGDNAGPRKVETIKTHNIRAIDEDGLLFLI-SHLPENGGSGAAAQAV 306
Query: 290 ESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEK 349
++K+ E+V +E + +A +++ G+N S WT+K
Sbjct: 307 QAKREQERV----------KLEQTAQEFARADAAHAAKISA----TGENGAVDSRLWTDK 352
Query: 350 YRPKTPNEIVGNQQLVKQLHTWLAHW-NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGM 408
Y P + +I GN+ LV++L +WL W N + R G + +A ++SG PG+
Sbjct: 353 YAPTSLKDICGNKGLVQKLQSWLHSWPNAR--AANFSRPGP--DGLGLYRAVLISGPPGI 408
Query: 409 GKTTAAKLVCQMLGFQAIEVNASDSRGK--ADAKISKGIGGSNANSIKELVSNEALSANM 466
GKTTAA LV + + +E NASD+R K D + +G +++ S+ +
Sbjct: 409 GKTTAAHLVAHLEDYDVLEFNASDTRSKRMLDEHL---LGVTDSRSLAGYLQGPG-GKRP 464
Query: 467 DRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCS 526
D +K + VLIMDEVDGMSAGDRGG+ L IK ++IPIICICNDR S KL+ L
Sbjct: 465 DANKQ-RLVLIMDEVDGMSAGDRGGVGQLNTIIKKTRIPIICICNDRASPKLRPLDRTTF 523
Query: 527 DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVI 586
D+RFR+P + R+M IA E L++ A+++L + DIR IN L L S +
Sbjct: 524 DMRFRRPDANSLRSRIMSIAYREQLKLAPAAVDQLVQGTHSDIRQIINILSAWRLGQSSL 583
Query: 587 KYDDIRQRLLSSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQ 642
+ +S K + P+ ++ N + ++++++L +D + L++Q
Sbjct: 584 SPAESTAVAKASQKHIVLKPWDICNRYLHGNLFHPSSNVSINDKLELYFNDHEFSYLMVQ 643
Query: 643 ENYINYRPSSAGRD-----EVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLA 696
ENY++ RP ++ ++K L LI++AA+SIS D+ + I QQW L + +L
Sbjct: 644 ENYLSTRPDRLRQEPPKIAKLKHLELISKAADSISQADLVDSLIHGSQQQWSLMPTHALL 703
Query: 697 SCIIPAALM--HGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKL 754
SC+ PA+ + G R+T+ F WLG NS K +R+L +L H K
Sbjct: 704 SCVRPASFVSGFGTRQTV---------FTTWLGNNSKGNKLMRMLRELQLH--MRLKISA 752
Query: 755 GRDTLRLDYFSLLLKQL 771
R +R Y LL L
Sbjct: 753 DRIGVREQYLPLLFSML 769
>gi|242209061|ref|XP_002470379.1| predicted protein [Postia placenta Mad-698-R]
gi|220730549|gb|EED84404.1| predicted protein [Postia placenta Mad-698-R]
Length = 697
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 204/615 (33%), Positives = 308/615 (50%), Gaps = 76/615 (12%)
Query: 193 GEKEVPEGA-PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDED 251
G K +P+ A PDCL GLTFV +G L SL R+EA +L KRHGGRVTG S KT++++ D
Sbjct: 2 GSKPIPQAAAPDCLTGLTFVFTGELSSLSRDEAIELAKRHGGRVTGQPSSKTSFVVLGSD 61
Query: 252 IAGAKSTKAKELGTPFLTEDGLFDMI--RASKPMK-----ALAQAESKKSVEKVAASLPK 304
+K K+ L ED +I R P K Q + ++++ A + +
Sbjct: 62 AGPSKLAAIKKNNLTTLDEDSFLQLIATRVPDPNKLDNKTKKKQEKEEEAIRTAAKEMER 121
Query: 305 KSPQNIE---AKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGN 361
+ Q + AK TSA A ++ WT +Y P+T EI GN
Sbjct: 122 REKQTAQGGGAKGTSANPAIANQL--------------------WTNRYAPQTLKEICGN 161
Query: 362 QQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421
+ V++L WL W L K+ GK + + +A +++G PG+GKTT+A L ++
Sbjct: 162 KGQVEKLQRWLDDWPSN-LKANFKKPGK--DGMNVFRAVLITGPPGIGKTTSAHLCAKLQ 218
Query: 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEV 481
GF IE+NASD+R K ++ GS S E SN D KT LIMDEV
Sbjct: 219 GFTPIELNASDARSKKLVEV-----GSFTCSSDERTSNAVGVTITD-----KTCLIMDEV 268
Query: 482 DGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
DGMSAGDRGG+ L A I+ +KIPIICI NDR + K+K L N +L FR+P I R
Sbjct: 269 DGMSAGDRGGVGALAALIRKTKIPIICIANDRGAPKMKPLSNAAYNLTFRRPEATTIRSR 328
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD 601
++ IA E +++ +++L + DIR +N L LS + +D+ + ++ K
Sbjct: 329 ILSIAFKEKMKIPANVIDQLIEGAQSDIRQVLNMLSTWKLSNDTMNFDEGKALAKANEKY 388
Query: 602 EDISPFTAVDKLFG---FN-GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSA---- 653
++PF + K+ G F+ + ++++++L D VPL IQENY+ +P+
Sbjct: 389 GIMTPFNIIQKMLGPYMFSPTARETLNDKMELYFHDHSFVPLFIQENYLKTQPAKIRNID 448
Query: 654 GRDEV-KRLSLIARAAESISDGDIFNVQIR----------RNQQWQLSQSSSLASCIIPA 702
G +++ K+L L+ +AA SISDGD+ + I Q W L ++ S + PA
Sbjct: 449 GPEKILKQLQLMDKAASSISDGDLVDSLIHGYIRHSLPKISQQHWSLMPLHAVCSTVRPA 508
Query: 703 ALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRD--TLR 760
+ ++G R WLG+NS K +R L ++ A + K+ D +R
Sbjct: 509 SFLYGMGAAYVVCVR-------WLGQNSKQNKLVRQLTEIQ----ARMRVKVSGDKTEIR 557
Query: 761 LDYFSLLLKQLTEPL 775
Y L + +PL
Sbjct: 558 QSYTPALFPHIVKPL 572
>gi|302694127|ref|XP_003036742.1| hypothetical protein SCHCODRAFT_46550 [Schizophyllum commune H4-8]
gi|300110439|gb|EFJ01840.1| hypothetical protein SCHCODRAFT_46550 [Schizophyllum commune H4-8]
Length = 862
Score = 286 bits (731), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 199/606 (32%), Positives = 305/606 (50%), Gaps = 41/606 (6%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P G KEVP+GAP+ L GL FV +G L + R+EA +L KR GGRVTG S KT+Y++
Sbjct: 182 PSAPGSKEVPDGAPNALAGLAFVFTGELSAFSRDEAVELAKRFGGRVTGQPSGKTDYVVL 241
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRA-SKPMKALAQAESKKSVEKVAASLPKKSP 307
++ +K K+ G L ED ++ + +K K +++K +EK A
Sbjct: 242 GDNAGDSKLRAIKKHGLKTLNEDEFLALVGSRNKDGKMKVDEKTRKKMEKEQA------- 294
Query: 308 QNIEAKSTSAPKAPIERMKTVASPAKRKG----QNIQQSSLTWTEKYRPKTPNEIVGNQQ 363
+IE + + + A R + + S WT +Y P++ EI GN+
Sbjct: 295 -DIEKAAAELAALLVFFLGEKGDDADRVSCSGPKGVDPSMQLWTSRYAPQSLKEICGNKA 353
Query: 364 LVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423
V +L WL W+ L G K+ GK N + +A +++GSPG+GKTT+A L ++ GF
Sbjct: 354 GVDKLLQWLNDWSGS-LACGFKKPGK--NAMNTYRAVLITGSPGIGKTTSAHLCAKLAGF 410
Query: 424 QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN----MDRSKHPKTVLIMD 479
+E+NASD+R K + G+ +N K A++ + DRS LIMD
Sbjct: 411 TPVELNASDARSKK--LVENGMNINNTTIDKWYQGKGAVNTDGVTITDRS-----CLIMD 463
Query: 480 EVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIA 539
EVDGMSAGDRGG+ L A IK +KIPIICI NDR +QKL L C +L F+KP+ Q +
Sbjct: 464 EVDGMSAGDRGGVGALNALIKKTKIPIICIANDRNAQKLTPLKGTCFNLPFQKPQVQAVR 523
Query: 540 KRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSA 599
R++ IA E +++ +++L DIR +N + LS + I +D + + ++
Sbjct: 524 SRVLTIAFKEKMKIPANVVDQLIQGSQSDIRQVLNMMSTWKLSSNTIDFDQGKALVKANE 583
Query: 600 KDEDISPFTAVDKLFG---FNG-GKLRMDERIDLSMSDPDLVPLLIQENYINYRPS---- 651
K ++PF K+ G F+ + ++++++L D +PL IQENY+ P+
Sbjct: 584 KYAMMTPFDITHKILGPYMFSATARETLNDKMELYFQDFSFMPLFIQENYLKMSPARVRN 643
Query: 652 -SAGRDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQR 709
E+K + L+ RA+ ++SDGD+ + I Q W L ++ S + PA M
Sbjct: 644 LDGPEKEMKLMKLMERASMAVSDGDLVDALIHGPEQHWGLMPLHAVCSTVRPAYEM--YG 701
Query: 710 ETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLK 769
G N F WLG+NS K R L D+ K + +R Y L
Sbjct: 702 SGGGYGSPNQVSFPQWLGQNSKQNKLARQLSDVQIRM--RLKVSGDKPEIRQSYIPHLFP 759
Query: 770 QLTEPL 775
+ +PL
Sbjct: 760 HIVQPL 765
>gi|401623557|gb|EJS41653.1| rfc1p [Saccharomyces arboricola H-6]
Length = 861
Score = 285 bits (730), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 201/599 (33%), Positives = 307/599 (51%), Gaps = 53/599 (8%)
Query: 198 PEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKS 257
PEG P+CL GLT V +G L +LER +E L K++G RVT S+S +T+ ++ ++ K
Sbjct: 151 PEGKPNCLLGLTIVFTGVLPTLERGASEALAKKYGARVTKSISSRTSVVVLGDEAGPKKL 210
Query: 258 TKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSA 317
K K+L + E+G +I A P A+ ++ EK L ++ +I AK
Sbjct: 211 EKIKQLKVKAIDEEGFKKLI-AGMP----AEGGDGEAAEKARQKLEEQ--HHIAAKEAQL 263
Query: 318 -PKAPIERMKTVASPAKRKGQNIQQSSLT------WTEKYRPKTPNEIVGNQQLVKQLHT 370
+ ER K +A+ +K G ++++ L WT KY P ++ GN+ V +L
Sbjct: 264 LVEKEEERAKKLAA-SKVSGSHVKKDDLIREEDKLWTVKYAPTNLQQVCGNKGSVAKLTN 322
Query: 371 WLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
WLA+W D G KR GK + + +AA+L G PG+GKTT A LV + LG+ +E NA
Sbjct: 323 WLANWENAKRD-GFKRAGK--DGSGVFRAAMLYGPPGIGKTTTAHLVAKELGYDILEQNA 379
Query: 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT------VLIMDEVDGM 484
SD R K ++ G+ K ++N ++ S+ P+ V+IMDEVDGM
Sbjct: 380 SDVRSKT--LLNAGV--------KNALNNMSVVGYFKHSEEPQNLNGKHFVIIMDEVDGM 429
Query: 485 SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544
S GDRGG+ L + + P+I ICN+R K++ C D++FR+P I RLM
Sbjct: 430 SGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRTCLDIQFRRPDANSIKSRLMT 489
Query: 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDI 604
IA E +++ ++ L GDIR IN L +S + I +++I + K+ +
Sbjct: 490 IAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTIDHENINHISKAWEKNIAL 549
Query: 605 SPFTAVDKLFG------FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEV 658
PF K+ ++++I L D D PL+IQENY++ RPS +
Sbjct: 550 KPFDIAHKMLDGQIYSEIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPGQT 609
Query: 659 KRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGER 717
L +A AA IS GD+ +IR ++Q W L ++ S + PA+ + G G
Sbjct: 610 -HLEAVAEAANCISLGDMVERKIRSSEQLWSLLPLHAVLSSVYPASKVAGHM----AGRI 664
Query: 718 NFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
NF WLG+NS GK RLL+++H+H L++ K+G LRLDY K+L +P
Sbjct: 665 NFTT---WLGQNSKSGKYYRLLQEIHYHTRLSTSTDKIG---LRLDYLPTFRKRLLDPF 717
>gi|452988005|gb|EME87760.1| hypothetical protein MYCFIDRAFT_114532, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 1082
Score = 285 bits (729), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 205/618 (33%), Positives = 317/618 (51%), Gaps = 58/618 (9%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
E+P G +CL GLTFV +G L SL RE+ L+KR GG+VT + S KT+Y++ +D
Sbjct: 331 ELPTGNENCLAGLTFVFTGQLQSLGREQGAALVKRWGGKVTTAPSSKTSYVVLGDDAGPK 390
Query: 256 KSTKAKELGTPFLTEDGLFDMIR-----------ASKPMKALAQAES-----------KK 293
K K+ G + E+GLF +IR A K + +A+ E+ ++
Sbjct: 391 KLETIKKFGLKTINEEGLFALIRKLPANGGDGAAAEKYAEKMAKEEAHIREQAAEIDRQE 450
Query: 294 SVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPK 353
K S P +SP KS+S+ A ++ S K K + WT +Y P+
Sbjct: 451 KAAKARLSAPNQSP----VKSSSSKTAVQGNSASLKSADKGKSSVEGPDTRLWTVRYAPQ 506
Query: 354 TPNEIVGNQQLVKQLHTWLAHW--NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKT 411
+ +I GN+ V++L WL ++ N+K TG K G + + +A ++ G PG+GKT
Sbjct: 507 SLGQICGNKGAVEKLQRWLRNFPKNQK---TGFKLMGP--DGSGLHRAVMIHGPPGIGKT 561
Query: 412 TAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN-MDRSK 470
TAA LV ++ G+ +E NASD+R K + +G+ G S L+ A+ +D SK
Sbjct: 562 TAAHLVAKLEGYDIVESNASDTRSKK--LVEQGLKG--VLSTTSLMGYFGRGADDVDASK 617
Query: 471 HPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRF 530
K VLIMDEVDGMSAGDRGG+ L A K + IP+I ICNDR K+K DL F
Sbjct: 618 K-KLVLIMDEVDGMSAGDRGGVGALAAVCKKTMIPMILICNDRKLPKMKPFDFVTYDLPF 676
Query: 531 RKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDD 590
R+P I R+M IA EGL++ + L + DIR +N + L + Y++
Sbjct: 677 RRPTTDMIRSRIMTIAYREGLKMPPPVINALIEGSGADIRQVVNMISTAKLDSQNLSYEE 736
Query: 591 IRQRLLSSAKDEDISPFTAVDKLFG---FNGGKLR-MDERIDLSMSDPDLVPLLIQENYI 646
+ + K + P+ V K+ G +N ++++ +L +D + PL++QENY+
Sbjct: 737 SKDMSKAWEKHIVLKPWDMVGKILGPTIWNAASHSTLNDKQELYFNDHEFAPLMLQENYL 796
Query: 647 NYRPSSA------GRDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCI 699
A + + L L+++AAESISDGD+ + I QQW L + ++ S +
Sbjct: 797 GTNVQRAKKYVNPKKQHLATLDLVSKAAESISDGDLVDRMIHGSQQQWSLMPTHAMFSFV 856
Query: 700 IPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTL 759
PA+ ++G + RF WLGKNS GK +R ++++ H+ R S R +
Sbjct: 857 RPASFVNGSMAGHQ------TRFASWLGKNSNQGKLMRYVKEIQ-GHMRLRVS-ADRHEI 908
Query: 760 RLDYFSLLLKQLTEPLRV 777
R Y +L ++L + L+V
Sbjct: 909 RQTYMPILYEKLIKKLQV 926
>gi|150864993|ref|XP_001384033.2| hypothetical protein PICST_35815 [Scheffersomyces stipitis CBS
6054]
gi|149386249|gb|ABN66004.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 764
Score = 285 bits (729), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 202/607 (33%), Positives = 306/607 (50%), Gaps = 49/607 (8%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
++PE P+CL GLT V +G L L+R+ +E+L KR+G +VT S+S KT+ ++ ++ +
Sbjct: 43 QIPEAQPNCLSGLTIVFTGVLPRLDRDTSENLAKRYGAKVTKSISGKTSLVVIGDEAGPS 102
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPMK-----ALAQAESKKSVEKVAASLPKKSPQNI 310
K K K L + EDG +++ S PM+ A +A+ K+ E+ + +
Sbjct: 103 KIKKIKSLHIKAINEDGFIQLLQ-SMPMEGGDGAAAQKAKLKREEEERKIVEEAEEEERR 161
Query: 311 EAKSTSAPKAPIERMKTVASPAKRKGQN-----------IQQSSLTWTEKYRPKTPNEIV 359
+ + K +E K + Q+ I S WT KY P +++
Sbjct: 162 AQEEEARQKRLLEARKAASIEKASHSQSSHREPAEVPRIIPDSEKLWTVKYAPSRIDQLC 221
Query: 360 GNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASA-EKAAILSGSPGMGKTTAAKLVC 418
GN+ V++L WL++W D K D S +A ++SG PG+GKT+AA LV
Sbjct: 222 GNKGQVQKLQNWLSNW----FDNAKKDFKVPGRDGSGIYRACLISGPPGIGKTSAAHLVA 277
Query: 419 QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRS-KHPKT--- 474
+ LGF +E NASD R SK + SN S+ S + D + +H +
Sbjct: 278 KSLGFDILEKNASDVR-------SKSLLNSNLKSVLTNTSVVGFFKHRDENIQHTQNDRR 330
Query: 475 -VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKP 533
LIMDEVDGMS+GD GG L A KI+ +P+I ICND+ K+++ DL FR+P
Sbjct: 331 FCLIMDEVDGMSSGDHGGAGALSAFCKITHMPMILICNDKSLPKMRTFDRVTLDLPFRRP 390
Query: 534 RKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQ 593
+ E+ RLM IA E ++++ + +L DIR IN L +S + S I + +
Sbjct: 391 SEAEMKSRLMSIALREKIKLDPTVIGQLVQATGNDIRQIINLLSTVSKTQSSIGGEQAKD 450
Query: 594 RLLSSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINYR 649
S K + PF +L K ++++IDL +D D PL+IQENY++ R
Sbjct: 451 AANSWKKQTVLKPFDITARLLNAQIYSPNAKHSLNDKIDLYFNDIDFAPLMIQENYLSTR 510
Query: 650 PSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRN-QQWQLSQSSSLASCIIPAALMHGQ 708
PS A R L +A AA+ IS+ D N IR + QQW L + S + P++ + GQ
Sbjct: 511 PSDA-RTPQDHLRRVANAADDISESDRINSLIRSSEQQWSLLPFHGVMSSVKPSSQVAGQ 569
Query: 709 RETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLL 768
+ N F GWLG+NS K R+L+DL +H ++ + LRLDY L
Sbjct: 570 I------SQRIN-FAGWLGQNSKAMKYQRMLQDLQYH--TRLRTSTDKKELRLDYLPTLR 620
Query: 769 KQLTEPL 775
++LTEPL
Sbjct: 621 QRLTEPL 627
>gi|296812349|ref|XP_002846512.1| replication factor C subunit 1 [Arthroderma otae CBS 113480]
gi|238841768|gb|EEQ31430.1| replication factor C subunit 1 [Arthroderma otae CBS 113480]
Length = 1056
Score = 285 bits (729), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 188/569 (33%), Positives = 300/569 (52%), Gaps = 38/569 (6%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
++P G P+CL GL+FV +G LDSL RE+ ++L+K++GG+ + S KT+Y++ D
Sbjct: 307 DLPTGEPNCLAGLSFVFTGVLDSLGREQGQNLVKKYGGKSMTAPSSKTSYVVLGNDAGPK 366
Query: 256 KSTKAKELGTPFLTEDGLFDMIR-----ASKPMKALAQAESKKSVEKVAASLPKKSPQNI 310
K K+ + E+GLF++IR AL AE KK+ E+ + + +
Sbjct: 367 KLETIKKYKLKTINEEGLFELIRKLPANGGDGKAALQYAEKKKAEEQKIKEMAAEIDREE 426
Query: 311 EAKSTSAPKAP-IERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLH 369
+ ++ S P+AP + ++ + K + I WT KY P + + I GN+ V++L
Sbjct: 427 KKRAASKPQAPSVSDTESKSKATGDKSEGIDDR--LWTTKYAPTSLSMICGNKGTVEKLQ 484
Query: 370 TWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429
TWL +W+ G K+ GK + + + ++ G PG+GKTTAA LV ++ F +E N
Sbjct: 485 TWLRNWHAN-ARAGFKKPGK--DGSGTYRTVMIHGPPGIGKTTAAHLVAKLENFDIVETN 541
Query: 430 ASDSRGKADAKIS-KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD 488
ASD+R K + + +G+ + S++ S E + VLIMDEVDGMSAGD
Sbjct: 542 ASDTRSKKLLETTLRGV--LDTTSLQGYFSGEGKKVEPGKKN---LVLIMDEVDGMSAGD 596
Query: 489 RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
RGG+ + A K ++IPII ICN+R K+K + +L FR+P ++I RL I
Sbjct: 597 RGGVGAVAAIAKKTRIPIILICNERRLPKMKPFDHVTFELPFRRPTAEQIRARLFTICYR 656
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFT 608
EG+++ L+ L + + DIR IN L + LS + + YD ++ + K + P+
Sbjct: 657 EGIKIPPQVLDGLIEGTHADIRQVINMLSTIKLSANNLDYDQGKEMSKAWEKHVILKPWD 716
Query: 609 AVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSA----GRD-EVK 659
V K+ K ++E+I+L +D + L++QENY+ P +A G++ + K
Sbjct: 717 IVGKILSAQMFAASSKTTLNEKIELYFNDHEFSFLMLQENYLKTNPMAANSYSGKERQYK 776
Query: 660 RLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERN 718
L L +AAESISDGD+ + I QQW L + + S + PA+ M G
Sbjct: 777 LLELADKAAESISDGDLVDRMIHGSQQQWSLMPTHAAFSFVRPASFMAGNM--------- 827
Query: 719 FNR--FGGWLGKNSTMGKNLRLLEDLHFH 745
+R F WLG NS GK R ++++ H
Sbjct: 828 MDRVGFTSWLGNNSKQGKMARQIKEIQGH 856
>gi|407917716|gb|EKG11020.1| BRCT domain-containing protein [Macrophomina phaseolina MS6]
Length = 1072
Score = 285 bits (728), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 204/613 (33%), Positives = 311/613 (50%), Gaps = 47/613 (7%)
Query: 190 PHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCD 249
P G E+PEG P+CL GLTFV +G L L+RE + L+KR+GG+VT S S KT+Y++
Sbjct: 324 PRSGSVEIPEGEPNCLAGLTFVFTGLLQYLDREAGQQLVKRYGGKVTTSPSSKTSYVVLG 383
Query: 250 EDIAGAKSTKAKELGTPFLTEDGLFDMIR----------ASKPMKALAQAESKKSVEKVA 299
D +K K K+ + E+GLF +I+ A++ + AE+KK E
Sbjct: 384 SDAGPSKLQKIKQFNLRTINEEGLFALIKKLPANGGDSKAAEAFEKKQAAEAKKIKEMAE 443
Query: 300 ASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQ--SSLTWTEKYRPKTPNE 357
++ + AP + A + + N S WT KY P +
Sbjct: 444 EMEKEERRAGGAGGAGDGKAAPASASSSQAQGSASQSTNADSGPDSRLWTVKYAPTQLAQ 503
Query: 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE---KAAILSGSPGMGKTTAA 414
I GN+ V++L WL ++ + ++R G K +A ++ G PG+GKTTAA
Sbjct: 504 ICGNKGQVEKLQRWLRNFPK------SQRKGFKLGGVDGSGLFRAVMIHGPPGIGKTTAA 557
Query: 415 KLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474
LV ++ G+ +E NASD+R K + +G+ G + L+ A K
Sbjct: 558 HLVAKLEGYDIVESNASDTRSKK--LVQEGLQGVLETT--SLLGYFAGDGKKVEESRKKL 613
Query: 475 VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPR 534
VLIMDEVDGMSAGDRGG+ L A K S+IP+I ICNDR K+K DL FR+P
Sbjct: 614 VLIMDEVDGMSAGDRGGVGALAAVCKKSQIPMILICNDRRLPKMKPFDYVTYDLPFRRPT 673
Query: 535 KQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQR 594
+I R+M IA EGL++ + ++ L + N DIR +N + L + +D R +
Sbjct: 674 TDQIRSRIMTIAYREGLKMPKNVVDALIEGTNADIRQVVNMVSTAKLDEEAMDFD--RSK 731
Query: 595 LLSSAKDEDI--SPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINY 648
+S A ++ I P+ V K+ + K ++++ +L +D +L L++QENY+
Sbjct: 732 SMSKAWEKHIILKPWDIVGKILQGHMFSETSKHSLNDKTELYFNDHELSYLMLQENYLGT 791
Query: 649 RPSSA----GRD-EVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPA 702
P A G+D +K L L+ AAESISDGD+ + I QQW L + ++ S + PA
Sbjct: 792 NPIRAANYQGKDRNLKLLELVDNAAESISDGDLVDRMIHGSQQQWSLMPTHAIFSFVRPA 851
Query: 703 ALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLD 762
+ + G + F WLGKNST GK R+++++ H+ R S R +R
Sbjct: 852 SFVAGSMAGFK------TNFPQWLGKNSTQGKLTRMVKEIQ-GHMRLRTSG-DRHEIRQQ 903
Query: 763 YFSLLLKQLTEPL 775
Y +L ++L + L
Sbjct: 904 YIPILWQELVKKL 916
>gi|448512259|ref|XP_003866703.1| Rfc1 protein [Candida orthopsilosis Co 90-125]
gi|380351041|emb|CCG21264.1| Rfc1 protein [Candida orthopsilosis Co 90-125]
Length = 854
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 200/617 (32%), Positives = 306/617 (49%), Gaps = 79/617 (12%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
++P P+CL GLT V +G + SL+R AE +++G +VT S+SKKT+ ++ D +
Sbjct: 146 DLPAAQPNCLTGLTIVFTGQMPSLDRNTAESTAQQYGAKVTKSISKKTSLVVIGSDAGPS 205
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPM-----KALAQAESKKSVEK------------- 297
K K KE + E G ++ +S P +A +A+ K+ E+
Sbjct: 206 KVKKIKEFKIKAIDEAGFIQLL-SSMPADGGSGEAAVKAKEKREQEERKIIEEAERAEKE 264
Query: 298 -------VAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKY 350
+ QN+ + P A T PAK + WT+K+
Sbjct: 265 EREEEERKRRRAQTTASQNVSNGTPQMPPA------TKDVPAKDR---------LWTDKH 309
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
PK N++ GN+ V++L WL HW F + +G +N S +AA++SG PG+GK
Sbjct: 310 APKDFNQLCGNKGQVQKLRNWLEHW---FENKARNFSGGPENPGSY-RAALISGPPGIGK 365
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDR-- 468
TTAA +V LGF +E NASD R K+ NAN IK ++SN ++
Sbjct: 366 TTAAHMVANSLGFDVLEKNASDVRSKSLL---------NAN-IKSVLSNTSVIGFFKHRD 415
Query: 469 -----SKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
S K LIMDEVDGMS+GD GG L +I+ +P+I ICND+ K+++
Sbjct: 416 DEHQSSNSKKLCLIMDEVDGMSSGDHGGAGALSQFCRITNMPMILICNDKSLPKMRTFDR 475
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
DL FR+P + E+ RLM IA EG++++ + +L + DIR IN L +S +
Sbjct: 476 VTYDLPFRRPTENEVKSRLMTIALREGIKLDPNIIGQLVQATSNDIRQMINLLSTVSKTQ 535
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG---FNGGKLRMDERIDLSMSDPDLVPLL 640
+I ++++ S K + PF +L ++G ++E++DL +D D PL+
Sbjct: 536 KLIGTNNVKDIQASWKKQIILKPFDIAGRLLSSGLWSGPNQNLNEKLDLYFNDIDFAPLM 595
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRN-QQWQLSQSSSLASCI 699
IQENY+N RP G + +A+AA+ IS D N IR + QQW L L S +
Sbjct: 596 IQENYLNTRPRLPG----SHIKHVAQAADDISLSDSINSLIRSSEQQWSLLPFHGLMSTV 651
Query: 700 IPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTL 759
P+ + GQ G NF+ WLG+NS K R+L++L +H K+ + L
Sbjct: 652 KPSYEVAGQVT----GRLNFS---AWLGQNSKQMKYQRMLQELQYHTRV--KTSTTKQEL 702
Query: 760 RLDYFSLLLKQLTEPLR 776
RLDY + L +L P++
Sbjct: 703 RLDYLNPLWIKLNIPIK 719
>gi|410081562|ref|XP_003958360.1| hypothetical protein KAFR_0G01910 [Kazachstania africana CBS 2517]
gi|372464948|emb|CCF59225.1| hypothetical protein KAFR_0G01910 [Kazachstania africana CBS 2517]
Length = 861
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 196/595 (32%), Positives = 299/595 (50%), Gaps = 41/595 (6%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
+ PEGA +CL GLT V +G L +LER E + KR+G +VT S+S +T+ ++ +D
Sbjct: 150 DFPEGASNCLLGLTIVFTGVLPNLERGAVEAVAKRYGAKVTKSISSRTSVVVLGDDAGPK 209
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSP-------- 307
K K K+L + EDG F + + P + ++K+ +K K
Sbjct: 210 KLEKIKQLKIKAIDEDG-FKQLISGMPEEGGEGEAAEKARKKREEEEAKALKEAQDLIKQ 268
Query: 308 QNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQ 367
+NI ++ S + E +K I+ WT KY P N++ GN+ + +
Sbjct: 269 ENIRKQTMSMAQKSGEYIKN--------EDKIRDEDKLWTVKYAPTNLNQMCGNKSSILK 320
Query: 368 LHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
L WL +WN +G K G+ + + ++A+L G PG+GKTTAA L+ + LG+ +E
Sbjct: 321 LKNWLLNWNMN-KKSGFKNPGR--DGSGVFRSAMLYGPPGIGKTTAAHLIAKELGYDILE 377
Query: 428 VNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG 487
NASD R K+ G NA ++ ++ S V+IMDEVDGMS G
Sbjct: 378 QNASDVRSKSLL----NAGVKNALDNMSVIGYFKHKDEIEESNGKNFVVIMDEVDGMSGG 433
Query: 488 DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
DRGG+ L + + P+I ICN+R K++ C DL+FR+P I RLM IA
Sbjct: 434 DRGGVGQLAQFCRKTSTPMILICNERNLPKMRPFDRTCLDLQFRRPDANSIKSRLMTIAI 493
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPF 607
EG +++ ++ L GDIR IN L +S + I +++I+Q S K+ + PF
Sbjct: 494 REGFKLDPNVIDRLVQATRGDIRQIINLLSTISTTTKSINHENIKQISDSWQKNIALKPF 553
Query: 608 TAVDKLFG---FN---GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRL 661
KL +N ++++I L D D PL+IQENYIN +P + E L
Sbjct: 554 DITHKLLDGHIYNEVGSNTFTLNDKIALYFDDLDFTPLMIQENYINSKPGNLSPGET-HL 612
Query: 662 SLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERNFN 720
+A AA+SIS GD+ +IR +Q W L ++ S + PA+ + G G NF
Sbjct: 613 QAVAEAADSISQGDLVERKIRSAEQLWSLLPLHAVLSSVRPASKVAGHM----TGRINFT 668
Query: 721 RFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
WLG+NS K RLL++L +H ++ + +LRL+Y +L K+L PL
Sbjct: 669 T---WLGQNSKTNKYYRLLQELQYH--TKLRTSADKASLRLEYLPILKKRLLSPL 718
>gi|354546576|emb|CCE43308.1| hypothetical protein CPAR2_209530 [Candida parapsilosis]
Length = 850
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 193/617 (31%), Positives = 314/617 (50%), Gaps = 37/617 (5%)
Query: 175 GGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGR 234
G + F +++ ++P P+CL GLT V +G + SL+R AE +++G +
Sbjct: 123 GEKPNFFALKAQQNATTSTSVDLPAAQPNCLTGLTIVFTGQMPSLDRNTAESTAQQYGAK 182
Query: 235 VTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA------SKPMKALAQ 288
VT S+SKKT+ ++ D +K K +E + EDG ++ + S + A+
Sbjct: 183 VTKSISKKTSLVVIGSDAGPSKVKKIREFKIKAIDEDGFIQLLSSMPADGGSGEVALKAK 242
Query: 289 AESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVA---SPAKRKGQNIQQSSLT 345
+ ++ +K+ + + + + A KA + V+ S + Q +
Sbjct: 243 EKREQEEKKIIEDAERDEREERKEEQKRAKKAQEIANRNVSGGTSQSPPVTQEVPAKDKL 302
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WT+K+ PK N++ GN+ V++L +WL HW + K ++ S+ +AA++SG
Sbjct: 303 WTDKHAPKDFNQLCGNKGQVQKLRSWLEHW----FENKAKNFPGGSDNPSSYRAALISGP 358
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA--DAKISKGIGGSNANSIKELVSNEALS 463
PG+GKTTAA LV LGF +E NASD R K+ +A I + ++ + +E S
Sbjct: 359 PGIGKTTAAHLVANSLGFDVLEKNASDVRSKSLLNANIKSVLNNTSVIGFFKHRDDEQQS 418
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
+N K LIMDEVDGMS+GD GG L +I+ +P+I ICND+ K+++
Sbjct: 419 SNSR-----KICLIMDEVDGMSSGDHGGAGALSQFCRITNMPMILICNDKSLPKMRTFDR 473
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
DL FR+P + E+ RLM IA EG++++ + +L + DIR IN L +S +
Sbjct: 474 VTYDLPFRRPTENEVKSRLMTIALREGIKLDPNIIGQLVQATSNDIRQMINLLSTVSKTQ 533
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG---FNGGKLRMDERIDLSMSDPDLVPLL 640
+I +++++ S K + PF +L + G + + E++DL +D D PL+
Sbjct: 534 KLIGTNNVKEIQASWKKQIILKPFDIAGRLLSSGIWTGPRQNLTEKLDLYFNDIDFAPLM 593
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRN-QQWQLSQSSSLASCI 699
IQENY+N RP G + +A+AA+ IS D N IR + QQW L L S +
Sbjct: 594 IQENYLNTRPRLPG----PHIQHVAQAADDISISDSINSLIRSSEQQWSLLPFHGLMSTV 649
Query: 700 IPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTL 759
P+ + GQ G NF+ WLG+NS K R+L++L +H K+ + L
Sbjct: 650 KPSYEVAGQVT----GRLNFS---AWLGQNSKQMKFQRMLQELQYH--TRVKTSTTKQEL 700
Query: 760 RLDYFSLLLKQLTEPLR 776
RLDY + L +L P++
Sbjct: 701 RLDYLNPLWVKLNIPIK 717
>gi|6324791|ref|NP_014860.1| replication factor C subunit 1 [Saccharomyces cerevisiae S288c]
gi|584899|sp|P38630.1|RFC1_YEAST RecName: Full=Replication factor C subunit 1; Short=Replication
factor C1; AltName: Full=Activator 1 95 kDa subunit;
AltName: Full=Cell division control protein 44
gi|437274|gb|AAC48916.1| Cdc44p [Saccharomyces cerevisiae]
gi|841462|gb|AAC49060.1| Rfc1p [Saccharomyces cerevisiae]
gi|1050769|emb|CAA63180.1| CDC44 [Saccharomyces cerevisiae]
gi|1420505|emb|CAA99434.1| RFC1 [Saccharomyces cerevisiae]
gi|256269587|gb|EEU04869.1| Rfc1p [Saccharomyces cerevisiae JAY291]
gi|259149697|emb|CAY86501.1| Rfc1p [Saccharomyces cerevisiae EC1118]
gi|285815096|tpg|DAA10989.1| TPA: replication factor C subunit 1 [Saccharomyces cerevisiae
S288c]
gi|392296545|gb|EIW07647.1| Rfc1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 861
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 203/598 (33%), Positives = 307/598 (51%), Gaps = 51/598 (8%)
Query: 198 PEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKS 257
PEG P+CL GLT V +G L +LER +E L KR+G RVT S+S KT+ ++ ++ K
Sbjct: 151 PEGKPNCLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVLGDEAGPKKL 210
Query: 258 TKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSA 317
K K+L + E+G F + A P A+ ++ EK L ++ NI K
Sbjct: 211 EKIKQLKIKAIDEEG-FKQLIAGMP----AEGGDGEAAEKARRKLEEQ--HNIATKEAEL 263
Query: 318 -PKAPIERMKTVASPAKRKGQNIQQSSLT------WTEKYRPKTPNEIVGNQQLVKQLHT 370
K ER K +A+ + G ++++ ++ WT KY P ++ GN+ V +L
Sbjct: 264 LVKKEEERSKKLAA-TRVSGGHLERDNVVREEDKLWTVKYAPTNLQQVCGNKGSVMKLKN 322
Query: 371 WLAHWNEKFLDTGTKRNGKKQ---NDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
WLA+W +K+N K + + +AA+L G PG+GKTTAA LV Q LG+ +E
Sbjct: 323 WLANWE------NSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE 376
Query: 428 VNASDSRGKADAKISKGIGGS--NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS 485
NASD R K ++ G+ + N + + NE + N++ KH V+IMDEVDGMS
Sbjct: 377 QNASDVRSKT--LLNAGVKNALDNMSVVGYFKHNEE-AQNLN-GKH--FVIIMDEVDGMS 430
Query: 486 AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQI 545
GDRGG+ L + + P+I ICN+R K++ C D++FR+P I RLM I
Sbjct: 431 GGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTI 490
Query: 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDIS 605
A E +++ ++ L GDIR IN L +S + I +++I + + K+ +
Sbjct: 491 AIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIALK 550
Query: 606 PFTAVDKLF------GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
PF K+ ++++I L D D PL+IQENY++ RPS +
Sbjct: 551 PFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPGQ-S 609
Query: 660 RLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERN 718
L +A AA IS GDI +IR ++Q W L ++ S + PA+ + G G N
Sbjct: 610 HLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAGHM----AGRIN 665
Query: 719 FNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F WLG+NS K RLL+++H+H L + K+G LRLDY K+L +P
Sbjct: 666 FT---AWLGQNSKSAKYYRLLQEIHYHTRLGTSTDKIG---LRLDYLPTFRKRLLDPF 717
>gi|448091665|ref|XP_004197386.1| Piso0_004638 [Millerozyma farinosa CBS 7064]
gi|448096237|ref|XP_004198417.1| Piso0_004638 [Millerozyma farinosa CBS 7064]
gi|359378808|emb|CCE85067.1| Piso0_004638 [Millerozyma farinosa CBS 7064]
gi|359379839|emb|CCE84036.1| Piso0_004638 [Millerozyma farinosa CBS 7064]
Length = 812
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 202/618 (32%), Positives = 319/618 (51%), Gaps = 52/618 (8%)
Query: 180 FMNFGERKDP---PHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVT 236
+ F +RK+ P G +VPE P+CL GLT + +G L +L+R +AE+L K++G +VT
Sbjct: 90 YQFFQKRKEDGPVPSGGVADVPEAKPNCLSGLTIIFTGVLPNLDRNDAENLAKQYGAKVT 149
Query: 237 GSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMK-----ALAQAES 291
S+S KT+ ++ ED +K K K+ + E G ++R S P + A +A+
Sbjct: 150 KSISGKTSLVVIGEDAGPSKVEKIKKFKIKAIDESGFLTLLR-SMPSEGGSGDAAIKAKQ 208
Query: 292 KKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYR 351
K+ +E+ + + A + ++ + +PA+ I S WT KY
Sbjct: 209 KRELEEQKILEEAREEERKLASESQRKQSQASSSTSSEAPARV----IPDSEKLWTVKYA 264
Query: 352 PKTPNEIVGNQQLVKQLHTWLAHW----NEKFLDTGTKRNGKKQNDASAEKAAILSGSPG 407
PK N++ GN+ V +L WL W F + G+ +G +A ++SG PG
Sbjct: 265 PKDMNQLCGNKGQVNKLKLWLERWFDNAKHNFKNPGSDGSG-------IYRACLISGPPG 317
Query: 408 MGKTTAAKLVCQMLGFQAIEVNASDSRGKA--DAKISKGIGGSNANSIKELVSNEALSAN 465
+GKT+AA LV + LG +E NASD R K+ ++ + + ++ + + + S N
Sbjct: 318 IGKTSAAHLVARSLGLDVLEKNASDVRSKSLLNSTLKSALDNTSVVGFFKHQHDASHSEN 377
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
R LIMDEVDGMS+GD GG L + KI+K+P+I ICND+ K+++
Sbjct: 378 DKR-----FCLIMDEVDGMSSGDHGGTGTLSSYCKITKMPLILICNDKSLPKMRTFDRVT 432
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV 585
DL FR+P + E+ RLM IA+ E ++++ + +L + DIR IN L +S +
Sbjct: 433 YDLPFRRPSEVEVKARLMTIAHREKIKLDPTVIGQLVQATSNDIRQMINLLSTVSRTQKN 492
Query: 586 IKYDDIRQRLLSSAKDEDISPFTAVDKLFGF-----NGGKLRMDERIDLSMSDPDLVPLL 640
I + + ++ S K + PF + F N G ++++IDL +D D PL+
Sbjct: 493 IGHKESKEFSASWQKHTILKPFDITARFFSAQTYNPNSGS-SLNDKIDLYFNDIDFTPLM 551
Query: 641 IQENYINYRPSSAG--RDEVKRLSLIARAAESISDGDIFNVQIRRN-QQWQLSQSSSLAS 697
IQENY+ RP+ A +D ++R +A AA+ IS D N IR + QQW L + S
Sbjct: 552 IQENYLYTRPAGASSPKDHLRR---VAEAADDISKSDHINSLIRSSEQQWSLLPFHGVMS 608
Query: 698 CIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRD 757
+ P + + G ++ Q N F GWLG+NS K RLL+++ +H K+ +
Sbjct: 609 SVRPCSKVAG---SITQ---RIN-FAGWLGQNSKSLKYQRLLQEIQYH--TRLKTSTDKA 659
Query: 758 TLRLDYFSLLLKQLTEPL 775
LRLDY LL K+LT PL
Sbjct: 660 QLRLDYLPLLTKKLTTPL 677
>gi|336363951|gb|EGN92318.1| hypothetical protein SERLA73DRAFT_79676 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385927|gb|EGO27073.1| hypothetical protein SERLADRAFT_434847 [Serpula lacrymans var.
lacrymans S7.9]
Length = 978
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 207/607 (34%), Positives = 314/607 (51%), Gaps = 41/607 (6%)
Query: 189 PPHKGEKEVPEG-APDCLGGLTFVISGTLDSLEREEAEDLIKRHGG---RVTGSVSKKTN 244
P G KEVPE + DCL GL+FV +G L S R+EA DL KR GG RVTG S KT+
Sbjct: 257 PVAHGSKEVPEPKSMDCLAGLSFVFTGELSSFSRDEAVDLAKRFGGQVSRVTGQPSSKTS 316
Query: 245 YLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASK----PMKALAQAESKKSVEKVAA 300
+++ ++ +K + K+ G L+ED ++I + P + E K +
Sbjct: 317 FVILGDNAGPSKLSAIKKHGLKSLSEDEFLNLIATREGPGGP-NGVGYDEKTKKKMEKEQ 375
Query: 301 SLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKG--QNIQQSSLTWTEKYRPKTPNEI 358
+ +K+ + +E + A K + +K G + + SS WT KY P++ EI
Sbjct: 376 DVIRKAAKELENREKQAMK----------NDSKHSGGSKPVDVSSQLWTTKYAPQSLKEI 425
Query: 359 VGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVC 418
GN+ V++L WL W+ L +G K+ GK N + +A +++GSPG+GKTT+A L
Sbjct: 426 CGNKGQVEKLQLWLHDWSNN-LKSGFKKPGK--NGMNIFRAVMVTGSPGIGKTTSAHLCA 482
Query: 419 QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478
++ GF IE+NASD+R K + G+ +N + + N +++A + + KT LIM
Sbjct: 483 KLEGFTPIELNASDARSKK--LVESGMNINNTSLDGWMGGNSSINA-VGVAITDKTCLIM 539
Query: 479 DEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEI 538
DEVDGMSAGDRGG+ L A IK SKIPIICI NDR +QKLK L+ +L FRKP +
Sbjct: 540 DEVDGMSAGDRGGVGALNALIKKSKIPIICIANDRNAQKLKPLLATTFNLPFRKPEATAV 599
Query: 539 AKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSS 598
R++ IA E +++ +++L DIR +N L LS + +D+ + ++
Sbjct: 600 RSRMLTIAFKEKMKLPANVIDQLITGAQSDIRQVLNMLSTWKLSSDTMSFDEGKDLAKTN 659
Query: 599 AKDEDISPFTAVDKLFG---FNG-GKLRMDERIDLSMSDPDLVPLLIQENYINYRP---- 650
K ++PF K+ G F+ + + ++++L D VPL IQENY+ +P
Sbjct: 660 EKYTILTPFDVTYKMLGPYMFSSTSRETLGDKMELYFHDHSFVPLFIQENYLKTQPARLR 719
Query: 651 SSAGRDEV-KRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQ 708
S G +V K+L L+ +AA SISD D+ + I Q W L ++ S + PA+ +
Sbjct: 720 SLEGPQKVLKQLELMDKAASSISDADLVDALIHGPEQHWSLMPLHAVCSTVRPASFL--Y 777
Query: 709 RETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLL 768
G N F WLG+NS K R L D+ K + +R Y L
Sbjct: 778 GAGGGYGGPNAMSFPQWLGQNSKQNKLNRQLGDVQIR--MRLKVSGDKAEIRQSYLPALF 835
Query: 769 KQLTEPL 775
+ +PL
Sbjct: 836 PHIVKPL 842
>gi|358386822|gb|EHK24417.1| hypothetical protein TRIVIDRAFT_168290 [Trichoderma virens Gv29-8]
Length = 1045
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 197/606 (32%), Positives = 308/606 (50%), Gaps = 50/606 (8%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
E+PEG +CL GLTFV +G L ++ R+EA+ L+KR+GG+VTG S KT++++ D +
Sbjct: 306 ELPEGEEECLSGLTFVFTGVLQTIGRDEAQALVKRYGGKVTGQPSSKTSFVVLGGDAGPS 365
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV---------AASLPKKS 306
K K K G + E+GLFD+IR + K +K A + +
Sbjct: 366 KLAKIKANGIKTIDENGLFDLIRKLPAFGGTGKGAQKAQEKKKAEEEKVKKQVAEMEAEE 425
Query: 307 PQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVK 366
+A K R T ++PA + + + T KY P N I GN+ V+
Sbjct: 426 KAKKLEAEKAAKKLAASRGPTSSAPA----EPARAPDVLLTSKYAPTQLNHICGNKAQVE 481
Query: 367 QLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426
++ WL +W K +R G + E+A I+SG PG+GKTTAA L ++ G+ +
Sbjct: 482 KIQNWLRNW-PKSKKYNFQRRG--ADGMGGERAIIISGPPGIGKTTAAHLAAKLEGYDVL 538
Query: 427 EVNASDSRGK--ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGM 484
E NASD+R K +A +S + N S+ + + S + + K VLIMDEVDGM
Sbjct: 539 ESNASDTRSKKLVEAGVSDVM---NNTSLLGFFAGDGKSVDATKKK---IVLIMDEVDGM 592
Query: 485 SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544
SAGDRGG+ L + +++P+I ICN+R K+K + D+RF +P ++ R+M
Sbjct: 593 SAGDRGGVGALAKFCRKTEVPLILICNERKLPKMKPFDHAAFDIRFNRPTVDQVRSRIMT 652
Query: 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDI 604
I + EGL++ ++ L + N DIR IN + L S + +D + + K +
Sbjct: 653 ICHREGLKLPPPVVDALIEGSNKDIRQIINMISTAKLDQSSMSFDQTKAMSKAWEKHVVL 712
Query: 605 SPFTAVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLLIQENYINYRPSS------ 652
P+ K+ G GG K ++++I+L +D + L+IQENY+ +P +
Sbjct: 713 KPWDICQKMLG--GGLFAPASKATLNDKIELYFNDHEFSFLMIQENYLRTKPMAMSGSGY 770
Query: 653 AGRD-EVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRE 710
+GR+ +K L L +AAESISDGD+ + I QQ W L + ++ S + PA+ + GQ
Sbjct: 771 SGREATLKALELFDQAAESISDGDLVDRMIHGPQQHWSLMPTHAVFSTVRPASFIAGQLM 830
Query: 711 TLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQ 770
+ F WLG NS GK R + ++H H KS + +R +Y LL Q
Sbjct: 831 G--------SNFTSWLGNNSKAGKLGRYIREIHSH--MRLKSSGDHNEVRQEYLPLLWSQ 880
Query: 771 LTEPLR 776
+ L+
Sbjct: 881 TVDRLQ 886
>gi|391868818|gb|EIT78027.1| replication factor C, subunit RFC1 [Aspergillus oryzae 3.042]
Length = 1078
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 227/730 (31%), Positives = 350/730 (47%), Gaps = 76/730 (10%)
Query: 99 DDDDFVPPSVKKNSVGATPSKKLKSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGR 158
DDDD V K AT S + G R + DD+ +E KK SP K+S R
Sbjct: 214 DDDDVVMEDAPKQPKRATKSAASQPGRKRKSEALGKEEDDEPQEGPKKVTSPSKASSTAR 273
Query: 159 GGRGAS-------------------GAPAV----GRGRGGGRGGFMNFGERKDPPHK-GE 194
+ P V G + F F R P G
Sbjct: 274 APKKPKGSPSKKDQPESKEIQSIFDSIPTVRPPSPPPESGDKKKFNPFAARARSPAAAGT 333
Query: 195 KEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAG 254
E+P GA +CL GL+FV +G LD+L REE ++L+K++GG+VTG+ S KT+Y++ D
Sbjct: 334 AEIPVGAENCLAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTGAPSSKTSYVVLGGDAGP 393
Query: 255 AKSTKAKELGTPFLTEDGLFDMIR----------ASKPMKALAQAESKKSVEKVAASLPK 304
K ++ + E+GLF++IR A++ + +AE KK + +AA + +
Sbjct: 394 KKLKTIRDHNLKTINEEGLFELIRRLPANGGDGKAAEKYEEKRKAEDKK-IRAMAAEIEQ 452
Query: 305 KSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL 364
E K + + + S A Q+ + WT KY P + N I GN+
Sbjct: 453 ------EEKRKAKATSTAAAKASAGSQAPSSSQSPRPEDELWTTKYAPTSMNMICGNKTA 506
Query: 365 VKQLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422
V++L +WL W++ K N K ++ +A ++ G PG+GKTTAA LV ++ G
Sbjct: 507 VEKLQSWLRDWHK-----NAKGNFSKPGKDGTGIYRAVMIHGPPGIGKTTAAHLVAKLEG 561
Query: 423 FQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRSKHPKTVLIMDEV 481
+ +E NASD+R K + G+ G + S++ + + + ++ VLIMDEV
Sbjct: 562 YDIVETNASDTRSKK--LVETGLLGVLDTTSLQGYFAADGQKVHREKKN---MVLIMDEV 616
Query: 482 DGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
DGMSAGDRGG+ L A K + IP+I ICN+R K+K + +L FR+P ++I R
Sbjct: 617 DGMSAGDRGGVGALAAIAKKTHIPLILICNERRLPKMKPFDHVTYELPFRRPTAEQIRAR 676
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD 601
L I EGL++ L+ L + + DIR IN L + L + ++ R+ + K
Sbjct: 677 LSTICFREGLKIPPPVLDSLIEGTHADIRQIINMLSTVKLDQQNLDFEKGREMSKAWEKH 736
Query: 602 EDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAG--- 654
+ P+ V K+ K ++++I+L +D + L++QENY+ RP+ +G
Sbjct: 737 VILKPWDIVSKILSAQMFSPSSKATLNDKIELYFNDHEFSYLMLQENYLRTRPALSGNYQ 796
Query: 655 --RDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRET 711
++K L L AA SISDGD+ + I QQW L + ++ S + PA+ +G T
Sbjct: 797 GKEQKLKLLELADNAASSISDGDLVDRMIHGTQQQWSLMPTHAVFSFVRPASFAYGNM-T 855
Query: 712 LEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQL 771
G F WLG+NS GK R ++ H+ R S RD +R Y L+ +L
Sbjct: 856 ERAG------FTSWLGQNSKQGKLWRCTREIQ-GHMRLRASG-DRDEIRQQYLPLIWDKL 907
Query: 772 TEPLRVLPKD 781
+R L KD
Sbjct: 908 ---VRRLMKD 914
>gi|388582052|gb|EIM22358.1| DNA replication factor C, large subunit [Wallemia sebi CBS 633.66]
Length = 753
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 192/612 (31%), Positives = 307/612 (50%), Gaps = 39/612 (6%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ ++ +R P + G KE+P+G+P+CL GLT V +G LD++ R+ A + KR+G +VT +
Sbjct: 14 YKDYLQRTGPENLGSKEIPQGSPNCLNGLTLVFTGELDNIGRDSAVEAAKRYGAKVTAAP 73
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASK---PMKALAQAESKKSVE 296
S +T+Y++ + K KE G L E+G +I S +L++ + ++
Sbjct: 74 SGRTSYVILGREPGPKKLQIIKEKGLKTLDENGFCQLIANSNGDLNSNSLSKLKKEEEKI 133
Query: 297 KVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPN 356
K A ++ Q+ ++ S KA + ++ SP +S WT KY P
Sbjct: 134 KKDAKELERIEQDKSSQLKSTSKALLITFRSSISP----------NSQLWTVKYSPNQLK 183
Query: 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKL 416
+I GN+ V+++ WL W + N K +D +KA ++ G+PG+GKTTAA L
Sbjct: 184 DICGNKGQVEKIVNWLKDWQNHLRNGFPSDNSK--SDIKGKKALLVHGAPGIGKTTAAHL 241
Query: 417 VCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476
+ G+ +E+NASD R K K+ + + SI N A H T L
Sbjct: 242 AAKSAGYSPLELNASDVRSK---KLIESTTNIDNTSIDTFFGNNNNDAINTNVTH-STCL 297
Query: 477 IMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQ 536
I DE DGMSAGDRGGI + A IK ++IPIICICND+ + K++ N C D+ FR+P
Sbjct: 298 IFDECDGMSAGDRGGIGAMNALIKKTRIPIICICNDKSNPKMRPFQNTCGDILFRRPEAS 357
Query: 537 EIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLL 596
+I R+M I + E ++++ +++L DIR IN + L + + YD ++ +
Sbjct: 358 QIRSRIMSILHKEKMKLDSNVVDQLISGSQSDIRQVINMISTWKLLSNTMNYDQGKELVQ 417
Query: 597 SSAKDEDISPFTAVDKLFG---FNGGKLR-MDERIDLSMSDPDLVPLLIQENYINYRPSS 652
+ K +P+T + LF F + + + D D L+PL +QENY+ P
Sbjct: 418 DNQKFSIQTPWTVMSNLFSPHMFGPTNQKPLAAKADYYFHDHSLIPLFVQENYVKCNPVK 477
Query: 653 A-----GRDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMH 706
A R E R+ ++ AA++ISDGD+ + I QQW L ++ S + PA+ M+
Sbjct: 478 ARDSDHNRSEFNRIKCLSDAADAISDGDLVDSMIHGSQQQWSLMPIHAIHSTVRPASFMY 537
Query: 707 GQRETLEQGE-RNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG--RDTLRLDY 763
G + G R+ F WLG+ S K R L D+ A + K+ + +R Y
Sbjct: 538 G---GFKSGYGRDTISFPAWLGQYSKTNKYNRALGDIQ----ARMRLKISGEANEIRQYY 590
Query: 764 FSLLLKQLTEPL 775
+ L L +PL
Sbjct: 591 YPTLWPSLYKPL 602
>gi|83769742|dbj|BAE59877.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1054
Score = 282 bits (722), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 227/730 (31%), Positives = 350/730 (47%), Gaps = 76/730 (10%)
Query: 99 DDDDFVPPSVKKNSVGATPSKKLKSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGR 158
DDDD V K AT S + G R + DD+ +E KK SP K+S R
Sbjct: 194 DDDDVVMEDAPKQPKRATKSAASQPGRKRKSEALGKEEDDEPQEGPKKVTSPSKASSTAR 253
Query: 159 GGRGAS-------------------GAPAV----GRGRGGGRGGFMNFGERKDPPHK-GE 194
+ P V G + F F R P G
Sbjct: 254 APKKPKGSPSKKDQPESKEIQSIFDSIPTVRPPSPPPESGDKKKFNPFAARARSPAAAGT 313
Query: 195 KEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAG 254
E+P GA +CL GL+FV +G LD+L REE ++L+K++GG+VTG+ S KT+Y++ D
Sbjct: 314 AEIPVGAENCLAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTGAPSSKTSYVVLGGDAGP 373
Query: 255 AKSTKAKELGTPFLTEDGLFDMIR----------ASKPMKALAQAESKKSVEKVAASLPK 304
K ++ + E+GLF++IR A++ + +AE KK + +AA + +
Sbjct: 374 KKLKTIRDHNLKTINEEGLFELIRRLPANGGDGKAAEKYEEKRKAEDKK-IRAMAAEIEQ 432
Query: 305 KSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL 364
E K + + + S A Q+ + WT KY P + N I GN+
Sbjct: 433 ------EEKRKAKATSTAAAKASAGSQAPSSSQSPRPEDELWTTKYAPTSMNMICGNKTA 486
Query: 365 VKQLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422
V++L +WL W++ K N K ++ +A ++ G PG+GKTTAA LV ++ G
Sbjct: 487 VEKLQSWLRDWHK-----NAKGNFSKPGKDGTGIYRAVMIHGPPGIGKTTAAHLVAKLEG 541
Query: 423 FQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRSKHPKTVLIMDEV 481
+ +E NASD+R K + G+ G + S++ + + + ++ VLIMDEV
Sbjct: 542 YDIVETNASDTRSKK--LVETGLLGVLDTTSLQGYFAADGQKVHREKKN---MVLIMDEV 596
Query: 482 DGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
DGMSAGDRGG+ L A K + IP+I ICN+R K+K + +L FR+P ++I R
Sbjct: 597 DGMSAGDRGGVGALAAIAKKTHIPLILICNERRLPKMKPFDHVTYELPFRRPTAEQIRAR 656
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD 601
L I EGL++ L+ L + + DIR IN L + L + ++ R+ + K
Sbjct: 657 LSTICFREGLKIPPPVLDSLIEGTHADIRQIINMLSTVKLDQQNLDFEKGREMSKAWEKH 716
Query: 602 EDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAG--- 654
+ P+ V K+ K ++++I+L +D + L++QENY+ RP+ +G
Sbjct: 717 VILKPWDIVSKILSAQMFSPSSKATLNDKIELYFNDHEFSYLMLQENYLRTRPALSGNYQ 776
Query: 655 --RDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRET 711
++K L L AA SISDGD+ + I QQW L + ++ S + PA+ +G T
Sbjct: 777 GKEQKLKLLELADNAASSISDGDLVDRMIHGTQQQWSLMPTHAVFSFVRPASFAYGNM-T 835
Query: 712 LEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQL 771
G F WLG+NS GK R ++ H+ R S RD +R Y L+ +L
Sbjct: 836 ERAG------FTSWLGQNSKQGKLWRCTREIQ-GHMRLRASG-DRDEIRQQYLPLIWDKL 887
Query: 772 TEPLRVLPKD 781
+R L KD
Sbjct: 888 ---VRRLMKD 894
>gi|389638292|ref|XP_003716779.1| replication factor C subunit 1 [Magnaporthe oryzae 70-15]
gi|351642598|gb|EHA50460.1| replication factor C subunit 1 [Magnaporthe oryzae 70-15]
gi|440465129|gb|ELQ34469.1| replication factor C subunit 1 [Magnaporthe oryzae Y34]
gi|440488577|gb|ELQ68294.1| replication factor C subunit 1 [Magnaporthe oryzae P131]
Length = 1084
Score = 282 bits (722), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 199/635 (31%), Positives = 319/635 (50%), Gaps = 60/635 (9%)
Query: 174 GGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGG 233
GGG G PP G ++PEG DCL GLTFV +G L ++ REEA+ L+KR+GG
Sbjct: 321 GGGNSGA--------PPAAGSIDLPEGQEDCLSGLTFVFTGLLKTIGREEAQALVKRYGG 372
Query: 234 RVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMK---ALAQAE 290
+VTG+ S KT++++ +D +K K K+ + E GLF +I ++ P L +
Sbjct: 373 KVTGAPSGKTSFVVLGDDAGPSKLAKIKQHRLKTIDEVGLFHLI-STLPAHGGSGLGAEK 431
Query: 291 SKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKY 350
+++ E A + + + + + A R A A +S WT KY
Sbjct: 432 AREKREAEAEKVKQAAEEMEAEEKAKRLAAEKARKAAGAKGASALPAPPPPNSQLWTTKY 491
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
P N I GN+ V+++ WL +W + KR + E+A I+SG PG+GK
Sbjct: 492 APTALNHICGNKAQVEKIKNWLENWPKSRKYDFKKRGA---DGLGGERAIIISGPPGIGK 548
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL-------S 463
TTAA + ++ G+ +E NASD+R K + N + ++++N +L
Sbjct: 549 TTAAHMAAKLAGYDVLESNASDTRSKKLVE----------NGVSDVINNTSLLGYFSGDG 598
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
+D+++ VLIMDEVDGMSAGDRGG+ L K +++P+I ICN+R K+K +
Sbjct: 599 KKVDQARK-NIVLIMDEVDGMSAGDRGGVGALAKFCKKTEVPLILICNERRLPKMKPFDH 657
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGL-EVNEIALEELADRVNGDIRMAINQLQYMSLS 582
D+RF +P +I R+M I + EGL ++ ++ L + N DIR IN + + L
Sbjct: 658 VAFDIRFNRPTVDQIRSRIMTICHREGLGKMPPQVIDALIEGCNKDIRQIINMVHSIKLD 717
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGG------KLRMDERIDLSMSDPDL 636
+ + Y + + K + P+ K+ GG K ++++I+L +D +
Sbjct: 718 GASLDYTQTKSMTKAWEKHVILKPWDICQKMLA--GGLFSPASKATLNDKIELYFNDHEF 775
Query: 637 VPLLIQENYINYRPSS-AGR------DEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQ 688
L+IQENY+ +P + +G+ + +K L L+ +A+ESISDGD+ + I QQW
Sbjct: 776 SYLMIQENYLGTKPMALSGKGYNKKEENLKYLELVEKASESISDGDLIDRMIHGPQQQWS 835
Query: 689 LSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLA 748
L + ++ S + PA+ + GQ F WLG NS GK R + ++H H
Sbjct: 836 LMPTHAVFSSVRPASYIAGQLMGAN--------FTSWLGNNSKTGKLGRFVREIHSH--M 885
Query: 749 SRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDEL 783
KS + +R Y +L Q+ + L V KD +
Sbjct: 886 RLKSSGDHNEVRQQYLPVLWNQMIQRLGVDGKDAI 920
>gi|50306785|ref|XP_453368.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642502|emb|CAH00464.1| KLLA0D06897p [Kluyveromyces lactis]
Length = 835
Score = 282 bits (721), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 198/597 (33%), Positives = 312/597 (52%), Gaps = 51/597 (8%)
Query: 194 EKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA 253
E E+PEG +CL GLT V +GTL +L+R +E+L KR+G RVT S+SK T+ ++ E+
Sbjct: 141 ELEIPEGQANCLLGLTIVFTGTLPNLDRSTSENLAKRYGARVTKSISKNTSVVVLGEEAG 200
Query: 254 GAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLP---KKSPQNI 310
K K+LG + E+G F + A P ++ K+ K+ K++ Q
Sbjct: 201 PKKLENIKKLGIKAIDEEG-FKRLIAGMPAGGGDNQQADKARRKLQEQQEQAMKEAEQMA 259
Query: 311 EAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHT 370
+ + K + K V +K + + S WT KY P ++ GN+ +++L T
Sbjct: 260 KEQEEREKKDKLSVGKDVNLSSK---STVTEDSKLWTTKYAPTDLRQLCGNKGAIQKLKT 316
Query: 371 WLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
WL W+ +GKK + +A +LSG PG+GKTTAA LV + LG+ +E NA
Sbjct: 317 WLESWS----------SGKK----PSMRAVMLSGPPGIGKTTAAHLVAKSLGYDVLEKNA 362
Query: 431 SDSRGKA--DAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD 488
SD R K +A + + + + + +S++ S N R V+IMDEVDGMS GD
Sbjct: 363 SDVRSKGLLNASVKFALDHKSVIGMFKSISDDHYSKNGKR-----FVIIMDEVDGMSGGD 417
Query: 489 RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
RGG+ L + + P+I ICN+R K++ + D+ FR+P Q + RLM IA
Sbjct: 418 RGGVGQLAQYCRKTNTPMILICNERNLPKMRPFDHSVLDIPFRRPDAQAVKARLMTIAMR 477
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLS-------SAKD 601
E +++ ++ L GD+R IN L ++ + I D+I+ LS + K
Sbjct: 478 EKFKLDPNVIDRLVSVTRGDMRQIINLLSTVTTTSKSIGSDNIKS--LSDNWEKNVALKI 535
Query: 602 EDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKR 660
DI+P ++ NG K + ++++L D D PL+IQENY + P+ + +
Sbjct: 536 FDITPKLLSGGIYTENGAKQFPLYKKMELYFDDFDFTPLMIQENYTSTTPTLLRKGQT-H 594
Query: 661 LSLIARAAESISDGDIFNVQIRR-NQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNF 719
L+ +A AAESIS+GD+ + +IR QQW L ++ S + PA+++ G R
Sbjct: 595 LNAVAAAAESISEGDLVDKKIRSAEQQWSLLPLHAVLSTVRPASMVAGNV------TRRI 648
Query: 720 NRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
N F +LG+NS GK RLL+D+ +H L++ +K+G LRL Y + + L +PL
Sbjct: 649 N-FSAFLGQNSKTGKFYRLLQDIQYHTRLSTSTNKMG---LRLQYMPTMKRHLLDPL 701
>gi|303315067|ref|XP_003067541.1| BRCA1 C Terminus domain containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240107211|gb|EER25396.1| BRCA1 C Terminus domain containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1068
Score = 282 bits (721), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 209/632 (33%), Positives = 321/632 (50%), Gaps = 55/632 (8%)
Query: 180 FMNFGERKDPPHKGE-KEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
FM +R GE E+P GA +CL GL+FV +G LDSL R+E + L+KR+GG+VTG+
Sbjct: 297 FMAANQRAHASAAGEPAELPIGAENCLAGLSFVFTGVLDSLGRDEGQALVKRYGGKVTGA 356
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM----KALAQAESKKS 294
S KT+Y++ D K ++ + E GLF++IR KA Q E+KK
Sbjct: 357 PSSKTSYVVLGSDAGPKKLETIRKHNLKTINEYGLFELIRKMPANGGDGKAAVQYEAKKK 416
Query: 295 VEK-----VAASL----PKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLT 345
E+ +AA + K S + KAP K++ + AK + +
Sbjct: 417 AEEQKIKVMAAEIDREEKKSSASAAATSVARSTKAP---QKSIPAAAKEAAVDDR----L 469
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHW-NEKFLDTGTKRNGKKQNDASAEKAAILSG 404
WT KY P + N I GN+ V++L +WL +W N +D K+ GK + + +A ++ G
Sbjct: 470 WTVKYAPTSLNMICGNKTAVEKLQSWLRNWRNNAKVDF--KKPGK--DGSGTYRAVMIHG 525
Query: 405 SPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALS 463
PG+GKTTAA LV ++ + +E NASD+R K + G+ G + S++ S E
Sbjct: 526 PPGIGKTTAAHLVAKLENYDVVETNASDTRSKR--LLEDGLRGVLDTTSLQGYFSGEGKK 583
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
+S+ VLIMDEVDGMSAGDRGG+ L A K ++IP+I ICN+R K++ +
Sbjct: 584 V---QSEKKNLVLIMDEVDGMSAGDRGGVGALAAVAKKTRIPMILICNERRLPKMRPFDH 640
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
+L FR+P +I RL I EGL++ L+ L + + DIR +N L + L
Sbjct: 641 VTYELPFRRPTADQIRSRLATICFREGLKIPPQVLDGLIEGTHSDIRQIVNMLSTVKLDS 700
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGF----NGGKLRMDERIDLSMSDPDLVPL 639
+ +D+ +Q + K + P+ V K+ ++++I+L +D + L
Sbjct: 701 QNLDFDEGKQMSKAWEKHVILKPWDIVGKILSAQMFSQSSTATLNDKIELYFNDHEFSYL 760
Query: 640 LIQENYINYRPSSAG-----RDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSS 693
++QENY+ P +AG + K L L AA+SISDGD+ + I QQW L +
Sbjct: 761 MLQENYLKTNPIAAGSYNGRERKFKLLELADNAAQSISDGDLVDRMIHGSQQQWSLMPTH 820
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNR--FGGWLGKNSTMGKNLRLLEDLHFHHLASRK 751
++ S + PA+ + G +R F WLG NS GK R ++++ H+ R
Sbjct: 821 AVFSFVRPASFVSGNM---------VDRVGFTSWLGNNSKQGKMARQIKEIQ-GHMRLRA 870
Query: 752 SKLGRDTLRLDYFSLLLKQLTEPLRVLPKDEL 783
S R +R Y L ++L L V KD +
Sbjct: 871 SG-DRHEIRQQYLPALWEKLVHRLDVDGKDAV 901
>gi|119190369|ref|XP_001245791.1| hypothetical protein CIMG_05232 [Coccidioides immitis RS]
gi|392868674|gb|EAS34462.2| chromosome transmission fidelity factor [Coccidioides immitis RS]
Length = 1068
Score = 282 bits (721), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 209/632 (33%), Positives = 321/632 (50%), Gaps = 55/632 (8%)
Query: 180 FMNFGERKDPPHKGE-KEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
FM +R GE E+P GA +CL GL+FV +G LDSL R+E + L+KR+GG+VTG+
Sbjct: 297 FMAANQRAHASAAGEPAELPIGAENCLAGLSFVFTGVLDSLGRDEGQALVKRYGGKVTGA 356
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM----KALAQAESKKS 294
S KT+Y++ D K ++ + E GLF++IR KA Q E+KK
Sbjct: 357 PSSKTSYVVLGSDAGPKKLETIRKHNLKTINEYGLFELIRKMPANGGDGKAAVQYEAKKK 416
Query: 295 VEK-----VAASL----PKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLT 345
E+ +AA + K S + KAP K++ + AK + +
Sbjct: 417 AEEQKIKVMAAEIDREEKKSSASAAATSVARSTKAP---QKSIPAAAKEAAVDDR----L 469
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHW-NEKFLDTGTKRNGKKQNDASAEKAAILSG 404
WT KY P + N I GN+ V++L +WL +W N +D K+ GK + + +A ++ G
Sbjct: 470 WTVKYAPTSLNMICGNKTAVEKLQSWLRNWRNNAKVDF--KKPGK--DGSGTYRAVMIHG 525
Query: 405 SPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALS 463
PG+GKTTAA LV ++ + +E NASD+R K + G+ G + S++ S E
Sbjct: 526 PPGIGKTTAAHLVAKLENYDVVETNASDTRSKR--LLEDGLRGVLDTTSLQGYFSGEGKK 583
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
+S+ VLIMDEVDGMSAGDRGG+ L A K ++IP+I ICN+R K++ +
Sbjct: 584 V---QSEKKNLVLIMDEVDGMSAGDRGGVGALAAVAKKTRIPMILICNERRLPKMRPFDH 640
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
+L FR+P +I RL I EGL++ L+ L + + DIR +N L + L
Sbjct: 641 VTYELPFRRPTADQIRSRLATICFREGLKIPPQVLDGLIEGTHSDIRQIVNMLSTVKLDS 700
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGF----NGGKLRMDERIDLSMSDPDLVPL 639
+ +D+ +Q + K + P+ V K+ ++++I+L +D + L
Sbjct: 701 QNLDFDEGKQMSKAWEKHVILKPWDIVGKILSAQMFSQSSTATLNDKIELYFNDHEFSYL 760
Query: 640 LIQENYINYRPSSAG-----RDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSS 693
++QENY+ P +AG + K L L AA+SISDGD+ + I QQW L +
Sbjct: 761 MLQENYLKTNPIAAGSYNGRERKFKLLELADNAAQSISDGDLVDRMIHGSQQQWSLMPTH 820
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNR--FGGWLGKNSTMGKNLRLLEDLHFHHLASRK 751
++ S + PA+ + G +R F WLG NS GK R ++++ H+ R
Sbjct: 821 AVFSFVRPASFVSGNM---------VDRVGFTSWLGNNSKQGKMARQIKEIQ-GHMRLRA 870
Query: 752 SKLGRDTLRLDYFSLLLKQLTEPLRVLPKDEL 783
S R +R Y L ++L L V KD +
Sbjct: 871 SG-DRHEIRQQYLPALWEKLVHRLDVDGKDAV 901
>gi|358399726|gb|EHK49063.1| hypothetical protein TRIATDRAFT_289887 [Trichoderma atroviride IMI
206040]
Length = 1033
Score = 281 bits (720), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 196/624 (31%), Positives = 311/624 (49%), Gaps = 74/624 (11%)
Query: 190 PHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCD 249
P + E+PEG +CL GLTFV +G L ++ R+E + L+KR+GG+VTG S KT++++
Sbjct: 289 PAQPAGELPEGEEECLSGLTFVFTGVLQTIGRDEGQALVKRYGGKVTGQPSSKTSFVVLG 348
Query: 250 EDIAGAKSTKAKELGTPFLTEDGLFDMIR----------------------ASKPMKALA 287
+D +K K K G + E GLFD+IR K + +A
Sbjct: 349 DDAGPSKLAKIKANGIKTIDEHGLFDLIRKLPAYGGTGKGAQKAQEKKKAEEEKVKQQIA 408
Query: 288 QAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWT 347
+ E+++ +K+ A K + ++SA P+ + L T
Sbjct: 409 EMEAEEKAKKLEAEQAAKKKAAAQGSTSSAAAQPV-----------------RAPDLLLT 451
Query: 348 EKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPG 407
KY P N+I GN+ V+++ WL +W K +R G + E+A I+SG PG
Sbjct: 452 SKYAPTQLNQICGNKAQVEKIQNWLRNW-PKSKKYNFQRRG--ADGMGGERAIIISGPPG 508
Query: 408 MGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANM 466
+GKTTAA L ++ G+ +E NASD+R K + G+ N S+ + + S +
Sbjct: 509 IGKTTAAHLAAKLEGYDVLESNASDTRSKK--LVETGVSDVMNNTSLLGFFAGDGKS--V 564
Query: 467 DRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCS 526
D +K K VLIMDEVDGMSAGDRGG+ L + +++P+I ICN+R K+K +
Sbjct: 565 DNAKK-KIVLIMDEVDGMSAGDRGGVGALAKFCRKTEVPLILICNERRLPKMKPFDHAAF 623
Query: 527 DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVI 586
D+RF +P ++ R+M I + EGL++ ++ L + N DIR IN + L S +
Sbjct: 624 DIRFNRPTVDQVRSRIMTICHREGLKLPPPVVDALIEGSNKDIRQIINMISTAKLDQSSM 683
Query: 587 KYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLL 640
+D + + K + P+ K+ G GG K ++++I+L +D + L+
Sbjct: 684 SFDQSKAMSKAWEKHVVLKPWDICQKMLG--GGLFAPASKATLNDKIELYFNDHEFSFLM 741
Query: 641 IQENYINYRPSSAGRD-------EVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQS 692
IQENY+ +P + G + +K L L +AAESISDGD+ + I QQ W L +
Sbjct: 742 IQENYLRTKPMAVGANGYTGREATLKALELFDQAAESISDGDLVDRMIHGPQQHWSLMPT 801
Query: 693 SSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKS 752
++ S + PA+ + GQ + F WLG +S GK R + ++H H KS
Sbjct: 802 HAIFSTVRPASFVAGQLIG--------SNFTSWLGNHSKAGKLGRYIREIHSH--MRLKS 851
Query: 753 KLGRDTLRLDYFSLLLKQLTEPLR 776
+R +Y L+ Q + L+
Sbjct: 852 SGDHTEVRQEYLPLMWSQTVDRLQ 875
>gi|320035705|gb|EFW17646.1| chromosome transmission fidelity factor [Coccidioides posadasii
str. Silveira]
Length = 1045
Score = 281 bits (720), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 209/632 (33%), Positives = 321/632 (50%), Gaps = 55/632 (8%)
Query: 180 FMNFGERKDPPHKGE-KEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
FM +R GE E+P GA +CL GL+FV +G LDSL R+E + L+KR+GG+VTG+
Sbjct: 274 FMAANQRAHASAAGEPAELPIGAENCLAGLSFVFTGVLDSLGRDEGQALVKRYGGKVTGA 333
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM----KALAQAESKKS 294
S KT+Y++ D K ++ + E GLF++IR KA Q E+KK
Sbjct: 334 PSSKTSYVVLGSDAGPKKLETIRKHNLKTINEYGLFELIRKMPANGGDGKAAVQYEAKKK 393
Query: 295 VEK-----VAASL----PKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLT 345
E+ +AA + K S + KAP K++ + AK + +
Sbjct: 394 AEEQKIKVMAAEIDREEKKSSASAAATSVARSTKAP---QKSIPAAAKEAAVDDR----L 446
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHW-NEKFLDTGTKRNGKKQNDASAEKAAILSG 404
WT KY P + N I GN+ V++L +WL +W N +D K+ GK + + +A ++ G
Sbjct: 447 WTVKYAPTSLNMICGNKTAVEKLQSWLRNWRNNAKVDF--KKPGK--DGSGTYRAVMIHG 502
Query: 405 SPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALS 463
PG+GKTTAA LV ++ + +E NASD+R K + G+ G + S++ S E
Sbjct: 503 PPGIGKTTAAHLVAKLENYDVVETNASDTRSKR--LLEDGLRGVLDTTSLQGYFSGEGKK 560
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
+S+ VLIMDEVDGMSAGDRGG+ L A K ++IP+I ICN+R K++ +
Sbjct: 561 V---QSEKKNLVLIMDEVDGMSAGDRGGVGALAAVAKKTRIPMILICNERRLPKMRPFDH 617
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
+L FR+P +I RL I EGL++ L+ L + + DIR +N L + L
Sbjct: 618 VTYELPFRRPTADQIRSRLATICFREGLKIPPQVLDGLIEGTHSDIRQIVNMLSTVKLDS 677
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGF----NGGKLRMDERIDLSMSDPDLVPL 639
+ +D+ +Q + K + P+ V K+ ++++I+L +D + L
Sbjct: 678 QNLDFDEGKQMSKAWEKHVILKPWDIVGKILSAQMFSQSSTATLNDKIELYFNDHEFSYL 737
Query: 640 LIQENYINYRPSSAG-----RDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSS 693
++QENY+ P +AG + K L L AA+SISDGD+ + I QQW L +
Sbjct: 738 MLQENYLKTNPIAAGSYNGRERKFKLLELADNAAQSISDGDLVDRMIHGSQQQWSLMPTH 797
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNR--FGGWLGKNSTMGKNLRLLEDLHFHHLASRK 751
++ S + PA+ + G +R F WLG NS GK R ++++ H+ R
Sbjct: 798 AVFSFVRPASFVSGNM---------VDRVGFTSWLGNNSKQGKMARQIKEIQ-GHMRLRA 847
Query: 752 SKLGRDTLRLDYFSLLLKQLTEPLRVLPKDEL 783
S R +R Y L ++L L V KD +
Sbjct: 848 SG-DRHEIRQQYLPALWEKLVHRLDVDGKDAV 878
>gi|317147094|ref|XP_001821879.2| replication factor C subunit 1 [Aspergillus oryzae RIB40]
Length = 1056
Score = 281 bits (720), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 197/610 (32%), Positives = 314/610 (51%), Gaps = 48/610 (7%)
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
G E+P GA +CL GL+FV +G LD+L REE ++L+K++GG+VTG+ S KT+Y++ D
Sbjct: 314 GTAEIPVGAENCLAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTGAPSSKTSYVVLGGDA 373
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIR----------ASKPMKALAQAESKKSVEKVAASL 302
K ++ + E+GLF++IR A++ + +AE KK + +AA +
Sbjct: 374 GPKKLKTIRDHNLKTINEEGLFELIRRLPANGGDGKAAEKYEEKRKAEDKK-IRAMAAEI 432
Query: 303 PKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQ 362
+ E K + + + S A Q+ + WT KY P + N I GN+
Sbjct: 433 EQ------EEKRKAKATSTAAAKASAGSQAPSSSQSPRPEDELWTTKYAPTSMNMICGNK 486
Query: 363 QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422
V++L +WL W++ +K ++ +A ++ G PG+GKTTAA LV ++ G
Sbjct: 487 TAVEKLQSWLRDWHKNAKGNFSKPG---KDGTGIYRAVMIHGPPGIGKTTAAHLVAKLEG 543
Query: 423 FQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRSKHPKTVLIMDEV 481
+ +E NASD+R K + G+ G + S++ + + + ++ VLIMDEV
Sbjct: 544 YDIVETNASDTRSKK--LVETGLLGVLDTTSLQGYFAADGQKVHREKKN---MVLIMDEV 598
Query: 482 DGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
DGMSAGDRGG+ L A K + IP+I ICN+R K+K + +L FR+P ++I R
Sbjct: 599 DGMSAGDRGGVGALAAIAKKTHIPLILICNERRLPKMKPFDHVTYELPFRRPTAEQIRAR 658
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD 601
L I EGL++ L+ L + + DIR IN L + L + ++ R+ + K
Sbjct: 659 LSTICFREGLKIPPPVLDSLIEGTHADIRQIINMLSTVKLDQQNLDFEKGREMSKAWEKH 718
Query: 602 EDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAG--- 654
+ P+ V K+ K ++++I+L +D + L++QENY+ RP+ +G
Sbjct: 719 VILKPWDIVSKILSAQMFSPSSKATLNDKIELYFNDHEFSYLMLQENYLRTRPALSGNYQ 778
Query: 655 --RDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRET 711
++K L L AA SISDGD+ + I QQW L + ++ S + PA+ +G T
Sbjct: 779 GKEQKLKLLELADNAASSISDGDLVDRMIHGTQQQWSLMPTHAVFSFVRPASFAYGNM-T 837
Query: 712 LEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQL 771
G F WLG+NS GK R ++ H+ R S RD +R Y L+ +L
Sbjct: 838 ERAG------FTSWLGQNSKQGKLWRCTREIQ-GHMRLRASG-DRDEIRQQYLPLIWDKL 889
Query: 772 TEPLRVLPKD 781
+R L KD
Sbjct: 890 ---VRRLMKD 896
>gi|440635814|gb|ELR05733.1| hypothetical protein GMDG_07576 [Geomyces destructans 20631-21]
Length = 1046
Score = 281 bits (719), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 204/619 (32%), Positives = 313/619 (50%), Gaps = 57/619 (9%)
Query: 195 KEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAG 254
KE+P GA +CL GLTFV +G L+++ REE ++L+K++GG+VTG+ S KT+Y++ D
Sbjct: 290 KELPVGADNCLAGLTFVFTGLLETISREEGQELVKKYGGKVTGAPSGKTSYVVLGSDAGP 349
Query: 255 AKSTKAKELGTPFLTEDGLFDMIRASKPM------------KALAQAESKKSVEKVAASL 302
+K K L + E GLF ++ A+ KAL + + + K+ A
Sbjct: 350 SKLEKIASLKIKTINEHGLFALVCATSEHLTQTGGTTRAAEKALEKQKEAEKKMKIEAEE 409
Query: 303 PKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQ 362
++ + A+S +A + E + +A PA + N+ S L WT KY P N+I GN+
Sbjct: 410 EERQERIRAAESENAARKAAES-RGLAPPANK---NLAGSQL-WTVKYAPSKMNQICGNK 464
Query: 363 QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422
V ++ TWL W K G + GK + ++ ++ G PG+GKTTAA L ++ G
Sbjct: 465 GQVDKIQTWLQGW-PKAHKLGFQLPGK--DGLGIYRSIVIYGPPGIGKTTAAHLASKLEG 521
Query: 423 FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL---SANMDR---SKHPKTVL 476
+ IE NASD+R K + +++++N +L A D SK K VL
Sbjct: 522 YDVIESNASDTRSKKLVEFG----------FQDVLNNNSLLGFFAGHDEPVDSKKKKIVL 571
Query: 477 IMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQ 536
IMDEVDGMSAGDRGG+ L K + IPII ICN+ K+ + +++ FR+P
Sbjct: 572 IMDEVDGMSAGDRGGVGALAKICKKTDIPIILICNEFRIPKMNPFRHVVAEVPFRRPTVD 631
Query: 537 EIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLL 596
++ R+ I + EGL+++ A++ L + N DIR +N L L + + +D +
Sbjct: 632 QVRSRVATICHREGLKLSREAMDALIEGSNKDIRQVVNMLSSAKLDQAAMDFDQTKSMSK 691
Query: 597 SSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINYRP-- 650
K + P+ KL G K ++++I+L +D + L+IQENY+ RP
Sbjct: 692 QWEKHVVLKPWDICHKLLGSGMFAPSSKSTLNDKIELYFNDHEFSYLMIQENYLRTRPLM 751
Query: 651 -----SSAGRDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAAL 704
S +K L L +AAESISDGD+ + I QQW L ++ S + PA+
Sbjct: 752 PPNQNLSPREQRLKTLELADKAAESISDGDLVDRMIHGSQQQWSLMPVHAVFSSVRPASF 811
Query: 705 MHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYF 764
M G GE F WLG NS GK R ++++ H+ R S R +R Y
Sbjct: 812 MSGAV----TGEMPFTT---WLGNNSKHGKLSRFVKEIQ-SHMRLRTSG-DRHEIRQQYL 862
Query: 765 SLLLKQLTEPLRVLPKDEL 783
L QL + L + KD +
Sbjct: 863 PTLWTQLIKRLEIEGKDSV 881
>gi|190407527|gb|EDV10794.1| replication factor C subunit 1 [Saccharomyces cerevisiae RM11-1a]
Length = 861
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 202/598 (33%), Positives = 306/598 (51%), Gaps = 51/598 (8%)
Query: 198 PEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKS 257
PEG P+CL GLT V +G L +LER +E L KR+G RVT S+S KT+ ++ ++ K
Sbjct: 151 PEGKPNCLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVLGDEAGPKKL 210
Query: 258 TKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSA 317
K K+L + E+G F + A P A+ ++ EK L ++ NI K
Sbjct: 211 EKIKQLKIKAIDEEG-FKQLIAGMP----AEGGDGEAAEKARRKLEEQ--HNIATKEAEL 263
Query: 318 -PKAPIERMKTVASPAKRKGQNIQQSSLT------WTEKYRPKTPNEIVGNQQLVKQLHT 370
K ER K +A+ + G ++++ ++ WT KY P ++ GN+ V +L
Sbjct: 264 LVKKEEERSKKLAA-TRVSGGHLERDNVVREEDKLWTVKYAPTNLQQVCGNKGSVMKLKN 322
Query: 371 WLAHWNEKFLDTGTKRNGKKQ---NDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
WLA+W +K+N K + + +AA+L G PG+GKTTAA LV Q LG+ +E
Sbjct: 323 WLANWE------NSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE 376
Query: 428 VNASDSRGKADAKISKGIGGS--NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS 485
NASD R K ++ G+ + N + + NE + N++ KH V+IMDEVDGMS
Sbjct: 377 QNASDVRSKT--LLNAGVKNALDNMSVVGYFKHNEE-AQNLN-GKH--FVIIMDEVDGMS 430
Query: 486 AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQI 545
GDRGG+ L + + P+I ICN+R K++ C D++FR+P I RLM I
Sbjct: 431 GGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTI 490
Query: 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDIS 605
A E +++ ++ L GDIR IN L +S + I +++I + + K+ +
Sbjct: 491 AIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIALK 550
Query: 606 PFTAVDKLF------GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
PF K+ ++++I L D D PL+IQENY++ RPS +
Sbjct: 551 PFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPGQ-S 609
Query: 660 RLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERN 718
L + AA IS GDI +IR ++Q W L ++ S + PA+ + G G N
Sbjct: 610 HLEAVDEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAGHM----AGRIN 665
Query: 719 FNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F WLG+NS K RLL+++H+H L + K+G LRLDY K+L +P
Sbjct: 666 FT---AWLGQNSKSAKYYRLLQEIHYHTRLGTSTDKIG---LRLDYLPTFRKRLLDPF 717
>gi|449299008|gb|EMC95022.1| hypothetical protein BAUCODRAFT_35017 [Baudoinia compniacensis UAMH
10762]
Length = 782
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 196/615 (31%), Positives = 304/615 (49%), Gaps = 61/615 (9%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
E+P+GA +CL GLTFV +G L+ L RE+ ++L+K++GG+VTG+ S KT+Y++ ED
Sbjct: 126 ELPQGADNCLAGLTFVFTGQLERLGREQGQELVKQYGGKVTGAPSSKTSYVVLGEDAGPK 185
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKST 315
K K+ + E+GLF++I+ P A + K EK AK
Sbjct: 186 KLETIKKNNLKVINEEGLFELIK-RLPANGGDSAAAGKMAEK-------------RAKEE 231
Query: 316 SAPKAPIERMKTVASPAKRKGQNIQQS---------------------SLTWTEKYRPKT 354
+ +E M + K K Q + + WT +Y P+
Sbjct: 232 EQMRKAVEEMDKQEAAVKLKIQAAAAAASADKGGTPKGKGKTPVDGPDTRLWTVRYAPQQ 291
Query: 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAA 414
++I GN+ V +L WL ++ K G K G + + +A ++ G PG+GKTTAA
Sbjct: 292 LSQICGNKAQVDKLQRWLRNF-PKSQRVGFKMPGP--DGSGTHRAVMIHGPPGIGKTTAA 348
Query: 415 KLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474
LV ++ G+ +E NASD+R K + G+ G S L+ A + + K
Sbjct: 349 HLVAKLEGYDIVESNASDTRSKK--LVDTGLKG--VLSTTSLMGYFASGTDSVEASKKKL 404
Query: 475 VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPR 534
VLIMDEVDGMSAGDRGG+ L A K ++IP+I ICNDR K+K DL FR+P
Sbjct: 405 VLIMDEVDGMSAGDRGGVGALAAVCKKTQIPMILICNDRKLPKMKPFDFVTYDLAFRRPT 464
Query: 535 KQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQR 594
+I R+ IA EGL++ + L + DIR +N + L + Y++ +
Sbjct: 465 TDQIRSRISTIAFREGLKMPANVINALIEGSGADIRQVVNMISTAKLDSQTLTYEEGKDM 524
Query: 595 LLSSAKDEDISPFTAVDKLFG---FN-GGKLRMDERIDLSMSDPDLVPLLIQENYINYRP 650
+ K + P+ V K+ G FN K ++++ +L +D + PL++QENY+ P
Sbjct: 525 SKAWEKHIVLRPWDMVAKILGGGLFNPAAKSTLNDKQELYFNDHEFAPLMLQENYLGTSP 584
Query: 651 SSAGR-------DEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPA 702
A + + L L+++AA+SISDGD+ + I QQW L + + S + PA
Sbjct: 585 QRANQYNDNPKIRSLAVLDLVSKAADSISDGDLVDRMIHGSQQQWALMPTHAFFSFVRPA 644
Query: 703 ALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLD 762
+ ++G Q RF WLGKNST GK R+++++ H + R +R
Sbjct: 645 SFIYGSLAGHGQ-----TRFTQWLGKNSTQGKLTRMVKEIQGH--MRLRVTADRHEIRQT 697
Query: 763 YFSLLLKQLTEPLRV 777
Y +L ++L LR
Sbjct: 698 YVPMLYERLIGRLRT 712
>gi|453089734|gb|EMF17774.1| DNA replication factor C, large subunit [Mycosphaerella populorum
SO2202]
Length = 1100
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 195/613 (31%), Positives = 311/613 (50%), Gaps = 49/613 (7%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
++P G +CL GL FV +G L L RE+ ++LIKR+GG + + S KT+Y++ ED
Sbjct: 342 DMPVGQENCLAGLAFVFTGQLQRLGREQGQNLIKRYGGDIKTAPSSKTSYVVLGEDAGPK 401
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQ-----NI 310
K + + EDGLF++IR P + A ++K EK+A + Q +
Sbjct: 402 KLDTIAKHKLKVINEDGLFELIR-RLPANGGSGAAAEKYAEKIAKEEQQIREQAAELDRM 460
Query: 311 EAKSTSAPKAPIERMKTVASPAKRKGQNIQQS--------------SLTWTEKYRPKTPN 356
EA+ + A SP K+ ++ Q + S WT KY P +
Sbjct: 461 EAEQKAKSAAAAAAKAAKQSPVKQTSKSAQAAAKSSKGKEVADGPDSRLWTVKYAPTQLS 520
Query: 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKL 416
I GN+ V++L WL + K TG K G N + +A ++ G PG+GKTTAA L
Sbjct: 521 AICGNKGQVEKLQAWLRAF-PKNQRTGFKMGGP--NGSGVHRAVMIHGPPGIGKTTAAHL 577
Query: 417 VCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476
V ++ G+ +E NASD+R K + G+ G+ A + L+ A + + K VL
Sbjct: 578 VAKLEGYDIVESNASDTRSKK--LVETGLKGTLAAT--SLLGYFAQGEEEVKDSNKKLVL 633
Query: 477 IMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCS-DLRFRKPRK 535
IMDEVDGMSAGDRGG+ L A K +++P+I ICNDR K+K ++C+ DL FR+P
Sbjct: 634 IMDEVDGMSAGDRGGVGALAAVCKKTQVPMILICNDRKLPKMKPF-DFCTFDLPFRRPTT 692
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRL 595
++I R+M I E L++ + L + DIR IN + L + ++D +
Sbjct: 693 EQIRGRIMTITFREKLKLPPNVVNALIEGSGADIRQVINMVSQAKLDDQAMSFEDGKDMS 752
Query: 596 LSSAKDEDISPFTAVDKLFG---FN-GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPS 651
+ K + P+ V K+ G FN + ++++ +L +D + PL++QENY+ P
Sbjct: 753 KAWEKHTVLKPWDMVGKILGGGLFNDASQATLNDKTELYFNDHEFAPLMLQENYLGTNPQ 812
Query: 652 SAGR-------DEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAA 703
+ R + L L ++AA+SISDGD+ + I QQW L + ++ S + PA+
Sbjct: 813 RSNRYNGEPRKKRLAALELASKAADSISDGDLVDRMIHGSQQQWSLMPTHAVFSFVRPAS 872
Query: 704 LMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDY 763
++G + RF WLG NS GK R ++++ H+ R S ++ +R Y
Sbjct: 873 FVYGSMAGSQ------TRFTAWLGNNSKTGKLSRFIKEIQ-GHMRLRVS-ADKNEIRQTY 924
Query: 764 FSLLLKQLTEPLR 776
+L ++L + L+
Sbjct: 925 LPILFEKLVKRLQ 937
>gi|254566547|ref|XP_002490384.1| Replication factor C subunit [Komagataella pastoris GS115]
gi|238030180|emb|CAY68103.1| Replication factor C subunit [Komagataella pastoris GS115]
gi|328350779|emb|CCA37179.1| Replication factor C subunit 1 [Komagataella pastoris CBS 7435]
Length = 908
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 190/601 (31%), Positives = 309/601 (51%), Gaps = 63/601 (10%)
Query: 195 KEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAG 254
+++P+G P+CL GLT V +G + +++R +AE+L KR+G +VT SVSKKT+ ++ +
Sbjct: 213 EDLPQGRPNCLIGLTMVFTGVMPTIDRTQAEELAKRYGAKVTKSVSKKTSVVVLGSEAGP 272
Query: 255 AKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKS 314
+K K K+ + EDG +I++ M A + + + +
Sbjct: 273 SKVKKIKDFKIKAIDEDGFITLIKS---MPADGGSGEAAAKALEKKK---------QEEE 320
Query: 315 TSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAH 374
S +A E ++ +P+ ++ N S WT KY P N++ GN+ +K+L WL++
Sbjct: 321 LSIKQAEKEEAESQKNPSAQEATN----SALWTVKYAPANLNQVCGNKTNIKKLTNWLSN 376
Query: 375 WNEKFLDTGTKRNGKKQ---NDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431
W E KR+G K + +A ++SG PG+GKTTAA LV + LGF IE NAS
Sbjct: 377 WFE------NKRSGFKHPGPDGTGVFRACLISGPPGIGKTTAAHLVAKSLGFDIIEKNAS 430
Query: 432 DSRGKADAKISKGIGGSNANSIKELVSNEAL-----SANMDRSKHPKTVLIMDEVDGMSA 486
D R K+ + +K ++ N +L S + S K LIMDEVDGMS+
Sbjct: 431 DVRSKSLL----------MSDVKTVLDNTSLVGFFHSQDNAESNQRKFCLIMDEVDGMSS 480
Query: 487 GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIA 546
GD GG+ L +I+ PII ICND+ K++ DL FR+P E+ R+M IA
Sbjct: 481 GDHGGVGALAQFCRITSTPIILICNDKSLPKMRPFDRVTLDLPFRRPSASELKSRIMTIA 540
Query: 547 NAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISP 606
+ E L+++ +++L + DIR IN L +S + +I +++ + + K+ + P
Sbjct: 541 HREKLQLDPNVIDQLVEATKNDIRQIINLLSTVSKTQKIIGFENAAEIKQAWKKEVALKP 600
Query: 607 FTAVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLLIQENYINYRPS-----SAGR 655
F ++ +GG +++++ L D D PL++ ENY + P+ S
Sbjct: 601 FDITSRI--LSGGIYAPSSNFSLNDKLGLFFDDIDFSPLMVHENYRSTVPTKLANVSPNE 658
Query: 656 DEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQ 714
+ +K L L+++AA+SIS+ D+ N IR QQW L L S + ++ + G +
Sbjct: 659 ENLKHLELLSQAADSISEADLVNNCIRGGEQQWSLLPFFGLLSTVRASSFVAGSL----R 714
Query: 715 GERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEP 774
G NF +LG+NS K RLL++L +H +S K+ RL Y S L+ +L+ P
Sbjct: 715 GRINFT---SYLGQNSKKLKYDRLLQELQYH--SSTKTLTNNIEFRLSYMSPLITKLSHP 769
Query: 775 L 775
L
Sbjct: 770 L 770
>gi|238496567|ref|XP_002379519.1| DNA replication factor C subunit Rfc1, putative [Aspergillus flavus
NRRL3357]
gi|220694399|gb|EED50743.1| DNA replication factor C subunit Rfc1, putative [Aspergillus flavus
NRRL3357]
Length = 852
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 198/611 (32%), Positives = 314/611 (51%), Gaps = 50/611 (8%)
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
G E+P GA +CL GL+FV +G LD+L REE ++L+K++GG+VTG+ S KT+Y++ D
Sbjct: 110 GTAEIPVGAENCLAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTGAPSSKTSYVVLGGDA 169
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIR----------ASKPMKALAQAESKKSVEKVAASL 302
K ++ + E+GLF++IR A++ + +AE KK + +AA +
Sbjct: 170 GPKKLKTIRDHNLKTINEEGLFELIRRLPANGGDGKAAEKYEEKRKAEDKK-IRAMAAEI 228
Query: 303 PKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQ 362
+ E K + + + S A Q+ + WT KY P + N I GN+
Sbjct: 229 EQ------EEKRKAKATSTAAAKASAGSQAPSSSQSPRPEDELWTTKYAPTSMNMICGNK 282
Query: 363 QLVKQLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPGMGKTTAAKLVCQM 420
V++L +WL W++ K N K ++ +A ++ G PG+GKTTAA LV ++
Sbjct: 283 TAVEKLQSWLRDWHK-----NAKGNFSKPGKDGTGIYRAVMIHGPPGIGKTTAAHLVAKL 337
Query: 421 LGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDE 480
G+ +E NASD+R K + +G + S++ + + + ++ VLIMDE
Sbjct: 338 EGYDIVETNASDTRSKKLVETGL-LGVLDTTSLQGYFAADGQKVHREKKN---MVLIMDE 393
Query: 481 VDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK 540
VDGMSAGDRGG+ L A K + IP+I ICN+R K+K + +L FR+P ++I
Sbjct: 394 VDGMSAGDRGGVGALAAIAKKTHIPLILICNERRLPKMKPFDHVTYELPFRRPTAEQIRA 453
Query: 541 RLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAK 600
RL I EGL++ L+ L + + DIR IN L + L + ++ R+ + K
Sbjct: 454 RLSTICFREGLKIPPPVLDSLIEGTHADIRQIINMLSTVKLDQQNLDFEKGREMSKAWEK 513
Query: 601 DEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAG-- 654
+ P+ V K+ K ++++I+L +D + L++QENY+ RP+ +G
Sbjct: 514 HVILKPWDIVSKILSAQMFSPSSKATLNDKIELYFNDHEFSYLMLQENYLRTRPALSGNY 573
Query: 655 ---RDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRE 710
++K L L AA SISDGD+ + I QQW L + ++ S + PA+ +G
Sbjct: 574 QGKEQKLKLLELADNAASSISDGDLVDRMIHGTQQQWSLMPTHAVFSFVRPASFAYGNM- 632
Query: 711 TLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQ 770
T G F WLG+NS GK R ++ H+ R S RD +R Y L+ +
Sbjct: 633 TERAG------FTSWLGQNSKQGKLWRCTREIQ-GHMRLRASG-DRDEIRQQYLPLIWDK 684
Query: 771 LTEPLRVLPKD 781
L +R L KD
Sbjct: 685 L---VRRLMKD 692
>gi|345564995|gb|EGX47951.1| hypothetical protein AOL_s00081g278 [Arthrobotrys oligospora ATCC
24927]
Length = 1029
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 196/614 (31%), Positives = 300/614 (48%), Gaps = 58/614 (9%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
PP G K++P GA +CL GLTFV +G S+ R++A +L+KR+GG+VTG S+KT+Y++
Sbjct: 290 PPPSGTKDIPTGAENCLAGLTFVFTGNQQSISRDDAVELVKRYGGKVTGGPSRKTSYVVV 349
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQ 308
+ K +EL + EDGLF +I + A + A +K Q
Sbjct: 350 GSEAGPKKLETIRELKLKTIDEDGLFALISK---LPAHGGDSTAAQAAAKKAKDEEKKIQ 406
Query: 309 NIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQL 368
I + MK S A K S L WT KY P T EI GN+ V +L
Sbjct: 407 EIA-----------KEMKPNTSVAPGKEAKDPNSQL-WTVKYSPATMKEICGNKGQVDKL 454
Query: 369 HTWLAHWNEKFLDTGTKRNGKKQ--NDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426
WL +W K+N K + + +A ++ G PG+GKTTAA LV ++ G+ +
Sbjct: 455 QKWLQNWPRNL-----KKNFKMPGPDGSGLYRAVMIHGPPGVGKTTAAHLVAKLEGYDVL 509
Query: 427 EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA-------NMDRSKHPKTVLIMD 479
E NASD+R K S+K ++ N +L +D +K K VLIMD
Sbjct: 510 ESNASDTRSKKLLD----------TSLKGVLDNRSLMGYFNAGDKKVDAAKQ-KIVLIMD 558
Query: 480 EVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIA 539
EVDGMS GDRGG+ + A + ++IP+ICICNDR K+K + DL+FR+P EI
Sbjct: 559 EVDGMSGGDRGGVGQMAAICRKTQIPVICICNDRRLPKMKPFDHVTYDLQFRRPTATEIR 618
Query: 540 KRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSA 599
R+M I EGL+++ A++ L + + DIR IN L +S + +D+ + +
Sbjct: 619 TRMMTICYREGLKLSPQAIDSLTEGSHSDIRQIINMLSTFGVSGKEMSFDESKNMASAWQ 678
Query: 600 KDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGR 655
K + P+ +L + K ++++I+L +D + L+IQ+NY+ P A
Sbjct: 679 KHVVLKPWDIAQQLLQGHMFAPTSKKTLNDKIELYFNDHEFSYLMIQDNYLKPNPQRASN 738
Query: 656 DE-----VKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQR 709
+ +K L L +AAESISDGD+ + I QQ W + ++ S + P++ M G
Sbjct: 739 YQGPERRLKLLELADKAAESISDGDLVDAMIHGPQQHWSMMPVHAVFSTVAPSSFMSGSY 798
Query: 710 ETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLK 769
+F W G+NS K R ++++ H + R +R Y + +
Sbjct: 799 GG------GHMQFSAWFGQNSKQQKLNRYVKEIQSH--MRLRCSADRHEVRQFYVPMFWQ 850
Query: 770 QLTEPLRVLPKDEL 783
L L KD +
Sbjct: 851 MLCRQLEREGKDAV 864
>gi|346326610|gb|EGX96206.1| DNA replication factor C subunit Rfc1, putative [Cordyceps
militaris CM01]
Length = 1028
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 197/605 (32%), Positives = 312/605 (51%), Gaps = 44/605 (7%)
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
G ++P+G +CL GL+FV +G L ++ REE + L+KR+GG+VTG S KT++++ +D
Sbjct: 297 GSADIPDGEEECLSGLSFVFTGVLQTIAREEGQALVKRYGGKVTGQPSSKTSFVVLGDDA 356
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEA 312
+K K K G + E+GLFD+IR P ++K+ EK A K Q E
Sbjct: 357 GPSKLAKIKSFGIRTIDENGLFDLIR-KLPAHGGTGKGAQKAQEKKKADEEKIKQQIAEM 415
Query: 313 KSTSAPKAPIERMKTVASP----AKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQL 368
++ K E A+ A R + + T KY P N I GN+ V+++
Sbjct: 416 EAEEKAKKVAEAKAAKAAASVPGAARPPRPSATPTQLLTSKYAPTQLNHICGNKGQVEKI 475
Query: 369 HTWLAHWNEKFLDTGTKRNGKKQ--NDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426
WL +W + K N +K+ + E+A I+SG PG+GKTTAA L ++ G+ +
Sbjct: 476 QAWLRNWPK-----AKKYNFQKRGADGLGGERAIIISGPPGIGKTTAAHLAAKLEGYDVL 530
Query: 427 EVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS 485
E NASD+R K + G+ N S+ + + N+D +K K VLIMDEVDGMS
Sbjct: 531 ESNASDARSKK--LVETGVSDVMNNTSLLGFFAGDG--KNVDTTKK-KIVLIMDEVDGMS 585
Query: 486 AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQI 545
GDRGG+ + K +++P+I ICN+R K+K + D+RF +P +++ R+M I
Sbjct: 586 GGDRGGVGAMAKFCKKTEVPLILICNERRLPKMKPFDHVAFDVRFNRPTVEQVRSRIMTI 645
Query: 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDIS 605
+ EGL++ ++ L + N DIR IN + L + + ++ + + K +
Sbjct: 646 CHREGLKLPPPVVDALIEGSNKDIRQIINMISTAKLDQTSMDFNQGKAMTKAWEKHVVLK 705
Query: 606 PFTAVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAG----- 654
P+ K+ G GG K ++++I+L +D D L+IQENY+ +P +
Sbjct: 706 PWDICQKMLG--GGLFAPASKATLNDKIELYFNDHDFSFLMIQENYLRTKPMALNGKGYN 763
Query: 655 -RDE-VKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRET 711
R+E +K L L +AAESISDGD+ + I QQ W L + ++ S + PA+ + GQ
Sbjct: 764 KREERLKTLELFDQAAESISDGDLVDRMIHGPQQHWSLMPTHAIFSTVRPASFIAGQLMG 823
Query: 712 LEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQL 771
+ F +LG S GK R + ++H H KS + +R Y +L KQL
Sbjct: 824 --------SSFTSYLGNLSKTGKLGRYIREIHSH--MRLKSSGDHNEIRQQYLPVLWKQL 873
Query: 772 TEPLR 776
+ L+
Sbjct: 874 IDKLQ 878
>gi|326469755|gb|EGD93764.1| replication factor C protein [Trichophyton tonsurans CBS 112818]
gi|326485097|gb|EGE09107.1| replication factor C subunit 1 [Trichophyton equinum CBS 127.97]
Length = 1060
Score = 279 bits (713), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 193/611 (31%), Positives = 319/611 (52%), Gaps = 47/611 (7%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
++P G P+CL GL+FV +G LDSL RE+ ++L+K++GG+ + S KT+Y++ D
Sbjct: 309 DLPVGEPNCLAGLSFVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLGNDAGPK 368
Query: 256 KSTKAKELGTPFLTEDGLFDMIR----------ASKPMKALAQAESKKSVEKVAASLPKK 305
K ++ + E GLF++IR A++ +AE +K ++++AA + ++
Sbjct: 369 KLETIQKYKLKTINEGGLFELIRKLPANGGDGKAAQQYAEKKKAEEQK-IKEMAAEIDRE 427
Query: 306 SPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLV 365
+ TSAP + K ++ KR+ + + WT KY P + + I GN+ V
Sbjct: 428 EKKRAAESKTSAPPSSGTGTKDKSASDKREPVDDR----LWTTKYAPTSLSMICGNKGTV 483
Query: 366 KQLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423
++L TWL +W+ + N KK ++ + + ++ G PG+GKTTAA LV ++ F
Sbjct: 484 EKLQTWLRNWH-----ANARANFKKPGKDGSGTYRTVMIHGPPGIGKTTAAHLVAKLENF 538
Query: 424 QAIEVNASDSRGKADAKIS-KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVD 482
+E NASD+R K + + +G+ + S++ S E + VLIMDEVD
Sbjct: 539 DIVETNASDTRSKKLLETTLRGV--LDTTSLQGYFSGEGKKVEPGKKN---LVLIMDEVD 593
Query: 483 GMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRL 542
GMSAGDRGG+ + A K ++IPII ICN+R K+K + +L FR+P ++I RL
Sbjct: 594 GMSAGDRGGVGAVAAIAKKTRIPIILICNERRLPKMKPFDHVTFELPFRRPTAEQIRARL 653
Query: 543 MQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDE 602
I EG+++ L+ L + + DIR IN L + LS + + YD ++ + K
Sbjct: 654 FTICYREGIKIPPQVLDGLIEGTHADIRQVINMLSTIKLSANNLDYDQGKEMSKAWEKHV 713
Query: 603 DISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINYRP----SSAG 654
+ P+ V K+ K ++++++L +D + L++QENY+ P S +G
Sbjct: 714 ILKPWDIVGKILSAQVFAPSSKATLNDKVELYFNDHEFSYLMLQENYLRTNPMAANSYSG 773
Query: 655 RD-EVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETL 712
++ + K L L +AAESISDGD+ + I QQW L + + S + PA+ M G T
Sbjct: 774 KERQFKLLELADKAAESISDGDLVDRMIHGSQQQWSLMPTHAAFSFVRPASFMAGNM-TD 832
Query: 713 EQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLT 772
G F WLG NS GK R ++++ H+ R S R +R Y ++ +
Sbjct: 833 RVG------FTSWLGNNSKQGKMARQVKEIQ-GHMRLRASG-DRHDIRQQYMPVIWNKTV 884
Query: 773 EPLRVLPKDEL 783
+ + V KD +
Sbjct: 885 KRMEVDGKDAV 895
>gi|171689552|ref|XP_001909716.1| hypothetical protein [Podospora anserina S mat+]
gi|170944738|emb|CAP70849.1| unnamed protein product [Podospora anserina S mat+]
Length = 912
Score = 278 bits (712), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 194/609 (31%), Positives = 305/609 (50%), Gaps = 48/609 (7%)
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
G ++PEG DCL G TFV +G L ++ RE+ + L+KR+GG+VTG+ S KT++++ +D
Sbjct: 254 GIVDIPEGEEDCLVGKTFVFTGLLKTISREDGQALVKRYGGKVTGAPSSKTDFVVLGDDA 313
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIR---ASKPMKALAQAESKK--SVEKVAASLPKKSP 307
+K K KE + E+GLF +I+ A ++A KK E+ A +
Sbjct: 314 GPSKLRKIKEHNIKTIDEEGLFYLIKTMPAGGGGGKGSEAARKKREQEEQKAREEAARME 373
Query: 308 QNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQ 367
+ + K A +A + A + + L WT KY P N+I GN+ V++
Sbjct: 374 EEEKIKRAEATRAAKAAAAARGTAAPAPQPTVPLTQL-WTSKYAPTALNQICGNKANVER 432
Query: 368 LHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
+ WL +W + KR + +A I+SG PG+GKTT+A L ++ G+ IE
Sbjct: 433 IQGWLKNWPKHKKYDFQKRGA---DGMGGYRAVIISGPPGIGKTTSAHLAAKLEGYDVIE 489
Query: 428 VNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANM-------DRSKHPKTVLIMDE 480
NASDSR K + N + E+V+N +L D +K K VL+MDE
Sbjct: 490 SNASDSRSKKLVE----------NGVMEVVNNTSLLGYFAGDGKTADAAKK-KIVLVMDE 538
Query: 481 VDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK 540
VDGMSAGDRGG+ L K +++P+I ICNDR K+K + D++F++P +I
Sbjct: 539 VDGMSAGDRGGVGALAKLCKKTEVPMILICNDRRLPKMKPFDHVAFDIKFQRPTVDQIRS 598
Query: 541 RLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAK 600
R+M I + EGL++ + L + DIR IN L L + + +D + + K
Sbjct: 599 RVMTICHREGLKMPLPVVNALIEGSGKDIRQIINMLATAKLDQTTMDFDQTKAMAKAWEK 658
Query: 601 DEDISPFTAVDKLFG----FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAG-- 654
+ P+ K+ G + K ++++I+L +D + L++QENY+ +P+ G
Sbjct: 659 HVILKPWDICQKIIGGGMFSSASKATLNDKIELYFNDHEFSYLMVQENYLRAKPNVIGGV 718
Query: 655 -----RDEVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQ 708
+K L L+ AAESISDGD+ + I QQ W L + ++ S + PA+ + GQ
Sbjct: 719 GMHPKEQNLKHLELVDMAAESISDGDLVDRMIHGPQQHWSLMPTHAVFSTVKPASYIAGQ 778
Query: 709 RETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLL 768
F WLG NS GK R + ++H H KS + +R Y +L
Sbjct: 779 FGAQPT-------FTSWLGNNSKYGKLSRYVREIHSH--MRLKSSGDHNEIRQQYLPVLW 829
Query: 769 KQLTEPLRV 777
+QL + L +
Sbjct: 830 RQLVKKLEL 838
>gi|430811893|emb|CCJ30648.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1026
Score = 278 bits (710), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 189/566 (33%), Positives = 294/566 (51%), Gaps = 61/566 (10%)
Query: 195 KEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAG 254
KE+P G +CL GLTFV +G + S++REE +LIK++GG+VT + S KT++++ ED
Sbjct: 150 KEIPIGRENCLSGLTFVFTGIMKSIDREEGHNLIKKYGGKVTNAPSSKTSFVVLGEDAGP 209
Query: 255 AKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKS 314
K K+ + E+GLF +I+ S + + A+ K+ ++ EA+
Sbjct: 210 KKIEVIKKNNLKTIDENGLFYLIKN--------MPTSGGNTKAAQAAQKKREEEDQEARE 261
Query: 315 TSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAH 374
+ AP + +K Q+ Q WT KY P+T EI GN+ LV++L WL
Sbjct: 262 MAKSMAP-------KTSEMQKSQSCQ----LWTTKYAPRTLKEICGNKSLVEKLQKWLHD 310
Query: 375 WNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434
W + G R A ++SG PG+GKTT+A LV + G+ +E NASD+R
Sbjct: 311 WLSESDGLGFYR------------AVLISGPPGIGKTTSAHLVASLEGYDVLEFNASDTR 358
Query: 435 GK--ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGI 492
+ + ++K ++ N L A K K V+IMDEVDG+S+GD+GGI
Sbjct: 359 SRKLLEESLNKVYNNTSLNGFFLLDEQTA------EKKKNKFVIIMDEVDGVSSGDQGGI 412
Query: 493 ADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLE 552
+L + IK ++IPIICICNDR S+KL L DL+FR+P + R+M IA EGL+
Sbjct: 413 GELNSFIKKTQIPIICICNDRASRKLLPLDRTTFDLKFRRPDVNSLRSRIMSIAYREGLK 472
Query: 553 VNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDK 612
+ A+++LA+ +GDIR IN L LS + + DD + ++ K + P+ V K
Sbjct: 473 LEPQAIDQLAESTHGDIRQIINILSSWKLSQNSMNIDDGKNAAKAAEKHIIMKPWDIVGK 532
Query: 613 LFGFNGG------KLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAG------RDEVKR 660
GG K+ + ++I+L +D +L L++QENY+ +P + + +
Sbjct: 533 FLS--GGIFKHTSKVTLSDKIELYFNDHELSHLMLQENYLKTQPDTLNSIVNLKQKNHEH 590
Query: 661 LSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERNF 719
L LI A+E+IS D+ + I QQ W L ++ SC+IPA + G G +
Sbjct: 591 LKLIENASEAISRSDLIDFMIHGPQQHWSLMPMHAVFSCVIPAFYVSG------FGTSQY 644
Query: 720 NRFGGWLGKNSTMGKNLRLLEDLHFH 745
+ F LG S K ++ L+ + H
Sbjct: 645 S-FTSVLGNISKANKLIKYLQSIQTH 669
>gi|46105398|ref|XP_380503.1| hypothetical protein FG00327.1 [Gibberella zeae PH-1]
Length = 1049
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 200/620 (32%), Positives = 307/620 (49%), Gaps = 78/620 (12%)
Query: 190 PHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCD 249
P G E+PEG +CL GL+FV +G L ++ R++ + L+KR+GG+V G S KT++++
Sbjct: 307 PASGSVELPEGEEECLSGLSFVFTGVLQTISRDDGQALVKRYGGKVVGQPSSKTSFVVLG 366
Query: 250 EDIAGAKSTKAKELGTPFLTEDGLFDMIR-----ASKPMKALAQAESKKSVE-------- 296
+D +K K + L + E+GLFD+IR A E KK+ E
Sbjct: 367 DDAGPSKLAKIQSLSIKTIDENGLFDLIRKLPAFGGGGKGAQKAQEKKKADEDKVRKQAA 426
Query: 297 -KVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTP 355
A +K AK +A AP+ K VA+P + T KY P
Sbjct: 427 EMEAEEKARKVEAEKAAKKAAAGGAPV---KAVAAPPVQ----------LLTSKYAPTQL 473
Query: 356 NEIVGNQQLVKQLHTWLAHW--NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTA 413
+ I GN+ V+++ +WL +W N+K+ +R G + E+A I+SG PG+GKTTA
Sbjct: 474 SHICGNKAQVEKIQSWLRNWPKNKKY---NFQRRG--ADGMGGERAIIVSGPPGIGKTTA 528
Query: 414 AKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL-------SANM 466
A L + G+ +E NASDSR K + N + ++++N +L N+
Sbjct: 529 AHLAATLEGYDVLESNASDSRSKKLVE----------NGVSDVMNNTSLLGYFAGDGKNV 578
Query: 467 DRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCS 526
D +K K VLIMDEVDGMSAGDRGG+ L K ++IP+I ICN+R K+K +
Sbjct: 579 DATKK-KIVLIMDEVDGMSAGDRGGVGALAKFCKKTEIPLILICNERKLPKMKPFDHAAF 637
Query: 527 DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVI 586
D+RF +P ++ R+M I + EGL++ ++ L + N DIR IN + L + +
Sbjct: 638 DIRFNRPTVDQVRSRIMTICHREGLKLPPTVVDALIEGSNKDIRQIINMISTAKLDQTSM 697
Query: 587 KYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLL 640
+D + + K + P+ K+ GG K ++++I+L +D + L+
Sbjct: 698 DFDQSKAMSKAWEKHVILKPWDICQKMLA--GGLFAPASKATLNDKIELYFNDHEFSYLM 755
Query: 641 IQENYINYRP-------SSAGRDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQS 692
IQENY+ +P S +K L L AAESISDGD+ + I QQW L +
Sbjct: 756 IQENYLRTKPMALTGKGYSQREHNLKALELFDNAAESISDGDLVDRMIHGPQQQWSLMPT 815
Query: 693 SSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKS 752
++ S + PA+ + GQ + F WLG NS G+ R L ++H H +S
Sbjct: 816 HAVFSTVRPASFIAGQLLG--------SNFTSWLGNNSKFGRLGRSLREIHSH--MRLRS 865
Query: 753 KLGRDTLRLDYFSLLLKQLT 772
+ +R Y L QL
Sbjct: 866 SGDHNEIRQQYLPALWTQLV 885
>gi|400600327|gb|EJP68001.1| replication factor RFC1 C terminal domain-containing protein
[Beauveria bassiana ARSEF 2860]
Length = 1026
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 188/610 (30%), Positives = 308/610 (50%), Gaps = 52/610 (8%)
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
G ++PEG +CL GL+FV +G L ++ R+E + L+KR+GG+VTG S KT++++ +D
Sbjct: 295 GSADIPEGEEECLSGLSFVFTGVLRTIGRDEGQALVKRYGGKVTGQPSSKTSFVVLGDDA 354
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIR-------ASKPMKALAQAESKKSVEKVAASLPKK 305
+K K K G + E+GLFD+IR + K + + + + + +
Sbjct: 355 GPSKLAKIKSFGIRTIDENGLFDLIRKLPAHGGSGKGAQKAQEKKKAEEEKIKQQIAEME 414
Query: 306 SPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLV 365
+ + + + + A P R Q T KY P N I GN+ V
Sbjct: 415 AEEKAKRAAEIKAAKAAASIPGAAPPPPRSDTPTQ----LLTSKYAPTQLNHICGNKGQV 470
Query: 366 KQLHTWLAHWNEKFLDTGTKRNGKKQ--NDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423
+++ WL +W + K N +K+ + E+A I+SG PG+GKTTAA L ++ G+
Sbjct: 471 EKIQAWLRNWPK-----AKKYNFQKRGADGMGGERAIIISGPPGIGKTTAAHLAAKLEGY 525
Query: 424 QAIEVNASDSRGK--ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEV 481
+E NASD+R K +A ++ + N S+ + + S ++ + K VLIMDEV
Sbjct: 526 DVLESNASDARSKRLVEAGVTDVM---NNTSLLGFFAGDGKSVDITKKK---IVLIMDEV 579
Query: 482 DGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
DGMS GDRGG+ + K ++IP+I ICN+R K+K + D+RF +P ++ R
Sbjct: 580 DGMSGGDRGGVGAMAKFCKKTEIPLILICNERRLPKMKPFDHVAFDVRFNRPTVDQVRSR 639
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD 601
+M I + EGL++ ++ L + N DIR IN + L + + YD + + K
Sbjct: 640 IMTICHREGLKLPPPVVDALIEGSNKDIRQIINMISTAKLDQTSMNYDQGKAMTKAWEKH 699
Query: 602 EDISPFTAVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAG- 654
+ P+ K+ G GG K ++++I+L +D D L+IQENY+ +P +
Sbjct: 700 VVLKPWDICQKMLG--GGLFAPASKATLNDKIELYFNDHDFSFLMIQENYLRTKPMALNG 757
Query: 655 ------RDEVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHG 707
+++K L L +AAESISDGD+ + I QQ W L + ++ S + PA+ + G
Sbjct: 758 KGYNKREEKLKTLELFDQAAESISDGDLVDRMIHGPQQHWSLMPTHAVFSTVRPASFIAG 817
Query: 708 QRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLL 767
Q + F +LG S GK R + ++H H KS + +R Y +L
Sbjct: 818 QLMG--------STFTSYLGNLSKTGKLGRYIREIHSH--MRLKSSGDHNEVRQQYMPIL 867
Query: 768 LKQLTEPLRV 777
KQL + L++
Sbjct: 868 WKQLIDKLQL 877
>gi|367003008|ref|XP_003686238.1| hypothetical protein TPHA_0F03230 [Tetrapisispora phaffii CBS 4417]
gi|357524538|emb|CCE63804.1| hypothetical protein TPHA_0F03230 [Tetrapisispora phaffii CBS 4417]
Length = 845
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 188/587 (32%), Positives = 302/587 (51%), Gaps = 25/587 (4%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
+ PEG +CL GLT V +G L ++ER AE++ +R+G +VT S+S KT++++ ++
Sbjct: 137 DFPEGQDNCLLGLTVVFTGVLPTMERGAAENIARRYGAKVTKSISGKTSFVVLGDEAGPK 196
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKST 315
K K ++L + EDG +I A K ++K N A+
Sbjct: 197 KVEKIRQLKVKAINEDGFRKLIAGMPADGGDGDAAEKARLKKQQEEARVLKEANEMAEEA 256
Query: 316 SAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHW 375
+ I++ + KR+ +Q L WT KY P N+I GN+ V +L WL +W
Sbjct: 257 EEKELKIKQARLSGDFVKREDLIREQDKL-WTVKYAPTNTNQICGNKSSVNKLKNWLINW 315
Query: 376 NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG 435
E + K G+ + + +AA+L G PG+GKTTAA L+ + LG+ +E NASD R
Sbjct: 316 -EASKASNFKSPGR--DGSGIFRAAMLYGPPGIGKTTAAHLIAKDLGYDILEQNASDVRS 372
Query: 436 KADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADL 495
K+ ++ G+ NA +V +++ K V++MDEVDGMS GDRGG+ L
Sbjct: 373 KS--LLNAGV--KNALDNMSVVGYFKNKDDVNDVNGKKFVIVMDEVDGMSGGDRGGVGIL 428
Query: 496 IASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNE 555
+ + P+I ICN+R K++ C D++FR+P + RLM IA E +++
Sbjct: 429 AQFCRKTSTPLILICNERNQPKMRPFDRVCLDVQFRRPDANSLKARLMTIAVREKFKLDP 488
Query: 556 IALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615
+++L GDIR IN L +S + I + +I + S K+ + PF V ++
Sbjct: 489 NVIDKLVQATRGDIRQIINLLSTISKTSKNIDHTNISEISKSWEKNIALKPFDIVHQMLS 548
Query: 616 ------FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAE 669
++++I L D D PL++QENY++ RPS +E L +A+AA+
Sbjct: 549 GRIYSDLGANTFTLNDKIALYFDDFDFTPLMVQENYLSTRPSVLKPNE-SHLEAVAQAAD 607
Query: 670 SISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGK 728
+IS GD+ IR ++Q W L ++ S ++P++ + GQ G NF GWLG+
Sbjct: 608 AISLGDLVERNIRSSEQLWGLLPLHAVLSSVLPSSKVAGQF----AGRVNFT---GWLGQ 660
Query: 729 NSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
NS K RLL++L +H S S + +LRL+Y S +L +P+
Sbjct: 661 NSKRNKYYRLLQELQYHTRLSTSS--NKISLRLEYMSTFKHRLLDPI 705
>gi|315050906|ref|XP_003174827.1| hypothetical protein MGYG_02357 [Arthroderma gypseum CBS 118893]
gi|311340142|gb|EFQ99344.1| hypothetical protein MGYG_02357 [Arthroderma gypseum CBS 118893]
Length = 1055
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 194/610 (31%), Positives = 316/610 (51%), Gaps = 45/610 (7%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
++P G P+CL GL+FV +G LDSL RE+ ++L+K+ GG+ + S KT+Y++ D
Sbjct: 304 DLPVGEPNCLAGLSFVFTGVLDSLGREQGQNLVKKFGGKSMSAPSSKTSYVVLGNDAGPK 363
Query: 256 KSTKAKELGTPFLTEDGLFDMIR-----ASKPMKALAQAESKKS----VEKVAASLPKKS 306
K ++ + E+GLF++IR AL AE KK+ ++++AA + ++
Sbjct: 364 KLETIQKYKLKTINEEGLFELIRKLPANGGDGKAALQYAEKKKAEEQKIKEMAAEIDRE- 422
Query: 307 PQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVK 366
+ A ++ A + T A KG+ + WT KY P + + I GN+ V+
Sbjct: 423 -EKKRAAASKASAPSVSNAGTKAKSTSDKGEAVDDR--LWTTKYAPTSLSMICGNKGTVE 479
Query: 367 QLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424
+L TWL +W+ + N KK ++ + + ++ G PG+GKTTAA LV ++ F
Sbjct: 480 KLQTWLRNWH-----ANARANFKKPGKDGSGTYRTVMIHGPPGIGKTTAAHLVAKLENFD 534
Query: 425 AIEVNASDSRGKADAKIS-KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG 483
+E NASD+R K + + +G+ + S++ S E + VLIMDEVDG
Sbjct: 535 IVETNASDTRSKKLLETTLRGV--LDTTSLQGYFSGEGKKVEPGKKN---LVLIMDEVDG 589
Query: 484 MSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLM 543
MSAGDRGG+ + A K ++IPII ICN+R K+K + +L FR+P ++I RL
Sbjct: 590 MSAGDRGGVGAVAAIAKKTRIPIILICNERRLPKMKPFDHVTFELPFRRPTAEQIRARLF 649
Query: 544 QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDED 603
I EG++++ L+ L + + DIR IN L + LS + + YD ++ + K
Sbjct: 650 TICYREGIKISPQVLDGLIEGTHADIRQVINMLSTIKLSTNNLDYDQGKEMSKAWEKHVI 709
Query: 604 ISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINYRP----SSAGR 655
+ P+ V K+ K ++++++L +D + L++QENY+ P S +G+
Sbjct: 710 LKPWDIVGKILSAQMFAPSSKATLNDKVELYFNDHEFSYLMLQENYLKTNPMAANSYSGK 769
Query: 656 D-EVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLE 713
+ + K L L +AAESISDGD+ + I QQW L + + S + PA+ M G T
Sbjct: 770 ERQYKLLELADKAAESISDGDLVDRMIHGSQQQWSLMPTHAAFSFVRPASFMAGNM-TDR 828
Query: 714 QGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTE 773
G F WLG NS GK R ++++ H+ R S R +R Y ++ +
Sbjct: 829 VG------FTSWLGNNSKQGKMARQVKEIQ-GHMRLRASG-DRHDVRQQYMPVIWNKTVR 880
Query: 774 PLRVLPKDEL 783
+ V KD +
Sbjct: 881 RMEVDGKDAV 890
>gi|302657732|ref|XP_003020581.1| hypothetical protein TRV_05323 [Trichophyton verrucosum HKI 0517]
gi|291184429|gb|EFE39963.1| hypothetical protein TRV_05323 [Trichophyton verrucosum HKI 0517]
Length = 1069
Score = 275 bits (703), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 191/613 (31%), Positives = 318/613 (51%), Gaps = 47/613 (7%)
Query: 194 EKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA 253
+ ++P G P+CL GL+FV +G LDSL RE+ ++L+K++GG+ + S KT+Y++ D
Sbjct: 315 DSDLPVGEPNCLAGLSFVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLGNDAG 374
Query: 254 GAKSTKAKELGTPFLTEDGLFDMIR----------ASKPMKALAQAESKKSVEKVAASLP 303
K ++ + E GLF++IR A++ +AE +K ++++AA +
Sbjct: 375 PKKLETIQKYKLKTINEGGLFELIRKLPANGGDGKAAQQYAEKKKAEEQK-IKEMAAEID 433
Query: 304 KKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQ 363
++ + SAP + K + KR+ + + WT KY P + + I GN+
Sbjct: 434 REEKKRAAESKASAPPSSGTGTKDKNASDKREAVDDR----LWTTKYAPTSLSMICGNKG 489
Query: 364 LVKQLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPGMGKTTAAKLVCQML 421
V++L TWL +W+ + N KK ++ + + ++ G PG+GKTTAA LV ++
Sbjct: 490 TVEKLQTWLRNWH-----ANARANFKKPGKDGSGTYRTVMIHGPPGIGKTTAAHLVAKLE 544
Query: 422 GFQAIEVNASDSRGKADAKIS-KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDE 480
F +E NASD+R K + + +G+ + S++ S E + VLI+DE
Sbjct: 545 NFDIVETNASDTRSKKLLETTLRGV--LDTTSLQGYFSGEGKKVEPGKKN---LVLIVDE 599
Query: 481 VDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK 540
VDGMSAGDRGG+ + A K ++IPII ICN+R K+K + +L FR+P ++I
Sbjct: 600 VDGMSAGDRGGVGAVAAIAKKTRIPIILICNERRLPKMKPFDHVTFELPFRRPTAEQIRA 659
Query: 541 RLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAK 600
RL I EG+++ L+ L + + DIR IN L + LS + + YD ++ + K
Sbjct: 660 RLFTICYREGIKIPPQVLDGLIEGTHADIRQVINMLSTIKLSANNLDYDQGKEMSKAWEK 719
Query: 601 DEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINYRP----SS 652
+ P+ V K+ K ++++++L +D + L++QENY+ P S
Sbjct: 720 HVILKPWDIVGKILSAQMFAPSSKATLNDKVELYFNDHEFSYLMLQENYLRTNPMAANSY 779
Query: 653 AGRD-EVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRE 710
+G++ + K L L +AAESISDGD+ + I QQW L + + S + PA+ M G
Sbjct: 780 SGKERQFKLLELADKAAESISDGDLVDRMIHGSQQQWSLMPTHAAFSFVRPASFMAGNM- 838
Query: 711 TLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQ 770
T G F WLG NS GK R ++++ H+ R S R +R Y ++ +
Sbjct: 839 TDRVG------FTSWLGNNSKQGKMARQVKEIQ-GHMRLRASG-DRHDIRQQYMPVIWNK 890
Query: 771 LTEPLRVLPKDEL 783
+ + V KD +
Sbjct: 891 TVKRMEVDGKDAV 903
>gi|408392832|gb|EKJ72146.1| hypothetical protein FPSE_07684 [Fusarium pseudograminearum CS3096]
Length = 1050
Score = 275 bits (702), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 193/609 (31%), Positives = 303/609 (49%), Gaps = 55/609 (9%)
Query: 190 PHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCD 249
P G E+PEG +CL GL+FV +G L ++ R++ + L+KR+GG+V G S KT++++
Sbjct: 307 PASGSVELPEGEEECLSGLSFVFTGVLQTISRDDGQALVKRYGGKVVGQPSSKTSFVVLG 366
Query: 250 EDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQN 309
+D +K K + L + E+GLFD+IR P ++K+ EK A K Q
Sbjct: 367 DDAGPSKLAKIQSLSIKTIDENGLFDLIR-KLPAFGGGGKGAQKAQEKKKADEDKVRKQA 425
Query: 310 IEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSS---LTWTEKYRPKTPNEIVGNQQLVK 366
E ++ + + A ++ T KY P + I GN+ V+
Sbjct: 426 AEMEAEEKARKVEAEKAAKKAAAAGGAPVKAVAAPPVQLLTSKYAPTQLSHICGNKAQVE 485
Query: 367 QLHTWLAHW--NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424
++ +WL +W N+K+ +R G + E+A I+SG PG+GKTTAA L + G+
Sbjct: 486 KIQSWLRNWPKNKKY---NFQRRG--ADGMGGERAIIVSGPPGIGKTTAAHLAATLEGYD 540
Query: 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL-------SANMDRSKHPKTVLI 477
+E NASDSR K + N + ++++N +L N+D +K K VLI
Sbjct: 541 VLESNASDSRSKKLVE----------NGVSDVMNNTSLLGYFAGDGKNVDATKK-KIVLI 589
Query: 478 MDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQE 537
MDEVDGMSAGDRGG+ L K ++IP+I ICN+R K+K + D+RF +P +
Sbjct: 590 MDEVDGMSAGDRGGVGALAKFCKKTEIPLILICNERKLPKMKPFDHAAFDIRFNRPTVDQ 649
Query: 538 IAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLS 597
+ R+M I + EGL++ ++ L + N DIR IN + L + + +D + +
Sbjct: 650 VRSRIMTICHREGLKLPPTVVDALIEGSNKDIRQIINMISTAKLDQTSMDFDQSKAMSKA 709
Query: 598 SAKDEDISPFTAVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLLIQENYINYRP- 650
K + P+ K+ GG K ++++I+L +D + L+IQENY+ +P
Sbjct: 710 WEKHVILKPWDICQKMLA--GGLFAPASKATLNDKIELYFNDHEFSYLMIQENYLRTKPM 767
Query: 651 ------SSAGRDEVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAA 703
S +K L L AAESISDGD+ + I QQW L + ++ S + PA+
Sbjct: 768 ALTGKGYSQREHNLKALELFDNAAESISDGDLVDRMIHGPQQQWSLMPTHAVFSTVRPAS 827
Query: 704 LMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDY 763
+ GQ + F WLG NS G+ R L ++H H +S + +R Y
Sbjct: 828 FIAGQLLG--------SNFTSWLGNNSKFGRLGRSLREIHSH--MRLRSSGDHNEIRQQY 877
Query: 764 FSLLLKQLT 772
L QL
Sbjct: 878 LPALWTQLV 886
>gi|302509032|ref|XP_003016476.1| hypothetical protein ARB_04765 [Arthroderma benhamiae CBS 112371]
gi|291180046|gb|EFE35831.1| hypothetical protein ARB_04765 [Arthroderma benhamiae CBS 112371]
Length = 1073
Score = 275 bits (702), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 193/616 (31%), Positives = 319/616 (51%), Gaps = 50/616 (8%)
Query: 194 EKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA 253
+ ++P G P+CL GL+FV +G LDSL RE+ ++L+K++GG+ + S KT+Y++ D
Sbjct: 316 DSDLPVGEPNCLAGLSFVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLGNDAG 375
Query: 254 GAKSTKAKELGTPFLTEDGLFDMIR----------ASKPMKALAQAESKKSVEKVAASLP 303
K ++ + E GLF++IR A++ +AE +K ++++AA +
Sbjct: 376 PKKLETIQKYKLKTINEGGLFELIRKLPANGGDGKAAQQYAEKKKAEEQK-IKEMAAEID 434
Query: 304 KKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQ 363
++ + SAP + K + KR+ + + WT KY P + + I GN+
Sbjct: 435 REEKKRAAESKASAPPSSGTATKDKNASDKREAVDDR----LWTTKYAPTSLSMICGNKG 490
Query: 364 LVKQLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPGMGKTTAAKLVCQML 421
V++L TWL +W+ + N KK ++ + + ++ G PG+GKTTAA LV ++
Sbjct: 491 TVEKLQTWLRNWH-----ANARANFKKPGKDGSGTYRTVMIHGPPGIGKTTAAHLVAKLE 545
Query: 422 GFQAIEVNASDSRGKADAKIS-KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDE 480
F +E NASD+R K + + +G+ + S++ S E + VLIMDE
Sbjct: 546 NFDIVETNASDTRSKKLLETTLRGV--LDTTSLQGYFSGEGKKVEPGKKN---LVLIMDE 600
Query: 481 VDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK 540
VDGMSAGDRGG+ + A K ++IPII ICN+R K+K + +L FR+P ++I
Sbjct: 601 VDGMSAGDRGGVGAVAAIAKKTRIPIILICNERRLPKMKPFDHVTFELPFRRPTAEQIRA 660
Query: 541 RLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAK 600
RL I EG+++ L+ L + + DIR IN L + LS + + YD ++ + K
Sbjct: 661 RLFTICYREGIKIPPQVLDGLIEGTHADIRQVINMLSTIKLSANNLDYDQGKEMSKAWEK 720
Query: 601 DEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINYRP----SS 652
+ P+ V K+ K ++++++L +D + L++QENY+ P S
Sbjct: 721 HVILKPWDIVGKILSAQMFAPSSKATLNDKVELYFNDHEFSYLMLQENYLRTNPMAANSY 780
Query: 653 AGRD-EVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRE 710
+G++ + K L L +AAESISDGD+ + I QQW L + + S + PA+ M G
Sbjct: 781 SGKERQFKLLELADKAAESISDGDLVDRMIHGSQQQWSLMPTHAAFSFVRPASFMAGNM- 839
Query: 711 TLEQGERNFNRFGGWLGKNSTMGKNL---RLLEDLHFHHLASRKSKLGRDTLRLDYFSLL 767
T G F WLG NS GK L R ++++ H+ R S R +R Y ++
Sbjct: 840 TDRVG------FTSWLGNNSKQGKKLLDPRQVKEIQ-GHMRLRASG-DRHDIRQQYMPVI 891
Query: 768 LKQLTEPLRVLPKDEL 783
+ + + V KD +
Sbjct: 892 WNKTVKRMEVDGKDAV 907
>gi|320582361|gb|EFW96578.1| Replication factor C subunit [Ogataea parapolymorpha DL-1]
Length = 804
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 210/697 (30%), Positives = 337/697 (48%), Gaps = 75/697 (10%)
Query: 126 GRAVAQKSVDIDDDEEEDVKKTES--PLKSSGRGRGGRGASGAPAVGRGRGGGRGG---- 179
G+A QK+ + D EE VKK P KS + + + +G + G G+
Sbjct: 9 GKAAVQKAELTESDNEEPVKKEAKVLPKKSPTKTKSTKPQAGRSSQPSQPGAGQTAQEIL 68
Query: 180 ------------------FMNFGERKD-----PPHKGEKEVPEGAPDCLGGLTFVISGTL 216
MNF + K P G++ +PEG P+CL GLT V +G L
Sbjct: 69 ETIPDADPKYLEVDPEMENMNFFQLKARTSEAPAPTGDRMLPEGRPNCLNGLTIVFTGIL 128
Query: 217 DSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDM 276
+++R+E + ++G +VT S+S KT+ ++ + K KE + E+G +
Sbjct: 129 PTIDRDECVRIASKYGAKVTKSISGKTSLVVIGHEAGPKKIKMIKEKKIKCIDEEGFIQL 188
Query: 277 IRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKG 336
++ K A S ++ + A K + +A + + R + +R G
Sbjct: 189 LQ-----KMPADGGSGEAAQIAKAK---KEEEERKAIEEAEKEEEENRKRQTQLKQERAG 240
Query: 337 QNIQ--------QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNG 388
Q Q + WT KY P +I GN+ V+ L +WL HW + + G
Sbjct: 241 QFSQPERPSDKPDTEKLWTVKYAPTDIKQICGNKGNVELLQSWLEHWFD------NAKTG 294
Query: 389 KKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS 448
K +A ++SG PG+GKTTAA +V + LGF IE NASD R K +++ + S
Sbjct: 295 FKGPGIHGYRAVMISGPPGIGKTTAAHIVAKSLGFDVIEKNASDVRSKK--LLNEQLRSS 352
Query: 449 NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIIC 508
+NS N+ + + + + V+IMDEVDGMS+GD GG A L + ++ P+I
Sbjct: 353 LSNSSVVGYFNQLKTHDPNNRR---IVMIMDEVDGMSSGDHGGGAQLSQFCRTTETPLIL 409
Query: 509 ICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGD 568
ICND+ K+++ C DL +R+P +E+ RLM IA+ EGL+++ +++L N D
Sbjct: 410 ICNDKSLPKMRTFDKTCYDLTWRRPTGKEMKSRLMTIAHREGLKLDPNIIDQLVAATNND 469
Query: 569 IRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF-GFNGG---KLRMD 624
IR IN + ++ + + Y++ Q + K+ + PF V KL G + G + +
Sbjct: 470 IRQIINIMSTVARTQKTLNYENSEQISKTWQKEVILKPFDIVGKLLSGASYGSHARYNLS 529
Query: 625 ERIDLSMSDPDLVPLLIQENYINYRPSS-----AGRDEVKRLSLIARAAESISDGDIFNV 679
E+I+L +D D PL+I ENY + PS A + ++ L L+ A+ IS+ D+ N
Sbjct: 530 EKINLYFNDMDFTPLMIHENYRSTTPSKLSGCPANKRNLRHLELLEEASNYISESDLVNQ 589
Query: 680 QIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRL 738
IR QQW L+ ++ S ++P + + G G F WLG+NS K R+
Sbjct: 590 LIRGGEQQWSLAPFHAVLSSVLPGSKVAG-------GMNGRTMFTSWLGQNSKKMKYDRI 642
Query: 739 LEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
L+DL +H +S K+ LRL Y L+K L++PL
Sbjct: 643 LQDLQYH--SSTKTMTNTQELRLTYIPFLIKMLSDPL 677
>gi|209876712|ref|XP_002139798.1| replication factor C subunit protein [Cryptosporidium muris RN66]
gi|209555404|gb|EEA05449.1| replication factor C subunit protein, putative [Cryptosporidium
muris RN66]
Length = 845
Score = 272 bits (695), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 188/571 (32%), Positives = 294/571 (51%), Gaps = 61/571 (10%)
Query: 197 VPEGAPDC-LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
+ E P+ L G + V++G + R + EDL+K GG++T +VS +T+YL IAG
Sbjct: 142 ITEKDPNLPLEGKSIVVTGLFEKKSRSDIEDLVKILGGKLTSAVSGRTSYL-----IAG- 195
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKST 315
++ EDG + SK A+++ S ++ P S +K T
Sbjct: 196 -----------YILEDGR-GITEGSKYKSAISKNIQILSEDEFINMFPIDS-----SKIT 238
Query: 316 SAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHW 375
K + +T+ + K ++ WT+KY+P +EI+GN +++++L TWL W
Sbjct: 239 REDKEKLNMSQTIENLKDYKSED-----KLWTDKYKPSNIDEILGNSEVIRKLVTWLNDW 293
Query: 376 NEKFLDTGTKRNGKK----------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA 425
++ G K+N K Q + +A +LSG PG+GKTT A LV + G+ A
Sbjct: 294 RSVIIE-GKKKNPPKATFSPGSRFPQIENINARAVLLSGPPGIGKTTTANLVAKECGYIA 352
Query: 426 IEVNASDSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG 483
IE+NASD R K+ + IGG N+ ++ + + VLIMDEVDG
Sbjct: 353 IEMNASDDRTKSVIEDLAESAIGGYTLTDFAHGNINK-FNSKYSENLNSNIVLIMDEVDG 411
Query: 484 MSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLM 543
+ DRGG A L I +K PIIC+CNDR ++K+++L + C DLRF +P K +I KR+
Sbjct: 412 LGGSDRGGTAALGKLILKTKWPIICLCNDRQNEKVRNLASKCYDLRFSRPLKSQIIKRIQ 471
Query: 544 QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDED 603
+I++ EGL + A++ L + V D+R +N+LQ M LS S +++ D++ + KD
Sbjct: 472 EISSKEGLNIEANAIDLLCESVGNDLRQILNELQLMRLSKSTLRFIDMKNEISKPVKDSQ 531
Query: 604 IS--PFTAVDKLF-GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPS--------- 651
++ F+A KL + +L + +RI++ D DL+PL IQENYI S
Sbjct: 532 VTLDIFSATKKLLTASDAHRLSISDRIEVFFIDFDLIPLFIQENYITAFSSQSSYYISAQ 591
Query: 652 SAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRET 711
S G K + I++ A ++ DI+N ++R N W L ++ +IP+ Q
Sbjct: 592 SKGNISYKNIDAISQIANLFAEADIYNSKLRSNNDWSLLSEIAINCAVIPSG-PQFQGSF 650
Query: 712 LEQGERNFNRFGGWLGKNSTMGKNLRLLEDL 742
L + E F WLGKNST KN RLL +L
Sbjct: 651 LARPE-----FPKWLGKNSTRNKNRRLLSEL 676
>gi|116205063|ref|XP_001228342.1| hypothetical protein CHGG_10415 [Chaetomium globosum CBS 148.51]
gi|88176543|gb|EAQ84011.1| hypothetical protein CHGG_10415 [Chaetomium globosum CBS 148.51]
Length = 1060
Score = 271 bits (693), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 197/634 (31%), Positives = 304/634 (47%), Gaps = 81/634 (12%)
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
G ++PEG DCL G +FV +G L ++ REE + L+KR+GG+VTG+ S KT++++ +D
Sbjct: 302 GAVDIPEGEDDCLVGKSFVFTGLLKTISREEGQALVKRYGGKVTGAPSSKTDFVVLGDDA 361
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEA 312
+K K KE G + E+GLF +I+ A S K EK K Q E
Sbjct: 362 GPSKLRKIKEHGIKTIDEEGLFYLIKTMP-----AHGGSGKGAEKA------KQKQEAEE 410
Query: 313 KSTSAPKAPIERMKTVASPAKRKGQNIQQS-------------SLTWTEKYRPKTPNEIV 359
K A +E+ + K + S WT KY P N+I
Sbjct: 411 KKIRDEAARMEKEEQARKAEAEKAAKKAAAARGAPPPAPTRVLSQLWTTKYAPTQLNQIC 470
Query: 360 GNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQ 419
GN+ V+++ WL W KR + +A I+SG PG+GKTTAA L +
Sbjct: 471 GNKANVERIQGWLDKWAMHRKYNFQKRGA---DGMGGYRAIIISGPPGIGKTTAAHLAAK 527
Query: 420 MLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA-------NMDRSKHP 472
+ G+ +E NASD+R K + N + ++++N +L +D K
Sbjct: 528 LAGYDVLESNASDTRSKKLVE----------NGVSDVLNNTSLMGYFAADGKQIDAGKK- 576
Query: 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRK 532
K VL+MDEVDGMSAGDRGG+ L K +++P+I ICN+R K+K + D++F++
Sbjct: 577 KIVLVMDEVDGMSAGDRGGVGALAKFCKKTEVPLILICNERRLPKMKPFDHVAFDVKFQR 636
Query: 533 PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIR 592
P +I R+M I + EGL++ + L + DIR IN L L + + +D +
Sbjct: 637 PTVDQIRSRIMTICHREGLKMPPQVINALIEGSGKDIRQIINMLSTAKLDQTTMDFDQSK 696
Query: 593 QRLLSSAKDEDISPFTAVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLLIQENYI 646
+ K + P+ K+ G GG K ++++I+L D + L+IQENY+
Sbjct: 697 AMTKAWEKHVVLKPWDICQKMIG--GGLFGPASKATLNDKIELYFHDHEFSFLMIQENYL 754
Query: 647 NYRPSS------------------AGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQ-W 687
+P++ A +K L L+ +AAESISDGD+ + I QQ W
Sbjct: 755 RSKPAALTGKNYNARAALTGKNYNARIQNLKYLELVDQAAESISDGDLVDRMIHGPQQHW 814
Query: 688 QLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHL 747
L + ++ S + PA+ + G + G+ F WLG NS GK R + ++ H+
Sbjct: 815 SLMPTHAVFSTVRPASFIAG----MFTGQTAFT---SWLGNNSKTGKLGRFVREIQ-SHM 866
Query: 748 ASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKD 781
R S + +R Y +L QL + L KD
Sbjct: 867 RLRTSG-DHNEIRQQYLPVLWHQLVKRLEAEGKD 899
>gi|361124088|gb|EHK96209.1| putative Replication factor C subunit 1 [Glarea lozoyensis 74030]
Length = 1061
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 190/611 (31%), Positives = 307/611 (50%), Gaps = 58/611 (9%)
Query: 195 KEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAG 254
KE+P GA +CL G++FV +G L++L R++ + L+KR+GG+VT + S KT++++ D
Sbjct: 312 KEMPVGAENCLAGMSFVFTGLLETLSRDDGQALVKRYGGKVTTAPSGKTSFVVLGSDAGP 371
Query: 255 AKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPK---------- 304
+K K EL + EDGLF +IR QA ++K +EK A + K
Sbjct: 372 SKLRKIHELKIKTIDEDGLFSIIRELPANGGDGQA-AEKHMEKKTAEMEKIKREAEEMEK 430
Query: 305 -KSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQ 363
+ + +EA+ + E++ + SSL WT KY P N+I GN+
Sbjct: 431 EERKKALEAEKD---RKTAEKLAAATGSRAPPPRAPPPSSLLWTSKYAPTAINQICGNKG 487
Query: 364 LVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423
V+++ WL W + +K K + +A ++ G PG+GKTTAA L ++ G+
Sbjct: 488 QVEKIQKWLKGWAQAHKYEFSK---KGPDGLGGYRAIMIHGPPGIGKTTAAHLAAKLAGY 544
Query: 424 QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHP------KTVLI 477
+E NASD+R K + + E++SN +L P VLI
Sbjct: 545 DVLENNASDTRSKKMVE----------TGLNEVLSNNSLRGYYAGDGKPVDATKKNIVLI 594
Query: 478 MDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQE 537
MDEVDGMSAGDRGG+ + K + IP+I ICN+ QK+K + + F++P
Sbjct: 595 MDEVDGMSAGDRGGVGAMAKICKKTDIPMILICNEFNQQKMKPFEHVTFPIPFKRPTVDM 654
Query: 538 IAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLS 597
+ R+ I + EG+++ ++ L + N DIR IN + L S + +DD + +
Sbjct: 655 VRSRIATICHREGMKLPMNVIDALIEGSNKDIRQIINMISTAKLDESSMDFDDTKAMTKA 714
Query: 598 SAKDEDISPFTAVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLLIQENYINYRP- 650
K + P+ K+ G GG K ++++++L +D + L++QENY+N +P
Sbjct: 715 WEKSVVLKPWDICHKILG--GGMFAPSSKATLNDKLELYFNDHEKSFLMVQENYLNQKPM 772
Query: 651 ---SSAGRDE-VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALM 705
S GR + +K L L+ +AAESISDGD+ + I QQW L + + S + PA+ +
Sbjct: 773 LASSYQGRQQHLKTLQLMDQAAESISDGDLVDRMIHGSQQQWSLMPTHGIFSMVRPASFI 832
Query: 706 HGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFS 765
G + +F WLG NS GK R ++++ H+ R S R +R Y
Sbjct: 833 --------SGAGSGTKFTTWLGNNSKQGKLTRYVKEIQ-SHMRLRTSG-DRHEIRQQYLP 882
Query: 766 LLLKQLTEPLR 776
+L +L + L+
Sbjct: 883 VLWTRLIDRLQ 893
>gi|327303742|ref|XP_003236563.1| chromosome transmission fidelity factor [Trichophyton rubrum CBS
118892]
gi|326461905|gb|EGD87358.1| chromosome transmission fidelity factor [Trichophyton rubrum CBS
118892]
Length = 1058
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 192/611 (31%), Positives = 317/611 (51%), Gaps = 47/611 (7%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
++P G P+CL GL+FV +G LDSL RE+ ++L+K++GG+ + S KT+Y++ D
Sbjct: 307 DLPVGEPNCLAGLSFVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLGNDAGPK 366
Query: 256 KSTKAKELGTPFLTEDGLFDMIR----------ASKPMKALAQAESKKSVEKVAASLPKK 305
K ++ + E GLF++IR A++ +AE +K + ++AA + ++
Sbjct: 367 KLETIQKYKLRTINEGGLFELIRKLPANGGDGKAAQQYAEKKKAEEQK-IREMAAEIDRE 425
Query: 306 SPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLV 365
+ SAP + K ++ KR+ + + WT KY P + + I GN+ V
Sbjct: 426 EKKRAAESKASAPPSSSTGTKDKSASDKREAVDDR----LWTTKYAPTSLSMICGNKGTV 481
Query: 366 KQLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423
++L TWL +W+ + N KK ++ + + ++ G PG+GKTTAA LV ++ F
Sbjct: 482 EKLQTWLRNWH-----ANARANFKKPGKDGSGTYRTVMIHGPPGIGKTTAAHLVAKLENF 536
Query: 424 QAIEVNASDSRGKADAKIS-KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVD 482
+E NASD+R K + + +G+ + S++ S E + VLIMDEVD
Sbjct: 537 DIVETNASDTRSKKLLETTLRGV--LDTTSLQGYFSGEGKKVEPGKKN---LVLIMDEVD 591
Query: 483 GMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRL 542
GMSAGDRGG+ + A K ++IPII ICN+R K+K + +L FR+P ++I RL
Sbjct: 592 GMSAGDRGGVGAVAAIAKKTRIPIILICNERRLPKMKPFDHVTFELPFRRPTAEQIRARL 651
Query: 543 MQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDE 602
I EG+++ L+ L + + DIR IN L + LS + + YD ++ + K
Sbjct: 652 FTICYREGIKIPPQVLDGLIEGTHADIRQVINMLSTIKLSANNLDYDQGKEMSKAWEKHV 711
Query: 603 DISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPDLVPLLIQENYINYRP----SSAG 654
+ P+ V K+ K ++++++L +D + L++QENY+ P S +G
Sbjct: 712 ILKPWDIVGKILSAQMFAPSSKATLNDKVELYFNDHEFSYLMLQENYLRTNPMAANSYSG 771
Query: 655 RD-EVKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETL 712
++ + K L L +AAESISDGD+ + I QQW L + + S + PA+ M G T
Sbjct: 772 KERQFKLLELADKAAESISDGDLVDRMIHGSQQQWSLMPTHAAFSFVRPASFMAGNM-TD 830
Query: 713 EQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLT 772
G F WLG NS GK R ++++ H+ R S R +R Y ++ +
Sbjct: 831 RVG------FTSWLGNNSKQGKMARQVKEIQ-GHMRLRASG-DRHDIRQQYMPVIWNKTV 882
Query: 773 EPLRVLPKDEL 783
+ + V KD +
Sbjct: 883 KRMEVDGKDSV 893
>gi|342879796|gb|EGU81031.1| hypothetical protein FOXB_08440 [Fusarium oxysporum Fo5176]
Length = 1058
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 188/605 (31%), Positives = 303/605 (50%), Gaps = 51/605 (8%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
++PEGA +CL GL+FV +G L ++ R+E + L+KR+GG+V G S KT++++ ED +
Sbjct: 296 DLPEGADECLTGLSFVFTGVLQTISRDEGQALVKRYGGKVVGQPSSKTSFVVLGEDAGPS 355
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKST 315
K K K +G + E+GLF++IR P ++K+ EK A K Q E ++
Sbjct: 356 KLAKIKSIGIKTIDENGLFELIR-KLPAFGGGGKGAQKAQEKKKAEEDKVKKQVAEMEAE 414
Query: 316 SAPKAPIERMKTVASP---AKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWL 372
+ + T KY P I GN+ V+++ WL
Sbjct: 415 EKARKAEAAKAAKKAAAAGGPPVKAAAAPPVQLLTSKYAPTQLGHICGNKAQVEKIQNWL 474
Query: 373 AHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432
+W K +R G + E+A I+SG PG+GKTTAA L ++ G+ +E NASD
Sbjct: 475 RNW-PKHKKYNFQRRG--ADGMGGERAIIISGPPGIGKTTAAHLAAKLEGYDVLESNASD 531
Query: 433 SRGKADAKISKGIGGSNANSIKELVSNEAL-------SANMDRSKHPKTVLIMDEVDGMS 485
+R K + N + ++++N +L ++D +K K VLIMDEVDGMS
Sbjct: 532 TRSKKLVE----------NGVSDVMNNTSLLGYFAGDGKDVDATKK-KIVLIMDEVDGMS 580
Query: 486 AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQI 545
AGDRGG+ L K +++P+I ICN+R K+K + D+RF +P ++ R+M I
Sbjct: 581 AGDRGGVGALAKFCKKTQVPLILICNERRLPKMKPFDHVAFDIRFNRPTVDQVRSRVMTI 640
Query: 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDIS 605
+ EGL++ ++ L + N DIR IN + L + + +D + + K +
Sbjct: 641 CHREGLKLPPSVVDALIEGSNKDIRQIINMISTAKLDQTSMDFDQSKAMSKAWEKHVILK 700
Query: 606 PFTAVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLLIQENYINYRP---SSAGRD 656
P+ K+ GG K ++++I+L +D + L+IQENY+ +P + G +
Sbjct: 701 PWDICQKMLA--GGLFTPASKSTLNDKIELYFNDHEFSYLMIQENYLRTKPMALNGKGYN 758
Query: 657 E----VKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRET 711
+ +K L L AAESISDGD+ + I QQ W L + ++ S + PA+ + GQ
Sbjct: 759 QRELKLKALELFDNAAESISDGDLVDRMIHGPQQHWSLMPTHAVFSTVRPASFIAGQLMG 818
Query: 712 LEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQL 771
+ F WLG NS G+ R + ++H H +S + +R Y +L QL
Sbjct: 819 --------SNFTSWLGNNSKYGRLGRSIREVHSH--MRLRSSGDHNEIRQQYLPILWTQL 868
Query: 772 TEPLR 776
+ L+
Sbjct: 869 VDRLQ 873
>gi|11999114|gb|AAG43050.1|AF139827_1 replication factor C subunit 1 [Plasmodium falciparum]
Length = 904
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 191/557 (34%), Positives = 274/557 (49%), Gaps = 51/557 (9%)
Query: 210 FVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA-------GAKSTKAKE 262
FVI+G + R+E + IK HGG V +VS KTNYL+ E + G K TKA E
Sbjct: 218 FVITGVFKNFTRDELQSKIKEHGGSVMTAVSTKTNYLVHGEYLEDGRLFNEGRKYTKAFE 277
Query: 263 LGTPFLTEDGLFDMIRASK--PMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKA 320
L + + + K P Q K + K N E K +
Sbjct: 278 LQQQNKSNIKILNEEELLKLLPQTDQTQENDKTYASDTIKTENKDKNYNYEKKDKNY--- 334
Query: 321 PIERMKTVASPAKRKGQNIQQSSLT--WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK 378
+ K+ N Q L W EKYRPK NE+VGN Q V +L WLA W E
Sbjct: 335 ---------NYEKKDTHNTQNEILNQLWVEKYRPKNLNELVGNNQNVIKLQNWLASW-ED 384
Query: 379 FLDTGTKRNGKKQNDASAE----KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434
G K+ +K E + A+LSG G+GKTT AK+V + G+ IE NASD R
Sbjct: 385 VCIKGIKKPAQKTFRGIFENVNARCALLSGPAGIGKTTTAKIVSEASGYNVIEFNASDER 444
Query: 435 GKADA-KISK-GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGI 492
KA KIS+ GG + S ++ K KT +IMDEVDGMS+GD+GG
Sbjct: 445 NKAAVEKISEMATGGYSIMS-------------LNNRKLTKTCIIMDEVDGMSSGDKGGS 491
Query: 493 ADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLE 552
++ I+ +K PIICICNDR + K+++L N C DL+F P+K + KRL++I EG+
Sbjct: 492 TAILKLIEKTKCPIICICNDRQNNKMRTLANKCYDLKFSMPQKNSVVKRLLEICKKEGIM 551
Query: 553 VNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDED--ISPFTAV 610
+ ALE L + GDIR +N LQ +S + + I++ D+++ L +S K+ +PF
Sbjct: 552 MEPNALELLWESTCGDIRQMLNTLQLLSKTYTRIQFLDLKKELNNSNKNIQSLANPFEIT 611
Query: 611 DKLFGFN-GGKLRMDERIDLSMSDPDLVPLLIQENYIN-YRPSSAGRDEVKRLSLIARAA 668
KL FN KL + E +DL D +L+P I ENY N + + + + ++ ++ A
Sbjct: 612 LKLLNFNESSKLNIREIMDLFFVDYELIPYFISENYTNVFNETDKSSASLNKWNVFSQIA 671
Query: 669 ESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGK 728
+S D ++ N + L ++ SC+ P + + + G N F GK
Sbjct: 672 HDLSLADKIKYNMKSNMDFALLPHFAILSCVCPVMRIKILK-SFMSGRVN---FPTAFGK 727
Query: 729 NSTMGKNLRLLEDLHFH 745
ST KN RLL +L F+
Sbjct: 728 ISTFNKNKRLLNELCFN 744
>gi|124801451|ref|XP_001349697.1| replication factor C subunit 1, putative [Plasmodium falciparum
3D7]
gi|3845304|gb|AAC71968.1| replication factor C subunit 1, putative [Plasmodium falciparum
3D7]
Length = 904
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 191/557 (34%), Positives = 274/557 (49%), Gaps = 51/557 (9%)
Query: 210 FVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA-------GAKSTKAKE 262
FVI+G + R+E + IK HGG V +VS KTNYL+ E + G K TKA E
Sbjct: 218 FVITGVFKNFTRDELQSKIKEHGGSVMTAVSTKTNYLVHGEYLEDGRLFNEGRKYTKAFE 277
Query: 263 LGTPFLTEDGLFDMIRASK--PMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKA 320
L + + + K P Q K + K N E K +
Sbjct: 278 LQQQNKSNIKILNEEELLKLLPQTDQTQENDKTYASDTIKTENKDKNYNYEKKDKNY--- 334
Query: 321 PIERMKTVASPAKRKGQNIQQSSLT--WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK 378
+ K+ N Q L W EKYRPK NE+VGN Q V +L WLA W E
Sbjct: 335 ---------NYEKKDTHNTQNEILNQLWVEKYRPKNLNELVGNNQNVIKLQNWLASW-ED 384
Query: 379 FLDTGTKRNGKKQNDASAE----KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434
G K+ +K E + A+LSG G+GKTT AK+V + G+ IE NASD R
Sbjct: 385 VCIKGIKKPAQKTFRGIFENVNARCALLSGPAGIGKTTTAKIVSEASGYNVIEFNASDER 444
Query: 435 GKADA-KISK-GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGI 492
KA KIS+ GG + S ++ K KT +IMDEVDGMS+GD+GG
Sbjct: 445 NKAAVEKISEMATGGYSIMS-------------LNNRKLTKTCIIMDEVDGMSSGDKGGS 491
Query: 493 ADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLE 552
++ I+ +K PIICICNDR + K+++L N C DL+F P+K + KRL++I EG+
Sbjct: 492 TAILKLIEKTKCPIICICNDRQNNKMRTLANKCYDLKFSMPQKNSVVKRLLEICKKEGIM 551
Query: 553 VNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDED--ISPFTAV 610
+ ALE L + GDIR +N LQ +S + + I++ D+++ L +S K+ +PF
Sbjct: 552 MEPNALELLWESTCGDIRQMLNTLQLLSKTYTRIQFLDLKKELNNSNKNIQSLANPFEIT 611
Query: 611 DKLFGFN-GGKLRMDERIDLSMSDPDLVPLLIQENYIN-YRPSSAGRDEVKRLSLIARAA 668
KL FN KL + E +DL D +L+P I ENY N + + + + ++ ++ A
Sbjct: 612 LKLLNFNESSKLNIREIMDLFFVDYELIPYFISENYTNVFNETDKSSASLNKWNVFSQIA 671
Query: 669 ESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGK 728
+S D ++ N + L ++ SC+ P + + + G N F GK
Sbjct: 672 HDLSLADKIKYNMKSNMDFALLPHFAILSCVCPVMRIKILK-SFMSGRVN---FPTAFGK 727
Query: 729 NSTMGKNLRLLEDLHFH 745
ST KN RLL +L F+
Sbjct: 728 ISTFNKNKRLLNELCFN 744
>gi|294932355|ref|XP_002780231.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239890153|gb|EER12026.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 829
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 202/609 (33%), Positives = 295/609 (48%), Gaps = 70/609 (11%)
Query: 190 PHKGEKEVPEGAPD--CLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLL 247
P K K P D G T V +G L+ LER+ A K G +VT +VS +T YL+
Sbjct: 146 PRKSAKSPPPAVTDEKPFNGKTLVFTGNLERLERDLAVTKAKLAGAKVTTAVSGRTTYLV 205
Query: 248 CDEDIA-------GAKSTKAKEL------GTPFLTEDGLFDMIRASKPMKALAQAESKKS 294
+ G+K K +EL G L E + ++ + MKA +
Sbjct: 206 VGSVLEDGRPIEEGSKFKKTQELRAAGKPGPSLLQESEFIEKLQKAGLMKA-----GNVA 260
Query: 295 VEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKT 354
VE+V ++ P + +S G +++ + WTEKY+P+T
Sbjct: 261 VEQVKVTVDAIKPTSSRKDGSS-------------------GGDVK--GILWTEKYKPRT 299
Query: 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKR----NGKKQNDASAEKAAILSGSPGMGK 410
++VGN + +L TWL W EK G K+ G+ + KA ++SG PG+GK
Sbjct: 300 LKDLVGNNAPITKLRTWLQDW-EKVHVHGQKKPVTFRGRGVPENVNAKAVLVSGPPGIGK 358
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSK 470
TTA +LV + LG+ +E NASD R KA N L +N + N +
Sbjct: 359 TTACRLVARELGYMPMEFNASDQRNKATVD----------NLASGLATNAVIGQNYSLKQ 408
Query: 471 HPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRF 530
P L+MDEVDGMS GDRGG A LI IK SK+P++CICNDR S K++SL N C D+RF
Sbjct: 409 KP--CLVMDEVDGMSGGDRGGGAALIQLIKKSKMPVMCICNDRMSTKVRSLANSCYDIRF 466
Query: 531 RKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDD 590
KP + ++R+ IA +EG+ V+ A+ LA+++ GD+R IN L+ +SL+ K
Sbjct: 467 TKPTGAQCSQRVAAIAKSEGVHVDTDAMAMLAEQLGGDMRQIINNLEMLSLAAESGKAAT 526
Query: 591 IRQRLLSSAKDED--ISPFTAVDKLFGFNGG-KLRMDERIDLSMSDPDLVPLLIQENYIN 647
+ KD +SPF L +L ER D+ D DL+PLL+Q+NYI
Sbjct: 527 VSVGTRGGGKDVQNMLSPFDVCKTLLTSTMARRLSFKERSDMYYVDYDLIPLLMQQNYIK 586
Query: 648 YRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHG 707
+ G + L+ IA+AA+ +S+ D+ + +R Q+W L S + S + P+ +
Sbjct: 587 CVENVVGPASTRALAGIAKAADLMSEADMISTAVRSGQEWTLLPSHCVLSTVGPSFYCN- 645
Query: 708 QRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLL 767
F F WLG NST KN RL+ +L L+ S RD Y LL
Sbjct: 646 -------NFIGFPEFPQWLGANSTTTKNARLVRELR-GMLSQTTSMSARDLRTSGYMDLL 697
Query: 768 LKQLTEPLR 776
+ +PL+
Sbjct: 698 YDSILQPLK 706
>gi|426198662|gb|EKV48588.1| hypothetical protein AGABI2DRAFT_203506 [Agaricus bisporus var.
bisporus H97]
Length = 728
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 201/598 (33%), Positives = 308/598 (51%), Gaps = 39/598 (6%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P G K+VP+GAP+CL GL+FV +G L S REEA DL KR GGRV S KT++++
Sbjct: 19 PSAPGSKQVPDGAPNCLLGLSFVFTGELSSFSREEAVDLAKRFGGRVVLQPSSKTDFVVL 78
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM-KALAQAESKKSVEKVAASLPKKSP 307
+D AK K+ L+ED ++I + + A++KK +EK + +K+
Sbjct: 79 GDDAGPAKLAAIKKHSLKTLSEDEFLNLIATREGADEGGLDAKTKKKLEKEQQEI-RKAA 137
Query: 308 QNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQ 367
+ +E + S+ + ++ +IQ WT +Y P++ EI GN+ V++
Sbjct: 138 KEMEKRENSSSQVQLD-------------PSIQ----LWTTRYAPQSLKEICGNKGQVEK 180
Query: 368 LHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
L WL W L +G K+ GK + + +++G PG+GKTT+A L ++ GF IE
Sbjct: 181 LLQWLNDWPSS-LKSGFKKPGKI--GMNIFRGVLITGPPGIGKTTSAHLCAKLAGFTPIE 237
Query: 428 VNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG 487
+NASD+R K K+ + N S+ + + ++ KT LIMDEVDGMSAG
Sbjct: 238 LNASDTRSK---KLVENGMNINNTSLDGFIHGAGSTNSVGVPITGKTCLIMDEVDGMSAG 294
Query: 488 DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
DRGG+ L A IK SKIPIICI NDR +QKLK L++ L F +P+ Q I R++ I
Sbjct: 295 DRGGVGALNAIIKKSKIPIICIANDRGAQKLKPLMSTTFSLNFSRPQAQMIRSRILSIIF 354
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPF 607
EG++V +++L DIR +N L LS + +D+ + + + K ++PF
Sbjct: 355 KEGMKVPANVVDQLIQGSQSDIRQVLNMLSTWKLSSDSMDFDESKSLVKMNEKYAIMTPF 414
Query: 608 TAVDKLFG---FNG-GKLRMDERIDLSMSDPDLVPLLIQENYINYRPS-----SAGRDEV 658
K+ G F+ + + ++++L D VPL IQENY+ +P+ E+
Sbjct: 415 DITSKILGPYLFSSTARETLGDKMELYFQDHSFVPLFIQENYLKSQPARVRNMDGPEKEL 474
Query: 659 KRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGER 717
K L L+ +A+ SISDGD+ + I Q W L ++ S + PA+ ++G + G
Sbjct: 475 KHLQLMEQASASISDGDLVDSLIHGPEQHWGLMPLHAVCSTVRPASCLYG--SGVHFGGP 532
Query: 718 NFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
N F WLG+NS K R L D+ S + +R Y L + PL
Sbjct: 533 NSMSFPQWLGQNSKKNKLARQLADVQVRMRLKVSSD--KAEIRQSYVPALFPYIVRPL 588
>gi|326437790|gb|EGD83360.1| hypothetical protein PTSG_03969 [Salpingoeca sp. ATCC 50818]
Length = 1046
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 201/606 (33%), Positives = 298/606 (49%), Gaps = 54/606 (8%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
PP+ G+K +P GA +CLGGL FV++G LDS+ER+ AE LIK HGG V SVS + NY++
Sbjct: 322 PPNLGQKPLPSGAQNCLGGLKFVLTGVLDSIERDTAERLIKDHGGAVQKSVSGRVNYIVA 381
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRA--SKPMKAL--AQAESKKSVEKVAASLPK 304
+ +K KA+EL + EDGLFD+IR KP + + K S
Sbjct: 382 GIEPGPSKMKKAEELKLNVIDEDGLFDLIRTLPEKPFDDITTGGKKGGKKATATKKSATT 441
Query: 305 KSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSL--TWTEKYRPKTPNEIVGN- 361
+ + S+S+ T +SP QS++ WT KY PK+ +IVG
Sbjct: 442 SAALKASSSSSSSAAGAKRATATASSPPP-------QSAVGDLWTVKYAPKSMEKIVGQS 494
Query: 362 --QQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK-AAILSGSPGMGKTTAAKLVC 418
+ K+L WL W++ K N +ND +K A+L G PG+GKTT AKLVC
Sbjct: 495 GARSNAKKLKAWLESWHQHL---PRKNNKPTKNDTGFDKRCALLVGPPGIGKTTTAKLVC 551
Query: 419 QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478
+ G++ IE+NASD+R SK + + + + + + K +I
Sbjct: 552 EACGYEPIELNASDAR-------SKKLLEAQIGPLTRNCTMTQFYGTATKPRATKVAVIF 604
Query: 479 DEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQE 537
DEVDGM+ DRGG+ +++ IK +K+PIICI ND QKL+ L + L FRK + ++
Sbjct: 605 DEVDGMAGNEDRGGVGEIMKLIKTTKMPIICIAND-VPQKLRRLRDVSFHLPFRKLQTKQ 663
Query: 538 IAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL-SLSVIKYDDIRQRLL 596
I +M +A EGL +N I L+ + + NGDIR +N + S + + ++ DI R +
Sbjct: 664 IRSAMMSVAFKEGLSLNPIVLDRIIEGANGDIRQILNNMYMWSRDNANFVERQDIIDRDI 723
Query: 597 SSA-KDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGR 655
+A K +P+ + LF + R E + D +PL +QENY+ P
Sbjct: 724 KNATKYTKKTPWDCL-PLFFRAAQRPRGYELQEAFFQDYSAMPLFMQENYLRCAPHGKS- 781
Query: 656 DEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALM----HGQRET 711
V LS IA AA++IS+ ++ + N + SCI P +M HG+ E
Sbjct: 782 GPVDVLSTIADAADAISEAELVGNFMMANSAFSALPVYGYMSCIRPGFIMRGSLHGRIE- 840
Query: 712 LEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDT--LRLDYFSLLLK 769
F W G NS K+ R +L H + + DT +RL Y L
Sbjct: 841 ----------FSSWFGNNSKRTKSRRQCSELQQHM----RKDISADTTDMRLSYVPYLRA 886
Query: 770 QLTEPL 775
Q+ +PL
Sbjct: 887 QIMQPL 892
>gi|190345075|gb|EDK36893.2| hypothetical protein PGUG_00991 [Meyerozyma guilliermondii ATCC
6260]
Length = 708
Score = 269 bits (687), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 187/597 (31%), Positives = 302/597 (50%), Gaps = 58/597 (9%)
Query: 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKE 262
+CL GLT V +G L +L+R++AE L K++G +VT ++S KT+ ++ ++ +K K K
Sbjct: 10 NCLSGLTIVFTGVLPNLDRDQAEGLAKQYGAKVTKAISGKTSLVVLGDEAGPSKVQKIKA 69
Query: 263 LGTPFLTEDGLFDMIR----------ASKPMKALAQAESKKSVEKVAASLPKKSPQNIEA 312
+TE+ +++R ++ K E +K E V ++ Q +
Sbjct: 70 NKIKAITEESFLELLRRMPAEGGNSESALRAKEKRDEEERKLKEAVEREEREEREQAAKK 129
Query: 313 KSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWL 372
TS+ K S Q S+ WT KY PK +++ GN+ + +L +WL
Sbjct: 130 AKTSSVKNE--------SSQNTPSQPTTSSADLWTVKYAPKDTSQLCGNKGQINKLQSWL 181
Query: 373 AHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432
A W + +G K G + + +A ++SG PG+GKT+AA LV LG+ +E NASD
Sbjct: 182 ASWFDN-AKSGFKNPG--SDGSGVFRACLISGPPGIGKTSAAHLVAHNLGYDVLEKNASD 238
Query: 433 SRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTV------LIMDEVDGMSA 486
R SK + SN +K ++SN ++ +V +IMDEVDGMS+
Sbjct: 239 VR-------SKSLLNSN---LKSVLSNTSVVGFFKHQHDQASVNDRRFCIIMDEVDGMSS 288
Query: 487 GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIA 546
GD GG L A +I+ +P+I ICND+ K+++ DL FR+P + E+ RLM IA
Sbjct: 289 GDHGGAGALSAFCRITSMPLILICNDKSLPKMRTFDRVTLDLPFRRPTENEVRSRLMTIA 348
Query: 547 NAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISP 606
E ++++ + +L DIR I L +S + I +++ + + K + P
Sbjct: 349 LREKIKLDPTVIGQLVQATGNDIRQMITMLATVSRTQKTIGHNESKDMAKAWQKQAILKP 408
Query: 607 FTAVDKLFGFNGGKLR-------MDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
F +L G++ ++++IDL +D D PL+IQENY++ RP++ +
Sbjct: 409 FEITARLL---SGQIHNPNANHSLNDKIDLYFNDIDFTPLMIQENYLSTRPTNVTSTK-N 464
Query: 660 RLSLIARAAESISDGDIFNVQIRR-NQQWQLSQSSSLASCIIPAALMHGQRETLEQGERN 718
L +A AA+ IS+ DI N IR QQW L ++ S + PA+ + GQ +
Sbjct: 465 HLERVASAADDISESDIINSLIRSGQQQWSLLPFHAVMSSVKPASSVAGQVTS------R 518
Query: 719 FNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
N F GWLG+NS K RLL+++ +H ++ + LRLDY + L +LT PL
Sbjct: 519 IN-FAGWLGQNSKAMKYQRLLQEIQYH--TRLRTSTDKMQLRLDYLAALQHKLTTPL 572
>gi|195054401|ref|XP_001994113.1| GH23049 [Drosophila grimshawi]
gi|193895983|gb|EDV94849.1| GH23049 [Drosophila grimshawi]
Length = 1008
Score = 268 bits (686), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 263/484 (54%), Gaps = 48/484 (9%)
Query: 311 EAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLT----WTEKYRPKTPNEIVGNQ---Q 363
E +S+ +PK E++ + K + N S+++ W +KY+P + EIVG
Sbjct: 408 EKESSVSPKIKQEKLDSAMHVPKMESNNKHVSAISENMAWVDKYKPCSIKEIVGQAGPAS 467
Query: 364 LVKQLHTWLAHWNEKFLDTGTKRNGKKQN------DASAEKAAILSGSPGMGKTTAAKLV 417
V +L WLA W +++ K+ ++ N D S KAA+LSG PG+GKTT A LV
Sbjct: 468 NVNKLMNWLAKW---YVNHDGKKKPQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTASLV 524
Query: 418 CQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMD---RSKHPKT 474
Q LGF A+E NASD+R K K + L+ N++L + ++ K
Sbjct: 525 TQELGFDAVEFNASDTRSKRLLK----------EEVASLLGNKSLYGYANGQSQAVSKKH 574
Query: 475 VLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKP 533
VLIMDEVDGM+ DRGG+ +LIA IK S IPIIC+CNDR K++SLVNYC DLRF++P
Sbjct: 575 VLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVNYCYDLRFQRP 634
Query: 534 RKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQ 593
R ++I R+M I E L++ LE + N DIR IN L +S + + Q
Sbjct: 635 RLEQIKGRIMSICYKEKLKMPAAKLEGIIAATNNDIRQTINHLALLSAG---DQLPESGQ 691
Query: 594 RLLSSAKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSS 652
+ +AKD + P+ V K+F + K + + ++ DL D + PL +Q+NY+ P
Sbjct: 692 QQTVAAKDLKLGPWDVVRKVFTADDHKQMSIYDKCDLFFHDYSMAPLFVQQNYLQVLP-Q 750
Query: 653 AGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETL 712
R+E+ L+ +A A+++S GD+ + +IR N W L + ++ S ++P M G
Sbjct: 751 GNRNEI--LAKVAATADALSLGDLVDKRIRANSAWSLLPTQAVFSSLLPGEYMCGHF--- 805
Query: 713 EQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQL 771
G+ N F GWLGKNS K RL ++LH H + + S+L ++RL+Y LL +
Sbjct: 806 -TGQIN---FPGWLGKNSRTNKRSRLAQELHDHTRVCTSASRL---SVRLEYAPHLLANI 858
Query: 772 TEPL 775
PL
Sbjct: 859 VRPL 862
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 64/99 (64%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + R + G KE+P+GAPDCL GLTF+++G L+S+ER+EA +IK GGR+ V
Sbjct: 203 YQKYKNRSSCLNPGSKEIPKGAPDCLKGLTFLVTGILESMERDEAASVIKEFGGRIMTVV 262
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR 278
KK NYL+ E+ K +A+E L+ED LF++IR
Sbjct: 263 GKKLNYLVVGEEAGPKKLAQAEEHNVSILSEDALFELIR 301
>gi|344303101|gb|EGW33375.1| hypothetical protein SPAPADRAFT_71228 [Spathaspora passalidarum
NRRL Y-27907]
Length = 878
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 196/617 (31%), Positives = 305/617 (49%), Gaps = 82/617 (13%)
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
G ++PE P+ +G L +L+R+ AE L KR+G +VT S+S KT+ ++ +D
Sbjct: 171 GTIDIPEAQPNFF-------TGQLPNLDRDSAESLAKRYGAKVTKSISGKTSLVVLGDDA 223
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMI-------------------RASKPMKALAQAESKK 293
+K K K+L + EDG +++ R + K + QAE
Sbjct: 224 GPSKVKKIKQLHIKTIDEDGFVELLKRMPLEGGSGEAAQKAKLKREEEERKVIEQAEHDA 283
Query: 294 SVE---------KVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSL 344
VE K+AA+ S + + ++ P PI PAK K
Sbjct: 284 RVEAEQEEKQRKKLAAAQATASKSSQGSSISAPPLQPI-------IPAKDK--------- 327
Query: 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHW--NEKFLDTGTKRNGKKQNDASAEKAAIL 402
WT+K+ P + +++ GN+ + +L WL +W N+K T ++G + +A ++
Sbjct: 328 LWTDKHAPTSTSQLCGNKGQIAKLRNWLDNWFENQKHGFTKAGKDG-----SGVYRAVLI 382
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA--DAKISKGIGGSNANSIKELVSNE 460
SG PG+GKTTAA LV LG+ +E NASD R K+ +A + + ++ + ++
Sbjct: 383 SGPPGIGKTTAAHLVANELGYDVLEKNASDVRSKSLLNATVKSILDNTSVVGFFKQREDK 442
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
L D SK K LIMDEVDGMS+GD GG L +I+ +P+I ICND+ K+++
Sbjct: 443 QLG---DNSK--KICLIMDEVDGMSSGDHGGAGALSQFCRITHMPMILICNDKSLPKMRT 497
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
C DL FR+P +QE+ RLM IA EG++++ + +L + DIR IN + +S
Sbjct: 498 FDRVCFDLPFRRPSEQEVKSRLMTIALREGVKLDPNIIGQLVQATSNDIRQMINLMSQVS 557
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG---FNGGKLRMDERIDLSMSDPDLV 637
+ I + + K + PF +L + + ++E++DL +D D
Sbjct: 558 KTQKAIGNATLEEINQGWKKQVILKPFDIAGRLLSSGIWTSPRQNLNEKLDLYFNDIDFA 617
Query: 638 PLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRN-QQWQLSQSSSLA 696
PL+IQENY+ RP G K L IARAA+ IS D+ N IR + QQW L L
Sbjct: 618 PLMIQENYLLTRPRLPG----KHLDHIARAADDISQSDLINSLIRSSEQQWSLLPFHGLM 673
Query: 697 SCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGR 756
S + P+ + G + QG F+ WLG+NS K R+L++L +H K+ +
Sbjct: 674 SSVRPSYEVAG----MVQGRLAFS---SWLGQNSKQMKYQRILQELQYH--TRIKTSTTK 724
Query: 757 DTLRLDYFSLLLKQLTE 773
LRLDY + L +L E
Sbjct: 725 QELRLDYLNPLWNKLVE 741
>gi|146423370|ref|XP_001487614.1| hypothetical protein PGUG_00991 [Meyerozyma guilliermondii ATCC
6260]
Length = 708
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 183/593 (30%), Positives = 307/593 (51%), Gaps = 50/593 (8%)
Query: 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKE 262
+CL GLT V +G L +L+R++AE L K++G +VT ++S KT+ ++ ++ +K K K
Sbjct: 10 NCLSGLTIVFTGVLPNLDRDQAEGLAKQYGAKVTKAISGKTSLVVLGDEAGPSKVQKIKA 69
Query: 263 LGTPFLTEDGLFDMIR------ASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTS 316
+TE+ +++R + + A+ + + K+ ++ ++ + E +
Sbjct: 70 NKIKAITEESFLELLRRMPAEGGNSELALRAKEKRDEEERKLKEAVEREEREEREQAAKK 129
Query: 317 APKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN 376
A + ++ + +P+ Q S+ WT KY PK +++ GN+ + +L +WLA W
Sbjct: 130 AKTSSVKNESSQNTPS----QPTTSSADLWTVKYAPKDTSQLCGNKGQINKLQSWLASWF 185
Query: 377 EKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436
+ +G K G + + +A ++SG PG+GKT+AA LV LG+ +E NASD R
Sbjct: 186 DN-AKSGFKNPG--SDGSGVFRACLISGPPGIGKTSAAHLVAHNLGYDVLEKNASDVR-- 240
Query: 437 ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTV------LIMDEVDGMSAGDRG 490
SK + SN +K ++SN ++ +V +IMDEVDGMS+GD G
Sbjct: 241 -----SKSLLNSN---LKSVLSNTSVVGFFKHQHDQASVNDRRFCIIMDEVDGMSSGDHG 292
Query: 491 GIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEG 550
G L A +I+ +P+I ICND+ K+++ DL FR+P + E+ RLM IA E
Sbjct: 293 GAGALSAFCRITSMPLILICNDKLLPKMRTFDRVTLDLPFRRPTENEVRSRLMTIALREK 352
Query: 551 LEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAV 610
++++ + +L DIR I L +S + I +++ + + K + PF
Sbjct: 353 IKLDPTVIGQLVQATGNDIRQMITMLATVSRTQKTIGHNESKDMAKAWQKQAILKPFEIT 412
Query: 611 DKLFGFNGGKLR-------MDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSL 663
+L G++ ++++IDL +D D PL+IQENY++ RP++ + L
Sbjct: 413 ARLL---SGQIHNPNANHSLNDKIDLYFNDIDFTPLMIQENYLSTRPTNVTSTK-NHLER 468
Query: 664 IARAAESISDGDIFNVQIRR-NQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRF 722
+A AA+ IS+ DI N IR QQW L ++ S + PA + GQ TL F
Sbjct: 469 VASAADDISESDIINSLIRSGQQQWSLLPFHAVMSSVKPALSVAGQ-VTLRIN------F 521
Query: 723 GGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
GWLG+NS K RLL+++ +H ++ + LRLDY + L +LT PL
Sbjct: 522 AGWLGQNSKAMKYQRLLQEIQYH--TRLRTSTDKMQLRLDYLAALQHKLTTPL 572
>gi|256071069|ref|XP_002571864.1| chromosome transmission fidelity factor [Schistosoma mansoni]
Length = 1015
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 217/697 (31%), Positives = 335/697 (48%), Gaps = 98/697 (14%)
Query: 177 RGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVT 236
R F + R P G +E+P+G PDCL GL F+I+G L+ +ERE+A +LI+ GG+V
Sbjct: 183 RKHFWAYKARDGPRSLGSREIPKGTPDCLKGLNFLITGILECIEREDAANLIQNCGGKVL 242
Query: 237 GSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASK--PM----KALAQAE 290
++ KKT+YL+ + AK KA L +TE+ LF+MI S P+ ++ +E
Sbjct: 243 KTLGKKTDYLVVGREPGAAKIEKANNLKIKQITEEYLFEMIEKSSNVPLVHHKSNVSNSE 302
Query: 291 SKKSVEKVAASLPKK----------------SPQNI--EAKSTSAPKAPIERMKTVASPA 332
S K +E V + K+ SP N K S K + + ++ +
Sbjct: 303 SSKKLEPVDVNDCKQKLKSPKKSPKKKQYTESPDNALKSHKHESPNKCARKSVTSLCNEL 362
Query: 333 KRKGQNIQQSSLTWTEKY-------RPKTPNEIVGN-QQLVKQLHTWLAH-WNEKFLDTG 383
+ + ++ T+ K KTP + L+K++ + L+ W +K+ T
Sbjct: 363 PLTARPVLTNNSTFNSKTDRNHSSGLSKTPTNFIDKPDSLLKEMGSKLSELWVDKYKPTS 422
Query: 384 TK----RNGKK-------------QNDASAE-KAAILSGSPGMG---------------- 409
+ +NG + +D SA KA S +P G
Sbjct: 423 IRSLIGQNGAQSPANRLLNWLSSWHSDFSAGLKAKAYSSAPPWGPSSSDDGKWARAALLS 482
Query: 410 ------KTTAAKLVCQMLGFQAIEVNASDSRGK--ADAKISKGIGGSNANSIKELVSNEA 461
KT+ A LVC+ LG+ E NASD R K +I + +G N + + +A
Sbjct: 483 GPPGIGKTSTAILVCKQLGYTYCEFNASDCRSKRCLSEEIGQSLGLRN---LSHMAFGQA 539
Query: 462 LSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
+ N S H VLIMDEVDGM+ DRGG+ +LI IKI+++PIIC+CNDR + K++S
Sbjct: 540 STLN---SGH--HVLIMDEVDGMAGNEDRGGMQELINMIKITQLPIICMCNDRQAIKIRS 594
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
L NYC DLRF +PR ++I ++ IA E + + L + D N DIR IN +Q M
Sbjct: 595 LANYCLDLRFHRPRVEQIKSAVLSIACKENVNLPPDVLTNIIDSSNHDIRQVINNVQ-MW 653
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF-----GFNGGKLRMDERIDLSMSDPD 635
S +I + ++ L + KD ++ F + K+F G G +E +DL D +
Sbjct: 654 CSSGLIDSEGLKMDALGARKDLHLNAFDVIRKVFAPDISGSQGSVATFNESLDLFFQDYN 713
Query: 636 LVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIR--RNQQWQLSQSS 693
L+PL ++ENY+N R + D+ K L L+++AA I+ DI + IR R W L
Sbjct: 714 LIPLFVEENYLNVRVHNT-HDDKKILQLMSQAASDIATADIISSTIRSSRTGSWSLLPVQ 772
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKS 752
+ S + P + G +L G + F W GKNST + R +L H LA+
Sbjct: 773 GVFSTVSPGRTLRG---SLPGGPGGVS-FPCWFGKNSTQSRINRTTSELASHLRLATHCG 828
Query: 753 KLGRDTLRLDYFSLLLKQLTEPLRVLPKDELLRKLLS 789
TL LDY + + + +T PL+ D ++ L+S
Sbjct: 829 SSNPLTLLLDYATPISELITRPLKEGDIDSAIQFLIS 865
>gi|403418247|emb|CCM04947.1| predicted protein [Fibroporia radiculosa]
Length = 972
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 197/623 (31%), Positives = 304/623 (48%), Gaps = 88/623 (14%)
Query: 189 PPHKGEKEVPE-GAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLL 247
P G K VP+ APDCL GL FV +G L S REEA +L KR+GGRVT S KT+Y++
Sbjct: 264 PVAPGSKSVPQPAAPDCLAGLAFVFTGELTSFSREEAIELAKRNGGRVTLQPSSKTSYVI 323
Query: 248 CDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKP-------MKALAQAESKKSVEKVAA 300
D +K K+ L EDG ++I P + + K+++ AA
Sbjct: 324 LGSDAGPSKLAAIKKNNLKTLDEDGFLNLIATRVPDASKLDDKTKKKREKEKEAIRTAAA 383
Query: 301 SLPKKSPQNI-EAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIV 359
+ K+ + + E+ T+A MK + + WT++Y P+T EI
Sbjct: 384 EMEKREKKAMRESGGTNA------SMKQAVT------------NQLWTDRYAPQTVKEIC 425
Query: 360 GNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQ 419
GN+ L + K+ GK + + +A +++G PG+GKTT+A + +
Sbjct: 426 GNK-------------GPSSLKSSFKKPGK--DGMNVFRAVLITGPPGIGKTTSAHMCAK 470
Query: 420 MLGFQAIEVNASDSRGKADAKISKGI----------GGSNANSIKELVSNEALSANMDRS 469
+ GF IE+NASD+R K + S I GG+ N+ +++
Sbjct: 471 LEGFTPIELNASDARSKKLVENSTNIANTSLDGWMTGGTATNAAGVTITD---------- 520
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
KT LIMDEVDGMSAGDRGG+ L A I+ +KIPIICI NDR + KLK L N +L
Sbjct: 521 ---KTCLIMDEVDGMSAGDRGGVGALSALIRKTKIPIICIANDRGALKLKPLANVAFNLT 577
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
+RKP I R++ IA E ++V +++L + DIR +N L LS + +D
Sbjct: 578 YRKPEVNAIRSRILSIAFKEKMKVPANVIDQLIEGAQSDIRQVLNMLSTWKLSSDTMDFD 637
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLFG---FN-GGKLRMDERIDLSMSDPDLVPLLI---- 641
+ + + K ++PF +KL G F+ + ++++++L D +PL I
Sbjct: 638 EGKALAKMNEKYAIMTPFNVTNKLLGPYLFSPTARETLNDKMELYFHDHSFIPLFIQPTV 697
Query: 642 -QENYINYRPSSAGRDE-----VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSS 694
QENY+ +P+ E +++LSL+ +AA S+SDGD+ + I Q W L +
Sbjct: 698 SQENYLKTQPTKVKTLEGPEKILRQLSLMDKAASSLSDGDLVDSLIHGPEQHWSLMPLHA 757
Query: 695 LASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKL 754
+ S + PA+ ++G + N F WLG+NS K R L ++ A + K+
Sbjct: 758 VCSTVRPASFLYGM--GIGYAGPNAMSFPQWLGQNSKQTKLTRQLTEVQ----ARMRIKV 811
Query: 755 GRDT--LRLDYFSLLLKQLTEPL 775
D +R Y L + +PL
Sbjct: 812 SGDKSEIRQSYIPALFPHVVKPL 834
>gi|390366385|ref|XP_797949.2| PREDICTED: replication factor C subunit 1-like [Strongylocentrotus
purpuratus]
Length = 671
Score = 266 bits (679), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 163/452 (36%), Positives = 237/452 (52%), Gaps = 19/452 (4%)
Query: 331 PAKRKGQNIQQ--SSLTWTEKYRPKTPNEIVGNQ---QLVKQLHTWLAHWNEKFLDTGTK 385
PA +GQ+ SL W +KY+P + I+G Q K+L WL WN+ +
Sbjct: 117 PAPGRGQSAAGGGQSLMWVDKYKPVSTKNIIGQQGDKSNAKKLLNWLRRWNDNNYGNNKE 176
Query: 386 RNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI 445
+ ++ A +AA+LSG PG+GKTT A LVCQ LGF IE NASDSRGK + GI
Sbjct: 177 KAKFNRDAGFAFRAALLSGPPGVGKTTTATLVCQELGFSFIEQNASDSRGKKS--LQGGI 234
Query: 446 GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKI 504
S N + + H K LIMDEVDG++ DRGGI +LI IK ++
Sbjct: 235 AESLDNQSIADMFKKGCGKKTSEEGH-KHCLIMDEVDGVAGNEDRGGIQELIQMIKTTRT 293
Query: 505 PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR 564
PIICICNDR K++SLVNYC DLRF++PR +I +M IA EGL V AL+ +
Sbjct: 294 PIICICNDRSHPKIRSLVNYCFDLRFQRPRVPQIKSAMMSIAYKEGLTVPPAALDGMIMA 353
Query: 565 VNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK-LRM 623
N D+R ++ L S + + + ++ KD + P+ ++F K +
Sbjct: 354 ANQDVRQVLHNLSMWSAGQKKMNAEQMNTDARNAKKDLKLGPWDVARQVFSSKDLKTMSF 413
Query: 624 DERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRR 683
++++DL D + L +QENY++ P D K+L L+++AA+S+ D+ IR
Sbjct: 414 NDKMDLFFHDYSIAGLFVQENYLHVIPDEGRGDIKKQLDLVSKAADSMCQSDLVEKAIRT 473
Query: 684 NQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLH 743
W+L + ++ + +IP M G + F WLGKNST GKN RLL++L
Sbjct: 474 RNCWRLLPTQAVFASVIPGTTMQGYMGGMIN-------FPSWLGKNSTRGKNFRLLQELQ 526
Query: 744 FHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
H S + + +L +Y L K LT+P+
Sbjct: 527 VHMRKSTSASI--RSLNQEYLPRLRKFLTQPM 556
>gi|353228574|emb|CCD74745.1| putative chromosome transmission fidelity factor [Schistosoma
mansoni]
Length = 1386
Score = 265 bits (678), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 217/697 (31%), Positives = 335/697 (48%), Gaps = 98/697 (14%)
Query: 177 RGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVT 236
R F + R P G +E+P+G PDCL GL F+I+G L+ +ERE+A +LI+ GG+V
Sbjct: 183 RKHFWAYKARDGPRSLGSREIPKGTPDCLKGLNFLITGILECIEREDAANLIQNCGGKVL 242
Query: 237 GSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASK--PM----KALAQAE 290
++ KKT+YL+ + AK KA L +TE+ LF+MI S P+ ++ +E
Sbjct: 243 KTLGKKTDYLVVGREPGAAKIEKANNLKIKQITEEYLFEMIEKSSNVPLVHHKSNVSNSE 302
Query: 291 SKKSVEKVAASLPKK----------------SPQNI--EAKSTSAPKAPIERMKTVASPA 332
S K +E V + K+ SP N K S K + + ++ +
Sbjct: 303 SSKKLEPVDVNDCKQKLKSPKKSPKKKQYTESPDNALKSHKHESPNKCARKSVTSLCNEL 362
Query: 333 KRKGQNIQQSSLTWTEKY-------RPKTPNEIVGN-QQLVKQLHTWLAH-WNEKFLDTG 383
+ + ++ T+ K KTP + L+K++ + L+ W +K+ T
Sbjct: 363 PLTARPVLTNNSTFNSKTDRNHSSGLSKTPTNFIDKPDSLLKEMGSKLSELWVDKYKPTS 422
Query: 384 TK----RNGKK-------------QNDASA-EKAAILSGSPGMG---------------- 409
+ +NG + +D SA KA S +P G
Sbjct: 423 IRSLIGQNGAQSPANRLLNWLSSWHSDFSAGLKAKAYSSAPPWGPSSSDDGKWARAALLS 482
Query: 410 ------KTTAAKLVCQMLGFQAIEVNASDSRGK--ADAKISKGIGGSNANSIKELVSNEA 461
KT+ A LVC+ LG+ E NASD R K +I + +G N + + +A
Sbjct: 483 GPPGIGKTSTAILVCKQLGYTYCEFNASDCRSKRCLSEEIGQSLGLRN---LSHMAFGQA 539
Query: 462 LSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
+ N S H VLIMDEVDGM+ DRGG+ +LI IKI+++PIIC+CNDR + K++S
Sbjct: 540 STLN---SGH--HVLIMDEVDGMAGNEDRGGMQELINMIKITQLPIICMCNDRQAIKIRS 594
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
L NYC DLRF +PR ++I ++ IA E + + L + D N DIR IN +Q M
Sbjct: 595 LANYCLDLRFHRPRVEQIKSAVLSIACKENVNLPPDVLTNIIDSSNHDIRQVINNVQ-MW 653
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF-----GFNGGKLRMDERIDLSMSDPD 635
S +I + ++ L + KD ++ F + K+F G G +E +DL D +
Sbjct: 654 CSSGLIDSEGLKMDALGARKDLHLNAFDVIRKVFAPDISGSQGSVATFNESLDLFFQDYN 713
Query: 636 LVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIR--RNQQWQLSQSS 693
L+PL ++ENY+N R + D+ K L L+++AA I+ DI + IR R W L
Sbjct: 714 LIPLFVEENYLNVRVHNT-HDDKKILQLMSQAASDIATADIISSTIRSSRTGSWSLLPVQ 772
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKS 752
+ S + P + G +L G + F W GKNST + R +L H LA+
Sbjct: 773 GVFSTVSPGRTLRG---SLPGGPGGVS-FPCWFGKNSTQSRINRTTSELASHLRLATHCG 828
Query: 753 KLGRDTLRLDYFSLLLKQLTEPLRVLPKDELLRKLLS 789
TL LDY + + + +T PL+ D ++ L+S
Sbjct: 829 SSNPLTLLLDYATPISELITRPLKEGDIDSAIQFLIS 865
>gi|403213501|emb|CCK68003.1| hypothetical protein KNAG_0A03150 [Kazachstania naganishii CBS
8797]
Length = 855
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 188/577 (32%), Positives = 291/577 (50%), Gaps = 58/577 (10%)
Query: 222 EEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR--- 278
+ AE L KR+G RVT S+S KT+ ++ +D K K K+L + E+G +++
Sbjct: 171 DAAESLAKRYGARVTKSISGKTSVVILGDDAGPKKLEKIKKLKIKAIDENGFKELVARMP 230
Query: 279 --------ASKPMKAL--AQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTV 328
A+K K L +A++++ VE + + +K Q ++ + +S + E
Sbjct: 231 ASGGDGDAAAKARKKLDDEEAQTRRDVELLVKAEDEKKRQRVKLEGSSELEVRPE----- 285
Query: 329 ASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNG 388
+++ WT +Y P ++I GN+ V +L WL +W +KRNG
Sbjct: 286 ----------VREEDKLWTVRYAPTNLSQICGNKGPVTKLRNWLQNWE------ASKRNG 329
Query: 389 KK---QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI 445
K ++ + + A+LSG PG+GKTTAA L+C+ LG+ +E NASD R K+ ++ G+
Sbjct: 330 FKNPGRDGSGIFRTAMLSGPPGIGKTTAAHLLCEELGYDILEKNASDVRSKS--LLNAGV 387
Query: 446 GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIP 505
NA +V N + K V+IMDEVDGMS GDRGG+ L + + P
Sbjct: 388 --KNALGNMSVVGYFKQKDNYEDINGKKFVVIMDEVDGMSGGDRGGVGQLAQYCRKTDTP 445
Query: 506 IICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV 565
+I ICN+R K++ C D++FR+P I RLM IA EG +++ +++L
Sbjct: 446 MILICNERNLPKMRPFDRTCLDIQFRRPDANSIRARLMTIAVREGFQLDPTIIDKLVQST 505
Query: 566 NGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG------FNGG 619
GDIR IN L +S + I + +I + S K+ + PF K+
Sbjct: 506 RGDIRQIINLLSTISKTTKKIGHGNINEITKSWEKNVALKPFDITHKMLDGRIYTELGSS 565
Query: 620 KLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNV 679
++++I L D D PL+IQENYI+ P + V L +A AA+SIS GD+
Sbjct: 566 SFTLNDKIALYFDDFDFTPLMIQENYIHCNPGNLPPG-VTPLMAVANAADSISQGDLVER 624
Query: 680 QIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRL 738
+IR +Q W L ++ S + PA+++ G G NF WLG+NS MGK RL
Sbjct: 625 KIRSTEQLWSLLPLHAVMSSVRPASMVAGHM----SGRINFT---SWLGQNSKMGKYYRL 677
Query: 739 LEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
L++L +H S + + LRL Y SLL +L PL
Sbjct: 678 LQELQYHTRLSTSAD--KTALRLSYMSLLKNRLLMPL 712
>gi|428672451|gb|EKX73365.1| replication factor RFC1 C terminal domain containing protein
[Babesia equi]
Length = 962
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 216/681 (31%), Positives = 332/681 (48%), Gaps = 75/681 (11%)
Query: 116 TPSKKLKSGSGRAVAQKSVDIDDDEEE------DVKKTESPLKSS-GRGRGGRGASGAPA 168
TP K++ + V S D+D EE D T SP K S R + +P
Sbjct: 252 TPKKQVVAAPAEEVTLFS---DNDPEEPEEILIDSSATTSPAKKSPTHKRTNSEPANSPK 308
Query: 169 VGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLI 228
+GR N PH +E +G+ + G FV +G LD+++R +A +
Sbjct: 309 AKKGRVTTPKNAHNVTSS-SLPHTLNEESLKGS--TIIGKKFVFTGELDNIDRYKAASKV 365
Query: 229 KRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGL---FDMIRASKPMKA 285
+ GG V VS TNYL+C E + E G P+ T D ++A K +K
Sbjct: 366 QEFGGIVVSGVSGVTNYLVCGEKL---------EDGRPYTTGTKYKKACDFLKAGKDIKI 416
Query: 286 LAQAESKKSVEKVAASLPKKSPQNIEA-KSTSAPKAPIERMKTVASPAKRKGQNIQQSS- 343
+ + E K + P+ EA K+ PK + K S + Q+SS
Sbjct: 417 IKEDEFLKLIGWDNEEFASTKPEVEEAPKTREKPKEELNSSKPTVS-----ATHAQESSY 471
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE---KFLDTGTKRNGKKQNDASAEKAA 400
L TEKYRPKT +++GN++ + +L WLA W++ K + KR G K + ++ K A
Sbjct: 472 LPLTEKYRPKTLADLIGNKKSIDKLCDWLATWDKVHKKGIKNPVKRIGYKVENVNS-KCA 530
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADA-KIS-KGIGGSNANSIKELVS 458
+LSGSPG+GKTT AKLV + + +E NASD R KA KI+ GG S VS
Sbjct: 531 LLSGSPGIGKTTCAKLVAEHFKYTCVEFNASDFRSKAAIEKIALMATGGQTLGSTG--VS 588
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
N T++++DEVDG+S+GDRGGI +++ I +K PIIC+CND+ QK+
Sbjct: 589 N--------------TLILLDEVDGISSGDRGGIPAVLSLIDSTKCPIICVCNDKSFQKM 634
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
LVN C D++F P + + A R+ +I E +E+ E L EL ++ NGD+R +N +Q+
Sbjct: 635 SGLVNKCYDIKFSSPTEDQFAARVRRICTIEKIEIPEKRLSELYEQSNGDLRYTLNYIQF 694
Query: 579 MSLSLSVIKYDDIRQRLLSSAKDED--ISPFTAVDKLFGFNGGKL--RMDERIDLSMSDP 634
SV + AKDE+ ++PF + ++F ++ E +L SD
Sbjct: 695 ---GHSV----NFEGASFVHAKDENYALNPFESCGRIFNAQSKTFTKKLMEISELFFSDF 747
Query: 635 DLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
+L+PL++QENY+ Y G L L+++ + D+ + I+ NQ + L +
Sbjct: 748 NLMPLMLQENYLKYLGGIKG-----GLPLMSKLSVIYIYADMVDKSIKTNQVYSLLPDLA 802
Query: 695 LASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKL 754
S +IP+ + T ++ F WLGKNST KN R++ +L +LAS +
Sbjct: 803 SLSAVIPSLEIAKAEGTAKERL----AFPQWLGKNSTTTKNRRIMSELGM-NLASISTVN 857
Query: 755 GRDTLRLDYFSLLLKQLTEPL 775
G + + Y L+ K + L
Sbjct: 858 GSNLVVDGYLDLIYKAVMSHL 878
>gi|238882346|gb|EEQ45984.1| activator 1 95 kDa subunit [Candida albicans WO-1]
Length = 890
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 182/597 (30%), Positives = 305/597 (51%), Gaps = 44/597 (7%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
E+PE P+CL GLT V +G + +L+R AE K++G +VT S+S KT+ ++ D +
Sbjct: 183 ELPEAQPNCLTGLTIVFTGQMPNLDRGTAEQTAKQYGAKVTKSISGKTSLVVLGTDAGPS 242
Query: 256 KSTKAKELGTPFLTEDGLFDMIRA--SKPMKALAQAESKKSVEKVAASLPKKSPQNIEAK 313
K K K+ + E G ++ + + A +K E+ A + +++ + +
Sbjct: 243 KVQKIKQHKIKAIDEAGFIKLLESMPADGGSGAAAEAAKLKREQEEAKIIEQAKEEERKE 302
Query: 314 STSAPKAPIERMK-TVASPAKRKG---QNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLH 369
+ ER+K TV + + G + + WT+++ P N++ GN+ +++L
Sbjct: 303 REAEKARVAERVKATVNTKGETFGFQKKEVAPQDKLWTDRHAPTDLNQLCGNKGQIQKLK 362
Query: 370 TWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429
+WL +W D + +D + +A ++SG PG+GKT+AA LV + LGF IE N
Sbjct: 363 SWLENW----FDNQARGFKGNASDPDSFRAVLISGPPGIGKTSAAHLVAKSLGFDIIERN 418
Query: 430 ASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDR-------SKHPKTVLIMDEVD 482
ASD R K+ NAN +K +++N ++ S + + +IMDEVD
Sbjct: 419 ASDVRSKSLL---------NAN-VKSILNNTSVVGYFKHRGDTEKNSNNKRFCIIMDEVD 468
Query: 483 GMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRL 542
GMS+GD GG L KI+ +P+I ICND+ K+++ DL FR+P + E+ RL
Sbjct: 469 GMSSGDHGGAGALSQFCKITSMPMILICNDKSLPKMRTFDRTTYDLPFRRPSENEVKSRL 528
Query: 543 MQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDE 602
M IA E ++++ + +L + DIR IN L +S + I + +++ S K
Sbjct: 529 MTIAFREKVKLDPSVIGQLVQATSNDIRQMINLLSTVSKTQKQIGANSMKEVKESWQKQV 588
Query: 603 DISPFTAVDKLFG---FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
+ PF +L ++ + ++++++L +D D PL+IQENY+ P G K
Sbjct: 589 VLKPFDIAGRLLNSGIWSDPRSSLNDKLNLYFNDFDFSPLMIQENYLITNPRLPG----K 644
Query: 660 RLSLIARAAESISDGDIFNVQIRR-NQQWQLSQSSSLASCIIPAALMHGQRETLEQGERN 718
++ L+A+AAE IS D N IR QQW L + S + P+ + GQ G N
Sbjct: 645 QIELVAKAAEDISISDTVNSLIRSGEQQWSLLPFHGIMSTVKPSYEVAGQIT----GRLN 700
Query: 719 FNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F+ WLG+NS K R+L++L +H ++ + LRLDY L +++ +PL
Sbjct: 701 FS---SWLGQNSKQMKYQRMLQELQYHTRV--RTSTTKQELRLDYLDALWQKIVKPL 752
>gi|221052935|ref|XP_002257842.1| replication factor C subunit 1 [Plasmodium knowlesi strain H]
gi|193807674|emb|CAQ38378.1| replication factor C subunit 1, putative [Plasmodium knowlesi
strain H]
Length = 900
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 191/602 (31%), Positives = 297/602 (49%), Gaps = 51/602 (8%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA-------GAKS 257
L FV++G + R+E + IK HGG V +VS KT+YL+ E + G K
Sbjct: 192 FHSLKFVLTGVFKNFSRDELQSKIKEHGGNVMSAVSSKTHYLIHGEYLEDGRMYNEGKKY 251
Query: 258 TKAKEL------GTPFLTEDGLFDMI-----RASKPMKALAQAESKKSVEKVAASLPKKS 306
KA E+ L E+ M+ + SK A + + ++EK+ S K
Sbjct: 252 QKALEVQKMSKCNIKILNEEEFLQMLPEEKNKTSKWEDAADGKDDQDALEKMQQSDFTKV 311
Query: 307 PQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLT--WTEKYRPKTPNEIVGNQQL 364
A + + K +P K QQ L W EKYRP++ NE+VGN Q
Sbjct: 312 GSESGASGSGSYNRGTHSEK--ETPPKCSAPGDQQKILNQLWVEKYRPRSLNELVGNTQN 369
Query: 365 VKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE----KAAILSGSPGMGKTTAAKLVCQM 420
V +L WLA W++ + G K+ K E + A+LSGS G+GKTT AK+V +
Sbjct: 370 VLKLKNWLASWDDVCIK-GLKKQVTKTFRGVYENVNARCALLSGSAGIGKTTTAKIVAES 428
Query: 421 LGFQAIEVNASDSRGKADA-KISK-GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478
G+ IE NASD R KA KIS+ GG + SIK K KT +IM
Sbjct: 429 SGYNVIEFNASDERNKAAVEKISEMATGGYSIASIKS-------------RKLTKTCIIM 475
Query: 479 DEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEI 538
DEVDGMS+GD+GG A ++ I+ +K PIICICNDR + K+++L N C DL+F P K +
Sbjct: 476 DEVDGMSSGDKGGSAAILKLIEKTKCPIICICNDRQNSKMRTLANKCYDLKFTSPNKNSV 535
Query: 539 AKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSS 598
RL++I E + + ALE L + NGD+R +N LQ +S + I++ D+++ L +S
Sbjct: 536 VNRLLEICKKEDITMEPNALELLWESTNGDMRQMLNALQLLSRTYKRIQFLDLKKELNNS 595
Query: 599 AKDED--ISPFTAVDKLFGFN-GGKLRMDERIDLSMSDPDLVPLLIQENYIN-YRPSSAG 654
K+ +PF KL F+ KL++ E +DL D +L+P I ENY N + +
Sbjct: 596 NKNIQSLANPFEITLKLLNFHESSKLKIREIMDLFFVDYELIPFFISENYTNVFNDNDKS 655
Query: 655 RDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQ 714
+ + + ++ + ++ + ++ + L S+ SC+ P + + +
Sbjct: 656 TNWINKWIAYSQISYDLALSEKIKYNMKTTMDFSLLPHYSILSCVCPVMRIKMLKAYM-S 714
Query: 715 GERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEP 774
G N F GK ST KN RLL ++ F +++ + + + + + + + Q+ P
Sbjct: 715 GRIN---FPSAFGKISTFNKNKRLLNEVCF-NMSYKLNVCPKHMVTSGFLNYIYAQIISP 770
Query: 775 LR 776
L+
Sbjct: 771 LQ 772
>gi|67611464|ref|XP_667157.1| replication factor C subunit 1 [Cryptosporidium hominis TU502]
gi|54658259|gb|EAL36923.1| replication factor C subunit 1 [Cryptosporidium hominis]
Length = 854
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 204/699 (29%), Positives = 338/699 (48%), Gaps = 89/699 (12%)
Query: 120 KLKSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGG 179
KLK S R+ K + D+DEEED+K SP+ R + R
Sbjct: 51 KLKKTSKRSRLHKVMSSDEDEEEDLK---SPV---SRRKKDVKVKAEKESSPKRSKSSSS 104
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
N + D + E G++ V++GT +S R+E ED +K GG++T +V
Sbjct: 105 KSNLNTKTDKISSNSQN-DEELIGPFNGMSIVVTGTFNSNSRQEIEDFVKILGGKLTSAV 163
Query: 240 SKKTNYLLCDEDIA-------GAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESK 292
S +T+YL+ + G+K AK G L+ED ++ K +A
Sbjct: 164 SGRTSYLIAGNSLEDGRSIEEGSKYRNAKSKGVKILSEDEFIEIYTNYKQKEA------- 216
Query: 293 KSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRP 352
K Q+ KS ++ I+ + N +S WT++++P
Sbjct: 217 -----------KYDSQSPNRKSHGVFESGIK-----INEGNMNNSNFDGNSSLWTDRHKP 260
Query: 353 KTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKK----------QNDASAEKAAIL 402
++ ++++GN +++K+L TWL+ W ++ G K+ K Q + +AA+L
Sbjct: 261 ESLDQVLGNGEVIKKLQTWLSDWKSVVIE-GKKKAPPKASFSPGSRFPQVENINARAALL 319
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK--ADAKISKGIGGSNANSIKELVSNE 460
SG PG+GK+T A L+ + G+ IE+NASD R K + +GG + ++ S+
Sbjct: 320 SGPPGIGKSTVATLIAKKCGYIPIEMNASDDRTKEVIENLSESAVGGFSLSTFARKSSSS 379
Query: 461 A-------LSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDR 513
+ L+ NM +LIMDE+DG+ DRGG A L I+ ++ PIICICNDR
Sbjct: 380 SQFGEEGGLNTNM--------LLIMDEMDGLGGSDRGGAAALGRLIQRTRWPIICICNDR 431
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
S+K+++L C DLRF +P K +I KR+ +IAN EG+++ A+E L + V D+R +
Sbjct: 432 MSEKVRNLAPKCYDLRFSRPSKVQIIKRMQEIANKEGMKIEPNAIELLCESVGNDLRQIL 491
Query: 574 NQLQYMSLSLSVIKYDDIRQRLLSSAKDEDIS--PFTAVDKLFGFN-GGKLRMDERIDLS 630
N+LQ +SLS +++ D++ + KD ++ F+A KL + L +++++++
Sbjct: 492 NELQLLSLSNINVRFSDVKTEISGHLKDVQVTLDVFSATKKLLTTSESSHLSINDKLEIF 551
Query: 631 MSDPDLVPLLIQENYINYRPSSAGRDEV-----KRLSLIARAAESI-------SDGDIFN 678
D DL+PLL++ENYI+ +G +++++ + ES+ + D+FN
Sbjct: 552 FIDFDLMPLLLEENYISALSVKSGGGFGSGSSNQQMTVTPQMIESVLESANLFVEADVFN 611
Query: 679 VQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRL 738
++R + +W L ++ + P + L + E F WLGKNST KN RL
Sbjct: 612 AKLRTDNEWSLLSEIAVNCAVAPG--LCSTNSFLARPE-----FPKWLGKNSTTNKNKRL 664
Query: 739 LEDLHFHHLASRKSKL-GRDTLRLD-YFSLLLKQLTEPL 775
L +L RK LRL Y L+ + T PL
Sbjct: 665 LSELMAIITVGRKGNCPSSKGLRLSGYLDLIYFKATTPL 703
>gi|281202783|gb|EFA76985.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 1512
Score = 262 bits (670), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 156/464 (33%), Positives = 244/464 (52%), Gaps = 54/464 (11%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE-------- 397
W +KY+P N+++GN+ ++ WL W + K + +
Sbjct: 951 WVDKYKPVVSNDLIGNKSVIHGFADWLGKWKKHLALPLLPPLTPKVEEDDDDNKKQKKKS 1010
Query: 398 --------------------KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA 437
+AA+LSG PG+GKT+AA ++C+ +GF+ +E NASD+R K+
Sbjct: 1011 AKQTKEEKEELSRLPKIKFLRAALLSGPPGIGKTSAAVMICKEMGFEPVEYNASDTRSKS 1070
Query: 438 DAKISKGIGG-SNANSIKELVSNEALSANMDRSKHPKTV-LIMDEVDGMSA-GDRGGIAD 494
+I K + G S+ + I E V N+ + PK V +IMDE+DG S DRGG++
Sbjct: 1071 --QIEKLLSGVSDNHFITEFVQNKKV--------QPKKVAIIMDEIDGSSGNADRGGVSV 1120
Query: 495 LIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVN 554
++ IK ++IPIICICND Y +KL +L NYC DL+F+KP E++ RL+QIA E + +N
Sbjct: 1121 VLQMIKSTRIPIICICNDYYDKKLSTLKNYCLDLKFKKPTPAEVSDRLLQIAKHENMVMN 1180
Query: 555 EIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+E++ N DIR AI +Q +S + +++I+Q + S KD D+ PFT+ KL
Sbjct: 1181 RYMVEQVFQGSNCDIRQAITSMQMLSRAKVKATHNNIQQTISKSLKDIDLGPFTSAQKLL 1240
Query: 615 GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRP--SSAGRDEVKRLSLIARAAESIS 672
+ + +D ++D SD LVPLL+QENY+ P S+ + L L + AA+SIS
Sbjct: 1241 QCDSSQ-SIDTKLDYYFSDFSLVPLLVQENYLFNDPTRSNPHLKKFSELELFSMAADSIS 1299
Query: 673 DGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTM 732
+GDI N + + + L + + S +IPA L+ G+ R F F + GK S
Sbjct: 1300 EGDILNKNMF--EHFNLLPAYGIVSTVIPATLISGK-------SRMFPTFPSFFGKYSNA 1350
Query: 733 GKNLRLLEDLHFHHLASRKS-KLGRDTLRLDYFSLLLKQLTEPL 775
K R +++L H AS + + R+ Y + L +PL
Sbjct: 1351 NKQQRFVKELQLHTRASDATLQANLKETRMYYAPMFKHYLIQPL 1394
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 170 GRGRGGGRGGFMNF---GERKDPP-HKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAE 225
+ + R MN G+ PP ++G K +P G P CL ++ISG L+S ER+E +
Sbjct: 589 AQKKARKRQFLMNMKCGGQSAPPPLNRGCKPIPVGTPSCLKRKNYLISGALESFERDELK 648
Query: 226 DLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280
D+I+RHGG V +V+KK N+ + + +K K K+ G P +TED + D I S
Sbjct: 649 DIIERHGGVVVTTVTKKLNFFVEGFEAGVSKLEKVKKYGIPIITEDDVLDRINKS 703
>gi|241951560|ref|XP_002418502.1| replication factor C subunit, putative [Candida dubliniensis CD36]
gi|223641841|emb|CAX43803.1| replication factor C subunit, putative [Candida dubliniensis CD36]
Length = 886
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 184/601 (30%), Positives = 300/601 (49%), Gaps = 52/601 (8%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
++PE P+CL GLT V +G + +L+R AE K++G +VT S+S KT+ ++ D +
Sbjct: 179 DLPEAQPNCLMGLTIVFTGQMPNLDRGTAEQTAKQYGAKVTKSISGKTSLVVLGADAGPS 238
Query: 256 KSTKAKELGTPFLTEDGLFDMIRA----------SKPMKALAQAESKKSVEKVAASLPKK 305
K K K+L + E G ++ + ++ K Q E K +E+ K+
Sbjct: 239 KVQKIKQLKIKAIDEAGFIKLLESMPADGGSGAAAEAAKLKRQQEEAKIIEQAKEEERKE 298
Query: 306 SPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLV 365
+ A KT + Q + WT+++ P +++ GN+ +
Sbjct: 299 KEAERARAAERAKAT----TKTTGETFGSQKQEVAAKDKLWTDRHAPTNISQLCGNKGQI 354
Query: 366 KQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA 425
++L +WL +W G K N +D + +A ++SG PG+GKT+AA LV + LGF
Sbjct: 355 QKLQSWLENWFHN-QARGFKGNA---SDPGSFRAVLISGPPGIGKTSAAHLVAKSLGFDI 410
Query: 426 IEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDR-------SKHPKTVLIM 478
IE NASD R KA NAN +K +++N ++ S + K +IM
Sbjct: 411 IERNASDVRSKALL---------NAN-VKSILNNTSVVGYFKHRDDAEKSSNNKKFCIIM 460
Query: 479 DEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEI 538
DEVDGMS+GD GG L KI+ +P+I ICND+ K+++ DL FR+P + E+
Sbjct: 461 DEVDGMSSGDHGGAGALSQFCKITSMPMILICNDKSLPKMRTFDRTTYDLPFRRPSEIEV 520
Query: 539 AKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSS 598
RLM IA E ++++ + ++ + DIR IN L +S + I D +++ S
Sbjct: 521 RSRLMTIAFREKVKLDPSVIGQMVQATSNDIRQMINLLSTVSKTQKQIGADTMKEVKDSW 580
Query: 599 AKDEDISPFTAVDKLFG---FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGR 655
K + PF +L ++ + ++++++L +D D PL+IQENY+ P G
Sbjct: 581 QKQVVLKPFDIAARLLNSGIWSDPRSSLNDKLNLYFNDFDFSPLMIQENYLITNPRLPG- 639
Query: 656 DEVKRLSLIARAAESISDGDIFNVQIRR-NQQWQLSQSSSLASCIIPAALMHGQRETLEQ 714
K++ L+A+AAE IS D N IR QQW L + S + P+ + GQ
Sbjct: 640 ---KQIDLVAQAAEDISISDTVNSLIRSGEQQWSLLPFHGIMSTVKPSYEVAGQIT---- 692
Query: 715 GERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEP 774
G NF+ WLG+NS K R+L++L +H ++ + LRLDY L +++ +P
Sbjct: 693 GRLNFS---SWLGQNSKQMKYQRMLQELQYHTRV--RTSTTKQELRLDYLDALWQKVVKP 747
Query: 775 L 775
+
Sbjct: 748 I 748
>gi|156093631|ref|XP_001612854.1| replication factor C subunit 1 [Plasmodium vivax Sal-1]
gi|148801728|gb|EDL43127.1| replication factor C subunit 1, putative [Plasmodium vivax]
Length = 945
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 193/605 (31%), Positives = 291/605 (48%), Gaps = 55/605 (9%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA-------GAKS 257
L FV++G + R+E + IK HGG V +VS KT+YL+ E + G K
Sbjct: 233 FHNLKFVLTGVFKNFSRDELQSKIKEHGGSVMSAVSSKTHYLIHGEYLEDGRMYNEGKKY 292
Query: 258 TKAKELG------TPFLTEDGLFDMI-----RASKPMKALAQAESKKSVEKVAASLPKKS 306
KA EL L E+ L M+ + K A + EK S K
Sbjct: 293 QKAFELQKMSKSIIKILNEEQLLQMMPQEKDQTPKGGDAGDGEDDPDGFEKRQQSDSTKI 352
Query: 307 PQNIEAKSTSAPKAPIERMKTVASPAKRK---GQNIQQSSLT---WTEKYRPKTPNEIVG 360
+ R V S K G +Q + W EKYRPK NE+VG
Sbjct: 353 RSESGNSGGMSGGNSYNR--AVHSEQKNPPSGGAPTEQREVLNQLWVEKYRPKNLNELVG 410
Query: 361 NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE----KAAILSGSPGMGKTTAAKL 416
N Q V +L WLA W++ + G K+ K E + A+LSGS G+GKTT AK+
Sbjct: 411 NNQNVLKLKNWLASWDDVCI-KGLKKQVTKTFRGVYENVNARCALLSGSAGIGKTTTAKI 469
Query: 417 VCQMLGFQAIEVNASDSRGKADA-KISK-GIGGSNANSIKELVSNEALSANMDRSKHPKT 474
V + G+ IE NASD R KA KIS+ GG + SIK K KT
Sbjct: 470 VAESSGYSVIEFNASDERNKAAVEKISEMATGGYSIASIKS-------------RKLTKT 516
Query: 475 VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPR 534
+IMDEVDGMS+GD+GG A ++ I+ +K PIICICNDR + K+++L N C DL+F P
Sbjct: 517 CIIMDEVDGMSSGDKGGSAAILKLIEKTKCPIICICNDRQNAKMRTLANKCYDLKFTTPN 576
Query: 535 KQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQR 594
K + KRL++I E + + ALE L + NGD+R +N LQ +S + I++ D+++
Sbjct: 577 KNSVVKRLLEICKQEDIMMEPNALELLWESTNGDLRQMLNALQLLSKTYKRIQFLDLKKE 636
Query: 595 LLSSAKDED--ISPFTAVDKLFGFN-GGKLRMDERIDLSMSDPDLVPLLIQENYIN-YRP 650
L +S K+ +PF KL F+ KL++ E +DL D +L+P I ENY N +
Sbjct: 637 LNNSNKNIQSLANPFEITLKLLNFHESSKLKVREIMDLFFVDYELIPFFISENYTNVFND 696
Query: 651 SSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRE 710
+ + + + ++ + ++ + ++ + L S+ SC+ P + +
Sbjct: 697 NDKSASSINKWNAYSQISYDLALAERIKYNMKTTMDFSLLPHFSILSCVCPVMRIK-MLK 755
Query: 711 TLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQ 770
+ G N F GK ST KN RLL ++ F +++ + + + + + + + Q
Sbjct: 756 SFMSGRIN---FPSAFGKISTFNKNKRLLNEVCF-NMSYKLNVCPKHMVTSGFLNYIYAQ 811
Query: 771 LTEPL 775
+ PL
Sbjct: 812 IISPL 816
>gi|409081823|gb|EKM82182.1| hypothetical protein AGABI1DRAFT_119115 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 913
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 198/598 (33%), Positives = 304/598 (50%), Gaps = 39/598 (6%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P G K+VP+GAP+CL GL+FV +G L S REEA DL KR GGRV S KT++++
Sbjct: 204 PSAPGSKQVPDGAPNCLLGLSFVFTGELSSFSREEAVDLAKRFGGRVVLQPSSKTDFVVL 263
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPM-KALAQAESKKSVEKVAASLPKKSP 307
+D AK K+ G L+ED ++I + + A++KK +EK + +K+
Sbjct: 264 GDDAGPAKLAAIKKHGLKTLSEDEFLNLIATREGADEGGLDAKTKKKLEKEQQEI-RKAA 322
Query: 308 QNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQ 367
+ +E + S+ ++ +IQ WT +Y P++ EI GN+ V++
Sbjct: 323 KEMEKRENSSSHVQLD-------------PSIQ----LWTTRYAPQSLKEICGNKGQVEK 365
Query: 368 LHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
L WL W L +G K+ GK + + +++G PG+GKTT+A L ++ GF IE
Sbjct: 366 LLQWLNDWPSS-LKSGFKKPGKI--GMNIFRGVLITGPPGIGKTTSAHLCAKLAGFTPIE 422
Query: 428 VNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG 487
+NASD+R K K+ + N S+ + + ++ KT LIMDEVDGMSAG
Sbjct: 423 LNASDTRSK---KLVENGMNINNTSLDGFIHGAGSTNSVGVPITGKTCLIMDEVDGMSAG 479
Query: 488 DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
DRGG+ L A IK SKIPIICI NDR +QKLK L++ L F + K ++ A
Sbjct: 480 DRGGVGALNAIIKKSKIPIICIANDRGAQKLKPLMSTTFSLNFSRWDSNTHRKLVLTNAP 539
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPF 607
+G++V +++L DIR +N L LS + +D+ + + + K ++PF
Sbjct: 540 DQGMKVPANVVDQLIQGSQSDIRQVLNMLSTWKLSSDSMDFDESKSLVKMNEKYAIMTPF 599
Query: 608 TAVDKLFG---FNG-GKLRMDERIDLSMSDPDLVPLLIQENYINYRPS-----SAGRDEV 658
K+ G F+ + + ++++L D VPL IQENY+ +P+ E+
Sbjct: 600 DITSKILGPYLFSSTARETLGDKMELYFQDHSFVPLFIQENYLKSQPARVRNLDGPEKEL 659
Query: 659 KRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGER 717
K L L+ +A+ SISDGD+ + I Q W L ++ S + PA+ ++G + G
Sbjct: 660 KHLQLMEQASASISDGDLVDSLIHGPEQHWGLMPLHAVCSTVRPASCLYGS--GVHFGGP 717
Query: 718 NFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
N F WLG+NS K R L D+ S + +R Y L + PL
Sbjct: 718 NSMSFPQWLGQNSKKNKLARQLADVQVRMRLKVSSD--KAEIRQSYVPALFPYIVRPL 773
>gi|67540266|ref|XP_663907.1| hypothetical protein AN6303.2 [Aspergillus nidulans FGSC A4]
gi|40739497|gb|EAA58687.1| hypothetical protein AN6303.2 [Aspergillus nidulans FGSC A4]
gi|259479483|tpe|CBF69746.1| TPA: Replication factor C like protein
[Source:UniProtKB/TrEMBL;Acc:P78622] [Aspergillus
nidulans FGSC A4]
Length = 1092
Score = 258 bits (660), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 201/654 (30%), Positives = 316/654 (48%), Gaps = 76/654 (11%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
F+ G + P G E+P GA +CL GLTFV +G LD+L REE + L+KR+GG+VT +
Sbjct: 303 FVFGGGKSRDPVSGGAELPVGAENCLAGLTFVFTGVLDTLGREEGQALVKRYGGKVTTAP 362
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR---------ASKPMKALAQAE 290
S KT++++ D +K + ++E+GLF++IR + + E
Sbjct: 363 SGKTSFVVLGSDAGPSKLATISKHKLKTISEEGLFELIRRLPANGGDGKAAEKYEAKKKE 422
Query: 291 SKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVAS-----PAKRKGQNIQQSSLT 345
+ + K+AA + + E K A ER K V S K K +N L
Sbjct: 423 EDEKIRKMAAEI------DAEEKRNEA-----ERRKEVKSGQTTQDVKDKKENNADDQL- 470
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WT KY P + N I GN+ V++L WL +W + TK ++ + ++ ++ G
Sbjct: 471 WTSKYAPTSLNMICGNKGAVEKLQAWLRNWRKSAKANFTKPG---KDGSGLYRSVMIHGP 527
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKTTAA LV ++ G+ +E NASD+R K + S +G + S++ S S
Sbjct: 528 PGIGKTTAAHLVAKLEGYDVVESNASDTRSKKLVE-SGLLGVLDTTSLQGYFST---SNK 583
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
S VLIMDEVDGMSAGDRGG+ + A K ++IP+I ICN+R K+K +
Sbjct: 584 KVESGKKNLVLIMDEVDGMSAGDRGGVGAMAAIAKKTQIPLILICNERRLPKMKPFDHVT 643
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS- 584
++ FR+P +++ RL+ I E +++ L+ L + + DIR IN L + L S
Sbjct: 644 FEIPFRRPTVEQVRARLLTICFREKMKIPPQVLDSLIEGTHADIRQVINMLSAVRLDRSE 703
Query: 585 ---------VIKYDDIRQRLLSSAKDEDISPFTAVDKLFG----FNGGKLRMDERIDLSM 631
+ YD +Q + K + P+ V K+ ++++ +L
Sbjct: 704 QGDQTGQDYSLDYDQGKQMSKAWEKHIILKPWDIVGKILNPQMFSQSSTATLNDKSELYF 763
Query: 632 SDPDLVPLLIQENYINYRPSSAGRDE-----VKRLSLIARAAESISDGDIFNVQIR-RNQ 685
+D + L++QENY+ +P+ A E +K L L AA SISDGD+ + I Q
Sbjct: 764 NDHEFSYLMLQENYLRTKPTRANNYEGKERKLKLLELADNAASSISDGDLVDRMIHGSQQ 823
Query: 686 QWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNL------RLL 739
QW L + ++ S + PA+ M G +E+ F WLG+NS G + R
Sbjct: 824 QWSLMPTHAIFSFVRPASFMFGN--MMERPA-----FTSWLGQNSKQGLIIVFGVIAREA 876
Query: 740 EDLHFHHLASRKSKL----------GRDTLRLDYFSLLLKQLTEPLRVLPKDEL 783
+ +H L+ ++ R +R Y LL +L + L V KD +
Sbjct: 877 DVVHAGKLSRYVKEIQGRMRLRASGDRHEVRQQYIPLLWDRLVKRLMVDGKDSV 930
>gi|429962047|gb|ELA41591.1| hypothetical protein VICG_01339 [Vittaforma corneae ATCC 50505]
Length = 552
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 197/594 (33%), Positives = 295/594 (49%), Gaps = 113/594 (19%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELG 264
L G FV +G + S++REEA+ + G RVT SVS KT YL+ + +K KAKELG
Sbjct: 6 LKGNVFVFTGEM-SMDREEAKSRVLLLGARVTTSVSSKTTYLITGSEPGPSKIEKAKELG 64
Query: 265 TPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIER 324
T L+E+ ++ L K S + +A TS
Sbjct: 65 TKILSEEKFLEL-------------------------LDKYSFKMAKAMQTS-------- 91
Query: 325 MKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGT 384
V+SP K +++ + +W EKYRP T EIVGN+ ++QL F+ GT
Sbjct: 92 ---VSSPMNTK-LDVKTNHRSWAEKYRPATVEEIVGNKTAIEQLRL--------FIQNGT 139
Query: 385 KRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG 444
+ KAA+LSG PG+GKTTA VC+ G IE NASD R K
Sbjct: 140 EY-----------KAALLSGPPGVGKTTAVLAVCREQGITPIEFNASDLRSKKML----- 183
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI 504
A +I SN ++S + SK +V++MDEVDGM++ D+GGI +L++ IK +K+
Sbjct: 184 -----AETISNCTSNLSISKDWSVSK---SVIVMDEVDGMTS-DKGGIPELVSIIKKTKV 234
Query: 505 PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR 564
P+ICICND+ QK+++L +YC D+RFRK + I R+ + EG + E A+ E+
Sbjct: 235 PVICICNDKTHQKMRTLSSYCLDIRFRKLDPRTIMPRIKIVLEKEGKTLPEGAINEIIMN 294
Query: 565 VNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMD 624
NGDIR +N +Q + + V+ D I + L+ K+ F +LF G +
Sbjct: 295 SNGDIRYILNTIQSLVMK-PVLNLDFINKTLVK--KNILKGTFEIAAELFQKRG----IA 347
Query: 625 ERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIR-R 683
E+IDL D L+PL +QENY+ + + L + +AESIS DI + +I
Sbjct: 348 EKIDLYFEDNSLMPLFVQENYL--------KCAFRNLKEMLASAESISMSDIIDSRIHGT 399
Query: 684 NQQWQLSQSSSLASCIIP--AALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLED 741
Q+W L + SC+ P LMH + + F +LG+ S GKN RLL +
Sbjct: 400 EQEWSLMPYHAFFSCVYPLHGRLMHKRLD-----------FPLYLGQYSKFGKNNRLLTE 448
Query: 742 LHFHHLASRKSKLGRDTLRLDYFSLLLKQLT---------EPLRVLPKDELLRK 786
+ +H + K+ R + RL L+ K+ T + ++VL +LL++
Sbjct: 449 ICYHF----RPKVTRKSFRLFVGELIFKRFTNGLQEGNIGQSIKVLESTDLLKE 498
>gi|328873528|gb|EGG21895.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 1578
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 156/459 (33%), Positives = 249/459 (54%), Gaps = 39/459 (8%)
Query: 325 MKTVASPAKRKGQNIQQ-SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTG 383
M + PA K NI++ + + W +KY+P T ++I+GN ++ +H E +D
Sbjct: 1004 MDLIKLPASFK--NIKKGNDMMWVDKYKPTTSSDIIGNPGMI-------SHLKEFLMDFD 1054
Query: 384 TKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISK 443
K N A +++G PG+GKTT A ++ + +G+ IE+NASD+R K D I
Sbjct: 1055 KPLRKYKLN------AVLIAGPPGIGKTTCASMILKEMGYDVIEMNASDTRSKND--IDH 1106
Query: 444 GIGG-SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKI 501
+GG S+ SI + S N + K K +IMDEVDG S DRGGI ++I IK
Sbjct: 1107 LLGGVSDNTSITQF-----FSVN-KQVKTKKKAIIMDEVDGSSGNNDRGGIKEIIGMIKT 1160
Query: 502 SKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEEL 561
SK+P ICICND YS K+KSL +YC ++RF +P ++++ RL+QIA EG+++N+ E+L
Sbjct: 1161 SKVPFICICNDYYSTKIKSLKSYCLEMRFNRPTPKQVSDRLLQIAKNEGMQLNQYMAEKL 1220
Query: 562 ADRVNGDIRMAINQLQYMSL-SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK 620
DIR I+ +Q ++ + I +I +++ + KD + SPF A L
Sbjct: 1221 FLSTKNDIRQTIHLMQMLNRGNNEKINPLNIDKKIEMAVKDFETSPFEASSVLLS--SAN 1278
Query: 621 LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDE---VKRLSLIARAAESISDGDIF 677
++ER++L SD +L+PL++QENY+ P + D + L ++AAESIS+ D+
Sbjct: 1279 KTLNERMELYFSDYNLIPLMVQENYLTNVPRNQTTDRKGYTNEMELFSKAAESISESDVV 1338
Query: 678 NVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLR 737
+ +I +Q ++L + ++ S IIP L+HG + F +LGK S GK R
Sbjct: 1339 SKEIYSHQSFELLPTYAIMSTIIPCHLIHGSSTNF------YPTFPQYLGKQSNYGKQKR 1392
Query: 738 LLEDLHFHHLASRKSKLG-RDTLRLDYFSLLLKQLTEPL 775
+ +L H +S L + RL Y + + +P+
Sbjct: 1393 FVSELQLHMRSSSAQSLANKSETRLYYTPMFKHYMVQPM 1431
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 177 RGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVT 236
R M G+ PP+KG K P GAP CL F ++G LD ER E + ++ +GG+ +
Sbjct: 752 RQFLMKGGKCAPPPNKGSKPEPRGAPKCLAKKYFTVTGVLDCFERTEIKGFVQLYGGQFS 811
Query: 237 GSVSKKTNYLLCDEDIAGAKST----KAKELGTPFLTEDGLFDMIRAS 280
+V KK +++ E K + +E LTED MI S
Sbjct: 812 DNVIKKITHVVVGEGGGEKKKEIIDDRLREKSIVVLTEDEFLAMINNS 859
>gi|7493936|pir||T18306 replication factor C protein - Emericella nidulans
gi|2258283|gb|AAB63574.1| replication factor C like protein [Emericella nidulans]
gi|27735373|gb|AAB63523.2| replication factor C like protein [Emericella nidulans]
Length = 1092
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 201/646 (31%), Positives = 315/646 (48%), Gaps = 60/646 (9%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
F+ G + P G E+P GA +CL GLTFV +G LD+L REE + L+KR+GG+VT +
Sbjct: 303 FVFGGGKSRDPVSGGAELPVGAENCLAGLTFVFTGVLDTLGREEGQALVKRYGGKVTTAP 362
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVA 299
S KT++++ D +K + ++E+GLF++IR +A K +K
Sbjct: 363 SGKTSFVVLGSDAGPSKLATISKHKLKTISEEGLFELIRRLPANGGDGKAAEKYEAKKKE 422
Query: 300 ASLP-KKSPQNIEAKSTSAPKAPIERMKTVAS-----PAKRKGQNIQQSSLTWTEKYRPK 353
+K P I+A+ + ER K V S K K +N L WT KY P
Sbjct: 423 EDEKIRKMPAEIDAEEK---RNEAERRKEVKSGQTTQDVKAKKENNADDQL-WTSKYAPT 478
Query: 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTA 413
+ N I GN+ V++L WL +W + TK ++ + ++ ++ G PG+GKTTA
Sbjct: 479 SLNMICGNKGAVEKLQAWLRNWRKSAKANFTKPG---KDGSGLYRSVMIHGPPGIGKTTA 535
Query: 414 AKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK 473
A LV ++ G+ +E NASD+R K + S +G + S++ S S S
Sbjct: 536 AHLVAKLEGYDVVESNASDTRSKKLVE-SGLLGVLDTTSLQGYFST---SNKKVESGKKN 591
Query: 474 TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKP 533
VLIMDEVDGMSAGDRGG+ + A K ++IP+I ICN+R K+K + ++ FR+P
Sbjct: 592 LVLIMDEVDGMSAGDRGGVGAMAAIAKKTQIPLILICNERRLPKMKPFDHVTFEIPFRRP 651
Query: 534 RKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS--------- 584
+++ RL+ I E +++ L+ L + + DIR IN L + L S
Sbjct: 652 TVEQVRARLLTICFREKMKIPPQVLDSLIEGTHADIRQVINMLSAVRLDRSEQGDQTGQD 711
Query: 585 -VIKYDDIRQRLLSSAKDEDISPFTAVDKLFG----FNGGKLRMDERIDLSMSDPDLVPL 639
+ YD +Q + K + P+ V K+ ++++ +L +D + L
Sbjct: 712 YSLDYDQGKQMSKAWEKHIILKPWDIVGKILNPQMFSQSSTATLNDKSELYFNDHEFSYL 771
Query: 640 LIQENYINYRPSSAGRDE-----VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSS 693
++QENY+ +P+ A E +K L L AA SISDGD+ + I QQW L +
Sbjct: 772 MLQENYLRTKPTRANNYEGKERKLKLLELADNAASSISDGDLVDRMIHGSQQQWSLMPTH 831
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNL------RLLEDLHFHHL 747
++ S + PA+ M G +E+ F WLG+NS G + R + +H L
Sbjct: 832 AIFSFVRPASFMFGN--MMERPA-----FTSWLGQNSKQGLIIVFGVIAREADVVHAGKL 884
Query: 748 ASRKSKL----------GRDTLRLDYFSLLLKQLTEPLRVLPKDEL 783
+ ++ R +R Y LL +L + L V KD +
Sbjct: 885 SRYVKEIQGRMRLRASGDRHEVRQQYIPLLWDRLVKRLMVDGKDSV 930
>gi|82541068|ref|XP_724804.1| replication factor C, 140 kDa subunit [Plasmodium yoelii yoelii
17XNL]
gi|23479576|gb|EAA16369.1| replication factor C, 140 kDa subunit [Plasmodium yoelii yoelii]
Length = 888
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 184/567 (32%), Positives = 285/567 (50%), Gaps = 56/567 (9%)
Query: 210 FVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA-------GAKSTKAKE 262
FV++G + R++ ++ IK HGG V +VS +T+YL+ E + G K KA E
Sbjct: 188 FVLTGVFKTYSRDDLQNKIKEHGGSVMSAVSSRTHYLVHGEYLEDGRLYSEGKKYQKAYE 247
Query: 263 LG------TPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTS 316
L L E+ L M P + + K EK +K+ Q + +
Sbjct: 248 LSKQSKSIIKILNEEELLQMF----PNQQSNTEQEKNGQEKNGQ---EKNGQEKNGQEKN 300
Query: 317 APKAPIERMKTVASPAKRKGQNIQQS--------SLTWTEKYRPKTPNEIVGNQQLVKQL 368
P ++ + P + +QS + W +KY+P ++VGN Q V +L
Sbjct: 301 GPYQSVKHEQEQNMPYQSVKTGQEQSVKKVPQVLNQLWVDKYKPTKLEDLVGNTQNVFKL 360
Query: 369 HTWLAHWNEKFLDTGTKRNGKKQNDASAE----KAAILSGSPGMGKTTAAKLVCQMLGFQ 424
TWL+ W++ + G K+ K + E K A+LSG G+GKTT AK+V G+
Sbjct: 361 KTWLSSWDDVCIK-GLKKQVTKTFRGNFENINAKCALLSGPAGIGKTTTAKIVSMDSGYN 419
Query: 425 AIEVNASDSRGKADA-KISK-GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVD 482
IE NASD R KA KIS+ GG + S+ +N++L KT +IMDEVD
Sbjct: 420 VIEFNASDERNKAAVEKISEMATGGYSITSL----NNKSL---------KKTCIIMDEVD 466
Query: 483 GMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRL 542
GMS+GD+GG + ++ I+ +K PIICICNDR + K+++L N C DL+F P K + KRL
Sbjct: 467 GMSSGDKGGSSAILKLIEKTKCPIICICNDRQNSKMRTLANKCYDLKFTTPNKNSVVKRL 526
Query: 543 MQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDE 602
++I E L + ALE L + NGDIR +N LQ +S + I++ DI++ + +S K+
Sbjct: 527 LEICKNENLMMEPNALELLWESSNGDIRQILNALQLLSKTYKRIQFLDIKKDINNSNKNV 586
Query: 603 D--ISPFTAVDKLFGFN-GGKLRMDERIDLSMSDPDLVPLLIQENYIN-YRPSSAGRDEV 658
+PF KL F+ KL++ E +DL D +L+P I ENY N + + + +
Sbjct: 587 QSLANPFEITLKLLNFHESSKLKIREIMDLFFVDYELIPYFISENYTNIFNDNDKSNNPM 646
Query: 659 KRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERN 718
+ + A+ + +S + ++ + L S+ SC+ P + + + QG N
Sbjct: 647 NKWNTFAQISYDLSLAEKIKYNLKTTMDYSLLPHFSILSCVCPVMRIRSLK-SFMQGRIN 705
Query: 719 FNRFGGWLGKNSTMGKNLRLLEDLHFH 745
F GK ST KN RLL +L F+
Sbjct: 706 ---FPSAFGKISTFNKNKRLLNELCFN 729
>gi|195111811|ref|XP_002000470.1| GI10247 [Drosophila mojavensis]
gi|193917064|gb|EDW15931.1| GI10247 [Drosophila mojavensis]
Length = 1026
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 163/451 (36%), Positives = 245/451 (54%), Gaps = 49/451 (10%)
Query: 343 SLTWTEKYRPKTPNEIVGN---QQLVKQLHTWLAHWNEKFLDTGTKRNGKKQN------D 393
++ +KY+P + +IVG V +L WL+ W +++ K+ ++ N D
Sbjct: 464 NMALVDKYKPTSIKDIVGQAGANSNVTKLMNWLSKW---YVNHDGKKKLQRPNPWAKNDD 520
Query: 394 ASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSI 453
S KAA+LSG PG+GKTT A LV + LGF A+E NASD+R K K +
Sbjct: 521 GSFYKAALLSGPPGIGKTTTATLVTKELGFDAVEFNASDTRSKRLLK----------EEV 570
Query: 454 KELVSNEALSANMD---RSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICI 509
L+ N++L+ + ++ K VLIMDEVDGM+ DRGG+ +LIA IK S +PIIC+
Sbjct: 571 SSLLGNKSLAGYANGKTQAVSKKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSVPIICM 630
Query: 510 CNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDI 569
CNDR K++SLVNYC DLRF++PR ++I R+M I E ++++ LEE+ N DI
Sbjct: 631 CNDRNHPKIRSLVNYCYDLRFQRPRIEQIKGRIMSICFKEKIKMSPGKLEEIIGATNNDI 690
Query: 570 RMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK-LRMDERID 628
R IN + +S + ++ +AKD + P+ V K+F K + + ++ D
Sbjct: 691 RQTINHIALLSAGEQLPGNPSATPQV--AAKDLKLGPWEVVRKVFAAEEHKHMSIFDKCD 748
Query: 629 LSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQ 688
L D + PL +Q+NY+ P R+E+ LS +A A+++S GD+ + +IR N W
Sbjct: 749 LFFHDYSMAPLFVQQNYLQVTP-QGNRNEI--LSKVAATADALSLGDMVDKRIRANSAWS 805
Query: 689 LSQSSSLASCIIPAALMHGQRETLEQGERNFN---RFGGWLGKNSTMGKNLRLLEDLHFH 745
L + ++ S ++P M G NF F GWLGKNS K RL ++LH H
Sbjct: 806 LLPTQAVFSSLLPGEYMCG----------NFTGQINFPGWLGKNSRSNKRSRLAQELHDH 855
Query: 746 HLASRKSKLG-RDTLRLDYFSLLLKQLTEPL 775
+R G R ++RL+Y LL + PL
Sbjct: 856 ---TRICTSGSRQSVRLEYAPHLLGNIVRPL 883
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 65/99 (65%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + R + G KE+P+G+PDCL GLTF+++G L+S+ER+EA +IK GGRV V
Sbjct: 231 YQKYKNRSSCLNPGSKEIPKGSPDCLKGLTFLVTGILESMERDEAASVIKGFGGRVMTVV 290
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR 278
KK NYL+ E+ K +A+E L+EDGLFD+IR
Sbjct: 291 GKKLNYLVVGEEAGPKKLAQAEEFHVTILSEDGLFDLIR 329
>gi|66356684|ref|XP_625520.1| DNA replication repC1, AAA+ ATpase with a BRCT domain at the
N-terminus [Cryptosporidium parvum Iowa II]
gi|46226521|gb|EAK87515.1| DNA replication repC1, AAA+ ATpase with a BRCT domain at the
N-terminus [Cryptosporidium parvum Iowa II]
Length = 874
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 179/614 (29%), Positives = 308/614 (50%), Gaps = 82/614 (13%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA-------GAKS 257
G++ V++GT ++ R+E ED +K GG++T +VS +T+YL+ + G+K
Sbjct: 149 FNGMSIVVTGTFNNNSRQEIEDFVKILGGKLTSAVSGRTSYLIAGNSLEDGRSIEEGSKY 208
Query: 258 TKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSA 317
AK G L+ED ++ K +A ++S P + +
Sbjct: 209 RNAKSKGVNILSEDEFIEIYTNYKQKEAKYDSQS-----------PNRKSHGVFESGNKI 257
Query: 318 PKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE 377
+ + N +S WT++++P++ ++++GN +++K+L TWL+ W
Sbjct: 258 NEGNM------------NNSNFDGNSSLWTDRHKPESLDQVLGNGEVIKKLQTWLSDWKS 305
Query: 378 KFLDTGTKRNGKK----------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
++ G K+ K Q + +AA+LSG PG+GK+T A L+ + G+ IE
Sbjct: 306 VVIE-GKKKAPPKASFSPGSRFPQVENINARAALLSGPPGIGKSTVATLIAKKCGYIPIE 364
Query: 428 VNASDSRGK--ADAKISKGIGGSNANSIKELVSNEA-------LSANMDRSKHPKTVLIM 478
+NASD R K + +GG + ++ S+ + L+ NM +LIM
Sbjct: 365 MNASDDRTKEVIENLSESAVGGFSLSTFARKSSSSSQFGEEGGLNTNM--------LLIM 416
Query: 479 DEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEI 538
DE+DG+ DRGG A L I+ ++ PIICICNDR S+K+++L C DLRF +P K +I
Sbjct: 417 DEMDGLGGSDRGGAAALGRLIQKTRWPIICICNDRMSEKVRNLAPKCYDLRFSRPSKVQI 476
Query: 539 AKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSS 598
KR+ +IAN EG+++ A+E L + V D+R +N+LQ +SLS +++ D++ +
Sbjct: 477 IKRMQEIANKEGMKIEPNAIELLCESVGNDLRQILNELQLLSLSNINVRFSDVKTEISGH 536
Query: 599 AKDEDIS--PFTAVDKLFGFN-GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGR 655
KD ++ F+A KL + L +++++++ D DL+PLL++ENYI+ +G
Sbjct: 537 LKDVQVTLDVFSATKKLLTTSESSHLSINDKLEIFFIDFDLMPLLLEENYISALSVKSGG 596
Query: 656 DEV-----KRLSLIARAAESI-------SDGDIFNVQIRRNQQWQLSQSSSLASCIIPAA 703
+++++ + ES+ + D+FN ++R + +W L ++ + P
Sbjct: 597 GFGSGSSNQQMTVTPQMIESVLETANLFVEADVFNAKLRTDNEWSLLSEIAVNCAVAPG- 655
Query: 704 LMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKL-GRDTLRLD 762
+ L + E F WLGKNST KN RLL +L RK L+L
Sbjct: 656 -LCSTNSFLARPE-----FPKWLGKNSTTNKNKRLLSELMAIITVGRKGNCPSSKGLKLS 709
Query: 763 -YFSLLLKQLTEPL 775
Y L+ + T PL
Sbjct: 710 GYLDLIYFKATAPL 723
>gi|392921918|ref|NP_001256606.1| Protein RFC-1, isoform a [Caenorhabditis elegans]
gi|3875243|emb|CAA99812.1| Protein RFC-1, isoform a [Caenorhabditis elegans]
Length = 839
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 162/446 (36%), Positives = 243/446 (54%), Gaps = 43/446 (9%)
Query: 343 SLTWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHWNEKFLDTGTKRNGKK------QND 393
+L+W +KY+PK E+VG ++ + +L W+ W + L G K K D
Sbjct: 277 ALSWVDKYKPKRMGELVGQNGDKSPINKLLEWIKDWAKHNLGEGAKIKKPKPAPWMSSQD 336
Query: 394 ASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA--DAKISKGIGGSNAN 451
++ KAA+LSGSPG+GKTT A + CQ LG Q +E+NASD R K +AKI + G ++
Sbjct: 337 GTSFKAALLSGSPGVGKTTCAYMACQQLGLQLVEMNASDVRSKKHLEAKIGELSG---SH 393
Query: 452 SIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICIC 510
I++ + + ++ H +LIMDEVDGMS DR GI++LI IK SKIPIICIC
Sbjct: 394 QIEQFFGAKKCAPQDNQKVH--HILIMDEVDGMSGNEDRAGISELIQIIKESKIPIICIC 451
Query: 511 NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570
NDR K+++L NYC DLRF KPR + I R+M I + E +++ + L+E+ + D+R
Sbjct: 452 NDRQHPKIRTLANYCYDLRFPKPRVETIRSRMMTICSQEKMKIGKEELDEIIELSGHDVR 511
Query: 571 MAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLS 630
I LQ S + I Q KD + F+A +L + + E+ ++
Sbjct: 512 QTIYNLQMRSKGVGA----KINQ------KDMAVDAFSAARRLL---DSRTTLMEKQEMF 558
Query: 631 MSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLS 690
+D ++PL +Q+NY+N + + ++ + I +AA+ IS GD+ + QIR W+L
Sbjct: 559 FTDYGIMPLFVQDNYLNMK--NEKHSPIQAIRGIRKAADFISLGDLIDRQIRGGGSWKLL 616
Query: 691 QSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLAS 749
S+ S +PA G + + Q F WLGKNST GK RLL+ L H HL
Sbjct: 617 NEQSMISAALPAIATGGHLKAMIQ-------FPSWLGKNSTAGKRKRLLQQLVQHTHL-- 667
Query: 750 RKSKLGRDTLRLDYFSLLLKQLTEPL 775
K G + DY +L +++T+PL
Sbjct: 668 -KVSAGTHSFATDYAPMLRQKITKPL 692
>gi|341883312|gb|EGT39247.1| CBN-RFC-1 protein [Caenorhabditis brenneri]
Length = 842
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 173/458 (37%), Positives = 240/458 (52%), Gaps = 46/458 (10%)
Query: 331 PAKRKGQNIQQSSLTWTEKYRPKTPNEIVGN---QQLVKQLHTWLAHWNEKFLDTGTKRN 387
P K KG + L+W +KY+PK E+VG + + +L WL W + L G K
Sbjct: 266 PPKPKGPD---PVLSWVDKYKPKRLGELVGQHGEKSPMNKLMDWLRDWAKHNLGEGAKIK 322
Query: 388 GKK------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA--DA 439
K D + KAA+LSGSPG+GKTT A + CQ LG + +E+NASD R K +A
Sbjct: 323 KPKPAPWMASQDGTPFKAALLSGSPGVGKTTCAYMACQQLGLKLVEMNASDVRNKKHLEA 382
Query: 440 KISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIAS 498
KI + G ++ I+E + D H VLIMDEVDGMS DR GI++LI
Sbjct: 383 KIGELTG---SHQIEEFFGVKKSVPQDDSKVH--HVLIMDEVDGMSGNQDRAGISELIQI 437
Query: 499 IKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIAL 558
IK SKIPIICICNDR K++SL NYC DLRF KPR + I R+M I + E +++++ L
Sbjct: 438 IKESKIPIICICNDRMHPKIRSLANYCYDLRFSKPRVETIRSRMMTICSQEKVKISKEEL 497
Query: 559 EELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG 618
+EL + D+R I LQ S S + KD+ PF A +L
Sbjct: 498 DELIELSGHDVRQTIYNLQMRSKSSGA----------KVAKKDQAWGPFDAARRLL---D 544
Query: 619 GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFN 678
+ + E+ ++ D ++PL +QENY+N + E R + +AA+ IS GD+ +
Sbjct: 545 SRTTLLEKQEMFFVDYGIMPLFVQENYLNMKNDKHTPQEAIR--GMRKAADLISLGDLVD 602
Query: 679 VQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRL 738
QIR W+L S+ S +PA G + + Q F WLGKNST GK RL
Sbjct: 603 RQIRGGGSWKLLNEQSMLSAALPAMATGGHLKAMIQ-------FPSWLGKNSTAGKKKRL 655
Query: 739 LEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
L+ L H HL K G + DY +L +++T+PL
Sbjct: 656 LQQLVRHTHL---KVSAGTHSFATDYAPMLRQKITKPL 690
>gi|308480266|ref|XP_003102340.1| CRE-RFC-1 protein [Caenorhabditis remanei]
gi|308262006|gb|EFP05959.1| CRE-RFC-1 protein [Caenorhabditis remanei]
Length = 835
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 172/461 (37%), Positives = 246/461 (53%), Gaps = 52/461 (11%)
Query: 331 PAKRKGQNIQQSSLTWTEKYRPKTPNEIVGN---QQLVKQLHTWLAHWNEKFLDTGTKRN 387
P K KG + L+W +KY+PK +++VG + + +L WL +W L G K
Sbjct: 261 PTKPKGP---EPVLSWVDKYKPKRMDQLVGQNGEKSPMNKLMDWLKNWARHNLGEGAKIK 317
Query: 388 GKK------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA--DA 439
K Q+D + KAA+LSG+PG+GKTT A + CQ LG+Q +E+NASD R K +A
Sbjct: 318 KPKPPPFMAQSDGTPFKAALLSGTPGVGKTTCAYMACQQLGYQLVEMNASDVRNKKHLEA 377
Query: 440 KISKGIGGSNANS---IKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADL 495
KI + G +K+ V + L + VLIMDEVDGMS DR GI++L
Sbjct: 378 KIGELSGSHQIEQFFGVKKCVPQDNLKVHH--------VLIMDEVDGMSGNEDRAGISEL 429
Query: 496 IASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNE 555
I IK SKIPIICICNDR K++SL N+C DLRF KPR + I R+M I + E L++
Sbjct: 430 IQIIKDSKIPIICICNDRQHPKIRSLANHCFDLRFSKPRVESIRSRMMTICSQEKLKIKV 489
Query: 556 IALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615
L+EL + D+R I LQ S K D + S KD+ PF A +L
Sbjct: 490 EELDELIELSGHDVRQTIYNLQMRS------KSADSK----VSKKDQAWGPFEAARRLL- 538
Query: 616 FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGD 675
+ + E+ ++ D ++PL +QENY+N + + +++ + I +AA+ IS GD
Sbjct: 539 --DSRTTLMEKQEMFFVDYGIMPLFVQENYLNMK--NDKHSQLQAIRGIRKAADFISLGD 594
Query: 676 IFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKN 735
+ + QIR W+L S+ S +PA G +++ Q F WLGKNST GK
Sbjct: 595 LVDKQIRGGGSWKLLNEQSMLSAALPAMATGGHLKSMLQ-------FPSWLGKNSTAGKK 647
Query: 736 LRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
RLL+ L H HL K + DY +L +++T+PL
Sbjct: 648 KRLLQQLVQHTHL---KVSASTHSFATDYAPMLRQKITKPL 685
>gi|149248210|ref|XP_001528492.1| activator 1 95 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146448446|gb|EDK42834.1| activator 1 95 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 709
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 185/595 (31%), Positives = 296/595 (49%), Gaps = 52/595 (8%)
Query: 216 LDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFD 275
+ +L+R AE +R+G +VT S+SK T++++ D +K K K+LGT + EDG
Sbjct: 1 MPNLDRNYAESTAQRYGAKVTKSISKNTSFVVIGADAGWSKVDKIKKLGTKTIDEDGFLQ 60
Query: 276 MIR----------ASKPMKALAQAESKKSVE----------KVAASLPKKSPQNIEAKST 315
++ A++ K + + +K +E + A + +K + +E
Sbjct: 61 LLEKMPEDGGSGEAAQKAKLAREEQERKVIEDAEKEERLEREEAEARERKRRKELENSDR 120
Query: 316 SAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHW 375
+ + P + K Q + WT+K+ PK +++ GN+ VK+L WL +W
Sbjct: 121 NLQSQSSSGSSQLRMPPEPK-QEVAAKDKLWTDKHAPKDFSQLCGNKGQVKKLKDWLENW 179
Query: 376 NE---KFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432
E + + G G +AA++SG PG+GKTTAA +V LGF +E NASD
Sbjct: 180 FEYKARGFNMGKDSPGN-------FRAALISGPPGIGKTTAAHMVANSLGFDVLEKNASD 232
Query: 433 SRGKA--DAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG 490
R K+ ++ I +G ++ + E N + ++ K LIMDEVDGMS+GD G
Sbjct: 233 VRSKSLLNSTIKSILGNTSVVGFFKHRGEEVKQENSENNR--KICLIMDEVDGMSSGDHG 290
Query: 491 GIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEG 550
G L +I+ P+I ICND+ K+++ DL FR+P + E+ RLM IA EG
Sbjct: 291 GAGALSQFCRITNTPLILICNDKSLPKMRTFDKVTYDLPFRRPTENEVRSRLMTIALREG 350
Query: 551 LEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAV 610
++++ + +L + DIR IN L +S + I ++++ S K + PF
Sbjct: 351 VKLDPSIIGQLVQATSNDIRQMINLLSTVSKTQKHIGALNVQEIQQSWKKQVILKPFDIA 410
Query: 611 DKLFG---FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARA 667
+L + K ++E++DL +D D PL+IQENY+N RP G + +A+A
Sbjct: 411 GRLLSLAVWTAPKQNLNEKLDLYFNDIDFAPLMIQENYLNTRPRLPG----SHIRHVAQA 466
Query: 668 AESISDGDIFNVQIRRN-QQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWL 726
A+ IS D N IR + QQW L L S + P+ + GQ G NF+ WL
Sbjct: 467 ADDISSSDSVNSLIRSSEQQWSLLPFHGLLSSVKPSYEVAGQLT----GRINFS---AWL 519
Query: 727 GKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKD 781
G+NS K R+L++L +H ++ + LRLDY + L +L PL+ KD
Sbjct: 520 GQNSKQMKFQRMLQELQYH--TRIRTSTTKQELRLDYMNPLWVKLNYPLKKYGKD 572
>gi|118397505|ref|XP_001031085.1| BRCT domain containing protein [Tetrahymena thermophila]
gi|89285407|gb|EAR83422.1| BRCT domain containing protein [Tetrahymena thermophila SB210]
Length = 1123
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 196/647 (30%), Positives = 307/647 (47%), Gaps = 70/647 (10%)
Query: 187 KDPPHKGEKEVPEGA--PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTN 244
K PP K +K G D L G T V +G D + R+ ++ G + TGSVS KT
Sbjct: 316 KAPPQK-DKNSSNGNIDSDILAGQTIVFTGDFDGISRDTMSKIVTDMGAKNTGSVSGKTT 374
Query: 245 YLLCDEDI-------AGAKSTKAKELGTPFLTEDGLFDMIR--ASKPMKALAQAESKKSV 295
L+ + G K AK+ GT + + D ++ K ++ A S
Sbjct: 375 LLVHGSVLEDGRPPEQGKKYQTAKQKGTKIMNQSQFSDYLKDLTGKSLEDYANVGQNGSR 434
Query: 296 EKVAASLPKKS---PQNIEAKSTSAPK---APIERMKTVASPAKRKGQNIQQSSLT---- 345
A++P + PQ + K + K P+ + K + Q QQ +
Sbjct: 435 FDKFAAVPNNNNNNPQTQQKKDSQPSKKILQPLNKPKEATKYDPKSKQQNQQPQMVIHKP 494
Query: 346 ------WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKR---------NGKK 390
WTEKY P + N +GNQ+ +++ WL W E + K+ G
Sbjct: 495 PKQEQIWTEKYAPSSINLCIGNQKNYEKMMEWLHDWVEVVIKGNKKQVKNSFFNRAQGVP 554
Query: 391 QNDASAE-KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSN 449
N ++ KA +LSG PG+GKTT+ +L+ + +G++ E NASD R K ++ +G
Sbjct: 555 DNSSNVNAKACLLSGPPGIGKTTSVRLIAKFMGYEIREWNASDERNKKS--VNNILGDLK 612
Query: 450 ANSIKELV--------SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKI 501
+NSI L+ +N ++ + K +++MDEVDGMS+GDRGG LI +IK
Sbjct: 613 SNSILNLLKKNNTSDQTNNKADDEVEAKTNKKFIILMDEVDGMSSGDRGGNQALIDAIKN 672
Query: 502 SKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEI-ALEE 560
+ +PI CICNDR + K++SL N+C D++F KP KQ++AK + + EG + EI +LE
Sbjct: 673 TNVPIFCICNDRMNPKIRSLANHCYDIKFIKPAKQDVAKYMKNVCEQEGFKDVEIESLEA 732
Query: 561 LADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDI--SPFTAVDKLF-GFN 617
+++R D+R +N L+ M S ++L S KD + F A +L F
Sbjct: 733 ISERFGNDLRQTLNFLE-MHFKTSKRLQGINSKQLNSGQKDATVMLDAFQASTQLMQSFK 791
Query: 618 GGKLRMDERIDLSMSDPDLVPLLIQENYIN-YRP-SSAGRDE------VKRLSLIARAAE 669
K+ + ERI+L D DL+PLL+ +NY++ +P A +++ VK L + A
Sbjct: 792 FQKMTLRERIELFFIDYDLIPLLVHQNYLDTIKPREDASKNKKNDNFNVKELQNLVDATS 851
Query: 670 SISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKN 729
SI+ D+ + IR++ W L + + SCI P + + + RF WLGK
Sbjct: 852 SIAQSDLLSKSIRQSGNWSLLPNFAFTSCIYPCDKVCEDKPI-------YPRFPEWLGKF 904
Query: 730 STMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLR 776
T K R L + F S+ R ++ DY LLK + L+
Sbjct: 905 QTTKKTTRELRE--FRVSLSKSISGSRFAVKFDYVPFLLKIILSHLK 949
>gi|297673340|ref|XP_002814727.1| PREDICTED: replication factor C subunit 1 [Pongo abelii]
Length = 667
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 165/451 (36%), Positives = 238/451 (52%), Gaps = 75/451 (16%)
Query: 343 SLTWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHW------NEKFLDTGTKRNGKKQND 393
+L W +KY+P + I+G +Q +L WL +W ++K K +GK +D
Sbjct: 136 NLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSGK--DD 193
Query: 394 ASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNAN 451
S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K+ K +++ + N
Sbjct: 194 GSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESL---NNT 250
Query: 452 SIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICIC 510
SIK SN A S S K LIMDEVDGM+ DRGGI +LI IK +KIPIIC+C
Sbjct: 251 SIKGFYSNGAAS-----SVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMC 305
Query: 511 NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570
NDR K++SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR
Sbjct: 306 NDRNHPKVRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIR 365
Query: 571 MAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLS 630
++ L + YD + + KD ++M
Sbjct: 366 QVLHNLSMWCARSKALTYDQAKADSHRAKKD-------------------IKM------- 399
Query: 631 MSDPDLVPLLIQENYINYRPSSAGR------DEVKRLSLIARAAESISDGDIFNVQIRRN 684
ENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR
Sbjct: 400 ------------ENYIHGKPVAAGVSVQSWGDMKKHLMLLSRAADSICDGDLVDSQIRSK 447
Query: 685 QQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHF 744
Q W L + ++ + ++P LM G F F WLGK+S+ GK+ R+++DL
Sbjct: 448 QNWSLLPTQAIYASVLPGELMRGYMT-------QFPTFPSWLGKHSSTGKHDRIVQDLAL 500
Query: 745 HHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
H S ++ + T+ +DY S L L +PL
Sbjct: 501 H--MSLRTYSSKRTVNMDYLSHLRDALVQPL 529
>gi|430810977|emb|CCJ31500.1| unnamed protein product [Pneumocystis jirovecii]
Length = 659
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 177/545 (32%), Positives = 276/545 (50%), Gaps = 61/545 (11%)
Query: 216 LDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFD 275
+ S++REE +LIK++GG+VT + S KT++++ ED K K+ + E+GLF
Sbjct: 1 MKSIDREEGHNLIKKYGGKVTNAPSSKTSFVVLGEDAGPKKIEVIKKNNLKTIDENGLFY 60
Query: 276 MIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRK 335
+I+ S + + A+ K+ ++ EA+ + AP K
Sbjct: 61 LIKN--------MPTSGGNTKAAQAAQKKREEEDQEAREMAKSMAP-----------KTS 101
Query: 336 GQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDAS 395
QS WT KY P+T EI GN+ LV++L WL W + G R
Sbjct: 102 EMQKSQSCQLWTTKYAPRTLKEICGNKSLVEKLQKWLHDWLSESDGLGFYR--------- 152
Query: 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK--ADAKISKGIGGSNANSI 453
A ++SG PG+GKTT+A LV + G+ +E NASD+R + + ++K ++ N
Sbjct: 153 ---AVLISGPPGIGKTTSAHLVASLEGYDVLEFNASDTRSRKLLEESLNKVYNNTSLNGF 209
Query: 454 KELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDR 513
L A K K V+IMDEVDG+S+GD+GGI +L + IK ++IPIICICNDR
Sbjct: 210 FLLDEQTA------EKKKNKFVIIMDEVDGVSSGDQGGIGELNSFIKKTQIPIICICNDR 263
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
S+KL L DL+FR+P + R+M IA EGL++ A+++LA+ +GDIR I
Sbjct: 264 ASRKLLPLDRTTFDLKFRRPDVNSLRSRIMSIAYREGLKLEPQAIDQLAESTHGDIRQII 323
Query: 574 NQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGG------KLRMDERI 627
N L LS + + DD + ++ K + P+ V K GG K+ + ++I
Sbjct: 324 NILSSWKLSQNSMNIDDGKNAAKAAEKHIIMKPWDIVGKFLS--GGIFKHTSKVTLSDKI 381
Query: 628 DLSMSDPDLVPLLIQENYINYRPSSAG------RDEVKRLSLIARAAESISDGDIFNVQI 681
+L +D +L L++QENY+ +P + + + L LI A+E+IS D+ + I
Sbjct: 382 ELYFNDHELSHLMLQENYLKTQPDTLNSIVNLKQKNHEHLKLIENASEAISRSDLIDFMI 441
Query: 682 RRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLE 740
QQ W L ++ SC+IPA + G G ++ F LG S K ++ L+
Sbjct: 442 HGPQQHWSLMPMHAVFSCVIPAFYVSG------FGTSQYS-FTSVLGNISKANKLIKYLQ 494
Query: 741 DLHFH 745
+ H
Sbjct: 495 SIQTH 499
>gi|170574641|ref|XP_001892902.1| ATPase, AAA family protein [Brugia malayi]
gi|158601324|gb|EDP38263.1| ATPase, AAA family protein [Brugia malayi]
Length = 970
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 173/486 (35%), Positives = 251/486 (51%), Gaps = 57/486 (11%)
Query: 311 EAKSTSAPKAPIERMKT--------VASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGN- 361
E KS+ PK I +M+T + SP + + L W +KY+P +VG
Sbjct: 360 EQKSSKMPK--ISKMETSEFDDSVKIESPTE------EDKCLPWVDKYKPSNIKHLVGQN 411
Query: 362 --QQLVKQLHTWLAHWNEKFLDTGTKRNGKK------QNDASAEKAAILSGSPGMGKTTA 413
+ + +L WL +W + L G K+ + QND +A KA +LSG PG+GKTT
Sbjct: 412 GEKSPMNKLLGWLRNWAKNHLGAGGKQKKARPPPWLAQNDGTAFKAVMLSGPPGVGKTTC 471
Query: 414 AKLVCQMLGFQAIEVNASDSRGKA--DAKISKGIGGSNANSIKELVSNEALSANMDRSKH 471
A + C+ L + +E NASD R K +A+ S+ IG I + V N +++ + S
Sbjct: 472 AVMACKELKLRYVEKNASDVRNKKALEAQTSEIIG---CEQIYDYV-NGSVTRKRNTSSE 527
Query: 472 PKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRF 530
VLIMDEVDGMS D R GIA+LI IK + IPIICICNDR SQK++SLVNYC D+RF
Sbjct: 528 ITHVLIMDEVDGMSGNDDRAGIAELIQMIKETLIPIICICNDRQSQKMRSLVNYCFDIRF 587
Query: 531 RKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDD 590
++PR ++I RL+ IA E L+V++ ++E+ + D+R +I LQ + + +
Sbjct: 588 QRPRVEQIRARLLTIACQEHLKVDKEEMDEIIEAAQHDVRQSIYNLQLLGSGGNGKEM-- 645
Query: 591 IRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRP 650
+KD ++PF A +L + + E+ + DP ++PL +QENY +
Sbjct: 646 -------QSKDAALNPFEAARRLLNC---ETQAWEKQQMFFVDPSIMPLFVQENYPFVQN 695
Query: 651 SSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRE 710
S E RL + +AA SIS+GDI + IR W L +L S + P M+G
Sbjct: 696 SKMSIGE--RLHALKKAANSISEGDIIDRVIRTTGAWTLLNEQALFSSVAPTFYMNGYM- 752
Query: 711 TLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLK 769
+ F WLGKNST K RLL L H +L + + L + LDY +L
Sbjct: 753 ------KGMINFPSWLGKNSTFNKRQRLLRQLATHTYLKTFAAVL---PMVLDYVPVLRH 803
Query: 770 QLTEPL 775
PL
Sbjct: 804 NYCRPL 809
>gi|324502655|gb|ADY41166.1| Replication factor C subunit 1 [Ascaris suum]
Length = 1002
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 162/454 (35%), Positives = 253/454 (55%), Gaps = 48/454 (10%)
Query: 338 NIQQSSLTWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHWNEKFLDTGTKRNGKK---- 390
+I +L W +KY+P + ++VG ++ + +L WL W + L K+ +
Sbjct: 423 HISPPTLPWVDKYKPTSLKQLVGQNGDKSPMNKLLGWLRDWPKYHLGDAAKQKRPRPPPW 482
Query: 391 --QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA--DAKISKGIG 446
Q+D ++ KA +LSG PG+GKTT A + C+ LG Q +E+NASD+R K ++K+++ IG
Sbjct: 483 MAQSDGTSFKAILLSGPPGIGKTTCALMACKELGLQFVEMNASDARNKKFLESKVAELIG 542
Query: 447 GSNANSIKELVSNEALS-ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKI 504
+ I E ++ A D H VLIMDEVDGMS DR G+++LI I+ ++I
Sbjct: 543 ---CHQIDEYFGGKSRKVAKADELGH---VLIMDEVDGMSGNEDRAGLSELIQMIRETRI 596
Query: 505 PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR 564
PIICICNDR S K++SLVNYC D+RF++PR ++I R+ IA E L++++ ++E+ +
Sbjct: 597 PIICICNDRQSPKMRSLVNYCFDVRFQRPRVEQIRSRMQTIAFQEKLKLSKEQIDEVIEA 656
Query: 565 VNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMD 624
N D+R I LQ +S+ K +I+Q KD ++ F A ++ + M
Sbjct: 657 SNHDVRQTIYNLQLLSMGG---KSGEIQQ------KDCAVNTFEAARRILSADTS---MV 704
Query: 625 ERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRN 684
E+ ++ +D ++PL IQENY + S ++ ++L+ + +AA+SIS GDI IR
Sbjct: 705 EKQEMFFTDYTIIPLFIQENYPSIH--SNKMNDSQKLNALRKAADSISQGDIVERTIRTT 762
Query: 685 QQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHF 744
W L +L S I+P+ M+G +++ N F WLGKNS K RL+ L
Sbjct: 763 GSWGLLNEQALFSSILPSMYMNGYLKSM------IN-FPSWLGKNSMTNKRQRLMRQLAS 815
Query: 745 H-HLASRKSKLGRD--TLRLDYFSLLLKQLTEPL 775
H HL K+ D +L DY +L +L PL
Sbjct: 816 HTHL-----KISADCHSLVTDYVPVLRDRLCRPL 844
>gi|221507917|gb|EEE33504.1| replication factor C subunit, putative [Toxoplasma gondii VEG]
Length = 1260
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 200/618 (32%), Positives = 296/618 (47%), Gaps = 106/618 (17%)
Query: 200 GAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTK 259
G+ C G TFV +G LDS+ REEA + +GGR T +VS +T+YL +AGA
Sbjct: 462 GSTSCFAGKTFVFTGVLDSMAREEAVSAVVGNGGRCTSAVSGRTDYL-----VAGA---- 512
Query: 260 AKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVA----------ASLPKKSPQ- 308
L EDG D+ SK KAL K +K + A LP+ + +
Sbjct: 513 --------LLEDGR-DVTTGSKYRKALQLMHDGKGKQKTSLKILHEQEFLAMLPENAEKK 563
Query: 309 -NIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQS-----SLTWTEKYRPKTPNEIVGNQ 362
+EA+ + +E KTV S + Q S +L W EKYRPK ++ VGN+
Sbjct: 564 PTLEARQLQEETSRLESAKTVKSDGSADEPDRQHSDENSGTLLWAEKYRPKRADDFVGNR 623
Query: 363 QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASA-------------EKAAILSGSPGMG 409
+ ++ L TWLA W + L G K+ ++ A + +AA+LSG PG+G
Sbjct: 624 EHLRTLQTWLADWADVCLH-GIKKKPPPRSSAPSFSPYGFAPTINLNARAALLSGPPGIG 682
Query: 410 KTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI--GGSNANSIKELVSNEALSANMD 467
KTTAA+L + G+ +E NASD+R KA + + GG +S + NEA +
Sbjct: 683 KTTAARLAAEAAGYDVLEYNASDARNKAHIEDIGNMTSGGLTLHSFLDQ-KNEASRGSPG 741
Query: 468 R-SKHPK-TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
R +K P ++MDEVDG+S GDRGG ++ I+ SK PIICICNDR K++++ + C
Sbjct: 742 RNAKRPMGACVLMDEVDGLSGGDRGGAQAIVKLIETSKCPIICICNDRMHPKVRTIASKC 801
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL-SLS 584
DLRF P + R+ +IA AE L ++ A++ L + GD+R + LQ ++ +
Sbjct: 802 LDLRFHPPHMTALRSRVEKIAAAEDLSLDPQAVDYLCESAGGDLRQILTSLQMIAYETRE 861
Query: 585 VIKYDDIRQR-----LLSSAKDEDI--SPFTAVDKLF-GFNGGKLRMDERIDLSMSDPDL 636
K D + R + KDE + PF +L KL +++D SD DL
Sbjct: 862 KAKEKDWKSREEKADFSTGLKDEQVMHGPFECCKQLLDAHQSSKLSRRQKLDKFFSDYDL 921
Query: 637 VPLLIQENYIN-YR--------PS---------------------------SAGRDEVKR 660
+PLLIQENY+ +R PS S ++
Sbjct: 922 IPLLIQENYLEAFRQGMQRGSSPSAEKFSSPHTFSMTKKTSLSSASSRVGVSTQPNDCFV 981
Query: 661 LSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCI-IPAALMHGQRETLEQGERNF 719
++L+A AA + + DI N +R +QQW + C+ +PA + QG
Sbjct: 982 INLVASAACDLVEADIMNNVLRVSQQWGMLPDIGFLCCVSLPAKVEKA------QGFLGR 1035
Query: 720 NRFGGWLGKNSTMGKNLR 737
+F WLG+NST K+ R
Sbjct: 1036 VQFPSWLGRNSTQTKHKR 1053
>gi|213972533|ref|NP_001135428.1| germ line transcription factor 1 [Nasonia vitripennis]
Length = 1100
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 154/439 (35%), Positives = 238/439 (54%), Gaps = 31/439 (7%)
Query: 348 EKYRPKTPNEIVG---NQQLVKQLHTWLAHWNE---KFLDTGTKRNGKKQNDASAEKAAI 401
EKYRPK +I+G ++ K+LH WL +W++ K + K + + KAA+
Sbjct: 544 EKYRPKELKQIIGQTGDKSNAKKLHFWLTNWHKNHGKDAKGAKPKFSYKDDTGTIYKAAL 603
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNAN-SIKELVSNE 460
LSG PG+GKTT A +VC LG++ +E NASD+R K + + I G +N ++K ++N
Sbjct: 604 LSGPPGIGKTTTAYVVCAQLGYEVLEFNASDTRSKK--LLQEEIAGILSNKTVKSFLTN- 660
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLK 519
+ PK VL+MDEVDGM+ DRGG+ +LIA IK +++PIICICNDR SQK+K
Sbjct: 661 ---GQEKKKNPPKHVLLMDEVDGMAGNEDRGGMQELIAFIKSTEVPIICICNDRMSQKIK 717
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+L NY DLRF+KPR ++I +M + EG+ V L + N DIR IN + +
Sbjct: 718 TLANYTFDLRFQKPRLEQIRAAMMSMCYKEGITVTAPELTAIIQSTNQDIRQVINHVAML 777
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVP 638
S K + + K+ + P+ V K+F + K + + ++ DL D ++
Sbjct: 778 SAKSQTEKESHEKTKY----KNLKLGPWDVVRKVFSADEHKNMSIHDKSDLFFHDYNIAG 833
Query: 639 LLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASC 698
L ++ENY++ P S R+E+ +A+ ++S++ GD IR Q W L + S
Sbjct: 834 LFVEENYLSVTP-SGPRNEL--FDKLAKCSDSLAIGDTIENAIRGKQAWGLLPVQACFSS 890
Query: 699 IIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDT 758
+IP ++M G + N F WLG+NS K RLL+D+ H A + ++
Sbjct: 891 VIPGSVMSG----FINSQIN---FPSWLGRNSKRSKCDRLLQDITVH--ARITTGASKEA 941
Query: 759 LRLDYFSLLLKQLTEPLRV 777
+ LDY +L+ + PL V
Sbjct: 942 INLDYLKMLVDSIVRPLAV 960
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 81/127 (63%), Gaps = 7/127 (5%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
++N G ++P G KE+PEGA CL L+F+I+G LDSLER EAE+LI ++GGR+ S
Sbjct: 312 NYLNRGGARNP---GSKEIPEGAEQCLANLSFLITGVLDSLERGEAEELITKYGGRMLHS 368
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKK NY++ E+ +K KA+ L ++EDGL ++IR ++P A A SKK V
Sbjct: 369 VSKKLNYIIIGEEAGPSKLAKAESLNIKKISEDGLLELIR-TRPAGASA---SKKPVNDA 424
Query: 299 AASLPKK 305
S +K
Sbjct: 425 DGSHKRK 431
>gi|237839249|ref|XP_002368922.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
gi|211966586|gb|EEB01782.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
Length = 1260
Score = 248 bits (634), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 199/618 (32%), Positives = 296/618 (47%), Gaps = 106/618 (17%)
Query: 200 GAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTK 259
G+ C G TFV +G LDS+ REEA + +GGR T +VS +T+YL +AGA
Sbjct: 462 GSTSCFAGKTFVFTGVLDSMAREEAVSAVVGNGGRCTSAVSGRTDYL-----VAGA---- 512
Query: 260 AKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVA----------ASLPKKSPQ- 308
L EDG D+ SK KAL K +K + A LP+ + +
Sbjct: 513 --------LLEDGR-DVTTGSKYRKALQLMHDGKGKQKTSLKILHEQEFLAMLPENAEKK 563
Query: 309 -NIEAKSTSAPKAPIERMKTV-----ASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQ 362
+EA+ + +E KTV A R + +L W EKYRPK +++VGN+
Sbjct: 564 PTLEARQLQEETSRLESAKTVKSDGSADEPDRHHSDENSGTLLWAEKYRPKRADDVVGNR 623
Query: 363 QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASA-------------EKAAILSGSPGMG 409
+ ++ L TWLA W + L G K+ ++ A + +AA+LSG PG+G
Sbjct: 624 EHLRTLQTWLADWADVCLH-GIKKKPPPRSSAPSFSPYGFAPTINLNARAALLSGPPGIG 682
Query: 410 KTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI--GGSNANSIKELVSNEALSANMD 467
KTTAA+L + G+ +E NASD+R KA + + GG +S + NEA +
Sbjct: 683 KTTAARLAAEAAGYDVLEYNASDARNKAHIEDIGNMTSGGLTLHSFLDQ-KNEASRGSPG 741
Query: 468 R-SKHPK-TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
R +K P ++MDEVDG+S GDRGG ++ I+ SK PIICICNDR K++++ + C
Sbjct: 742 RNAKRPMGACVLMDEVDGLSGGDRGGAQAIVKLIETSKCPIICICNDRMHPKVRTIASKC 801
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL-SLS 584
DLRF P + R+ +IA AE L ++ A++ L + GD+R + LQ ++ +
Sbjct: 802 LDLRFHPPHMAALRSRVEKIAAAEDLSLDPQAVDYLCESAGGDLRQILTSLQMIAYETRE 861
Query: 585 VIKYDDIRQR-----LLSSAKDEDI--SPFTAVDKLF-GFNGGKLRMDERIDLSMSDPDL 636
K D + R + KDE + PF +L KL +++D SD DL
Sbjct: 862 KAKEKDWKSREEKADFSTGLKDEQVMHGPFECCKQLLDAHQSSKLSRRQKLDKFFSDYDL 921
Query: 637 VPLLIQENYIN-YR--------PS---------------------------SAGRDEVKR 660
+PLLIQENY+ +R PS S ++
Sbjct: 922 IPLLIQENYLEAFRQGMQRGSSPSAEKFSSPHTFSMTKKTSLSSASSRVGVSTQPNDCFV 981
Query: 661 LSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCI-IPAALMHGQRETLEQGERNF 719
++L+A AA + + DI N +R +QQW + C+ +PA + QG
Sbjct: 982 INLVASAACDLVEADIMNNVLRVSQQWGMLPDIGFLCCVSLPAKVEKA------QGFLGR 1035
Query: 720 NRFGGWLGKNSTMGKNLR 737
+F WLG+NST K+ R
Sbjct: 1036 VQFPSWLGRNSTQTKHKR 1053
>gi|221483441|gb|EEE21760.1| replication factor C subunit, putative [Toxoplasma gondii GT1]
Length = 1260
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 199/618 (32%), Positives = 295/618 (47%), Gaps = 106/618 (17%)
Query: 200 GAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTK 259
G+ C G TFV +G LDS+ REEA + +GGR T +VS +T+YL +AGA
Sbjct: 462 GSTSCFAGKTFVFTGVLDSMAREEAVSAVVGNGGRCTSAVSGRTDYL-----VAGA---- 512
Query: 260 AKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVA----------ASLPKKSPQ- 308
L EDG D+ SK KAL K +K + A LP+ + +
Sbjct: 513 --------LLEDGR-DVTTGSKYRKALQLMHDGKGKQKTSLKILHEQEFLAMLPENAEKK 563
Query: 309 -NIEAKSTSAPKAPIERMKTV-----ASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQ 362
+EA+ + +E KTV A R + +L W EKYRPK ++ VGN+
Sbjct: 564 PTLEARQLQEETSRLESAKTVKSDGSADEPDRHHSDENSGTLLWAEKYRPKRADDFVGNR 623
Query: 363 QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASA-------------EKAAILSGSPGMG 409
+ ++ L TWLA W + L G K+ ++ A + +AA+LSG PG+G
Sbjct: 624 EHLRTLQTWLADWADVCLH-GIKKKPPPRSSAPSFSPYGFAPTINLNARAALLSGPPGIG 682
Query: 410 KTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI--GGSNANSIKELVSNEALSANMD 467
KTTAA+L + G+ +E NASD+R KA + + GG +S + NEA +
Sbjct: 683 KTTAARLAAEAAGYDVLEYNASDARNKAHIEDIGNMTSGGLTLHSFLDQ-KNEASRGSPG 741
Query: 468 R-SKHPK-TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
R +K P ++MDEVDG+S GDRGG ++ I+ SK PIICICNDR K++++ + C
Sbjct: 742 RNAKRPMGACVLMDEVDGLSGGDRGGAQAIVKLIETSKCPIICICNDRMHPKVRTIASKC 801
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL-SLS 584
DLRF P + R+ +IA AE L ++ A++ L + GD+R + LQ ++ +
Sbjct: 802 LDLRFHPPHMAALRSRVEKIAAAEDLSLDPQAVDYLCESAGGDLRQILTSLQMIAYETRE 861
Query: 585 VIKYDDIRQR-----LLSSAKDEDI--SPFTAVDKLF-GFNGGKLRMDERIDLSMSDPDL 636
K D + R + KDE + PF +L KL +++D SD DL
Sbjct: 862 KAKEKDWKSREEKADFSTGLKDEQVMHGPFECCKQLLDAHQSSKLSRRQKLDKFFSDYDL 921
Query: 637 VPLLIQENYIN-YR--------PS---------------------------SAGRDEVKR 660
+PLLIQENY+ +R PS S ++
Sbjct: 922 IPLLIQENYLEAFRQGMQRGSSPSAEKFSSPHTFSMTKKTSLSSASSRVGVSTQPNDCFV 981
Query: 661 LSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCI-IPAALMHGQRETLEQGERNF 719
++L+A AA + + DI N +R +QQW + C+ +PA + QG
Sbjct: 982 INLVASAACDLVEADIMNNVLRVSQQWGMLPDIGFLCCVSLPAKVEKA------QGFLGR 1035
Query: 720 NRFGGWLGKNSTMGKNLR 737
+F WLG+NST K+ R
Sbjct: 1036 VQFPSWLGRNSTQTKHKR 1053
>gi|145552994|ref|XP_001462172.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124430010|emb|CAK94799.1| unnamed protein product [Paramecium tetraurelia]
Length = 972
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 194/618 (31%), Positives = 303/618 (49%), Gaps = 116/618 (18%)
Query: 202 PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA-------G 254
PD L GLT V+SG L+ R++ E +K +G +VTGS+S KT+YL+ + + G
Sbjct: 274 PDLLKGLTIVLSGLLNVCSRDKLEQFLKNNGAKVTGSISGKTSYLIVADKLEDGRKGEEG 333
Query: 255 AKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKS 314
K +A + GT + E L D + ++K+ + + P + +K
Sbjct: 334 NKFKEATKKGTKIVRESELNDWL-----------------IDKIGVGMEEIFPDSNLSK- 375
Query: 315 TSAPKAPIERMKTVASPAKRKGQNIQ-QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLA 373
K S + + +N+ +L+ +KY PK +++V N+ V QL+ W+
Sbjct: 376 ---------LYKKSGSKKQDQPENVNLDKNLSLADKYMPKLLSDLVDNKSSVTQLNDWIY 426
Query: 374 HWN-------------EKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM 420
+ ++F+ R N S KA I+SG PG+GKT+ +LV +
Sbjct: 427 KFQHPNSAEEQNQKQKKRFIPLKMGRFQPVGNITS--KACIISGPPGIGKTSMVRLVAEA 484
Query: 421 LGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDE 480
LG + I NASD R K GS + + +LV N L N+ R + +++MDE
Sbjct: 485 LGLKLIVNNASDKRNK----------GSLRSVLNDLVDNSVL-MNLFRP-NKDFIIVMDE 532
Query: 481 VDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK 540
VDGM+ DRGGI+ LI IK +++PI+CICND +QKLKSL+ +C ++F+KP + +AK
Sbjct: 533 VDGMTGSDRGGISALIECIKSTRVPIVCICNDIDNQKLKSLLAHCYSIKFQKPDAKSVAK 592
Query: 541 RLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAK 600
RL I E + +N LE+LA + DIR +IN L+ Q+L S AK
Sbjct: 593 RLKYICEQENINMNLEDLEKLAICFDCDIRQSINMLEL--------------QKLQSKAK 638
Query: 601 DEDISPFTAVDKLFGFNGG-------------KLRMDERIDLSMSDPDLVPLLIQENYIN 647
+ F DK+ FN ++ + + +D+ D DL+PL+IQ++YI
Sbjct: 639 MFQPNAFKK-DKVCVFNTFNAALSLLNRNQRRQMSLRDMLDMFFLDYDLIPLIIQDSYIL 697
Query: 648 YRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHG 707
S +A+AAE I++GDI + +IRR+QQW L S S + P+ ++
Sbjct: 698 SHHSDINN--------VAKAAELIAEGDIISKKIRRDQQWSLMPSFGFLSSVYPSCIVGE 749
Query: 708 QRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDT--LRL--DY 763
Q + F +F WLGKNST K R H + +R + + T +RL Y
Sbjct: 750 QMD--------FPKFPQWLGKNSTASKIRR-----EGHQIKNRIAPITYLTSDIRLYSHY 796
Query: 764 FSLLLKQLTEPLRVLPKD 781
L+KQ E L+++ D
Sbjct: 797 LFQLIKQFLE-LKIVRND 813
>gi|312074341|ref|XP_003139927.1| ATPase [Loa loa]
gi|307764906|gb|EFO24140.1| ATPase [Loa loa]
Length = 885
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 208/698 (29%), Positives = 319/698 (45%), Gaps = 89/698 (12%)
Query: 98 DDDDDFVPPSVKKNSVGATPSKKLKSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGR- 156
+D D+FVP K TP K R A K D + + K SP K S +
Sbjct: 98 EDMDEFVPAPPTKKKRCRTPPGHEKLNFNRIDAIKKKDSLKKQSGNATKKTSPPKKSVQV 157
Query: 157 ---GRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVIS 213
+ R S A +GGG +N GE +C V +
Sbjct: 158 TISPQTSRRKSKQEAALESKGGGETVALN-GE-----------------NCKSSQAPVQA 199
Query: 214 GTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAK----ELGTPFLT 269
+ + + +K SV+ K + + +++ + TK + E F
Sbjct: 200 IKMKKTPKTASSASVK--------SVTAKKDVTILEQEEDQMQGTKKRKEEHETRKKFEI 251
Query: 270 EDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVA 329
+ D + S K E K S ++A K + +E K++ ++ + +
Sbjct: 252 RNETTDKTKTSGIAK-----EKKVSRSRMAEQKLSKMKKTVELKTSE-----LDELAEIE 301
Query: 330 SPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGN---QQLVKQLHTWLAHWNEKFLDTGTKR 386
SPA+ ++ L W +KY+P +VG + + +L WL +W L G K+
Sbjct: 302 SPAQ------TEAYLPWVDKYKPTNVKHLVGQNGEKSPMNKLLGWLRNWANNHLGVGGKQ 355
Query: 387 NGKK------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA--D 438
+ Q+D + KA +LSG PG+GKTT A + C+ L + +E NASD R K +
Sbjct: 356 KKARPPPWLAQSDGTTFKAVMLSGPPGVGKTTCAVMACKELKLRYVEKNASDVRNKKALE 415
Query: 439 AKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIA 497
A+ S+ IG + N +++ ++ S VLIMDEVDGMS DR GIA+LI
Sbjct: 416 AQTSEVIGCEQIDD----YFNGSVAHKINTSNEITHVLIMDEVDGMSGNDDRAGIAELIQ 471
Query: 498 SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIA 557
IK + IPIICICNDR SQK++SLVNYC D+RF++PR ++I RL+ IA E L+V++
Sbjct: 472 MIKQTLIPIICICNDRQSQKMRSLVNYCFDVRFQRPRVEQIRARLLTIACQEHLKVDKEE 531
Query: 558 LEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFN 617
++E+ + D+R +I LQ +S S + + +KD ++PF A +L +
Sbjct: 532 MDEIIEAAQHDVRQSIYNLQLLSSSGNGKEV---------QSKDAAVNPFEAARRLLNTD 582
Query: 618 GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIF 677
+ E+ + DP ++PL +QENY S ++RLS + +AA SIS+GDI
Sbjct: 583 ---TKTWEKQQMFFVDPSIMPLFVQENYPFVHNSKMS--TIERLSALRKAANSISEGDII 637
Query: 678 NVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLR 737
+ IR W L + S + P M+G + F WLGKNST K R
Sbjct: 638 DRIIRTTGAWTLLNEQAFFSSVAPTFCMNGYM-------KGMINFPSWLGKNSTFNKRQR 690
Query: 738 LLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
LL L H ++ + LDY +L + PL
Sbjct: 691 LLRQLTTHTYL--RTFAAVYPMVLDYVPVLRQNYCRPL 726
>gi|323456558|gb|EGB12425.1| hypothetical protein AURANDRAFT_20224 [Aureococcus anophagefferens]
Length = 690
Score = 245 bits (626), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 162/453 (35%), Positives = 237/453 (52%), Gaps = 50/453 (11%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNG---KKQNDASAEKAAIL 402
W ++++PK+ +I+GN + K+L WL W + L KR K+N + KAA+L
Sbjct: 123 WADRHKPKSQKDILGNGDVCKKLGLWLDDWEKVHLGDEKKRKKPAFAKENPGA--KAALL 180
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG--KADAKISKGIGGSNANSIKELVSNE 460
SG PG+GK++ A L+C GF +E+NASD+R + + +G +S S
Sbjct: 181 SGPPGIGKSSMAALLCAARGFDVVELNASDTRSARTVEETLGDALGCQVVSS-----SFA 235
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
A K + V+IMDE+DG+S DRGG L+ IK S PIICICNDR S K+K+
Sbjct: 236 KKGAAPPSKKRLRRVVIMDEIDGLSGSDRGGSQALVKLIKSSSTPIICICNDRQSAKVKT 295
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
L N+C DLRF++P K IAKR+M IA EGL + + A E L + DIR +N LQ +
Sbjct: 296 LANHCFDLRFKRPMKVTIAKRVMAIAMKEGLTIEQNAAELLVESCGNDIRQCLNALQMWA 355
Query: 581 LS---LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMD--------ERIDL 629
S Y ++ RL + +KD A+ ++ F+G K+ + +R D
Sbjct: 356 TSEGEAETCSYTAMKDRLSTISKD-------AIQRVTPFDGAKIILSDVRRKSHFDRCDA 408
Query: 630 SMSDPDLVPLLIQENYINYRPSSAGRDEV-------KRLSLIARAAESISDGDIFNVQIR 682
+D LVPLL+Q NY+ +SA RD ++L+ + AA +SD D+ + ++
Sbjct: 409 FFTDYSLVPLLVQHNYVT--AASAARDAQGKPCSVDEKLNRLEAAAACLSDVDLIDRRVH 466
Query: 683 RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDL 742
+Q+W L + AS + A + L G +F W GKNST K+ R +L
Sbjct: 467 ADQEWGLLTTE--ASLTVRAGV-------LVDGSCMAPQFSAWFGKNSTTKKSKRQCGEL 517
Query: 743 HFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
HL SR S RD +R DY +L K +T PL
Sbjct: 518 AL-HLGSRISGT-RDAVRRDYLPMLAKYVTRPL 548
>gi|145483437|ref|XP_001427741.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124394824|emb|CAK60343.1| unnamed protein product [Paramecium tetraurelia]
Length = 807
Score = 242 bits (618), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 188/613 (30%), Positives = 309/613 (50%), Gaps = 90/613 (14%)
Query: 194 EKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA 253
+++V + PD L GLT V+SG L+ R++ E +K +G +VTGSVS KTNYL+ + +
Sbjct: 96 KQDVFKNDPDLLNGLTIVLSGILNVCSRDKFEQFLKNNGAKVTGSVSGKTNYLIVGDKLE 155
Query: 254 -------GAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKS 306
G K +A + GT + E+ L + + V+K+ + +
Sbjct: 156 DGRKGEEGNKFKEATKKGTKIIRENELNNWL-----------------VDKIGVGIDEIF 198
Query: 307 PQNIEAKSTSAPKAPIE-RMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLV 365
P + +K + + + +TV S R + + +KY P + +E+V N+ +
Sbjct: 199 PDSSLSKLLKKSGSKKQDQQETVQSDQNR--------NFSLADKYMPMSLSELVDNKSSI 250
Query: 366 KQLHTWLAHWNE----------KFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAK 415
QL+ W+ + +NG+ N + ++SG PG+GKT+ +
Sbjct: 251 TQLNDWIYKFQHPNSEGDQNQKIKKKIYPIKNGQILNLLEI-LSCLISGPPGIGKTSMVR 309
Query: 416 LVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTV 475
LV + LG + I NASD R K GS + + +L+ N L N+ R + +
Sbjct: 310 LVAEALGLKLIVNNASDKRNK----------GSLRSVLNDLIDNSVL-MNLFRP-NKDFL 357
Query: 476 LIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRK 535
++MDEVDGM+ DRGGI+ LI IK +++PI+CICND + KLKSL+++C ++F+KP
Sbjct: 358 IVMDEVDGMTGSDRGGISALIECIKSTRVPIVCICNDIDNPKLKSLLSHCYSIKFQKPEA 417
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAIN--QLQYMSLSLSVIKYDDIRQ 593
+ +AKRL I E + ++ LE+LA + DIR +IN +LQ + ++ + D ++
Sbjct: 418 KSVAKRLKYICEQENINMSFEDLEKLAICFDCDIRQSINMLELQKFQSNTNLFQPDGFKK 477
Query: 594 RLLSSAKDEDISPFTAVDKLFGFNGG-KLRMDERIDLSMSDPDLVPLLIQENYINYRPSS 652
+ + F A L N ++ + + +D+ D DL+PL+IQ+NYI S
Sbjct: 478 DKVCV-----FNTFNAAVSLLNRNQRIQMSLRDMLDMFFLDYDLIPLIIQDNYI----LS 528
Query: 653 AGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETL 712
+D ++ +A+AAE I++GDI + +IR+ QQW L S S + P+ ++ Q +
Sbjct: 529 NHQD----INNVAKAAELIAEGDIISKKIRKEQQWSLMPSFGFLSSVYPSTIVGEQMD-- 582
Query: 713 EQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDT----LRLDYFSLLL 768
F +F WLGKNST K R H + +R + + T L Y L+
Sbjct: 583 ------FPKFPSWLGKNSTANKIKR-----ERHQIKNRLAPITYLTSDIKLYSKYLFQLI 631
Query: 769 KQLTEPLRVLPKD 781
KQL E L+VL D
Sbjct: 632 KQLLE-LKVLRND 643
>gi|449329092|gb|AGE95366.1| DNA replication factor c subunit [Encephalitozoon cuniculi]
Length = 568
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 184/547 (33%), Positives = 269/547 (49%), Gaps = 105/547 (19%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELG 264
L G FV +G + + R++A+ + GGR T S KT +L+ ++ +K KAKELG
Sbjct: 8 LKGKVFVFTGDM-KISRDDAKTKVMVLGGRCTAVPSSKTTFLVAGDNPGPSKMQKAKELG 66
Query: 265 TPFLTEDGLFDMIRASKPMKAL-AQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIE 323
L E+ +I+ + KAL AE +K EK A+
Sbjct: 67 IKVLDEEEFDSLIKDTS--KALDGTAEVEKKTEKAAS----------------------- 101
Query: 324 RMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTG 383
+ + SS W+EKYRP +EIVGNQ +VKQL E +L
Sbjct: 102 -----------RDECGSASSGVWSEKYRPSKRDEIVGNQGIVKQL--------EDYLQGR 142
Query: 384 TKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISK 443
TK KA +LSG PG+GKTT A +VC+ LG IE NASD R K +
Sbjct: 143 TKY-----------KAVLLSGQPGIGKTTTAHVVCKSLGLNVIEFNASDVRSKLEI---- 187
Query: 444 GIGGSNANSIKELVSNEA-LSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKIS 502
+N +K VS+++ L +SK VLIMDEVDGMS+ DRGGI +LI+ +K +
Sbjct: 188 ------SNKVKAFVSSQSILRPGSSKSK----VLIMDEVDGMSS-DRGGIPELISIVKET 236
Query: 503 KIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELA 562
+PIICICNDR + K+++L +YC DLRFRKP ++I R+ QI + EG ++ + L E+
Sbjct: 237 VVPIICICNDRNNPKIRTLSSYCLDLRFRKPDARQIFSRVKQILDMEGKKIPDGLLNEII 296
Query: 563 DRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLR 622
R GDIR I+ +Q ++L ++ L+ E++ V +F G +
Sbjct: 297 SRGAGDIRYTISMVQSIAL-----------RKALNLKVAENLVRKNVVKNVFDVAGEVFQ 345
Query: 623 ---MDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNV 679
+ E+IDL D L+PL + EN + SA RD ++ +SIS GD+
Sbjct: 346 RRSISEKIDLYFEDYSLIPLFVSENILKTSFRSA-RD-------LSECFDSISLGDVVEK 397
Query: 680 QIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRL 738
IR +Q W L+ ++ S ++P H ++ F WLG+NS K R+
Sbjct: 398 LIRGVSQDWSLAPLHAVYSVVVPTKGRHLMKKL---------EFPSWLGQNSKHSKAERI 448
Query: 739 LEDLHFH 745
L + H
Sbjct: 449 LHTVSMH 455
>gi|19173693|ref|NP_597496.1| DNA REPLICATION FACTOR C SUBUNIT [Encephalitozoon cuniculi GB-M1]
gi|19170899|emb|CAD26673.1| DNA REPLICATION FACTOR C SUBUNIT [Encephalitozoon cuniculi GB-M1]
Length = 568
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 184/547 (33%), Positives = 269/547 (49%), Gaps = 105/547 (19%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELG 264
L G FV +G + + R++A+ + GGR T S KT +L+ ++ +K KAKELG
Sbjct: 8 LKGKVFVFTGDM-KISRDDAKTKVMVLGGRCTAVPSSKTTFLVAGDNPGPSKMQKAKELG 66
Query: 265 TPFLTEDGLFDMIRASKPMKAL-AQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIE 323
L E+ +I+ + KAL AE +K EK A+
Sbjct: 67 IKVLDEEEFDSLIKDTS--KALDGTAEVEKKTEKAAS----------------------- 101
Query: 324 RMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTG 383
+ + SS W+EKYRP +EIVGNQ +VKQL E +L
Sbjct: 102 -----------RDECGSASSGVWSEKYRPSKRDEIVGNQGIVKQL--------EDYLQGR 142
Query: 384 TKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISK 443
TK KA +LSG PG+GKTT A +VC+ LG IE NASD R K +
Sbjct: 143 TKY-----------KAVLLSGQPGIGKTTTAHVVCKSLGLNVIEFNASDVRSKLEI---- 187
Query: 444 GIGGSNANSIKELVSNEA-LSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKIS 502
+N +K VS+++ L +SK VLIMDEVDGMS+ DRGGI +LI+ +K +
Sbjct: 188 ------SNKVKAFVSSQSILRPGSSKSK----VLIMDEVDGMSS-DRGGIPELISIVKET 236
Query: 503 KIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELA 562
+PIICICNDR + K+++L +YC DLRFRKP ++I R+ QI + EG ++ + L E+
Sbjct: 237 VVPIICICNDRNNPKIRTLSSYCLDLRFRKPDARQILSRVKQILDMEGKKIPDGLLNEII 296
Query: 563 DRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLR 622
R GDIR I+ +Q ++L ++ L+ E++ V +F G +
Sbjct: 297 SRGAGDIRYTISMVQSIAL-----------RKALNLKVAENLVRKNVVKNVFDVAGEVFQ 345
Query: 623 ---MDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNV 679
+ E+IDL D L+PL + EN + SA RD ++ +SIS GD+
Sbjct: 346 RRSISEKIDLYFEDYSLIPLFVSENILKTSFRSA-RD-------LSECFDSISLGDVVEK 397
Query: 680 QIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRL 738
IR +Q W L+ ++ S ++P H ++ F WLG+NS K R+
Sbjct: 398 LIRGVSQDWSLAPLHAVYSVVVPTKGRHLMKKL---------EFPSWLGQNSKHSKAERI 448
Query: 739 LEDLHFH 745
L + H
Sbjct: 449 LHTVSMH 455
>gi|67467166|ref|XP_649703.1| Activator 1 140 kDa subunit [Entamoeba histolytica HM-1:IMSS]
gi|56466194|gb|EAL44317.1| Activator 1 140 kDa subunit, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 718
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 151/521 (28%), Positives = 254/521 (48%), Gaps = 94/521 (18%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLG-----GLTFVISGTLDSLEREEAEDLIKRHGGR 234
F F +KG K +P G + G FV++G D L+R+E ++ I GG
Sbjct: 103 FNAFSHDTTAKNKGSKIIPRGVGNFFGENEFQKKNFVLTGVYDELDRDEMKEYIISFGGN 162
Query: 235 VTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKS 294
V S+S KT L+ E+ +K KAKE G P +ED +F+ ++ K
Sbjct: 163 VATSISGKTAVLIAGEEAGPSKIEKAKEKGIPIWSEDDVFNYVK------------QKLG 210
Query: 295 VEKVAASLP------KKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTE 348
+ S+P K+ P N++ +T I + + WTE
Sbjct: 211 NNVITTSIPNQTNNQKQQPTNVDENTTV----------------------INSNEIIWTE 248
Query: 349 KYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGM 408
KYRP+T ++++GN+ + + +TW+ W + D +A +L+G+PG+
Sbjct: 249 KYRPQTKSDLIGNKNQIAKFYTWINKWEKVIPD---------------RRAVLLAGAPGV 293
Query: 409 GKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDR 468
GKTT +K+V + LGF IE NASD+R K+ +++ IK + N +S +D
Sbjct: 294 GKTTVSKIVGKTLGFNPIEFNASDTRNKSSIELA----------IKRIFLNGQIS--IDG 341
Query: 469 SKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDL 528
SK+ K ++IMDEVDGMS+GDRGGI +L+ IK ++ PI+CICND +K++ L+N C +
Sbjct: 342 SKNKKPLIIMDEVDGMSSGDRGGITELVKYIKETEQPIVCICNDIMDKKMQPLINVCETI 401
Query: 529 RFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKY 588
F K E+ +RL I + EG+ V++ L ++A + +GD+R IN LQ
Sbjct: 402 NFSKISVSELTERLKYICDKEGVHVSDENLNQIASKAHGDVRYGINMLQSF--------- 452
Query: 589 DDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINY 648
++ + K+ED+ V L E+ ++ D ++P+ + ++ +
Sbjct: 453 --VKCGVTLGEKNEDVDYVEIVPTLIT-RYSSTSFIEKNEIFFMDNFMMPIYLHDSLL-- 507
Query: 649 RPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
++ S ++++ S + GDIF + + Q W+L
Sbjct: 508 --------RAQKFSALSKSFGSFAIGDIFQNVVNKTQNWKL 540
>gi|449705511|gb|EMD45540.1| replication factor C large subunit, putative [Entamoeba histolytica
KU27]
Length = 718
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 151/521 (28%), Positives = 254/521 (48%), Gaps = 94/521 (18%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLG-----GLTFVISGTLDSLEREEAEDLIKRHGGR 234
F F +KG K +P G + G FV++G D L+R+E ++ I GG
Sbjct: 103 FNAFSHDTTAKNKGSKIIPRGVGNFFGENEFQKKNFVLTGVYDELDRDEMKEYIISFGGN 162
Query: 235 VTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKS 294
V S+S KT L+ E+ +K KAKE G P +ED +F+ ++ K
Sbjct: 163 VATSISGKTAVLIAGEEAGPSKIEKAKEKGIPIWSEDDVFNYVK------------QKLG 210
Query: 295 VEKVAASLP------KKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTE 348
+ S+P K+ P N++ +T I + + WTE
Sbjct: 211 NNVITTSIPNQTNNQKQQPTNVDESTTV----------------------INSNEIIWTE 248
Query: 349 KYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGM 408
KYRP+T ++++GN+ + + +TW+ W + D +A +L+G+PG+
Sbjct: 249 KYRPQTKSDLIGNKNQIAKFYTWINKWEKVIPD---------------RRAVLLAGAPGV 293
Query: 409 GKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDR 468
GKTT +K+V + LGF IE NASD+R K+ +++ IK + N +S +D
Sbjct: 294 GKTTVSKIVGKTLGFNPIEFNASDTRNKSSIELA----------IKRIFLNGQIS--IDG 341
Query: 469 SKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDL 528
SK+ K ++IMDEVDGMS+GDRGGI +L+ IK ++ PI+CICND +K++ L+N C +
Sbjct: 342 SKNKKPLIIMDEVDGMSSGDRGGITELVKYIKETEQPIVCICNDIMDKKMQPLINVCETI 401
Query: 529 RFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKY 588
F K E+ +RL I + EG+ V++ L ++A + +GD+R IN LQ
Sbjct: 402 NFSKISVSELTERLKYICDKEGVHVSDENLNQIASKAHGDVRYGINMLQSF--------- 452
Query: 589 DDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINY 648
++ + K+ED+ V L E+ ++ D ++P+ + ++ +
Sbjct: 453 --VKCGVTLGEKNEDVDYVEIVPTLIT-RYSSTSFIEKNEIFFMDNFMMPIYLHDSLL-- 507
Query: 649 RPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
++ S ++++ S + GDIF + + Q W+L
Sbjct: 508 --------RAQKFSALSKSFGSFAIGDIFQNVVNKTQNWKL 540
>gi|258565361|ref|XP_002583425.1| hypothetical protein UREG_06392 [Uncinocarpus reesii 1704]
gi|237907126|gb|EEP81527.1| hypothetical protein UREG_06392 [Uncinocarpus reesii 1704]
Length = 729
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 191/602 (31%), Positives = 294/602 (48%), Gaps = 81/602 (13%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
E+P A +CL L+FV +G LD+L REE + L+KR+GG+VT + S KT+Y++ D
Sbjct: 17 EIPVRAENCLAELSFVFTGVLDALGREEGQALVKRYGGKVTTAPSSKTSYVVLGGDAGPK 76
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASKPM----KALAQAESKKSVEK-----VAASLPKKS 306
K ++ G + E GLF++IR KA Q E+KK E+ +AA + ++
Sbjct: 77 KLETIRKHGLKTIDEHGLFELIRKMPANGGDGKAAVQYEAKKKAEQEKIKEMAAEMDREE 136
Query: 307 PQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVK 366
+ + A S K + + T + WT KY P + N I GN+ +V+
Sbjct: 137 KKRLVAASA---KPTTKSVPTSGNQTPAAANKPAVDDRLWTVKYAPTSLNMICGNKTVVE 193
Query: 367 QLHTWLAHWNEKFLDTGTKRNGKK--QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424
+L +WL +W + K + KK ++ + +A ++ G PG+GKTTAA LV ++ +
Sbjct: 194 KLQSWLRNWR-----SNAKADFKKPGKDGSGIYRAVMIHGPPGIGKTTAAHLVAKLENYD 248
Query: 425 AIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG 483
+E NASD+R K + +G+ G + S++ S E +D K VLIMDEVDG
Sbjct: 249 VVETNASDTRSKK--LLDEGLRGILDTTSLQGYFSGEG--KKVDGGKK-NLVLIMDEVDG 303
Query: 484 MSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLM 543
MSAGDRGG+ L A K ++IPII ICN+R K++ + +L FR+P ++ RL
Sbjct: 304 MSAGDRGGVGALAAVAKKTRIPIIMICNERRLPKMRPFDHVTYELPFRRPTADQMRSRLS 363
Query: 544 QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDED 603
I EGL++ L+ L + + L + +D +Q +S A ++
Sbjct: 364 TICFREGLKIPPQVLDGLIE---------------VKLDSQNLDFDKGKQ--MSKAWEKH 406
Query: 604 ISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSA----GRD-EV 658
++ T + DL L++QENY+ P A GR+ ++
Sbjct: 407 VNLET--------------------MGYCWQDLDYLMLQENYLKTNPVRASAYNGRERKL 446
Query: 659 KRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGER 717
K L L AA SISDGD+ + I QQW L + ++ S + PA+ M G
Sbjct: 447 KLLELADDAATSISDGDLVDRMIHGSQQQWSLMPTHAIFSFVRPASCMSGNM-------- 498
Query: 718 NFNR--FGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
+R F WLG NS GK R ++++ H+ R S R +R Y L +QL L
Sbjct: 499 -IDRPGFTSWLGNNSKQGKMTRQIKEIQ-GHMRLRASG-DRHEIRQQYLPALWEQLIHRL 555
Query: 776 RV 777
V
Sbjct: 556 EV 557
>gi|401826523|ref|XP_003887355.1| putative DNA replication factor C complex large subunit
[Encephalitozoon hellem ATCC 50504]
gi|392998514|gb|AFM98374.1| putative DNA replication factor C complex large subunit
[Encephalitozoon hellem ATCC 50504]
Length = 569
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 189/584 (32%), Positives = 278/584 (47%), Gaps = 106/584 (18%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELG 264
L G FV +G + S+ R+ A + GGR T S KT +L+ E +K KAKELG
Sbjct: 8 LKGKVFVFTGDM-SVSRDNARTKVVVLGGRCTTVPSSKTTFLVVGESPGISKMQKAKELG 66
Query: 265 TPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIER 324
L E+ +IR ++ K L A
Sbjct: 67 IRILNEEEFMQLIRENE--KGLGDA----------------------------------- 89
Query: 325 MKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGT 384
+K P K N S W+EKYRP +EIVGN + KQL E +L T
Sbjct: 90 IKVDVGPGNTKNDNETALSNIWSEKYRPSKKDEIVGNIGISKQL--------EDYLQGRT 141
Query: 385 KRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG 444
K KAA+LSG PG+GKTT A +VC+ LGF +E NASD R K++
Sbjct: 142 KY-----------KAALLSGQPGIGKTTMAHVVCKYLGFDIVEFNASDVRSKSEI----- 185
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI 504
A+ I+ V+++++ + R K VLIMDEVDGMS+ DRGGI +L+ IK + I
Sbjct: 186 -----ASKIRSFVNSQSVCLGVSRKK----VLIMDEVDGMSS-DRGGIPELVNVIKETVI 235
Query: 505 PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR 564
PIICICNDR + K+++L N+C DLRFRKP +++ R+ I + EG ++++ L E+ +
Sbjct: 236 PIICICNDRNNLKIRTLSNHCLDLRFRKPDPRQMISRIKYILDREGKKISDGLLNEIISK 295
Query: 565 VNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLR-- 622
+GD+R +I +Q ++L +R L+ + E + +F G +
Sbjct: 296 SSGDMRYSIGMVQSIAL-----------KRALTPSVAESFVRKNVMKNVFDIAGEVFQRR 344
Query: 623 -MDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQI 681
+ E+IDL D L+PL + EN + P + RD ++ +SIS GDI +
Sbjct: 345 SITEKIDLYFEDYSLIPLFVNENILK-TPFKSARD-------LSECFDSISLGDIVEKLM 396
Query: 682 R-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLE 740
R NQ W L+ ++ S IP G+ T + F WLG+NS K R+L
Sbjct: 397 RGTNQDWSLAPLHAVYSVAIPT---EGRPLTKKM------MFPSWLGQNSKHLKAERILY 447
Query: 741 DLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDELL 784
H +S K + + +R L+LK+ L+ D+ L
Sbjct: 448 TASVH--SSCKIRANAEEIRKYALELILKKHAYHLKTHCIDKAL 489
>gi|407033664|gb|EKE36933.1| activator 1 140 kda subunit, putative [Entamoeba nuttalli P19]
Length = 718
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 151/521 (28%), Positives = 254/521 (48%), Gaps = 94/521 (18%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLG-----GLTFVISGTLDSLEREEAEDLIKRHGGR 234
F F +KG K +P G + G FV++G D L+R+E ++ I GG
Sbjct: 103 FNAFSHDTTAKNKGSKIIPRGVGNFFGENEFQKKNFVLTGVYDELDRDEMKEYIISFGGN 162
Query: 235 VTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKS 294
V S+S KT L+ E+ +K KAKE G P +ED +F+ ++ K
Sbjct: 163 VATSISGKTAVLIAGEEAGPSKIEKAKEKGIPIWSEDDVFNYVK------------QKLG 210
Query: 295 VEKVAASLP------KKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTE 348
+ S+P K+ P N++ +T I + + WTE
Sbjct: 211 NNVITTSIPNQTNNQKQQPTNVDENTTV----------------------INSNEIIWTE 248
Query: 349 KYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGM 408
KYRP+T ++++GN+ + + +TW+ W + D +A +L+G+PG+
Sbjct: 249 KYRPQTKSDLIGNKNQIAKFYTWINKWEKVIPD---------------RRAVLLAGAPGV 293
Query: 409 GKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDR 468
GKTT +K+V + LGF IE NASD+R K+ +++ IK + N +S +D
Sbjct: 294 GKTTVSKIVGKTLGFNPIEFNASDTRNKSSIELA----------IKRIFLNGQIS--IDG 341
Query: 469 SKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDL 528
SK+ K ++IMDEVDGMS+GDRGGI +L+ IK ++ PI+CICND +K++ L+N C +
Sbjct: 342 SKNKKPLIIMDEVDGMSSGDRGGITELVKYIKETEQPIVCICNDIMDKKMQPLINVCETI 401
Query: 529 RFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKY 588
F K E+ +RL I + EG+ V++ L ++A + +GD+R IN LQ
Sbjct: 402 NFSKISVIELTERLKYICDKEGVHVSDENLNQIASKAHGDVRYGINMLQSF--------- 452
Query: 589 DDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINY 648
++ + K+ED+ V L E+ ++ D ++P+ + ++ +
Sbjct: 453 --VKCGVTLGEKNEDVDYVEIVPTLIT-RYSSTSFIEKNEIFFMDNFMMPIYLHDSLL-- 507
Query: 649 RPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
++ S ++++ S + GDIF + + Q W+L
Sbjct: 508 --------RAQKFSALSKSFGSFAIGDIFQNVVNKTQNWKL 540
>gi|403222871|dbj|BAM41002.1| uncharacterized protein TOT_030000263 [Theileria orientalis strain
Shintoku]
Length = 1053
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 197/660 (29%), Positives = 318/660 (48%), Gaps = 105/660 (15%)
Query: 149 SPLKSSGRGRGGRGASGAPAVGRGR--GGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLG 206
SP KS+GRG S P + R GG G + K ++ V + + +
Sbjct: 359 SPTKSTGRGSDTSNQS-TPNRRKYRKVGGDAEGKKRKTQTKKKQSVNQENVDDS--NLVS 415
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI-------AGAKSTK 259
G FV +G L S++R+EA +KR GG V +VS +T+YL+ + + G K K
Sbjct: 416 GRKFVFTGEL-SMDRDEATYKVKRLGGIVVSAVSGQTDYLVYGDKLEDGRDYTTGTKYKK 474
Query: 260 AKE------LGTPFLTEDGLFDMIRASKPMKALAQAESKKS--VEKVAASLPKKSPQNIE 311
AKE L + E+ ++++ + ++ + ++ V++ L K +
Sbjct: 475 AKELNKNKGLNIQLINEEQFMNLLKDTPRIEEEDELVEEELTGVQQEEGRLDGKVEGGV- 533
Query: 312 AKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTW 371
G Q + + EKYRP E++GNQ+L+++L W
Sbjct: 534 ------------------------GTTKAQDQMLF-EKYRPSNLYELMGNQKLIERLKEW 568
Query: 372 LAHWNEKFLDTGTKRN-GKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
L +++ TG ++ G + + KAA+LSG PG+GKTT A+LV + G+ +E NA
Sbjct: 569 LQNYDY----TGEYKHLGSSKGKDDSFKAALLSGPPGIGKTTCARLVGESFGYYVMEFNA 624
Query: 431 SDSRGK-ADAKISKGIGGS------NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG 483
SD R K A KI+ + G+ NSI++L +T+L++DE+DG
Sbjct: 625 SDQRSKNAVEKITPLVTGTVTLNSFQNNSIRDL---------------KRTLLVLDEIDG 669
Query: 484 MSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLM 543
MS+GDRGGI +I I+I++ PII ICNDRYSQK+ +L N C DLRF P + KR+
Sbjct: 670 MSSGDRGGIQSIIKLIQIARCPIILICNDRYSQKISTLSNKCLDLRFGSPSIELFIKRVN 729
Query: 544 QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDED 603
QI E + E L +L + NGD+R +N LQ+ + + S D + KDE
Sbjct: 730 QICKLEKIPATENLLLDLYHKSNGDMRYTLNYLQFYATTKSKDGPDGTINK-----KDES 784
Query: 604 ISP--FTAVDKLFGFNGGKLR--MDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
S F +K+F + LR + + ++ +D +++ L++QENY+ Y +
Sbjct: 785 YSQNIFDNCNKVFNLSKMSLRDKLSKVNEIFFTDYNIMSLMLQENYVKYN---------R 835
Query: 660 RLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMH----GQRETLEQG 715
+ +I++ A GD+ N ++R Q + L S + +IPA M+ G E L
Sbjct: 836 NIGVISKIALDYVCGDMVNKVMQRTQTYSLLPDLSSLTAVIPALEMNKAGSGLTERLS-- 893
Query: 716 ERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F WLGK ST KN R+L ++ +L+ + + G + L Y L+ + + + L
Sbjct: 894 ------FPQWLGKQSTTTKNRRILSEISM-NLSYKTTLYGSNLLMDGYLELIYQNVMKHL 946
>gi|68486597|ref|XP_712849.1| hypothetical protein CaO19.14180 [Candida albicans SC5314]
gi|46434265|gb|EAK93680.1| hypothetical protein CaO19.14180 [Candida albicans SC5314]
Length = 688
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 172/578 (29%), Positives = 291/578 (50%), Gaps = 46/578 (7%)
Query: 216 LDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFD 275
+ +L+R AE K++G +VT S+S KT+ ++ D +K K K+ + E G
Sbjct: 1 MPNLDRGTAEQTAKQYGAKVTKSISGKTSLVVLGTDAGPSKVQKIKQHKIKAIDEAGFIK 60
Query: 276 MIRA--SKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASP-- 331
++ + + A +K E+ A + +++ + + + ER+K +P
Sbjct: 61 LLESMPADGGSGAAAEAAKLKREQEEAKIIEQAKEEERKEREAEKARVAERVKATVNPKG 120
Query: 332 ---AKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNG 388
+K + Q L WT+++ P N++ GN+ +++L +WL +W D +
Sbjct: 121 ETFGFQKKEVAPQDKL-WTDRHAPTDLNQLCGNKGQIQKLKSWLENW----FDNQARGFK 175
Query: 389 KKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS 448
+D + +A ++SG PG+GKT+AA LV + LGF IE NASD R K+
Sbjct: 176 GNASDPDSFRAVLISGPPGIGKTSAAHLVAKSLGFDIIERNASDVRSKSLL--------- 226
Query: 449 NANSIKELVSNEALSANMDR-------SKHPKTVLIMDEVDGMSAGDRGGIADLIASIKI 501
NAN +K +++N ++ S + + +IMDEVDGMS+GD GG L KI
Sbjct: 227 NAN-VKSILNNTSVVGYFKHRGDTEKNSNNKRFCIIMDEVDGMSSGDHGGAGALSQFCKI 285
Query: 502 SKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEEL 561
+ +P+I ICND+ K+++ DL FR+P + E+ RLM IA E ++++ + +L
Sbjct: 286 TSMPMILICNDKSLPKMRTFDRTTYDLPFRRPSENEVKSRLMTIAFREKVKLDPSVIGQL 345
Query: 562 ADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG---FNG 618
+ DIR IN L +S + I + +++ S K + PF +L ++
Sbjct: 346 VQATSNDIRQMINLLSTVSKTQKQIGANSMKEVKESWQKQVVLKPFDIAGRLLNSGIWSD 405
Query: 619 GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFN 678
+ ++++++L +D D PL+IQENY+ P G K++ L+A+AAE IS D N
Sbjct: 406 PRSSLNDKLNLYFNDFDFSPLMIQENYLITNPRLPG----KQIELVAKAAEDISISDTVN 461
Query: 679 VQIRR-NQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLR 737
IR QQW L + S + P+ + GQ G NF+ WLG+NS K R
Sbjct: 462 SLIRSGEQQWSLLPFHGIMSTVKPSYEIAGQIT----GRLNFS---SWLGQNSKQMKYQR 514
Query: 738 LLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
+L++L +H ++ + LRLDY L +++ +PL
Sbjct: 515 MLQELQYH--TRVRTSTTKQELRLDYLDALWQKIVKPL 550
>gi|68486652|ref|XP_712820.1| hypothetical protein CaO19.6891 [Candida albicans SC5314]
gi|46434235|gb|EAK93651.1| hypothetical protein CaO19.6891 [Candida albicans SC5314]
Length = 688
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 172/578 (29%), Positives = 291/578 (50%), Gaps = 46/578 (7%)
Query: 216 LDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFD 275
+ +L+R AE K++G +VT S+S KT+ ++ D +K K K+ + E G
Sbjct: 1 MPNLDRGTAEQTAKQYGAKVTKSISGKTSLVVLGADAGPSKVQKIKQHKIKAIDEAGFIK 60
Query: 276 MIRA--SKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASP-- 331
++ + + A +K E+ A + +++ + + + ER+K +P
Sbjct: 61 LLESMPADGGSGAAAEAAKLKREQEEAKIIEQAKEEERKEREAEKARVAERVKATVNPKG 120
Query: 332 ---AKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNG 388
+K + Q L WT+++ P N++ GN+ +++L +WL +W D +
Sbjct: 121 ETFGFQKKEVAPQDKL-WTDRHAPTDLNQLCGNKGQIQKLKSWLENW----FDNQARGFK 175
Query: 389 KKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS 448
+D + +A ++SG PG+GKT+AA LV + LGF IE NASD R K+
Sbjct: 176 GNASDPDSFRAVLISGPPGIGKTSAAHLVAKSLGFDIIERNASDVRSKSLL--------- 226
Query: 449 NANSIKELVSNEALSANMDR-------SKHPKTVLIMDEVDGMSAGDRGGIADLIASIKI 501
NAN +K +++N ++ S + + +IMDEVDGMS+GD GG L KI
Sbjct: 227 NAN-VKSILNNTSVVGYFKHRGDTEKNSNNKRFCIIMDEVDGMSSGDHGGAGALSQFCKI 285
Query: 502 SKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEEL 561
+ +P+I ICND+ K+++ DL FR+P + E+ RLM IA E ++++ + +L
Sbjct: 286 TSMPMILICNDKSLPKMRTFDRTTYDLPFRRPSENEVKSRLMTIAFREKVKLDPSVIGQL 345
Query: 562 ADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG---FNG 618
+ DIR IN L +S + I + +++ S K + PF +L ++
Sbjct: 346 VQATSNDIRQMINLLSTVSKTQKQIGANSMKEVKESWQKQVVLKPFDIAGRLLNSGIWSD 405
Query: 619 GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFN 678
+ ++++++L +D D PL+IQENY+ P G K++ L+A+AAE IS D N
Sbjct: 406 PRSSLNDKLNLYFNDFDFSPLMIQENYLITNPRLPG----KQIELVAKAAEDISISDTVN 461
Query: 679 VQIRR-NQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLR 737
IR QQW L + S + P+ + GQ G NF+ WLG+NS K R
Sbjct: 462 SLIRSGEQQWSLLPFHGIMSTVKPSYEIAGQIT----GRLNFS---SWLGQNSKQMKYQR 514
Query: 738 LLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
+L++L +H ++ + LRLDY L +++ +PL
Sbjct: 515 MLQELQYH--TRVRTSTTKQELRLDYLDALWQKIVKPL 550
>gi|399218437|emb|CCF75324.1| unnamed protein product [Babesia microti strain RI]
Length = 874
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 178/565 (31%), Positives = 279/565 (49%), Gaps = 61/565 (10%)
Query: 210 FVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLT 269
FV +G L +++R++A + +KR GG V +VS++ +YL+ E + + K +GT +
Sbjct: 219 FVFTGVLSTIDRDDAINAVKRLGGSVVSAVSEQIDYLVFGEVLEDGRPYK---MGTKY-K 274
Query: 270 EDGLFDMIR---------ASKPMKALAQAESKKSVEKVAASLPKK-----SPQ--NIEAK 313
+ + IR A +P++ + + K ++ S+P SP+ N+
Sbjct: 275 KLCYINKIRKQRLKFDNNAKQPIELIDEITFSKMID--GLSVPHNADTDTSPKIGNLTLS 332
Query: 314 STSAPKAPI------ERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQ 367
+ K I E+++ A+ Q++S W +KY P++ E V NQ +K+
Sbjct: 333 FDTTLKEDICTNVSGEKIENTANFGNNCLTMSQKNSSLWVDKYAPRSIEEFVSNQLQLKK 392
Query: 368 LHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
L WL W K L +G N K+ D S+ K A+LSG PG+GKTT+A+L+ G+ +E
Sbjct: 393 LMEWLKTW--KNLHSGNSDNKKR--DRSSFKCALLSGPPGVGKTTSARLIVASCGYSILE 448
Query: 428 VNASDSRGK-ADAKISKGIGGSNANSIKELVSNEALSANMDRSKH--PKTVLIMDEVDGM 484
NASD R K A +I+ +++ ++ N D + T ++MDEVDG+
Sbjct: 449 FNASDQRNKQAIEQIA-------------IMATGGITLNFDYTNKLCANTCIVMDEVDGI 495
Query: 485 SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544
S+GDRGG + I+ S PIICICNDR QK++SL N C DL+F P K + +RL +
Sbjct: 496 SSGDRGGSQAIHRLIENSICPIICICNDRNLQKIRSLANKCLDLKFSPPSKMLLVQRLKK 555
Query: 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS---LSVIKYDDIRQRLLSSAKD 601
I E + VN+ L L D GDIR IN LQ+ S S + + L KD
Sbjct: 556 ICQCENITVNDNTLNSLCDSRQGDIRQCINALQFSSNSKTPFMAKSTSALVEELKLGEKD 615
Query: 602 EDI--SPFTAVDKLFG-FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEV 658
++ SPF +LF N L +D D D+VPL+I ENYI + S
Sbjct: 616 NNLITSPFDITQRLFSPQNPNDLTFTYILDYFFIDYDMVPLMIHENYIKFIKDSLISG-- 673
Query: 659 KRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERN 718
K+ S + AAE+ GD+ + I QQ+ + + ++P ++ ++L G
Sbjct: 674 KKWSALCTAAEAFVIGDVIHKHIYNTQQFVMLPELGYITAVLPVVIL----KSLYSGRLT 729
Query: 719 FNR-FGGWLGKNSTMGKNLRLLEDL 742
F WLG+ S KN R+L++
Sbjct: 730 EKLDFPKWLGRVSANNKNKRMLQEF 754
>gi|156087871|ref|XP_001611342.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798596|gb|EDO07774.1| conserved hypothetical protein [Babesia bovis]
Length = 944
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 173/578 (29%), Positives = 279/578 (48%), Gaps = 92/578 (15%)
Query: 190 PHKGEKEV-PEGAPDC----LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTN 244
P K KEV P GA + + G+ FV +G LD+++R+ +L++ GG TGSVS KTN
Sbjct: 294 PVKSPKEVTPHGASNVNKEKVVGMRFVFTGVLDAIDRDSVVELVRSLGGLTTGSVSSKTN 353
Query: 245 YLLCDEDI-------AGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEK 297
YL+ E + G+K KA E T+D ++ S+ + +
Sbjct: 354 YLVYGEKLEDGRHYTTGSKYKKALEFNK---TKDAGIQLLNESEFLALIDY--------- 401
Query: 298 VAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNE 357
QN+ ++ T+ P E + T+A+ + +SL EKYRP +
Sbjct: 402 ----------QNVSSRLTAVKTIPDESVHTIAT-------STDNTSLPLCEKYRPIHLTD 444
Query: 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLV 417
++GN+ ++++ WL W+ S A+LSG PG+GKTT AK+V
Sbjct: 445 LIGNEANIRKVVDWLKSWSP----------------GSLPACALLSGPPGVGKTTTAKIV 488
Query: 418 CQMLGFQAIEVNASDSRGK-ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476
G++ +E NASD R K A KIS + G + S + + K+++
Sbjct: 489 AAECGYECVEFNASDLRNKSAVEKISMLVTGGQSFSF------------LGECRMKKSLV 536
Query: 477 IMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQ 536
++DE+DGM AGDRGG+ ++A + ++ PIICICNDR++QK+ +L D+RF P
Sbjct: 537 LLDEIDGMGAGDRGGLQAVVALLPKARCPIICICNDRHNQKMTTLGGKSLDVRFSSPTLM 596
Query: 537 EIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLL 596
+ R+ + AEG+ V + + +L ++ GD R A+N +++ SL S K L
Sbjct: 597 QFRARIASVCAAEGITVPQDTVAQLYEQGGGDFRHALNAIEFNSLGDSGSK-----GHAL 651
Query: 597 SSAKDEDI----SPFTAVDKLFGFNGGKL--RMDERIDLSMSDPDLVPLLIQENYINYRP 650
S + +DI + F A +LF G R E + D +++PL+ QENYI + P
Sbjct: 652 SGSDAKDIGHTKNLFEATGRLFSARSGSTEKRYRELEQIFFIDYNMMPLMAQENYIKFIP 711
Query: 651 SSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRE 710
+ + LS++ ++S + D ++R Q + L ++ S I+PA ++
Sbjct: 712 VNN-----RALSILQALSQSFVEADRVEEFLKRTQSFSLLPDLAILSSILPAMVI----S 762
Query: 711 TLEQGERNFNRFGGWLGKNSTMGKNLRLLEDL--HFHH 746
T R F +LG+ ST KN R L D+ H H
Sbjct: 763 TAGGSCRERLMFPQYLGRFSTTSKNKRFLSDIGKHMGH 800
>gi|299472502|emb|CBN77287.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 978
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 154/441 (34%), Positives = 238/441 (53%), Gaps = 26/441 (5%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKA 399
Q W +KY+P + + ++G+ VK+L WL +W L GK D +A
Sbjct: 440 QNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPTGK---DNPGARA 496
Query: 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSN 459
A+LSG PG+GK++ A LV + +G+ +E+NASD+R K +S+ + N + +N
Sbjct: 497 ALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRS--LSEELASVIGNKVLSFTAN 554
Query: 460 EALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLK 519
K +++MDEVDGM DRGGI +LI IK S++PII ICNDR QK++
Sbjct: 555 GG-GGGTTTGGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIR 613
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
SLVN+C DLRF +P+K IAKR+ +A EG++V++ A E L + DIR ++ LQ
Sbjct: 614 SLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQVLHALQMW 673
Query: 580 SLSLSVIKYDDIRQRLLSSAKDED--ISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLV 637
S S + Y +++ + + KD++ I PF A + G + + +R +L +D L+
Sbjct: 674 SRKSSKMTYMNLKGGISAIEKDKNQRIGPFDAARSILG-GASRTPLRDRYELFFTDYSLL 732
Query: 638 PLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRN-QQWQLSQSSSLA 696
PLL+ +NY++ S D R + A A+ ++SD DI + ++R + Q W+L
Sbjct: 733 PLLVHQNYLS---SLMQVDAKVRTEVTAAASAAVSDADIISGKMRGDVQHWEL------- 782
Query: 697 SCIIPA-ALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG 755
+PA A ++ + ++ G F F WLG S K RLL +L H AS G
Sbjct: 783 ---LPAQAALNVRVGSVGGGSLGFPEFPKWLGNYSRENKRRRLLGELSTHLNASVSG--G 837
Query: 756 RDTLRLDYFSLLLKQLTEPLR 776
+ +RL Y L + LT+PLR
Sbjct: 838 TEAVRLSYIHFLKRLLTQPLR 858
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 69/106 (65%), Gaps = 7/106 (6%)
Query: 184 GERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKT 243
G R PP++G+KEVP G CL G FV+SG LDSL RE AEDLIK++GG+VTG+VS +T
Sbjct: 236 GARLAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRT 295
Query: 244 NYLLCDEDI-------AGAKSTKAKELGTPFLTEDGLFDMIRASKP 282
++L+ + G+K +A + T + EDGLF M+R S P
Sbjct: 296 HFLVLGTVLDDGRPPEEGSKYKRAMVMKTRIIDEDGLFKMLRDSNP 341
>gi|123395219|ref|XP_001300705.1| differentiation specific element binding protein [Trichomonas
vaginalis G3]
gi|121881785|gb|EAX87775.1| differentiation specific element binding protein, putative
[Trichomonas vaginalis G3]
Length = 876
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 179/571 (31%), Positives = 276/571 (48%), Gaps = 103/571 (18%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
GF FG +PP+ G+ +P G CL G+TFV +GT+ S+ RE +D+I+++GGR+T S
Sbjct: 27 GF-RFGMSDNPPNLGQVPIPIGKSGCLEGITFVATGTMPSITRETLKDIIEKYGGRLTTS 85
Query: 239 VSKKTNYLL--CDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVE 296
+S KT+ ++ C E + +K +A+E G + E+ LF ++++ P
Sbjct: 86 ISGKTDVVIRGCIE-VGPSKLAQARERGLLIIDEESLFQYLQSTNPNYVPPPP------- 137
Query: 297 KVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPN 356
K + P P E M ++S TEKYRP+ +
Sbjct: 138 ---------------PKISGGPALP-ESMFPISS--------------ILTEKYRPRQLS 167
Query: 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKL 416
+IV N +K L + ++ K AIL G PG+GK+TAA L
Sbjct: 168 DIVSNYGALKHLVDFFEAYDP----------------YEKPKCAILCGPPGIGKSTAATL 211
Query: 417 VCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476
V + IE+NASD+R K S + ++ N+A+ A +S + L
Sbjct: 212 VALYCDYHPIELNASDTRSKK----------SLNETFPDIFDNKAIDA---KSGQDQICL 258
Query: 477 IMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQ 536
I DEVDGMSAGDRGG+ +L + + P+ICICNDR ++KL++L D++F P +Q
Sbjct: 259 IFDEVDGMSAGDRGGLQELTKFVDRAINPVICICNDRENRKLETLAKRSVDIKFATPTEQ 318
Query: 537 EIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLL 596
E+A RL I EG++V++ +L +A NGD R AIN LQ+ + S ++ D++ +
Sbjct: 319 EVASRLRFICEQEGMKVSDESLLRIAQSSNGDFRHAINTLQFWVPTESDLETDNVNR--- 375
Query: 597 SSAKDEDISPFT----AVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENY-INYRPS 651
SAK + P A KLF K + R D D +VPL + EN IN
Sbjct: 376 -SAK---VIPIVDVVEATTKLF---RPKTDFEIRFDCYFVDYGMVPLYMHENLPIN---D 425
Query: 652 SAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRET 711
+AG A A ES++ GD+ N I +N ++Q + S + P+ L G+
Sbjct: 426 NAG---------YADALESMAIGDVLNNDIYQNMEFQTLPAHGFFSAVAPSILSPGK--- 473
Query: 712 LEQGERNFNRFGGWLGKNSTMGKNLRLLEDL 742
+ G +F + GKNS K R + ++
Sbjct: 474 -DWG--GMAKFPMYFGKNSRHKKLERYINEM 501
>gi|320586272|gb|EFW98951.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 1507
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 162/463 (34%), Positives = 237/463 (51%), Gaps = 40/463 (8%)
Query: 326 KTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHW-NEKFLDTGT 384
++ A+PA+ QQ WT KY P N+I GN+ V+++ +WL +W K D T
Sbjct: 903 RSQAAPARVPTPTAQQ---LWTTKYAPTQLNQICGNKAQVERIASWLKNWPKAKKYDFMT 959
Query: 385 KRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG 444
K + A +A I+SG PG+GKTTAA L + IE NASD+R K + G
Sbjct: 960 K----GADGLGASRAIIISGPPGIGKTTAAHLAANLADHDVIETNASDTRSKK--LVESG 1013
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI 504
IG + N+ L+ A + VLIMDEVDGMSAGDRGGI L K +++
Sbjct: 1014 IGDTMDNT--SLLGFFAPDGKKVDTTKKNVVLIMDEVDGMSAGDRGGIGALAKFCKKTEV 1071
Query: 505 PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR 564
P+I ICN+R K++ + DLRF +P +I R+M I + EGL++ ++ L +
Sbjct: 1072 PLILICNERRLPKMRPFDHVAFDLRFNRPTVDQIRSRVMTICHREGLKLPPTVVDALIEG 1131
Query: 565 VNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGG----- 619
N DIR IN L L S + YD + + K + P+ K+ G GG
Sbjct: 1132 TNKDIRQIINMLSTAKLDQSTMTYDQGKAMTKAWEKHVVLKPWDICQKMLG--GGLFAPA 1189
Query: 620 -KLRMDERIDLSMSDPDLVPLLIQENYINYRP----SSAG----RDE-VKRLSLIARAAE 669
K ++++I+L +D + L+IQENY+N +P SS G R+E +K L L+ AA+
Sbjct: 1190 SKATLNDKIELYFNDHEFSYLMIQENYLNTKPMALSSSRGNYTKREERLKYLELVDNAAQ 1249
Query: 670 SISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGK 728
SISDGD+ + I QQW L + ++ S + PA+ + GQ + F WLG
Sbjct: 1250 SISDGDLVDRMIHGPQQQWSLMPTHAVFSTVRPASFVSGQLMG--------SNFTSWLGN 1301
Query: 729 NSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQL 771
NS GK R + ++H H K+ + +R Y +L QL
Sbjct: 1302 NSKTGKLSRYVREIHSH--MRLKASGDHNEVRQQYLPVLWHQL 1342
>gi|167390687|ref|XP_001739454.1| replication factor C large subunit [Entamoeba dispar SAW760]
gi|165896833|gb|EDR24155.1| replication factor C large subunit, putative [Entamoeba dispar
SAW760]
Length = 576
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 154/515 (29%), Positives = 252/515 (48%), Gaps = 82/515 (15%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLG-----GLTFVISGTLDSLEREEAEDLIKRHGGR 234
F F +KG K VP G + G FV++G D L+R+E ++ I GG
Sbjct: 132 FNAFSHDTTAKNKGSKIVPRGVGNFFGENEFEKKNFVLTGVYDELDRDEMKEYITNFGGN 191
Query: 235 VTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKS 294
V S+S KT L+ E+ +K KAKE G ED +FD ++ KK
Sbjct: 192 VATSISGKTGVLIAGEEPGPSKIEKAKEKGIAIWNEDDVFDYVK-------------KKL 238
Query: 295 VEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKT 354
+KV T+ PK + + + K I + + WTEKYRP+T
Sbjct: 239 GDKVII--------------TNVPKQTTNQKQQTTNVDKSTNV-INSNEIIWTEKYRPQT 283
Query: 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAA 414
++++GN+ + + +TW+ W + D +A +L+G+PG+GKTT +
Sbjct: 284 KSDLIGNKNQIAKFYTWINKWEKVIPD---------------RRAVLLAGAPGVGKTTVS 328
Query: 415 KLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474
K+V + LGF IE NASD+R K+ +++ IK + N +S +D SK+ K
Sbjct: 329 KIVGKTLGFNPIEFNASDTRNKSSIELA----------IKRIFLNGQIS--IDGSKNKKP 376
Query: 475 VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPR 534
++IMDEVDGMS+GDRGGI +L+ IK ++ PI+CICND +K++ L+N C + F K
Sbjct: 377 LIIMDEVDGMSSGDRGGITELVKYIKETEQPIVCICNDVMDKKMQPLINVCETINFSKIS 436
Query: 535 KQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQR 594
E+ +RL I + EG++V++ L ++A + +GD+R IN LQ ++
Sbjct: 437 VLELTERLKYICDKEGVQVSDENLSQIASKAHGDVRYGINMLQSF-----------VKCG 485
Query: 595 LLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAG 654
+ K+EDI V L E+ ++ D ++P+ + ++ +
Sbjct: 486 VTLGEKNEDIDYVEVVPTLIT-RYSSTSFTEKNEIFFMDNFMMPIYLHDSLL-------- 536
Query: 655 RDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+ S ++++ S + GDIF + + Q W+L
Sbjct: 537 --RAQNFSALSKSFSSFAIGDIFQNLVNKTQNWKL 569
>gi|396081473|gb|AFN83090.1| DNA replication factor C subunit [Encephalitozoon romaleae SJ-2008]
Length = 567
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 180/570 (31%), Positives = 278/570 (48%), Gaps = 105/570 (18%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELG 264
L G FV +G + + R++A+ + GGR T S KT +L+ E+ +K KAKELG
Sbjct: 8 LKGKVFVFTGDM-KISRDDAKTKVMVLGGRCTTVPSSKTTFLVTGENPGASKMQKAKELG 66
Query: 265 TPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIER 324
L E+ +I+ ++K ++ V IE
Sbjct: 67 IEILNEEDFTKLIK-----------NNEKELDNV-----------IEI------------ 92
Query: 325 MKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGT 384
+ + + ++ S W+EKYRP NEIVGN +VKQL E +L T
Sbjct: 93 --GIDTGGNSRVTDVSSLSGIWSEKYRPSKKNEIVGNVGIVKQL--------EDYLQGHT 142
Query: 385 KRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG 444
K KA +LSG PG+GKTT A +VC+ LG +E NASD R K++
Sbjct: 143 KY-----------KAVLLSGQPGVGKTTMAHVVCKYLGLDVVEFNASDVRSKSEI----- 186
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI 504
++ I+ V+++++ + + K VLIMDEVDGMS+ DRGGI +L+ IK + I
Sbjct: 187 -----SSKIRSFVNSQSVYSRESKKK----VLIMDEVDGMSS-DRGGIPELVNVIKEAMI 236
Query: 505 PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR 564
PIICICNDR + K+++L N+C DLRFRKP +++ R+ I + EG +++ L E+ +
Sbjct: 237 PIICICNDRNNLKIRTLSNHCLDLRFRKPDPRQMLSRIRYIIDKEGKRISDGLLNEIIAK 296
Query: 565 VNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLR-- 622
NGDIR AI +Q ++L ++++S + + + +F G +
Sbjct: 297 SNGDIRYAICMVQSIAL-----------RKMVSPSIAKSFVRKNVMKNVFDIAGEVFQRK 345
Query: 623 -MDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQI 681
+ E+IDL D L+PL + EN + P + RD + +SIS GD+ I
Sbjct: 346 SISEKIDLYFEDYSLIPLFVSENILK-TPFKSARD-------LTECFDSISLGDVVEKLI 397
Query: 682 R-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLE 740
R +Q W L+ ++ S +IP G+ T + F WLG+NS K R+L
Sbjct: 398 RGADQDWSLAPLHAVYSVVIPT---KGRPLTKKM------MFPSWLGQNSKHSKAERILY 448
Query: 741 DLHFHHLASRKSKLGRDTLRLDYFSLLLKQ 770
H +S K ++ + LR L+LK+
Sbjct: 449 MASMH--SSCKIRVNTEELRKYALELILKK 476
>gi|402466617|gb|EJW02070.1| hypothetical protein EDEG_03494 [Edhazardia aedis USNM 41457]
Length = 453
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 166/490 (33%), Positives = 253/490 (51%), Gaps = 71/490 (14%)
Query: 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKE 262
D +TFV +G +D + RE+A+ + GGRVT + S KT YL+ + K AKE
Sbjct: 3 DPFHNMTFVFTGDMD-MPREDAQQKVIMLGGRVTTAPSGKTTYLVIGANPGPKKLKVAKE 61
Query: 263 LGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPI 322
L E +M+ ++ +++ + K P+ + + + ++
Sbjct: 62 HNIKVLNEKEFIEMV-----------SKCEENFDDTTVVNVSKGPKIVSSANKTSES--- 107
Query: 323 ERMKTVASPAKR--KGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL 380
KT A K + N SS W EKYRP+ ++VGNQ ++ QL +L
Sbjct: 108 ---KTTAKVCKEDVEYNNEGHSSYMWCEKYRPQKIEDLVGNQTVIDQLKKYLT------- 157
Query: 381 DTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK 440
GK ++AA+LSG+PG+GKTT+A +VC+ LGF+ +E NASD R K
Sbjct: 158 -------GKVN-----KQAALLSGNPGIGKTTSALVVCRDLGFEVVEFNASDVRNK---- 201
Query: 441 ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK 500
G + IK+ ++ ALS+ S K VLIMDE+DGM++ DRGG+A+L IK
Sbjct: 202 ------GEISRQIKDRLNVYALSS----SSIKKRVLIMDEIDGMTS-DRGGLAELSNIIK 250
Query: 501 ISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEE 560
+ +PIICICNDR +QK+++L NYC DLRFRK +++ R+ I EG + E + E
Sbjct: 251 KTSVPIICICNDRSNQKIRTLANYCVDLRFRKLDARQMVPRIKWILEKEGKNIRENMINE 310
Query: 561 LADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK 620
+ NGD+R +N LQ M + + ++ I L + K+ + F V +L F GK
Sbjct: 311 IVKNSNGDLRYCLNTLQNMCIR-ETLSHEQIS---LLTRKNTTKNVFEVVREL--FTSGK 364
Query: 621 LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQ 680
+ E+IDL D + VPL++ ENY++ + K + L A ES+S DI + +
Sbjct: 365 I--SEKIDLYFEDYNFVPLMVYENYVH--------GDAKNIKLFHSAIESMSLSDIVDKR 414
Query: 681 IR-RNQQWQL 689
I Q+W L
Sbjct: 415 IHGTTQEWSL 424
>gi|349602899|gb|AEP98894.1| Replication factor C subunit 1-like protein, partial [Equus
caballus]
Length = 482
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 203/366 (55%), Gaps = 34/366 (9%)
Query: 421 LGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA--------LSANMDRSKHP 472
LG+ +E+NASD+R K NS+KE+V+ S+ + S
Sbjct: 2 LGYSYVELNASDTRSK--------------NSLKEIVAESLNNTSIKGFYSSGLAHSGSM 47
Query: 473 KTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFR 531
K L+MDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR K++SL++YC DLRF+
Sbjct: 48 KHALLMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLIHYCFDLRFQ 107
Query: 532 KPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
+PR ++I +M IA EGL++ A+ E+ N DIR ++ L + YD
Sbjct: 108 RPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQA 167
Query: 592 RQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYR 649
+ + KD + PF K+F G + + ++ DL D + PL +QENYI+ +
Sbjct: 168 KADSHRAKKDIKLGPFDVARKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVK 227
Query: 650 PSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQR 709
P +AG D K L L++RAA+SI DGD+ + QIR Q W L + ++ + ++P LM G
Sbjct: 228 PVAAGGDMKKHLMLLSRAADSICDGDLVDRQIRSKQNWSLLPTQAIYASVLPGELMRG-- 285
Query: 710 ETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLK 769
L Q F F WLGK+S+ GK+ R+++DL H S ++ + T+ ++Y S +
Sbjct: 286 -YLTQ----FPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTYSSKRTVNMEYLSHIRD 338
Query: 770 QLTEPL 775
L +PL
Sbjct: 339 ALVQPL 344
>gi|164424568|ref|XP_963539.2| hypothetical protein NCU06767 [Neurospora crassa OR74A]
gi|157070569|gb|EAA34303.2| hypothetical protein NCU06767 [Neurospora crassa OR74A]
Length = 1086
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 153/455 (33%), Positives = 229/455 (50%), Gaps = 34/455 (7%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
SS WT KY P N+I GN+ V+++ WL +W + KR + + +A I
Sbjct: 480 SSQLWTTKYAPTAMNQICGNKANVEKIQNWLKNWPKSRKYNFQKRGA---DGSGGYRAII 536
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNAN-SIKELVSNE 460
+SG PG+GKTTAA L +M G+ IE NASD+R K I G+ N S+ +
Sbjct: 537 ISGPPGIGKTTAAHLAAKMEGYDVIESNASDTRSKK--LIESGVSEVMTNTSLLGFFGGD 594
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
A+ ++ K VL+MDEVDGMSAGDRGG+ + K +++P+I ICN+R K+K
Sbjct: 595 GKHAD---ARKKKIVLVMDEVDGMSAGDRGGVGTMAKFCKKTEVPLILICNERRLPKMKP 651
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ D++F++P +I R+M I + EGL++ + L + DIR IN +
Sbjct: 652 FDHVAFDIKFQRPTVDQIRSRIMTICHREGLKIPPPVVNALIEGSGRDIRQIINMISTAK 711
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKL------RMDERIDLSMSDP 634
L + + +D +Q + K + P+ KL G GG ++++IDL +D
Sbjct: 712 LDQTTMDFDQSKQMSKAWEKHVILKPWDICQKLIG--GGMFAPSSTATLNDKIDLYFNDH 769
Query: 635 DLVPLLIQENYINYRP-------SSAGRDEVKRLSLIARAAESISDGDIFNVQIR-RNQQ 686
+ L+IQENY+ RP + +K L L+ AAESISDGD+ + I QQ
Sbjct: 770 EFSYLMIQENYLRSRPMVLNQKGYTPREQNLKYLELVDEAAESISDGDLVDRMIHGPQQQ 829
Query: 687 WQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHH 746
W L + ++ S + P++L+ GQ Q F WLG NS GK R ++H H
Sbjct: 830 WSLMPTHAVFSTVRPSSLIAGQFVGQAQ-------FTSWLGNNSKYGKLNRFNREIHAH- 881
Query: 747 LASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKD 781
KS +R Y +L +L + L V KD
Sbjct: 882 -MRLKSSGDAQEIRQQYMPVLWDKLVKRLEVEGKD 915
>gi|18376023|emb|CAB91757.2| related to replication factor C protein [Neurospora crassa]
Length = 1092
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 153/455 (33%), Positives = 229/455 (50%), Gaps = 34/455 (7%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
SS WT KY P N+I GN+ V+++ WL +W + KR + + +A I
Sbjct: 486 SSQLWTTKYAPTAMNQICGNKANVEKIQNWLKNWPKSRKYNFQKRGA---DGSGGYRAII 542
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNAN-SIKELVSNE 460
+SG PG+GKTTAA L +M G+ IE NASD+R K I G+ N S+ +
Sbjct: 543 ISGPPGIGKTTAAHLAAKMEGYDVIESNASDTRSKK--LIESGVSEVMTNTSLLGFFGGD 600
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
A+ ++ K VL+MDEVDGMSAGDRGG+ + K +++P+I ICN+R K+K
Sbjct: 601 GKHAD---ARKKKIVLVMDEVDGMSAGDRGGVGTMAKFCKKTEVPLILICNERRLPKMKP 657
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ D++F++P +I R+M I + EGL++ + L + DIR IN +
Sbjct: 658 FDHVAFDIKFQRPTVDQIRSRIMTICHREGLKIPPPVVNALIEGSGRDIRQIINMISTAK 717
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKL------RMDERIDLSMSDP 634
L + + +D +Q + K + P+ KL G GG ++++IDL +D
Sbjct: 718 LDQTTMDFDQSKQMSKAWEKHVILKPWDICQKLIG--GGMFAPSSTATLNDKIDLYFNDH 775
Query: 635 DLVPLLIQENYINYRP-------SSAGRDEVKRLSLIARAAESISDGDIFNVQIR-RNQQ 686
+ L+IQENY+ RP + +K L L+ AAESISDGD+ + I QQ
Sbjct: 776 EFSYLMIQENYLRSRPMVLNQKGYTPREQNLKYLELVDEAAESISDGDLVDRMIHGPQQQ 835
Query: 687 WQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHH 746
W L + ++ S + P++L+ GQ Q F WLG NS GK R ++H H
Sbjct: 836 WSLMPTHAVFSTVRPSSLIAGQFVGQAQ-------FTSWLGNNSKYGKLNRFNREIHAH- 887
Query: 747 LASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKD 781
KS +R Y +L +L + L V KD
Sbjct: 888 -MRLKSSGDAQEIRQQYMPVLWDKLVKRLEVEGKD 921
>gi|328722322|ref|XP_001945573.2| PREDICTED: replication factor C subunit 1-like [Acyrthosiphon
pisum]
Length = 745
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 157/491 (31%), Positives = 241/491 (49%), Gaps = 48/491 (9%)
Query: 303 PKKSPQN--IEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSL---TWTEKYRPKTPNE 357
P K+P+N I+ S +P T +SP + NI ++ W EKY+P T +
Sbjct: 149 PTKTPENKKIKISSVDSPDTQESGYTTDSSPLQSVKSNIPTGNIESKLWVEKYKPLTLKQ 208
Query: 358 IVGN---QQLVKQLHTWLAHWNEKFLDTGTKRNGK--------KQNDASAEKAAILSGSP 406
I+G + V +L WL W + + G N K K ++ + KAA+LSGSP
Sbjct: 209 IIGQTGEKSNVNKLANWLKSW---YSNHGVGVNKKLTRPSPWAKDDNGAFFKAALLSGSP 265
Query: 407 GMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANM 466
G+GKTT A LVC+ LGF +E NASD+R K K + + + + + L
Sbjct: 266 GVGKTTTAHLVCKELGFDIVEFNASDTRSK------KQLQNNVSELLSSTSLSPFLGGKS 319
Query: 467 DRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
KH L+MDEVDGM+ DRGG+ +LI IK +K P+IC+CNDR K+++L NYC
Sbjct: 320 VTKKH---ALLMDEVDGMAGNEDRGGVQELIILIKNAKCPVICMCNDRNHPKIRTLSNYC 376
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV 585
DLRF KP+ ++I +M I E L+++ L + + DIR+ +N L ++
Sbjct: 377 FDLRFHKPKLEQIKAAMMSICYKEKLKISPETLSSIIASTDNDIRLTLNHLSVVAAG--- 433
Query: 586 IKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQEN 644
+ L + K + P+ V K+F K + + ++ DL D ++ PL +QEN
Sbjct: 434 ------KDNLNINKKYIKMGPWDVVRKVFSAEEHKSMNITDKCDLFFYDYNISPLFVQEN 487
Query: 645 YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAAL 704
Y+ P + K + AA+SI GDI + +IR W L + ++ S P
Sbjct: 488 YLAAVPHDVEGSKWKTFERYSLAADSIRIGDIVSAKIRSTNNWSLLPAQAIFSSYCPGEF 547
Query: 705 MHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYF 764
+ G + N F WLGK S K RLL++L H + ++ + LDY
Sbjct: 548 LRGHV------SKQIN-FPAWLGKFSKGNKMNRLLQELQIH--TRIRLSASKEAINLDYL 598
Query: 765 SLLLKQLTEPL 775
+ L ++ +PL
Sbjct: 599 TTLRNKILKPL 609
>gi|68062632|ref|XP_673324.1| replication factor C subunit 1 [Plasmodium berghei strain ANKA]
gi|56491097|emb|CAH96916.1| replication factor C subunit 1, putative [Plasmodium berghei]
Length = 512
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 173/533 (32%), Positives = 266/533 (49%), Gaps = 60/533 (11%)
Query: 233 GRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDG-LFDMIRASKPMKALAQAES 291
G V +VS KT+YL+ E + EDG L++ K KA ++
Sbjct: 1 GSVMSAVSSKTHYLIHGEYL-----------------EDGRLYN--EGKKYQKAYELSKQ 41
Query: 292 KKSVEKV------AASLPKK---SPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQS 342
KS+ K+ LPK+ + QN ++ + + MK + + Q
Sbjct: 42 SKSIIKILNEEELLELLPKQKNENSQNYQSNTEQNHHILNQNMKNEQEQEQNVSHVLNQ- 100
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE----K 398
W +KY+P ++VGN Q V +L TWL+ W++ + G K+ K + E K
Sbjct: 101 --LWVDKYKPTKIEDLVGNTQNVFKLKTWLSSWDDVCIK-GLKKQVTKTFRGNFENVNAK 157
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADA-KI-SKGIGGSNANSIKEL 456
A+LSG G+GKTT AK+V G+ IE NASD R KA KI GG + S+
Sbjct: 158 CALLSGPAGIGKTTTAKIVSTSSGYNVIEFNASDERNKAAVEKIGDMATGGYSITSL--- 214
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQ 516
+N+ L KT +IMDEVDGMS+GD+GG + ++ I+ +K PIICICNDR +
Sbjct: 215 -NNKNL---------KKTCIIMDEVDGMSSGDKGGSSAILKLIEKTKCPIICICNDRQNS 264
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
K+++L N C DL+F P K + KRL++I E + + ALE L + NGDIR +N L
Sbjct: 265 KMRTLANKCYDLKFTTPNKNSVVKRLLEICKKENIMMEPNALELLWESSNGDIRQILNAL 324
Query: 577 QYMSLSLSVIKYDDIRQRLLSSAKDED--ISPFTAVDKLFGFN-GGKLRMDERIDLSMSD 633
Q +S + I++ DI++ + +S K+ +PF KL F+ KL++ E +DL D
Sbjct: 325 QLLSKTYKRIQFLDIKKDINNSNKNVQSLANPFEITLKLLNFHESSKLKIREIMDLFFVD 384
Query: 634 PDLVPLLIQENYIN-YRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQS 692
+L+P I ENY N + + + + + + A+ + +S + ++ + L
Sbjct: 385 YELIPYFISENYTNIFNDNDNSPNSMNKWNTFAQISYDLSLAEKIKYNLKTTMDYSLLPH 444
Query: 693 SSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH 745
S+ SC+ P + + + QG N F GK ST KN RLL +L F+
Sbjct: 445 FSILSCVCPVMRIRSLK-SFMQGRIN---FPSAFGKISTFNKNKRLLNELCFN 493
>gi|303389467|ref|XP_003072966.1| DNA replication factor C subunit [Encephalitozoon intestinalis ATCC
50506]
gi|303302109|gb|ADM11606.1| DNA replication factor C subunit [Encephalitozoon intestinalis ATCC
50506]
Length = 566
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 180/588 (30%), Positives = 281/588 (47%), Gaps = 105/588 (17%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELG 264
L G FV +G + + R++A+ + GGR T + S KT++L+ ++ K KA EL
Sbjct: 8 LKGKVFVFTGDM-KMSRDDAKARVMVLGGRCTTAPSSKTSFLVVGDNPGPMKIQKANELN 66
Query: 265 TPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIER 324
L E+ ++ + NI+ S++ +
Sbjct: 67 IKILNEEEFVKLVES-----------------------------NIDDFSSTPETEKHLK 97
Query: 325 MKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGT 384
M P K G + S W EKYRPK +EI+GN ++KQL E +L T
Sbjct: 98 M----DPEKGGGSAL---SSVWNEKYRPKRKDEIIGNPGIMKQL--------EDYLQGCT 142
Query: 385 KRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG 444
K KAA+LSG PG+GKTT A +VC+ LGF +E NASD R K++
Sbjct: 143 KY-----------KAALLSGHPGIGKTTMAHIVCRSLGFDVVEFNASDIRNKSEI----- 186
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI 504
++ ++ +++++ + + K LIMDEVDGMS+ DRGGI +L++ IK + I
Sbjct: 187 -----SSKVRSFTNSQSICSGTSKKK----ALIMDEVDGMSS-DRGGIPELVSVIKKTTI 236
Query: 505 PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR 564
PIICICNDR + K+++L N+C DLRFRKP + + R+ I EG + + L E+ +
Sbjct: 237 PIICICNDRNNLKIRTLSNHCLDLRFRKPDSRPVLLRIKHILEKEGKRIPDGVLSEIIAK 296
Query: 565 VNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLR-- 622
NGDIR AI+ +Q +SL +R L+S+ + + + LF G +
Sbjct: 297 SNGDIRYAISMVQGISL-----------RRTLNSSISTNFVKKSVMKSLFDVAGEVFQRK 345
Query: 623 -MDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQI 681
+ E+IDL D LVPL + EN + + K L ++ +SIS GD+ I
Sbjct: 346 SVSEKIDLYFEDYSLVPLFVSENVL--------KTSFKSLGDLSECFDSISLGDVVERLI 397
Query: 682 R-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLE 740
R Q W L+ ++ S +IP G+ T + F WLG+NS K R L
Sbjct: 398 RGAGQDWSLAPLHAVYSVVIPT---RGRPLTKKM------MFPSWLGQNSKHLKAERALH 448
Query: 741 DLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDELLRKLL 788
H +S + + + LR L+L++ + L+ D+ + ++
Sbjct: 449 TASVH--SSCRIRANAEELRKYALELILRRYSCHLKACSIDKAIDNII 494
>gi|401886437|gb|EJT50471.1| purine nucleotide binding protein [Trichosporon asahii var. asahii
CBS 2479]
Length = 955
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 180/601 (29%), Positives = 295/601 (49%), Gaps = 57/601 (9%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P + G K++PEG PDCL GLT V +G L+SL R++A ++ KR+G Y++
Sbjct: 252 PRNPGSKDIPEGKPDCLAGLTLVFTGELESLGRDDAIEIAKRYGA-----------YVVI 300
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMI--RASKPMKALAQAESKKSVEKVAASLPKKS 306
++ +K K KE+GTP L EDG D+I R +P +A + K+ + A+ +
Sbjct: 301 GDNAGPSKLKKIKEIGTPTLDEDGFLDLIRNRDEEPDEATLKKREKEEKKIREAAAEMEK 360
Query: 307 PQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVK 366
+ E + +A + + +P+ + + + R + G ++
Sbjct: 361 QEREEERLRKRKEAALGKTGVATNPSLCPALDHEVRTQERQGDLRKQGTGREAG--RMAG 418
Query: 367 QLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426
QL+ +G ++ GK + + +A ++SG PG+GKTT+A + G+ +
Sbjct: 419 QLN----------YKSGFRKPGK--DGSGLYRAVLISGPPGIGKTTSAHIKALESGYSPL 466
Query: 427 EVNASDSRGKADAKISKGIGGSNANSI--KELVSNEALSANMDRSKHPKTVLIMDEVDGM 484
E+NASD+R K + + I ++ + + V + ++ D S +T LIMDEVDGM
Sbjct: 467 ELNASDTRSKKLIENATNIDNTSLDGYFAGKGVMSTTVTGIDDLSS--RTCLIMDEVDGM 524
Query: 485 SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544
SAGDRGG+ L A IK K+K L +++ FR+P EI R++
Sbjct: 525 SAGDRGGVGALNALIK--------------KTKMKPLWGTTANMAFRRPGPLEIRARILS 570
Query: 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDI 604
I + E L++ ++EL DIR +N L L S + +D+ ++ L + K+ +
Sbjct: 571 ILHKEKLKIPTNVVDELIKGTGSDIRQVLNMLSTYKLGKSEMNFDEGKELLKLNEKNTIM 630
Query: 605 SPFTAVDKLFG---FN-GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPS-----SAGR 655
+PFT +DKL G F+ K + +R+++ D VPL +QE+Y+ P+
Sbjct: 631 TPFTIIDKLTGPYSFSRTSKDTLSDRMEMYFHDFSFVPLFMQEHYLKTNPAVLNNLDGPE 690
Query: 656 DEVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQ 714
++K L LI++AA+ ISDGD+ + I +Q W L ++ S + PA ++G
Sbjct: 691 KDMKNLELISKAADWISDGDLVDKMIHGGEQHWSLLPLHAVTSTVAPAYNIYGTNRATPG 750
Query: 715 GERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEP 774
G F WLG+NS GK R L D+ + R S GRD +R Y LL +L P
Sbjct: 751 GGWGGPSFPQWLGQNSKQGKLQRELTDIQI-RMRLRVSG-GRDEIRQQYMPLLANKLVTP 808
Query: 775 L 775
L
Sbjct: 809 L 809
>gi|406698464|gb|EKD01701.1| purine nucleotide binding protein [Trichosporon asahii var. asahii
CBS 8904]
Length = 955
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 180/601 (29%), Positives = 295/601 (49%), Gaps = 57/601 (9%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLC 248
P + G K++PEG PDCL GLT V +G L+SL R++A ++ KR+G Y++
Sbjct: 252 PRNPGSKDIPEGKPDCLAGLTLVFTGELESLGRDDAIEIAKRYGA-----------YVVI 300
Query: 249 DEDIAGAKSTKAKELGTPFLTEDGLFDMI--RASKPMKALAQAESKKSVEKVAASLPKKS 306
++ +K K KE+GTP L EDG D+I R +P +A + K+ + A+ +
Sbjct: 301 GDNAGPSKLKKIKEIGTPTLDEDGFLDLIRNRDEEPDEATLKKREKEEKKIREAAAEMEK 360
Query: 307 PQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVK 366
+ E + +A + + +P+ + + + R + G ++
Sbjct: 361 QEREEERLRKRKEAALGKTGVATNPSLCPALDHEVRTQERQGDLRKQGTGREAG--RMAG 418
Query: 367 QLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426
QL+ +G ++ GK + + +A ++SG PG+GKTT+A + G+ +
Sbjct: 419 QLN----------YKSGFRKPGK--DGSGLYRAVLISGPPGIGKTTSAHIKALESGYSPL 466
Query: 427 EVNASDSRGKADAKISKGIGGSNANSI--KELVSNEALSANMDRSKHPKTVLIMDEVDGM 484
E+NASD+R K + + I ++ + + V + ++ D S +T LIMDEVDGM
Sbjct: 467 ELNASDTRSKKLIENATNIDNTSLDGYFAGKGVMSTTVTGIDDLSS--RTCLIMDEVDGM 524
Query: 485 SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544
SAGDRGG+ L A IK K+K L +++ FR+P EI R++
Sbjct: 525 SAGDRGGVGALNALIK--------------KTKMKPLWGTTANMAFRRPGPLEIRARILS 570
Query: 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDI 604
I + E L++ ++EL DIR +N L L S + +D+ ++ L + K+ +
Sbjct: 571 ILHKEKLKIPTNVVDELIKGTGSDIRQVLNMLSTYKLGKSEMNFDEGKELLKLNEKNTIM 630
Query: 605 SPFTAVDKLFG---FN-GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPS-----SAGR 655
+PFT +DKL G F+ K + +R+++ D VPL +QE+Y+ P+
Sbjct: 631 TPFTIIDKLTGPYSFSRTSKDTLSDRMEMYFHDFSFVPLFMQEHYLKTNPAVLNNLDGPE 690
Query: 656 DEVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQ 714
++K L LI++AA+ ISDGD+ + I +Q W L ++ S + PA ++G
Sbjct: 691 KDMKNLELISKAADWISDGDLVDEMIHGGEQHWSLLPLHAVTSTVAPAYNIYGTNRATPG 750
Query: 715 GERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEP 774
G F WLG+NS GK R L D+ + R S GRD +R Y LL +L P
Sbjct: 751 GGWGGPSFPQWLGQNSKQGKLQRELTDIQI-RMRLRVSG-GRDEIRQQYMPLLANKLVTP 808
Query: 775 L 775
L
Sbjct: 809 L 809
>gi|443927152|gb|ELU45674.1| purine nucleotide binding protein [Rhizoctonia solani AG-1 IA]
Length = 1048
Score = 228 bits (582), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 221/749 (29%), Positives = 337/749 (44%), Gaps = 111/749 (14%)
Query: 104 VPPSVKKNSVGATPSKKLKSGSGRAVAQKSVDIDDD--EEEDVKKTESPLKSSGRGRGGR 161
P S K V +P KK + R KS ++++ E + V K + + + RG
Sbjct: 192 TPMSEKPTPVLKSPPKKTNASRNR----KSSPVEEEAPEHKPVPKAKKDVPTKKRGSSPV 247
Query: 162 GA----SGAPAVGRGRGGGRGGFMNFGERKD---------PPHKGEKEVPEGAPDCLGGL 208
+ PA+ +G G NF P G KEVP G P+ L GL
Sbjct: 248 ASDDDTPAKPAIKKGGWNRPTGDQNFDAAMAAAKAAKASGPSAPGSKEVPNGHPNALAGL 307
Query: 209 TFVISGTLDSLEREEAEDLIKRHG-----GRVTGSVSKKTNYLLCDEDIAGAKSTKAKEL 263
TFV +G L S R+EA+DL + H RVTG S KT++++ E K K L
Sbjct: 308 TFVFTGELSSFSRDEAQDL-RFHSMTCATSRVTGQASSKTSFVVIGEGAGPGKMKKVTSL 366
Query: 264 GTPFLTEDGLFDMIRASKPMKALAQAESKKSV---------------EKVAASLPKKSPQ 308
G L EDG ++I ++ K A+A+ K+ E+ AA KK
Sbjct: 367 GIKTLDEDGFLNLI-GTREGKLDAKAQEKQKQEEEKIKQAARDMERREREAAKEAKKGQS 425
Query: 309 NIEAKSTSA-PKAPIE-RMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVK 366
A+S + PI+ + ++PA Q WT KY P++ ++ GN+ LV
Sbjct: 426 AGTARSVFLFQRLPIKLNLYPSSAPAPPTAQ-------LWTTKYAPQSLKDVCGNKALVD 478
Query: 367 QLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426
+L WL W G K+ GK N + +A +L+G PG+GKTT+A LV + G+ I
Sbjct: 479 KLQLWLHEWQAS-AKAGFKKPGK--NGMNTSRAVLLAGPPGIGKTTSAHLVAKAEGYTPI 535
Query: 427 EVNASDSRGKADAKIS--------------KGIGGSNANSIKELVSNEALSANMDRSKHP 472
E+NASD+R K ++S K N S+ ++ + +SA M+ +
Sbjct: 536 ELNASDTRSKKLLEVSMSTLFRSKVAEATLKNSANINNTSLDGWMAGQGVSAGMEITD-- 593
Query: 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRK 532
+TVLIMDEVDGMSAGDRGG++ LI+ IK +K+ N + LKSL++ L FRK
Sbjct: 594 RTVLIMDEVDGMSAGDRGGVSALISLIKKTKVGRNFRSNHD-TNALKSLLHSAFRLSFRK 652
Query: 533 PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIR 592
P Q I R++ IA E +++ +++L DIR +N L LS + +D+ +
Sbjct: 653 PEPQAIRSRILTIAFKEKMKIPANVIDQLIAGTQSDIRQVLNMLSTWKLSHDTMDFDEGK 712
Query: 593 QRLLSSAKDEDISPFTAVDKLFG---FNG-GKLRMDERIDLSMSDPDLVPLLIQENYINY 648
+ + SPF +++ G F+ + ++++I++ D VPL IQ ++ +
Sbjct: 713 ELYAIIPQ----SPFEVTNQILGPYTFSATSRHTLNDKIEMYFHDHAFVPLFIQAGHLKW 768
Query: 649 RPSSAGRDEVKRLSLIARAAESISDG--DIFNVQIRR---NQQWQLSQSSSLASCIIPAA 703
VK L L+ E D + F +R Q W L ++ S + PA+
Sbjct: 769 -------PAVKDLILL-ETGELPQDATRENFEAIWQRCCTGQHWSLMPLHAVTSTVRPAS 820
Query: 704 LMHGQ--------RETLEQ---------GERNFNRFGGWLGKNSTMGKNLRLLEDLHFHH 746
++G + T Q G R + R WLG+NS GK R L D+
Sbjct: 821 FLYGTGLGYGGPLQMTFPQYAGGFLIMYGPRTY-RLIRWLGQNSKQGKLQRQLGDIQIR- 878
Query: 747 LASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
K + +R Y LL +L PL
Sbjct: 879 -MRLKVSGNKAEIRQSYIPALLPRLVRPL 906
>gi|224007511|ref|XP_002292715.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971577|gb|EED89911.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1233
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 175/516 (33%), Positives = 257/516 (49%), Gaps = 71/516 (13%)
Query: 304 KKSPQNIEAK--STSAPKA--PIERMKTVASPAKRKGQN--IQQSSLTWTEKYRPKTPNE 357
KKSP N A S+S P + P ++ ++ + + + ++L W +KY P E
Sbjct: 588 KKSPANPYAAKLSSSVPSSAHPAQKFGAASTTTHHQDHSGKVHINAL-WADKYAPINTQE 646
Query: 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE-KAAILSGSPGMGKTTAAKL 416
I+GN V +L WL +W +F KR K + + KAA+LSG PG+GKTT A L
Sbjct: 647 ILGNGGNVSKLTNWLKNWEHQF--NNPKRKVKSVSGPNGPWKAALLSGPPGIGKTTTATL 704
Query: 417 VCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKH--PKT 474
V + G +E+NASD+R K +S+ +G + + + + + KH K
Sbjct: 705 VARESGRDLLELNASDARSKKS--LSQALGDVTGSQVLNFRTGDG------KVKHVAQKR 756
Query: 475 VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPR 534
+IMDEVDGM AGDR G+++LI IK SK+PIICICNDR SQK+KSLV YC DLRF++P
Sbjct: 757 CIIMDEVDGMGAGDRSGMSELIQMIKNSKVPIICICNDRSSQKMKSLVQYCMDLRFQRPN 816
Query: 535 KQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL------SLSVIKY 588
K+ I +R ++I EG+EV E A E +++ DIR +N +Q S S + Y
Sbjct: 817 KKTIGRRAVEIGRVEGMEVEENAAEAMSESCGNDIRQVLNCMQMWSCKKNEAGQSSSVTY 876
Query: 589 DDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMD-----------------ERIDLSM 631
D++ R KDE V ++ F+ KL ++ +R D
Sbjct: 877 KDLKDRQSDINKDE-------VLRVSMFDATKLIVEGPRDTGSDAKKNNDSFFKRTDAFF 929
Query: 632 SDPDLVPLLIQENYI-----NYRPSSAGRD---EVKRLSLIARAAESISDGDIFNVQIR- 682
D L+ L I +NY+ Y + D E+ L + A ++SD I +R
Sbjct: 930 VDYMLMGLNIHQNYLKVCVGQYNNAKTRGDDDLELAALDAVHDATLAMSDFGIVEENLRG 989
Query: 683 RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGER-NFNRFGGWLGKNSTMGKNLRLLED 741
+Q W L L C + AA + G + F GWLGKNST K +RLL +
Sbjct: 990 GDQNWAL-----LPLCSVLAAKVGFHAGGPTGGFLPGYPEFAGWLGKNSTRNKKIRLLGE 1044
Query: 742 LHFHHLASRKSKLGRDT--LRLDYFSLLLKQLTEPL 775
L HH+ K+ D+ LR++Y ++ +Q E L
Sbjct: 1045 LR-HHM---NFKVSADSPELRMNYLPIMREQFQELL 1076
>gi|452847848|gb|EME49780.1| hypothetical protein DOTSEDRAFT_40924, partial [Dothistroma
septosporum NZE10]
Length = 611
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 152/466 (32%), Positives = 239/466 (51%), Gaps = 31/466 (6%)
Query: 327 TVASPAKRKGQNIQQSS----LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDT 382
T A P RKG+ + +S WT +Y P++ N+I GN+ V++L WL + K
Sbjct: 1 TGAKPESRKGKGQESASGVDSRLWTVRYAPQSLNQICGNKTQVEKLQRWLRAF-PKNQSK 59
Query: 383 GTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKIS 442
G K G + + +A ++ G PG+GKTTAA LV +M GF +E NASD+R K +
Sbjct: 60 GFKMAGP--DGSGVHRAVMIHGPPGIGKTTAAHLVAKMEGFDVVESNASDTRSKK--LVE 115
Query: 443 KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKIS 502
G+ G S L+ + A+ + K LIMDEVDGMSAGDRGG+ L A K +
Sbjct: 116 TGLKG--VLSTTSLMGYFSHGADDVEASKKKLCLIMDEVDGMSAGDRGGVGALAAVCKKT 173
Query: 503 KIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELA 562
+IP+I ICNDR K+K DL FR+P ++I R+M I EGL++ + L
Sbjct: 174 QIPMILICNDRKLPKMKPFDFVTYDLPFRRPTTEQIRARIMTINYREGLKMPVNVINALI 233
Query: 563 DRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG---FN-G 618
+ DIR +N + L + +++ + + K + P+ V K+ G FN
Sbjct: 234 EGSGADIRQVVNMVSTAKLDSENMTFEESKDMSKAWEKHMVLKPWDMVGKILGGGLFNPA 293
Query: 619 GKLRMDERIDLSMSDPDLVPLLIQENYINYRP-------SSAGRDEVKRLSLIARAAESI 671
++++ +L +D D PL++Q+NY+ P S + + L L+++AA+SI
Sbjct: 294 ANSTLNDKSELYFNDHDFAPLMLQQNYLGTNPQRSNKYNSEPKKKNLATLDLVSKAADSI 353
Query: 672 SDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNS 730
SDGD+ + I QQW L + ++ S + PA+ ++G G R F W+G NS
Sbjct: 354 SDGDLVDRMIHGSQQQWSLMPAHAIFSFVRPASFVYGSM----AGHR--TEFTAWMGNNS 407
Query: 731 TMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLR 776
GK +R ++++ H ++ R +R Y LL +L + L+
Sbjct: 408 KQGKLMRFVKEIQGH--MRLRTSADRHEIRQTYMPLLFDKLIKKLQ 451
>gi|255724588|ref|XP_002547223.1| activator 1 95 kDa subunit [Candida tropicalis MYA-3404]
gi|240135114|gb|EER34668.1| activator 1 95 kDa subunit [Candida tropicalis MYA-3404]
Length = 695
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 178/594 (29%), Positives = 291/594 (48%), Gaps = 51/594 (8%)
Query: 216 LDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDG--- 272
+ +L+R AE K++G VT S+S +T+ ++ + +K K +L + E G
Sbjct: 1 MPNLDRTTAEQTAKQYGANVTKSISGRTSLVVLGAEAGPSKVKKINQLKIKAIDEAGFIK 60
Query: 273 LFDMIRASK-PMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVA-- 329
L +M+ A +A +A+ K+ E+ A K + E + KA + +
Sbjct: 61 LLEMMPADGGSGEAAERAKEKREKEERAIIEQAKLEEKQEKAREAERKAKLAATAVSSST 120
Query: 330 -----------SPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK 378
SP + +++ WT+++ P +++ GN+ +++L WL +W
Sbjct: 121 STSSSQKGHSISPPSSQLKDVPAKDKLWTDRHAPTDISQLCGNKGQIRKLQEWLENWF-- 178
Query: 379 FLDTGTKRNGKKQNDA-SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA 437
T R K +D+ SA +A ++SG PG+GKT+AA LV + LG+ +E NASD R
Sbjct: 179 ---TYQARGFKGPSDSPSAFRAMLISGPPGIGKTSAAHLVAKSLGYDVLERNASDVR--- 232
Query: 438 DAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT----VLIMDEVDGMSAGDRGGIA 493
SK + +N SI S N D + T +IMDEVDGMS+GD GG
Sbjct: 233 ----SKSLLNANVKSILNNTSVVGFFKNRDDKEQQNTSKKFCIIMDEVDGMSSGDHGGAG 288
Query: 494 DLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEV 553
L KI+K+P+I ICND+ K+++ DL FR+P + E+ RLM IA E +++
Sbjct: 289 ALSQFCKITKMPMILICNDKSLPKMRTFDRVTYDLPFRRPSENEVKSRLMTIAFREKIKL 348
Query: 554 NEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKL 613
+ + +L + DIR IN L +S + I + +++ +K + PF +L
Sbjct: 349 DPNVIGQLVQATSNDIRQMINLLSTVSKTQKEIGANSMKEVREGWSKQVVLKPFDIAGRL 408
Query: 614 FG---FNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAES 670
+ K +D+++ L +D D PL+IQEN + +P G K L+ +A+AA+
Sbjct: 409 LSSGIWIAPKSTIDDKLSLYFNDFDFSPLMIQENLLITKPRLPG----KPLNHVAQAADD 464
Query: 671 ISDGDIFNVQIRR-NQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKN 729
IS D N IR QQW L + S + P+ + GQ G NF+ WLG+N
Sbjct: 465 ISLSDTVNSLIRSGEQQWSLLPFHGIMSTVKPSYEVAGQ----VLGRLNFS---SWLGQN 517
Query: 730 STMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDEL 783
S K R+L++L +H ++ + LRLDY L +++++P+ L D L
Sbjct: 518 SKQMKYQRMLQELQYHTRV--RTSTTKQELRLDYLDTLWEKISKPINELGSDGL 569
>gi|340975788|gb|EGS22903.1| replication factor C subunit-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 1041
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 150/459 (32%), Positives = 238/459 (51%), Gaps = 51/459 (11%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQ--NDASAEKAA 400
S WT KY P N+I GN+Q V+++ +WL +W + K N +K+ + +A
Sbjct: 446 SQLWTTKYAPTQLNQICGNKQNVEKIQSWLRNWPK-----ARKWNFQKRGADGMGGYRAI 500
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
I+SG PG+GKTTAA L ++ G+ IE NASD+R K + + ++++N
Sbjct: 501 IISGPPGIGKTTAAHLAAKLEGYDVIESNASDTRNKKLVE----------EGVTDILNNT 550
Query: 461 AL-------SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDR 513
+L +D +K + VLIMDEVDGMSAGDRGG+ L + +++P+I ICNDR
Sbjct: 551 SLLGYFAGDGKKVDATKK-RIVLIMDEVDGMSAGDRGGVGALAKLCRKTEVPMILICNDR 609
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
K+K + D++F++P +I R+M I + EGL+++ L L + DIR I
Sbjct: 610 RLPKMKPFDHVAFDIKFQRPTVDQIRSRMMTICHREGLKMSPPVLNALIEGSGKDIRQII 669
Query: 574 NQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKL------RMDERI 627
N L L + + +D + + K + P+ KL GG ++++I
Sbjct: 670 NMLATAKLDQTTMDFDQTKAMTKAWEKHVILKPWDICQKLIA--GGMFSPASNATLNDKI 727
Query: 628 DLSMSDPDLVPLLIQENYINYRPSSA-GR-------DEVKRLSLIARAAESISDGDIFNV 679
+L +D + L+IQENY+ RP++ GR + +K L L+ AAESISDGD+ +
Sbjct: 728 ELYFNDHEFSFLMIQENYLRSRPAALNGRNFANPREENLKYLELVDLAAESISDGDLVDC 787
Query: 680 QIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRL 738
I QQ W L + ++ S + PA+ + G G+ F WLG NS GK R
Sbjct: 788 MIHGPQQHWSLMPTHAVFSTVRPASFIAGSL----GGQTTFTT---WLGNNSKYGKLSRF 840
Query: 739 LEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRV 777
+ ++H H +S + +R +Y +L ++L + L V
Sbjct: 841 VREIHSH--MRLRSSGDHNEIRQEYMPVLWQRLVKRLEV 877
>gi|310794495|gb|EFQ29956.1| replication factor RFC1 C terminal domain-containing protein
[Glomerella graminicola M1.001]
Length = 1026
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 152/459 (33%), Positives = 232/459 (50%), Gaps = 47/459 (10%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WT KY P N I GN+ V+++ WL +W +K +R G + +A I+SG
Sbjct: 451 WTSKYAPTQLNHICGNKAQVEKIQAWLKNW-QKARKYDFQRRG--ADGMGGTRAIIISGP 507
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL--- 462
PG+GKTTAA L ++ GF IE NASD+R K + N + ++++N +L
Sbjct: 508 PGIGKTTAAHLAAKLAGFDVIESNASDTRSKKLVE----------NGVSDVMNNTSLLGF 557
Query: 463 ----SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+D K VLIMDEVDGMSAGDRGG+ L K ++IP+I +CN+R K+
Sbjct: 558 FAGDGKKVDGEKK-NIVLIMDEVDGMSAGDRGGVGALAKFCKKTEIPLILVCNERKLPKM 616
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
K D+ FR+P +++ R+M I + EGL++ ++ L + N DIR IN +
Sbjct: 617 KPFDFVAMDVPFRRPTVEQVRSRIMTICHREGLKLPVPVVDALIEGSNKDIRQIINMIST 676
Query: 579 MSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGG------KLRMDERIDLSMS 632
L + + YD + + K + P+ K+ GG K ++E+I+L +
Sbjct: 677 AKLDQASMSYDKGKAMTKAWEKHVILKPWDICQKMLA--GGLFAPSSKTTLNEKIELYFN 734
Query: 633 DPDLVPLLIQENYINYRPSSAG------RDE-VKRLSLIARAAESISDGDIFNVQIR-RN 684
D + L+IQENY+ +P + R+E +K L L+ +AAESISDGD+ + I
Sbjct: 735 DHEFSYLMIQENYLRTKPMALNNRGYNKREENLKYLELVDQAAESISDGDLVDRMIHGPQ 794
Query: 685 QQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHF 744
QQW L + ++ S + P++ + GQ + F WLG NS GK R + +LH
Sbjct: 795 QQWSLMPTHAVFSTVRPSSFVAGQLMG--------SNFTSWLGNNSKTGKLGRYVRELHS 846
Query: 745 HHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDEL 783
H +S + +R Y +L Q L V KD +
Sbjct: 847 HM--RLRSSGDANEIRQQYLPVLWDQTVRRLSVEGKDSV 883
>gi|440302268|gb|ELP94590.1| replication factor C large subunit, putative [Entamoeba invadens
IP1]
Length = 762
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 163/539 (30%), Positives = 254/539 (47%), Gaps = 96/539 (17%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGG-----LTFVISGTLDSLEREEAEDLIKRHGGR 234
F F +KG K VP+G G FV++G + L+R+E ++ I+ GG
Sbjct: 143 FTPFSHDTTAKNKGSKFVPKGKGTFFGEDEFERKNFVLTGVYEELDRDEMKNFIQDFGGN 202
Query: 235 VTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKS 294
V S+S KT+ ++ +D +K KA+E G +ED + +
Sbjct: 203 VATSISGKTHVIVAGDDAGPSKLAKAQEKGLLVWSEDDVLNY------------------ 244
Query: 295 VEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQ----NIQQSSLTWTEKY 350
++ K + KSTS T + K KG+ ++ + WTEKY
Sbjct: 245 ------AIKKLGITDTTIKSTSG---------TTENGGKDKGEVKILSVNNDNDIWTEKY 289
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGK 410
RP+T ++VGN+ V + WL W +N +A +L+GSPG+GK
Sbjct: 290 RPQTIEDLVGNKTQVMKFKKWLESW---------------KNVIPDRQAVLLAGSPGVGK 334
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSK 470
TT AK++ +++G+ A+E NASD R K S + +K+++ N +S
Sbjct: 335 TTTAKILARVMGYNAVEFNASDVRNKK----------SVSAELKKVLLNGQISRG---ET 381
Query: 471 HPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRF 530
+ ++IMDEVDGMS+GDRGGIA+L+ IK + PI+CICND +K++SLVN C + F
Sbjct: 382 YKPALVIMDEVDGMSSGDRGGIAELVQFIKKTTSPIVCICNDVMDKKMQSLVNVCETINF 441
Query: 531 RKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ-YMSLSLSVIKYD 589
K ++ RL I E +EV +EE+A + +GD+R AIN LQ + +S+
Sbjct: 442 VKITPNDLETRLSVILKNENIEVASEKIEEIAKKSHGDVRYAINVLQTFCKCGMSI---- 497
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYR 649
K+ED+ + L K +E+I+L D +VP Y
Sbjct: 498 --------GEKNEDVDYIEIIPTLIT-QYWKTSFNEKINLFFMDTFMVPF--------YL 540
Query: 650 PSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQ 708
S R + +LS + +A +S GDIF + + Q W+L +S L I +GQ
Sbjct: 541 HDSLWRGQ--QLSHLGKALQSFCLGDIFQNCVMKTQNWKLMPTSGLFKLGITT--FYGQ 595
>gi|380484477|emb|CCF39974.1| replication factor RFC1 C terminal domain-containing protein
[Colletotrichum higginsianum]
Length = 1039
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 152/459 (33%), Positives = 234/459 (50%), Gaps = 47/459 (10%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WT KY P N I GN+ V+++ WL +W+ K +R G + A ++ I+SG
Sbjct: 454 WTSKYAPTQINHICGNKAQVEKIQAWLENWH-KAKKYDFQRRG--ADGMGATRSIIISGP 510
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL--- 462
PG+GKTT+A L ++ GF IE NASD+R K + N + ++++N +L
Sbjct: 511 PGIGKTTSAHLAAKLAGFDVIESNASDTRSKKLVE----------NGVSDVMNNTSLLGF 560
Query: 463 ----SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+D K VLIMDEVDGMSAGDRGG+ L K ++IP+I ICN+R K+
Sbjct: 561 FAGDGKKVDGGKK-NIVLIMDEVDGMSAGDRGGVGALAKFCKKTEIPLILICNERKLPKM 619
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
K D+ FR+P +++ R+M I + EGL++ ++ L + N DIR IN +
Sbjct: 620 KPFDFVAMDVPFRRPTVEQVRSRIMTICHREGLKLPVQVIDALIEGSNKDIRQIINMIST 679
Query: 579 MSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGG------KLRMDERIDLSMS 632
L + + +D + + K + P+ K+ G GG K ++E+I+L +
Sbjct: 680 AKLDQASMDFDKGKAMSKAWEKHVILKPWDICQKMLG--GGLFAPASKTTLNEKIELYFN 737
Query: 633 DPDLVPLLIQENYINYRPSSAG------RDE-VKRLSLIARAAESISDGDIFNVQIR-RN 684
D + L+IQENY+ +P + R+E +K L L+ +AAESISDGD+ + I
Sbjct: 738 DHEFSYLMIQENYLRTKPMALNNRGYNKREENLKYLELVDQAAESISDGDLVDRMIHGPQ 797
Query: 685 QQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHF 744
QQW L + ++ S + P++ + GQ + F WLG NS GK R + +LH
Sbjct: 798 QQWSLMPTHAIFSTVRPSSFVAGQLMG--------SNFTSWLGNNSKTGKLGRYVRELHS 849
Query: 745 HHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDEL 783
H +S + +R Y +L Q L V KD +
Sbjct: 850 HM--RLRSSGDANEIRQQYLPVLWDQTVRRLSVEGKDSV 886
>gi|118384400|ref|XP_001025348.1| ATPase, AAA family protein [Tetrahymena thermophila]
gi|89307115|gb|EAS05103.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
Length = 1242
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 159/467 (34%), Positives = 239/467 (51%), Gaps = 58/467 (12%)
Query: 334 RKGQNIQQSSL--TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQ 391
+K QN Q++S+ WT KY P+ N+ VGN+ +K+L WL +W + + K+
Sbjct: 629 KKKQN-QENSIHSLWTHKYAPQELNDCVGNEAQIKKLENWLVNWENVVVHKQKVQGNWKE 687
Query: 392 NDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNAN 451
N S +A ++SG PG+GKT+ +L+ Q IE NASD R N N
Sbjct: 688 NPGS--RACLISGPPGIGKTSTVRLLAQKYNMNIIEWNASDVR--------------NKN 731
Query: 452 SIKELVS----NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPII 507
+I+ +++ N L+ + S +++++MDEVDGMS+GD GG L+ IK +K PI
Sbjct: 732 AIETIINPLKDNTVLNFKHEVSSQ-RSIILMDEVDGMSSGDIGGNQALMKIIKETKNPIF 790
Query: 508 CICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567
C+CNDRYSQKL+SL + C D+RF KP K +IAKRL+++ EGL+ LE LA+ VN
Sbjct: 791 CVCNDRYSQKLRSLASICFDVRFYKPNKGQIAKRLLEVCRKEGLKSELNHLEFLAESVNN 850
Query: 568 DIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGF------NGGKL 621
DIR A+N LQ S I + + Q L S KD+ +S +A + + N K+
Sbjct: 851 DIRQALNLLQMQSKKSKDISFKSLVQGLSSFKKDDQVS-MSAFEVKYSNLEQNIRNAAKI 909
Query: 622 RM-----------DERIDLSMSDPDLVPLLIQENYIN-YRPSSAGRDEVKRLSLIARAAE 669
M +++DL D +LVP+LI ENY++ ++ R V+ L IA A
Sbjct: 910 LMTKVEFDRKKQISQKVDLFFLDYELVPMLIHENYLSTFQSKEYNRTSVQELERIADATC 969
Query: 670 SISDGDIFNVQIRRNQQWQLSQSSS-LASCIIPAALMHGQRETLEQGERNFNRFGGWLGK 728
++++ D+ IR W L Q+ L S +P + + + LGK
Sbjct: 970 AMAESDLLQDSIRSGGNWSLLQNVGFLTSVYVPQQVCSKC--------NTYPQMTQHLGK 1021
Query: 729 NSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFS----LLLKQL 771
S+ K RL+ L LA S R ++ DY + L+L QL
Sbjct: 1022 FSSQRKTSRLIRQLRM-QLAQNISG-NRQAVQFDYINPLMELILYQL 1066
>gi|268559586|ref|XP_002637784.1| C. briggsae CBR-RFC-1 protein [Caenorhabditis briggsae]
Length = 825
Score = 222 bits (566), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 151/444 (34%), Positives = 225/444 (50%), Gaps = 48/444 (10%)
Query: 344 LTWTEKYRPKTPNEIVG---NQQLVKQLHTWLAHWNEKFLDTGTKRNGKK------QNDA 394
L+W +KY+PK E+VG ++ + +L WL W + L G K K D
Sbjct: 271 LSWVDKYKPKRLGELVGQFGDKSPMNKLMEWLNDWAKHNLGEGAKIKKPKPAPWMASQDG 330
Query: 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA--DAKISKGIGGSNANS 452
+ KAA+LSGSPG+GKTT A + CQ LG + +E+NASD R K +AKI + G ++
Sbjct: 331 TPFKAALLSGSPGVGKTTCAYMACQQLGLKLVEMNASDVRNKKHLEAKIGELSG---SHQ 387
Query: 453 IKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICN 511
I+E + + H VLIMDEVDGMS DR GI++LI IK SKIPIICICN
Sbjct: 388 IEEFFGVKKCVPQDNSKVH--HVLIMDEVDGMSGNEDRAGISELIQIIKESKIPIICICN 445
Query: 512 DRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571
DR K++SL NYC DLRF KPR + I R+M I + E L++ + L+E+ + D+R
Sbjct: 446 DRMHTKIRSLANYCYDLRFPKPRVEMIRSRMMTICSQEKLKITKEDLDEIIELSGHDVRQ 505
Query: 572 AINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSM 631
I LQ S S + KD PF A +L + + E+ ++
Sbjct: 506 TIYNLQMRSKS----------SNAKVNKKDLSWGPFEAARRLL---DSRTTLMEKQEMFF 552
Query: 632 SDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQ 691
D ++PL +QENY+N + + ++ + + +A++ IS GDI + QIR W+L
Sbjct: 553 VDYGIMPLFVQENYLNMK--NEKHKPLEAIRGLRKASDLISLGDIVDRQIRGGGSWKLLN 610
Query: 692 SSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRK 751
S+ S +PA G + + R R L D + + +++
Sbjct: 611 EQSMLSAALPAMATGGHLKAIFSSPRGLERIPV-----------LERRRDFYNNSVSA-- 657
Query: 752 SKLGRDTLRLDYFSLLLKQLTEPL 775
G + DY +L +++T+PL
Sbjct: 658 ---GTHSFATDYAPMLRQKITKPL 678
>gi|339238049|ref|XP_003380579.1| ATPase, AAA family [Trichinella spiralis]
gi|316976507|gb|EFV59792.1| ATPase, AAA family [Trichinella spiralis]
Length = 774
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 193/635 (30%), Positives = 282/635 (44%), Gaps = 142/635 (22%)
Query: 144 VKKTESPL--KSSGRGRGGRGA----SGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEV 197
VK+T P SS R G+ SG P+ G R F +R+ P G +E+
Sbjct: 105 VKQTSKPATPSSSAEKRKGKDENEKLSGRPSFGYQR---------FLQREGPRALGTREI 155
Query: 198 PEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKS 257
P+GA +C GLTFV+SG L++++RE+ + LI+++GGRVTG+ I+G
Sbjct: 156 PKGAENCFQGLTFVLSGILETVDREDVKLLIQKYGGRVTGA-----------SKISGTPK 204
Query: 258 TKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSA 317
KAK + D I S +K + A+ ++V V PK Q I
Sbjct: 205 KKAKV----------MIDEI--SSDVKLDSTADGGQAVMWVDKYKPKSIKQVI---GQHG 249
Query: 318 PKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE 377
PK+ + ++ L W L HWN
Sbjct: 250 PKSCLNKL------------------LNW-------------------------LRHWNH 266
Query: 378 KFLD-----TGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432
D + KR+ +D + KAA+LSG PG+GKTT A+L CQ LG +E+NASD
Sbjct: 267 YHGDGQRKKSVDKRSSHATDDGAQFKAALLSGPPGIGKTTTAQLCCQELGIPYLELNASD 326
Query: 433 SRGK--ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DR 489
SR K + S+ I + + + SN+ + S VLIMDEVDGMS DR
Sbjct: 327 SRNKKLIEEHFSESIKSRSVDQYFRVNSNDG-TERRSSSTFFDHVLIMDEVDGMSGNEDR 385
Query: 490 GGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAE 549
G+ +LI IK ++ LM +A E
Sbjct: 386 AGVQELIDLIKRTR------------------------------------SALMTVAYKE 409
Query: 550 GLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTA 609
GL++ AL++L + N DIR ++ L ++ I +D RQ L + KD + F +
Sbjct: 410 GLKIPPQALDQLIEGANHDIRQVLHHLSLLAAQNRGIDFDQARQAALQAKKDTTQNIFES 469
Query: 610 VDKLFGFNGG--KLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARA 667
LF ++ G K D+R++L SD VPL +QENY+N P A D+++++ L + A
Sbjct: 470 TRLLFKYSDGSQKSSFDDRMELFFSDYSAVPLFVQENYLNCVPKDA-VDQLQKMELFSDA 528
Query: 668 AESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLG 727
AE I+ GDI + QIR W L + S +P L+ G QG+ F W G
Sbjct: 529 AELIALGDIVDRQIRTLSNWSLLTVQGMFSTALPCELLKG----FMQGQI---AFPAWFG 581
Query: 728 KNSTMGKNLRLLEDLHFH---HLASRKSKLGRDTL 759
KNS K R+L+ L H H+++ L D L
Sbjct: 582 KNSKYSKLKRILQQLSTHMTLHISATSDDLNVDYL 616
>gi|322705232|gb|EFY96819.1| putative replication factor C protein [Metarhizium anisopliae ARSEF
23]
Length = 1030
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 144/448 (32%), Positives = 229/448 (51%), Gaps = 43/448 (9%)
Query: 347 TEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSP 406
T KY P + I GN+ V+++ TWL +W K +R G + E+A I+SG P
Sbjct: 455 TSKYAPTQLSHICGNKAQVEKIQTWLRNW-PKAKKYNFQRRG--ADGLGGERAIIISGPP 511
Query: 407 GMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL---- 462
G+GKTTAA L ++ G+ +E NASD R K + N + ++++N +L
Sbjct: 512 GIGKTTAAHLAAKLEGYDVLESNASDVRSKKLVE----------NGVSDVMNNTSLLGYF 561
Query: 463 ---SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLK 519
++D +K K VL+MDEVDGMSAGDRGG+ L K +++P+I ICN+R K+K
Sbjct: 562 AGDGKSVDAAKK-KIVLVMDEVDGMSAGDRGGVGALAKFCKKTEVPLILICNERRLPKMK 620
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ D+RF +P ++ R+M I + EGL++ ++ L + N DIR IN +
Sbjct: 621 PFDHVAFDIRFNRPTVDQVRSRIMTICHREGLKLPPPVVDALIEGSNKDIRQIINMISAA 680
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPD 635
L + + +D+ + + K + P+ KL G K ++++I+L +D +
Sbjct: 681 KLDQTTMNFDEGKAMTKAWEKHVILKPWDICQKLLGSGLFAPASKATLNDKIELYFNDHE 740
Query: 636 LVPLLIQENYINYRPSSAG-------RDEVKRLSLIARAAESISDGDIFNVQIRRNQQ-W 687
L+IQENY+ +P + +++K L L +AAESISDGD+ + I QQ W
Sbjct: 741 FSFLMIQENYLRTKPMALNGKGYNKREEQLKALELFDQAAESISDGDLVDRMIHGPQQHW 800
Query: 688 QLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHL 747
L + ++ S + PA+ + GQ + F WLG S GK R + ++H H
Sbjct: 801 SLMPTHAVFSTVRPASFISGQLLG--------SNFTSWLGNFSKQGKLGRYVREIHSHMR 852
Query: 748 ASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
+ S + +R Y +L KQL L
Sbjct: 853 LN--SSGDHNEVRQQYLPVLWKQLVNRL 878
>gi|85001193|ref|XP_955315.1| replication factor c-related protein [Theileria annulata strain
Ankara]
gi|65303461|emb|CAI75839.1| replication factor c-related protein, putative [Theileria annulata]
Length = 961
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 183/588 (31%), Positives = 284/588 (48%), Gaps = 97/588 (16%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI-------AGAKS 257
+ G FV +G + S++R EA +K+ GG V +VS TNYL+ E + +G K
Sbjct: 347 IEGKKFVFTGEM-SIDRLEATFRVKKLGGIVVSAVSGVTNYLVYGEKLEDGRPYQSGVKY 405
Query: 258 TKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSA 317
KA EL + + L + + L Q+ + +V+ TS+
Sbjct: 406 KKALELNS----KKNLNIQLLNEQQFLQLLQSNADSTVD------------------TSS 443
Query: 318 PKAPIERMKTVASPAKRKGQN----IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLA 373
+ ++ KG+N +++ + +KY+PK +++GN + +++L WL
Sbjct: 444 TVENTDNTSSIVEDVGNKGKNSVDGVEKDGMMLFDKYKPKGLVDVIGNPRQIERLKDWLK 503
Query: 374 HWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDS 433
H++ K KAA+LSG PG+GKTT AKLV Q + IE NASD
Sbjct: 504 HFS-------------KDKAKDEFKAALLSGPPGIGKTTCAKLVGQFYNYHVIEFNASDQ 550
Query: 434 RGKADA-KISKGIGGS-NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG 491
R K +IS + G+ N+ S ++ S N + KT+LI+DEVDGMS GD+GG
Sbjct: 551 RTKNSIERISPLVTGTLTLNTFGTPSSTDSNSVN-HVDLNVKTLLILDEVDGMSTGDKGG 609
Query: 492 IADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGL 551
+ + I I+K PII ICNDR SQK+ +L N C DLRF P KR+ +I E +
Sbjct: 610 LQAISDLIDITKCPIILICNDRLSQKMSALSNKCLDLRFTSPPIDLYMKRMNEICKLEKI 669
Query: 552 EVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVD 611
+V E L EL + NGD+R A+N LQ+ +L+ ++ + I ++ S ++ F +
Sbjct: 670 QVTENLLLELYHKSNGDLRYALNYLQFYNLNTNIA--NSINKKDESHFQN----LFDNCN 723
Query: 612 KLFGFNGGKLRMDERI----DLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARA 667
K+F K+ +ERI DL +D L+ L++QENY Y ++ + +LSLI
Sbjct: 724 KIFHL--AKMPFNERINKVNDLFFTDYSLMSLMLQENYFKY---TSNVTLLSKLSLIYVY 778
Query: 668 AESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLG 727
GDI N + R ++ S S+ +E L F WLG
Sbjct: 779 ------GDIVNTVMAR-----INNSGSVL------------KEKLS--------FPQWLG 807
Query: 728 KNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
K ST KN RLL D+ +L + S G + + Y ++L + + + L
Sbjct: 808 KFSTTNKNKRLLGDIS-RNLCRKTSLYGYNLVTDGYLNILYQIMMKKL 854
>gi|322695637|gb|EFY87442.1| putative replication factor C protein [Metarhizium acridum CQMa
102]
Length = 1062
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 144/448 (32%), Positives = 227/448 (50%), Gaps = 43/448 (9%)
Query: 347 TEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSP 406
T KY P + I GN+ V+++ TWL +W K +R G + E+A I+SG P
Sbjct: 489 TSKYAPTQLSHICGNKAQVERIQTWLRNW-PKAKKYNFQRRG--ADGLGGERAIIISGPP 545
Query: 407 GMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL---- 462
G+GKTTAA L ++ G+ +E NASD R K + N + ++++N +L
Sbjct: 546 GIGKTTAAHLAAKLEGYDVLESNASDVRSKKLVE----------NGVSDVMNNTSLLGYF 595
Query: 463 ---SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLK 519
+D +K K VL+MDEVDGMSAGDRGG+ L K +++P+I ICN+R K+K
Sbjct: 596 AGDGKTVDAAKK-KIVLVMDEVDGMSAGDRGGVGALAKFCKKTEVPLILICNERRLPKMK 654
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ D+RF +P ++ R+M I + EGL++ ++ L + N DIR IN +
Sbjct: 655 PFDHVAFDIRFNRPTVDQVRSRIMTICHREGLKLPPAVVDALIEGSNKDIRQIINMISTA 714
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFN----GGKLRMDERIDLSMSDPD 635
L + + YD+ + + K + P+ K+ G K ++++I+L +D +
Sbjct: 715 KLDQTTMNYDEGKAMTKAWEKHVVLKPWDICQKMLGSGLFAPASKATLNDKIELYFNDHE 774
Query: 636 LVPLLIQENYINYRPSSAG-------RDEVKRLSLIARAAESISDGDIFNVQIRRNQQ-W 687
L+IQENY+ +P + +++K L L +AAESISDGD+ + I QQ W
Sbjct: 775 FSFLMIQENYLRTKPMALNGKGYNKREEQLKALELFDQAAESISDGDLVDRMIHGPQQHW 834
Query: 688 QLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHL 747
L + ++ S + PA+ + GQ + F WLG S GK R + ++H H
Sbjct: 835 SLMPTHAVFSTVRPASFVSGQLLG--------SNFTSWLGNFSKQGKLGRYIREIHSH-- 884
Query: 748 ASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
KS + +R Y +L K L L
Sbjct: 885 MRLKSSGDHNEVRQQYLPVLWKYLVNRL 912
>gi|397614905|gb|EJK63089.1| hypothetical protein THAOC_16273, partial [Thalassiosira oceanica]
Length = 1055
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 158/477 (33%), Positives = 222/477 (46%), Gaps = 70/477 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNG-KKQNDASAEKAAILSG 404
W +KY P + +I+GN VK+L WL W F+D+ K N + +KAA+LSG
Sbjct: 583 WADKYSPSSSRDILGNGDSVKKLKRWLNEWEGTFMDSKRKVGSLTNPNPNAPKKAALLSG 642
Query: 405 SPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG-IGGSNANSIKELVSNEALS 463
PG+GKTT A LV + G +E+NASD+R K + G + GS+ + + + +
Sbjct: 643 PPGIGKTTTATLVARETGRDVLELNASDARSKKALTEALGDVTGSHVICFDKSKAKVSDN 702
Query: 464 ANMDRS--------------------------------------------KHPKTVLIMD 479
DRS KH K V+IMD
Sbjct: 703 ERRDRSWEMILVGLYSKLYCWKCDLTLLLCCRTCTTILRNAVWRNVKGNDKHQKRVIIMD 762
Query: 480 EVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIA 539
EVDGM AGDR G+A+LI IK SK+PIICICNDR SQK+KSL YC DLR+R+P K IA
Sbjct: 763 EVDGMGAGDRSGMAELIQMIKKSKVPIICICNDRQSQKVKSLAQYCLDLRYRRPTKGVIA 822
Query: 540 KRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSA 599
KR M I EG+EV + A E +A+ DIR +N LQ M + K + +R + +
Sbjct: 823 KRAMHIGKLEGMEVEQNAAESIAESCGNDIRQVLNALQ-MDRQSDINKDEVLRVSMFDAC 881
Query: 600 KDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
+ I + +R D D L+ L++ +NY R +V
Sbjct: 882 R--TICEGAKNLAGADARAANASLMKRTDAFFVDYALMGLMVHQNYPKVLTGMYNRAKVN 939
Query: 660 --------RLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASC-IIPAALMHGQR 709
L+ + A E++SD + +R +Q W L L C I+ + H
Sbjct: 940 DDDDEEEAALNAVYDATEAMSDFGLVEEHLRGGDQNWSL-----LPLCSILAVKVGHHAG 994
Query: 710 ETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDL--HFHHLASRKSKLGRDTLRLDYF 764
F GWLGKNS+ GK +RLL++L H +H S + LR++Y
Sbjct: 995 GPNGGFVGGNPEFAGWLGKNSSRGKRMRLLQELRRHLNHRVSADAP----ELRMNYL 1047
>gi|61680955|pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 145/423 (34%), Positives = 214/423 (50%), Gaps = 34/423 (8%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQ---NDASAEKAAIL 402
WT KY P ++ GN+ V +L WLA+W +K+N K + + +AA+L
Sbjct: 29 WTVKYAPTNLQQVCGNKGSVMKLKNWLANWEN------SKKNSFKHAGKDGSGVFRAAML 82
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL 462
G PG+GKTTAA LV Q LG+ +E NASD R K N + + NE
Sbjct: 83 YGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEE- 141
Query: 463 SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ N++ KH V+IMDEVDGMS GDRGG+ L + + P+I ICN+R K++
Sbjct: 142 AQNLN-GKH--FVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFD 198
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
C D++FR+P I RLM IA E +++ ++ L GDIR IN L +S +
Sbjct: 199 RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTT 258
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF------GFNGGKLRMDERIDLSMSDPDL 636
I +++I + + K+ + PF K+ ++++I L D D
Sbjct: 259 TKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDF 318
Query: 637 VPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSL 695
PL+IQENY++ RPS + L +A AA IS GDI +IR ++Q W L ++
Sbjct: 319 TPLMIQENYLSTRPSVLKPGQ-SHLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAV 377
Query: 696 ASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG 755
S + PA+ + G G NF WLG+NS K RLL+++H+H ++LG
Sbjct: 378 LSSVYPASKVAGHMA----GRINFT---AWLGQNSKSAKYYRLLQEIHYH------TRLG 424
Query: 756 RDT 758
T
Sbjct: 425 TST 427
>gi|403362369|gb|EJY80911.1| BRCT domain containing protein [Oxytricha trifallax]
Length = 993
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 140/453 (30%), Positives = 233/453 (51%), Gaps = 55/453 (12%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL---------DTGTKRNGKKQNDASA 396
WT+KY P++ +++VGN+ ++ WL W + + G R +
Sbjct: 354 WTDKYAPQSFSDLVGNKSVIVNFREWLVDWEDVVIRGQKKDIQPKGGWGRAAYQDLPKIN 413
Query: 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
+A ++SG PG+GKT++ +++ + LG+ +E NASD+R K SI+ L
Sbjct: 414 ARACLISGPPGIGKTSSVRIIAKELGYNLMEFNASDNRSKK--------------SIENL 459
Query: 457 VSNEALSANMDR---------SKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPII 507
+ N ++D+ +K KT+++MDEVDG+SA DRGG+ LI IK + IPI+
Sbjct: 460 LQNMTTCKSIDKYQQYNLMSKNKKEKTLILMDEVDGVSANDRGGLGALILIIKKTLIPIV 519
Query: 508 CICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIAL-EELADRVN 566
C+ ND +KL SL+N+C DL+F KP +++ KR+ IA E L+++ + + ++ D
Sbjct: 520 CVANDSKHRKLVSLLNHCYDLKFAKPSNEDMLKRIKFIAEKENLKIDRLDIYTQIFDMSG 579
Query: 567 GDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDED--ISPFTAVDKLFG---FNGGKL 621
DIR IN +Q + + I D+ + KD ++ FTA K F+ ++
Sbjct: 580 QDIRQVINMIQMQKTTSNQITKIDMNAKQHQVQKDWQLMLNAFTASQKFLNRKEFH--QM 637
Query: 622 RMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQI 681
++++L DPDL+P+ IQENY+ + +++ RL A A+ IS GD N QI
Sbjct: 638 SFKDKVNLFFIDPDLMPMFIQENYLTAFGQLSKPEDLMRL---ADVADYISMGDQINNQI 694
Query: 682 RRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLED 741
R++Q W L + + S + L G + +F W GK ST K+ RL+ +
Sbjct: 695 RQHQDWALLPNLGIMSSVAVGNLCFGFVP--------YAKFPEWFGKFSTTRKSTRLIRE 746
Query: 742 LHF---HHLASRKSKLGRDTLRLDYFSLLLKQL 771
+ HHL + K + + + L F L++K L
Sbjct: 747 IRERCGHHLYTVKKAIQFEHVTL-IFELVIKLL 778
Score = 42.7 bits (99), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 38/63 (60%)
Query: 185 ERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTN 244
E++ + +KE A LGG ++ ++G + + R++ E+ IK++GGR+ V+K +
Sbjct: 90 EKRMKTYDDDKEFMNEARGPLGGGSYAVTGVFEDITRDKLEEFIKKNGGRLVTQVTKVCD 149
Query: 245 YLL 247
Y++
Sbjct: 150 YVI 152
>gi|403358750|gb|EJY79030.1| BRCT domain containing protein [Oxytricha trifallax]
Length = 993
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 140/453 (30%), Positives = 233/453 (51%), Gaps = 55/453 (12%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL---------DTGTKRNGKKQNDASA 396
WT+KY P++ +++VGN+ ++ WL W + + G R +
Sbjct: 354 WTDKYAPQSFSDLVGNKSVIVNFREWLVDWEDVVIRGQKKDIQPKGGWGRAAYQDLPKIN 413
Query: 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
+A ++SG PG+GKT++ +++ + LG+ +E NASD+R K SI+ L
Sbjct: 414 ARACLISGPPGIGKTSSVRIIAKELGYNLMEFNASDNRSKK--------------SIENL 459
Query: 457 VSNEALSANMDR---------SKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPII 507
+ N ++D+ +K KT+++MDEVDG+SA DRGG+ LI IK + IPI+
Sbjct: 460 LQNMTTCKSIDKYQQYNLMSKNKKEKTLILMDEVDGVSANDRGGLGALILIIKKTLIPIV 519
Query: 508 CICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIAL-EELADRVN 566
C+ ND +KL SL+N+C DL+F KP +++ KR+ IA E L+++ + + ++ D
Sbjct: 520 CVANDSKHRKLVSLLNHCYDLKFAKPSNEDMLKRIKFIAEKENLKIDRLDIYTQIFDMSG 579
Query: 567 GDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDED--ISPFTAVDKLFG---FNGGKL 621
DIR IN +Q + + I D+ + KD ++ FTA K F+ ++
Sbjct: 580 QDIRQVINMIQMQKTTSNQITKIDMNAKQHQVQKDWQLMLNAFTASQKFLNRKEFH--QM 637
Query: 622 RMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQI 681
++++L DPDL+P+ IQENY+ + +++ RL A A+ IS GD N QI
Sbjct: 638 SFKDKVNLFFIDPDLMPMFIQENYLTAFGQLSKPEDLMRL---ADVADYISMGDQINNQI 694
Query: 682 RRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLED 741
R++Q W L + + S + L G + +F W GK ST K+ RL+ +
Sbjct: 695 RQHQDWALLPNLGIMSSVAVGNLCFGFVP--------YAKFPEWFGKFSTTRKSTRLIRE 746
Query: 742 LHF---HHLASRKSKLGRDTLRLDYFSLLLKQL 771
+ HHL + K + + + L F L++K L
Sbjct: 747 IRERCGHHLYTVKKAIQFEHVTL-IFELVIKLL 778
Score = 42.7 bits (99), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 38/63 (60%)
Query: 185 ERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTN 244
E++ + +KE A LGG ++ ++G + + R++ E+ IK++GGR+ V+K +
Sbjct: 90 EKRMKTYDDDKEFMNEARGPLGGGSYAVTGVFEDITRDKLEEFIKKNGGRLVTQVTKVCD 149
Query: 245 YLL 247
Y++
Sbjct: 150 YVI 152
>gi|300706363|ref|XP_002995454.1| hypothetical protein NCER_101643 [Nosema ceranae BRL01]
gi|239604566|gb|EEQ81783.1| hypothetical protein NCER_101643 [Nosema ceranae BRL01]
Length = 598
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 172/580 (29%), Positives = 283/580 (48%), Gaps = 84/580 (14%)
Query: 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKE 262
D TFV +G L +L+RE A+ + GGRVT + SKKT++L+ + K KA++
Sbjct: 3 DFFKNKTFVFTGEL-TLDREYAKSKVILLGGRVTIAPSKKTDFLVVGAEPGPVKLKKAQD 61
Query: 263 LGTPFLTED----GLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAP 318
L + E L + +++ L Q + E + S EA P
Sbjct: 62 LNIKIIYEQEFTTNLNECLQSDDISNVLNQNNGGMTTEA-----DQISSDFDEASVFDTP 116
Query: 319 KAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK 378
+ I++ K + + + + + W+EKYRPK ++++GN ++ L ++
Sbjct: 117 EESIQKSKDINAIIEPEKATTYTN--MWSEKYRPKKRSDLIGNSSVIDSLADFML----- 169
Query: 379 FLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKAD 438
GK +N + A+LSGSPG+GKTT+ ++C+ LG +E NASD R K+
Sbjct: 170 ---------GKTKN-----RGALLSGSPGIGKTTSVHVLCKELGLDLVEFNASDVRNKSL 215
Query: 439 AKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIAS 498
+K +++++ +S + K K +++MDEVDGM++ DRGG+ +L
Sbjct: 216 L----------VKKVKGIINSQGISKGL---KLKKKIVLMDEVDGMTS-DRGGLVELNNL 261
Query: 499 IKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIAL 558
IK S IPI+CICNDR + K+++L N C DL+FRKP ++I R+ I E + + +
Sbjct: 262 IKESIIPIVCICNDRNNIKIRTLANNCLDLKFRKPDSRQIVPRIKVILKHENKVLGDNII 321
Query: 559 EELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDI--SPFTAVDKLFGF 616
E+ +GDIR +N +Q + ++ D I L+SS + I S F + F
Sbjct: 322 NEVISLSHGDIRYILNNIQRICVN------DKININLMSSLTKKTILKSVFEIASECF-- 373
Query: 617 NGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDI 676
GK ++E+ DL D L+PL I ENY+ + ++ L +++ESIS GD+
Sbjct: 374 -HGK-SINEKTDLYFEDYSLIPLFIAENYMKLKFAN--------LIDFYKSSESISSGDV 423
Query: 677 FNVQIR-RNQQWQLSQSSSLASCIIPA---ALMHGQRETLEQGERNFNRFGGWLGKNSTM 732
IR Q+W L + ++P AL G F WLG+NS
Sbjct: 424 VEKLIRGSTQEWSLLPLHGFFTVVLPTKDKALFKGI------------DFPSWLGQNSRY 471
Query: 733 GKNLRLLEDLHFHHLASRKSKLGRDTLRL-DYFSLLLKQL 771
K+ R+++++ H S+ G + RL D + + L+ L
Sbjct: 472 LKHQRIIKEVKRH--VSKYVNSGLENFRLYDSYIIFLEIL 509
>gi|401410256|ref|XP_003884576.1| putative replication factor c subunit [Neospora caninum Liverpool]
gi|325118994|emb|CBZ54546.1| putative replication factor c subunit [Neospora caninum Liverpool]
Length = 1128
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 186/596 (31%), Positives = 269/596 (45%), Gaps = 126/596 (21%)
Query: 200 GAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTK 259
G+ G TFV +G LDS+ R+EA + +GGR T +VS KT+YL +AG+
Sbjct: 441 GSKSSFAGKTFVFTGVLDSMGRDEAVAAVVGNGGRCTSAVSGKTDYL-----VAGS---- 491
Query: 260 AKELGTPFLTEDGLFDMIRASKPMKAL-----AQAESKKSV-----EKVAASLP---KKS 306
L EDG D+ SK KAL A+ K S+ ++ A LP +K
Sbjct: 492 --------LLEDGR-DVTTGSKYRKALQLMQDGSAKQKASLKILHEQEFLAMLPESTQKK 542
Query: 307 PQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLT-----WTEKYRPKTPNEIVGN 361
P+ +EA+ + + IE K V K G+ QQS T W EKYRPK ++ VGN
Sbjct: 543 PK-MEARKSPEEASRIESEKAVKCDQKADGKAGQQSDETSQNVLWAEKYRPKRADDFVGN 601
Query: 362 QQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASA-------------EKAAILSGSPGM 408
++ ++ L WLA W + L G K+ ++ A + +AA+LSG PG+
Sbjct: 602 REHLRTLQAWLADWADVCLH-GKKKKPPPRSFAPSFSPYGFAPTINLNARAALLSGPPGI 660
Query: 409 GKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI--GGSNANSIKELVSNEALSANM 466
GKTTAA+L + G+ +E NASD+R KA + + GG +S + NEA
Sbjct: 661 GKTTAARLAAEAAGYDVLEYNASDARNKAHIEDIGNMTSGGLTLHSFLDQ-KNEASHGTP 719
Query: 467 DR--------------SKHPK-TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICN 511
+ SK P ++MDEVDG+S GDRGG ++ I+ SK PIICICN
Sbjct: 720 EEIQTAAFAFLFPGRNSKRPMGACVLMDEVDGLSGGDRGGAQAIVKLIETSKCPIICICN 779
Query: 512 DRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571
DR K++++ + C DLRF P + R+ IA AE L + A+ L + GD+R
Sbjct: 780 DRMHPKVRTIASKCLDLRFHPPHMAALRSRVEDIATAEDLALEPQAIGYLCESAGGDLRQ 839
Query: 572 AINQLQYMSLSLSVIKYD------DIRQRLLSSAKDEDI--SPFTAVDKLF-GFNGGKLR 622
+N LQ ++ + D + + KD+ + PF +L KL
Sbjct: 840 ILNSLQMLAYETRESQKDGSGKSREENTDFSTGLKDDQVMHGPFECCKQLLDAHQASKLS 899
Query: 623 MDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIR 682
+++D SD DL+PLLIQ
Sbjct: 900 RRQKLDKFFSDYDLIPLLIQ---------------------------------------- 919
Query: 683 RNQQWQLSQSSSLASCI-IPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLR 737
NQQW + C+ +PA + QG +F WLG+NST K+ R
Sbjct: 920 -NQQWGMLPDIGFLCCVSLPAKVEKA------QGFLGRVQFPSWLGRNSTQTKHKR 968
>gi|71027899|ref|XP_763593.1| replication factor C large subunit [Theileria parva strain Muguga]
gi|68350546|gb|EAN31310.1| replication factor C large subunit, putative [Theileria parva]
Length = 1084
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 180/591 (30%), Positives = 286/591 (48%), Gaps = 83/591 (14%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI-------AGAKS 257
+ G FV +G + ++R EA +K+ GG V +VS T+YL+ + + +G K
Sbjct: 375 IEGKKFVFTGEM-GIDRLEATLRVKKLGGIVVSAVSGVTDYLVYGDRLEDGRPYQSGLKY 433
Query: 258 TKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSA 317
KA EL + + ++ L + E+ L +N++ +T
Sbjct: 434 KKAIELNN------------KKKRNIQLLNE-------EQFLQLLQSNIDENVKTDNT-L 473
Query: 318 PKAPIERMKTVASPAKRKGQN-IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN 376
IE T+ + N I++ + EKYRPK +E++GN + +++L WL H+
Sbjct: 474 ENIVIED-NTIKDDGNTENINSIEKECMVLFEKYRPKRFSELIGNPRSIQRLKDWLQHF- 531
Query: 377 EKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436
K GK + KAA+LSG PG+GKTT AKLV Q + IE+NASD R K
Sbjct: 532 -------PKDKGKDE-----FKAALLSGPPGIGKTTCAKLVGQFFNYHVIELNASDQRSK 579
Query: 437 ADAK-----ISKGIGGSNANSIKELVSNEALSANMDRSKH----PKTVLIMDEVDGMSAG 487
+ ++ + + S + +N + + S KT+LI+DEVDGMS+G
Sbjct: 580 NSIENIFPLVTGTLTLNTIYSASSITNNTSFKNKNNNSNVNGLNAKTLLILDEVDGMSSG 639
Query: 488 DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
D+GGI + I I+K PII ICNDR+SQK+ +L N C DLRF P R+ +I
Sbjct: 640 DKGGIQAISELIDITKCPIILICNDRFSQKMSTLSNKCLDLRFNPPPIDLYINRINKICK 699
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDI--S 605
E ++V E L EL + +GD+R +N LQ+ + + ++ + KDE +
Sbjct: 700 LENIKVTENLLLELYHKSSGDLRYTLNYLQFYNSNTNITP--------CINKKDESHFQN 751
Query: 606 PFTAVDKLFGFNGGKLRMDERID----LSMSDPDLVPLLIQENYINYRPSSAGRDEVKRL 661
F +K+F KL E+I+ L +D L+PL++QENY Y +
Sbjct: 752 LFDNCNKVFHL--SKLSFTEKINKVNELFFTDFSLMPLMLQENYFKY---------TSNV 800
Query: 662 SLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNR 721
L+++ + + DI N + + Q + L S + IIP+ ++ L++
Sbjct: 801 VLLSKLSLTYVYADIANKILTQTQVYSLLPDLSSLTAIIPSIEINKCVSVLKERL----S 856
Query: 722 FGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLT 772
F WLGK ST KN RLL+++ +L ++ S G + L +D F +L Q T
Sbjct: 857 FPQWLGKFSTTNKNKRLLKEIS-TNLCNKTSLYGYN-LIIDGFLNILYQTT 905
>gi|390371027|dbj|GAB64908.1| replication factor C subunit 1 [Plasmodium cynomolgi strain B]
Length = 876
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 152/419 (36%), Positives = 206/419 (49%), Gaps = 71/419 (16%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA-------GAKS 257
L FV++G + R+E + IK HGG V +VS KT+YL+ E + G K
Sbjct: 226 FHNLKFVLTGVFKNFSRDELQSKIKEHGGSVMSAVSSKTHYLIHGEYLEDGRMYNEGRKY 285
Query: 258 TKAKELG------TPFLTEDGLFDMIRASK-----------------PMKALAQA----- 289
KA EL L E+ L M+ K P + Q+
Sbjct: 286 QKAFELQKMSKSIIKILNEEELLQMLPQEKDQTPKGGDAGHGKDDHDPFEKSQQSDFTKI 345
Query: 290 --ESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWT 347
ES S + S KS E K+T AP ++ K + + W
Sbjct: 346 RSESGNSGRGNSGSGSYKSAVQSEKKNTPNSGAPADQSKIL--------------NQLWV 391
Query: 348 EKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE----KAAILS 403
EKYRPK NE+VGN Q V +L WLA W++ + G K+ K E + A+LS
Sbjct: 392 EKYRPKNLNELVGNNQNVLKLKNWLASWDDVCI-KGLKKQVTKTFRGVYENVNARCALLS 450
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADA-KISK-GIGGSNANSIKELVSNEA 461
GS G+GKTT AK+V + G+ IE NASD R KA KIS+ GG + SIK
Sbjct: 451 GSAGIGKTTTAKIVAESSGYNVIEFNASDERNKAAVEKISEMATGGYSIASIKS------ 504
Query: 462 LSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
K KT +IMDEVDGMS+GD+GG A ++ I+ +K PIICICNDR + K+++L
Sbjct: 505 -------KKLTKTCIIMDEVDGMSSGDKGGSAAILKMIEKTKCPIICICNDRQNSKMRTL 557
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
N C DL+F P K + KRL++I E + + ALE L + NGD+R +N LQ +S
Sbjct: 558 ANKCYDLKFTTPNKNSVVKRLLEICKQEDIMMEPNALELLWESTNGDMRQMLNALQLLS 616
>gi|341885495|gb|EGT41430.1| hypothetical protein CAEBREN_31074 [Caenorhabditis brenneri]
Length = 511
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 148/387 (38%), Positives = 207/387 (53%), Gaps = 34/387 (8%)
Query: 393 DASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK--ADAKISKGIGGSNA 450
D + KAA+LSG+ G+GKTT A + + +E+NASD R K +AKI + G +
Sbjct: 3 DGTPFKAALLSGNSGVGKTTCATWLVNNSALKLVEMNASDVRNKKHLEAKIGELTG---S 59
Query: 451 NSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICI 509
+ I+E + D H VLIMDEVDGMS DR GI++LI IK SKIPIICI
Sbjct: 60 HQIEEFFGVKKSVPQDDSKVHH--VLIMDEVDGMSGNQDRAGISELIQIIKESKIPIICI 117
Query: 510 CNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDI 569
CNDR K++SL NYC DLRF KPR + I R+M I + E +++++ L+EL + D+
Sbjct: 118 CNDRMHPKIRSLANYCYDLRFSKPRVETIRSRMMTICSQEKVKISKEELDELIELSGHDV 177
Query: 570 RMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDL 629
R I LQ S S S K + KD+ PF A +L + + E+ ++
Sbjct: 178 RQTIYNLQMRSKS-SGAKV---------AKKDQAWGPFDAARRLL---DSRTTLLEKQEM 224
Query: 630 SMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
D ++PL +QENY+N + E R + +AA+ IS GD+ + QIR W+L
Sbjct: 225 FFVDYGIMPLFVQENYLNMKNDKHTPQEAIR--GMRKAADLISLGDLVDRQIRGGGSWKL 282
Query: 690 SQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLA 748
S+ S +PA G + + Q F WLGKNST GK RLL+ L H HL
Sbjct: 283 LNEQSMLSAALPAMATGGHLKAMIQ-------FPSWLGKNSTAGKKKRLLQQLVQHTHL- 334
Query: 749 SRKSKLGRDTLRLDYFSLLLKQLTEPL 775
K G + DY +L +++T+PL
Sbjct: 335 --KVSAGTHSFATDYAPMLRQKITKPL 359
>gi|302923420|ref|XP_003053672.1| hypothetical protein NECHADRAFT_30719 [Nectria haematococca mpVI
77-13-4]
gi|256734613|gb|EEU47959.1| hypothetical protein NECHADRAFT_30719 [Nectria haematococca mpVI
77-13-4]
Length = 1042
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 144/451 (31%), Positives = 229/451 (50%), Gaps = 47/451 (10%)
Query: 347 TEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSP 406
T KY P + I GN+ V+++ WL +W K +R G + E+A I+SG P
Sbjct: 461 TSKYAPTQLSHICGNKAQVEKIQNWLRNW-PKSKKYNFQRRG--ADGMGGERAIIISGPP 517
Query: 407 GMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL---- 462
G+GKTTAA L ++ G+ +E NASD+R K + + + ++++N +L
Sbjct: 518 GIGKTTAAHLAAKLEGYDVLESNASDTRSKKLVE----------SGVSDVMNNTSLLGYF 567
Query: 463 ---SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLK 519
++D +K K VLIMDEVDGMSAGDRGG+ L + ++IP+I ICN+R K+K
Sbjct: 568 AGDGKDVDTTKK-KIVLIMDEVDGMSAGDRGGVGALAKYCRKTEIPLILICNERKLPKMK 626
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ D+RF +P ++ R+M I + EGL++ ++ L + N DIR IN +
Sbjct: 627 PFDHVAFDIRFNRPTVDQVRSRIMTICHREGLKLPPAVVDALIEGSNKDIRQIINMISTA 686
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGG------KLRMDERIDLSMSD 633
L + + +D + + K + P+ K+ GG K ++++I+L +D
Sbjct: 687 KLDQTSMDFDQSKAMSKAWEKHVILKPWDICQKMLA--GGLFAPASKSTLNDKIELYFND 744
Query: 634 PDLVPLLIQENYINYRPSSA-GRDEVKR------LSLIARAAESISDGDIFNVQIRRNQQ 686
+ L+IQENY+ +P + G+ +R L L AAESISDGD+ + I +QQ
Sbjct: 745 HEFSFLMIQENYLRTKPMALNGKGYTQREYNLKALELFDNAAESISDGDLVDRMIHGSQQ 804
Query: 687 -WQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH 745
W L + ++ S + PA+ + GQ + F WLG NS GK R + ++H H
Sbjct: 805 HWSLMPTHAVFSTVRPASFIAGQLMG--------SNFTSWLGNNSKSGKLGRYIREIHSH 856
Query: 746 HLASRKSKLGRDTLRLDYFSLLLKQLTEPLR 776
+S +R Y +L QL L+
Sbjct: 857 --MRLRSSGDHHEVRQQYLPVLWDQLVNRLQ 885
>gi|74145153|dbj|BAE22230.1| unnamed protein product [Mus musculus]
Length = 428
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 171/300 (57%), Gaps = 12/300 (4%)
Query: 479 DEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQE 537
DEVDGM+ DRGGI +LI IK +KIPIIC+CNDR K++SLV+YC DLRF++PR ++
Sbjct: 1 DEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQ 60
Query: 538 IAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLS 597
I ++ IA EGL++ A+ E+ N D+R ++ L + YD +
Sbjct: 61 IKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQR 120
Query: 598 SAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGR 655
+ KD + PF K+F G + + ++ DL D + PL +QENY++ +P +AG
Sbjct: 121 AKKDIRLGPFDVTRKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGG 180
Query: 656 DEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQG 715
D K L L++RAA+SI DGD+ + QIR Q W L + ++ + ++P LM G
Sbjct: 181 DMKKHLMLLSRAADSICDGDLVDNQIRSKQNWSLLPTQAIYASVLPGELMRGYMT----- 235
Query: 716 ERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F F WLGK+S+ GK+ R+++DL H S ++ + T+ +DY S + L PL
Sbjct: 236 --QFPSFPSWLGKHSSTGKHDRIVQDLSLH--MSLRTYSSKRTVNMDYLSHIRDALVRPL 291
>gi|71755451|ref|XP_828640.1| replication factor C subunit 1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70834026|gb|EAN79528.1| replication factor C, subunit 1, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261334525|emb|CBH17519.1| replication factor C large subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 587
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 148/450 (32%), Positives = 230/450 (51%), Gaps = 47/450 (10%)
Query: 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSG 404
+W EKY+PKT ++ K L W E+F + ++S + A+LSG
Sbjct: 14 SWAEKYKPKTIAQMCYPVTANK-----LKQWMEEF-----------EANSSKMRGALLSG 57
Query: 405 SPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA 464
PG+GKTT+ +V LG +E NASD R + + ++ +V+N S
Sbjct: 58 PPGVGKTTSVYVVASELGRVVVEYNASDFRSRKSLR----------ENVSTVVNNRTFSN 107
Query: 465 NMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
S + VL+MDEVDG D GG+ ++I IK + +PIIC CNDR+ KL+SL+N+
Sbjct: 108 T--SSSYANIVLLMDEVDGC---DIGGVGEVIQMIKNTNVPIICTCNDRWHPKLRSLLNH 162
Query: 525 CSDLRFRKPRKQEIAKRLM-QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
D+R +P +A L ++ EG+ +++ L+++ R DIR +N LQ ++
Sbjct: 163 VEDIRAGRPPCNIVANYLCDKVLAREGISLSKQLLQDIIQRSGSDIRSMLNNLQMWCINQ 222
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLI 641
+ ++ + + L SAKD D+ F A + G + G+ R E + + + DLV + +
Sbjct: 223 TSLQQKKLAECALQSAKDGDVGLFEAAEVFLLQGSSRGRPRSIEELQSTFYNSDLVDMFV 282
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIP 701
QENY++++P RD + +A AA SIS D+ + W +S+S L S IIP
Sbjct: 283 QENYLHFKPED--RD---WMDAVAEAASSISLSDLAQRIMFFENNWSVSRSHVLLSSIIP 337
Query: 702 AALMHGQRETLEQGERN-FNR-----FGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG 755
AL G ET G++ F+R F WLG+NS GKN RLL L F + K G
Sbjct: 338 CALTRGHYETFVTGQQAIFDRQRPVKFPSWLGQNSAAGKNKRLLRCLTFQAMGHSKGISG 397
Query: 756 -RDTLRLDYFSLLLK-QLTEPLRVLPKDEL 783
++ + LDY + +LT+PL KD +
Sbjct: 398 TQEDVLLDYIPRAWESRLTDPLAQRGKDAI 427
>gi|407425478|gb|EKF39450.1| hypothetical protein MOQ_000322 [Trypanosoma cruzi marinkellei]
Length = 582
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 145/442 (32%), Positives = 224/442 (50%), Gaps = 48/442 (10%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKY+PKT ++ K L W E F D+GT + +AA+LSG
Sbjct: 14 WAEKYKPKTIAQMCYPSSANK-----LKAWIEAF-DSGTAK----------MRAALLSGP 57
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKTT+ +V + LG +E NAS R G S + ++N N
Sbjct: 58 PGVGKTTSVYVVARELGRVVVEYNASHFRS----------GKSLREHVTVAINNNIF--N 105
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
M+ S + K++L+MDEVDG D GG+ ++I K +KIPI+C CNDR++QKL+SL+NY
Sbjct: 106 MNASSYAKSILLMDEVDGC---DIGGVKEVIEMTKTTKIPIVCTCNDRWNQKLRSLMNYV 162
Query: 526 SDLRFRKPRKQEIAKRLM-QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
D R +P +A L ++ EG+ +++ L+++ R DIR +N LQ L+ +
Sbjct: 163 EDFRVSRPPCNIVANYLCDKVLAREGISLSKQLLQDIIQRSGSDIRSMLNNLQMWCLNRT 222
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
++ + + SAKD D+ F A + G + GK R E + + + DLV L +Q
Sbjct: 223 SLEQKALAACAVQSAKDGDVGLFDAAEMFLLQGTSRGKPRSIEELQTAFYNADLVDLFVQ 282
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPA 702
ENYI++ P +E + +A AA+SIS D + Q W +S++ S I P
Sbjct: 283 ENYIHFNP-----EERDWMDAVADAADSISLADALQRIMYYEQNWSVSRAHVQLSSIAPC 337
Query: 703 ALMHGQRETLEQGERNFN------RFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKL-- 754
A+ G E+ G++ F +F WLG+NS+ KN R++ L A +
Sbjct: 338 AITRGHYESFLSGQQVFFDRQRPVKFPTWLGQNSSANKNKRIIRCLTLQASAPSTGGISG 397
Query: 755 GRDTLRLDYFSLLLK-QLTEPL 775
++ + LDY L + LT+PL
Sbjct: 398 NQEDVLLDYIPLGWEGALTQPL 419
>gi|71662470|ref|XP_818241.1| replication factor C, subunit 1 [Trypanosoma cruzi strain CL
Brener]
gi|70883481|gb|EAN96390.1| replication factor C, subunit 1, putative [Trypanosoma cruzi]
Length = 582
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 145/442 (32%), Positives = 224/442 (50%), Gaps = 48/442 (10%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKY+PKT ++ K L W E F D+G+ R +AA+LSG
Sbjct: 14 WAEKYKPKTIAQMCYPSSANK-----LKAWIETF-DSGSSR----------MRAALLSGP 57
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKTT+ +V + LG +E NAS R G S + ++N N
Sbjct: 58 PGVGKTTSVYVVARELGRIVVEYNASHFRS----------GKSLREHVTVSINNNTF--N 105
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
M+ S + K++L+MDEVDG D GG+ ++I K +KIPI+C CNDR++QKL+ L+NY
Sbjct: 106 MNASSYAKSILLMDEVDGC---DIGGVKEIIEMTKTTKIPIVCTCNDRWNQKLRPLLNYV 162
Query: 526 SDLRFRKPRKQEIAKRLM-QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
D R +P +A L ++ EG+ +++ L+++ R DIR +N LQ L+ +
Sbjct: 163 EDFRVSRPPCNIVANYLCDKVLAREGISLSKQLLQDIIQRSGSDIRSMLNNLQMWCLNRT 222
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
++ + + SAKD D+ F A + G + GK R E + + + DLV L +Q
Sbjct: 223 SLEQKALAACAVQSAKDGDVGLFDAAEMFLLQGTSRGKPRSIEELQTAFYNSDLVDLFVQ 282
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPA 702
ENYI++ P RD + +A AA+SIS D + Q W +S++ S I P
Sbjct: 283 ENYIHFNPED--RD---WMEAVADAADSISLADALQRIMYYEQNWSVSRAHVQLSSIAPC 337
Query: 703 ALMHGQRETLEQGERNFN------RFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKL-- 754
A+ G E+ G++ F +F WLG+NS+ KN R++ L L+ +
Sbjct: 338 AITRGHYESFLSGQQVFFDRQRPVKFPTWLGQNSSANKNKRIIRCLTLQALSPSTGGISG 397
Query: 755 GRDTLRLDYFSLLLK-QLTEPL 775
++ + LDY L + LT+PL
Sbjct: 398 NQEDVLLDYIPLGWEAALTQPL 419
>gi|407860390|gb|EKG07394.1| hypothetical protein TCSYLVIO_001482 [Trypanosoma cruzi]
Length = 582
Score = 208 bits (530), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 144/442 (32%), Positives = 223/442 (50%), Gaps = 48/442 (10%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKY+PKT ++ K L W E F D+G+ R +AA+LSG
Sbjct: 14 WAEKYKPKTIAQMCYPSSANK-----LKAWIETF-DSGSSR----------MRAALLSGP 57
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKTT+ +V + LG +E NAS R G S + ++N + N
Sbjct: 58 PGVGKTTSVYVVARELGRIVVEYNASHFRS----------GKSLREHVTVSINNNTFNKN 107
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
S + K++L+MDEVDG D GG+ ++I K +K PI+C CNDR++QKL+ L+NY
Sbjct: 108 A--SSYAKSILLMDEVDGC---DIGGVKEIIEMTKTTKTPIVCTCNDRWNQKLRPLLNYV 162
Query: 526 SDLRFRKPRKQEIAKRLM-QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
D R +P +A L ++ EG+ +++ L+++ R DIR +N LQ L+ +
Sbjct: 163 EDFRVSRPPCNIVANYLCDKVLAREGISLSKQLLQDIIQRSGSDIRSMLNNLQMWCLNRT 222
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
++ + + SAKDED+ F A + G + GK R E + + + DLV L +Q
Sbjct: 223 SLEQKALAACAVQSAKDEDVGLFDAAEMFLLQGTSRGKPRSIEELQTAFYNSDLVDLFVQ 282
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPA 702
ENYI++ P RD + +A AA+SIS D + Q W +S++ S I P
Sbjct: 283 ENYIHFNPED--RD---WMEAVADAADSISLADALQRIMYYEQNWSVSRAHVQLSSIAPC 337
Query: 703 ALMHGQRETLEQGERNFN------RFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKL-- 754
A+ G E+ G++ F +F WLG+NS+ KN R++ L L+ +
Sbjct: 338 AITRGHYESFLSGQQVFFDRQRPVKFPTWLGQNSSANKNKRIIRCLTLQALSPSTGGISG 397
Query: 755 GRDTLRLDYFSLLLK-QLTEPL 775
++ + LDY L + LT+PL
Sbjct: 398 NQEDVLLDYIPLGWEAALTQPL 419
>gi|342185694|emb|CCC95179.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 589
Score = 208 bits (530), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 144/448 (32%), Positives = 226/448 (50%), Gaps = 47/448 (10%)
Query: 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSG 404
+W EKY+P+T ++ K L W E+F Q S + +LSG
Sbjct: 13 SWAEKYKPRTIAQMCYPTYANK-----LRLWVEEF-----------QAGNSRTRGVLLSG 56
Query: 405 SPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA 464
PG+GKTT+ +V LG IE NASD R + + ++ +V+N S
Sbjct: 57 PPGVGKTTSVYVVAAELGLAVIEYNASDFRSRKSLR----------ENVSSIVNNRTFSN 106
Query: 465 NMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
S + +L+MDEVDG D GG+ ++I IK + IPI+C CNDR++ KL+SL+N+
Sbjct: 107 T--SSSYADALLLMDEVDGC---DTGGVGEVIQMIKNTTIPIVCTCNDRWNMKLRSLLNH 161
Query: 525 CSDLRFRKPRKQEIAKRLM-QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
D+R +P +A L ++ EG+ +++ L+++ R DIR +N LQ ++
Sbjct: 162 VEDIRVGRPPCNIVANYLCDKVLAREGISLSKQLLQDIIQRSGSDIRSMLNNLQMWCINE 221
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLI 641
+ + + + L SAKD D+ F A + G + GK R E + + + DL+ + +
Sbjct: 222 TTLLQKKLAECALQSAKDSDVGLFEAAEIFLLQGSSRGKPRSIEELQATYYNSDLIDMFV 281
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIP 701
QENYI++ P RD + +A AA SIS D+ + Q W +S++ L S I+P
Sbjct: 282 QENYIHFNPED--RD---WMDAVADAASSISTADLAQRIMFFEQNWSVSRAHVLLSSILP 336
Query: 702 AALMHGQRETLEQGERN-FNR-----FGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG 755
A + G E+ G++ F+R F WLG NSTMGKN RLL L K G
Sbjct: 337 CASIRGHYESFLSGQQAVFDRQRPVKFPSWLGHNSTMGKNKRLLRCLAIQATNHDKGISG 396
Query: 756 -RDTLRLDYFSLLLK-QLTEPLRVLPKD 781
++ + LDY L + ++ +P+ + KD
Sbjct: 397 SQEDVLLDYMPRLWEAKIAQPMVNMGKD 424
>gi|340058742|emb|CCC53103.1| putative replication factor C, subunit 1 [Trypanosoma vivax Y486]
Length = 582
Score = 208 bits (530), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 143/441 (32%), Positives = 219/441 (49%), Gaps = 47/441 (10%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKY+P+T ++ K L W E+F D GT S + A+LSG
Sbjct: 11 WAEKYKPRTIAQMCYPATANK-----LKLWVEEF-DAGT----------SKMRGALLSGP 54
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKTT+ +V LG +E NASD R + + + ++V+N N
Sbjct: 55 PGVGKTTSVYVVAAELGRVVVEYNASDFRSRKSLR----------EHVSDVVNNRTF--N 102
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
+ + +L+MDEVDG D GG+ ++I IK + +PI+C CNDR+ KL+SL+N+
Sbjct: 103 NTSTSYSNIILLMDEVDGC---DIGGVGEVIQMIKTTTVPIVCTCNDRWHTKLRSLLNHV 159
Query: 526 SDLRFRKPRKQEIAKRLM-QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
D+R +P +A + +I EG+ +++ L+++ R DIR +N LQ L +
Sbjct: 160 EDIRVSRPPCNIVANYICDKILAREGVSLSKQLLQDVIQRSGSDIRSMLNNLQMWCLGRN 219
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
++ + L SAKD D+ F A + G + G R E + + + DLV L +Q
Sbjct: 220 TLEPKALAACALQSAKDGDVGLFEAAEVFLLQGTSRGTPRTIEELQATYYNSDLVDLFVQ 279
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPA 702
ENY+++ P RD ++ +A+AA SIS D + Q W +S++ L SCI P
Sbjct: 280 ENYLHFNPED--RDWMES---VAQAASSISVADTLQRIMYMEQNWSVSRAFVLQSCIAPC 334
Query: 703 ALMHGQRETLEQGERNFN------RFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG- 755
A G E+ G++ F +F WLG NS+ KN RLL L F K G
Sbjct: 335 AFTRGHYESFLSGQQVFFDRQRPVKFPSWLGHNSSANKNRRLLRCLTFQSTNPTKGVSGN 394
Query: 756 RDTLRLDYFSLLLK-QLTEPL 775
++ + LDY L + +T PL
Sbjct: 395 QEDVLLDYIPLGWEGSVTRPL 415
>gi|398016007|ref|XP_003861192.1| replication factor C, subunit 1, putative [Leishmania donovani]
gi|322499417|emb|CBZ34490.1| replication factor C, subunit 1, putative [Leishmania donovani]
Length = 660
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 135/425 (31%), Positives = 210/425 (49%), Gaps = 38/425 (8%)
Query: 325 MKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGT 384
M V++ A + S W +KY+P++ E+ +L WL E F G+
Sbjct: 1 MAAVSTSAAGTANPVPSRSELWADKYKPRSIAEMC-YPVCANKLKAWL----ETFTPIGS 55
Query: 385 KRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG 444
+ K+ +LSGSPG+GKTT +V LG +E NASD R + K
Sbjct: 56 PGDDPKK-----PHGVLLSGSPGVGKTTTVYVVAHELGRTVVEYNASDFRSRKSLK---- 106
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI 504
++ +L+SN A SA+ + + +L+MDEVDG D GG+ ++I +K ++I
Sbjct: 107 ------ENVSDLISNRAFSASA--TSYTNVILLMDEVDGC---DIGGVGEVIEMLKSTRI 155
Query: 505 PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLM-QIANAEGLEVNEIALEELAD 563
PI+C CNDR+ KL+SL+NY D+RF P +A L ++ EG+ +++ L+++
Sbjct: 156 PILCTCNDRWHPKLRSLLNYVEDMRFSHPPCNIVANYLCDRVLAREGISLSKPLLQDIIK 215
Query: 564 RVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKL 621
DIR +N LQ LS + ++ + + S KD D F A + G + G+
Sbjct: 216 NSGSDIRNMLNNLQLWCLSRTSLEQRQLAECAAQSTKDSDAGLFDAAEYFLLQGTSRGER 275
Query: 622 RMDERIDLSMSDPDLVPLLIQENYINYRPSSA-GRDEVKRLSLIARAAESISDGDIFNVQ 680
+ + DLV + +QENY++Y P GRD ++ +S +AA SIS D
Sbjct: 276 HSIAEMQACYYNADLVDMFVQENYLHYNPQPVDGRDWMEAVS---QAATSISRSDAAQSI 332
Query: 681 IRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFN------RFGGWLGKNSTMGK 734
+ Q W +S+ L+S I P G+ ET G++ F +F WLG NS+ K
Sbjct: 333 MYYQQNWSVSRFHVLSSSIAPCVYTRGKYETFMTGQQKFFDMQRPVKFPTWLGHNSSANK 392
Query: 735 NLRLL 739
N RLL
Sbjct: 393 NRRLL 397
>gi|339898374|ref|XP_001465928.2| putative replication factor C, subunit 1 [Leishmania infantum
JPCM5]
gi|321399537|emb|CAM68360.2| putative replication factor C, subunit 1 [Leishmania infantum
JPCM5]
Length = 660
Score = 205 bits (522), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 134/425 (31%), Positives = 209/425 (49%), Gaps = 38/425 (8%)
Query: 325 MKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGT 384
M V++ A + S W +KY+P++ E+ +L WL E F G+
Sbjct: 1 MAAVSTSATGTANPVPSRSELWADKYKPRSIAEMC-YPVCANKLKAWL----ETFTPIGS 55
Query: 385 KRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG 444
+ K+ +LSGSPG+GKTT +V LG +E NASD R + K
Sbjct: 56 PGDDPKK-----PHGVLLSGSPGVGKTTTVYVVAHELGRTVVEYNASDFRSRKSLK---- 106
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI 504
++ +L+SN A S + + + +L+MDEVDG D GG+ ++I +K ++I
Sbjct: 107 ------ENVSDLISNRAFSVSA--TSYTNVILLMDEVDGC---DIGGVGEVIEMLKSTRI 155
Query: 505 PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLM-QIANAEGLEVNEIALEELAD 563
PI+C CNDR+ KL+SL+NY D+RF P +A L ++ EG+ +++ L+++
Sbjct: 156 PILCTCNDRWHPKLRSLLNYVEDMRFSHPPCNIVANYLCDRVLAREGISLSKPLLQDIIK 215
Query: 564 RVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKL 621
DIR +N LQ LS + ++ + + S KD D F A + G + G+
Sbjct: 216 NSGSDIRNMLNNLQLWCLSRTSLEQRQLAECAAQSTKDSDAGLFDAAEYFLLQGTSRGER 275
Query: 622 RMDERIDLSMSDPDLVPLLIQENYINYRPSSA-GRDEVKRLSLIARAAESISDGDIFNVQ 680
+ + DLV + +QENY++Y P GRD ++ +S +AA SIS D
Sbjct: 276 HSIAEMQACYYNADLVDMFVQENYLHYNPQPVDGRDWMEAVS---QAATSISRSDAAQSI 332
Query: 681 IRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFN------RFGGWLGKNSTMGK 734
+ Q W +S+ L+S I P G+ ET G++ F +F WLG NS+ K
Sbjct: 333 MYYQQNWSVSRFHVLSSSIAPCVYTRGKYETFMTGQQKFFDMQRPVKFPTWLGHNSSANK 392
Query: 735 NLRLL 739
N RLL
Sbjct: 393 NRRLL 397
>gi|154416257|ref|XP_001581151.1| transcription factor [Trichomonas vaginalis G3]
gi|121915376|gb|EAY20165.1| transcription factor, putative [Trichomonas vaginalis G3]
Length = 687
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 162/537 (30%), Positives = 260/537 (48%), Gaps = 68/537 (12%)
Query: 178 GGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTG 237
GF +G+ +PP G+K +P G P+CL G TFV +GT+ SL+RE+ +DLI ++GG+VT
Sbjct: 24 AGF-QYGKGDNPPLYGQKVIPVGKPNCLLGNTFVPTGTMVSLKREQVKDLITKYGGKVTS 82
Query: 238 SVSKKTNYLL--CDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSV 295
S+S KT+ ++ C E + K +E P + EDGLF +I S P K + K
Sbjct: 83 SISGKTDCVVVGCIE-VGPKKIQTCREKNIPTIDEDGLFYLIARSDPEK---NKDFIKKF 138
Query: 296 EKVAASLPKKSPQNIEAKSTSAPKAPI-ERMKTVASPAKRKGQNIQQSSLTWTEKYRPKT 354
E A + ++ + EA+ + I E +K ++K QN + L + EKYRP
Sbjct: 139 ENQQAGVIEEIEEKKEAQEEIKHEETIKENIK------EKKEQN--KKYLNFAEKYRPSD 190
Query: 355 PNEIVGNQQLVKQLHTWLAHW-NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTA 413
+ +G QL +L+ + N K K A++SG G GKTT
Sbjct: 191 LKDFIGAVGAKNQLREYLSKFPNVK------------------NKIALISGDQGCGKTTL 232
Query: 414 AKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK 473
A L+ LGF E+NASD R K + I + + + I E + L K
Sbjct: 233 AHLMASSLGFHCNELNASDVRTKGE--IQNFLDVTTSGCI-ETSKKKGLG---------K 280
Query: 474 TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKP 533
LI DE+DGM AGDRGGI+ + + K +KIPIICI + +K L+ C + K
Sbjct: 281 ECLIFDEIDGMGAGDRGGISAIASLAKTTKIPIICITTGKSDKKFDPLLKICESINIPKI 340
Query: 534 RKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQ 593
+ + +L+ +A +EG+ +++ +++ +A+R NGD+R A+N L++ S S
Sbjct: 341 ERGLMCNKLITVAKSEGINISQKSIQSIAERANGDLRYALNSLEFWSAS----------D 390
Query: 594 RLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSA 653
AK D AVD +++ + + +D D +PL +Q N + P
Sbjct: 391 NGFEKAKSVD----NAVDGTRFILSMHTSFEDKFNCAFAD-DAMPLYVQYNL--HAPQGN 443
Query: 654 GRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRE 710
+ A A ++ G+I +++ Q + LS S+ SC++P + + E
Sbjct: 444 RESALDY----ADALDATCFGEIVERELKETQNYSLSTPSNYLSCVLPTMISKNKME 496
>gi|401422850|ref|XP_003875912.1| putative replication factor C, subunit 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492152|emb|CBZ27426.1| putative replication factor C, subunit 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 659
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 135/425 (31%), Positives = 208/425 (48%), Gaps = 38/425 (8%)
Query: 325 MKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGT 384
M V++ A + S W +KY+P++ E+ +L WL E F G+
Sbjct: 1 MPVVSASAVGMANPVPSRSELWADKYKPRSIAEMC-YPVCANKLKAWL----EGFTPIGS 55
Query: 385 KRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG 444
+D +LSGSPG+GKTT +V LG +E NASD R + K
Sbjct: 56 P-----GDDPKKPHGVLLSGSPGVGKTTTVYVVAHELGCTVVEYNASDFRSRKSLK---- 106
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI 504
++ +LV+N A SA + + +L+MDEVDG D GG+ ++I +K + I
Sbjct: 107 ------ENVSDLVNNRAFSARA--TSYTNVILLMDEVDGC---DIGGVGEVIEMLKSTSI 155
Query: 505 PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLM-QIANAEGLEVNEIALEELAD 563
PI+C CNDR+ KL+SL+NY D+RF P +A L ++ EG+ +++ L+++
Sbjct: 156 PILCTCNDRWHPKLRSLLNYVEDMRFSHPPCNIVANYLCDRVLAREGISLSKPLLQDIIK 215
Query: 564 RVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKL 621
+ DIR +N LQ LS + ++ + + S KD D F A + G + G+
Sbjct: 216 KSGSDIRSMLNNLQLWCLSRTSLEQRQLAECAAQSTKDSDAGLFDAAEYFLLQGTSRGER 275
Query: 622 RMDERIDLSMSDPDLVPLLIQENYINYRPSSA-GRDEVKRLSLIARAAESISDGDIFNVQ 680
+ + DLV + +QENY++Y P GRD ++ +S +AA SIS D
Sbjct: 276 HSIVEMQACYYNADLVDMFVQENYLHYNPQPVDGRDWMEAVS---QAATSISRSDAAQRI 332
Query: 681 IRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFN------RFGGWLGKNSTMGK 734
+ Q W +S+ L+S I P G+ ET G++ F +F WLG NS+ K
Sbjct: 333 MYYQQNWSVSRFHVLSSSIAPCVYTRGKYETFMTGQQKFFDMQRPVKFPTWLGHNSSANK 392
Query: 735 NLRLL 739
N RLL
Sbjct: 393 NRRLL 397
>gi|123479162|ref|XP_001322740.1| differentiation specific element binding protein [Trichomonas
vaginalis G3]
gi|121905592|gb|EAY10517.1| differentiation specific element binding protein, putative
[Trichomonas vaginalis G3]
Length = 694
Score = 202 bits (514), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 166/577 (28%), Positives = 268/577 (46%), Gaps = 92/577 (15%)
Query: 189 PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLL- 247
PP+KGE VP P L G+ SGTL R E DLI GG + ++ + L
Sbjct: 57 PPNKGEIPVPSPKPGSLTGIRICASGTLPHFTRAEVRDLITACGGTLQAAIKDNVDIFLR 116
Query: 248 -CDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA--SKPMKALAQAESKKSVEKVAASLPK 304
C +++ K A + G + E+GL M+ A ++ + +K E+V S K
Sbjct: 117 GC-LNVSQDKLNSALKKGISVIDEEGLLAMLAAVGCTNIEGFEAEKDQKHTEEVPQSKSK 175
Query: 305 KSPQNI----EAKSTSAPKAPIERMKTVASPAKRKGQNI---QQSSLT--WTEKYRPKTP 355
+ + E K P+ + +T+A G N ++SS T +EKYRP+
Sbjct: 176 GQQEEVIKEVEGKRVQKPEVKQPKQQTLA----FGGINFNDKKESSATNLISEKYRPQNR 231
Query: 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAK 415
N+++GN+ L++++ WL ++ KQ+ +KA ++SG PG+GKT+ A
Sbjct: 232 NDLIGNKDLIEKIDNWLITFS-------------KQD----KKAVLISGPPGIGKTSTAL 274
Query: 416 LVCQMLGFQAIEVNASDSRGKADAK-ISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474
L+ + G+ +E NASD R KA + I+K + N ++ N + +H
Sbjct: 275 LLAKSRGYHVVEYNASDVRNKAAIEDIAKTL--FNGKTLYSFTQQ-----NTNNKQH--- 324
Query: 475 VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPR 534
+I DE+DGMS GDRGG+ L I+ S PI CICNDR S+KLK ++ Y D++F P
Sbjct: 325 AIIFDEIDGMSTGDRGGVQALAQFIEKSTFPIFCICNDRQSEKLKPILKYVLDIQFSAPD 384
Query: 535 KQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQR 594
K+E+ +R+ +I+ EG++++ L D+ GD+R A+N LQ S +
Sbjct: 385 KKEMIQRVFEISKQEGIKIDRKNLFAAIDKSGGDMRSALNALQLWSSN------------ 432
Query: 595 LLSSAKDEDISPFTAVDKLFGFNGGKLRMDE-----RIDLSMSD----PDLVPLLIQENY 645
+A ++ + +D GF K E RI L M D PD + ++ N
Sbjct: 433 -CGNAHEKTADEYATMD---GFEAAKKLCTEKDFEKRISLFMVDYYKCPDFIHDVLTFN- 487
Query: 646 INYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALM 705
+ A A +S+SDGD + ++Q + L + C+ P A+
Sbjct: 488 -------------GNMKQYADALDSMSDGDTVQTILNQDQNYDLLIPMGIIGCVTPPAVA 534
Query: 706 HGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDL 742
+ + N RF + S M KN RL+++
Sbjct: 535 PVKVTS------NM-RFPECYLRASKMNKNNRLMQEF 564
>gi|157870127|ref|XP_001683614.1| putative replication factor C, subunit 1 [Leishmania major strain
Friedlin]
gi|68126680|emb|CAJ04631.1| putative replication factor C, subunit 1 [Leishmania major strain
Friedlin]
Length = 661
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 129/404 (31%), Positives = 199/404 (49%), Gaps = 38/404 (9%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W +KY+P + E+ +L WL E F + +D +LSGS
Sbjct: 22 WADKYKPHSIAEMC-YPVCANKLKAWL----EAFTPIASP-----SDDPKKPHGVLLSGS 71
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKTT +V LG +E NASD R + K ++ +L++N A SA
Sbjct: 72 PGVGKTTTVYVVAHELGRTVVEYNASDFRSRKSLK----------ENVSDLINNHAFSAR 121
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
+ + +L+MDEVDG D GG+ ++I +K ++IPI+C CNDR+ KL+SL+NY
Sbjct: 122 A--TSYTNVILLMDEVDGC---DIGGVGEVIEMLKSTRIPILCTCNDRWHPKLRSLLNYV 176
Query: 526 SDLRFRKPRKQEIAKRLM-QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
D+RF P +A L ++ EG+ +++ L+++ DIR +N LQ LS +
Sbjct: 177 EDMRFSHPPCTIVANYLCDRVLAREGISLSKPLLQDIIKNSGSDIRNMLNNLQLWCLSRT 236
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
++ + + S KD D F A + G + G+ + + DLV + +Q
Sbjct: 237 SLEQRQLAECAAQSTKDSDAGLFGAAEYFLLQGTSRGERHSMAEMQACYYNADLVDMFVQ 296
Query: 643 ENYINYRPSSA-GRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIP 701
ENY++Y P GRD ++ +S +AA SIS D + Q W +S+ L+S I P
Sbjct: 297 ENYLHYNPQPVDGRDWMEAVS---QAATSISRSDAAQSIMYYQQNWSVSRFHVLSSSIAP 353
Query: 702 AALMHGQRETLEQGERNFN------RFGGWLGKNSTMGKNLRLL 739
G+ ET G++ F +F WLG NS+ KN RLL
Sbjct: 354 CVYTRGKYETFMTGQQKFFDMQRPVKFPTWLGHNSSANKNRRLL 397
>gi|195179879|ref|XP_002029125.1| GL13172 [Drosophila persimilis]
gi|194110576|gb|EDW32619.1| GL13172 [Drosophila persimilis]
Length = 386
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/301 (37%), Positives = 167/301 (55%), Gaps = 16/301 (5%)
Query: 478 MDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQ 536
MDEVDGM+ DRGGI +LIA IK S +PIIC+CNDR K++SLVNYC DLRF++PR +
Sbjct: 1 MDEVDGMAGNEDRGGIQELIALIKDSSVPIICMCNDRNHPKIRSLVNYCFDLRFQRPRLE 60
Query: 537 EIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLL 596
+I ++M I E ++++ +EE+ N DIR +IN + MS + + L
Sbjct: 61 QIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHISLMSAGEDIPTQSQAKVELK 120
Query: 597 SSAKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGR 655
+++KD + P+ V K+F K + ++ DL D L PL +Q+NY+ P +
Sbjct: 121 TASKDLKLGPWEVVRKVFTAEEHKRMSFADKCDLFFHDYSLAPLFVQQNYLQVTPQGNKK 180
Query: 656 DEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQG 715
D L +A A+++S GD+ + +IR N W L + + S ++P M G G
Sbjct: 181 D---ILGKVAATADALSIGDMIDKRIRANSAWSLLPTQAFFSSVLPGEKMAGHF----TG 233
Query: 716 ERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLG-RDTLRLDYFSLLLKQLTEP 774
+ N F GWLGKNS K RL ++LH H +R G R ++RLDY LL + P
Sbjct: 234 QIN---FPGWLGKNSRTTKRARLAQELHDH---TRSCTSGSRLSVRLDYAPFLLDNIARP 287
Query: 775 L 775
L
Sbjct: 288 L 288
>gi|154338281|ref|XP_001565365.1| putative replication factor C, subunit 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062414|emb|CAM42275.1| putative replication factor C, subunit 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 664
Score = 196 bits (498), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 129/404 (31%), Positives = 200/404 (49%), Gaps = 38/404 (9%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W +KY+P++ E+ +L WL E F G+ +D +LSGS
Sbjct: 23 WADKYKPRSIAEMC-YPVCANKLKAWL----ENFTPIGSP-----GDDPKKPHGVLLSGS 72
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKTT +V + LG +E NASD R + + ++ +L++N A SA
Sbjct: 73 PGVGKTTTVYVVARELGRTVVEYNASDFRSRKSLR----------ENVSDLINNRAFSAR 122
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
+ + VL+MDEVDG D GG+ ++I +K ++IPI+C CNDR+ KL+SL+NY
Sbjct: 123 A--TSYTTVVLLMDEVDGC---DIGGVGEVIEMLKSTRIPILCTCNDRWHPKLRSLLNYV 177
Query: 526 SDLRFRKPRKQEIAKRLM-QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
D+RF P +A L ++ EG+ +++ L+++ DIR +N LQ L
Sbjct: 178 EDMRFSHPPCNVVANYLCDRVLAREGISLSKPLLQDIIKTSGSDIRSMLNNLQLWCLRRI 237
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
++ + + S KD D F A + G + G+ + + DLV + +Q
Sbjct: 238 SLEQRQLAECAAQSTKDSDAGLFDAAEYFLLQGTSRGERHSIAEMQARYYNADLVDMFVQ 297
Query: 643 ENYINYRPSSA-GRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIP 701
ENY++Y P GRD ++ +S +AA SIS D + Q W +S+ L+S I P
Sbjct: 298 ENYLHYNPQLVDGRDWMEAVS---QAATSISRADAAQRIMYYEQNWSVSRFHVLSSSIAP 354
Query: 702 AALMHGQRETLEQGERNFN------RFGGWLGKNSTMGKNLRLL 739
G+ ET G++ F +F WLG NS+ KN RLL
Sbjct: 355 CVYTRGKYETFMTGQQKFFDMQRPVKFPTWLGHNSSANKNRRLL 398
>gi|169609112|ref|XP_001797975.1| hypothetical protein SNOG_07642 [Phaeosphaeria nodorum SN15]
gi|160701784|gb|EAT85108.2| hypothetical protein SNOG_07642 [Phaeosphaeria nodorum SN15]
Length = 1019
Score = 192 bits (489), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 178/621 (28%), Positives = 288/621 (46%), Gaps = 112/621 (18%)
Query: 182 NFGERKDPPHKGEK-EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVS 240
N G + P +G ++P G+ CL GL FV +G L R EA++L+KRHGG+VTG+ S
Sbjct: 332 NAGRAEPAPLQGASGDMPSGSDTCLAGLNFVFTGVLKKWGRTEAQELVKRHGGKVTGAPS 391
Query: 241 KKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA---------SKPMKALAQAES 291
KKTNY+ K +LG + EDGL +I SK A + +
Sbjct: 392 KKTNYV------------KIHDLGIQTIEEDGLSMLIEKLTEVGNKGDSKAQAAYKEKQR 439
Query: 292 K--KSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEK 349
K ++++K AA L K+ + + K + A + A+ G + + WT K
Sbjct: 440 KEEENIKKQAAELEKEDKKREKEKKAADVAAGRTTASAATAAAQSDGPAV--DTRLWTTK 497
Query: 350 YRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMG 409
Y P + N+I GN+ V++L WL + K + T K G + + +A +L G PG+G
Sbjct: 498 YAPSSLNQICGNKVTVERLQRWLQKF-PKNVKTNFKLAG--ADGSGVFRAVMLHGPPGIG 554
Query: 410 KTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDR 468
KTTAA LV ++ G+ +E NASD+R K I +G+ G + NS+ + +
Sbjct: 555 KTTAAHLVAKLEGYDIVERNASDTRSK--KLIEEGLRGVLSTNSLHGYFAGDGKKVE--- 609
Query: 469 SKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDL 528
S K VLIMDEVDG+ P++ + ++ +VN S
Sbjct: 610 SAKKKLVLIMDEVDGLKM----------------PAPVVNALIEGSHADIRQVVNMISTA 653
Query: 529 RFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKY 588
+ L++ A + RM+ N +++ ++K
Sbjct: 654 K----------------------------LDQEAMDFDSGKRMSKNWEKHV-----ILKP 680
Query: 589 DDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINY 648
DI Q++L +F + K ++E+I+L +D + PL++QENY+
Sbjct: 681 WDITQKILGGG-------------MFAAS-SKATLNEKIELYFNDHEFSPLMLQENYLGT 726
Query: 649 RPSSA----GRDE-VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPA 702
P A G+++ +K+L L ++AA+SISDGD+ + I QQW L + ++ S + PA
Sbjct: 727 NPMQALNYSGKEQNLKKLELASQAADSISDGDLVDRMIHGSQQQWSLMPTHAVFSFVRPA 786
Query: 703 ALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLD 762
+ + G N RF WLGKNS+ K RL++++ H +S R +R
Sbjct: 787 SFVAGSTAG------NQTRFTSWLGKNSSTNKLSRLVKEIQAH--MRLRSSGDRHEIRQQ 838
Query: 763 YFSLLLKQLTEPLRVLPKDEL 783
Y +L +L + L+ KD +
Sbjct: 839 YIPVLWTELVQKLQKEGKDAV 859
>gi|429964312|gb|ELA46310.1| hypothetical protein VCUG_02198 [Vavraia culicis 'floridensis']
Length = 636
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 165/618 (26%), Positives = 275/618 (44%), Gaps = 151/618 (24%)
Query: 210 FVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLT 269
FV +G L S +RE +L+ GG+VT VS TNYL+ ED K KA+E+G +
Sbjct: 8 FVFTGEL-SKDREYFTNLVLMSGGKVTHQVSGLTNYLVVGEDGGKVKMRKAEEIGCKIIG 66
Query: 270 EDGLFDMIR-------ASKPMKALAQ-----------------------AESKKSVEKVA 299
E+ M+ K M ++A+ ++ +E+
Sbjct: 67 ENEFMRMVNDEGDLTDKEKGMGSVAERGDVAGRKKGMGSGAVGKNLRSKTKNTNDIERTE 126
Query: 300 ASLPKK----SPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTP 355
+ KK + +N A++ P ER + V +P+ G+ + WT KY P+
Sbjct: 127 DRIGKKGEKMNVKNKLARTGELPTKNDERTQGVKTPSLADGK--PHYGMLWTVKYEPRIL 184
Query: 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAK 415
+E++GN+ + +L H+ R G KA ++SG PG+GK+ + K
Sbjct: 185 DEVLGNKTAKDHVLNFLEHY----------RKG---------KALLISGPPGVGKSLSVK 225
Query: 416 LVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTV 475
L C+ ++ E NASD R K+ S +++ V+ +S + V
Sbjct: 226 LACKSTNYEMTEFNASDVRNKS----------SLTERVRQFVNCGCISGR-------RRV 268
Query: 476 LIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRK 535
L+MDE DGM+ GDRGGIA+L+ I+ +++P+ICICND+Y+ ++ LVN C ++ FRK
Sbjct: 269 LVMDECDGMT-GDRGGIAELVQIIRDARMPVICICNDKYA--VRPLVNVCEEVTFRKLET 325
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRL 595
++I R+ I EG +V + + E+ N D+R +N LQ + Y + R
Sbjct: 326 RQILGRVRDIVREEGKDVKDKEIVEVCGMANNDMRYILNCLQ------GSVMYKKVVSRN 379
Query: 596 LSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYI-----NYRP 650
L F V LF G+ R+ E+++ SD +++PL++ ENY+ + P
Sbjct: 380 L----------FDEVLALF----GRGRVGEKMETFFSDYEMMPLMVYENYLRSDMRDREP 425
Query: 651 SS-AGRDEVK---------------------------------------RLSLIARAAES 670
+ AG+ E++ ++ A A++S
Sbjct: 426 GNKAGKAELENAPDNGLEDNECNNAHKHNKRPKNHRINVYELDDNVIRTKMCTYAHASDS 485
Query: 671 ISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNS 730
IS D + ++ N W L +L +IPA + L+ +R F LG S
Sbjct: 486 ISLADTYLRKMGSN-DWSLLNHYALFGALIPA-------QNLKINKR--IEFPKVLGNTS 535
Query: 731 TMGKNLRLLEDLHFHHLA 748
K+ R+++ HFH L+
Sbjct: 536 KSNKHHRVIQTFHFHILS 553
>gi|269860225|ref|XP_002649835.1| replication factor C subunit [Enterocytozoon bieneusi H348]
gi|220066776|gb|EED44248.1| replication factor C subunit [Enterocytozoon bieneusi H348]
Length = 570
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 172/574 (29%), Positives = 275/574 (47%), Gaps = 83/574 (14%)
Query: 206 GGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGT 265
G TFV +G + ++RE A+ I++ G R T ++S KT +L+ D +K KAKELG
Sbjct: 6 GNYTFVFTGIM-KMDREHAQFQIRQLGHRSTSAISGKTTHLIVGNDPGVSKLKKAKELGI 64
Query: 266 PFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERM 325
L E ++ K +++ + E+ + + +SL S I S K
Sbjct: 65 LILNETEFEQLLH--KMQESVKKREASTTELLLDSSL--NSDFGINVTSDDFLKE----- 115
Query: 326 KTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTK 385
+ I +L W EKYRP+T EI+GN + ++ EKFL +
Sbjct: 116 ----THCTFINNTINNDNLPWCEKYRPQTVTEIIGNSGAISEI--------EKFLIGKSV 163
Query: 386 RNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI 445
+NG +++G+PG+GKTTA ++C+ IE NASD R K + +
Sbjct: 164 KNG-----------LLITGTPGLGKTTAVHVLCKKHDILMIEFNASDVRNKKNLE----- 207
Query: 446 GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIP 505
IK +++ ++ N K +++MDEVDGM + D GGI +LI IK++ IP
Sbjct: 208 -----QYIKLKINSHSIFRN-------KRIILMDEVDGMFS-DHGGINELIQIIKMNIIP 254
Query: 506 IICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV 565
IICI NDR K+KSL NYC +++F+KP + RL I AE + + L E+
Sbjct: 255 IICITNDRAHPKIKSLANYCIEVKFKKPVINSLIPRLKSILKAENKSIPDNILFEICRLC 314
Query: 566 NGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDE 625
N D+R IN LQ + S++ IK +I +++S + F +LF KL +++
Sbjct: 315 NQDLRYIINTLQ-KNKSITNIKELNIFTKIISK------NIFEITSELF----SKLTVNQ 363
Query: 626 RIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK---RLSLIARAAESISDGDIFNVQIR 682
+I+L D ++PL + E Y+ G+ ++ + IA A+SIS GDI + +I
Sbjct: 364 KIELYFEDYSMIPLFVYERYLKTEYFEHGQRKLNPYITIDKIAEYADSISFGDIIDHKIH 423
Query: 683 -RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLED 741
++Q + L ++ SC+IP + F LGK S+ RLL +
Sbjct: 424 GQSQNYSLLPYHAIYSCVIPT----------QTSAFGIVAFPQILGKISSSNAFRRLLIE 473
Query: 742 LHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
L S +K+ D Y + +KQ+ + L
Sbjct: 474 L------SLDNKISVDVFT-QYSYICIKQIIQCL 500
>gi|340505325|gb|EGR31667.1| mitochondrial processing peptidase beta, putative [Ichthyophthirius
multifiliis]
Length = 778
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/235 (41%), Positives = 145/235 (61%), Gaps = 19/235 (8%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WT KY P+ + VGN Q +K++ WL +W+ + TK K + ++ KA ++SG
Sbjct: 96 WTHKYSPQYLDSCVGNFQQIKKIELWLQNWHSVVIKKETKGQSKNWKENTSAKACLISGP 155
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+ +L+ + +Q IE NASD R K N +++LV + LS+N
Sbjct: 156 PGIGKTSTVRLLAKKYEYQIIEWNASDVRSK--------------NQLEQLV--KPLSSN 199
Query: 466 M---DRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+++ K +++MDE+DGMS+GD GG L+ IK ++IPI C+CNDRY+QKLKS+
Sbjct: 200 CVLGQSNRNNKAIILMDEIDGMSSGDIGGSQQLLKIIKETQIPIFCVCNDRYNQKLKSIA 259
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
NYC D+RF KP+KQ++A L +I E ++ + + LE LA+ N DIR AIN LQ
Sbjct: 260 NYCYDIRFFKPQKQQVAALLSKICVQEKIKADNLGLELLAENANCDIRQAINYLQ 314
>gi|198412875|ref|XP_002119665.1| PREDICTED: similar to replication factor C large subunit, partial
[Ciona intestinalis]
Length = 447
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 174/304 (57%), Gaps = 12/304 (3%)
Query: 475 VLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKP 533
V++MDEVDGM+ DRGG+ +LI IK +KIPIIC+CNDR + K++SL N+C DLRF++P
Sbjct: 11 VMLMDEVDGMAGNEDRGGMQELIQLIKQTKIPIICMCNDRSTPKMRSLTNHCFDLRFQRP 70
Query: 534 RKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQ 593
R ++I +M I + E L+V+ +++ + N D+R ++ L + S+ + YDD ++
Sbjct: 71 RVEQITGAVMSICHKERLKVDPPSVQAIIRGCNQDVRQVLHNLNMLKASVKSLTYDDAKK 130
Query: 594 RLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSA 653
++ KD ++ F KL + +D+ L D ++P IQ+NY++ P +A
Sbjct: 131 HADNTHKDVNLGIFEIARKLLSESSSLSIIDKS-SLFFMDYSMIPKFIQDNYLHIHPFAA 189
Query: 654 GRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLE 713
D K L L+++AA+ ++ D+ +R +Q W L + + S ++P +M+G
Sbjct: 190 KGDTKKHLHLLSKAADCLATSDLIESTMRSSQSWSLLPTLGMMSTVLPTTIMNGSM---- 245
Query: 714 QGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLT 772
G NF F GK ST GKN RLL++L FH L + ++ +TL LD + L L
Sbjct: 246 HGMINFPSF---FGKLSTTGKNHRLLQELKFHSSLVTGGAQ--EETLNLDVLTYLRWHLY 300
Query: 773 EPLR 776
PL+
Sbjct: 301 RPLQ 304
>gi|300123536|emb|CBK24808.2| unnamed protein product [Blastocystis hominis]
Length = 463
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/358 (33%), Positives = 200/358 (55%), Gaps = 24/358 (6%)
Query: 347 TEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSP 406
T KY P++ +IVGNQ ++ L+ WL W+ T T + K+ D+S +A ++SG P
Sbjct: 126 TTKYAPRSLEDIVGNQNNIRNLYNWLLQWDTNHSSTSTS-DTKRSRDSS--RAVLISGPP 182
Query: 407 GMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANM 466
G+GKTT ++ C+ G++ I++NASD R + + +++K+ S LS
Sbjct: 183 GIGKTTCVEVCCRQAGYELIQLNASDKRNMSFVR----------DTLKDSTSIIPLSF-- 230
Query: 467 DRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCS 526
K + ++MDEVDGMS+GDRGGI +LI IKI++IPIICICND S K++SL +YC
Sbjct: 231 -EKKRIRKAILMDEVDGMSSGDRGGIQELIRIIKITQIPIICICNDDASAKVRSLSSYCY 289
Query: 527 DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVI 586
LRF KP ++ R+ I + E +++++ ++ L + GD R +N LQ +SLS S I
Sbjct: 290 SLRFEKPLPMQMLPRVRFICHNERIQISDDSILSLVTSIGGDFRQILNHLQLVSLSRSPI 349
Query: 587 KYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYI 646
L KD+ I + + ++ + +R DL D ++VPLLIQ+NY+
Sbjct: 350 HSAASSLSL----KDKSIGLVASEASKLMLSNSRMSIQDRYDLFFIDYEMVPLLIQQNYV 405
Query: 647 NYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQS--SSLASCIIPA 702
+ + + + + +L +A AA+S+ D ++ + + +L+ S + C +P+
Sbjct: 406 S--SALSNQSQGNKLQQLADAADSVCDMEMMRDTMLKTNARKLAGCLISRIGRCFLPS 461
>gi|145483719|ref|XP_001427882.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124394965|emb|CAK60484.1| unnamed protein product [Paramecium tetraurelia]
Length = 929
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 126/403 (31%), Positives = 198/403 (49%), Gaps = 32/403 (7%)
Query: 311 EAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHT 370
E + S K E K V + ++ +Q WT KY P ++ + +Q V +
Sbjct: 349 EIVNFSKNKQIQEEQKKVQKIEQIMVEDTKQKCQLWTNKYAPSKVSDCL-DQTHVPNIVK 407
Query: 371 WLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
WL W + L+ G Q+ A KA +LSG PG+GKTT +L+ + +Q IE NA
Sbjct: 408 WLDKWGKPQLEICP---GSFQSQNFAAKALLLSGPPGIGKTTIIRLIAKQKSYQLIEWNA 464
Query: 431 SDSRGKADAKISKGIGGSNANSIKELVSNEAL---SANMDRSKHPKTVLIMDEVDGMSAG 487
SD R K + N +K L N L AN+ KT+++MDEVDGM+
Sbjct: 465 SDVRSKLQIE----------NYVKHLQDNTVLRFKDANL--ISEGKTIILMDEVDGMTGS 512
Query: 488 DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
DRGG LI I+++K+PI+CICNDR Q ++SL NYC DL+F+KP + EI K+L I
Sbjct: 513 DRGGNKCLIDMIRLTKVPIVCICNDRNKQSMRSLANYCLDLQFKKPNQVEIFKKLEYICK 572
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISP- 606
+E + + L++ + DIR +N LQ + L + +I KD ++
Sbjct: 573 SENISYDPAELKQQIEVSQCDIRQLLNLLQMHKVGLKLHIDKNI-------GKDGSVTTN 625
Query: 607 -FTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLI 664
+ + L + + L + + +D DPD+ ENY++ S + + I
Sbjct: 626 LYESTRMLLNYKDSQNLPIHKLMDFYFQDPDMTQFFYHENYLDL--SLVKKTPSNSIQNI 683
Query: 665 ARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHG 707
+ AA S++D D+ N ++ R+Q W L + S + P ++ G
Sbjct: 684 SLAASSLADADVLNTKV-RSQMWGLMPNVGFLSTMYPTQILKG 725
>gi|167520484|ref|XP_001744581.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776912|gb|EDQ90530.1| predicted protein [Monosiga brevicollis MX1]
Length = 554
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 202/389 (51%), Gaps = 30/389 (7%)
Query: 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
+A ++ G PG+GKTT A +VC+ G++ IE+NASD R + + + IG N
Sbjct: 160 QAVLMVGPPGVGKTTTATVVCRECGYEPIELNASDVRNRG--LLHEKIGALTGNKTMTQF 217
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQ 516
+ A + KT LI DEVDGM+ DRGG+ ++I I +K+PIICI ND +
Sbjct: 218 YQQGQQAVVK-----KTALIFDEVDGMAGNEDRGGVGEIIKLINTTKMPIICIAND-IPR 271
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
KL +L C +LRF +PR Q++ +M +A+ EGL+VN I ++++ + +GD+R +N +
Sbjct: 272 KLMTLKGKCYNLRFSRPRAQQVVGAMMTVAHREGLKVNPIIVQQMVEAADGDMRQVLNNM 331
Query: 577 QYMSLSLS--VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLR--MDERIDLSMS 632
S V + D ++ ++ K+ + F + K F G+ R + E D
Sbjct: 332 YLFSRDDPDLVAQADKVKANAKAAHKNIAQNTFDVIHKFF---KGRERPNIYELTDAFFV 388
Query: 633 DPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQS 692
D ++PL +QENY+ ++ S V+ L+ +++AA++IS+ D+ + + ++
Sbjct: 389 DYSIMPLFVQENYLKHKDSDV--STVEHLTRLSQAADAISESDLLSTVMMSQSNYKALPV 446
Query: 693 SSLASCIIPAALMHGQRETLEQGERNFNRFGG------WLGKNSTMGKNLRLLEDLHFHH 746
++ SCI P L G QGE GG WLGK S+ K R +L H
Sbjct: 447 LAVQSCIRPGYLSRGSF----QGEFRPPYGGGQYTFPSWLGKYSSQSKFKRYTSELQ-QH 501
Query: 747 LASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
+ S RD +RL Y L ++L +PL
Sbjct: 502 MRMAISADSRD-VRLAYVPYLRQRLNKPL 529
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Query: 200 GAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTK 259
GA +CLGGL FVI+G L+SLERE+ ++L+K HGG + SVSK+ +Y++ ++ +K +K
Sbjct: 1 GALNCLGGLKFVITGVLESLEREDVQELVKDHGGVIQKSVSKRVDYVVAGDEPGPSKMSK 60
Query: 260 AKELGTPFLTEDGLFDMIRASKPMKAL 286
A++L L EDGLF++IR ++P +A
Sbjct: 61 ARDLKLKVLDEDGLFELIR-TRPAQAF 86
>gi|145508475|ref|XP_001440187.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407393|emb|CAK72790.1| unnamed protein product [Paramecium tetraurelia]
Length = 933
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 120/371 (32%), Positives = 189/371 (50%), Gaps = 40/371 (10%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WT KY P ++ + +Q V + WL W + L+ G Q+ A KA +LSG
Sbjct: 390 WTNKYAPSKVSDCL-DQTHVSNIVKWLDKWGKTQLEICP---GSFQSQNFAAKALLLSGP 445
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL--- 462
PG+GKTT +L+ + +Q IE NASD R K + N +K L N L
Sbjct: 446 PGIGKTTIIRLIAKQKSYQLIEWNASDVRSKLQIE----------NYVKHLQDNTVLRFK 495
Query: 463 SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
AN+ KT+++MDEVDGM+ DRGG LI IK++K+PI+CICN+R Q +++L
Sbjct: 496 DANL--ISEGKTIILMDEVDGMTGSDRGGNKCLIDMIKLTKVPIVCICNERNKQSMRTLA 553
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
NYC DL+F+KP + EI K+L I +E + + L++ + DIR +N LQ +
Sbjct: 554 NYCLDLQFKKPNQVEIQKKLEFICKSENINYDPAELKQQIEFSQCDIRQLLNLLQMHKVG 613
Query: 583 LSVIKYDDIRQRLLSSAKDEDISP--FTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPL 639
L + +I KD ++ + + L + + L + + +D DPD+
Sbjct: 614 LKLHIDKNI-------GKDGSVTTNIYESTKILLNYKDSQTLPIHKLMDYYFQDPDMTQF 666
Query: 640 LIQENYINY---RPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLA 696
ENY++ PS+ +S I++AA S++D D+ N ++ R+Q W L +
Sbjct: 667 FYHENYLDLIKKAPSNT-------ISHISQAASSLADADVLNSKV-RSQMWGLMPNVGFL 718
Query: 697 SCIIPAALMHG 707
S + P ++ G
Sbjct: 719 STMYPTQILKG 729
>gi|242216981|ref|XP_002474294.1| predicted protein [Postia placenta Mad-698-R]
gi|220726586|gb|EED80531.1| predicted protein [Postia placenta Mad-698-R]
Length = 731
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/315 (34%), Positives = 170/315 (53%), Gaps = 18/315 (5%)
Query: 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRK 532
KT LIMDEVDGMSAGDRGG+ L A I+ +KIPIICI NDR + K+K L N +L FR+
Sbjct: 296 KTCLIMDEVDGMSAGDRGGVGALAALIRKTKIPIICIANDRGAPKMKPLSNAAYNLTFRR 355
Query: 533 PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIR 592
P I R++ IA E +++ +++L + DIR +N L LS + +D+ +
Sbjct: 356 PEATTIRSRILSIAFKEKMKIPANVIDQLVEGAQSDIRQVLNMLSTWKLSNDTMDFDEGK 415
Query: 593 QRLLSSAKDEDISPFTAVDKLFG---FN-GGKLRMDERIDLSMSDPDLVPLLIQENYINY 648
++ K ++PF + K+ G F+ + ++++++L D VPL IQENY+
Sbjct: 416 ALAKANEKYGIMTPFNIIQKMLGPYMFSPTARETLNDKMELYFHDHSFVPLFIQENYLKT 475
Query: 649 RPSSA----GRDEV-KRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPA 702
+P+ G +++ K+L L+ +AA SISDGD+ + I Q W L ++ S + PA
Sbjct: 476 QPAKIRNIDGPEKILKQLQLMDKAASSISDGDLVDSLIHGPEQHWSLMPLHAVCSTVRPA 535
Query: 703 ALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRD--TLR 760
+ ++G G N F WLG+NS K +R L ++ A + K+ D +R
Sbjct: 536 SFLYGMGAAY--GGPNAMSFPQWLGQNSKQNKLVRQLTEIQ----ARMRVKVSGDKTEIR 589
Query: 761 LDYFSLLLKQLTEPL 775
Y L + +PL
Sbjct: 590 QSYTPALFPHIVKPL 604
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 189 PPHKGEKEVPEGA-PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLL 247
P G K +P+ A PDCL GLTFV +G L SL R+EA +L KRHGGRVTG S KT++++
Sbjct: 100 PVAPGSKPIPQAAAPDCLAGLTFVFTGELSSLSRDEAIELAKRHGGRVTGQPSSKTSFVV 159
Query: 248 CDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKP 282
D +K K+ L ED +I P
Sbjct: 160 LGSDAGPSKLAAIKKNNLTTLDEDSFLQLIATRVP 194
>gi|403351956|gb|EJY75481.1| Replication factor C subunit protein, putative [Oxytricha
trifallax]
Length = 1043
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/415 (29%), Positives = 195/415 (46%), Gaps = 89/415 (21%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL-----DTGTKRNGKKQNDA 394
++S+ W++KY P +E+VGNQ+ ++Q + WL W + L + T+ N K Q+
Sbjct: 500 ERSTQLWSDKYTPTCISELVGNQREIEQFYDWLRDWEDVHLKGHKKELYTRCNNKYQDIP 559
Query: 395 SAE-KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSI 453
KA I+SG PG+GK++ ++V + LG+ IE N+SD+R K +I
Sbjct: 560 KQNAKACIISGPPGIGKSSTVRVVAKELGYLLIENNSSDNRQKK--------------TI 605
Query: 454 KELVSNEALSANMDRSK-----HPK-TVLIMDEVDGMSAGDRGGIADLIASIKISKIPII 507
+ L+ + S++++R + H K T+++MDE+DGM DRGG+ LI I + IPI+
Sbjct: 606 ENLLKDSTTSSSINRFQTDQTGHLKRTIILMDEIDGMCFKDRGGMNALIKVISTTMIPIV 665
Query: 508 CICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567
CI ND ++KL +L+N C +LRF KP ++I KR+ ++ E ++ AL D+
Sbjct: 666 CIANDGRARKLSNLLNSCYELRFNKPSSEDIMKRIRVLSQHEKFSIDPNALSRFFDQSGF 725
Query: 568 DIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERI 627
DIR +N LQ T DK
Sbjct: 726 DIRHILNMLQMHR---------------------------TTSDKF-------------- 744
Query: 628 DLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
L+ ENY S+ +++ L A+AA+ IS GD N QIR +Q W
Sbjct: 745 -----------LIGDENYWAAFGQSSSLMDIEYL---AQAADFISLGDNINAQIRYHQDW 790
Query: 688 QLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDL 742
L + + CI P GQ+ + F WL KN+ + R+L D+
Sbjct: 791 SLIANLGIIGCIAPGVFSPGQKLQI--------IFPEWLMKNNIQKRINRMLRDV 837
>gi|390365767|ref|XP_001199037.2| PREDICTED: replication factor C subunit 1-like [Strongylocentrotus
purpuratus]
Length = 387
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 150/280 (53%), Gaps = 19/280 (6%)
Query: 419 QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT---- 474
Q LGF IE NASDSRGK + GG I E + N+++S + KT
Sbjct: 2 QELGFSFIEQNASDSRGKKSLQ-----GG-----IAESLDNQSISDMFKKGCGKKTSDEG 51
Query: 475 ---VLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRF 530
LIMDEVDG++ DRGGI +LI IK ++ PIICICNDR K++SLVNYC DLRF
Sbjct: 52 HKHCLIMDEVDGVAGNEDRGGIQELIQMIKSTRTPIICICNDRSHPKIRSLVNYCFDLRF 111
Query: 531 RKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDD 590
++PR +I +M IA EGL V AL+ + N D+R ++ L S + +
Sbjct: 112 QRPRVPQIKSAMMSIAYKEGLSVPPAALDGMIMAANQDVRQVLHNLSMWSAGQKKMNAEQ 171
Query: 591 IRQRLLSSAKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYR 649
+ ++ KD + P+ ++F K + ++++DL D + L +QENY++
Sbjct: 172 MNTDARNAKKDLKLGPWDVARQVFSSKDLKTMSFNDKMDLFFHDYSIAGLFVQENYLHVI 231
Query: 650 PSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
P D K+L L+++AA+S+ D+ IR W+L
Sbjct: 232 PDEGRGDIKKQLDLVSKAADSMCQSDLVEKAIRTRNCWRL 271
>gi|378756760|gb|EHY66784.1| DNA ligase [Nematocida sp. 1 ERTm2]
Length = 513
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 136/499 (27%), Positives = 215/499 (43%), Gaps = 105/499 (21%)
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
G TFV++GT + RE+ + I+ GG+VT SVS T +LL + AK KA LGT
Sbjct: 12 GRTFVVTGT-TKMSREDLVNRIRELGGKVTLSVSGATTFLLAGSEPGPAKLKKAVALGTK 70
Query: 267 FLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMK 326
L+E+ +M Q IE K T + ER
Sbjct: 71 VLSEEDFMEMTS-------------------------HYIIQPIEIKKTKSENTSKER-- 103
Query: 327 TVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKR 386
W +KY+P T +EIVGN+ V QL T L
Sbjct: 104 -------------------WCDKYKPATTSEIVGNKMAVTQLKTHLL------------- 131
Query: 387 NGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIG 446
+ + +L GS G+GKT + L + LG IE N SD R K + I KG+
Sbjct: 132 -------SMSRVPIVLVGSSGIGKTLSVYLAAKELGISLIEYNGSDYRNKQEVSIIKGLS 184
Query: 447 GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPI 506
S D H L+M+E++ M++ DRGG+ +++ K +KIPI
Sbjct: 185 TQK-------------SLTRDIHLHKNKALLMEEIENMTSSDRGGLQEVLNLFKETKIPI 231
Query: 507 ICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN 566
I N++ SQ +K+++ C + + K + I L IA+ EG+ V E L +++ N
Sbjct: 232 ILTANNKNSQNIKTVLTKCKVISYSKVDSRSIVAHLKNIASKEGISVPENTLMQISVTAN 291
Query: 567 GDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMD-- 624
GD+R A+N LQY+S + I +DIR + + LF L+
Sbjct: 292 GDVRYAVNMLQYLS-KKNKISTEDIR----------IMGKHMTSNNLFDVTKEILQPHVS 340
Query: 625 --ERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIR 682
++IDL +P L++ ENY+ G +K A ++++S +I N ++
Sbjct: 341 PAQKIDLFFEEPMFALLMVFENYL-------GEGTIKN---AAEISDTLSMAEIANARML 390
Query: 683 RNQQWQLSQSSSLASCIIP 701
+ + +L ++ + + P
Sbjct: 391 NSDEKRLFPVAAYYTAVKP 409
>gi|340509271|gb|EGR34821.1| hypothetical protein IMG5_000480 [Ichthyophthirius multifiliis]
Length = 330
Score = 155 bits (393), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 127/218 (58%), Gaps = 25/218 (11%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQ-----NDA 394
Q+SSL WTEKY P++ +I+GNQ+ + + WL +W + L +N K+ N +
Sbjct: 25 QKSSLLWTEKYAPESVEQIIGNQKSILSIMEWLKNWEDTVLHKKPTQNQTKKPYQMYNKS 84
Query: 395 S------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS 448
S + +A +LSG PG+GKTT+ +L+ +G++ +E NASD R K +
Sbjct: 85 SVPPPNPSARACLLSGPPGVGKTTSIRLITAFMGYELLEWNASDVRNKKKVE-------- 136
Query: 449 NANSIKELVSN-EALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPII 507
EL SN + LS + K K ++MDE+DGMS GDRGGI +I IK SK PI
Sbjct: 137 --QLFDELKSNTQVLSFS---GKMKKVAVLMDEIDGMSGGDRGGIQAIIKLIKESKSPIF 191
Query: 508 CICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQI 545
CICNDR K++SL N C D++F + Q++AK ++QI
Sbjct: 192 CICNDRMHPKIRSLANSCYDVKFFNVQSQDVAKHVLQI 229
>gi|387594368|gb|EIJ89392.1| hypothetical protein NEQG_00162 [Nematocida parisii ERTm3]
gi|387596789|gb|EIJ94410.1| hypothetical protein NEPG_01078 [Nematocida parisii ERTm1]
Length = 513
Score = 153 bits (386), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 134/475 (28%), Positives = 218/475 (45%), Gaps = 103/475 (21%)
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
G TFV++GT + RE+ + I+ GG+VT +S T YL+ E+ AK KA GT
Sbjct: 12 GRTFVVTGTTKT-PREDLVNRIRELGGKVTLGISGVTTYLIAGEEPGPAKLKKAVAHGTK 70
Query: 267 FLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMK 326
L+E+ +M + E KKS +V + ER
Sbjct: 71 ILSEEDFIEMTSHY----IILPIEVKKSKPEVYSK---------------------ER-- 103
Query: 327 TVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKR 386
W +KY+P+T ++I+GN+Q + QL T L
Sbjct: 104 -------------------WCDKYKPETSSDILGNKQTITQLKTHLL------------- 131
Query: 387 NGKKQNDASAEKAAIL-SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI 445
S +A IL +GS G GKT +A L+ + LG IE N +D R K + I KG
Sbjct: 132 --------SMSRAPILLTGSSGCGKTLSAYLIAKELGISLIEYNGADYRNKQEVSIIKG- 182
Query: 446 GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIP 505
L + ++L+ + H L+M+E++ M++ DRGG+ +++ K +KIP
Sbjct: 183 ----------LSTQKSLTHGIHL--HKNKALLMEEIENMTSSDRGGLQEILNLFKETKIP 230
Query: 506 IICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV 565
II N++ SQ LK++++ C + + K + I L I EG+ V E L +++
Sbjct: 231 IILTTNNKGSQNLKTIISKCKVIPYSKIDSRSITNLLKTITIKEGISVPENTLMQISVTA 290
Query: 566 NGDIRMAINQLQYMSLSLSVIKYDDIRQ--RLLSSAKDEDISPFTAVDKLFGFNGGKLRM 623
GD+R AIN LQY+S I +DI+ + ++S+ D++ + L +N
Sbjct: 291 GGDVRYAINMLQYLS-KKDQISTEDIKIMGKHITSSNLFDVTK----EILQSYNSPA--- 342
Query: 624 DERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFN 678
+I+L +P L++ ENY+ G D +K IA A+++S +I +
Sbjct: 343 -HKINLFFEEPLFALLMVFENYL-------GEDTLKS---IANTADTLSTAEIIS 386
>gi|300175670|emb|CBK20981.2| unnamed protein product [Blastocystis hominis]
Length = 344
Score = 153 bits (386), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 125/378 (33%), Positives = 196/378 (51%), Gaps = 54/378 (14%)
Query: 226 DLIKRHGGRVTGSVSKKTNYLLCDEDIA-------GAKSTKAKELGTPFLTEDGLFDMIR 278
+LI R+GG +VS KTNYL+ ++ G+K KA E + ED L MIR
Sbjct: 3 ELISRYGGIERSAVSGKTNYLVVGFEMEDGRPITEGSKYKKAVEKNVRIINEDELLAMIR 62
Query: 279 ASKP-MKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQ 337
AS P A ++AE KS + +E ++ +++ +T+ K
Sbjct: 63 ASNPEASAASEAEQLKS-------------KQLEEENA------VQKEETLM-----KDH 98
Query: 338 NIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQN-DASA 396
+ S L +T KY P + EI+GN+ +++ + WL W++ F+ QN DA
Sbjct: 99 DFVSSDL-FTVKYAPSSIKEIIGNEGIIENVKQWLTQWDDVFIHKRITVKHTSQNPDA-- 155
Query: 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIK 454
KA +LSG PG+GKTT+A ++ + G++ +E+NASD+R + + + I N +
Sbjct: 156 -KAVLLSGPPGIGKTTSAHIIAKECGYEIVELNASDTRNRKSVQRFFNDMIVTKN---VH 211
Query: 455 ELVSNEALSANMDRSKHPKT-------VLIMDEVDGMSAGDRGGIADLIASIKISKIPII 507
+ S+ + SA D PK +++MDEVDGM GDRGGI +LI I+ S IPII
Sbjct: 212 QFFSDHS-SAKTDSQSKPKVGNANAKILVVMDEVDGMGGGDRGGIGELIQVIEASMIPII 270
Query: 508 CICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567
CICNDR ++K++SL C D F K + + RL I E + +++ L EL + G
Sbjct: 271 CICNDRDNKKIQSLARKCYDCSFGKLPQDAMITRLQFICKKEEIAMSKADLAELVESSGG 330
Query: 568 DIRMAINQLQYMSLSLSV 585
D+R Q+ ++++V
Sbjct: 331 DMR----QVACFCVAMNV 344
>gi|302412927|ref|XP_003004296.1| replication factor C subunit 1 [Verticillium albo-atrum VaMs.102]
gi|261356872|gb|EEY19300.1| replication factor C subunit 1 [Verticillium albo-atrum VaMs.102]
Length = 342
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 165/320 (51%), Gaps = 26/320 (8%)
Query: 478 MDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQE 537
MDEVDGMSAGDRGG+ L K +++P+I ICN+R K+K + D++FR+P +
Sbjct: 1 MDEVDGMSAGDRGGVGALAKYCKKTEVPLILICNERRLPKMKPFDHVAMDIQFRRPTVDQ 60
Query: 538 IAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLS 597
+ R+M I + EGL++ ++ L + N DIR IN + L S + +D + +
Sbjct: 61 VRSRIMTICHREGLKLPPPVVDALIEGSNKDIRQIINMISTAKLDQSAMDFDQGKAMTKA 120
Query: 598 SAKDEDISPFTAVDKLFGFNGGKL------RMDERIDLSMSDPDLVPLLIQENYINYRPS 651
K + P+ K+ G GG ++++I+L +D + L+IQENY+ +P
Sbjct: 121 WEKHVVLKPWDICQKMLG--GGLFAPSSNATLNDKIELYFNDHEFSYLMIQENYLRCKPM 178
Query: 652 SAG------RDE-VKRLSLIARAAESISDGDIFNVQIR-RNQQWQLSQSSSLASCIIPAA 703
+ R+E +K L L +AAESISDGD+ + I QQW L + ++ S + PA+
Sbjct: 179 ALNNRGYNKREENLKALELFDQAAESISDGDLVDRMIHGPQQQWSLMPTHAIFSTVRPAS 238
Query: 704 LMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDY 763
+ GQ + F WLG NS GK R + ++H H +S + +R Y
Sbjct: 239 FIAGQLMG--------SNFTSWLGNNSKTGKLNRFIREIHAH--MRLRSSGDANEIRQQY 288
Query: 764 FSLLLKQLTEPLRVLPKDEL 783
+L +++ L + KD +
Sbjct: 289 LPVLWERIIRRLDIEGKDSV 308
>gi|207341021|gb|EDZ69195.1| YOR217Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 433
Score = 152 bits (383), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 150/300 (50%), Gaps = 19/300 (6%)
Query: 484 MSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLM 543
MS GDRGG+ L + + P+I ICN+R K++ C D++FR+P I RLM
Sbjct: 1 MSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLM 60
Query: 544 QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDED 603
IA E +++ ++ L GDIR IN L +S + I +++I + + K+
Sbjct: 61 TIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIA 120
Query: 604 ISPFTAVDKLF------GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDE 657
+ PF K+ ++++I L D D PL+IQENY++ RPS +
Sbjct: 121 LKPFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPGQ 180
Query: 658 VKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGE 716
L +A AA IS GDI +IR ++Q W L ++ S + PA+ + G G
Sbjct: 181 -SHLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAGHMA----GR 235
Query: 717 RNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
NF WLG+NS K RLL+++H+H L + K+G LRLDY K+L +P
Sbjct: 236 INFT---AWLGQNSKSAKYYRLLQEIHYHTRLGTSTDKIG---LRLDYLPTFRKRLLDPF 289
>gi|198414852|ref|XP_002119468.1| PREDICTED: similar to ISRE-binding protein, partial [Ciona
intestinalis]
Length = 568
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 156/293 (53%), Gaps = 38/293 (12%)
Query: 180 FMNFGE---RKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVT 236
FM + + R PP+ G KE+P+G +C+ GL+FVI+G DSL REE + L++R+GG+V
Sbjct: 255 FMKYKQWQNRGGPPNPGSKEIPKGEKNCMEGLSFVITGVQDSLSREEIKSLVERYGGKVV 314
Query: 237 GSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASK-----------PMKA 285
+VS +T+YL+ D +K KAK+ T + ED D+IR K P+K
Sbjct: 315 SAVSGRTSYLITGTDAGESKLNKAKQHKTKIIEEDEFLDLIRTLKGKKSKYDVYESPVKT 374
Query: 286 LAQAESKKSVEKVAAS-LP------KKSPQNIEAKSTSAPKAPIERMKTVAS-PAKRK-- 335
+++ +++K + + LP P IE S+ + + +++S PA +K
Sbjct: 375 KKSPKAETAIKKESITKLPSTQPKKSPKPPKIEMSSSQSSQTSANSQGSLSSLPASQKLV 434
Query: 336 -GQNIQQSSLTWTEKYRPKTPNEIVGNQ---QLVKQLHTWLAHWN-EKFLDTGTKRNGKK 390
G N Q L W +KY+PKT +I+G Q + +L WL +W+ TG + K
Sbjct: 435 AGNNTHQ--LMWVDKYKPKTIKQIIGQQGASSNMNKLLQWLRNWHSNNRTATGKSKPKPK 492
Query: 391 QND-------ASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436
N KAA+LSG PG+GKTT A L CQ LGF IE+NASD R K
Sbjct: 493 TNQWGGGDPTGVGFKAALLSGPPGVGKTTTATLACQELGFSFIELNASDQRSK 545
>gi|58270156|ref|XP_572234.1| sister chromatid cohesion-related protein [Cryptococcus neoformans
var. neoformans JEC21]
gi|57228492|gb|AAW44927.1| sister chromatid cohesion-related protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 892
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 179/392 (45%), Gaps = 60/392 (15%)
Query: 337 QNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDAS- 395
+ IQ + W +KYRPK +++G ++ +++ +WL W++ + K+ DAS
Sbjct: 263 KKIQMGTTMWVDKYRPKKFTDLLGEDRVHREVMSWLKEWDKCVFKRQQPQAKKRPFDASD 322
Query: 396 ------------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISK 443
E+ +LSG PG GKTT A +V + G++ +E+NASD R
Sbjct: 323 SKPFAVDPLGRPHERVLLLSGPPGYGKTTLASIVARHAGYRILEINASDDR--------- 373
Query: 444 GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI---- 499
+ +++ + N + ++ T +++DE+DG G+ G I LI I
Sbjct: 374 -----SYQTVQTRIRNAVDAGTSLGAEGKPTCVVIDEIDGAGGGESGFIKALIKLIQDVP 428
Query: 500 ---------KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEG 550
K + PIICICND Y+ L+ L +Y +RFRKP+ Q + RL I EG
Sbjct: 429 AKKKSNTPAKPLRRPIICICNDLYAPALRPLRSYARIIRFRKPQAQSLVVRLRDICKREG 488
Query: 551 LEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAV 610
L+ + +L L + +GD+R +N LQ++ SV+ + IR L KD + TA
Sbjct: 489 LQSDTRSLNTLVEMTSGDVRSCLNTLQFIKSRSSVVTEEAIRATSL-GLKDTSTTLQTAW 547
Query: 611 DKLF-GFNGGKLRMDERIDLSMSDPDLVPLL------------IQENYINYRPSSAGRDE 657
+ +F K R ID + P ++P++ E+Y N +P
Sbjct: 548 NAIFIPLAAKKRRAQGSIDDTRYLPRIIPIINSCGEYDKLLLGAFEHYPNLKPLDGT--- 604
Query: 658 VKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+ + + E ++ D ++ Q+W+L
Sbjct: 605 ---MKNLTKVHEWLAFSDRLQARVTSEQEWEL 633
>gi|253742407|gb|EES99241.1| Replication factor C, subunit 1 [Giardia intestinalis ATCC 50581]
Length = 886
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 151/614 (24%), Positives = 260/614 (42%), Gaps = 116/614 (18%)
Query: 172 GRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRH 231
+GGG ++ R + E P G + L L FV +G L ++ + + I
Sbjct: 147 AKGGG-----SYNSRTNASVNYETPRPRGLANSLSKLIFVRTGNLRTMSDTDMKLYIANL 201
Query: 232 GGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMI--RASKP------- 282
GG VT SVS KT+YL+ +D K AK ++E +D+I + S P
Sbjct: 202 GGTVTTSVSGKTSYLIVGDDPGATKLRDAKAKFVRIISEKEFYDLIVKKGSIPDWVPWVP 261
Query: 283 ----MKALAQAESKKSV----------------EKVAASLPKKSPQNIEAKSTSAPKAPI 322
++ + E V +++ A P + + +
Sbjct: 262 FTESLQPFTEDELADLVAEHNKQHNSSEHGAMGDELVALGAATEPPTVHSTNLVVKMETD 321
Query: 323 ERMKTVASPAK-----RKGQN----IQQS--SLTWTEKYRPKTPNEIVGNQQLVKQLHTW 371
+ K VA+ A +GQ +Q S L W K++P IVGN ++ QL W
Sbjct: 322 SQAKKVATDAHAHRDSTEGQEDTVPLQTSMPELDWIVKHKPTHLLAIVGNTIVINQLKLW 381
Query: 372 LAHWNEKFLD------TGTKRNGKKQNDASAE----KAAILSGSPGMGKTTAAKLVCQML 421
L W + F+ + R+ K + AE K A++SG PG+GKT A L+ Q
Sbjct: 382 LTSWMDAFITKKSVEAILSSRDYAKYSKGMAERFQFKTALVSGLPGIGKTLAVSLIVQDS 441
Query: 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHP--------K 473
G+ ++ ++ R K + +++ ++ N + + +++ P K
Sbjct: 442 GYSPYYLSVAEQRSKLSLQ----------DALSDVFENRGIIGFLGKTRRPDGHVAENVK 491
Query: 474 T--VLIMDEVDGMSAGDRGGIADLIASI--KISKIPIICICNDRYSQKLKSLVNYCSDLR 529
T LI+DE + M D GG + L++ + + +++PII ICN+ + QKLK+L + C+
Sbjct: 492 TGLCLIIDECESM---DAGGASYLLSVMNKESNRVPIIFICNNAHDQKLKTLRSRCALFS 548
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
F +P+K + K LM +A AEG+ + +A+RV+ D+R AIN+LQ+ + Y
Sbjct: 549 FERPQKDMVGKFLMSVAEAEGISLQPGHASLIAERVHSDVRYAINELQFRTAGNKGSAYS 608
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDER------------------IDLSM 631
+ LSS +P F L +D R + L M
Sbjct: 609 ---AKTLSSLYTVTATPTM-------FETWNLILDYRVLKQWVANTKHDGCYKSLVTLHM 658
Query: 632 SDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQ 691
DP L I + NYR +AG L+ + ++ +S G+ ++ W S+
Sbjct: 659 GDPSLNTAGI---FQNYRTKTAG-----LLTYTSILSDLLSTGETMLSRMMSVGDWACSR 710
Query: 692 SSSLASCIIPAALM 705
++ S ++P ++
Sbjct: 711 DQAVFSAVLPNLIL 724
>gi|321264352|ref|XP_003196893.1| sister chromatid cohesion-related protein [Cryptococcus gattii
WM276]
gi|317463371|gb|ADV25106.1| sister chromatid cohesion-related protein, putative [Cryptococcus
gattii WM276]
Length = 887
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 177/392 (45%), Gaps = 60/392 (15%)
Query: 337 QNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDAS- 395
+ IQ W +KYRPK +++G ++ +++ +WL W++ + K+ DAS
Sbjct: 258 KEIQMGMTMWVDKYRPKRFTDLLGEDRVHREVMSWLKEWDKCVFKRQRTQAKKRPFDASD 317
Query: 396 ------------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISK 443
E+ +LSG PG GKTT A +V G++ +E+NASD R
Sbjct: 318 SKPFAVDPLGRPHERVLLLSGPPGYGKTTLASVVAHHAGYRILEINASDDR--------- 368
Query: 444 GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI---- 499
+ +++ + N + ++ T +++DEVDG G+ G I LI I
Sbjct: 369 -----SYQTVQTRIRNAIEAGTSLGAEGKPTCVVVDEVDGAGGGESGFIKALIKLIQDAP 423
Query: 500 ---------KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEG 550
K+ + PIICICND Y+ L+ L Y +RFRKP+ Q + RL I EG
Sbjct: 424 ARRKSSTPAKLLRRPIICICNDIYAPALRPLRPYARIIRFRKPQAQSLVVRLRDICQREG 483
Query: 551 LEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAV 610
L+ + +L L + +GD+R +N LQ++ V+ + IR L KD + TA
Sbjct: 484 LQADTRSLNTLVEMTSGDVRSCLNTLQFIKSRSPVVTEEAIRATSL-GLKDTSTTLQTAW 542
Query: 611 DKLF-GFNGGKLRMDERIDLSMSDPDLVPLL------------IQENYINYRPSSAGRDE 657
LF K R ID + P ++P++ E+Y N +P
Sbjct: 543 KALFVPLAAKKRRAQGNIDDTRYLPRIIPIINSCGEYDKLLLGAFEHYPNLKPLDG---T 599
Query: 658 VKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+K L+ + E ++ D ++ Q+W+L
Sbjct: 600 MKNLT---KVHEWLAFSDRLQARVTSEQEWEL 628
>gi|134117578|ref|XP_772560.1| hypothetical protein CNBL0400 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255175|gb|EAL17913.1| hypothetical protein CNBL0400 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 892
Score = 150 bits (378), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 104/392 (26%), Positives = 178/392 (45%), Gaps = 60/392 (15%)
Query: 337 QNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDA-- 394
+ IQ + W +KYRPK +++G ++ +++ +WL W++ + K+ DA
Sbjct: 263 KKIQMGTTMWVDKYRPKKFTDLLGEDRVHREVMSWLKEWDKCVFKRQQPQAKKRPFDAFD 322
Query: 395 -----------SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISK 443
E+ +LSG PG GKTT A +V + G++ +E+NASD R
Sbjct: 323 SKPFPVDPLGRPHERVLLLSGPPGYGKTTLASIVARHAGYRILEINASDDR--------- 373
Query: 444 GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI---- 499
+ +++ + N + ++ T +++DE+DG G+ G I LI I
Sbjct: 374 -----SYQTVQTRIRNAVDAGTSLGAEGKPTCVVIDEIDGAGGGESGFIKALIKLIQDVP 428
Query: 500 ---------KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEG 550
K + PIICICND Y+ L+ L +Y +RFRKP+ Q + RL I EG
Sbjct: 429 AKKKSNTPAKPLRRPIICICNDLYAPALRPLRSYARIIRFRKPQAQSLVVRLRDICKREG 488
Query: 551 LEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAV 610
L+ + +L L + +GD+R +N LQ++ SV+ + IR L KD + TA
Sbjct: 489 LQSDTRSLNTLVEMTSGDVRSCLNTLQFIKSRSSVVTEEAIRATSL-GLKDTSTTLQTAW 547
Query: 611 DKLF-GFNGGKLRMDERIDLSMSDPDLVPLL------------IQENYINYRPSSAGRDE 657
+ +F K R ID + P ++P++ E+Y N +P
Sbjct: 548 NAIFIPLAAKKRRAQGSIDDTRYLPRIIPIINSCGEYDKLLLGAFEHYPNLKPLDGT--- 604
Query: 658 VKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+ + + E ++ D ++ Q+W+L
Sbjct: 605 ---MKNLTKVHEWLAFSDRLQARVTSEQEWEL 633
>gi|405124039|gb|AFR98801.1| chromosome transmission fidelity protein 18 [Cryptococcus
neoformans var. grubii H99]
Length = 893
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 176/390 (45%), Gaps = 60/390 (15%)
Query: 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDAS--- 395
IQ + W +KYRPK +++G ++ +++ +WL W++ + K+ DAS
Sbjct: 268 IQTETTMWVDKYRPKKFTDLLGEDRVHREVMSWLKEWDKCVFKRQQAQAKKRPFDASDSK 327
Query: 396 ----------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI 445
E+ +LSG PG GKTT A +V + G++ +E+NASD R
Sbjct: 328 PFAEDPLGRPHERVLLLSGPPGYGKTTLASVVARHAGYRILEINASDDR----------- 376
Query: 446 GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI------ 499
+ +++ + N + ++ T +++DEVDG G+ G I LI I
Sbjct: 377 ---SYQTVQSRIRNAIDAGTSLGAEGKPTCVVIDEVDGAGGGENGFIKALIKLIQDVPAR 433
Query: 500 -------KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLE 552
K + PIICICND Y+ L+ L ++ +RFRKP+ Q + RL I EGL+
Sbjct: 434 KKSNVPAKPLRRPIICICNDVYAPALRPLRSHARIIRFRKPQAQSLVVRLRDICKREGLQ 493
Query: 553 VNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDK 612
+ +L L + +GD+R +N LQ++ V+ + IR L KD + TA +
Sbjct: 494 SDTRSLNTLVEMTSGDVRSCLNTLQFIKSRSVVVTEEAIRATSL-GLKDTSTTLQTAWNA 552
Query: 613 LF-GFNGGKLRMDERIDLSMSDPDLVPLL------------IQENYINYRPSSAGRDEVK 659
LF K R ID + ++P++ E+Y N +P
Sbjct: 553 LFIPLAAKKRRAQGSIDDTRYLSRIIPIINSCGEYDKLLLGAFEHYPNLKPLDGT----- 607
Query: 660 RLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+ + + E ++ D ++ Q+W+L
Sbjct: 608 -MKNLTKVHEWLAFSDRLQARVTSEQEWEL 636
>gi|390938547|ref|YP_006402285.1| AAA ATPase [Desulfurococcus fermentans DSM 16532]
gi|390191654|gb|AFL66710.1| AAA ATPase central domain protein [Desulfurococcus fermentans DSM
16532]
Length = 426
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 176/359 (49%), Gaps = 59/359 (16%)
Query: 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK 398
+ Q + W KYRPKT +E+V + +L WL+ W + GK ++K
Sbjct: 1 MSQERVPWIIKYRPKTLDEVVNQDEAKSKLLEWLSSWEK----------GK-----PSKK 45
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
AA+L G PG GKT+ + + + G+Q +E+NASD+R K D I+ +V
Sbjct: 46 AALLHGPPGCGKTSLVEALARSKGYQLLEMNASDARRKED--------------IERIVK 91
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQK 517
+ S + S+ ++++DEVDGM D GG+ L+ IK+S PII N+ YSQ
Sbjct: 92 LASRSGALTGSRK---IILLDEVDGMDVRADTGGVEALVEVIKVSANPIIMTANNPYSQM 148
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
L+ L + F++ +++ L +I +AE L + AL+E+A R GD+R AIN L+
Sbjct: 149 LRPLRELSEMIAFKRLTPRDVITVLKRICSAEKLVCEDQALDEIAKRSEGDLRSAINDLE 208
Query: 578 YMS-----LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMS 632
M+ ++L ++K S+ +D +P+ A+ KLF + R + +
Sbjct: 209 AMAGASERITLGLVKS-------FSTYRDRTYAPYEALQKLF---NSRYIFQAREAPTST 258
Query: 633 D--PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
D PD + I E+ Y + L IARA +++S D++ +I + W L
Sbjct: 259 DLTPDEFMVWINEHIPTY---------YEDLEEIARAYDALSRADVYMGRIIKTNSWDL 308
>gi|440493242|gb|ELQ75739.1| Replication factor C, subunit RFC1 (large subunit)
[Trachipleistophora hominis]
Length = 476
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 109/431 (25%), Positives = 188/431 (43%), Gaps = 97/431 (22%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WT KY P++ +E++GN+ + + ++L + KA +++G
Sbjct: 32 WTVKYEPRSLDEVLGNKTAKEHILSFLEQ-------------------HTPGKALLIAGP 72
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GK+ KL C ++ E NASD R K GS + +++ V+ +S
Sbjct: 73 PGVGKSLCVKLACASTVYEMTEFNASDVRNK----------GSLSERVRQFVNCACISG- 121
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
+ L+MDE DGM+ GDRGG+ +L+ IK +++P+ICICND+Y+ ++ L + C
Sbjct: 122 ------KRRALVMDECDGMT-GDRGGMPELVQIIKNARMPVICICNDKYA--VRPLASVC 172
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV 585
++ FRK ++I R+ I +E V + + E+ N D+R +N LQ
Sbjct: 173 EEVTFRKLETRQILGRIRDILKSEHRAVTDKEIVEVCAMANNDMRYILNCLQ------GR 226
Query: 586 IKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENY 645
+ Y + R L F V LFG E+I+ D +++P+++ ENY
Sbjct: 227 VMYTKVVSRTL----------FDEVLALFGRGTAA----EKIETFFQDYEMMPMMVYENY 272
Query: 646 INYRPSSAGR----------------------------DEVKRLSLIARAAESISDGDIF 677
+ G D +++ A A++SIS D +
Sbjct: 273 LRSEVREDGHVKKDRVNAHKHNKTTKNTRINVYELGESDWHRKMRTYAHASDSISLADTY 332
Query: 678 NVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLR 737
++ N W L ++ +IPA + R F LG S K+ +
Sbjct: 333 LRKMGSN-DWSLLNQYAVFGALIPAQNIKINRRI---------EFPKILGNTSKGNKHNK 382
Query: 738 LLEDLHFHHLA 748
+++ HFH L+
Sbjct: 383 IIQTFHFHILS 393
>gi|218884001|ref|YP_002428383.1| replication factor C large subunit [Desulfurococcus kamchatkensis
1221n]
gi|218765617|gb|ACL11016.1| replication factor C large subunit [Desulfurococcus kamchatkensis
1221n]
Length = 426
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 175/359 (48%), Gaps = 59/359 (16%)
Query: 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK 398
+ Q + W KYRPKT +E+V + +L WL+ W + GK ++K
Sbjct: 1 MSQERVPWIIKYRPKTLDEVVNQDEAKSKLLEWLSSWEK----------GK-----PSKK 45
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
AA+L G PG GKT+ + + + G+Q +E+NASD+R K D I+ +V
Sbjct: 46 AALLHGPPGCGKTSLVEALARSKGYQLLEMNASDARRKED--------------IERIVK 91
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQK 517
+ S + S+ ++++DEVDGM D GG+ L+ IK+S PII N+ YSQ
Sbjct: 92 LASRSGALTGSRK---IILLDEVDGMDVRADAGGVEALVEVIKVSANPIIMTANNPYSQM 148
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
L+ L + F++ +++ L +I +AE L + AL+E+A R GD+R AIN L+
Sbjct: 149 LRPLRELSEMIAFKRLTPRDVVTVLKRICSAEKLVCEDQALDEIAKRSEGDLRSAINDLE 208
Query: 578 YMS-----LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMS 632
M+ ++L ++K S+ +D +P+ A+ KLF + R + +
Sbjct: 209 AMAGASERITLGLVKS-------FSTYRDRTYAPYEALQKLF---NSRYIFQAREAPTST 258
Query: 633 D--PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
D PD + I E+ Y + L I RA +++S D++ +I + W L
Sbjct: 259 DLTPDEFMVWINEHIPTY---------YEDLEEIVRAYDALSKADVYMGRIIKTNNWDL 308
>gi|15678268|ref|NP_275383.1| replication factor C large subunit [Methanothermobacter
thermautotrophicus str. Delta H]
gi|42559321|sp|O26342.1|RFCL_METTH RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit;
AltName: Full=MthRFC large subunit
gi|2621289|gb|AAB84746.1| replication factor C, large subunit [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 479
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 113/353 (32%), Positives = 171/353 (48%), Gaps = 56/353 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
++WTEKYRP + +E+VGNQ+++ ++ W+ W + GK Q K +L
Sbjct: 1 MSWTEKYRPGSFDEVVGNQKVIAEIKEWIKAW----------KAGKPQ------KPLLLV 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT A ++ + +E+NASD R + S G A++ + L +
Sbjct: 45 GPPGTGKTTLAHIIGKEFS-DTLELNASDRRSQDALMRSAG----EASATRSLFN----- 94
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
H ++I+DEVDG+ DRGG+ + IK S+ P++ ND YS++L+S+
Sbjct: 95 -------HDLKLIILDEVDGIHGNEDRGGVQAINRIIKESRHPMVLTANDPYSKRLQSIK 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
C L RK IA L +I AEG+E + L ELA R GD+R AIN L+ M+
Sbjct: 148 PRCRVLNLRKVHTSSIAAALRRICRAEGIECPDDVLRELAKRSRGDLRSAINDLEAMAEG 207
Query: 583 LSVIKYDDIRQRLLSSA-KDEDISPFTAVDKLF-GFNGGKLRMDERIDLSMSDPDLVPLL 640
+ I + LL KD + F AV + + K+R R+D DP LV
Sbjct: 208 -----EERIGEELLKMGEKDATSNLFDAVRAVLKSRDVSKVREAMRVD---DDPTLVLEF 259
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIF---NVQIRRNQQWQLS 690
I EN E ++ + I+RA + +S DIF V+ R W+ +
Sbjct: 260 IAENVPR---------EYEKPNEISRAYDMLSRADIFFGRAVRTRNYTYWRYA 303
>gi|222445468|ref|ZP_03607983.1| hypothetical protein METSMIALI_01107 [Methanobrevibacter smithii
DSM 2375]
gi|222435033|gb|EEE42198.1| replication factor C large subunit [Methanobrevibacter smithii DSM
2375]
Length = 492
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 166/337 (49%), Gaps = 52/337 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WT+KYRPKT +E+VGN + + W+ +WN + +K +L
Sbjct: 1 MLWTDKYRPKTLDEVVGNNKEKALIQKWVDNWNA----------------GNPQKPLLLV 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A+ + + + IE+NASD R + K + G ++S K L ++
Sbjct: 45 GPPGIGKTTLAQAIAREFS-EYIELNASDKRSQDVIKSTIG----ESSSSKSLFGDDY-- 97
Query: 464 ANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+LI+DEVDG+ DRGG+ + IK +K P+I I ND YS+++ SL
Sbjct: 98 ----------KLLILDEVDGIHGTNDRGGVRAIGDIIKKAKHPMILIANDFYSKRIASLK 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
C L+ K R I K L QIA EG++ N AL+ELA + NGD+R AIN Q ++
Sbjct: 148 TKCDVLKMSKVRSPSINKLLKQIAINEGIKANPAALKELAKKSNGDMRSAINTFQALANQ 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK--LRMDERIDLSMSDPDLVPLL 640
V++ DI + I+ TAV K N K L ++E DP LV
Sbjct: 208 NEVLELSDIENITTKDDRSTIINGVTAVLKSKNPNHVKKALMVEE-------DPTLVMEY 260
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIF 677
I EN R+ K+ I +A E+I+ D++
Sbjct: 261 IAEN--------IPREYTKKKE-IKKAYENIAKADLY 288
>gi|20093445|ref|NP_613292.1| replication factor C large subunit [Methanopyrus kandleri AV19]
gi|42559499|sp|Q8TZC5.1|RFCL_METKA RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|19886264|gb|AAM01222.1| Replication factor C (ATPase involved in DNA replication)
[Methanopyrus kandleri AV19]
Length = 510
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 169/353 (47%), Gaps = 43/353 (12%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP++ E+V + K+L W W + +A +L
Sbjct: 2 VPWVEKYRPRSLKELVNQDEAKKELAAWANEW--------------ARGSIPEPRAVLLH 47
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKT+AA + G+ IE+NASD R + I K +GG++ + ++ EA
Sbjct: 48 GPPGTGKTSAAYALAHDFGWDVIELNASDKRTRN--VIEKIVGGASTSRSLLRMTREAGG 105
Query: 464 ANMDRSKHPKTVLIM-DEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
H VL++ DEVDG+ DRGG+ L +++ ++ P++ + ND + KSL
Sbjct: 106 DYEHVEGHSDRVLVLVDEVDGIDPREDRGGVTALTRAVRQARNPMVLVANDPWVLP-KSL 164
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
+ + FR+ R +I + L +I EG+E E+AL +A R GD+R AIN L+ ++
Sbjct: 165 RDAVRMIEFRRLRVNDIVEALRRICEREGIEYEEVALRRIAKRARGDLRAAINDLEALAR 224
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLR-----MDERIDLSMSDPDL 636
+ DD+ +D++I+ F A+ ++F + R +DE DPD
Sbjct: 225 PTGRVTSDDVEA---LGWRDKEITIFEALGRIFNKPPRQARRALWNLDE-------DPDD 274
Query: 637 VPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
V L I +N A RD + IARA + +S D+F+ + W+
Sbjct: 275 VILWIAQNI-----PRAYRDPEE----IARAYDYLSKADVFSSRAIETGDWRF 318
>gi|261349970|ref|ZP_05975387.1| replication factor C large subunit [Methanobrevibacter smithii DSM
2374]
gi|288860753|gb|EFC93051.1| replication factor C large subunit [Methanobrevibacter smithii DSM
2374]
Length = 492
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 166/337 (49%), Gaps = 52/337 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WT+KYRPKT +E+VGN + + W+ +W + +K +L
Sbjct: 1 MLWTDKYRPKTLDEVVGNNKEKALIQKWVDNWKA----------------GNPQKPLLLV 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A+ + + + IE+NASD R + K + G ++S K L ++
Sbjct: 45 GPPGIGKTTLAQAIAREFS-EYIELNASDKRSQDVIKSTIG----ESSSSKSLFGDDY-- 97
Query: 464 ANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+LI+DEVDG+ DRGG+ + IK +K P+I I ND YS+++ SL
Sbjct: 98 ----------KLLILDEVDGIHGTNDRGGVRAIGDIIKKAKHPMILIANDFYSKRIASLK 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
C L+ K R I K L QIA EG++ N AL+ELA + NGD+R AIN Q ++
Sbjct: 148 TKCDVLKMSKVRSPSINKLLKQIAINEGIKANPAALKELAKKSNGDMRSAINTFQALANQ 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK--LRMDERIDLSMSDPDLVPLL 640
V++ +DI + I+ TAV K N K L ++E DP LV
Sbjct: 208 NEVLELNDIENITTKDDRSTIINGVTAVLKSKNPNHVKKALMVEE-------DPTLVMEY 260
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIF 677
I EN R+ K+ I +A E+I+ D++
Sbjct: 261 IAEN--------IPREYTKKKE-IKKAYENIAKADLY 288
>gi|148643237|ref|YP_001273750.1| replication factor C large subunit [Methanobrevibacter smithii ATCC
35061]
gi|158513781|sp|A5UMF4.1|RFCL_METS3 RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|148552254|gb|ABQ87382.1| replication factor C, large subunit, RfcL [Methanobrevibacter
smithii ATCC 35061]
Length = 492
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 165/337 (48%), Gaps = 52/337 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WT+KYRPKT +E+VGN + + W+ +W + +K +L
Sbjct: 1 MLWTDKYRPKTLDEVVGNNKEKALIQKWVDNWKA----------------GNPQKPLLLV 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A+ + + + IE+NASD R + K + G ++S K L ++
Sbjct: 45 GPPGIGKTTLAQAIAREFS-EYIELNASDKRSQDVIKSTIG----ESSSSKSLFGDDY-- 97
Query: 464 ANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+LI+DEVDG+ DRGG+ + IK +K P+I I ND YS+++ SL
Sbjct: 98 ----------KLLILDEVDGIHGTNDRGGVRAIGDIIKKAKHPMILIANDFYSKRIASLK 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
C L+ K R I K L QIA EG++ N AL+ELA + NGD+R AIN Q ++
Sbjct: 148 TKCDVLKMSKVRSPSINKLLKQIAINEGIKANPAALKELAKKSNGDMRSAINTFQALANQ 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK--LRMDERIDLSMSDPDLVPLL 640
V++ DI + I+ TAV K N K L ++E DP LV
Sbjct: 208 NEVLELSDIENITTKDDRSTIINGVTAVLKSKNPNHVKKALMVEE-------DPTLVMEY 260
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIF 677
I EN R+ K+ I +A E+I+ D++
Sbjct: 261 IAEN--------IPREYTKKKE-IKKAYENIAKADLY 288
>gi|159111709|ref|XP_001706085.1| Replication factor C, subunit 1 [Giardia lamblia ATCC 50803]
gi|157434178|gb|EDO78411.1| Replication factor C, subunit 1 [Giardia lamblia ATCC 50803]
Length = 890
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 144/596 (24%), Positives = 244/596 (40%), Gaps = 94/596 (15%)
Query: 183 FGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKK 242
+ R + E P G + L L FV +G L ++ + + + GG VT +VS +
Sbjct: 155 YNSRTNASVNYETLRPRGLVNSLSKLIFVRTGNLRTMSDTDFKLYVANLGGTVTTAVSGR 214
Query: 243 TNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMI----------------RASKPMK-- 284
T+YL+ +D K AK ++E +D++ + +P+
Sbjct: 215 TSYLVVGDDPGVTKIRDAKAKFVRIISEKEFYDLVVKKSGVPDWVPWVSFTESLQPLTTD 274
Query: 285 --ALAQAESKKSVEKVA--------ASLPKKSPQNIEAKSTSAPKA-----PIERMKTV- 328
A AE K E +L + +I +TS KA P ++ V
Sbjct: 275 ELADVIAEHNKQYESSGQGGAGEELVALGAIASSSIGDSATSTVKAENFDQPEKKTTGVQ 334
Query: 329 ASPAKRKGQ---------NIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF 379
S A R+ S L W K+ P + +VGN ++ QL WL W + F
Sbjct: 335 GSTASREEHEKHKELVRFQTPMSELDWLMKHTPTRISAVVGNNIMINQLRLWLTDWADVF 394
Query: 380 LD----------TGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429
++ G R K + KAA++SG G+GKT A L+ + + ++
Sbjct: 395 INKVPVESVLSSEGYARYNKGMGERFQFKAALVSGPSGIGKTLAVNLIVKESSYSPYYLS 454
Query: 430 ASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR 489
++ R K + + + I+ L + LS + LI+DE + M D
Sbjct: 455 VAEQRSKLSLQEALSDVFESCGIIRFLGGAQRLSRSTSNDSKTGLCLIIDECESM---DA 511
Query: 490 GGIADLIASI--KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
GG + L++ + + +++PII ICN+ + QKLK+L + C+ F +P+K I K L+ +A
Sbjct: 512 GGASYLLSVMNKESNRVPIIFICNNAHDQKLKTLRSKCALFPFERPQKDMIGKFLLSVAE 571
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPF 607
AE + + +A+RV D+R AIN+LQ+ + Y + LSS +P
Sbjct: 572 AENVSLQSGHASLIAERVRSDVRYAINELQFRTAGSKDSSYS---AKALSSLHIVTAAPT 628
Query: 608 TAVDKLFGFNGGKLRMDER------------------IDLSMSDPDLVPLLIQENYINYR 649
F L +D R I L M DP L I + NYR
Sbjct: 629 M-------FETWNLILDYRVLKQWVANTKQDGCYRSLITLHMGDPSLNTAGI---FQNYR 678
Query: 650 PSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALM 705
+AG LS + ++ +S + ++ W S+ ++ S ++P ++
Sbjct: 679 TKTAG-----LLSYTSVLSDLLSTSETMLARMMSVGDWSCSRDQAVFSAVLPNLIL 729
>gi|336122357|ref|YP_004577132.1| Replication factor C large subunit [Methanothermococcus okinawensis
IH1]
gi|334856878|gb|AEH07354.1| Replication factor C large subunit [Methanothermococcus okinawensis
IH1]
Length = 514
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 170/354 (48%), Gaps = 52/354 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRPKT E+VGN ++ ++L W+ E +L GK K +L
Sbjct: 1 MNWVEKYRPKTMAEVVGNTKIKEELKKWI----EDYL------QGKPV------KPVLLV 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT A + GF+ IE+NASD R N + IK++V + ++S
Sbjct: 45 GPPGCGKTTLANALANDYGFEIIELNASDKR--------------NKDVIKQVVGSASVS 90
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
++ + ++I+DEVDG+S DRGG+++++ IK +K PII ND Y L SL
Sbjct: 91 KSLS---GKRALIILDEVDGISGNSDRGGVSEILKIIKTAKNPIILTANDIYKPSLMSLR 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N C ++ I L +IA EG V++ L+ +A GD+R AIN L+ ++L
Sbjct: 148 NACKIVKIGSVHTNSIVPVLRRIALKEGFNVDDSVLKIIAKHAGGDVRAAINDLESLALG 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDI--SPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
+D+ + D D+ + F A+ +F + + D+ D V
Sbjct: 208 ------NDLNLEEVKELPDRDVEKNIFDAIRIIFKTTHYDIAVSSVYDVK-EDIGTVEEW 260
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
I EN P E K+ I RA + +S DIF ++ + Q + L + +S
Sbjct: 261 IAENI----PR-----EYKKKEDIVRAYDYLSKADIFLGRVYKRQYYGLWRYAS 305
>gi|374630528|ref|ZP_09702913.1| replication factor C large subunit [Methanoplanus limicola DSM
2279]
gi|373908641|gb|EHQ36745.1| replication factor C large subunit [Methanoplanus limicola DSM
2279]
Length = 497
Score = 135 bits (340), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 128/434 (29%), Positives = 206/434 (47%), Gaps = 77/434 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPKT +IVGN+ V+Q+ W W S ++ +L
Sbjct: 2 LDWVEKYRPKTLKDIVGNRSAVRQMVEWARKWE------------------SGKEPLLLY 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKT+AA + + ++ +E+NASD R K+ I + + GS A +
Sbjct: 44 GKPGIGKTSAAYALANDMEWEMLELNASDQRTKS---IIEKVAGSCATT----------- 89
Query: 464 ANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRY--SQKLKS 520
M S + +L+ DE D + + D+GG ++ IKISK PII I ND Y +++LKS
Sbjct: 90 --MSLSGAERKLLLFDEADNLHGSADKGGARAILDIIKISKQPIILIANDSYGIAKELKS 147
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ C ++FR + I+ L I + E L+ +E L E+A+ GD+R A+N+L S
Sbjct: 148 V---CEQVQFRALTAKTISDHLRDICSLEDLKCSESTLAEIAEGSGGDMRSALNKLYAAS 204
Query: 581 LSLSVIKYDDIRQRLLSSA-KDEDISPFTAVDKLFGFNGGKLRMDERIDLSMS-----DP 634
L D +R+ +S+A KDE S F V + K R D+R+ + +S P
Sbjct: 205 LG-----EDTLREAAVSTASKDERASIFDLVGSVL-----KSREDQRL-MQLSAEISETP 253
Query: 635 DLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
D++ I+E +S ++E KR A+A +S DI+ + Q + L + +S
Sbjct: 254 DVMSQWIEEG------ASYIQNEKKR----AQAYHYLSQSDIYIGRTFSRQYYTLWRYAS 303
Query: 695 LASCIIPAALMHGQRETLE-QGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSK 753
I A G+ + + + G + + + + F++L S K
Sbjct: 304 ALMLIGTAYAAEGEGISARIMPPSRWRKMAG--------ARKQKSIRNSVFNNL-SEKYH 354
Query: 754 LGRDTLRLDYFSLL 767
+ DTLR DY +L+
Sbjct: 355 MPADTLRDDYINLI 368
>gi|432328446|ref|YP_007246590.1| AAA ATPase [Aciduliprofundum sp. MAR08-339]
gi|432135155|gb|AGB04424.1| AAA ATPase [Aciduliprofundum sp. MAR08-339]
Length = 434
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 137/469 (29%), Positives = 211/469 (44%), Gaps = 85/469 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP+ +IVGN + + ++ W W + G R KA +L
Sbjct: 3 IPWVEKYRPRRFRDIVGNNKAINEILRWAQDW-----ERGKPRY----------KALVLV 47
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT AK++ + +G+ IE+NASD R N IKE+ A+
Sbjct: 48 GKPGCGKTTVAKVLAEEMGWGVIELNASDIR--------------NEQKIKEIALRGAVY 93
Query: 464 AN-------MDRSKHPKTVLIMDEVD----GMSAGDRGGIADLIASIKISKIPIICICND 512
+ K + ++I DE D G+ GDRGG + +IK ++ PII I ND
Sbjct: 94 ETFTDDGEFISSKKGGRKLIIFDEADNLYEGVKDGDRGGKKAIAETIKNTRQPIILIGND 153
Query: 513 RYS-------QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV 565
YS + LKSL +RF+ + +I K L +I AEG++ + AL +A R
Sbjct: 154 YYSLFSGTWGKALKSL---AYVIRFKALTRAQIMKVLKRICMAEGIKCQDTALAYIAGRS 210
Query: 566 NGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAV---DKLFGFNGGKLR 622
GD+R AIN LQ ++ ++ DD+ K+E V + +
Sbjct: 211 GGDLRAAINDLQALAQGKKILTEDDLGATGYRDVKNEIYKSTLVVLHTEHFWEAKNALTN 270
Query: 623 MDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIR 682
+DE PD V I+EN P + E + RA E +S D++ +++
Sbjct: 271 LDE-------TPDYVLFWIEEN----MPLEYTKPED-----LVRAYEYLSRADVYLGRVK 314
Query: 683 RNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDL 742
R QQ+ L + A +I A + G+ E +Q R + +F WL + S K +R + D
Sbjct: 315 RRQQYAL---WAYAMDMI-AGVSVGKEEKYKQHARRY-QFPSWLSQMSR-SKKVRGIRD- 367
Query: 743 HFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLP-KDELLRKLLSS 790
S KLGR + + +L + + VL KDE +R+L +S
Sbjct: 368 ------SLGMKLGR--IYHTSKNEVLDNVIQEFSVLYDKDEGVRRLYTS 408
>gi|15669074|ref|NP_247879.1| replication factor C large subunit [Methanocaldococcus jannaschii
DSM 2661]
gi|42559434|sp|Q58294.1|RFCL_METJA RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|1591562|gb|AAB98888.1| activator 1 (replication factor C), 53 KD subunit
[Methanocaldococcus jannaschii DSM 2661]
Length = 516
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 180/354 (50%), Gaps = 52/354 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L+W EKYRPK+ ++ G++++ ++L TW+ E +L T K +L
Sbjct: 2 LSWVEKYRPKSLKDVAGHEKVKEKLKTWI----ESYLKGET------------PKPILLV 45
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT A + GF+ IE+NASD R N+++IK++V + A S
Sbjct: 46 GPPGCGKTTLAYALANDYGFEVIELNASDKR--------------NSSAIKKVVGHAATS 91
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+++ K ++++DEVDG+S D GG+++LI IK +K PII ND Y+ ++SL+
Sbjct: 92 SSIFGKKF---LIVLDEVDGISGKEDAGGVSELIKVIKKAKNPIILTANDAYAPSIRSLL 148
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
Y ++ + K L +IA EGL+V++ L+ +A GD+R AIN L+ ++LS
Sbjct: 149 PYVEVIQLNPVHTNSVYKVLKKIAEKEGLDVDDKTLKMIAQHSAGDLRSAINDLEALALS 208
Query: 583 --LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
LS + Q+L ++ +I F A+ + + +++ + PD+V
Sbjct: 209 GDLSY----EAAQKLPDRKREANI--FDALRVILKTTHYGIATTALMNVDET-PDVVIEW 261
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
I EN P + E +ARA E +S D + ++ R Q + + ++
Sbjct: 262 IAENV----PKEYEKPEE-----VARAFEYLSKADRYLGRVMRRQNYSFWKYAT 306
>gi|304314451|ref|YP_003849598.1| replication factor C, large subunit [Methanothermobacter
marburgensis str. Marburg]
gi|302587910|gb|ADL58285.1| replication factor C, large subunit [Methanothermobacter
marburgensis str. Marburg]
Length = 470
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 174/353 (49%), Gaps = 56/353 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
++WTEKYRP+T E+ GNQ+ + ++ W++ W + G+ Q +L
Sbjct: 1 MSWTEKYRPRTFEEVAGNQKAIAEIKKWISGW----------KAGEPQ------PPLLLV 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT A ++ + +E+NASD R + DA I + G A++ + L +
Sbjct: 45 GPPGTGKTTMAHIIGREFS-DTLELNASDKRSQ-DA-IMRTAG--EASATRSLFN----- 94
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
H ++I+DEVDG+ DRGG+ + ++ S+ PI+ ND YS++L+S+
Sbjct: 95 -------HDLKLIILDEVDGIHGNEDRGGVQAINRILRESRHPIVLTANDPYSKRLQSIK 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
C + RK IA L +I AEG++ + L+ELA R +GD+R AIN L+ ++
Sbjct: 148 PKCKVINIRKVHTSSIAAALKRICRAEGIDCPDDVLKELAKRSHGDLRSAINDLEAVASG 207
Query: 583 LSVIKYDDIRQRLLSSA-KDEDISPFTAVDKLF-GFNGGKLRMDERIDLSMSDPDLVPLL 640
+ + + LLS KD + F AV + + K+R R+D DP LV
Sbjct: 208 -----EERVGEELLSMGEKDSTSNLFDAVRAVLKSRDFSKIREAMRVD---DDPTLVLEF 259
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIF---NVQIRRNQQWQLS 690
I EN E ++ I+RA + +S DIF V+ R W+ +
Sbjct: 260 IAENVPR---------EYEKPHEISRAYDMLSHADIFFGRAVRSRNYTYWRYA 303
>gi|254168911|ref|ZP_04875751.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
gi|197622175|gb|EDY34750.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
Length = 437
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 124/400 (31%), Positives = 178/400 (44%), Gaps = 66/400 (16%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRPK +IVGN Q + ++ W W E GK + KA IL
Sbjct: 3 IPWVEKYRPKRLRDIVGNTQAINEILRWAEEWEE----------GK-----PSYKALILV 47
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT A+ + +G+ IE+NASD R N IK++ A+
Sbjct: 48 GKPGCGKTTTARALANEMGWGVIELNASDVR--------------NEEKIKQIALRGAIY 93
Query: 464 ANM-DRSKHPKT------VLIMDEVD----GMSAGDRGGIADLIASIKISKIPIICICND 512
D K T ++I DE D G+ GDRGG ++ +IK SK PII I ND
Sbjct: 94 ETFTDDGKFISTRKGGRKLIIFDEADNLYEGVKDGDRGGKKAIVETIKASKQPIILIGND 153
Query: 513 RYSQKL----KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGD 568
YS K L + ++FR + +I K L +I AEG++ + L+ +A + GD
Sbjct: 154 YYSITSGTWGKVLKSVAKVVKFRAVNRAQIVKVLRRICAAEGIKCQDEVLKYIAGKSGGD 213
Query: 569 IRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERID 628
+R AIN LQ ++ V+ DD+ K+E + F K M +D
Sbjct: 214 LRAAINDLQAIAEGKKVVTEDDVAALGYRDVKNEIYKTTLVILHTEHFWEAK-SMLNNLD 272
Query: 629 LSMSDPDLVPLLIQENY-INY-RPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQ 686
PD V L I EN + Y +P + RA E +S D+ ++ R Q
Sbjct: 273 ---ETPDFVMLWIDENMPLEYTKPGD-----------LVRAYEYLSKADVLLGRVMRRQH 318
Query: 687 WQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWL 726
+ L S A +I AA+ + E ++ R +N F WL
Sbjct: 319 YAL---WSYAMDMI-AAVSVAKEEKYKKHPRRYN-FPSWL 353
>gi|150401783|ref|YP_001325549.1| replication factor C large subunit [Methanococcus aeolicus
Nankai-3]
gi|166225152|sp|A6UWR5.1|RFCL_META3 RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|150014486|gb|ABR56937.1| AAA ATPase central domain protein [Methanococcus aeolicus Nankai-3]
Length = 474
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 127/431 (29%), Positives = 199/431 (46%), Gaps = 68/431 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRPKT +EIVGN ++ ++L W+ E+ L K +L
Sbjct: 1 MNWVEKYRPKTMSEIVGNNKIKEELKNWI----EEILHN------------EIPKPVLLV 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT + GF+ IE+NASD R K I + +GG A+S K + L
Sbjct: 45 GPPGCGKTTLTNALANDYGFELIELNASDKRNKD--IIRQIVGG--ASSSKSITGKRVL- 99
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+++DEVDG+S DRGG++++I IK +K PII ND Y L SL
Sbjct: 100 ------------IVLDEVDGLSGNSDRGGVSEIIKIIKNAKNPIILTANDIYKPSLMSLR 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
C+ ++ I L +I+ EG EV++ L+ +A GD+R AIN L+ +++
Sbjct: 148 TVCNIVKIGSVHTNSIVPVLRRISLKEGFEVDDKILKIIAKHAGGDVRSAINDLESLAMG 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ D++R+ +D D S F A+ +F + ++ DL D V I
Sbjct: 208 -NTFDEDNVREL---PDRDTDKSIFDAIRIIFKTTHYDISLEATRDLK-EDIGTVQEWIA 262
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQ-SSSLASCIIP 701
EN P E K+ I A +++S DIF ++ + Q + L + +S+L S +
Sbjct: 263 ENV----PR-----EYKKGKEICLAYDNLSKADIFLGRVYKRQYYGLWRYASALMSAGVS 313
Query: 702 AA-------LMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSK 753
A R T+ F + GK + K +LE + H++ R+++
Sbjct: 314 LAKDEKYRGFFSYMRPTI------FTKMSRSKGKRGAVNK---VLEKISLKSHVSKRRAR 364
Query: 754 LGRDTLRLDYF 764
D L L+Y
Sbjct: 365 --EDILYLEYI 373
>gi|261403496|ref|YP_003247720.1| replication factor C large subunit [Methanocaldococcus vulcanius
M7]
gi|261370489|gb|ACX73238.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
Length = 509
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 104/345 (30%), Positives = 181/345 (52%), Gaps = 48/345 (13%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L+W EKYRP++ ++ G++++ ++L TW+ E +L K +N K +L
Sbjct: 2 LSWVEKYRPRSLKDVAGHEKVKEKLKTWI----ESYL--------KGEN----PKPILLV 45
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT A + GF+ IE+NASD R N+++IK++V + A S
Sbjct: 46 GPPGCGKTTLAYALANDYGFEVIELNASDKR--------------NSSAIKKVVGHAATS 91
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+++ K ++++DEVDG+S D GG+++LI IK +K PII ND Y+ ++SL+
Sbjct: 92 SSIFGKKF---LIVLDEVDGISGKEDAGGVSELIKIIKKAKNPIILTANDAYATSIRSLL 148
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
Y ++ I K L +IA EGL+V++ L+ +A GD+R AIN L+ ++LS
Sbjct: 149 PYVEIIQLNPVHTNSIYKVLKKIAQKEGLDVDDKTLKMIAQHSAGDLRSAINDLEALALS 208
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ Y+ + Q+L ++ +I F A+ + + +++ + PD++ I
Sbjct: 209 -GDLSYETV-QKLPDRKREANI--FDALRVILKTTHYGIATTALMNVDET-PDVIIEWIA 263
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
EN P E ++ +ARA E +S D + ++ + Q +
Sbjct: 264 ENV----PK-----EYEKAEEVARAFEYLSKADRYLGRVMKRQNY 299
>gi|296241870|ref|YP_003649357.1| replication factor C large subunit [Thermosphaera aggregans DSM
11486]
gi|296094454|gb|ADG90405.1| replication factor C large subunit [Thermosphaera aggregans DSM
11486]
Length = 430
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 167/353 (47%), Gaps = 54/353 (15%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
S+L W KYRP+T ++V + WL +W + G+K KA +
Sbjct: 3 SALPWIIKYRPRTIEDVVNQEDAKNAFLNWLENWG---------KPGQK-------KAVL 46
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKAD----AKISKGIGGSNANSIKELV 457
L G G GKT+ + V + G+Q E+NASD R K+D AKI+ G
Sbjct: 47 LHGPAGCGKTSLVEAVARSKGYQLFEMNASDFRRKSDIESIAKIAAQTSGLTGK------ 100
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQ 516
+ ++++DEVDG++A D GGI +I I +SK PI+ N+ YS+
Sbjct: 101 ---------------RKIILLDEVDGINARADEGGIEAIIELINVSKNPIVMTANNPYSK 145
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
L L ++ ++ + + L +I AE +E ++ AL E+A R GD+R AIN L
Sbjct: 146 NLLPLRQNVLEIPMKRLSETHVVTALKKICGAEKIECSDEALREIAKRSEGDLRSAINDL 205
Query: 577 QYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDL 636
Q ++ + + + ++ L++ +D +P+ A+ +LF K + L+ +D D
Sbjct: 206 QAIAETYGKVTLELVKS--LATYRDRQYAPYEALQRLF---NAKYVFQAKDALTSTDLDY 260
Query: 637 VPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
L + N + P+ E +ARA E++S D++ +I+ QW L
Sbjct: 261 DELFLWLN--EHIPTYYEDPEE-----VARAYEALSRADVYYGRIKSRGQWDL 306
>gi|448346404|ref|ZP_21535289.1| replication factor C large subunit [Natrinema altunense JCM 12890]
gi|445632607|gb|ELY85818.1| replication factor C large subunit [Natrinema altunense JCM 12890]
Length = 499
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 146/302 (48%), Gaps = 43/302 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + QL W W++ K+ I+ GS
Sbjct: 4 WTEKYRPTTLSEVRGNNKARDQLEEWAESWDDH------------------RKSVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+++ A S
Sbjct: 46 PGVGKTSAAHALAADMGWPVMELNASDSRG--------------ADVIEKIAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++++DE D D GG ++ +K + PI+ + N+ Y KSL N
Sbjct: 92 LTGGEAGRRLVVLDEADNFHGNADYGGSREVTRVVKDANQPIVLVANEFYEMS-KSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I EG+E E ALE++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREGVEFEEGALEKIAESTSGDLRSAVNDLQAVAEETE 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++S +D F +D+L G LR +D + PD + I+
Sbjct: 211 RLTVDDV----VTSERDTTEGIFDFLDELIKEKDAEGALRASYDVDET---PDDLLNWIE 263
Query: 643 EN 644
+N
Sbjct: 264 DN 265
>gi|308160758|gb|EFO63231.1| Replication factor C, subunit 1 [Giardia lamblia P15]
Length = 887
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 113/448 (25%), Positives = 197/448 (43%), Gaps = 55/448 (12%)
Query: 183 FGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKK 242
+ R + E P G L L FV +G L ++ + + + GG VT +VS +
Sbjct: 155 YNSRTNASVNYETLRPRGLVSSLSKLIFVRTGNLRTMSDTDFKLYVTNLGGTVTTAVSGR 214
Query: 243 TNYLLCDEDIAGAK--STKAKEL-----------------------GTPF------LTED 271
T+YL+ +D K KAK + PF T D
Sbjct: 215 TSYLVVGDDPGATKIRDAKAKFVRIISEKEFYNLVVKKSDIPDWVPWVPFTESLQPFTAD 274
Query: 272 GLFDMI-RASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVAS 330
L D+I +K ++L + + + + + A L +I + + + +E+ A
Sbjct: 275 ELADVIAEHNKQHESLDRGGAGEELVALGAILSPSVGDSITSTAKADNSDQLEKKTVGAQ 334
Query: 331 PAKRKGQN--------IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLD- 381
+ G++ + S L W K+ P + +VGN ++ QL WL +W + F++
Sbjct: 335 GSIAVGEDHETPVPLQLPVSELDWVMKHTPTRISAVVGNNIVINQLRLWLTNWTDVFMNK 394
Query: 382 ---------TGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432
+ K + KAA++SGS G+GKT A L+ + + ++ ++
Sbjct: 395 RSVESILSSEAYTKYSKGMEERFQFKAALVSGSSGIGKTLAVNLIVKESNYSPYYLSVAE 454
Query: 433 SRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGI 492
R K + + + I L + L + LI+DE + M D GG
Sbjct: 455 QRSKLSLQETLADVFESCGIISFLGGAQRLGKPTNNDSKTGICLIIDECESM---DAGGA 511
Query: 493 ADLIASI--KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEG 550
+ L++ + + +++PII ICN+ + QKLK+L N C+ F +P+K I K L+ +A AEG
Sbjct: 512 SYLLSVMNKESNRVPIIFICNNAHDQKLKTLRNKCAMFPFERPQKDMIGKFLLSVAEAEG 571
Query: 551 LEVNEIALEELADRVNGDIRMAINQLQY 578
+ + +A+RV D+R AIN+LQ+
Sbjct: 572 ISLQFGHAGLIAERVRSDVRYAINELQF 599
>gi|448339295|ref|ZP_21528323.1| replication factor C large subunit [Natrinema pallidum DSM 3751]
gi|445620524|gb|ELY74020.1| replication factor C large subunit [Natrinema pallidum DSM 3751]
Length = 500
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 146/302 (48%), Gaps = 43/302 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + QL W W++ K+ I+ GS
Sbjct: 4 WTEKYRPTTLSEVRGNNKARDQLEEWAESWDDH------------------RKSVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+++ A S
Sbjct: 46 PGVGKTSAAHALATDMGWPVMELNASDSRG--------------ADVIEKIAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++++DE D D GG ++ +K + PI+ + N+ Y KSL N
Sbjct: 92 LTGGEAGRRLVVLDEADNFHGNADYGGSREVTRVVKDANQPIVLVANEFYDMS-KSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I EG+E E ALE++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREGVEFEEGALEKIAESTSGDLRSAVNDLQAVAEEAE 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++S +D F +D+L G LR +D + PD + I+
Sbjct: 211 RLTVDDV----VTSERDTTEGIFDFLDELIKEKDAEGALRASYDVDET---PDDLLNWIE 263
Query: 643 EN 644
+N
Sbjct: 264 DN 265
>gi|448330039|ref|ZP_21519331.1| replication factor C large subunit [Natrinema versiforme JCM 10478]
gi|445612820|gb|ELY66538.1| replication factor C large subunit [Natrinema versiforme JCM 10478]
Length = 504
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 145/302 (48%), Gaps = 43/302 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + +L W W+E K+ I+ GS
Sbjct: 4 WTEKYRPTTLSEVRGNNKARDKLEEWAESWDEH------------------RKSVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+++ A S
Sbjct: 46 PGIGKTSAAHALAADMGWPVMELNASDSRG--------------ADVIEKVAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++I+DE D D GG ++ +K + PI+ + N+ Y KSL N
Sbjct: 92 LTGGEAGRRLVILDEADNFHGNADYGGSREVTRVVKDANQPIVLVANEFYDMS-KSLRNS 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I EG+E E ALE++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREGVEFEEDALEKIAESTSGDLRSAVNDLQAVAEETE 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++ +D F +D+L G LR +D + PD + I+
Sbjct: 211 RLTVDDV----VTGQRDTTEGIFDFLDELIKEKDAEGALRASYDVDET---PDDLLNWIE 263
Query: 643 EN 644
+N
Sbjct: 264 DN 265
>gi|315425404|dbj|BAJ47069.1| replication factor C large subunit [Candidatus Caldiarchaeum
subterraneum]
gi|343484217|dbj|BAJ49871.1| replication factor C large subunit [Candidatus Caldiarchaeum
subterraneum]
Length = 409
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 165/345 (47%), Gaps = 51/345 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEK+RP+ +EIVGN++ V+ W+A W + GK ++KAA+L G
Sbjct: 5 WTEKHRPRKVSEIVGNKEAVQAFLEWMAGWEK----------GK-----PSKKAALLYGP 49
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
G+GKT+ G++ IE NASD R + + I + +G ++ + S
Sbjct: 50 AGVGKTSLVHAYASEKGYEVIETNASDFRTREN--IERIVGAASGMA----------SLT 97
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
M + K ++++DEVDG+ A D G + L I + +P++ + ND + +L L +
Sbjct: 98 MGQRK----IILVDEVDGIDARADAGAVTSLADIISKTHVPVVLVANDPWDPRLAPLRDA 153
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C ++FR+ K +A L +IA AE + V E L + + GD+R AIN LQ S +L
Sbjct: 154 CLMIQFRRIPKPSVAAHLKKIAAAENVRVPEDVLRRIVENSEGDLRSAINDLQMASAALE 213
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
+ L++ ++D FTA+ +F + ++ + +L+ +++
Sbjct: 214 M--------GLVTGSRDRKDEIFTALATIFNAKSFNTAQEAARNIDIDHSELMQWILENA 265
Query: 645 YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
P+ +A A E+++ D++ +I Q WQL
Sbjct: 266 PQQLSPTD-----------LAEALENLAKADLYLQRINTRQNWQL 299
>gi|256811408|ref|YP_003128777.1| replication factor C large subunit [Methanocaldococcus fervens
AG86]
gi|256794608|gb|ACV25277.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
Length = 488
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 134/240 (55%), Gaps = 34/240 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L+W EKYRPK+ E+ G+ ++ ++L TW+ E +L + +N K +L
Sbjct: 2 LSWVEKYRPKSLKEVAGHDKVKERLKTWI----ESYL--------RGEN----PKPILLV 45
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT A + GF+ IE+NASD R NA+SIK++V + A S
Sbjct: 46 GPPGCGKTTLAYALANDYGFEVIELNASDKR--------------NASSIKKVVGHAATS 91
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+++ K ++++DEVDG+S D GG+++LI IK +K PII ND Y+ +++L+
Sbjct: 92 SSVFGKKF---LIVLDEVDGISGKEDAGGVSELIKVIKKAKNPIILTANDAYATSIRNLL 148
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
Y ++ + K L +IA EGL V++ L+ +A GD+R AIN L+ ++LS
Sbjct: 149 PYVEVIQLNPVHTNSVYKVLKKIAEKEGLNVDDKILKMIAQHSAGDLRSAINDLEALALS 208
>gi|315427366|dbj|BAJ48976.1| replication factor C large subunit [Candidatus Caldiarchaeum
subterraneum]
Length = 409
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 165/345 (47%), Gaps = 51/345 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEK+RP+ +EIVGN++ V+ W+A W + GK ++KAA+L G
Sbjct: 5 WTEKHRPRKVSEIVGNKEAVQAFLEWMAGWEK----------GK-----PSKKAALLYGP 49
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
G+GKT+ G++ IE NASD R + + I + +G ++ + S
Sbjct: 50 AGVGKTSLVHAYAYEKGYEVIETNASDFRTREN--IERIVGAASGMA----------SLT 97
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
M + K ++++DEVDG+ A D G + L I + +P++ + ND + +L L +
Sbjct: 98 MGQRK----IILVDEVDGIDARADAGAVTSLADIISKTHVPVVLVANDPWDPRLAPLRDA 153
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C ++FR+ K +A L +IA AE + V E L + + GD+R AIN LQ S +L
Sbjct: 154 CLMIQFRRIPKPSVAAHLKKIAAAENVRVPEDVLRRIVENSEGDLRSAINDLQMASAALE 213
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
+ L++ ++D FTA+ +F + ++ + +L+ +++
Sbjct: 214 M--------GLVTGSRDRKDEIFTALATIFNAKSFNTAQEAARNIDIDHSELMQWILENA 265
Query: 645 YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
P+ +A A E+++ D++ +I Q WQL
Sbjct: 266 PQQLSPTD-----------LAEALENLAKADLYLQRINTRQNWQL 299
>gi|254166710|ref|ZP_04873564.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
gi|289596184|ref|YP_003482880.1| ATPase AAA [Aciduliprofundum boonei T469]
gi|197624320|gb|EDY36881.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
gi|289533971|gb|ADD08318.1| AAA ATPase central domain protein [Aciduliprofundum boonei T469]
Length = 437
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 124/403 (30%), Positives = 179/403 (44%), Gaps = 72/403 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRPK +IVGN Q + ++ W W GK + KA IL
Sbjct: 3 IPWVEKYRPKRLRDIVGNTQAINEILRWAEEWEA----------GK-----PSYKALILV 47
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT A+ + +G+ IE+NASD R N IK++ A+
Sbjct: 48 GKPGCGKTTTARALANEMGWGVIELNASDVR--------------NEEKIKQIALRGAIY 93
Query: 464 ANM-DRSKHPKT------VLIMDEVD----GMSAGDRGGIADLIASIKISKIPIICICND 512
D K T ++I DE D G+ GDRGG ++ +IK SK PII I ND
Sbjct: 94 ETFTDDGKFISTRKGGRKLIIFDEADNLYEGVKDGDRGGKKAIVETIKASKQPIILIGND 153
Query: 513 RYS-------QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV 565
YS + LKS+ ++FR + +I K L +I AEG++ + L+ +A +
Sbjct: 154 YYSITGGTWGKVLKSVAKV---VKFRAVNRAQIVKVLRRICAAEGIKCQDEVLKYIAGKS 210
Query: 566 NGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDE 625
GD+R AIN LQ ++ V+ DD+ K+E + F K M
Sbjct: 211 GGDLRAAINDLQAIAEGKKVVTEDDVAALGYRDVKNEIYKTTLVILHTEHFWEAK-SMLN 269
Query: 626 RIDLSMSDPDLVPLLIQENY-INY-RPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRR 683
+D PD V L I EN + Y +P + RA E +S D+ ++ R
Sbjct: 270 NLD---ETPDFVMLWIDENMPLEYTKPGD-----------LVRAYEYLSKADVLLGRVMR 315
Query: 684 NQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWL 726
Q + L S A +I AA+ + E ++ R +N F WL
Sbjct: 316 RQHYAL---WSYAMDMI-AAVSVAKEEKYKKHPRKYN-FPSWL 353
>gi|116753783|ref|YP_842901.1| replication factor C large subunit [Methanosaeta thermophila PT]
gi|121693813|sp|A0B6D7.1|RFCL_METTP RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|116665234|gb|ABK14261.1| replication factor C large subunit [Methanosaeta thermophila PT]
Length = 467
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/379 (27%), Positives = 174/379 (45%), Gaps = 56/379 (14%)
Query: 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSG 404
+W EKYRPK + I+GN + V +L W W + G+ + K IL G
Sbjct: 3 SWAEKYRPKNLDGILGNAKAVSELRAWAMAWEK----------GRPEV-----KCLILYG 47
Query: 405 SPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA 464
PG+GKT+AA + + + IE+NASD R A+I K I G ++
Sbjct: 48 PPGVGKTSAALALASEMDWDYIELNASDQR---TAEIIKSIAGP--------------AS 90
Query: 465 NMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
+ + ++I+DE D + DRGG A ++ IK + P+I I N+ Y+ + K L +
Sbjct: 91 QVSTFSGRRRLVILDEADNLHGTYDRGGAAAILRVIKNATQPVILIANEYYNIE-KPLRD 149
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
C ++FR R Q IA L +I +EG+E A+ +A GD+R AIN L+ + L
Sbjct: 150 ACRGVQFRSIRAQTIASLLREICRSEGIECEPEAVMHIAAMSGGDLRSAINDLEAAARGL 209
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQE 643
++ +D+ +S +D S F +D +F + ++ L S DL+ + +
Sbjct: 210 KHLRLEDV----ATSERDVKASIFRVLDSIFKGEDSRSALEATYQLDESPEDLIHWIDEN 265
Query: 644 NYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAA 703
I Y+ +A+ E +S DIF ++RR Q + L + ++
Sbjct: 266 LPIVYKDRE-----------LAKGFECLSRADIFLGRVRRRQNYTLWRYAAF-------L 307
Query: 704 LMHGQRETLEQGERNFNRF 722
+ G R + R + +F
Sbjct: 308 MTGGVRAVSSKVRRGYTQF 326
>gi|328767345|gb|EGF77395.1| hypothetical protein BATDEDRAFT_27550 [Batrachochytrium
dendrobatidis JAM81]
Length = 1211
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 128/284 (45%), Gaps = 64/284 (22%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI---- 401
W +KYRPK ++VG++QL +Q+ TW+ W+ KR N + K ++
Sbjct: 540 WVDKYRPKMYVDMVGDEQLNRQVLTWVKQWDYCVFGKPVKRTLATMNQSQFRKKSLFDQH 599
Query: 402 ------------------LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISK 443
L G PG+GKTT A +V G+ +E+NASD R A K
Sbjct: 600 KASVPVDKLQRPDRRILFLCGPPGLGKTTLAHVVAHHAGYNVVEINASDDRTTAVLK--- 656
Query: 444 GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG--DRGGIADLIASIKI 501
+ I V ++A+ N K P V+I DE+DG++AG D+ I LI +
Sbjct: 657 -------DKIISAVESQAVMGN----KKPNLVII-DEIDGVNAGGGDQAFIKMLIKLTET 704
Query: 502 S-------------------------KIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQ 536
+ PIICICND+Y+Q L+ L FR P Q
Sbjct: 705 KDSAEDSDFKSSKKVTKLKKKVQRQLRRPIICICNDQYAQVLRPLRQVAQVFTFRPPPFQ 764
Query: 537 EIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+AKRL +I EGL + + L + GD+R AI+ LQ++S
Sbjct: 765 ALAKRLYEICRWEGLHADLRTMMALCEMTQGDMRSAIHTLQFLS 808
>gi|289192746|ref|YP_003458687.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
gi|288939196|gb|ADC69951.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
Length = 515
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 177/354 (50%), Gaps = 52/354 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L+W EKYRPK+ E+ G+ ++ ++L TW+ E +L K +L
Sbjct: 2 LSWVEKYRPKSLKEVAGHDKVKEKLKTWI----ESYLK------------GEHPKPILLV 45
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT A + GF+ IE+NASD R +A+ IK++V + A S
Sbjct: 46 GPPGCGKTTLAYALANDYGFEVIELNASDKR--------------SASVIKKVVGHAATS 91
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+++ K ++I+DEVDG+S D GG+++LI IK +K PII ND Y+ +++L+
Sbjct: 92 SSIFGKKF---LIILDEVDGISGKEDAGGVSELIKVIKKAKNPIILTANDAYAPAIRNLL 148
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
Y ++ + K L +IA EGL+V++ L+ +A GD+R AIN L+ ++LS
Sbjct: 149 PYVEVIQLNPVHTNSVYKVLKKIAQKEGLDVDDKTLKMIAQHSAGDLRSAINDLEALALS 208
Query: 583 --LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
LS + Q+L ++ +I F A+ + + +++ + PD+V
Sbjct: 209 GDLSY----EAAQKLPDRKREANI--FDALRVILKTTHYGIATTALMNVDET-PDVVIEW 261
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
I EN P + E +ARA E +S D + ++ R Q + + ++
Sbjct: 262 IAENV----PKEYEKPEE-----VARAFEYLSKADRYLGRVMRRQNYSFWKYAT 306
>gi|296108938|ref|YP_003615887.1| ATPase AAA [methanocaldococcus infernus ME]
gi|295433752|gb|ADG12923.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
Length = 483
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 178/354 (50%), Gaps = 52/354 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP++ ++VG++++ ++L W+ E F+ GKK EK +L
Sbjct: 2 LNWIEKYRPRSLKDVVGHEKVKERLKRWI----ESFI------KGKK------EKPILLY 45
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A + GF IE+NASD R + + + G + K ++ N
Sbjct: 46 GPPGVGKTTLAYALANDYGFDVIELNASDRRSREEIRRIIGQSAVS----KSILGN---- 97
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ ++++DEVDG+S D GG+ +LI K SK PII ND YS LK+L+
Sbjct: 98 ---------RFIIVLDEVDGISGKEDAGGVGELIKIAKESKNPIIMTANDAYSPNLKNLL 148
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
+ + + + EI K L IA EGL+V++ L+ +A GD+R AIN LQ ++LS
Sbjct: 149 PHVELIELKPLKVNEIYKILKAIAEKEGLDVDDKVLKVIASHSAGDLRSAINDLQALALS 208
Query: 583 --LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
L++ + + +R + + + F A+ + K+ ID+ + PD++
Sbjct: 209 GDLTIEAVESLPER------NREKNIFDALRIILKTTNYKVATTALIDVDET-PDVIIEW 261
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
+ EN I Y E ++L I RA + +S D+F + R Q + + ++
Sbjct: 262 LAEN-IPY--------EYEKLEEIERAYDYLSKADLFLGRAVRRQNYSFWKYAT 306
>gi|392573390|gb|EIW66530.1| hypothetical protein TREMEDRAFT_34848, partial [Tremella
mesenterica DSM 1558]
Length = 696
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 136/276 (49%), Gaps = 38/276 (13%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGT---KRNGKKQNDASAE 397
Q+ W +KYRPK ++++G ++ +++ WL W++ T KR +Q + +
Sbjct: 82 QAPSMWVDKYRPKKFSDLLGEDRVHREVLGWLKEWDKCVFRRVTQVKKRRFDEQENLPID 141
Query: 398 -------KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNA 450
+ +LSG PG GKTT A +V + G++ +E+NASD R +A
Sbjct: 142 PLGRPRDRILLLSGPPGYGKTTLAHIVAKQAGYKTLEINASDDR--------------SA 187
Query: 451 NSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASI---------- 499
++ + N + + S+ T +++DE+DG S G D I L+ I
Sbjct: 188 ATVTSRIKNAIDAGSGLSSQGRPTCVVIDEIDGASGGGDTSFIRSLVKLIQDVPARRKNN 247
Query: 500 ---KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEI 556
K + PIICICND Y+ L+ L + +RFRKP+ Q + KRL +I + E L +
Sbjct: 248 VPAKPLRRPIICICNDLYASALRPLRPFARIIRFRKPQAQFVVKRLREICDKEALSADLR 307
Query: 557 ALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIR 592
L L D GD+R +N LQ++ S++ + IR
Sbjct: 308 VLTNLVDVTAGDVRSCLNTLQFIKSRSSIVTDEAIR 343
>gi|119719184|ref|YP_919679.1| replication factor C large subunit [Thermofilum pendens Hrk 5]
gi|150415669|sp|A1RWU6.1|RFCL_THEPD RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|119524304|gb|ABL77676.1| replication factor C large subunit [Thermofilum pendens Hrk 5]
Length = 413
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 167/348 (47%), Gaps = 50/348 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP ++VGN++ K+ W+ W + GK ++KAA+L G
Sbjct: 11 WTEKYRPARIADVVGNEEAKKKYVAWINSWVK----------GK-----PSKKAALLYGP 55
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG GKT+ + ++ IE+NASD R + +A + +G N S+
Sbjct: 56 PGSGKTSIVHATAKEFSWELIELNASDVRTR-EALQQRLLGALNTRSV------------ 102
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ ++++DEVDG+S D GG+ ++ I+ S PI+ ND + KL+ L +
Sbjct: 103 ---LGYSGKIILLDEVDGISTKEDAGGLQAIVELIEKSNWPIVLTANDPWDPKLRPLRDL 159
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + F+K K++I K L I + EG+E + L +AD GD+R AIN LQ +++
Sbjct: 160 CELIEFKKIGKRDIMKVLENICSKEGVECSREVLSAIADNAKGDLRAAINDLQSLAMGKK 219
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFG--FNGGKLRMDERIDLSMSDPDLVPLLIQ 642
I D+ Q L A+ E I F V + + L + L D +++ +
Sbjct: 220 TISLADL-QILGDRAEQETI--FDIVRSVLTAKYPEQALAVTR---LPSLDYEMLMQWLS 273
Query: 643 ENYI-NYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
EN + Y PS L IA A +++S DI +++R QQW L
Sbjct: 274 ENIVYQYEPS---------LQAIADAYDALSWADIMLTRMKREQQWAL 312
>gi|336252282|ref|YP_004595389.1| Replication factor C large subunit [Halopiger xanaduensis SH-6]
gi|335336271|gb|AEH35510.1| Replication factor C large subunit [Halopiger xanaduensis SH-6]
Length = 511
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 142/302 (47%), Gaps = 43/302 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + QL W W+E A I+ GS
Sbjct: 4 WTEKYRPTTLSEVRGNNKARDQLEEWAETWDEH------------------RDAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+ + + S
Sbjct: 46 PGVGKTSAAHALAADMGWPVMELNASDSRG--------------ADVIERVAGEASKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++I+DE D D GG ++ +K + PI+ + N+ Y SL N
Sbjct: 92 LTGGESGRRLVILDEADNFHGNADYGGSREVTRVVKNANQPIVLVANEFYDMS-NSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I EG+E E ALE++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREGVEFEEEALEKIAESTSGDLRSAVNDLQAVAEDTE 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++S +D F +D L G LR +D +PD + I+
Sbjct: 211 RLTVDDV----VTSERDTTEGIFDFLDTLIKEEDAEGALRASYDVD---ENPDEMLNWIE 263
Query: 643 EN 644
+N
Sbjct: 264 DN 265
>gi|320100774|ref|YP_004176366.1| replication factor C large subunit [Desulfurococcus mucosus DSM
2162]
gi|319753126|gb|ADV64884.1| replication factor C large subunit [Desulfurococcus mucosus DSM
2162]
Length = 425
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 166/356 (46%), Gaps = 53/356 (14%)
Query: 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK 398
+ + W KYRP+T E ++ ++L WL W + +K
Sbjct: 1 MSHQRVPWVIKYRPRTLEEFEDQEEAKEKLIAWLESW---------------EKGVPGKK 45
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
AA+L G PG GKT+ + V + G+Q E+NASD+R K D I +V
Sbjct: 46 AALLHGPPGCGKTSLVEAVARSKGYQLFEMNASDARRKED--------------IDRIVK 91
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQK 517
+ S + S+ ++++DEVDGM D GGI L+ IK + PII N+ YSQ
Sbjct: 92 LASRSGALTGSRK---IILLDEVDGMDPRADAGGIEALVEVIKATANPIIMTANNPYSQA 148
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
L+ L + F++ + + K L +I AE L + AL E+A R GD+R AIN L+
Sbjct: 149 LRPLRELSEVIGFKRLSESVVVKVLKKICGAEKLFCEDEALREIARRSEGDLRSAINDLE 208
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG----FNGGKLRMDERIDLSMSD 633
++ + + +++ LS+ ++ +P+ A+ KLF F + DL+
Sbjct: 209 ALAGLSGGVTVNAVKE--LSTYRNRVYAPYEALQKLFNARYIFQAKEYATS--TDLA--- 261
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
PD + I E+ Y +EV ARA +++S D++ +I R Q W L
Sbjct: 262 PDEFIIWINEHIPTYYEDP---EEV------ARAYDALSRADVYMGRIVRTQNWDL 308
>gi|145343741|ref|XP_001416470.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576695|gb|ABO94763.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 114
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 84/113 (74%)
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
+ KT LIMDEVDGM+ GDRGGI++LI IK ++IPIICICNDRYSQKLK+L NYC DL
Sbjct: 2 RSTKTALIMDEVDGMAGGDRGGISELIEVIKHTRIPIICICNDRYSQKLKTLANYCVDLP 61
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
F++P K ++ K L QI ++ L+V+ A++ L + N D+R +INQLQ +S
Sbjct: 62 FQRPNKLQLRKYLNQIVASQRLDVDSDAVDALIEANNNDLRSSINQLQLWGMS 114
>gi|433590863|ref|YP_007280359.1| AAA ATPase [Natrinema pellirubrum DSM 15624]
gi|448331730|ref|ZP_21520981.1| replication factor C large subunit [Natrinema pellirubrum DSM
15624]
gi|433305643|gb|AGB31455.1| AAA ATPase [Natrinema pellirubrum DSM 15624]
gi|445628689|gb|ELY81992.1| replication factor C large subunit [Natrinema pellirubrum DSM
15624]
Length = 498
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 146/302 (48%), Gaps = 43/302 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + QL W W++ ++ I+ GS
Sbjct: 4 WTEKYRPTTLSEVRGNNKARDQLEEWAETWDDH------------------RESVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+++ + S
Sbjct: 46 PGVGKTSAAHALANDMGWPVMELNASDSRG--------------ADVIEKIAGEASKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++I+DE D D GG ++ +K + PI+ + N+ Y +SL N
Sbjct: 92 LTAGESGRRLVILDEADNFHGNADYGGSREVTRVVKDANQPIVLVANEFYEMS-QSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L + EG+E E ALE++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDVCRREGIEFEEEALEKIAESTSGDLRSAVNDLQAVAEEAE 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++S +D F +D+L G LR +D + PD + I+
Sbjct: 211 RLTVDDV----VTSERDTTEGIFDFLDELIKEKDAEGALRASYDVDET---PDDLLNWIE 263
Query: 643 EN 644
+N
Sbjct: 264 DN 265
>gi|448385340|ref|ZP_21563846.1| replication factor C large subunit [Haloterrigena thermotolerans
DSM 11522]
gi|445656835|gb|ELZ09667.1| replication factor C large subunit [Haloterrigena thermotolerans
DSM 11522]
Length = 496
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 146/302 (48%), Gaps = 43/302 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + QL W W++ ++ I+ GS
Sbjct: 4 WTEKYRPTTLSEVRGNNKARDQLAEWAETWDDH------------------RESVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+++ + S
Sbjct: 46 PGVGKTSAAHALANDMGWPVMELNASDSRG--------------ADVIEKIAGEASKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++I+DE D D GG ++ +K + PI+ I N+ Y +SL N
Sbjct: 92 LTAGESGRRLVILDEADNFHGNADYGGSREVTRVVKDANQPIVLIANEFYDMS-QSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L + EG+E E ALE++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDVCRREGIEFEEEALEKIAESTSGDLRSAVNDLQAVAEEAE 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++S +D F +D+L G LR +D + PD + I+
Sbjct: 211 RLTVDDV----VTSERDTTEGIFDFLDELIKEKDAEGALRASYDVDET---PDDLLNWIE 263
Query: 643 EN 644
+N
Sbjct: 264 DN 265
>gi|448340220|ref|ZP_21529193.1| replication factor C large subunit [Natrinema gari JCM 14663]
gi|445630526|gb|ELY83787.1| replication factor C large subunit [Natrinema gari JCM 14663]
Length = 500
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 145/302 (48%), Gaps = 43/302 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE YRP T +E+ GN + QL W W++ K+ I+ GS
Sbjct: 4 WTETYRPTTLSEVRGNNKARDQLEEWAETWDDH------------------RKSVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+++ A S
Sbjct: 46 PGVGKTSAAHALAGDMGWPVMELNASDSRG--------------ADVIEKIAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++++DE D D GG ++ +K + PI+ + N+ Y KSL N
Sbjct: 92 LTGGEAGRRLVVLDEADNFHGNADYGGSREVTRVVKDASQPIVLVANEFYEMS-KSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I EG+E E ALE++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREGVEFEEEALEKIAESTSGDLRSAVNDLQAVAEEAE 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++S +D F +D+L G LR +D + PD + I+
Sbjct: 211 RLTVDDV----VTSERDTTEGIFDFLDELIKEKDAEGALRAAYDVDET---PDDLLNWIE 263
Query: 643 EN 644
+N
Sbjct: 264 DN 265
>gi|397772592|ref|YP_006540138.1| AAA ATPase central domain protein [Natrinema sp. J7-2]
gi|397681685|gb|AFO56062.1| AAA ATPase central domain protein [Natrinema sp. J7-2]
Length = 500
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 145/302 (48%), Gaps = 43/302 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE YRP T +E+ GN + QL W W++ K+ I+ GS
Sbjct: 4 WTETYRPTTLSEVRGNNKARDQLEEWAETWDDH------------------RKSVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+++ A S
Sbjct: 46 PGVGKTSAAHALAGDMGWPVMELNASDSRG--------------ADVIEKIAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++++DE D D GG ++ +K + PI+ + N+ Y KSL N
Sbjct: 92 LTGGEAGRRLVVLDEADNFHGNADYGGSREVTRVVKDASQPIVLVANEFYEMS-KSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I EG+E E ALE++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREGVEFEEEALEKIAESTSGDLRSAVNDLQAVAEEAE 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++S +D F +D+L G LR +D + PD + I+
Sbjct: 211 RLTVDDV----VTSERDTTEGIFDFLDELIKEKDAEGALRAAYDVDET---PDDLLNWIE 263
Query: 643 EN 644
+N
Sbjct: 264 DN 265
>gi|448681247|ref|ZP_21691380.1| replication factor C large subunit [Haloarcula argentinensis DSM
12282]
gi|445767780|gb|EMA18873.1| replication factor C large subunit [Haloarcula argentinensis DSM
12282]
Length = 508
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 155/347 (44%), Gaps = 49/347 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +A IL
Sbjct: 1 MDWTEKYRPTTLSEVRGNDKARDALKEWADTWDDH------------------REAVILY 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + +G+ IE+NASDSR K + I + A S
Sbjct: 43 GSPGIGKTSAAHALANDMGWPTIELNASDSRTK--------------DVINRVAGEAAKS 88
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + ++IMDE D + DRGG + A +K + P+I I N+ Y L
Sbjct: 89 GTLTAGGGGRRLVIMDEADNIHGNADRGGARAITALVKEASQPMILIANEYYEMS-NGLR 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N C D+ FR + I L + EG+E AL+ELA++ +GD+R A+ LQ ++ +
Sbjct: 148 NNCQDIEFRDVSPRSIVPVLRDLCRQEGVEYESDALQELAEQNSGDLRGAVKDLQAIAET 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++ +D F +D + G + ++ D+ + DL+ +
Sbjct: 208 TERLTADDV----VTGERDTTEGIFEYLDVVLKEAGAQEALEASYDVDETPDDLINWIED 263
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+Y + + RA E +S+ D + ++R Q +
Sbjct: 264 NMPKDYEGTE-----------LVRAYEFLSNADQWLGRVRETQNYSF 299
>gi|410672033|ref|YP_006924404.1| replication factor C large subunit [Methanolobus psychrophilus R15]
gi|409171161|gb|AFV25036.1| replication factor C large subunit [Methanolobus psychrophilus R15]
Length = 497
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 104/355 (29%), Positives = 171/355 (48%), Gaps = 44/355 (12%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP+T ++VG+++ + +L W W D KA IL
Sbjct: 5 MEWAEKYRPRTLADVVGHKKSIGELRKWGDSWAHGAPDV---------------KAVILH 49
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G G+GKT++A + ++ IE+NASD R A + + + GS A+ ++ L
Sbjct: 50 GQAGIGKTSSAHAMAADYDWEVIELNASDQR---TASVIEKVAGS-ASQMRTLTGMSG-- 103
Query: 464 ANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRY--SQKLKS 520
K ++I+DE D + DRGG +I IK + PII I ND Y S +++
Sbjct: 104 ---------KRLIILDEADNLHGTSDRGGARAIIDVIKNTSQPIILIANDIYGISSSVRA 154
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
L C +++F + + + L +IA EGL ALE++A+ +GD R A+N LQ +
Sbjct: 155 L---CLEIKFPAIQARSMIPALKEIARNEGLMCGIGALEKIAENADGDFRSAVNDLQAAA 211
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
+ + + +DI ++ +D S F V K+F K ++ L + DL+
Sbjct: 212 IGRTEVHLEDIS----TAERDNKESVFKVVGKIFKGKSVKAALEASYSLDETPEDLIQ-W 266
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
I EN N G+DE K I +A +S D F ++R+ Q ++L + +S+
Sbjct: 267 IDENLPN---QYTGKDEQKLTPDIVQAYAYLSRADRFLGRVRKRQNYRLWRYASV 318
>gi|448685123|ref|ZP_21693133.1| replication factor C large subunit [Haloarcula japonica DSM 6131]
gi|445782326|gb|EMA33173.1| replication factor C large subunit [Haloarcula japonica DSM 6131]
Length = 508
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 156/347 (44%), Gaps = 49/347 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +A IL
Sbjct: 1 MDWTEKYRPTTLSEVRGNDKARDALKKWAETWDDH------------------REAVILY 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + +G+ IE+NASDSR K + I + A S
Sbjct: 43 GSPGIGKTSAAHALANDMGWPTIELNASDSRTK--------------DVINRVAGEAAKS 88
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + ++IMDE D + DRGG + A +K + P+I I N+ Y L
Sbjct: 89 GTLTAGGGGRRLVIMDEADNIHGNADRGGARAITALVKEASQPMILIANEYYEMS-NGLR 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N C D+ FR + I L + EG+E AL+ELA++ +GD+R A+ LQ ++ +
Sbjct: 148 NNCQDIEFRDVSPRSIVPVLRDLCRQEGVEYESDALQELAEQNSGDLRGAVKDLQAIAET 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++ +D F +D + G + ++ D+ + DL+ +
Sbjct: 208 TERLTDDDV----VTGERDTTEGIFEYLDVVLKEAGAQEALEASYDVDETPDDLINWIED 263
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+Y+ + + RA E +S+ D + ++R Q +
Sbjct: 264 NMPKDYQGAE-----------LVRAYEFLSNADQWLGRVRETQNYSF 299
>gi|325968176|ref|YP_004244368.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
gi|323707379|gb|ADY00866.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 435
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 166/347 (47%), Gaps = 45/347 (12%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP+ +E+V ++ K L W+ W + GK + KA +L
Sbjct: 5 IPWIEKYRPRKLSEVVNQEEAKKALLDWINSWEK----------GK-----PSRKAVMLV 49
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG GKTT A + G++ +E+NASD R +I + IGGS + +L
Sbjct: 50 GSPGTGKTTLAYALANEKGYEVLELNASDVR--TGERIRQIIGGS--------MKMGSLF 99
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
R +++ DEVDG++ DRGG+A ++ I+ S PII N+ + K + L
Sbjct: 100 GFRGR------IILFDEVDGLNVREDRGGLAAIVELIRESTWPIIMTANNPWDPKFRELR 153
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
+ ++ + R+ +I L +I N EG++ E AL+ +A+ GD+R AIN LQ +
Sbjct: 154 DEAEVIQLKPLRENDILTILRRICNNEGIKCEEDALKLIAEASGGDVRAAINDLQAAAEG 213
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
V+ DD+ + + F +DK+F R DE ++ +P
Sbjct: 214 KKVLTKDDVT----VTERAHQFDMFKVLDKVFHAR----RFDEARSVT-----FLPSFDW 260
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
ENY + + K + ++ A +++S D+ +I + Q+W+L
Sbjct: 261 ENYYPWALDNIPSVYAKSIEAVSDAFDNLSLSDVVKGRITKTQEWEL 307
>gi|448630971|ref|ZP_21673426.1| replication factor C large subunit [Haloarcula vallismortis ATCC
29715]
gi|445755345|gb|EMA06735.1| replication factor C large subunit [Haloarcula vallismortis ATCC
29715]
Length = 503
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 155/347 (44%), Gaps = 49/347 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +A I+
Sbjct: 1 MDWTEKYRPTTLSEVRGNDKARDALKEWADTWDDH------------------REAVIIH 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + +G+ IE+NASDSR K + I + A S
Sbjct: 43 GSPGIGKTSAAHALANDMGWPTIELNASDSRTK--------------DVINRVAGEAAKS 88
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + ++IMDE D + DRGG + A +K + P+I I N+ Y L
Sbjct: 89 GTLTAGGGGRRLVIMDEADNIHGNADRGGARAITALVKEASQPMILIANEYYEMS-NGLR 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N C D+ FR + I L + EG+E AL+ELA++ +GD+R A+ LQ ++ +
Sbjct: 148 NNCQDIEFRDVSPRSIVPVLRDLCRQEGVEYESDALQELAEQNSGDLRGAVKDLQAIAET 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++ +D F +D + G + ++ D+ + DL+ +
Sbjct: 208 TERLTADDV----VTGERDTTEGIFEYLDVVLKEAGAQEALEASYDVDETPDDLINWIED 263
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+Y + + RA E +S+ D + ++R Q +
Sbjct: 264 NMPKDYEGAE-----------LVRAYEFLSNADQWLGRVRETQNYSF 299
>gi|386001561|ref|YP_005919860.1| replication factor C large subunit [Methanosaeta harundinacea 6Ac]
gi|357209617|gb|AET64237.1| Replication factor C large subunit [Methanosaeta harundinacea 6Ac]
Length = 509
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 164/357 (45%), Gaps = 55/357 (15%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
+++ WTEKYRP+ E++GN + V +L W W + ++A +
Sbjct: 2 TAIKWTEKYRPRRLKEVLGNGKAVSELEAWARSWERGIPE---------------KRAVV 46
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
L G G+GKT+AA + + +G+ IE+NASDSR A ISK G +
Sbjct: 47 LYGPAGVGKTSAALALAEEMGWDQIEMNASDSR--TAAAISKVAGAA------------- 91
Query: 462 LSANMDRSKHPKTVLIMDEVDGM-SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
A M K ++I+DE D + + DRGG A ++ +K + P++ I ND Y K
Sbjct: 92 --ARMMTFSGKKRLVILDEADNLYGSADRGGSAAMLRLVKEADQPVVLIANDYYGLS-KP 148
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
L ++FR+ K + L +I AEG +EE+AD NGD+R IN LQ
Sbjct: 149 LREGTLGIQFRRITKSTVLSALREICRAEGAACTPELVEEIADMANGDLRSGINDLQ--- 205
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSM--SDPDLVP 638
+ ++ + ++ +D S F V K+ G L +I S+ S DLV
Sbjct: 206 ---AALEGAREVGEVATAVRDAKASIFDGVAKI--LRGSSLGEAVQIAWSLDESPEDLVH 260
Query: 639 LLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
+ + + Y+P+ +A E +S D+F ++RR Q + L + +S
Sbjct: 261 WIDENLPLVYKPAD-----------LAAGYERLSRADVFLGRVRRRQNYGLWRYASF 306
>gi|448305471|ref|ZP_21495401.1| replication factor C large subunit [Natronorubrum sulfidifaciens
JCM 14089]
gi|445588241|gb|ELY42485.1| replication factor C large subunit [Natronorubrum sulfidifaciens
JCM 14089]
Length = 494
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 143/302 (47%), Gaps = 43/302 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + QL W W++ +A I+ GS
Sbjct: 4 WTEKYRPTTLSEVRGNNKARDQLEEWARTWDDH------------------REAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + LG+ A+E+NASD+R A+ I+ + A S
Sbjct: 46 PGVGKTSAAHALANDLGWPAMELNASDNR--------------QADVIERIAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + ++I+DE D D GG ++ +K + PI+ + N+ Y +SL N
Sbjct: 92 LTAGGAGRRLVILDEADNFHGNADYGGSREVTRVVKNANQPIVLVANEFYDMS-QSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I EG+E AL+++AD +GD+R A+N LQ ++ S
Sbjct: 151 CETVEFRDVSKRSIVPVLRDICRREGIEFEAEALKKIADATSGDLRSAVNDLQAVAEETS 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++S +D F +D L G LR +D +PD + I+
Sbjct: 211 RLTVDDV----VTSERDTTQGIFDFLDALIKEEDAEGALRASYDVD---ENPDEMLNWIE 263
Query: 643 EN 644
+N
Sbjct: 264 DN 265
>gi|448652146|ref|ZP_21681159.1| replication factor C large subunit [Haloarcula californiae ATCC
33799]
gi|445769549|gb|EMA20623.1| replication factor C large subunit [Haloarcula californiae ATCC
33799]
Length = 508
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 155/347 (44%), Gaps = 49/347 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +A IL
Sbjct: 1 MDWTEKYRPTTLSEVRGNDKARDALKKWAETWDDH------------------REAVILY 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + +G+ IE+NASDSR K + I + A S
Sbjct: 43 GSPGIGKTSAAHALANDMGWPTIELNASDSRTK--------------DVINRVAGEAAKS 88
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + ++IMDE D + DRGG + A +K + P+I I N+ Y L
Sbjct: 89 GTLTAGGGGRRLVIMDEADNIHGNADRGGARAITALVKEASQPMILIANEYYEMS-NGLR 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N C D+ FR + I L + EG+E AL+ELA++ +GD+R A+ LQ ++ +
Sbjct: 148 NNCQDIEFRDVSPRSIVPVLRDLCRQEGVEYESDALQELAEQNSGDLRGAVKDLQAIAET 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++ +D F +D + G + ++ D+ + DL+ +
Sbjct: 208 TERLTADDV----VTGERDTTEGIFEYLDVVLKEAGAQDALEASYDVDETPDDLINWIED 263
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+Y + + RA E +S+ D + ++R Q +
Sbjct: 264 NMPKDYEGTE-----------LVRAYEFLSNADQWLGRVRETQNYSF 299
>gi|448298272|ref|ZP_21488302.1| replication factor C large subunit [Natronorubrum tibetense GA33]
gi|445591813|gb|ELY46010.1| replication factor C large subunit [Natronorubrum tibetense GA33]
Length = 503
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 129/270 (47%), Gaps = 38/270 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + L W W++ KA I+ GS
Sbjct: 4 WTEKYRPTTLSEVRGNNKARDSLEEWAKTWDDH------------------RKAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+ + + S
Sbjct: 46 PGIGKTSAAHALANDMGWPVMELNASDSRG--------------ADVIERVAGEASKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + ++IMDE D D GG ++ +K + P+I + N+ Y KSL N
Sbjct: 92 LTAGGAGRRLVIMDEADNFHGNADYGGSREVTRVVKEANQPVILVANEFYDMS-KSLRNS 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I EG+E E ALE++++ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREGVEFEEEALEKISESTSGDLRSAVNDLQAVAEEAD 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ DD+ ++S +D F +D +
Sbjct: 211 RLTVDDV----VTSQRDRTEGIFDFLDTVI 236
>gi|344212534|ref|YP_004796854.1| replication factor C large subunit [Haloarcula hispanica ATCC
33960]
gi|343783889|gb|AEM57866.1| replication factor C large subunit [Haloarcula hispanica ATCC
33960]
Length = 508
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 155/347 (44%), Gaps = 49/347 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +A I+
Sbjct: 1 MDWTEKYRPTTLSEVRGNDKARDALKKWADTWDDH------------------REAVIIH 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + +G+ IE+NASDSR K + I + A S
Sbjct: 43 GSPGIGKTSAAHALANDMGWPTIELNASDSRTK--------------DVINRVAGEAAKS 88
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + ++IMDE D + DRGG + A +K + P+I I N+ Y L
Sbjct: 89 GTLTAGGGGRRLVIMDEADNIHGNADRGGARAITALVKEASQPMILIANEYYEMS-NGLR 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N C D+ FR + I L + EG+E AL+ELA++ +GD+R A+ LQ ++ +
Sbjct: 148 NNCQDIEFRDVSPRSIVPVLRDLCRQEGVEYESDALQELAEQNSGDLRGAVKDLQAIAET 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++ +D F +D + G + ++ D+ + DL+ +
Sbjct: 208 TERLTADDV----VTGERDTTEGIFEYLDVVLKEAGAQEALEASYDVDETPDDLINWIED 263
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+Y + + RA E +S+ D + ++R Q +
Sbjct: 264 NMPKDYEGAE-----------LTRAYEFLSNADQWLGRVRETQNYSF 299
>gi|448411517|ref|ZP_21575918.1| replication factor C large subunit [Halosimplex carlsbadense 2-9-1]
gi|445670089|gb|ELZ22693.1| replication factor C large subunit [Halosimplex carlsbadense 2-9-1]
Length = 492
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 139/298 (46%), Gaps = 38/298 (12%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP + EI GN + L W W + +A +L
Sbjct: 1 MDWTEKYRPSSLAEIRGNDKARDALREWADTWEDH------------------REAVVLH 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + G+ IE+NASDSR K + I+ + A S
Sbjct: 43 GSPGIGKTSAAHALASDEGWATIELNASDSRTK--------------DVIERVAGEAAKS 88
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + + V+I+DE D + DRGG A + + +K + P+I I N+ Y L
Sbjct: 89 GTLTAGEAGRRVVILDEADNLHGNVDRGGSAAITSLVKEASQPMILIANEFYDMS-NGLR 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N C D+ FR K+ I L + EG+E ++ AL+++A+ +GD+R AI LQ M+
Sbjct: 148 NACQDIEFRDVSKRSIVPVLRDLCRKEGVEYDDAALDQIAEMNSGDLRGAIKDLQAMAEG 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
I DD+ ++ +D+ F +D + G + + D+ + DL+ +
Sbjct: 208 RDRIGADDV----VTGERDKTEGVFNYLDTVIKEAGAEEALKASYDVDETPDDLINWI 261
>gi|408383245|ref|ZP_11180782.1| replication factor C large subunit [Methanobacterium formicicum DSM
3637]
gi|407814027|gb|EKF84665.1| replication factor C large subunit [Methanobacterium formicicum DSM
3637]
Length = 505
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 119/444 (26%), Positives = 196/444 (44%), Gaps = 75/444 (16%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKY P+T +++GN++ ++++ WL +W+ +K +L
Sbjct: 1 MLWTEKYSPQTMKDVLGNKKAIEEIENWLENWDH----------------GEPQKCLLLV 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT A LV + IE+NASD R N+I E ++ +L
Sbjct: 45 GPPGTGKTTLAHLVAREFS-DHIELNASDKRSYDII----------MNTIGEASASVSLF 93
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
R ++I+DEVDG+ DRGGI + IK P+I + ND YS++++SL
Sbjct: 94 GQGGRK-----LIILDEVDGLHGNEDRGGIRAINKIIKEGHHPMIMMANDLYSKRIQSLK 148
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
+ C ++ RK I L +I EG++ E L LA R GD+R AIN LQ ++
Sbjct: 149 SKCQLIKIRKVHTNSIVALLKKICIKEGVDFEEHVLRTLAKRSRGDLRSAINDLQVIAQG 208
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
I DD++ + S KD+ + F +V + K R+ + + L +DP + I
Sbjct: 209 KDSITSDDLK---VISEKDDINNIFDSVRTVLKSKNPK-RIKDSLRLE-ADPGFILEQIT 263
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIF---NVQIRRNQQWQLSQSSSLASCI 699
EN P E ++ I +A ++++ D++ R W+ + +
Sbjct: 264 ENI----PR-----EYEKPEEIEKAYNAVAEADVYLGRAFHTRHYGYWKYTYD------L 308
Query: 700 IPAALMHGQRETLEQGER-NFNRFGGWLGKN-----------STMGKNLRL-----LEDL 742
+ + + ET ++ R + F L KN + +G L +E
Sbjct: 309 MGVGVALAKDETYKKFSRYTSSTFYSKLSKNRAKRDLRDRVATKIGAKLHTSRKVAIEYF 368
Query: 743 HFHHLASRKSKLGRDTLRLDYFSL 766
++ + K L RD DYF L
Sbjct: 369 PYYEIMFEKDDLARDL--ADYFDL 390
>gi|448671289|ref|ZP_21687228.1| replication factor C large subunit [Haloarcula amylolytica JCM
13557]
gi|445765892|gb|EMA17029.1| replication factor C large subunit [Haloarcula amylolytica JCM
13557]
Length = 508
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 155/347 (44%), Gaps = 49/347 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +A I+
Sbjct: 1 MDWTEKYRPTTLSEVRGNDKARDALKKWADTWDDH------------------REAVIIH 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + +G+ IE+NASDSR K + I + A S
Sbjct: 43 GSPGIGKTSAAHALANDMGWPTIELNASDSRTK--------------DVINRVAGEAAKS 88
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + ++IMDE D + DRGG + A +K + P+I I N+ Y L
Sbjct: 89 GTLTAGGGGRRLVIMDEADNIHGNADRGGARAITALVKEASQPMILIANEYYEMS-NGLR 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N C D+ FR + I L + EG+E AL+ELA++ +GD+R A+ LQ ++ +
Sbjct: 148 NNCQDIEFRDVSPRSIVPVLRDLCRQEGVEYESEALQELAEQNSGDLRGAVKDLQAIAET 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++ +D F +D + G + ++ D+ + DL+ +
Sbjct: 208 TERLTADDV----VTGERDTTEGIFEYLDVVLKEAGAQEALEASYDVDETPDDLINWIED 263
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+Y + + RA E +S+ D + ++R Q +
Sbjct: 264 NMPKDYEGAE-----------LTRAYEFLSNADQWLGRVRETQNYSF 299
>gi|11498795|ref|NP_070024.1| replication factor C large subunit [Archaeoglobus fulgidus DSM
4304]
gi|42559326|sp|O29072.1|RFCL_ARCFU RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit;
AltName: Full=afRFC large subunit; Short=afRFCla
gi|2649392|gb|AAB90051.1| activator 1, replication factor C, 53 KD subunit [Archaeoglobus
fulgidus DSM 4304]
Length = 479
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 124/441 (28%), Positives = 216/441 (48%), Gaps = 70/441 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRPKT E+V ++ ++ ++ W W KR K +L+
Sbjct: 1 MLWVEKYRPKTLEEVVADKSIITRVIKWAKSW---------KRGSK---------PLLLA 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA-- 461
G PG+GKT+ A + +G++A+E+NASD R ++ + I G A E +S+E
Sbjct: 43 GPPGVGKTSLALALANTMGWEAVELNASDQRS---WRVIERIVGEGA--FNETISDEGEF 97
Query: 462 LSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKI-PIICICNDRYSQKLK 519
LS+ + + K ++I+DEVD + D GG A LI IK P+I I ND Y
Sbjct: 98 LSSRIGKLK----LIILDEVDNIHKKEDVGGEAALIRLIKRKPAQPLILIANDPYKLS-P 152
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L N C + F++ KQ++A+ L +IA EG++V++ L ++A+ GD+R AIN Q +
Sbjct: 153 ELRNLCEMINFKRLTKQQVARVLERIALKEGIKVDKSVLLKIAENAGGDLRAAINDFQAL 212
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPL 639
+ +K +D+ L +++DI F + +F + +E + L S D++
Sbjct: 213 AEGKEELKPEDV--FLTKRTQEKDI--FRVMQMIFKTKNPAV-YNEAMLLDESPEDVIHW 267
Query: 640 LIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCI 699
+ + + Y +G + + A E++S DIF ++RR Q ++L + +S +
Sbjct: 268 VDENLPLEY----SGVE-------LVNAYEALSRADIFLGRVRRRQFYRLWKYASYLMTV 316
Query: 700 IPAALMHGQRETLEQGERNFNRF---GGW-----LGKNSTMGKNLRLLEDL-HFHHLASR 750
G ++ E+ ++ F R+ W L + M + ++LE + + HL+ R
Sbjct: 317 -------GVQQMKEEPKKGFTRYRRPAVWQMLFQLRQKREMTR--KILEKIGKYSHLSMR 367
Query: 751 KSKLGRDTLRLDYFSLLLKQL 771
K++ T LLLK+L
Sbjct: 368 KAR----TEMFPVIKLLLKEL 384
>gi|448322580|ref|ZP_21512050.1| replication factor C large subunit [Natronococcus amylolyticus DSM
10524]
gi|445601338|gb|ELY55327.1| replication factor C large subunit [Natronococcus amylolyticus DSM
10524]
Length = 497
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 120/247 (48%), Gaps = 34/247 (13%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE YRP T +E+ GN + QL W W++ KA I+ GS
Sbjct: 4 WTETYRPTTLSEVRGNNKARDQLKEWAESWDDH------------------RKAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+ + A S
Sbjct: 46 PGVGKTSAAHALANDMGWPVMELNASDSRG--------------ADVIERVAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + ++I+DE D D GG ++ +K + P++ I N+ Y +SL N
Sbjct: 92 LTAGGSGRRLVILDEADNFHGNADYGGSREVTRVVKDASQPMVLIANEFYDMS-QSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I EG+E E ALE++AD +GD+R A+N LQ ++
Sbjct: 151 CETVEFRDVSKRSIVPVLRDICRREGVEFEEEALEQIADSTSGDLRSAVNDLQAIAEEAE 210
Query: 585 VIKYDDI 591
+ +D+
Sbjct: 211 RLTVEDV 217
>gi|134046379|ref|YP_001097864.1| replication factor C large subunit [Methanococcus maripaludis C5]
gi|166977384|sp|A4FZL6.1|RFCL_METM5 RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|132664004|gb|ABO35650.1| replication factor C large subunit [Methanococcus maripaludis C5]
Length = 484
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 175/385 (45%), Gaps = 67/385 (17%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRPK+ N++ G+ + + L W+ E F+ NG+KQ K +L+G
Sbjct: 4 WVEKYRPKSLNDVAGHNKTKQALINWI----ESFV------NGQKQ------KPILLAGP 47
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG GKTT A + + F IE+NASD R N + I ++V A S +
Sbjct: 48 PGSGKTTLAHAIAKDYAFDVIELNASDKR--------------NKDVIAQVVGTAATSKS 93
Query: 466 MDRSKHPKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + T++++DEVDG+S D RGG+A++I +K ++ P+I ND Y L +L N
Sbjct: 94 LTGKR---TLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENPVILTANDVYKPALMTLRNN 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL--S 582
+ + I L +IA EG E++E ++ +A GD+R AIN LQ ++ S
Sbjct: 151 VNLINVGSVHTNSIPPVLRKIALKEGFEIDEKVIKTIASHSGGDLRAAINDLQSLATGGS 210
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
L V ++ R D + S F A+ + + D+ D + I
Sbjct: 211 LEVEDAKELPDR------DSEKSIFDAMRIIMKTTHYDIATSATRDVK-EDLGTIQEWIS 263
Query: 643 EN----YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASC 698
EN Y+ Y+ + G D +S D+F ++ + Q + L + +S
Sbjct: 264 ENLPKEYLRYKDLAGGYD-------------YLSKSDVFLGRVFKRQYFGLWRYAS---- 306
Query: 699 IIPAALMHGQRETLEQGERNFNRFG 723
A + G E+ R F R+G
Sbjct: 307 ---ALMTAGTALAKEEKYRGFTRYG 328
>gi|320583398|gb|EFW97611.1| hypothetical protein HPODL_0241 [Ogataea parapolymorpha DL-1]
Length = 684
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 149/331 (45%), Gaps = 65/331 (19%)
Query: 304 KKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQ 363
K + Q I KS A K P P+ K WTEKYRP ++VGN++
Sbjct: 79 KAAEQTIRQKSKPAEKQP--------KPSTYK---------LWTEKYRPSGFLDLVGNER 121
Query: 364 LVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423
+Q+ W+ WN+ N + ++ G PG+GKT+ A ++ + LG+
Sbjct: 122 TNRQILQWINQWNQVVFGKPCAETTDFYNRPD-RRVLLIHGPPGIGKTSIAHVISKQLGY 180
Query: 424 QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG 483
+ E+NASD R G + + IK + N +L+ + LI+DE+DG
Sbjct: 181 EVREINASDERA----------GATVQDKIKNAMKNNSLTGS-------PVCLILDEIDG 223
Query: 484 MSAGDRGGIADLIASI--------------------KISKIPIICICNDRYSQKLKSLVN 523
A + G I+ L+ I +I K PII +CND YS L+ L
Sbjct: 224 --ATEHGFISILVDLINKDRRDTASLGLDTKGKTQREILKRPIIALCNDVYSPVLEKLRP 281
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
+C + FRK + + +L +I E L V++ L+ + + GD+R IN LQ+ S +
Sbjct: 282 HCETIAFRKSHPRLVKSKLKKICQREALVVDDRVLDAIIESTEGDLRNCINFLQFNSSAA 341
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
++ L SS+KD I F +D +F
Sbjct: 342 TL--------NLESSSKDTQIGWFVLLDSIF 364
>gi|124027779|ref|YP_001013099.1| replication factor C large subunit [Hyperthermus butylicus DSM
5456]
gi|150415659|sp|A2BL93.1|RFCL_HYPBU RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|123978473|gb|ABM80754.1| Replication factor C large subunit [Hyperthermus butylicus DSM
5456]
Length = 484
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 161/351 (45%), Gaps = 51/351 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W KYRPK ++V ++ K WL W Q KAA+
Sbjct: 5 LPWIIKYRPKRVEDVVDQEEAKKLFLPWLRSW--------------LQGRIPERKAALFY 50
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G G+GKT+ + G + IE+NASD R K+D + I + +
Sbjct: 51 GPAGVGKTSLVEAAANEYGLELIEMNASDFRRKSDIERIAKIAATQFSLFG--------- 101
Query: 464 ANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ ++++DEVDG+S DRGG+ ++ I I+K PI+ ND + QKLK L
Sbjct: 102 -------RKRKIILLDEVDGISGTADRGGLDAILELINITKHPIVMTANDPWDQKLKPLR 154
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
+ + F + ++ + + L +I AE +E + AL+ +A R GD+R AIN LQ ++
Sbjct: 155 DASLMVPFYRLSERYVVQVLKRICAAENIECEDEALKLIAQRAEGDLRSAINDLQAIAEG 214
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL-- 640
V++ D +R L + +D SP+ + LF K + ++ +D D LL
Sbjct: 215 YGVVRVDLVRA--LLATRDRQYSPWEMLRNLF---MSKYIWQAKRAVTHTDLDYDTLLQW 269
Query: 641 IQENY-INY-RPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
I EN + Y P I RA E+++ DIF +I+R+ W L
Sbjct: 270 INENIAVQYTHPED-----------IWRAHEALARADIFLGRIKRSLSWDL 309
>gi|119872171|ref|YP_930178.1| replication factor C large subunit [Pyrobaculum islandicum DSM
4184]
gi|150415668|sp|A1RSA3.1|RFCL_PYRIL RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|119673579|gb|ABL87835.1| replication factor C large subunit [Pyrobaculum islandicum DSM
4184]
Length = 423
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 170/349 (48%), Gaps = 31/349 (8%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAIL 402
++ W EKYRPKT EIV ++ L +W+ + + T+ KK + KA +L
Sbjct: 2 AIPWVEKYRPKTFEEIVNQEEAKYTLASWICAKFKAPREFCTRWAKKKDKEIVEAKAVLL 61
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL 462
+G PG+GKTT + + + ++ IE+NASD R IK++V
Sbjct: 62 AGPPGIGKTTIVHALAREIKYELIELNASDVR--------------TGERIKQVVGRGLR 107
Query: 463 SANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
A++ + +++ DEVDG+ D GG+ ++ I+I+K+P+I N+ Y K + L
Sbjct: 108 EASL--FGYEGKLVLFDEVDGLHVKEDLGGLETIVEIIEIAKVPVIMTANNPYDPKFRPL 165
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ-YMS 580
+ + ++ + ++ + L +I EG + E AL +A GD+R AIN LQ Y+S
Sbjct: 166 RDIALVINLKRLSEDDVVEVLRRICANEGAKCEEEALRSIAKSSLGDLRAAINDLQMYLS 225
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
++ DDI++ ++ +S F +D+++ DE +S + P
Sbjct: 226 SGKKILTVDDIKR---VGERNPQLSMFEILDRVYRARW----FDEARAISFN-----PSF 273
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
E Y + + K L L+A A + +S D+F +I++ Q+W+L
Sbjct: 274 DWEQYFLWALETIP-TVYKDLELMAIAYDRLSKADMFLGRIKKTQEWEL 321
>gi|448369733|ref|ZP_21556285.1| replication factor C large subunit [Natrialba aegyptia DSM 13077]
gi|445650908|gb|ELZ03824.1| replication factor C large subunit [Natrialba aegyptia DSM 13077]
Length = 512
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 129/270 (47%), Gaps = 38/270 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + +L W W++ A I+ GS
Sbjct: 4 WTEKYRPTTLSEVRGNNKARDKLEEWATTWDDH------------------RDAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+ + A S
Sbjct: 46 PGVGKTSAAHALASDMGWPVMELNASDSRG--------------ADVIERIAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++I+DE D D GG ++ +K + PI+ + N+ Y +SL N
Sbjct: 92 LTGGESGRRLVILDEADNFHGNADYGGSREVTRVVKSANQPIVLVANEFYDMS-QSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I E +E E ALE++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREDIEFEEEALEKIAETTSGDLRSAVNDLQAVAEDTD 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ DD+ ++S +D F +D L
Sbjct: 211 RLTVDDV----VTSERDTTEGIFDFLDALI 236
>gi|448350301|ref|ZP_21539120.1| replication factor C large subunit [Natrialba taiwanensis DSM
12281]
gi|445637808|gb|ELY90956.1| replication factor C large subunit [Natrialba taiwanensis DSM
12281]
Length = 512
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 129/270 (47%), Gaps = 38/270 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + +L W W++ A I+ GS
Sbjct: 4 WTEKYRPTTLSEVRGNNKARDKLEEWATTWDDH------------------RDAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+ + A S
Sbjct: 46 PGVGKTSAAHALANDMGWPVMELNASDSRG--------------ADVIERIAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++I+DE D D GG ++ +K + PI+ + N+ Y +SL N
Sbjct: 92 LTGGESGRRLVILDEADNFHGNADYGGSREVTRVVKSANQPIVLVANEFYDMS-QSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I E +E E ALE++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREDIEYEEEALEKIAETTSGDLRSAVNDLQAVAEDTG 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ DD+ ++S +D F +D L
Sbjct: 211 RLTVDDV----VTSERDTTEGIFDFLDALI 236
>gi|448311841|ref|ZP_21501594.1| replication factor C large subunit [Natronolimnobius
innermongolicus JCM 12255]
gi|445603462|gb|ELY57424.1| replication factor C large subunit [Natronolimnobius
innermongolicus JCM 12255]
Length = 507
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 159/348 (45%), Gaps = 55/348 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE YRP T +E+ GN + L W W++ A I+ GS
Sbjct: 4 WTETYRPTTLSEVRGNNKARDNLEQWAKTWDDH------------------RDAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+ + A S
Sbjct: 46 PGVGKTSAAHALASDMGWPVMELNASDSRG--------------ADVIERVAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++I+DE D D GG A++ +K + PI+ + N+ Y +SL N
Sbjct: 92 LTGGEAGRRLVILDEADNFHGNADYGGSAEVTRVVKDANQPIVLVANEFYDMS-QSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I EG+E E ALE++A +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREGIEFEEDALEKIAADTSGDLRSAVNDLQAVAEDTD 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++S +D F +D + G LR +D +PD + I+
Sbjct: 211 RLTVDDV----VTSQRDTTEGIFDFLDTVIKEEDAEGALRASYDVD---ENPDEMLNWIE 263
Query: 643 ENY-INYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+N +YR + +A A E +++ D + ++R Q +
Sbjct: 264 DNVPKDYRGAE-----------LADAYEFLANADRWLGRVRATQNYSY 300
>gi|297527206|ref|YP_003669230.1| AAA ATPase central domain-containing protein [Staphylothermus
hellenicus DSM 12710]
gi|297256122|gb|ADI32331.1| AAA ATPase central domain protein [Staphylothermus hellenicus DSM
12710]
Length = 423
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 172/348 (49%), Gaps = 47/348 (13%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W KYRPK ++V + KQ WL W + GK ++KAA+L
Sbjct: 5 IPWIIKYRPKKIADVVNQDKAKKQFIQWLESWLK----------GK-----PSKKAALLY 49
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADA-KISKGIGGSNANSIKELVSNEAL 462
G G GKT+ + G + +E+NASD R + D +I+K A S++ L +
Sbjct: 50 GPAGCGKTSLVEAAANEYGLEIVEMNASDFRRRQDIERIAK-----TAASMRSLFA---- 100
Query: 463 SANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
R K ++++DEVDG+S D+G I ++ ++I++ P++ N+ + QKL+ L
Sbjct: 101 -----RGK----IILLDEVDGISGTADKGAIYAILHLLEITRYPVVMTANNPWDQKLRPL 151
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
+ + F++ ++ + L +I E LE + AL+E+A R GD+R AIN LQ ++
Sbjct: 152 RDASLMISFKRLTERNVVIVLKRICQFEKLECEDAALKEIARRSEGDLRSAINDLQAIAE 211
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLI 641
+ + +R+ LS+ + + +PF A+ K+F K + +S ++ D ++I
Sbjct: 212 GFGRVTLNWVRE--LSAYRTREYAPFEALKKMF---NAKYIFQAKSAISQANIDYETMMI 266
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
N + P+ E I RA E++S D++ +IR+ W L
Sbjct: 267 WIN--EHIPTYYDDPEE-----IWRAYEALSRADVYMGRIRKTGSWDL 307
>gi|330507531|ref|YP_004383959.1| replication factor C large subunit [Methanosaeta concilii GP6]
gi|328928339|gb|AEB68141.1| replication factor C large subunit [Methanosaeta concilii GP6]
Length = 534
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 163/352 (46%), Gaps = 49/352 (13%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L WTEKYRP T +++GN + + L W W TG A IL
Sbjct: 5 LKWTEKYRPATLKQVLGNGKAIDDLREWALSWERSEPITG---------------AVILY 49
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G G GKT+AA + + IE+NASD+R A I+++ + S
Sbjct: 50 GPAGTGKTSAALALAHDFDWDYIEMNASDAR--------------TAGMIEKIAVPASRS 95
Query: 464 ANMDRSKHPKTVLIMDEVDGM-SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
S P+ V I+DE D + DRGG A ++ ++ + P+I I N+ Y KSL
Sbjct: 96 QTF--SGKPRLV-ILDEADNLHGTADRGGAAAMLRLVRNTLQPVILIANEYYEID-KSLR 151
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
+ ++FR R IA+ L I AEG++ N L +A+R GD+R IN LQ +
Sbjct: 152 DATRGIQFRSVRSTTIAQALRAICQAEGIDCNPDLLVTIAERAGGDMRSGINDLQAAAEG 211
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
++ +D L ++ +D S F ++ ++ N K ++ +L S DL+ + +
Sbjct: 212 QETLREED----LATAQRDVKSSIFRVLEVIYKGNNAKEALEASYNLDESPEDLINWVDE 267
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
+ Y +G+D + R E+++ DIF ++RR Q + L + +S
Sbjct: 268 NLPLAY----SGQD-------LLRGFETLARSDIFLGRVRRRQNYGLWRYAS 308
>gi|126178781|ref|YP_001046746.1| replication factor C large subunit [Methanoculleus marisnigri JR1]
gi|150415664|sp|A3CTR4.1|RFCL_METMJ RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|125861575|gb|ABN56764.1| replication factor C large subunit [Methanoculleus marisnigri JR1]
Length = 454
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 162/333 (48%), Gaps = 52/333 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP+ ++VGN V+ ++ W W+ + +K IL
Sbjct: 1 MDWVEKYRPQHLQDVVGNSGAVRLIYEWARDWSRQ------------------KKPLILY 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKT++A + + ++ +E+NASD R KA + G G + A+
Sbjct: 43 GKPGTGKTSSAYALANDMNWEVVELNASDQRTKAALERVAGAGSTTAS------------ 90
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYS--QKLKS 520
S + ++++DE D + DRGG ++ I ++ PII I ND YS ++LK+
Sbjct: 91 ----LSGASRKLILLDEADNLHGQADRGGAKAIVEIIAAAQQPIILIANDYYSLTRELKA 146
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ ++FR + + I RL QI AEG+ + AL+++A+R GD+R A+N L +
Sbjct: 147 VTE---PVQFRALQARSIVPRLRQICAAEGVACDPAALDDIANRAGGDMRAAVNMLYAAA 203
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMD-ERIDLSMSD-PDLVP 638
+ + D+ +SAKDE + F V F GK D R+ + + D PD +
Sbjct: 204 IGKEHLAAGDVH----TSAKDERSTIFELVGATF---KGKRDADLLRMAVEVEDTPDAIE 256
Query: 639 LLIQENYINYRPSSAGRDEVKRLSLIARAAESI 671
++ N +++ P A R E + +ARA E I
Sbjct: 257 QWLEGN-LDHMPDLASRAE--GYACLARADEYI 286
>gi|333911577|ref|YP_004485310.1| replication factor C large subunit [Methanotorris igneus Kol 5]
gi|333752166|gb|AEF97245.1| Replication factor C large subunit [Methanotorris igneus Kol 5]
Length = 502
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 176/382 (46%), Gaps = 59/382 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPKT E+ G+ ++ ++L W+ + + K +N K IL
Sbjct: 2 LEWVEKYRPKTLKEVAGHNEIKEKLKKWI------------EDHIKGKN----PKPIILV 45
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G+PG GKTT A + GF IE+NASD R +A +I+ +V A S
Sbjct: 46 GNPGCGKTTLAHALANDYGFDVIELNASDKRNRA--------------AIRHIVGTAASS 91
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
++ ++I+DEVDG+S D GG+++++ IK +K PII ND Y LK L
Sbjct: 92 KSLTGKN---ILIILDEVDGISGTEDSGGVSEILKVIKEAKNPIILTANDIYKPTLKPLR 148
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
+ C + I L +IA EGL+V+E L+ +A GD+R AIN L+ ++L
Sbjct: 149 DVCEVINVPNVHTNTILAVLKRIAEKEGLDVDEKTLKIIAKHSGGDLRAAINDLEALALG 208
Query: 583 LSVIKYDDIRQRLLSSAKDEDI--SPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
+I + S D D + F A+ +F + ++ + D V
Sbjct: 209 ------GEISPEIASKLPDRDTERTIFDAMRIIFKTTHYDIATLALMNCN-EDLQTVEEW 261
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCII 700
+ EN N E K+L I RA + +S DIF ++ + Q + L + AS ++
Sbjct: 262 LAENIPN---------EYKKLEDIERAYDYLSKADIFLGRVYKRQYFGLWK---FASALM 309
Query: 701 PAALMHGQRETLEQGERNFNRF 722
A + + E R F ++
Sbjct: 310 TAGVALAKDEKY----RGFTKY 327
>gi|126466117|ref|YP_001041226.1| replication factor C large subunit [Staphylothermus marinus F1]
gi|158513389|sp|A3DNV8.1|RFCL_STAMF RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|126014940|gb|ABN70318.1| replication factor C large subunit [Staphylothermus marinus F1]
Length = 423
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 167/348 (47%), Gaps = 47/348 (13%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W KYRPK ++V KQ WL W + GK ++KAA+L
Sbjct: 5 IPWIIKYRPKKIADVVNQDSAKKQFIQWLESWLK----------GK-----PSKKAALLY 49
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G G GKT+ + G + +E+NASD R + D + A +
Sbjct: 50 GPAGCGKTSLVEAAANEYGLEIVEMNASDFRRRQD------------------IERIAKT 91
Query: 464 ANMDRSKHPK-TVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
A RS + ++++DEVDG+S DRG I ++ ++I++ P++ N+ + QKLK L
Sbjct: 92 AAFMRSLFARGKIILLDEVDGISGTADRGAIDAILHLLEITRYPVVMTANNPWDQKLKPL 151
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
+ + F++ ++++ L +I E LE + AL E+A R GD+R AIN LQ ++
Sbjct: 152 RDASLMIAFKRLSERDVIIVLKRICQLEKLECEDAALREIARRSEGDLRSAINDLQAIAE 211
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLI 641
+ + +R+ LS+ + + +PF A+ K+F + + +S ++ D ++I
Sbjct: 212 GFGRVTLNWVRE--LSAYRTREYAPFEALQKMF---NARYIFQAKSAISQANIDYETMMI 266
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
N + P+ E I RA E++S D++ +IR++ W L
Sbjct: 267 WIN--EHIPTYYDDPEE-----IWRAYEALSRADVYMGRIRKSGSWDL 307
>gi|297620228|ref|YP_003708333.1| AAA ATPase central domain-containing protein [Methanococcus voltae
A3]
gi|297379205|gb|ADI37360.1| AAA ATPase central domain protein [Methanococcus voltae A3]
Length = 510
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 179/381 (46%), Gaps = 54/381 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRPK+ N++ G + +QL TW+ E+++ G K +L+
Sbjct: 1 MEWVEKYRPKSMNDVAGQNKTKEQLITWI----EEYIQNG-----------GYHKPLLLA 45
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT A + F+ IE+NASD R N N I+++V A+S
Sbjct: 46 GPPGCGKTTLAYALANDYNFEVIELNASDKR--------------NKNVIQQVVGTAAVS 91
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
++ + +++I+DEVDG+S D RGG++++I K +K PII ND Y L +L
Sbjct: 92 KSLSGRR---SLIILDEVDGLSGNDDRGGVSEIIKVAKTAKNPIILTANDPYKLNLSTLR 148
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N + I L +IA EG EV+ A++ +A +GD+R AIN L+ + +
Sbjct: 149 NSVHLVNVSSVHTNSIPPVLRKIALQEGYEVDPKAIKMIASHASGDLRAAINDLESLLIG 208
Query: 583 -LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLI 641
S ++ +D+R + +D + F AV + + DL+ D + +
Sbjct: 209 RTSPMETEDVRNL---ADRDSKGNIFDAVRIALKTTHYDIAVSTTRDLN-EDIGTIQEWL 264
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIP 701
EN P E ++ IA+A + IS DI+ ++ R Q + + +S
Sbjct: 265 AENI----PR-----EYQKPHEIAKAYDYISKSDIYLGRVYRRQHFGFWKYAS------- 308
Query: 702 AALMHGQRETLEQGERNFNRF 722
A + G + ++ R F R+
Sbjct: 309 ALMTAGVALSKDEKYRGFIRY 329
>gi|448592930|ref|ZP_21651977.1| replication factor C large subunit [Haloferax elongans ATCC
BAA-1513]
gi|445730956|gb|ELZ82543.1| replication factor C large subunit [Haloferax elongans ATCC
BAA-1513]
Length = 487
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 158/350 (45%), Gaps = 52/350 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +AAI+
Sbjct: 2 VDWTEKYRPSTLSEVRGNNKARDALAEWGKSWDDH------------------REAAIVH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + +G++ +E+NASD R A+ I+ A +
Sbjct: 44 GSPGIGKTSAAHALAADMGWETVELNASDQR--------------TADVIERFAGRAAKN 89
Query: 464 ANMDRSK---HPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLK 519
A + S + ++I+DE D + DRGG + + +K S PI+ I N+ Y +
Sbjct: 90 ATLAGSSAGTSTRQLVILDEADNIHGNYDRGGASAITKLVKSSSQPIVLIANEFYDMS-R 148
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L N C ++ FR + I L I EG+E + ALE +AD +GD+R A+N LQ +
Sbjct: 149 GLRNACREIEFRDVSARSIVPVLRDICRKEGVEFDSAALERIADMNSGDLRSAVNDLQAI 208
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPL 639
+ I + ++ +D + F +D + + + D+ + DL
Sbjct: 209 AEGRDQI----TEENVVMGDRDRSVGLFEFLDAVLKEKSAQEALYTAYDVDETPDDLTKW 264
Query: 640 LIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+ + + Y P DE +ARA E +++ D + ++R Q +
Sbjct: 265 IEDKVSLVYEP-----DE------LARAYEFLANADRWLGRVRATQNYSY 303
>gi|307354393|ref|YP_003895444.1| AAA ATPase central domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307157626|gb|ADN37006.1| AAA ATPase central domain protein [Methanoplanus petrolearius DSM
11571]
Length = 477
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 138/275 (50%), Gaps = 47/275 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPK+ +IVGN V+QL W A+W ++ ++
Sbjct: 12 LDWVEKYRPKSLGDIVGNNAAVRQLAEWAANWK------------------IGDEPVLIY 53
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKT+A + + ++ +E+NASD R K+ + I GS A +
Sbjct: 54 GKPGIGKTSAVYALAADMNWEVVELNASDDRTKS---VIDKIAGSTATT----------- 99
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRY--SQKLKS 520
M + + +++ DE D + DRGG ++ +IK S PI+ I ND Y +++LKS
Sbjct: 100 --MSLTGASRKLIVFDEADNLHGNADRGGARAILDTIKNSCQPIVLIANDIYGVAKELKS 157
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ C ++FR + + I RL I ++EG++ E AL ++AD +GD+R AIN L S
Sbjct: 158 V---CIQVQFRSLQARSIVPRLKYICSSEGIKCEENALLDIADESSGDLRSAINMLHAAS 214
Query: 581 LSLSVIKYDDIRQR-LLSSAKDEDISPFTAVDKLF 614
D+ +R + +S+KDE + F V F
Sbjct: 215 AGA------DVSEREVATSSKDERSTIFDLVGAAF 243
>gi|150403244|ref|YP_001330538.1| replication factor C large subunit [Methanococcus maripaludis C7]
gi|166977385|sp|A6VIW1.1|RFCL_METM7 RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|150034274|gb|ABR66387.1| AAA ATPase central domain protein [Methanococcus maripaludis C7]
Length = 482
Score = 125 bits (314), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 107/383 (27%), Positives = 176/383 (45%), Gaps = 63/383 (16%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRPK+ N++ G+ + + L W+ E F+ NG+KQ K +L+G
Sbjct: 4 WVEKYRPKSLNDVAGHNKTKESLIEWI----ESFI------NGQKQ------KPILLAGP 47
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG GKTT A + + F IE+NASD R N + I ++V A S +
Sbjct: 48 PGSGKTTLAYAIAKDYAFDVIELNASDKR--------------NKDVISQVVGTAATSKS 93
Query: 466 MDRSKHPKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + T++++DEVDG+S D RGG+A++I +K ++ P+I ND Y L +L N
Sbjct: 94 LTGKR---TLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENPVILTANDVYKPALMTLRNS 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
+ + I L +IA EG E++E ++ +A GD+R AIN LQ ++ S
Sbjct: 151 VNLINVGSVHTNSIPPVLRKIALKEGFEIDEKVIKTIASHAGGDLRAAINDLQSLATGGS 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I+ +D ++ +D + S F A+ + + D+ + + I EN
Sbjct: 211 -IEVEDAKEL---PDRDSEKSIFDAMRIIMKTTHYDIATSATRDVK-EELGTIEEWISEN 265
Query: 645 ----YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCII 700
Y+ Y+ + G D +S D+F ++ R Q + L + +S
Sbjct: 266 LPKEYLKYKDLANGYD-------------YLSKSDVFLGRVFRRQYFGLWRYAS------ 306
Query: 701 PAALMHGQRETLEQGERNFNRFG 723
A + G E+ R F R+
Sbjct: 307 -ALMTAGTALAKEEKYRGFTRYA 328
>gi|20090661|ref|NP_616736.1| replication factor C large subunit [Methanosarcina acetivorans C2A]
gi|42559496|sp|Q8TPU4.1|RFCL_METAC RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|19915708|gb|AAM05216.1| replication factor C, large subunit [Methanosarcina acetivorans
C2A]
Length = 607
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 170/355 (47%), Gaps = 44/355 (12%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
S++ W EKYRP+T ++VGN++ V+ W W + +T +A I
Sbjct: 8 SAIEWAEKYRPRTLEDVVGNKKAVRDFRAWAEEWQSRIPET---------------RAVI 52
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
L G G+GKT++A + + + + IE+NASD R A + + I GS
Sbjct: 53 LYGPAGIGKTSSAHALARDMDWDVIELNASDQR---TAGVIEKIAGS------------- 96
Query: 462 LSANMDRSKHPKTVLIMDEVDGM-SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
+A+M+ K ++I+DE D + DRGG+ + IK + PI+ I ND Y +
Sbjct: 97 -AASMNTLFGSKRLIILDEADNIHGTADRGGMRAISGIIKGTLQPIVLIANDIYGLT-PT 154
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ N C +++F + + + L ++ AEG+ ++ AL ++A+ GD R AIN LQ +
Sbjct: 155 IRNLCLEIKFGSVQSRSMVPALKKVCGAEGVYCSQEALLQIAENAGGDFRSAINDLQAAA 214
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
++ +DI ++ +D + F A+ K+F K ++ L S DLV +
Sbjct: 215 SGKEKLEVEDIG----TAGRDVKENIFKAMQKIFKSTDCKKALESAYGLDESPEDLVHWI 270
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
+ I Y +++K +S D++ ++++ Q +++ + +S+
Sbjct: 271 DENLPIQYARKDGNLEDIK------TGFGYLSKADLYLGRVKKRQNYRMWRYASM 319
>gi|452208866|ref|YP_007488980.1| Replication factor C large subunit [Methanosarcina mazei Tuc01]
gi|452098768|gb|AGF95708.1| Replication factor C large subunit [Methanosarcina mazei Tuc01]
Length = 605
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 171/355 (48%), Gaps = 44/355 (12%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
S++ W EKYRP+T ++VGN++ V+ L W W Q+ ++A I
Sbjct: 3 SAIEWAEKYRPRTLGDVVGNRKAVQDLRKWAEEW---------------QSGIPEKRAVI 47
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
L G G+GKT++A + + ++ IE+NASD R A + + I GS
Sbjct: 48 LYGPAGIGKTSSAHALAGDMEWEVIELNASDQR---TAGVIEKIAGS------------- 91
Query: 462 LSANMDRSKHPKTVLIMDEVDGM-SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
+A+M+ K ++I+DE D + DRGG+ + IK + PII I ND Y +
Sbjct: 92 -AASMNTFFGGKRLIILDEADNLHGTADRGGMRAISGIIKSTLQPIILIANDIYGLT-PT 149
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ N C +++F + + + L ++ +EG+ ++ A+ ++A+ GD R AIN LQ +
Sbjct: 150 VRNICLEIKFGSVQSRSMVPALKKVCESEGVSCSQEAVLQIAENAGGDFRSAINDLQAAA 209
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
++ +DI ++ +D + F A+ K+F K ++ L S DLV +
Sbjct: 210 NGKKALEAEDIS----TAGRDVKENIFKAMQKIFKSTDCKRALESAYGLDESPEDLVHWI 265
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
+ I Y +++K +S DI+ ++++ Q +++ + +S+
Sbjct: 266 DENLPIQYARKDGDLEDIK------TGFGYLSKADIYLGRVKKRQNYRMWRYASM 314
>gi|428185974|gb|EKX54825.1| replication factor C subunit 1 [Guillardia theta CCMP2712]
Length = 821
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 143/260 (55%), Gaps = 32/260 (12%)
Query: 372 LAHWNEKFL--DTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429
+ +W + FL G+ ++GK+QN +++G PG+GKTT A ++ LGF+ +E+N
Sbjct: 332 ITNWLKGFLPESKGSNQDGKQQN------IILMTGPPGLGKTTIAHVLANFLGFEIVEIN 385
Query: 430 ASDSRGKADAKISKGIGGSNANS-IKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD 488
ASD R AD +I + +GG N I + +A + +SK +LIMDEVDGM++G+
Sbjct: 386 ASDDR-SAD-EIDQVLGGMMGNQPITNFFAPRG-TAVVKKSK--PLLLIMDEVDGMTSGE 440
Query: 489 RGGIADLI--ASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIA 546
+GG+ LI A+ K ++PIICICND +++ L+ +RF + +E+ RL ++
Sbjct: 441 KGGVQKLIQLATSKRDRLPIICICNDEHAKALR--------IRFYHLKGREVLPRLKEVC 492
Query: 547 NAEGLE-VNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD------DIRQRLLSSA 599
E + V + AL +A+ NGD+R IN LQ S V+ + +R++ +
Sbjct: 493 RLEQFKNVEDSALLTIAEIANGDLRTMINILQLARSSSDVLTLEMVDPSWMVRKKYMEMG 552
Query: 600 K-DEDISPFTAVDKLFGFNG 618
K E ++ FT D F G
Sbjct: 553 KTHESLTVFTLADSFFKVLG 572
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 178 GGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTG 237
GGF + RK PPH G K +P G PDCL G+ FVISG LDSLEREEA LI+ HGG+V
Sbjct: 219 GGFF-YVNRKPPPHYGTKPIPTGDPDCLKGMQFVISGVLDSLEREEAAHLIQTHGGKVVS 277
Query: 238 SVSKKTNYLLCDEDIAGAKSTKAKELGT-PFLTEDGLFDMIRASK 281
+VS K + L E+ K K +E+GT LTED L ++I +S+
Sbjct: 278 AVSGKVTHALVGEEAGETKMKKIREMGTIKTLTEDELLNLISSSR 322
>gi|448307509|ref|ZP_21497404.1| replication factor C large subunit [Natronorubrum bangense JCM
10635]
gi|445595681|gb|ELY49785.1| replication factor C large subunit [Natronorubrum bangense JCM
10635]
Length = 495
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 143/302 (47%), Gaps = 43/302 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + QL W W++ +A I+ GS
Sbjct: 4 WTEKYRPTTLSEVRGNNKARDQLKEWAQTWDDH------------------REAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + LG+ +E+NASD+R KAD I+ + A S
Sbjct: 46 PGVGKTSAAHALANDLGWPVMELNASDNR-KADV-------------IERIAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + ++++DE D D GG ++ +K + PI+ + N+ Y +SL N
Sbjct: 92 LTAGGAGRRLVVLDEADNFHGNADYGGSREVTRVVKNANQPIVLVANEFYDMS-QSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I EG+E E AL+++AD +GD+R A+N LQ ++ +
Sbjct: 151 CETVEFRDVSKRSIVPVLRDICRREGIEFEEDALKKIADATSGDLRSAVNDLQAVAETAE 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++ +D F +D L G LR +D +PD + I+
Sbjct: 211 RLTVDDV----VTGDRDTTEGIFDFLDALIKEEDAEGALRASYDVD---ENPDEMLNWIE 263
Query: 643 EN 644
+N
Sbjct: 264 DN 265
>gi|448637179|ref|ZP_21675555.1| replication factor C large subunit [Haloarcula sinaiiensis ATCC
33800]
gi|445764726|gb|EMA15870.1| replication factor C large subunit [Haloarcula sinaiiensis ATCC
33800]
Length = 508
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 154/347 (44%), Gaps = 49/347 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +A IL
Sbjct: 1 MDWTEKYRPTTLSEVRGNDKARDALKKWAETWDDH------------------REAVILY 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + + + IE+NASDSR K + I + A S
Sbjct: 43 GSPGIGKTSAAHALANDMEWPTIELNASDSRTK--------------DVINRVAGEAAKS 88
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + ++IMDE D + DRGG + A +K + P+I I N+ Y L
Sbjct: 89 GTLTAGGGGRRLVIMDEADNIHGNADRGGARAITALVKEASQPMILIANEYYEMS-NGLR 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N C D+ FR + I L + EG+E AL+ELA++ +GD+R A+ LQ ++ +
Sbjct: 148 NNCQDIEFRDVSPRSIVPVLRDLCRQEGVEYESDALQELAEQNSGDLRGAVKDLQAIAET 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++ +D F +D + G + ++ D+ + DL+ +
Sbjct: 208 TERLTADDV----VTGERDTTEGIFEYLDVVLKEAGAQDALEASYDVDETPDDLINWIED 263
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+Y + + RA E +S+ D + ++R Q +
Sbjct: 264 NMPKDYEGTE-----------LVRAYEFLSNADQWLGRVRETQNYSF 299
>gi|21226355|ref|NP_632277.1| replication factor C large subunit [Methanosarcina mazei Go1]
gi|42559489|sp|Q8Q084.1|RFCL_METMA RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|20904606|gb|AAM29949.1| replication factor C subunit [Methanosarcina mazei Go1]
Length = 610
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 171/355 (48%), Gaps = 44/355 (12%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
S++ W EKYRP+T ++VGN++ V+ L W W Q+ ++A I
Sbjct: 8 SAIEWAEKYRPRTLGDVVGNRKAVQDLRKWAEEW---------------QSGIPEKRAVI 52
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
L G G+GKT++A + + ++ IE+NASD R A + + I GS
Sbjct: 53 LYGPAGIGKTSSAHALAGDMEWEVIELNASDQR---TAGVIEKIAGS------------- 96
Query: 462 LSANMDRSKHPKTVLIMDEVDGM-SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
+A+M+ K ++I+DE D + DRGG+ + IK + PII I ND Y +
Sbjct: 97 -AASMNTFFGGKRLIILDEADNLHGTADRGGMRAISGIIKSTLQPIILIANDIYGLT-PT 154
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ N C +++F + + + L ++ +EG+ ++ A+ ++A+ GD R AIN LQ +
Sbjct: 155 VRNICLEIKFGSVQSRSMVPALKKVCESEGVSCSQEAVLQIAENAGGDFRSAINDLQAAA 214
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
++ +DI ++ +D + F A+ K+F K ++ L S DLV +
Sbjct: 215 NGKKALEAEDIS----TAGRDVKENIFKAMQKIFKSTDCKRALESAYGLDESPEDLVHWI 270
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
+ I Y +++K +S DI+ ++++ Q +++ + +S+
Sbjct: 271 DENLPIQYARKDGDLEDIK------TGFGYLSKADIYLGRVKKRQNYRMWRYASM 319
>gi|424814735|ref|ZP_18239913.1| replication factor C large subunit [Candidatus Nanosalina sp.
J07AB43]
gi|339758351|gb|EGQ43608.1| replication factor C large subunit [Candidatus Nanosalina sp.
J07AB43]
Length = 395
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 156/345 (45%), Gaps = 49/345 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP+T ++ G + K++ W +W + +K +L G
Sbjct: 2 WVEKYRPETLSDYRGASKEKKEIKNWAQNWEQ------------------GDKPVLLHGQ 43
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
G GKT+ + + LG++ +E NASD R K+ K +KE +
Sbjct: 44 AGTGKTSLVEALANDLGYELVETNASDVRTKSKLK----------EELKEATRQASFYGG 93
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ ++++DEVDGMS DRGG++++ + ++ P++ ND Y K+++L N
Sbjct: 94 -------QKLILVDEVDGMSGNSDRGGVSEISDIVDETRFPVVMTANDAYDSKIRTLRNK 146
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
++ IA L I EG+E + A + +A G +R AIN LQ +++
Sbjct: 147 SKTIKLDSVHTNSIAAHLRDILENEGIEYEDGAPKRIARSAGGQMRSAINDLQAVAMGQE 206
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
+ DD+ + + ++DI F A+ +F D DL D D I+EN
Sbjct: 207 ELLIDDL-EVIGGRNGNQDI--FEALKIVFNTTTASTAEDATNDLE-EDADTFLQWIREN 262
Query: 645 YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
P E K+ +A+A IS D+FN +IRR Q W+L
Sbjct: 263 ----TPR-----EYKKQGDVAKAYNYISKADLFNGRIRRRQNWKL 298
>gi|379005451|ref|YP_005261123.1| ATPase related to the helicase subunit of the Holliday junction
resolvase [Pyrobaculum oguniense TE7]
gi|375160904|gb|AFA40516.1| ATPase related to the helicase subunit of the Holliday junction
resolvase [Pyrobaculum oguniense TE7]
Length = 422
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 171/351 (48%), Gaps = 35/351 (9%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAIL 402
+L W EKYRPK+ ++V ++ L +W+ D T+ KK + +A +L
Sbjct: 2 ALPWVEKYRPKSFADVVDQEEAKYVLASWICARFRAPKDFCTRWAKKKDKEILDARAVLL 61
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL 462
+G PG+GKTT + + +G++ IE+NASD R A +KE+V
Sbjct: 62 AGPPGVGKTTLVHALAREIGYELIELNASDVR--------------TAERLKEVVGRGLR 107
Query: 463 SANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
++ + +++ DEVDG+ D GG+ +I I+ SK+PI+ N+ Y + + L
Sbjct: 108 EGSL--FGYGGKIVLFDEVDGLHVKEDAGGLEAIIEIIENSKVPIVMTANNPYDPRFRPL 165
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ-YMS 580
+ + ++ ++E+ + L +I +EG + E AL +A GD+R AIN LQ Y+S
Sbjct: 166 RDISLVVNLKRLSEEEVVEVLRRICTSEGAKCEEEALRSIAKSSLGDLRAAINDLQMYLS 225
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
+ DDI++ ++ +S F +D+++ DE +S + P
Sbjct: 226 GGRKTLTVDDIKR---VGERNPQLSMFEILDRVYRARW----FDEARAISFN-----PSF 273
Query: 641 IQENYINYRPSS--AGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
E Y + + EV+ +S+ A + +S D+F +I+R Q+W+L
Sbjct: 274 DWEQYFIWATETIPVVYKEVETMSV---AYDRLSKADMFIGRIKRTQEWEL 321
>gi|325958393|ref|YP_004289859.1| replication factor C large subunit [Methanobacterium sp. AL-21]
gi|325329825|gb|ADZ08887.1| Replication factor C large subunit [Methanobacterium sp. AL-21]
Length = 491
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 105/338 (31%), Positives = 159/338 (47%), Gaps = 54/338 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKY PK +E++GN ++ ++ W W GK + +L
Sbjct: 1 MLWTEKYSPKNFDEVLGNVKIKDEILNWTEDW----------LLGK------TSQCILLI 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT A L + IE+NASD R + +K + +LS
Sbjct: 45 GPPGTGKTTMAHLAANEFS-EYIELNASDKRS--------------YDILKNTIGESSLS 89
Query: 464 ANM--DRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
++ D K ++I+DEVDG+ DRGG + +K K PII + ND YS++L+S
Sbjct: 90 KSLYGDGLK----LIILDEVDGIHGNEDRGGTRAINQIVKDGKHPIIMMANDPYSKRLQS 145
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
L C+ L RK I L +I EG+E E + LA R NGD+R AIN L+ ++
Sbjct: 146 LKPKCNTLIMRKVHTNSIVSLLKKICVKEGVEFEEHVIRNLAKRSNGDLRTAINDLEVIA 205
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPL 639
I +D+ L S+KD+ ++ F V + K +R R+D S+P +
Sbjct: 206 RGQERITSEDLE---LLSSKDDIVNIFDTVRTVLKSKDPKRVRAAMRVD---SEPSFILE 259
Query: 640 LIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIF 677
+I EN P E ++++ I A E IS D++
Sbjct: 260 IITENI----PK-----EYEKVNEIQSAYEKISQADLY 288
>gi|448362195|ref|ZP_21550807.1| replication factor C large subunit [Natrialba asiatica DSM 12278]
gi|445649065|gb|ELZ02009.1| replication factor C large subunit [Natrialba asiatica DSM 12278]
Length = 511
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 130/272 (47%), Gaps = 38/272 (13%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + +L W W++ I+
Sbjct: 1 MDWTEKYRPTTLSEVRGNNKARDKLEEWATTWDDH------------------RDTVIVH 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + +G+ +E+NASDSRG A+ I+ + A S
Sbjct: 43 GSPGVGKTSAAHALATDMGWPVMELNASDSRG--------------ADVIERIAGEAAKS 88
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + + ++I+DE D D GG ++ +K + PI+ + N+ Y +SL
Sbjct: 89 GTLTGGESGRRLVILDEADNFHGNADYGGSREVTRVVKSANQPIVLVANEFYDMS-QSLR 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N C + FR K+ I L I E +E +E AL+++A+ +GD+R A+N LQ ++
Sbjct: 148 NACETIEFRDVSKRSIVPVLRDICRREDIEFDEDALKKIAEATSGDLRSAVNDLQAVAED 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ DD+ ++S +D F +D L
Sbjct: 208 ADRLTVDDV----VTSERDTTEGIFDFLDALI 235
>gi|313247250|emb|CBY15541.1| unnamed protein product [Oikopleura dioica]
Length = 432
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 141/277 (50%), Gaps = 39/277 (14%)
Query: 177 RGGFMNFGERKD--PPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGR 234
+ ++ F + P + G KE+P GA +CL GLTFV +G +SL R+E + LI+R+GG+
Sbjct: 165 KANYLKFKAKASAGPRNPGSKEIPNGADNCLEGLTFVATGNGESLGRDEMKSLIQRYGGK 224
Query: 235 VTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMK---------A 285
T SVS KT+Y++ E+ +K KAKE + ED + ++IR SKP K
Sbjct: 225 FTTSVSGKTSYVIVGEEPGESKIKKAKEKAVKLVDEDFILELIR-SKPAKKSKYEIVAEE 283
Query: 286 LAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAK-----RKGQNIQ 340
A E+K + +K A P+K+ +N E K + P + +SP K K +N
Sbjct: 284 EAAREAKNTPKKKAKISPRKAVKN-EVK-----EEPKRYIHVYSSPKKTMTALSKDEN-S 336
Query: 341 QSSLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE 397
+L W EKY+P +IV GN +L WL W + G K K A A
Sbjct: 337 NPALMWVEKYKPAEMKKIVGQSGNASCANKLQAWLKDWQKH--QGGPKDQRPKAKFAGAR 394
Query: 398 ----------KAAILSGSPGMGKTTAAKLVCQMLGFQ 424
+AA+LSG PG+GKTT A LV + LGF+
Sbjct: 395 GAIDPTGHTFRAALLSGPPGIGKTTTAHLVAKSLGFE 431
>gi|448578044|ref|ZP_21643479.1| replication factor C large subunit [Haloferax larsenii JCM 13917]
gi|445726585|gb|ELZ78201.1| replication factor C large subunit [Haloferax larsenii JCM 13917]
Length = 487
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 160/355 (45%), Gaps = 52/355 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +AAI+
Sbjct: 2 VDWTEKYRPSTLSEVRGNNKARDALAEWGKSWDDH------------------REAAIVH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + LG++ +E+NASD R A+ I+ A +
Sbjct: 44 GSPGIGKTSAAHALAADLGWETVELNASDQR--------------TADVIERFAGRAAKN 89
Query: 464 ANMDRSKH---PKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLK 519
A + S + ++I+DE D + DRGG + + +K S PI+ I N+ Y +
Sbjct: 90 ATLAGSSSGTSTRQLVILDEADNIHGNYDRGGASAITKLVKSSSQPIVLIANEFYDMS-R 148
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L N C ++ FR + I L I EG+E ALE +AD +GD+R A+N LQ +
Sbjct: 149 GLRNACREIEFRDVSARSIVPVLRDICRKEGVEFESAALERIADMNSGDLRSAVNDLQAI 208
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPL 639
+ I + ++ +D + F +D + + + D+ + DL
Sbjct: 209 AEGRDQI----TEENVVMGDRDRSVGLFEFLDAVLKEKPAQEALYTAYDVDETPDDLTKW 264
Query: 640 LIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
+ + + Y P DE +ARA E +++ D + ++R Q + + ++
Sbjct: 265 IEDKVSLVYEP-----DE------LARAYEFLANADRWLGRVRATQNYSYWRYAT 308
>gi|352683022|ref|YP_004893546.1| replication factor C, large subunit [Thermoproteus tenax Kra 1]
gi|350275821|emb|CCC82468.1| replication factor C, large subunit [Thermoproteus tenax Kra 1]
Length = 423
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 168/350 (48%), Gaps = 36/350 (10%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLA---HWNEKFLDTGTKRNGKKQNDASAEKAA 400
L W EK+RP++ +IV +Q L +W+ +E F + K+ +A ++
Sbjct: 2 LPWVEKHRPRSFKDIVDQEQAKYALASWVCAKFKVSEHFCRQWARSKDKEILEA---RSI 58
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
+L+G PG+GKTT + + ++ IE+NASD R A IKE+V
Sbjct: 59 LLAGPPGVGKTTLVHALANEINYELIELNASDVRTSA--------------RIKEVVGRG 104
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLK 519
++ + +++ DEVDG++ D GG+ ++ I+ +++PII N+ Y Q+L+
Sbjct: 105 LREGSL--FGYSGRIVLFDEVDGLNPKEDLGGLDSIVDMIETARVPIIMTANNPYDQRLR 162
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L + +K ++++ + L +I + E ++ E AL LA NGD+R AIN LQ
Sbjct: 163 PLREISYVVNLKKLDEEDVVEVLRRICSTEKIKCEEDALRALARSSNGDLRAAINDLQLF 222
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPL 639
+ V+ DDIR+ ++ +S F +DK+F N DE +S S P
Sbjct: 223 AEGKGVLTIDDIRR---IGERNPQLSMFEVLDKVFRANW----FDEARAISFS-----PS 270
Query: 640 LIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
E + + + R K + A A + +S DI I+R +W+L
Sbjct: 271 FDWEQFFAWAAENVPR-VYKDPHVAAAALDRLSKADIILSHIKRTGEWEL 319
>gi|327311518|ref|YP_004338415.1| replication factor C large subunit [Thermoproteus uzoniensis
768-20]
gi|326947997|gb|AEA13103.1| replication factor C large subunit [Thermoproteus uzoniensis
768-20]
Length = 422
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 170/350 (48%), Gaps = 36/350 (10%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLA---HWNEKFLDTGTKRNGKKQNDASAEKAA 400
L W EKYRP+T E+V ++ L +W+ E+F K KK ++A KA
Sbjct: 2 LPWVEKYRPRTFKEVVDQEEAKYALASWVCARFRAPEQFCKAWAKNKDKKISEA---KAV 58
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
+L+G PG+GKTT + + ++ +E+NASD R A I+E+V
Sbjct: 59 LLAGPPGIGKTTLVHALANEINYELVELNASDVR--------------TAERIREVVGRG 104
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLK 519
++ + +++ DEVDG++ D GG+ +I I+ +++PI+ N+ + Q+L+
Sbjct: 105 LREGSL--FGYAGRLILFDEVDGLNPKEDLGGLNSIIDLIETARVPIVMTANNPWDQRLR 162
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L + + R+ + ++ + L +I ++E ++ E AL LA +GD+R AIN LQ
Sbjct: 163 PLRDVSLVVSLRRLAEDDVVEVLRRICDSEKIKCEEDALRALARSSDGDLRAAINDLQLF 222
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPL 639
+ + DDI++ ++ +S F +D++F N D+ +S +P
Sbjct: 223 AGGKKTLTVDDIKR---VGERNPQLSMFEVLDRVFRANW----FDDARAIS-----FMPS 270
Query: 640 LIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
E + + + R K S A A + +S DI +IR+ +W+L
Sbjct: 271 FDWEQFFAWASENVPR-VYKDPSAAAAAMDRLSKADIILARIRKTGEWEL 319
>gi|383621832|ref|ZP_09948238.1| replication factor C large subunit [Halobiforma lacisalsi AJ5]
gi|448702682|ref|ZP_21700115.1| replication factor C large subunit [Halobiforma lacisalsi AJ5]
gi|445777243|gb|EMA28213.1| replication factor C large subunit [Halobiforma lacisalsi AJ5]
Length = 506
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 160/351 (45%), Gaps = 51/351 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + QL W W+E A I+ GS
Sbjct: 4 WTEKYRPTTLSEVRGNNKARDQLKEWAETWDEH------------------RDAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASD+R A+ I+ + + S
Sbjct: 46 PGVGKTSAAHALANDMGWPVMELNASDNR--------------QADVIERIAGEASKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + ++++DE D D GG ++ +K + PI+ + N+ Y +SL N
Sbjct: 92 LTGGGAGRRLVVLDEADNFHGNADYGGSREVTRVVKNANQPIVLVANEFYDMS-QSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I EG+E E ALE++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREGVEFEEEALEKIAESTSGDLRSAVNDLQAVAEEAE 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
+ +D+ ++S +D F +D L + + D+ + PD + I++N
Sbjct: 211 RLTVEDV----VTSERDTTEGIFDFLDTLIKEEDAQGALQASYDVDET-PDEMLNWIEDN 265
Query: 645 Y-INYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
+Y + +A A E +S+ D + ++R Q + + +S
Sbjct: 266 VPKDYEGAE-----------LADAYEFLSNADRWLGRVRATQDYSFWRYAS 305
>gi|145590270|ref|YP_001152272.1| replication factor C large subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514159|sp|A4WGV3.1|RFCL_PYRAR RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|145282038|gb|ABP49620.1| AAA ATPase, central domain protein [Pyrobaculum arsenaticum DSM
13514]
Length = 422
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 171/351 (48%), Gaps = 35/351 (9%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAIL 402
+L W EKYRPK+ ++V ++ L +W+ D T+ KK + +A +L
Sbjct: 2 ALPWVEKYRPKSFADVVDQEEAKYVLASWICARFRAPKDFCTRWAKKKDKEILDARAVLL 61
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL 462
+G PG+GKTT + + +G++ IE+NASD R A +KE+V
Sbjct: 62 AGPPGVGKTTLIHALAREIGYELIELNASDVR--------------TAERLKEVVGRGLR 107
Query: 463 SANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
++ + +++ DEVDG+ D GG+ +I I+ SK+PI+ N+ Y + + L
Sbjct: 108 EGSL--FGYGGKIVLFDEVDGLHVKEDAGGLEAIIEIIENSKVPIVMTANNPYDPRFRPL 165
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ-YMS 580
+ + ++ ++E+ + L +I +EG + E AL +A GD+R AIN LQ Y+S
Sbjct: 166 RDISLVVNLKRLSEEEVVEVLRRICTSEGAKCEEEALRSIAKSSLGDLRAAINDLQMYLS 225
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
+ DDI++ ++ +S F +D+++ DE +S + P
Sbjct: 226 GGRKTLTVDDIKR---VGERNPQLSMFEILDRVYRARW----FDEARAISFN-----PSF 273
Query: 641 IQENYINYRPSS--AGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
E Y + + E++ +S+ A + +S D+F +I+R Q+W+L
Sbjct: 274 DWEQYFIWATETIPVVYKEIETMSV---AYDRLSKADMFIGRIKRTQEWEL 321
>gi|388581933|gb|EIM22239.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 680
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 157/345 (45%), Gaps = 55/345 (15%)
Query: 313 KSTSAPKAPIERMKT----VASPAKRKGQNIQQS-SLTWTEKYRPKTPNEIVGNQQLVKQ 367
KS+S + P+ ++ T + S + Q + S + WT+KYRP +++G+ +L +Q
Sbjct: 52 KSSSCLETPVHKLITELNSLPSTSSVPTQKVASSDTRLWTDKYRPHKFTDLMGDDRLNRQ 111
Query: 368 LHTWLAHWNEKFLDTGTKRN-GKKQNDASA-------------EKAAILSGSPGMGKTTA 413
+ +WL W++ T + K++ DA E+ ++SG PG+GKTT
Sbjct: 112 VMSWLKEWDQCVFGKKTADSLYKRKRDAEPFAYRDPYNLGRPQERVMLISGPPGLGKTTL 171
Query: 414 AKLVCQMLGFQAIEVNASDSRG--KADAKISKGIGGSNANSIKELVSNEALSANMDRSKH 471
A ++ + G++ EVNASD R D K+ + + N I +D K
Sbjct: 172 AYVIAKQAGYRVFEVNASDDRSARTVDEKLKSAL---DVNPI-------TFDGKID--KR 219
Query: 472 PKTVLIMDEVDGMSAGDRGGIADLIASIKISKIP----------------IICICNDRYS 515
P VLI DE+DG + GG + +I +P IICICND Y+
Sbjct: 220 PTLVLI-DEIDGATGEGSGGFVRQLINITNDHVPKKRKNGTTQPRLLLRPIICICNDLYA 278
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
L+SL +R++ P RL I E + + +L LA+ GDIR +N
Sbjct: 279 PSLRSLRPISRIVRYKPPSMLSTVTRLKDICGEEEMYADTKSLNALAEASGGDIRNCLNT 338
Query: 576 LQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK 620
LQ+M + DI Q + +++KD S + + ++F K
Sbjct: 339 LQFMKNNEM-----DIHQAITNNSKDTSRSVPSVMQQVFKLQKSK 378
>gi|448324332|ref|ZP_21513763.1| replication factor C large subunit [Natronobacterium gregoryi SP2]
gi|445619015|gb|ELY72562.1| replication factor C large subunit [Natronobacterium gregoryi SP2]
Length = 493
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 156/347 (44%), Gaps = 53/347 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + +L W W+E A I+ GS
Sbjct: 4 WTEKYRPTTLSEVRGNNKARDKLQEWADTWDEH------------------RDAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+ + A S
Sbjct: 46 PGIGKTSAAHALANDMGWPVMELNASDSRG--------------ADVIERVAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + ++I+DE D D GG ++ +K + P++ + N+ Y +SL N
Sbjct: 92 LTGGGAGRRLVILDEADNFHGNADYGGSREVTRVVKEADQPVVLVANEFYEMS-QSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I EG+E E AL+++A+ +GD+R A+N LQ ++
Sbjct: 151 CEAIEFRDVSKRSIVPVLRDICRREGIEFEEEALKQIAEETSGDLRSAVNDLQAVAEEAE 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPLLIQ 642
+ D ++ +D F +D L G LR +D + PD + I+
Sbjct: 211 RLTVADA----VTGERDTTEGIFDYLDALIKEEDAEGALRASYDVDET---PDDLLNWIE 263
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+N P DE +A A E +S+ D + ++R Q +
Sbjct: 264 DNV----PKDYEGDE------LADAYEFLSNADRWLGRVRSTQDYSF 300
>gi|448392808|ref|ZP_21567438.1| replication factor C large subunit [Haloterrigena salina JCM 13891]
gi|445664127|gb|ELZ16847.1| replication factor C large subunit [Haloterrigena salina JCM 13891]
Length = 498
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 142/302 (47%), Gaps = 43/302 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + +L W W++ A I+ GS
Sbjct: 4 WTEKYRPTTLSEVRGNNKARDKLEEWAESWDDH------------------RDAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+ + + S
Sbjct: 46 PGVGKTSAAHALAGDMGWPVMELNASDSRG--------------ADVIERVAGEASKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++I+DE D D GG A++ +K + PI+ + N+ Y +SL N
Sbjct: 92 LTGGEAGRRLVILDEADNFHGNADYGGSAEVTRVVKDANQPIVLVANEFYDMS-QSLRNS 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I E +E E ALE++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREDIEFEEEALEKIAEDTSGDLRSAVNDLQAVAEEAE 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPLLIQ 642
+ +D+ ++ +D F +D L G LR +D +PD + I+
Sbjct: 211 RLTVEDV----VTGQRDTTEGIFDFLDALIKEEDAEGALRASYDVD---ENPDEMLNWIE 263
Query: 643 EN 644
+N
Sbjct: 264 DN 265
>gi|268325558|emb|CBH39146.1| putative replication factor C, large subunit [uncultured archaeon]
Length = 466
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 106/368 (28%), Positives = 180/368 (48%), Gaps = 55/368 (14%)
Query: 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK 398
+Q+SS WTEKYRPK +E+VGN++ +++L++W A ++K
Sbjct: 1 MQESSEEWTEKYRPKKLSEVVGNEKAIEELNSW------------------ADGVAKSKK 42
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
A IL G PG GKT+AA + ++ IE+NASD R NA I+ +V
Sbjct: 43 AVILLGPPGCGKTSAAYALASERDWEVIELNASDQR--------------NAGVIRSIVG 88
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQK 517
+ S R+ ++I+DE D + DRGG + +K S PII I ND+
Sbjct: 89 PASASNTFSRATR---LIILDEADNIHGNEDRGGTKAITEIVKRSTQPIILIANDKLGMG 145
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
++L+ C + F++ + + + L I+NAEG ++++ L +A NGD+R AIN L
Sbjct: 146 -RTLLRNCKLINFQRIKPGTVFRVLKVISNAEGRDIDDEVLLIMAKNANGDLRSAINDL- 203
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLV 637
+++S+S +K + + + +D + F + K+F G M E + S+ D
Sbjct: 204 -LAISMSELKIE--AGSIATGERDVEEDIFAVLKKIF----GGYDMQEALT-SLYGLDKT 255
Query: 638 P-LLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQ-SSSL 695
P IQ + N+ + + L ++RA D+F + RR + ++ + +SSL
Sbjct: 256 PEESIQWIHKNFSYQYNDKSFLHGLQYLSRA-------DMFLGRARRRENFKFWRYTSSL 308
Query: 696 ASCIIPAA 703
C + +A
Sbjct: 309 MVCAVLSA 316
>gi|384499715|gb|EIE90206.1| hypothetical protein RO3G_14917 [Rhizopus delemar RA 99-880]
Length = 817
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 129/281 (45%), Gaps = 48/281 (17%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL------DTGTKRNGKKQNDASAE-- 397
W ++YRPKT +++ G+Q L +++ W+ W+ +T + ++ DA +
Sbjct: 176 WVDRYRPKTYSDLTGDQSLFREVLKWVKQWDYCVFRKLPPQETQRDKAMRQYEDARQQNT 235
Query: 398 --------------------KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA 437
K +LSG PG GKTT A ++ +M G+ IE+NASD R
Sbjct: 236 RRFRRFDPQETNDPLLRPEKKILLLSGPPGFGKTTVAHVMARMAGYNIIEINASDDRTGD 295
Query: 438 DAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA--GDRGGIADL 495
K I++ S+E M ++ P V+I DE+DG+S+ G+
Sbjct: 296 VVKTKIKSALEMQAIIRDANSSETGERTMTMNQKPNLVII-DEIDGVSSKSGNSDSFISQ 354
Query: 496 IASIKISKI-----------------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEI 538
+ + +I PIICICND Y+ L+ L + + FR+ +
Sbjct: 355 LVQLATVEIGGEQSKKSKQKQKPLLRPIICICNDVYAPALRPLRSIAQVMHFREVPMITV 414
Query: 539 AKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
AKRL +I EGLE + L LA+ +GD+R IN LQY+
Sbjct: 415 AKRLGEICENEGLETDLGTLRMLAETADGDLRSCINTLQYI 455
>gi|435850859|ref|YP_007312445.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
gi|433661489|gb|AGB48915.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
Length = 500
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 180/379 (47%), Gaps = 49/379 (12%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRPK+ +++GN ++QL +W W LD GT +KA +L G
Sbjct: 7 WAEKYRPKSLADVLGNPTAIRQLRSWAEQW----LD-GTPE----------QKAVLLHGP 51
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
G+GKT+ A + Q + ++ IE+NASD R A + + I GS S +
Sbjct: 52 AGVGKTSTAHALAQDMEWEVIELNASDQR---TADVIERIAGS--------ASRMSTLGG 100
Query: 466 MDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
M K ++++DE D M DRGG + I + PI+ I ND Y S+ +
Sbjct: 101 MSS----KRLIVLDEADNMHGTSDRGGPKAIGNIILATGQPIVLIANDAYGIP-SSVRSN 155
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
+++F + + + L Q+A EGL +E++A+ +GD+R AIN LQ +++ +
Sbjct: 156 LLEIKFNALQTRSMIPALKQVAQKEGLMCGVGIIEKIAENADGDMRSAINDLQAVAVGRN 215
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I +DI ++ +D S F ++++F K ++ L S DL+ + +
Sbjct: 216 EINIEDIA----TAERDNKESIFKVMERIFKGTDAKTALETTYGLDESPEDLIHWIDENL 271
Query: 645 YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS-LASCIIPAA 703
+ Y AG++E K I E IS D+F ++++ Q + + + +S L +C
Sbjct: 272 PVQY----AGKEEGKVTDSIKNGYEYISRADLFLGRVQKRQNYLMWRYASVLMTC----- 322
Query: 704 LMHGQRETLEQGERNFNRF 722
G + Q +R F +F
Sbjct: 323 ---GTVVSKSQPKRGFVKF 338
>gi|284165192|ref|YP_003403471.1| ATPase AAA [Haloterrigena turkmenica DSM 5511]
gi|284014847|gb|ADB60798.1| AAA ATPase central domain protein [Haloterrigena turkmenica DSM
5511]
Length = 497
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 144/304 (47%), Gaps = 43/304 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + +L W W+ G + A I+
Sbjct: 1 MDWTEKYRPTTLSEVRGNNKARDKLEEWAETWD-----------GHRD-------AVIVH 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + +G+ +E+NASDSRG A+ I+ + + S
Sbjct: 43 GSPGVGKTSAAHALAGDMGWPVMELNASDSRG--------------ADVIERIAGEASKS 88
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + + ++I+DE D D GG A++ +K + PI+ + N+ Y +SL
Sbjct: 89 GTLTGGEAGRRLVILDEADNFHGNADYGGSAEVTRVVKDANQPIVLVANEFYDMS-QSLR 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N C + FR K+ I L I E +E E ALE++A+ +GD+R A+N LQ ++
Sbjct: 148 NSCETIEFRDVSKRSIVPVLRDICRREDVEFEEEALEKIAEDTSGDLRSAVNDLQAVAEE 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPLL 640
+ +D+ ++ +D F +D L G LR +D +PD +
Sbjct: 208 AERLTVEDV----VTGQRDTTEGIFDFLDALIKEEDAEGALRASYDVD---ENPDEMLNW 260
Query: 641 IQEN 644
I++N
Sbjct: 261 IEDN 264
>gi|374636438|ref|ZP_09708008.1| AAA ATPase central domain protein [Methanotorris formicicus
Mc-S-70]
gi|373558999|gb|EHP85314.1| AAA ATPase central domain protein [Methanotorris formicicus
Mc-S-70]
Length = 482
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 167/358 (46%), Gaps = 60/358 (16%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPKT E+ G+ ++ ++L W+ + + K +N K IL
Sbjct: 2 LEWVEKYRPKTLKEVAGHNEIKEKLKKWI------------EDHIKGKNP----KPIILV 45
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G+PG GKTT A + + GF IE+NASD R +A +I+++V +
Sbjct: 46 GNPGCGKTTLAHALARDYGFDVIELNASDKRNRA--------------AIRQIVG----T 87
Query: 464 ANMDRSKHPKTVLI-MDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
A+ +S K +LI +DEVDG+S D GG+++++ IK +K PII ND Y LK L
Sbjct: 88 ASTSKSLTGKNILIILDEVDGISGTEDSGGVSEILKVIKEAKNPIILTANDIYKPTLKPL 147
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
+ C + I L +IA E L+V+E L+ +A GD+R AIN L+ ++L
Sbjct: 148 RDVCEVINVPNVHTNTILAVLKRIAKKENLDVDEKTLKIIAKHSGGDLRAAINDLEALAL 207
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLI 641
I Q + S D D + T D + RI L + D+ + +
Sbjct: 208 G------GKINQEIASHLPDRD-TERTIFDAM------------RIILKTTHYDIATMAL 248
Query: 642 QE-----NYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
+ + E K+L I RA + +S DIF ++ + Q + L + +S
Sbjct: 249 MNCSEDLQTVEEWLAENIPKEYKKLEDIERAFDYLSKADIFLGRVYKRQYFGLWRFAS 306
>gi|55378501|ref|YP_136351.1| replication factor C large subunit [Haloarcula marismortui ATCC
43049]
gi|57013000|sp|Q5V1F7.1|RFCL_HALMA RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|55231226|gb|AAV46645.1| replication factor C large subunit [Haloarcula marismortui ATCC
43049]
Length = 508
Score = 122 bits (306), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 153/347 (44%), Gaps = 49/347 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +A IL
Sbjct: 1 MDWTEKYRPTTLSEVRGNDKARDALKKWAETWDDH------------------REAVILY 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + + + IE+NASDSR K + I + A S
Sbjct: 43 GSPGIGKTSAAHALANDMEWPTIELNASDSRTK--------------DVINRVAGEAAKS 88
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + ++IMDE D + DRGG + A +K + P+I I N+ Y L
Sbjct: 89 GTLTAGGGGRRLVIMDEADNIHGNADRGGARAITALVKEASQPMILIANEYYEMS-NGLR 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N C D+ FR + I L + EG+E AL+ELA++ +G +R A+ LQ ++ +
Sbjct: 148 NNCQDIEFRDVSPRSIVPVLRDLCRQEGVEYESDALQELAEQNSGGLRGAVKDLQAIAET 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++ +D F +D + G + ++ D+ + DL+ +
Sbjct: 208 TERLTADDV----VTGERDTTEGIFEYLDVVLKEAGAQDALEASYDVDETPDDLINWIED 263
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+Y + + RA E +S+ D + ++R Q +
Sbjct: 264 NMPKDYEGTE-----------LVRAYEFLSNADQWLGRVRETQNYSF 299
>gi|429193387|ref|YP_007179065.1| AAA ATPase [Natronobacterium gregoryi SP2]
gi|429137605|gb|AFZ74616.1| AAA ATPase [Natronobacterium gregoryi SP2]
Length = 535
Score = 122 bits (306), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 156/347 (44%), Gaps = 53/347 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + +L W W+E A I+ GS
Sbjct: 46 WTEKYRPTTLSEVRGNNKARDKLQEWADTWDEH------------------RDAVIVHGS 87
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+ + A S
Sbjct: 88 PGIGKTSAAHALANDMGWPVMELNASDSRG--------------ADVIERVAGEAAKSGT 133
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + ++I+DE D D GG ++ +K + P++ + N+ Y +SL N
Sbjct: 134 LTGGGAGRRLVILDEADNFHGNADYGGSREVTRVVKEADQPVVLVANEFYEMS-QSLRNA 192
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I EG+E E AL+++A+ +GD+R A+N LQ ++
Sbjct: 193 CEAIEFRDVSKRSIVPVLRDICRREGIEFEEEALKQIAEETSGDLRSAVNDLQAVAEEAE 252
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPLLIQ 642
+ D ++ +D F +D L G LR +D + PD + I+
Sbjct: 253 RLTVADA----VTGERDTTEGIFDYLDALIKEEDAEGALRASYDVDET---PDDLLNWIE 305
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+N P DE +A A E +S+ D + ++R Q +
Sbjct: 306 DNV----PKDYEGDE------LADAYEFLSNADRWLGRVRSTQDYSF 342
>gi|448399879|ref|ZP_21571112.1| replication factor C large subunit [Haloterrigena limicola JCM
13563]
gi|445668332|gb|ELZ20962.1| replication factor C large subunit [Haloterrigena limicola JCM
13563]
Length = 493
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 142/302 (47%), Gaps = 43/302 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + QL W W++ ++ I+ GS
Sbjct: 4 WTEKYRPTTLSEVRGNNKARDQLKEWAETWDDH------------------RQSVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+ + A S
Sbjct: 46 PGVGKTSAAHALAADMGWPVMELNASDSRG--------------ADVIERIAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++I+DE D D GG ++ +K + PI+ + N+ Y +SL N
Sbjct: 92 LTGGEAGRRLVILDEADNFHGNADYGGSREVTRVVKNANQPIVLVANEFYDMS-QSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I E +E E AL ++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREDIEFEEEALAKIAESTSGDLRSAVNDLQAVAEETE 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPLLIQ 642
+ +D+ ++S +D F +D L G LR +D + PD + I+
Sbjct: 211 RLTVEDV----VTSERDTTEGIFDFLDDLIKEKDAEGALRASYDVDET---PDEMLNWIE 263
Query: 643 EN 644
+N
Sbjct: 264 DN 265
>gi|355571069|ref|ZP_09042339.1| Replication factor C large subunit [Methanolinea tarda NOBI-1]
gi|354826351|gb|EHF10567.1| Replication factor C large subunit [Methanolinea tarda NOBI-1]
Length = 468
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 162/344 (47%), Gaps = 60/344 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP +EIVGN ++ Q+ W W+ + +K IL
Sbjct: 1 MDWAEKYRPAHLDEIVGNTAILHQMLDWARGWD------------------AGKKPLILY 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT+A + +G++AIE+NASD R +A + G G + A+ +
Sbjct: 43 GKPGTGKTTSAHALASDMGWEAIELNASDQRTRAVIEKVAGSGSTTASFSGK-------- 94
Query: 464 ANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ ++I+DE D + DRGG ++ +++++ P+I I ND Y+ +
Sbjct: 95 ---------RRLVIIDEADNLHGTADRGGARAILELLRVARQPVILIANDLYAVP-GEIR 144
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N C L+FR + + I RL I +AE + +E AL+++A+ GD+R AI+ LQ
Sbjct: 145 NRCEALQFRAIQARSIVPRLRFICSAEKIACSENALKKIAESSGGDMRAAIHMLQ----- 199
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK--LRMDERIDLSMSDPDLVPLL 640
+ D + + + SAKD + F + L+G + LR+ D PD +
Sbjct: 200 AAAAGRDRLDEDISISAKDTRSTIFDVIGALYGRTDPESLLRLAYDAD---EPPDTLIQW 256
Query: 641 IQENYINYRPSSAGRDEVKRL----SLIARAAESISDGDIFNVQ 680
I+ N AG D ++ L S + RA I GD + +Q
Sbjct: 257 IEANV-------AGMDRIQDLDTAYSALLRADTYI--GDTYRLQ 291
>gi|126458632|ref|YP_001054910.1| replication factor C large subunit [Pyrobaculum calidifontis JCM
11548]
gi|158513487|sp|A3MS27.1|RFCL_PYRCJ RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|126248353|gb|ABO07444.1| transcriptional regulator, Fis family [Pyrobaculum calidifontis JCM
11548]
Length = 421
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/354 (27%), Positives = 173/354 (48%), Gaps = 44/354 (12%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHW-------NEKFLDTGTKRNGKKQNDASA 396
+ W EKYRPK+ +EIV NQ+ KQ+ LA W ++F KR K+ +A
Sbjct: 3 IPWVEKYRPKSFSEIV-NQEEAKQI---LASWICTRFKAPQEFCARWAKRRDKEIKEA-- 56
Query: 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
+A +L G PG+GKTT + + +G++ +E+NASD R I+++
Sbjct: 57 -RAVLLWGPPGIGKTTLVHALAKEIGYELVELNASDVR--------------TGERIRQV 101
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYS 515
V A++ + +++ DEVDG+ D GG+ ++ I+ +K+PI+ N+ +
Sbjct: 102 VGRGLREASL--FGYAGKIVLFDEVDGLHVKEDLGGLEAILNLIETAKVPIVLTANNPFD 159
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
KL+ L + + ++ + E+ + L +I +EG + E AL LA GD+R AIN
Sbjct: 160 PKLRPLRDISLVVGLKRLSEDEVVEVLKRICASEGAKCEEEALRSLAKSSYGDLRAAIND 219
Query: 576 LQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPD 635
LQ V+ DDI++ + ++ +S F +D+++ DE +S +
Sbjct: 220 LQLYLAGRKVLTVDDIKR---AGERNPQLSMFEILDRVYKARW----FDEARAVSFN--- 269
Query: 636 LVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
P E Y + + K L +++ A + +S D+F ++R Q+W+L
Sbjct: 270 --PSFDWEQYFVWALETIP-IVYKDLEVMSEAFDRLSKADMFIGIVKRTQEWEL 320
>gi|448609953|ref|ZP_21660803.1| replication factor C large subunit [Haloferax mucosum ATCC
BAA-1512]
gi|445745312|gb|ELZ96779.1| replication factor C large subunit [Haloferax mucosum ATCC
BAA-1512]
Length = 484
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 158/354 (44%), Gaps = 64/354 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP + +E+ GN + L W W++ +A ++
Sbjct: 2 VDWTEKYRPSSLSEVRGNNKARDALAEWANSWDDH------------------REAVVVH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSR---------GKADAKISKGIGGSNANSIK 454
GSPG+GKT+AA + +G++ +E+NASD R G+A AK + G S S +
Sbjct: 44 GSPGIGKTSAAHALASDMGWETVELNASDQRTGDVIERFAGRA-AKNATLSGSSTGTSTR 102
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDR 513
+LV I+DE D + DRGG + + +K S PI+ I N+
Sbjct: 103 QLV-------------------ILDEADNIHGNYDRGGSSAVTRLVKSSSQPIVLIANEF 143
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
Y + L N C ++ FR + I L I EGLE ALE +AD +GD+R A+
Sbjct: 144 YDMS-RGLRNACQEIEFRDVSARSIVPVLRDICRKEGLEFEPDALERIADMNSGDLRSAV 202
Query: 574 NQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSD 633
N LQ ++ I +D+ + +D + F +D + + + D+ +
Sbjct: 203 NDLQAIAEGRDEITEEDV----IMGDRDRSVGLFEFLDAVLKEESAQDALYTAYDVDETP 258
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
DL + + + Y P DE +ARA E +++ D + ++R Q +
Sbjct: 259 DDLTKWIEDKVSLVYEP-----DE------LARAYEFLANADRWLGRVRATQNY 301
>gi|448739048|ref|ZP_21721068.1| replication factor C large subunit [Halococcus thailandensis JCM
13552]
gi|445800862|gb|EMA51210.1| replication factor C large subunit [Halococcus thailandensis JCM
13552]
Length = 491
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 144/305 (47%), Gaps = 45/305 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W+E +A +L
Sbjct: 1 MDWTEKYRPSTLSEVRGNNKARDALAEWAETWDEH------------------REAVVLH 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL- 462
G+PG+GKT+AA + + + IE+NAS+ R K S+ E V+ EA
Sbjct: 43 GAPGVGKTSAAHALAADMDWPTIELNASNQRTK---------------SVVERVAGEAAK 87
Query: 463 SANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
S + + ++IMDE D + DRGG + +K + P++ I N+ Y KSL
Sbjct: 88 SGTLTGGSAGRRLVIMDEADNLHGNVDRGGSRAITGLVKEASQPMVLIANEFYDMS-KSL 146
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
N C + FR + I L I E +E ++ AL+ +A+R +GD+R A+N LQ ++
Sbjct: 147 RNACETIEFRDVSARSILPVLRDICRREEVEYDDEALDAIAERNSGDLRGAVNDLQALAE 206
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPL 639
S + DD+ ++S +D+ F +D L G LR +D + PD +
Sbjct: 207 STERLTADDV----VTSDRDKTTGIFDFLDALIKEEDAEGALRSSYDVDET---PDDLIN 259
Query: 640 LIQEN 644
I++N
Sbjct: 260 WIEDN 264
>gi|171186450|ref|YP_001795369.1| replication factor C large subunit [Pyrobaculum neutrophilum
V24Sta]
gi|226739140|sp|B1YC69.1|RFCL_THENV RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|170935662|gb|ACB40923.1| AAA ATPase central domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 422
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 165/348 (47%), Gaps = 31/348 (8%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRPK +EIV ++ L +W+ + + K++ + + KA +L+
Sbjct: 3 IPWVEKYRPKAFSEIVNQEEAKTLLASWICARFRAPKEFCARWAKKREKEVAEAKAVLLA 62
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT + + + ++ IE+NASD R K+ G G ++
Sbjct: 63 GPPGIGKTTVVHALAREIRYELIELNASDIRTGERIKLVVGRGLKESSLFG--------- 113
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ +++ DEVDG+ D GG+ ++ ++ +K+PI+ N+ Y K + L
Sbjct: 114 -------YEGKLVLFDEVDGLHVKEDEGGLEAIVEIVETAKVPIVMTANNPYDPKFRPLR 166
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ-YMSL 581
+ + ++ ++E+ + L +I AEG + E AL +A GD+R AIN LQ Y+S
Sbjct: 167 DISLVVNLKRLSEEEVVEVLRRICTAEGAKCEEEALRSIAKSSLGDLRAAINDLQMYLSG 226
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLI 641
+ DDI++ ++ +S F +D+++ DE +S + P
Sbjct: 227 GRKTLTVDDIKR---VGERNPQLSMFEVLDRVYRARW----FDEARAVSFN-----PSFD 274
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
E Y + + K + A A + +S D+F +I+R Q+W+L
Sbjct: 275 WEQYFLWALETVP-VVYKDVETAAAAYDRLSKADMFLGRIKRMQEWEL 321
>gi|18312141|ref|NP_558808.1| replication factor C large subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559512|sp|Q8ZYK3.1|RFCL_PYRAE RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|18159574|gb|AAL62990.1| replication factor C large subunit [Pyrobaculum aerophilum str.
IM2]
Length = 422
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 173/349 (49%), Gaps = 31/349 (8%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAIL 402
+L W EKYRPK+ EIV ++ L +W+ + T+ K+ + + KA +L
Sbjct: 2 ALPWIEKYRPKSFAEIVNQEEAKYTLASWICLKFRAPKEFCTRWAKKRDKEVAEAKAILL 61
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL 462
+G PG+GKTT + + + ++ IE+NASD R A+ +++++
Sbjct: 62 AGPPGVGKTTLVHALAREIRYELIELNASDVR--------------TADRLRQVIGRGLR 107
Query: 463 SANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
+++ +++ DEVDG+ D+GG+ ++I I+ +KIPII N+ Y K + L
Sbjct: 108 ESSL--FGFEGKMVLFDEVDGLHVKEDKGGLEEIIEIIETAKIPIIMTANNPYDPKFRPL 165
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ-YMS 580
+ + ++ ++E+ + L +I +EG + E AL +A GD+R AIN LQ Y+S
Sbjct: 166 RDISLVVNLKRLSEEEVVEVLRRICTSEGAKCEEEALRSIAKSSMGDLRAAINDLQMYLS 225
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
++ DDI++ ++ +S F +D+++ DE +S + P
Sbjct: 226 GGRRILTLDDIKR---VGERNPQLSMFEILDRVYKARW----FDEARAVSFN-----PSF 273
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
E Y + S K L + + A + +S D+F +I+R Q+W+L
Sbjct: 274 DWEQYFIWALESIP-VVYKDLEIASTAYDRLSKADVFMGRIKRTQEWEL 321
>gi|435848165|ref|YP_007310415.1| AAA ATPase [Natronococcus occultus SP4]
gi|433674433|gb|AGB38625.1| AAA ATPase [Natronococcus occultus SP4]
Length = 495
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 128/270 (47%), Gaps = 38/270 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE YRP T +E+ GN + QL W W++ KA I+ GS
Sbjct: 4 WTETYRPTTLSEVRGNNKARDQLEEWAESWDDH------------------RKAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASDSRG A+ I+ + + S
Sbjct: 46 PGVGKTSAAHALANDMGWPVMELNASDSRG--------------ADVIERVAGEASKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + ++I+DE D D GG ++ +K + P++ I N+ Y +SL +
Sbjct: 92 LTAGGSGRRLVILDEADNFHGNADYGGSREVTRVVKDASQPMVLIANEFYEMS-QSLRDA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I E +E E ALE++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREDVEFEEEALEKIAESTSGDLRSAVNDLQAVAEEAE 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ +D+ ++S +D F +D L
Sbjct: 211 RLTVEDV----VTSERDTTEGIFDFLDALI 236
>gi|289580410|ref|YP_003478876.1| ATPase AAA [Natrialba magadii ATCC 43099]
gi|448284079|ref|ZP_21475344.1| replication factor C large subunit [Natrialba magadii ATCC 43099]
gi|289529963|gb|ADD04314.1| AAA ATPase central domain protein [Natrialba magadii ATCC 43099]
gi|445572174|gb|ELY26716.1| replication factor C large subunit [Natrialba magadii ATCC 43099]
Length = 514
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 34/247 (13%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE YRP T +E+ GN + +L W W++ + A I+ GS
Sbjct: 4 WTETYRPTTLSEVRGNNKARDKLKEWAETWDDH------------------QDAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + LG+ +E+NASDSRG A+ I+ + A S
Sbjct: 46 PGVGKTSAAHALANDLGWPVMELNASDSRG--------------ADVIERIAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++I+DE D D GG ++ +K + PI+ + N+ Y +SL N
Sbjct: 92 LTGGESGRRLVILDEADNFHGNADYGGSREVTRVVKSANQPIVLVANEFYDMS-QSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I E +E + AL+++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREDIEFEDDALQKIAEDTSGDLRSAVNDLQAVAEEAE 210
Query: 585 VIKYDDI 591
+ DD+
Sbjct: 211 RLTVDDV 217
>gi|393245719|gb|EJD53229.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 584
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 131/272 (48%), Gaps = 48/272 (17%)
Query: 338 NIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASA- 396
N+ + L W ++YRPK +++G++++ ++ W+ W+ F GT R K+Q+D
Sbjct: 21 NVPEDQL-WVDRYRPKRFTDLLGDERVHRETMAWVKQWD--FCVFGTNRRRKRQHDEMEE 77
Query: 397 ----------EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIG 446
E+ +LSG PG+GKTT A +V + G+ +E+NASD+R
Sbjct: 78 ENNDELQRPRERILLLSGPPGLGKTTLAHVVARQAGYNVLEINASDAR------------ 125
Query: 447 GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS-AGDRGG-----IADLIASIK 500
+ I + V S + SK P ++++DE+DG + AGD G + L
Sbjct: 126 --TGSVIDDRVRPALESGSAVGSKKP-VLVVIDEIDGATGAGDNSGHFVQKLLQLTFDKP 182
Query: 501 ISK-------------IPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
+ K PIICICND Y+ L L + +RF+KP + KRL +I
Sbjct: 183 VKKGRKKEQGGARPLRRPIICICNDLYASSLTKLRPHARIIRFQKPTDLHLVKRLREICE 242
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
EG+ + AL L GD+R +N LQ++
Sbjct: 243 REGMRPDTRALSTLVGVAQGDMRSCLNALQFV 274
>gi|383319999|ref|YP_005380840.1| replication factor C large subunit [Methanocella conradii HZ254]
gi|379321369|gb|AFD00322.1| replication factor C large subunit [Methanocella conradii HZ254]
Length = 533
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 108/395 (27%), Positives = 183/395 (46%), Gaps = 64/395 (16%)
Query: 337 QNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASA 396
+ + Q+ W EKYRP + N+IVGN+ VK L W +N S
Sbjct: 21 EGMAQNHEDWAEKYRPVSLNDIVGNEAAVKALKKW------------------AENFDSG 62
Query: 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
++A IL G PG+GKT+AA + +G+ IE+NASD R K ++I ++
Sbjct: 63 KRAVILYGGPGVGKTSAALALAHDMGWDYIEMNASDQRTK--------------DAINKV 108
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYS 515
+ + + ++ + +LI+DE D + DRGG + +I+ IK S PI+ I ND Y+
Sbjct: 109 AGSASRTGTFGGARE-RRLLILDEADNLHGTYDRGGESAMISVIKSSGQPIVLIANDYYA 167
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
K L + ++FR I K L +I E + AL ++A+R + D+R AIN
Sbjct: 168 LS-KQLRDIAEPIQFRPILSSSIVKVLKRICTEERIRCEPEALMKIAERTH-DLRSAIND 225
Query: 576 LQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPD 635
LQ ++ + D+ + +D S F + +F + K + DL S D
Sbjct: 226 LQAAAIGRDEVTLADV----TTGERDVPESIFKVIGLIFRGDDPKKALRAVQDLDESPED 281
Query: 636 LVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
LV +++ A RD+ + R E++S D+F ++ R Q + + +
Sbjct: 282 LV------GWVDENLPRAYRDDD-----LERGFEALSRADLFLGRVMRRQAYGMWR---Y 327
Query: 696 ASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNS 730
AS ++ A + +R +R+GG+ G ++
Sbjct: 328 ASFMMVAGVNRARR----------HRYGGYPGYSA 352
>gi|223477728|ref|YP_002582170.1| replication factor C large subunit [Thermococcus sp. AM4]
gi|214032954|gb|EEB73782.1| Replication factor C large subunit [Thermococcus sp. AM4]
Length = 498
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 166/354 (46%), Gaps = 55/354 (15%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAIL 402
++ W EKYRP+ +EIV ++ ++Q+ W+ W + +KA IL
Sbjct: 2 TVPWVEKYRPRKLSEIVNQEKAIEQVRAWIEAW--------------LHGNPPKKKALIL 47
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL 462
+G PG+GKTT + GF+ IE+NASD R KI + + +
Sbjct: 48 AGPPGVGKTTTVYALANEYGFEVIELNASDERTY--EKIERYVQAAY------------- 92
Query: 463 SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
MD + ++ +DE D + IA LI +K PII N Y + + +
Sbjct: 93 --TMDILGKRRKLIFLDEADNIEPSGAREIAKLIDR---AKNPIIMSAN-HYWEVPREIR 146
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N +++++ +++I K L++I EG V + L E+A R NGD+R AIN LQ +
Sbjct: 147 NRALIVQYKRLTQRDIIKALVRILKREGKTVPKEILYEIARRANGDLRAAINDLQ----T 202
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ +D R+ L + +D + S F A+ ++F + K + + M PD + L I
Sbjct: 203 VVTGGVEDAREVL--AYRDVEKSVFQALAQVFATDNAKKAKLATLGVDMF-PDELLLWID 259
Query: 643 EN--YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
EN Y+ YRP IARA E++S DI+ + +R + L + ++
Sbjct: 260 ENVPYVYYRPED-----------IARAYEALSRADIYLGRAKRTGNYSLWKYAT 302
>gi|288932435|ref|YP_003436495.1| ATPase AAA [Ferroglobus placidus DSM 10642]
gi|288894683|gb|ADC66220.1| AAA ATPase central domain protein [Ferroglobus placidus DSM 10642]
Length = 506
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 120/439 (27%), Positives = 209/439 (47%), Gaps = 64/439 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRPKT ++V ++K + TW +W + G KQ K + +
Sbjct: 1 MLWVEKYRPKTIKDVVAPSDIIKTVVTWAENW----------KRGVKQ------KPLLFA 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA-- 461
G PG+GKT+ A + G++ +E+NASD R + G G N E +S+E
Sbjct: 45 GPPGVGKTSLALALANTYGWEVVELNASDQRNWSVIYRIVGEGAFN-----ETLSDEGDF 99
Query: 462 LSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISK-IPIICICNDRY--SQK 517
LS+ + K ++++DEVD +S D GG + LI +K + P+I I N+ Y S +
Sbjct: 100 LSSREGKLK----LIVLDEVDNISKKEDFGGESALIKILKRNPPQPMILIANEPYNLSPE 155
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
L++LV + FR+ + ++ K L +IA EG+E+++ AL +AD GD+R AIN LQ
Sbjct: 156 LRNLVTMVN---FRRLTRDQVVKVLERIAKLEGIEIDKKALYAIADNAGGDLRAAINDLQ 212
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLV 637
++ V+K +D+ + + + ++ F + K+F + E + L S DL+
Sbjct: 213 AVAEGRKVVKAEDV----IVAKRTQETDVFKVMQKIFKTYYSTV-YSEAMLLDESPEDLI 267
Query: 638 PLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLAS 697
+ + Y G D K +++RA D+F +++R Q ++L + +S
Sbjct: 268 YWIDANVPLEYE----GEDLYKAQLVLSRA-------DMFLGRVKRRQFYRLWKYASYLM 316
Query: 698 CIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDL-----HFHHLASRKS 752
+ + + +++G + R W K T K L ++ + H++ RK+
Sbjct: 317 TV----GVQQSKSKVKKGFTKYTRPTFW-QKLVTFQKKRELRRNILKKLAKYSHMSRRKA 371
Query: 753 KLGRDTLRLDYFSLLLKQL 771
+T DY LL L
Sbjct: 372 ----NTELYDYVRFLLSTL 386
>gi|307596341|ref|YP_003902658.1| AAA ATPase [Vulcanisaeta distributa DSM 14429]
gi|307551542|gb|ADN51607.1| AAA ATPase central domain protein [Vulcanisaeta distributa DSM
14429]
Length = 435
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 166/347 (47%), Gaps = 45/347 (12%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP+ +E+V ++ K L W+ W + GK ++KA +L
Sbjct: 5 IPWVEKYRPRRLSEVVNQEEAKKALLDWINDWEK----------GK-----PSKKAVMLV 49
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT A + G++ +E+NASD R +I + +GGS + +L
Sbjct: 50 GPPGTGKTTLAYALANERGYEVLELNASDVR--TGERIRQVMGGS--------MKMGSLF 99
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
R +++ DEVDG++ DRGG+A ++ I+ S PII N+ + K + L
Sbjct: 100 GFKGR------IILFDEVDGLNVREDRGGLAAIVELIRESTWPIIMTANNPWDPKFRELR 153
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
+ ++ + + +I L +I NAEG++ E AL+ +A+ GD+R AIN LQ +
Sbjct: 154 DEAEVIQLKPLDEDDILTILRRICNAEGIKCEEDALKLIAESSGGDVRAAINDLQAAAEG 213
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
V+ DD+ + + F +DK+F R +E ++ +P
Sbjct: 214 KKVLTKDDVT----VTERAHQFDMFKILDKVFHAR----RFEEARSVT-----FLPSFDW 260
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
E+Y + + K + ++ A +++S D+ +I + Q+W+L
Sbjct: 261 ESYYPWALDNIPSVYAKSVEAVSEALDNLSLSDVVRGRIMKTQEWEL 307
>gi|222480222|ref|YP_002566459.1| replication factor C large subunit [Halorubrum lacusprofundi ATCC
49239]
gi|254797629|sp|B9LPV1.1|RFCL_HALLT RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|222453124|gb|ACM57389.1| AAA ATPase central domain protein [Halorubrum lacusprofundi ATCC
49239]
Length = 500
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 163/351 (46%), Gaps = 41/351 (11%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + W W++ +A +L GS
Sbjct: 4 WTEKYRPSTLSEVRGNDKARDAFADWARSWDDH------------------HEAVVLHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G++ +E+NASD R AD I + G + N+ + +A
Sbjct: 46 PGVGKTSAAHALANDMGWETVELNASDQR-TADV-IERFAGRAARNATLGGSAAGGGAAG 103
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
D + + ++I+DE D + DRGG + + +K S PI+ I ND Y + L N
Sbjct: 104 GDTAS--RQLVILDEADNIHGNYDRGGASAITELVKESGQPIVLIANDYYDMA-RGLRNA 160
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
++ FR + I L I EG+E ALE +A+R GD+R AIN LQ +
Sbjct: 161 TQEIEFRDVSARSIVPVLRDICRKEGIEFESDALERIAERNRGDLRGAINDLQAATEGRD 220
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I +D+ ++ +D+ + F +D + + + + + PD + I+ N
Sbjct: 221 SIAVEDV----VTGDRDKALGLFPYLDAVLKEESAEEALQSAYAVDET-PDDLTKWIENN 275
Query: 645 YIN-YRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
++ Y PS + RA + +++ D++ ++R Q + + ++
Sbjct: 276 VLDVYDPSE-----------VVRAYDFLANADVWLGRVRATQNYSYWRYAT 315
>gi|45357885|ref|NP_987442.1| replication factor C large subunit [Methanococcus maripaludis S2]
gi|50400880|sp|Q6M0E9.1|RFCL_METMP RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|45047445|emb|CAF29878.1| replication factor C, large subunit [Methanococcus maripaludis S2]
Length = 486
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 173/383 (45%), Gaps = 63/383 (16%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRPK+ N++ G+ + + L W+ E + G+ Q K +L+G
Sbjct: 4 WVEKYRPKSLNDVAGHNKTKQALIEWI----ESII------GGQNQ------KPILLAGP 47
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG GKTT A + F IE+NASD R N + I ++V A S +
Sbjct: 48 PGSGKTTLAYAIANDYAFDVIELNASDKR--------------NKDVISQVVGTAATSKS 93
Query: 466 MDRSKHPKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + T++++DEVDG+S D RGG+A++I +K ++ P+I ND Y L +L N
Sbjct: 94 LTGRR---TLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENPVILTANDVYKPALMTLRNS 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
+ + I L +IA EG E++E ++ +A GD+R AIN LQ ++ S
Sbjct: 151 VNLINVGSVHTNSIPPVLRRIALKEGFEIDEKIIKMIASHSGGDLRAAINDLQSLATGGS 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I+ +D ++ +D + S F A+ + + D+ D + I EN
Sbjct: 211 -IEIEDAKEL---PDRDSEKSIFDAMRIIMKTTHYDIATSATRDVK-EDIGTIEEWISEN 265
Query: 645 ----YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCII 700
Y+ Y+ + G D +S D+F ++ R Q + L + +S
Sbjct: 266 LPKEYLKYKDLAEGYD-------------YLSKSDVFLGRVYRRQYFGLWRYAS------ 306
Query: 701 PAALMHGQRETLEQGERNFNRFG 723
A + G E+ R F R+G
Sbjct: 307 -ALMTAGTALAKEEKYRGFTRYG 328
>gi|257054072|ref|YP_003131905.1| replication factor C large subunit [Halorhabdus utahensis DSM
12940]
gi|256692835|gb|ACV13172.1| AAA ATPase central domain protein [Halorhabdus utahensis DSM 12940]
Length = 507
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/365 (25%), Positives = 163/365 (44%), Gaps = 49/365 (13%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE +RP T E+ GN + L W W + +A +L GS
Sbjct: 4 WTEIHRPSTLAEVRGNDKARDALREWAESWPDH------------------REAVVLYGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + + + IE+NASDSR K + I+++ A S
Sbjct: 46 PGIGKTSAAHALANDMDWPTIELNASDSRTK--------------DVIEQVAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++I+DE D + DRGG + + +K ++ PI+ I N+ Y K L N
Sbjct: 92 LAQGGSGRRLVILDEADNLHGNVDRGGTRAITSLVKEAQQPIVLIANEFYEMS-KGLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C D+ FR + I L I E + + AL ++A+ +GD+R AIN LQ ++
Sbjct: 151 CRDIEFRDVSTRSIVPVLRDICRQEDVGFEKEALRKIAEMNDGDLRGAINDLQAIAEGRD 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
+ DD+ ++S +D F+ +D + + ++ D+ + DL+ +
Sbjct: 211 TVTEDDV----VTSERDRTTDIFSFLDTVLKEADAQEALEASYDVDETPDDLISWIEDNV 266
Query: 645 YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAAL 704
+Y + +ARA S+++ D + ++R Q + + +S A AA
Sbjct: 267 PKDYEGAE-----------LARAYRSLANADRWLGRVRATQNYTFWRYASDAMTAGVAAA 315
Query: 705 MHGQR 709
G++
Sbjct: 316 RSGEK 320
>gi|212224564|ref|YP_002307800.1| replication factor C large subunit [Thermococcus onnurineus NA1]
gi|212009521|gb|ACJ16903.1| replication factor C, large subunit [Thermococcus onnurineus NA1]
Length = 500
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 163/344 (47%), Gaps = 67/344 (19%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
S + W EKYRP+ +EIV + ++Q+ W+ W + +KA +
Sbjct: 6 SDVPWVEKYRPRRLSEIVNQNKALEQVRAWIEAW--------------LHGNPPKKKALL 51
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
L+GSPG GKTT + + GF+ IE+NASD R KI + + +
Sbjct: 52 LAGSPGTGKTTTIYALAREYGFEVIELNASDERTYE--KIERYVQAAY------------ 97
Query: 462 LSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
MD + ++ +DE D + IA LI ++ PII N Y + + +
Sbjct: 98 ---TMDILGKRRKLIFLDESDNIEPSGAREIAKLIDK---ARNPIIMSAN-HYWEVPREI 150
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
N + +++ +++I K L++I AEG+ V + L+E+A R NGD+R AIN LQ
Sbjct: 151 RNKAQIVEYKRLSQRDIMKALIRILKAEGVTVPKEILQEIAKRANGDLRAAINDLQ---- 206
Query: 582 SLSVIK--YDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVP- 638
+V+ +D R+ L + +D + S F A+ +LF + K R L++ D+ P
Sbjct: 207 --TVVSGGIEDAREVL--AYRDVEKSVFQALAQLFATDNAK-----RAKLAVLGVDMFPN 257
Query: 639 -LL--IQEN--YINYRPSSAGRDEVKRLSLIARAAESISDGDIF 677
LL I EN Y+ Y+P IARA E++S DI+
Sbjct: 258 ELLQWIDENLPYVYYKPED-----------IARAYEALSRADIY 290
>gi|159905016|ref|YP_001548678.1| replication factor C large subunit [Methanococcus maripaludis C6]
gi|226739139|sp|A9A6N2.1|RFCL_METM6 RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|159886509|gb|ABX01446.1| AAA ATPase central domain protein [Methanococcus maripaludis C6]
Length = 484
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 123/236 (52%), Gaps = 34/236 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRPK+ N++ G+ + + L W+ E F+ +G+KQ K +L+G
Sbjct: 4 WVEKYRPKSLNDVAGHNKTKETLIEWI----ESFV------SGQKQ------KPILLAGP 47
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG GKTT A + + + IE+NASD R N + I ++V A S +
Sbjct: 48 PGSGKTTLAYAIAKDYAYDVIELNASDKR--------------NKDVISQVVGTAATSKS 93
Query: 466 MDRSKHPKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + T++++DEVDG+S D RGG+A++I +K ++ P+I ND Y L +L N
Sbjct: 94 ITGRR---TLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENPVILTANDVYKPALMTLRNN 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ + I L +IA EG E++E ++ +A GD+R AIN LQ ++
Sbjct: 151 VNLINVGSVHTNSIPPVLRKIALKEGFEIDEKVIKTIASHAGGDLRAAINDLQSLA 206
>gi|354610609|ref|ZP_09028565.1| Replication factor C large subunit [Halobacterium sp. DL1]
gi|353195429|gb|EHB60931.1| Replication factor C large subunit [Halobacterium sp. DL1]
Length = 495
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 162/350 (46%), Gaps = 49/350 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP + +E+ GN + L W W A +AAIL GS
Sbjct: 4 WTEKYRPSSLSEVRGNNKARDALREWADTW------------------ADHGEAAILHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + G+ +E+NASD R A+ ++ + A S
Sbjct: 46 PGIGKTSAAHALAADEGWDVVELNASDQR--------------TADVVERVAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + +++MDE D + DRGG A + +K + PI+ I N+ Y + N
Sbjct: 92 LTGGSGGRKLVVMDEADNLHGNVDRGGSAAITRLVKEATQPIVLIANEYYDMS-NGVRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C D+ FR K+ I L I E + ++ ALE +A++ +GD+R A+N LQ ++ +
Sbjct: 151 CRDIEFRDVSKRSIVPVLRDICRREDVAYDDEALEAIAEQNSGDLRSAVNDLQALAETSR 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
+ DD+ + +D F +D L +G + ++ D+ + DL+ +++N
Sbjct: 211 KLTVDDV----VMGERDRSEGVFDFLDALIKTHGAQDALEAAYDVDETPDDLIN-WVEDN 265
Query: 645 YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
P +E +A A E +S+ D++ ++R Q++ + ++
Sbjct: 266 V----PKDYYGEE------LAVAYEFLSNADVWLGRVRATQEYSYWRYAT 305
>gi|389847870|ref|YP_006350109.1| replication factor C large subunit [Haloferax mediterranei ATCC
33500]
gi|448617850|ref|ZP_21666310.1| replication factor C large subunit [Haloferax mediterranei ATCC
33500]
gi|388245176|gb|AFK20122.1| replication factor C large subunit [Haloferax mediterranei ATCC
33500]
gi|445748218|gb|ELZ99668.1| replication factor C large subunit [Haloferax mediterranei ATCC
33500]
Length = 485
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 159/354 (44%), Gaps = 64/354 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP + +E+ GN + L W W++ +A ++
Sbjct: 2 VDWTEKYRPSSLSEVRGNNKARDALAEWAKSWDDH------------------REAVVVY 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSR---------GKADAKISKGIGGSNANSIK 454
GSPG+GKT+AA + +G++ +E+NASD R G+A AK + G S S +
Sbjct: 44 GSPGIGKTSAAHALASDMGWETVELNASDQRTGDVIERFAGRA-AKNATLSGSSTGTSTR 102
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDR 513
+LV I+DE D + DRGG + + +K S PI+ I N+
Sbjct: 103 QLV-------------------ILDEADNIHGNYDRGGSSAVTKLVKSSSQPIVLIANEF 143
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
Y + L N C ++ FR + I L I EGLE AL+ +AD +GD+R A+
Sbjct: 144 YDMS-RGLRNACQEIEFRDVSARSIVPVLRDICRKEGLEFESDALQAIADMNSGDLRSAV 202
Query: 574 NQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSD 633
N LQ ++ I +D+ + +D + F +D + + + D+ +
Sbjct: 203 NDLQAIAEGRDKITEEDV----IMGDRDRSVGLFEFLDAVLKEESAQEALYTAYDVDETP 258
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
DL + + + Y P DE +ARA E +++ D + ++R +Q +
Sbjct: 259 DDLTKWVEDKVSLVYEP-----DE------LARAYEFLANADRWLGRVRASQNY 301
>gi|57642154|ref|YP_184632.1| replication factor C large subunit [Thermococcus kodakarensis KOD1]
gi|62287361|sp|Q5JHP1.1|RFCL_PYRKO RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|57160478|dbj|BAD86408.1| replication factor C, large subunit [Thermococcus kodakarensis
KOD1]
Length = 499
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 168/364 (46%), Gaps = 73/364 (20%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
+ + W EKYRP+ +EIV ++ ++Q+ W+ W + +KA +
Sbjct: 2 TEVPWVEKYRPRKLSEIVNQEKALEQVRAWVEAW--------------LHGNPPKKKALL 47
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
L+G PG+GKTT + GF+ IE+NASD R KI + + +
Sbjct: 48 LAGPPGVGKTTTVYALANEYGFEVIELNASDERTYE--KIERYVQAAY------------ 93
Query: 462 LSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
MD + ++ +DE D + IA LI ++ PII N Y + + +
Sbjct: 94 ---TMDILGKRRKLIFLDEADNIEPSGAREIAKLIDK---ARNPIIMSAN-HYWEVPREI 146
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
N + +++ +++I K L++I EGLEV + L E+A R NGD+R A+N LQ +
Sbjct: 147 RNKAQIVEYKRLTQRDIIKALVRILKREGLEVPKEVLYEIAKRANGDLRAAVNDLQTVVT 206
Query: 582 -----SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDL 636
++ V+ Y +D + S F A+ +LF + K R L++ D+
Sbjct: 207 GGVEDAVEVLAY-----------RDTEKSVFQALAQLFATDNAK-----RAKLAVLGVDM 250
Query: 637 VP--LL--IQEN--YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLS 690
+P LL I EN Y+ YRP IARA E++S DI+ + +R + L
Sbjct: 251 MPNELLQWIDENVPYVYYRPED-----------IARAYEALSRADIYLGRAQRTGNYGLW 299
Query: 691 QSSS 694
+ ++
Sbjct: 300 KYAT 303
>gi|358060672|dbj|GAA93611.1| hypothetical protein E5Q_00255 [Mixia osmundae IAM 14324]
Length = 838
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 145/325 (44%), Gaps = 49/325 (15%)
Query: 326 KTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTK 385
+ ++ P + I+ S L WT+ YRPK +++G+++ + TWL W+ TG K
Sbjct: 185 RIISGPLETDQDRIRNSRL-WTDVYRPKRFTDLMGDERTHRNAMTWLKEWDNCVFKTGNK 243
Query: 386 RNGKKQNDAS------------------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
+ K+ + AS EK +LSG PG+GKTT A ++ G++ E
Sbjct: 244 KP-KRGDTASRGPGHDKENAPIDPYGRPQEKILLLSGPPGLGKTTLAHVLATQAGYRVHE 302
Query: 428 VNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS-A 486
+NASD R G + I++ + A+S S T +I+DE+DG +
Sbjct: 303 INASDDR----------TGRIVTDRIRDAIECRAISVQGGLSSDRPTCVIIDEIDGAGGS 352
Query: 487 GDRGGIADLIASIKISKI-----------------PIICICNDRYSQKLKSLVNYCSDLR 529
G+ + L+ ++ + PIICICND Y+ L+ L + +R
Sbjct: 353 GENAFVKQLVKFVQDGSMVKHNKGKGKKTGRPLLRPIICICNDLYANVLRPLRPFARIIR 412
Query: 530 FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD 589
F + +RL + + EGL + L +L + GD+R +N LQ++ + +
Sbjct: 413 FGVATAPTLLRRLRTVCDQEGLVADAKHLTKLVEVAGGDMRNCLNTLQFIKSKGTRLDEQ 472
Query: 590 DIRQRLLSSAKDEDISPFTAVDKLF 614
IR + KD SP D LF
Sbjct: 473 AIRSSSI-GLKDTGTSPGAVWDHLF 496
>gi|397780048|ref|YP_006544521.1| Replication factor C large subunit [Methanoculleus bourgensis MS2]
gi|396938550|emb|CCJ35805.1| Replication factor C large subunit Short=RFC large subunit
[Methanoculleus bourgensis MS2]
Length = 449
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 169/364 (46%), Gaps = 64/364 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP+ ++VGN V+Q++ W W+ + +K IL
Sbjct: 1 MDWAEKYRPQRLQDVVGNAAAVRQIYEWARDWSRE------------------KKPLILY 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKT+ A + + ++ +E+NASD R K +++ + + + +
Sbjct: 43 GKPGIGKTSCAHALANDMNWEVVELNASDQRTK--------------QALERVAGSSSTT 88
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
++ + H ++++DE D + DRGG ++ I S+ PII I ND Y+ K L
Sbjct: 89 GSLSGASH--KLILLDEADNLHGQADRGGARAIVEIIAASQQPIILIANDYYALS-KDLK 145
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
++FR + + I RL I AEG+ + AL+E+A R GD+R A+N L ++
Sbjct: 146 AATEPVQFRALQARSIVPRLRHICAAEGVTCDPAALDEIAGRAGGDMRAAVNMLYAAAIG 205
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKL--RMDE----RIDLSMSD-PD 635
++ DD++ +S KD+ + F V GG L R D+ R+ + + D PD
Sbjct: 206 KERLEVDDVQ----TSTKDQRSTIFELV-------GGVLAGRRDDANLLRMAMEVEDTPD 254
Query: 636 LVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
+ ++ N + + P A R AR +S D + + R Q + L + +S
Sbjct: 255 TIEQWLEGN-LGHMPDFASR---------ARGYACLSRADEYIGRTYRRQYYTLWRYASA 304
Query: 696 ASCI 699
I
Sbjct: 305 IMLI 308
>gi|150400075|ref|YP_001323842.1| replication factor C large subunit [Methanococcus vannielii SB]
gi|166977386|sp|A6URV8.1|RFCL_METVS RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|150012778|gb|ABR55230.1| AAA ATPase central domain protein [Methanococcus vannielii SB]
Length = 492
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 171/382 (44%), Gaps = 63/382 (16%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRPK+ N++ G+ + + L +W E F+ G KQ K +L G
Sbjct: 4 WVEKYRPKSLNDVAGHSKTKEAL----CYWIESFI------RGNKQ------KPVLLFGP 47
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG GKTT A + F IE+NASD R N + I ++V A S +
Sbjct: 48 PGSGKTTMAHAIANDYNFDVIELNASDKR--------------NKDVISQVVGTAATSKS 93
Query: 466 MDRSKHPKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ +T++++DEVDG+S D RGG++++I +K ++ P+I ND Y L SL N
Sbjct: 94 L---TGKRTLIVLDEVDGLSGNDDRGGVSEIIKVLKNAENPVILTANDVYKPALSSLRNS 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
+ + I L +IA EG E++E ++ ++ GD+R AIN LQ + L+
Sbjct: 151 VTMVDAGSVHTNSIPPVLRKIALKEGFEIDEKVIKLISSHAGGDLRAAINDLQAL-LTGG 209
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I+ +D + +D + S F A+ + + +DL + V I EN
Sbjct: 210 SIEIEDAKNL---PDRDSEKSIFDAIRIIMKTTHYDIATSATVDLK-EELGTVSEWISEN 265
Query: 645 ----YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCII 700
Y+ Y + G D +S D+F ++ R Q + L + +S
Sbjct: 266 LPKEYLKYGDLAKGYD-------------YLSKSDVFLGRVYRRQYFGLWRYAS------ 306
Query: 701 PAALMHGQRETLEQGERNFNRF 722
A + G + E R F R+
Sbjct: 307 -ALMTAGTALSKEDKYRGFTRY 327
>gi|340623509|ref|YP_004741962.1| replication factor C large subunit [Methanococcus maripaludis X1]
gi|339903777|gb|AEK19219.1| replication factor C large subunit [Methanococcus maripaludis X1]
Length = 486
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 173/383 (45%), Gaps = 63/383 (16%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRPK+ N++ G+ + + L W+ E + G+ Q K +L+G
Sbjct: 4 WVEKYRPKSLNDVAGHNKTKQALIEWI----ESII------GGQNQ------KPILLAGP 47
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG GKTT A + F IE+NASD R N + I ++V A S +
Sbjct: 48 PGSGKTTLAYAIANDYAFDVIELNASDKR--------------NKDVISQVVGTAATSKS 93
Query: 466 MDRSKHPKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + T++++DEVDG+S D RGG+A++I +K ++ P+I ND Y L +L N
Sbjct: 94 LTGRR---TLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENPVILTANDVYKPALMTLRNS 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
+ + I L +IA EG E++E ++ +A GD+R AIN LQ ++ S
Sbjct: 151 VNLINVGSVHTNSIPPVLRRIALKEGFEIDEKIIKMIASHSGGDLRAAINDLQSLATGGS 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I+ +D ++ +D + S F A+ + + D+ D + I EN
Sbjct: 211 -IEIEDAKEL---PDRDSEKSIFDAMRIIMKTTHYDIATSATRDVK-EDIGTIEEWISEN 265
Query: 645 ----YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCII 700
Y+ Y+ + G D +S D+F ++ R Q + L + +S
Sbjct: 266 LPKEYLKYKDLAEGYD-------------YLSKSDVFLGRVYRRQYFGLWRYAS------ 306
Query: 701 PAALMHGQRETLEQGERNFNRFG 723
A + G E+ R F R+G
Sbjct: 307 -ALMTAGTALAKEEKYRGFTRYG 328
>gi|240104120|ref|YP_002960429.1| replication factor C large subunit [Thermococcus gammatolerans EJ3]
gi|239911674|gb|ACS34565.1| Replication factor C, large subunit (rfcL) [Thermococcus
gammatolerans EJ3]
Length = 507
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 166/358 (46%), Gaps = 55/358 (15%)
Query: 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK 398
I + + W EKYRP+ +EIV ++ ++Q+ W+ W + +K
Sbjct: 2 IAMTEVPWVEKYRPRKLSEIVNQEKAIEQVRAWVEAW--------------LHGNPPKKK 47
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
A IL+G PG+GKTT + GF+ IE+NASD R KI + + +
Sbjct: 48 ALILAGPPGVGKTTTVYALANEYGFEVIELNASDERTY--EKIERYVQAAY--------- 96
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
MD + ++ +DE D + IA LI ++ PII N Y +
Sbjct: 97 ------TMDILGKRRKLIFLDEADNIEPSGAREIAKLIDR---ARNPIIMSAN-HYWEVP 146
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
K + N + +++ +++I K L++I EG V + L E+A R NGD+R AIN LQ
Sbjct: 147 KEIRNRAQIVEYKRLTQRDIIKALVRILKREGKTVPKEILYEIAKRANGDLRAAINDLQ- 205
Query: 579 MSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVP 638
++ +D ++ L + +D + S F A+ ++F + K + + M PD +
Sbjct: 206 ---TVVTGGVEDAKEVL--AYRDVEKSVFQALAQVFATDNAKRAKIAVLGVDMF-PDELL 259
Query: 639 LLIQEN--YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
L I EN Y+ Y+P IARA E++S DI+ + +R + L + ++
Sbjct: 260 LWIDENVPYVYYKPED-----------IARAYEALSRADIYLGRAKRTGNYSLWKYAT 306
>gi|448705304|ref|ZP_21700804.1| replication factor C large subunit [Halobiforma nitratireducens JCM
10879]
gi|445795705|gb|EMA46228.1| replication factor C large subunit [Halobiforma nitratireducens JCM
10879]
Length = 517
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 49/345 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + QL W W++ A I+ GS
Sbjct: 4 WTEKYRPTTLSEVRGNNKARDQLKEWAETWDDH------------------RDAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASD+R A+ I+ + + +
Sbjct: 46 PGVGKTSAAHALANDMGWPMMELNASDNR--------------QADVIERIAGEASKTGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + ++I+DE D D GG ++ +K + P++ + N+ Y +SL N
Sbjct: 92 LTAGGSGRRLVILDEADNFHGNADYGGSREVTRVVKNATQPVVLVANEFYDMS-QSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I EG+E + ALE++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRKEGVEFEDDALEKIAEDTSGDLRSAVNDLQAVAEEAE 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
+ +D+ ++ +D F +D L + + D+ +PD + I++N
Sbjct: 211 RLTVEDV----VTGQRDTTEGIFDFLDTLIKEEDAQGALQASYDVD-ENPDEMLNWIEDN 265
Query: 645 YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
P DE +A A E +S+ D + ++R Q +
Sbjct: 266 V----PKDYEGDE------LADAYEFLSNADRWLGRVRSTQNYSF 300
>gi|322368972|ref|ZP_08043539.1| replication factor C large subunit [Haladaptatus paucihalophilus
DX253]
gi|320551703|gb|EFW93350.1| replication factor C large subunit [Haladaptatus paucihalophilus
DX253]
Length = 488
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 123/270 (45%), Gaps = 38/270 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + +L W W D G A IL GS
Sbjct: 4 WTEKYRPTTLSEVRGNNKARDKLKQWADTWE----DHG--------------DAVILHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ IE+NASD R + +K + A S
Sbjct: 46 PGVGKTSAAHALANDMGWPTIELNASDQR--------------TGDVVKRVAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + V+IMDE D ++ DRGG + +K + P+I I N+ Y SL N
Sbjct: 92 LTGGTAGRRVVIMDEADNLTHNADRGGSRAITDVVKSANQPLILIANEFYDMS-NSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR + I L I E +E ALE +A+ +GD+R A+N LQ ++ +
Sbjct: 151 CETIEFRNVSARSIVPALRDICRQENIEYESEALEAIAENDSGDLRSAVNDLQAVATTNG 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ DD+ ++ +D F +D L
Sbjct: 211 KLTRDDV----VTGERDTTSGIFDFLDDLI 236
>gi|448317665|ref|ZP_21507213.1| replication factor C large subunit [Natronococcus jeotgali DSM
18795]
gi|445602591|gb|ELY56565.1| replication factor C large subunit [Natronococcus jeotgali DSM
18795]
Length = 486
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 119/247 (48%), Gaps = 34/247 (13%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE YRP T +E+ GN + QL W W++ KA I+ GS
Sbjct: 4 WTETYRPTTLSEVRGNNKARDQLREWAETWDDH------------------RKAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + + + +E+NASDSRG A+ I+ + + S
Sbjct: 46 PGVGKTSAAHALANDMDWPVMELNASDSRG--------------ADVIERVAGEASKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + ++I+DE D D GG ++ +K + PI+ + N+ Y +SL +
Sbjct: 92 LTAGGSGRRLVILDEADNFHGNADYGGSREVTRVVKSANQPIVLVANEFYDMS-QSLRDA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I EG+E E ALE++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREGVEFEEEALEKIAEDTSGDLRSAVNDLQAVAEEAE 210
Query: 585 VIKYDDI 591
+ +D+
Sbjct: 211 RLTVEDV 217
>gi|110668631|ref|YP_658442.1| replication factor C large subunit [Haloquadratum walsbyi DSM
16790]
gi|121687203|sp|Q18GQ9.1|RFCL_HALWD RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|109626378|emb|CAJ52837.1| replication factor C large subunit [Haloquadratum walsbyi DSM
16790]
Length = 516
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 170/383 (44%), Gaps = 57/383 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE+YRP T + + GN + W W++ ++ +L G+
Sbjct: 4 WTERYRPTTLSAVRGNNAARDEFIEWAESWDDH------------------HESVVLHGA 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G++ +E+NASD R + + + + G A N L+
Sbjct: 46 PGVGKTSAAHALASDMGWETVELNASDQRT---SDVIERLAGRAAK-------NATLAGA 95
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++IMDE D + DRGG + +K + PI+ I N+ Y + L N
Sbjct: 96 VSGTTSTRQLIIMDEADNIHYQYDRGGKQAVTTLLKDANQPIVLIANEYYDMS-RGLRNA 154
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
D+ FR + I L I E +E E AL+++A+ +GD+R AI LQ
Sbjct: 155 AQDIEFRDISARSIVPVLRNILRKENIEFEEAALKQIAEVNSGDLRAAIKDLQTTVEGSD 214
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I DD++ + +D + F+ +D + + + + D+ + DL+ + +
Sbjct: 215 RITVDDVK----TGGRDRAMGLFSFLDSVLKEDAAEEALQNSYDVDETPDDLLKWVEDKV 270
Query: 645 YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIR---RNQQWQLSQSSSLASCIIP 701
+ Y + +ARA E +S+ DI+ ++ N +W + +LA +
Sbjct: 271 PLVYDDAE-----------LARAYEFLSNADIWTNRVYATDYNYRWWRYATDNLAGGVAA 319
Query: 702 AALMHGQRETLEQGERNFNRFGG 724
A RET G + R+GG
Sbjct: 320 A------RETQRGG---WTRYGG 333
>gi|41615216|ref|NP_963714.1| replication factor C large subunit [Nanoarchaeum equitans Kin4-M]
gi|42559421|sp|P60373.1|RFCL_NANEQ RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|40068940|gb|AAR39275.1| NEQ430 [Nanoarchaeum equitans Kin4-M]
Length = 430
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 163/354 (46%), Gaps = 72/354 (20%)
Query: 349 KYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGM 408
KYRPKT +E+ +Q + L ++ ++ +K+ KA +L G PG
Sbjct: 36 KYRPKTLDEVENQEQAKQILRDYVINYKKKY----------------KGKALLLYGPPGT 79
Query: 409 GKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDR 468
GKT++ + LG++ +EVNASD R +A I +V + +
Sbjct: 80 GKTSSVYALANELGYEVLEVNASDER--------------DAIHIHHIVGEASKGKPLF- 124
Query: 469 SKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSD 527
H ++++DEVDG+S DRGG+ L+ IK S PIIC ND + QKLK L
Sbjct: 125 --HKGRIILVDEVDGLSGKEDRGGVGALVNIIKQSSWPIICTANDPWDQKLKKLREISIM 182
Query: 528 LRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIK 587
+ F++ + + L +I E +++++ L ++A + GD+R AIN L+ ++IK
Sbjct: 183 VEFKRLSPKHVYNVLKKIVTNEKIKISDKILWDIAYKSGGDLRAAINDLE------TIIK 236
Query: 588 YDDIRQRLLSSA--KDEDISPFTAVDKLF----------GFNGGKLRMDERIDLSMSDPD 635
I + + + ++++I F A+ +F FN L DE
Sbjct: 237 SGIIDENFVKALGNREQEIDIFKALGIMFKTENLATAVSAFNNVDLEFDE---------- 286
Query: 636 LVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+ P L +EN P E KRL I RA + DIF +I + Q W+L
Sbjct: 287 IFPWL-EENI----PV-----EYKRLDDIYRAYYWLGKADIFRKRIIKTQHWRL 330
>gi|333987925|ref|YP_004520532.1| replication factor C large subunit [Methanobacterium sp. SWAN-1]
gi|333826069|gb|AEG18731.1| Replication factor C large subunit [Methanobacterium sp. SWAN-1]
Length = 508
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 106/367 (28%), Positives = 165/367 (44%), Gaps = 58/367 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKY PK E++GN ++ K++ W W + + +K +L
Sbjct: 1 MLWTEKYGPKNFEEVLGNIKVKKEIMEWTEEWLK----------------GNPQKCLLLV 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT A L + + +E+NASD R + + IK + ALS
Sbjct: 45 GPPGTGKTTMAHLAAKEFS-EFVELNASDKR--------------SYDIIKNTIGESALS 89
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
++ ++I+DEVDG+ DRGG + IK K P+I + ND YS++L SL
Sbjct: 90 RSL--FGEGLKLIILDEVDGIHGTEDRGGTRAIGNIIKDGKHPLIMMANDPYSKRLTSLK 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
C+ ++ RK I L +I E +E E L LA + GD+R AIN L+ ++
Sbjct: 148 TKCNVIKLRKVHTNSIVALLKKICVKEKIEFEEHVLRTLAKQSKGDLRSAINDLEAIAAG 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSM---SDPDLVPL 639
+ +D+ L KDE ++ F +V + K R I +M + P+ +
Sbjct: 208 KKKVTSEDLE---LIGKKDEIVNIFDSVRTVL-----KSRNIHHIKDAMKVEAQPNFILE 259
Query: 640 LIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIF---NVQIRRNQQWQLS-QSSSL 695
L+ EN P E ++ I++A E +S D + Q R W+ S Q SL
Sbjct: 260 LVAENI----PR-----EYEKAEEISKAYEMVSLADTYLGRAFQTRAYTYWKYSYQFMSL 310
Query: 696 ASCIIPA 702
+ A
Sbjct: 311 GVALAKA 317
>gi|409721541|ref|ZP_11269713.1| replication factor C large subunit [Halococcus hamelinensis 100A6]
gi|448722652|ref|ZP_21705185.1| replication factor C large subunit [Halococcus hamelinensis 100A6]
gi|445789077|gb|EMA39770.1| replication factor C large subunit [Halococcus hamelinensis 100A6]
Length = 482
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 141/305 (46%), Gaps = 45/305 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTE YRP T +E+ GN + L W W + +A IL
Sbjct: 1 MDWTETYRPSTLSEVRGNNKARDALREWAETWEDH------------------REAVILH 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL- 462
G+PG+GKT+AA + + + IE+NAS+ R KA I E V+ EA
Sbjct: 43 GAPGVGKTSAAHALANDMSWPTIELNASNQRTKA---------------IIERVAGEAAK 87
Query: 463 SANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
S + + +++MDE D + DRGG + + +K + P++ I N+ Y +L
Sbjct: 88 SGTLSGGSAGRRLVVMDEADNLHGNVDRGGSRAITSLVKEAGQPMVLIANEFYEMS-NAL 146
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
N C + FR + I L I EG+E + ALE +A+ +GD+R A+N LQ ++
Sbjct: 147 RNACETIEFRDVSARSIRPVLRDICRQEGVEYEDDALEAIAEHNSGDLRGAVNDLQALAE 206
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPL 639
S + DD+ ++S +D F +D L G LRM +D + PD +
Sbjct: 207 STEKLTADDV----VTSDRDRTTGIFDFLDALIKEEDAEGALRMSYDVDET---PDDLIN 259
Query: 640 LIQEN 644
I++N
Sbjct: 260 WIEDN 264
>gi|448604825|ref|ZP_21657870.1| replication factor C large subunit [Haloferax sulfurifontis ATCC
BAA-897]
gi|445743146|gb|ELZ94629.1| replication factor C large subunit [Haloferax sulfurifontis ATCC
BAA-897]
Length = 486
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 158/354 (44%), Gaps = 64/354 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +A ++
Sbjct: 2 VDWTEKYRPSTLSEVRGNNKARDALAEWAETWDDH------------------REAVVVH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSR---------GKADAKISKGIGGSNANSIK 454
GSPG+GKT+AA + +G++ +E+NASD R G+A AK + G S S +
Sbjct: 44 GSPGIGKTSAAHALAADMGWETVELNASDQRTGDVIERFAGRA-AKNATLAGSSTGTSTR 102
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDR 513
+LV I+DE D + DRGG + + +K S PI+ I N+
Sbjct: 103 QLV-------------------ILDEADNIHGNYDRGGASAVTRLVKSSSQPIVLIANEF 143
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
Y + L N C ++ FR + I L I EGLE AL+ +A+ +GD+R A+
Sbjct: 144 YDMS-RGLRNACQEIEFRDVSARSIVPVLRDICRKEGLEFESDALDRIAEMNSGDLRSAV 202
Query: 574 NQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSD 633
N LQ ++ I +D+ + +D + F +D + + + D+ +
Sbjct: 203 NDLQAIAEGREKITEEDV----VMGDRDRSVGLFEFLDAVLKEESAQDALYTAYDVDETP 258
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
DL + + + Y P DE +ARA + +++ D + ++R Q +
Sbjct: 259 DDLTKWVEDKVSLVYEP-----DE------LARAYDFLANADRWLGRVRATQNY 301
>gi|327400517|ref|YP_004341356.1| replication factor C large subunit [Archaeoglobus veneficus SNP6]
gi|327316025|gb|AEA46641.1| Replication factor C large subunit [Archaeoglobus veneficus SNP6]
Length = 502
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 105/387 (27%), Positives = 185/387 (47%), Gaps = 61/387 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRPKT ++V ++++++++ TW +W + + +K + +
Sbjct: 1 MLWVEKYRPKTIKDVVADKKVLEKVVTWAKNWEKGIV----------------QKPLLFA 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA-- 461
G PG GKT+ A + G++ +E+NASD R + +I I G A S E +S+E
Sbjct: 45 GPPGTGKTSLALAIANTFGWEVVELNASDQR---NWRIIYHIVGEGAFS--ETISDEGEF 99
Query: 462 LSANMDRSKHPKTVLIMDEVDGMS----AGDRGGIADLIASIKISKIPIICICNDRYSQK 517
LS R K ++I+DEVD + AG G + L+ K + PII N+ Y+
Sbjct: 100 LSIRQGRLK----LIILDEVDNIHKKEDAGGEGALIRLLK--KKPRQPIILTANEPYNLS 153
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
L N C + FR+ + + L +I EG+ + ALE +A GD+R AIN LQ
Sbjct: 154 -AELRNLCEMITFRRLDVRRVVAVLERICAQEGIRADRRALESIARNAGGDLRAAINDLQ 212
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLV 637
++ + I+ +D+ +++ + ++ F + K+F + E + L S D +
Sbjct: 213 AIAEGKTEIRVEDV----VTAKRTQETDVFKVMQKIFKTTSSAV-YSEAMLLDESPDDFI 267
Query: 638 PLLIQENYI--NYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
N+I N +G D +K +++RA DIF ++RR Q ++L +
Sbjct: 268 ------NWIDENLPLEYSGEDLLKGYLVLSRA-------DIFLGRVRRRQFYRLWK---Y 311
Query: 696 ASCIIPAALMHGQRETLEQGERNFNRF 722
A+ ++ A + ++E R F R+
Sbjct: 312 ATYLMTAGVQQVKKE----ARRGFTRY 334
>gi|73669571|ref|YP_305586.1| replication factor C large subunit [Methanosarcina barkeri str.
Fusaro]
gi|110287808|sp|Q46AT6.1|RFCL_METBF RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|72396733|gb|AAZ71006.1| replication factor C large subunit [Methanosarcina barkeri str.
Fusaro]
Length = 642
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 168/354 (47%), Gaps = 44/354 (12%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAIL 402
++ W EKYRP+T EIVGN++ V+ L TW W D +A +L
Sbjct: 4 AIEWAEKYRPQTLKEIVGNKKAVQYLRTWAEKWLSGIPD---------------RRAVVL 48
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL 462
G G+GKT+ A + + L ++ IE+NASD R A + + + GS
Sbjct: 49 HGPAGVGKTSTAHALARDLDWEVIELNASDQR---TAGVIERVAGS-------------- 91
Query: 463 SANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
+A+M+ K ++I+DE D + DRGG+ + IK + PI+ I ND Y ++
Sbjct: 92 AASMNTFFGGKRLIILDEADNIHGTADRGGMRAIAGIIKNTLQPIVLIANDIYGLT-PTI 150
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
N C +++F + + + L ++ +E + + A++++A+ GD+R AIN LQ +
Sbjct: 151 RNLCLEIKFGSVQSRSMVPALKKVCESEDILCSPDAIQQIAEGAGGDLRSAINDLQAAAT 210
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLI 641
++ +D L +S +D + F A+ ++F K ++ L S DLV +
Sbjct: 211 GRKTLEVED----LSTSGRDVKENIFKAMQRIFKSTDCKKALEAARGLDESPEDLVHWID 266
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
+ Y +++K +S D++ ++++ Q +++ + +S+
Sbjct: 267 ENLPFQYASKDGNLEDIK------TGFGYLSKADLYLGRVKKRQNYRMWRYASM 314
>gi|448728046|ref|ZP_21710386.1| replication factor C large subunit [Halococcus morrhuae DSM 1307]
gi|445788712|gb|EMA39418.1| replication factor C large subunit [Halococcus morrhuae DSM 1307]
Length = 490
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 141/305 (46%), Gaps = 45/305 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + W W E +A +L
Sbjct: 1 MDWTEKYRPSTLSEVRGNNKARDAFAEWAETWEEH------------------REAIVLH 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL- 462
G+PG+GKT+AA + + + IE+NAS+ R K S+ E V+ EA
Sbjct: 43 GAPGVGKTSAAHALAADMDWPTIELNASNQRTK---------------SVVERVAGEAAK 87
Query: 463 SANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
S + + ++IMDE D + DRGG + +K + P++ I N+ Y KSL
Sbjct: 88 SGTLTGGSAGRRLVIMDEADNLHGNVDRGGSRAITGLVKEASQPMVLIANEFYDMS-KSL 146
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
N C + FR + I L I E + ++ AL+ +A+R +GD+R A+N LQ ++
Sbjct: 147 RNACETIEFRDVSARSILPVLRDICRREDVAYDDDALDAIAERNSGDLRGAVNDLQALAE 206
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPL 639
S + DD+ ++S +D+ F +D L G LR +D + PD +
Sbjct: 207 SAETLTVDDV----VTSDRDKTTGIFDFLDALIKEEDAEGALRSSYDVDET---PDDLIN 259
Query: 640 LIQEN 644
I++N
Sbjct: 260 WIEDN 264
>gi|448565679|ref|ZP_21636546.1| replication factor C large subunit [Haloferax prahovense DSM 18310]
gi|445715423|gb|ELZ67179.1| replication factor C large subunit [Haloferax prahovense DSM 18310]
Length = 487
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 158/354 (44%), Gaps = 64/354 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +A ++
Sbjct: 2 VDWTEKYRPSTLSEVRGNNKARDALAEWAKTWDDH------------------REAVVVH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSR---------GKADAKISKGIGGSNANSIK 454
GSPG+GKT+AA + +G++ +E+NASD R G+A AK + G S S +
Sbjct: 44 GSPGIGKTSAAHALAADMGWETVELNASDQRTGDVIERFAGRA-AKNATLAGSSAGTSTR 102
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDR 513
+LV I+DE D + DRGG + + +K S PI+ I N+
Sbjct: 103 QLV-------------------ILDEADNIHGNYDRGGASAVTRLVKSSSQPIVLIANEF 143
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
Y + L N C ++ FR + I L I EGLE AL+ +A+ +GD+R A+
Sbjct: 144 YDMS-RGLRNACQEIEFRDVSARSIVPVLRDICRKEGLEFESDALDRIAEMNSGDLRSAV 202
Query: 574 NQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSD 633
N LQ ++ I +D+ + +D + F +D + + + D+ +
Sbjct: 203 NDLQAIAEGREKITEEDV----VMGDRDRSVGLFEFLDAVLKEKSAQEALYTAYDVDETP 258
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
DL + + + Y P DE +ARA + +++ D + ++R Q +
Sbjct: 259 DDLTKWVEDKVSLVYEP-----DE------LARAYDFLANADRWLGRVRATQNY 301
>gi|1335208|emb|CAA49475.1| LLDBP [Homo sapiens]
Length = 521
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 121/239 (50%), Gaps = 43/239 (17%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 270 AYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGN 329
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT + EDGL ++IR K+ + + ++K
Sbjct: 330 VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGKKSKYEIAVETEMKK- 388
Query: 299 AASLPKKSPQNIEAKSTSAPKA---------PIERMKTVASPAKR--------------- 334
+ L + +N++ K +P P + ++A K+
Sbjct: 389 ESKLERTPQKNVQGKRKISPSKKESESKKSRPTSKRDSLAKTIKKETDVFWKSLDFKEQV 448
Query: 335 --------KGQNIQQSS-------LTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHW 375
K +N+ S L W +KY+P + I+ G+Q +L WL +W
Sbjct: 449 AEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNW 507
>gi|385804106|ref|YP_005840506.1| replication factor C large subunit [Haloquadratum walsbyi C23]
gi|339729598|emb|CCC40868.1| replication factor C large subunit [Haloquadratum walsbyi C23]
Length = 515
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 169/383 (44%), Gaps = 57/383 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE+YRP T + + GN + W W++ ++ +L G+
Sbjct: 4 WTERYRPTTLSAVRGNNAARDEFIEWAESWDDH------------------HESVVLHGA 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G++ +E+NASD R + + + + G A N L+
Sbjct: 46 PGVGKTSAAHALASDMGWETVELNASDQRT---SDVIERLAGRAAK-------NATLAGA 95
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + ++IMDE D + DRGG + +K + PI+ I N+ Y + L N
Sbjct: 96 ASGTTSTRQLIIMDEADNIHYQYDRGGKQAVTTLLKDANQPIVLIANEYYDMS-RGLRNA 154
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
D+ FR + I L I E +E E AL+++A+ +GD+R AI LQ
Sbjct: 155 AQDIEFRDISARSIVPVLRNILRKEDIEFEEAALKQIAEVNSGDLRAAIKDLQTTVEGSD 214
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I DD++ + +D + F+ +D + + + + D+ + DL+ + +
Sbjct: 215 RITVDDVK----TGGRDRAMGLFSFLDSVLKEDAAEEALQNSYDVDETPDDLLKWVEDKV 270
Query: 645 YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIR---RNQQWQLSQSSSLASCIIP 701
+ Y + +ARA E +S+ DI+ ++ N +W + +LA +
Sbjct: 271 PLVYDDAE-----------LARAYEFLSNADIWTNRVYATDYNYRWWRYATDNLAGGVAA 319
Query: 702 AALMHGQRETLEQGERNFNRFGG 724
A RET G + R+GG
Sbjct: 320 A------RETQRGG---WTRYGG 333
>gi|448569391|ref|ZP_21638651.1| replication factor C large subunit [Haloferax lucentense DSM 14919]
gi|448600161|ref|ZP_21655874.1| replication factor C large subunit [Haloferax alexandrinus JCM
10717]
gi|445724524|gb|ELZ76156.1| replication factor C large subunit [Haloferax lucentense DSM 14919]
gi|445735571|gb|ELZ87120.1| replication factor C large subunit [Haloferax alexandrinus JCM
10717]
Length = 486
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 158/354 (44%), Gaps = 64/354 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +A ++
Sbjct: 2 VDWTEKYRPSTLSEVRGNNKARDALAEWAKTWDDH------------------REAVVVH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSR---------GKADAKISKGIGGSNANSIK 454
GSPG+GKT+AA + +G++ +E+NASD R G+A AK + G S S +
Sbjct: 44 GSPGIGKTSAAHALAADMGWETVELNASDQRTGDVIERFAGRA-AKNATLAGSSAGTSTR 102
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDR 513
+LV I+DE D + DRGG + + +K S PI+ I N+
Sbjct: 103 QLV-------------------ILDEADNIHGNYDRGGASAVTRLVKSSSQPIVLIANEF 143
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
Y + L N C ++ FR + I L I EGLE AL+ +A+ +GD+R A+
Sbjct: 144 YDMS-RGLRNACQEIEFRDVSARSIVPVLRDICRKEGLEFESDALDRIAEMNSGDLRSAV 202
Query: 574 NQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSD 633
N LQ ++ I +D+ + +D + F +D + + + D+ +
Sbjct: 203 NDLQAIAEGREKITEEDV----VMGDRDRSVGLFEFLDAVLKEESAQDALYTAYDVDETP 258
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
DL + + + Y P DE +ARA + +++ D + ++R Q +
Sbjct: 259 DDLTKWVEDKVSLVYEP-----DE------LARAYDFLANADRWLGRVRATQNY 301
>gi|448623358|ref|ZP_21669901.1| replication factor C large subunit [Haloferax denitrificans ATCC
35960]
gi|445752760|gb|EMA04182.1| replication factor C large subunit [Haloferax denitrificans ATCC
35960]
Length = 489
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 160/359 (44%), Gaps = 64/359 (17%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + L W W++ +A ++ GS
Sbjct: 4 WTEKYRPSTLSEVRGNNKARDALAEWAKTWDDH------------------REAVVVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSR---------GKADAKISKGIGGSNANSIKEL 456
PG+GKT+AA + +G++ +E+NASD R G+A AK + G S S ++L
Sbjct: 46 PGIGKTSAAHALAADMGWETVELNASDQRTGDVIERFAGRA-AKNATLAGSSTGTSTRQL 104
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYS 515
V I+DE D + DRGG + + +K S PI+ I N+ Y
Sbjct: 105 V-------------------ILDEADNIHGNYDRGGASAVTRLVKSSSQPIVLIANEFYD 145
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ L N C ++ FR + I L I EGLE AL+ +A+ +GD+R A+N
Sbjct: 146 MS-RGLRNACQEIEFRDVSARSIVPVLRDICRKEGLEFESDALDRIAEMNSGDLRSAVND 204
Query: 576 LQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPD 635
LQ ++ I +D+ + +D + F +D + + + D+ + D
Sbjct: 205 LQAVAEGREKITEEDV----VMGDRDRSVGLFEFLDAVLKEESAQDALYTAYDVDETPDD 260
Query: 636 LVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
L + + + Y P DE +ARA + +++ D + ++R Q + + ++
Sbjct: 261 LTKWVEDKVSLVYEP-----DE------LARAYDFLANADRWLGRVRATQNYSYWRYAT 308
>gi|154150617|ref|YP_001404235.1| replication factor C large subunit [Methanoregula boonei 6A8]
gi|166225153|sp|A7I781.1|RFCL_METB6 RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|153999169|gb|ABS55592.1| AAA ATPase, central domain protein [Methanoregula boonei 6A8]
Length = 481
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 129/273 (47%), Gaps = 40/273 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP+ +IVGN V+Q+ W W + K +L
Sbjct: 1 MEWAEKYRPEHLADIVGNTSAVRQMADWAKTWTAR------------------SKPLLLY 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKT++ + + + + IE+NASD R A + G G + A+
Sbjct: 43 GKPGIGKTSSVYALARDMNWDVIELNASDQRTAAVIERIAGAGSTTAS------------ 90
Query: 464 ANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + ++IMDE D + DRGG ++ IK ++ PI+ I ND Y + L
Sbjct: 91 ----LTGSARKLIIMDEADNLQGTADRGGAKAILECIKNARQPIVLIANDLYGLAAE-LR 145
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
C ++FR + IA RL I ++E + +E A+ E+A+ GD+R A+N L ++
Sbjct: 146 LRCEPVQFRALPARSIAPRLKYICSSEKIACSESAVHEIAESAEGDMRSAVNMLYASAIG 205
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615
+ ++ +S KDE +S F+ V +FG
Sbjct: 206 RQSLDGKNVH----TSQKDERVSIFSLVTAVFG 234
>gi|282163105|ref|YP_003355490.1| replication factor C large subunit [Methanocella paludicola SANAE]
gi|282155419|dbj|BAI60507.1| replication factor C large subunit [Methanocella paludicola SANAE]
Length = 506
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 169/358 (47%), Gaps = 53/358 (14%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKA 399
++ + W EKYRP + + ++GN VK L W E F S +KA
Sbjct: 3 EERCMDWAEKYRPVSLSGVLGNDAAVKALR----KWAETF--------------GSGKKA 44
Query: 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSN 459
AIL G PG+GKT+AA + +G+ IE+NASD R K DA I+K + GS + + +N
Sbjct: 45 AILYGGPGIGKTSAALALAHDMGWDYIEMNASDQRTK-DA-INK-VAGSASKTGTFGGTN 101
Query: 460 EALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKL 518
E + +LI+DE D + DRGG A +I IK + PII I ND Y+
Sbjct: 102 E------------RRLLILDEADNLHGNYDRGGEAAIINVIKNTNQPIILIANDFYALS- 148
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
K L + ++FR I K L +I AE ++ AL ++A+R N D+R AIN LQ
Sbjct: 149 KPLRDAAEPIQFRALLSTSIVKALKKICAAENIKCQPEALMKIAERTN-DMRSAINDLQA 207
Query: 579 MSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF-GFNGGKLRMDERIDLSMSDPDLV 637
++ + D+ + +D S F + +F G + GK R +DL S DL+
Sbjct: 208 AAMGREEVTLADVS----TGERDVPESIFKVMGLIFRGDDPGKARR-AVMDLDESPEDLI 262
Query: 638 PLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
+ + Y + R +++S D+F ++RR + + + +S
Sbjct: 263 GWVDENLPREYHDGD-----------LERGFDALSKADLFLARVRRRMDYGMWRYASF 309
>gi|433425430|ref|ZP_20406706.1| replication factor C large subunit [Haloferax sp. BAB2207]
gi|432197824|gb|ELK54179.1| replication factor C large subunit [Haloferax sp. BAB2207]
Length = 488
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 158/354 (44%), Gaps = 64/354 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +A ++
Sbjct: 2 VDWTEKYRPSTLSEVRGNNKARDALAEWAKTWDDH------------------REAVVVH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSR---------GKADAKISKGIGGSNANSIK 454
GSPG+GKT+AA + +G++ +E+NASD R G+A AK + G S S +
Sbjct: 44 GSPGIGKTSAAHALAADMGWETVELNASDQRTGDVIERFAGRA-AKNATLAGSSAGTSTR 102
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDR 513
+LV I+DE D + DRGG + + +K S PI+ I N+
Sbjct: 103 QLV-------------------ILDEADNIHGNYDRGGASAVTRLVKSSSQPIVLIANEF 143
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
Y + L N C ++ FR + I L I EGLE AL+ +A+ +GD+R A+
Sbjct: 144 YDMS-RGLRNACQEIEFRDVSARSIVPVLRDICRKEGLEFESDALDRIAEMNSGDLRSAV 202
Query: 574 NQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSD 633
N LQ ++ I +D+ + +D + F +D + + + D+ +
Sbjct: 203 NDLQAIAEGREKITEEDV----VMGDRDRSVGLFEFLDAVLKEESAQDALYTAYDVDETP 258
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
DL + + + Y P DE +ARA + +++ D + ++R Q +
Sbjct: 259 DDLTKWVEDKVSLVYEP-----DE------LARAYDFLANADRWLGRVRATQNY 301
>gi|292656553|ref|YP_003536450.1| replication factor C large subunit [Haloferax volcanii DS2]
gi|448290554|ref|ZP_21481702.1| replication factor C large subunit [Haloferax volcanii DS2]
gi|291372005|gb|ADE04232.1| replication factor C large subunit [Haloferax volcanii DS2]
gi|445578464|gb|ELY32869.1| replication factor C large subunit [Haloferax volcanii DS2]
Length = 488
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 158/354 (44%), Gaps = 64/354 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +A ++
Sbjct: 2 VDWTEKYRPSTLSEVRGNNKARDALAEWAKTWDDH------------------REAVVVH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSR---------GKADAKISKGIGGSNANSIK 454
GSPG+GKT+AA + +G++ +E+NASD R G+A AK + G S S +
Sbjct: 44 GSPGIGKTSAAHALAADMGWETVELNASDQRTGDVIERFAGRA-AKNATLAGSSAGTSTR 102
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDR 513
+LV I+DE D + DRGG + + +K S PI+ I N+
Sbjct: 103 QLV-------------------ILDEADNIHGNYDRGGASAVTRLVKSSSQPIVLIANEF 143
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
Y + L N C ++ FR + I L I EGLE AL+ +A+ +GD+R A+
Sbjct: 144 YDMS-RGLRNACQEIEFRDVSARSIVPVLRDICRKEGLEFESDALDRIAEMNSGDLRSAV 202
Query: 574 NQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSD 633
N LQ ++ I +D+ + +D + F +D + + + D+ +
Sbjct: 203 NDLQAIAEGREKITEEDV----VMGDRDRSVGLFEFLDAVLKEESAQDALYTAYDVDETP 258
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
DL + + + Y P DE +ARA + +++ D + ++R Q +
Sbjct: 259 DDLTKWVEDKVSLVYEP-----DE------LARAYDFLANADRWLGRVRATQNY 301
>gi|284161883|ref|YP_003400506.1| ATPase AAA [Archaeoglobus profundus DSM 5631]
gi|284011880|gb|ADB57833.1| AAA ATPase central domain protein [Archaeoglobus profundus DSM
5631]
Length = 499
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 176/360 (48%), Gaps = 46/360 (12%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRPKT ++V ++ +++++ W W E +K +L
Sbjct: 1 MLWVEKYRPKTLKDVVADKDILERVIAWAKRWQE----------------GIPQKPLLLG 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA-- 461
G PG+GKT+ A + G++ +E+NASD R +I + I G A S E +S+E
Sbjct: 45 GPPGVGKTSLALALANTFGWEVVELNASDQRS---WQIIRRIVGEAAFS--ETISSEGEF 99
Query: 462 LSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKIS-KIPIICICNDRYSQKLK 519
LS+ R K ++++DEVD +S D GG + LI +K + PII ND Y K
Sbjct: 100 LSSESGRLK----LILLDEVDNISKKEDFGGESALIKLLKRKPRQPIILTANDPYKLS-K 154
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L + C ++F++ R +I K L +I +EG++ + AL +A GD+R AIN LQ +
Sbjct: 155 ELRDLCEFVQFKRLRTDQIVKVLERICASEGIKADRNALRLIAQNAGGDLRAAINDLQAI 214
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPL 639
+ I+ +D+ + S + ++ F + K+F + D + L S DL+ +
Sbjct: 215 AEGRREIRAEDV----VVSKRMQETDVFKVMQKIFKRFDRTVYTDA-MSLDESPEDLI-V 268
Query: 640 LIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCI 699
I EN P DE+ R L+ +S D+F ++RR ++L + ++ +
Sbjct: 269 WIDENL----PLEYEGDELLRAYLV------LSRADMFLGRVRRRGFYRLWRYATYLMTV 318
>gi|335436421|ref|ZP_08559216.1| replication factor C large subunit [Halorhabdus tiamatea SARL4B]
gi|334897733|gb|EGM35862.1| replication factor C large subunit [Halorhabdus tiamatea SARL4B]
Length = 498
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 160/365 (43%), Gaps = 49/365 (13%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE +RP T E+ GN + L W W + +A IL GS
Sbjct: 4 WTETHRPSTLTEVRGNDKARDALQEWADTWPDH------------------REAVILYGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + + + IE+NASDSR K + I+ + A S
Sbjct: 46 PGVGKTSAAHALANDMDWPTIELNASDSRTK--------------DVIERVAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++I+DE D + DRGG + + +K ++ P++ I N+ Y L N
Sbjct: 92 LTQGGSGRRLVILDEADNLHGNVDRGGTRAITSLVKEAQQPMVLIANEFYEMS-NGLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C D+ FR + I L I E + E AL ++A+ +GD+R AIN LQ ++
Sbjct: 151 CRDIEFRDVSARSIVPVLRDICRQEDVGFEEDALRKIAEMNDGDLRGAINDLQAIAEGRE 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
+ DD+ ++S +D F+ +D + + ++ D+ + DL+ +
Sbjct: 211 TVTEDDV----VTSERDRTTDIFSFLDTVLKEADAQEALEASYDVDETPDDLISWIEDNV 266
Query: 645 YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAAL 704
+Y + +A A S+++ D + ++R Q + + +S A AA
Sbjct: 267 PKDYEGAE-----------LAAAYRSLANADRWLGRVRATQNYTFWRYASDAMTAGVAAA 315
Query: 705 MHGQR 709
G++
Sbjct: 316 RSGEK 320
>gi|374327675|ref|YP_005085875.1| replication factor C large subunit [Pyrobaculum sp. 1860]
gi|356642944|gb|AET33623.1| replication factor C large subunit [Pyrobaculum sp. 1860]
Length = 422
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 171/348 (49%), Gaps = 31/348 (8%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPK+ +IV ++ L +W+ + + + KK + + +A +L+
Sbjct: 3 LPWVEKYRPKSFADIVNQEEAKYVLASWICAKFKAPKEFCARWAKKKDREITEARAVLLA 62
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT + + + ++ IE+NASD R A ++++V +
Sbjct: 63 GPPGVGKTTIVHALAREIRYELIELNASDVR--------------TAERLRQVVGSGLRE 108
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+++ + +++ DEVDG+ D+GG+ +I ++ +K+PI+ N+ Y K + L
Sbjct: 109 SSL--FGYEGKIVLFDEVDGLHVKEDKGGLEAIIDIVETAKVPIVMTANNPYDPKFRPLR 166
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ-YMSL 581
+ + R+ + E+ + L +I EG + + AL +A GD+R AIN LQ Y++
Sbjct: 167 DLSLVVNLRRLSEDEVVEVLRRICVNEGAKCEDEALRSIAKSSMGDLRAAINDLQMYLTG 226
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLI 641
++ DDI++ + ++ +S F +D+++ DE +S + P
Sbjct: 227 GRKMLVLDDIKR---AGERNPQLSMFEILDRVYKARW----FDEARAVSFN-----PSFD 274
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
E Y + S K L ++ A + +S D+F +I+R Q+W+L
Sbjct: 275 WEQYFVWALESIPV-VYKDLEAMSTAYDRLSKADVFIGRIKRMQEWEL 321
>gi|409044765|gb|EKM54246.1| hypothetical protein PHACADRAFT_210061 [Phanerochaete carnosa
HHB-10118-sp]
Length = 674
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 175/412 (42%), Gaps = 70/412 (16%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDAS------- 395
S W ++YRP+ +++G+ +L +++ W+ W+ + G ++ K+ D
Sbjct: 29 STLWVDRYRPQRYIDLLGDDRLHREVMAWVKEWD--YCVFGKRKGSKRARDEENLDEHRR 86
Query: 396 -AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIK 454
EK ++SG PG+GKTT A +V + G+ EVNASD+R +A +
Sbjct: 87 PKEKILLISGPPGLGKTTLAHIVAKQAGYSVFEVNASDAR--------------SAQIVD 132
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG---DRGGIADLIASI------------ 499
E + S S P T+L++DE+DG + G G I L+ I
Sbjct: 133 ERIRPALESGATIGSSRP-TLLVVDEIDGATGGTDSSAGFIHRLVHLIHDKPKRRAKRGE 191
Query: 500 ----KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNE 555
+ PIICICND Y+ L L +RF +P + RL +I EGL+
Sbjct: 192 PQTHRPLLRPIICICNDLYASSLVKLRPNARIVRFNRPNDYRLVNRLREICELEGLKAQS 251
Query: 556 IALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF- 614
AL L GD+R +N LQ + + + IR + K+ ++S ++ LF
Sbjct: 252 CALTTLVGLAQGDLRGCLNTLQLIRARNEEVTENVIRS-ATTGMKEAEVSQTAVLNDLFT 310
Query: 615 ----------GFNGGKL-----RMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
G L R+ ++ S + PD + + E+Y + A
Sbjct: 311 PLPHRRAKELGLTEDDLARYVGRLSRTVEASGA-PDRIAIGCFEHYATLKRHDAS----- 364
Query: 660 RLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRET 711
+ A E ++ D F ++R +++ L+Q L ++P + +R T
Sbjct: 365 -FARYLSADEWLTTYDAFAGEMRAEREYALAQ--YLPYLLVPFYPLFHERGT 413
>gi|448353083|ref|ZP_21541861.1| replication factor C large subunit [Natrialba hulunbeirensis JCM
10989]
gi|445641150|gb|ELY94233.1| replication factor C large subunit [Natrialba hulunbeirensis JCM
10989]
Length = 514
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 34/247 (13%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE YRP T +E+ GN + +L W W++ A I+ GS
Sbjct: 4 WTETYRPTTLSEVRGNNKARDKLKEWAETWDDH------------------RDAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + LG+ +E+NASDSRG A+ I+ + A S
Sbjct: 46 PGVGKTSAAHALANDLGWPVMELNASDSRG--------------ADVIERVAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++I+DE D D GG ++ +K + P++ + N+ Y +SL +
Sbjct: 92 LTGGESGRRLVILDEADNFHGNADYGGSREVTRVVKSANQPMVLVANEFYDMS-QSLRSA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I E +E + AL+++A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREDIEFEDEALQKIAEDTSGDLRSAVNDLQAVAEEAE 210
Query: 585 VIKYDDI 591
+ DD+
Sbjct: 211 RLTVDDV 217
>gi|1066815|gb|AAA81558.1| nonamer binding protein [Mus musculus]
Length = 428
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 74/100 (74%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 320 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 379
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR 278
VSKKTNYL+ D +KS KA LGT L EDGL D+IR
Sbjct: 380 VSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 419
>gi|555972|gb|AAB60452.1| replication factor C large subunit [Mus musculus]
Length = 565
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 74/100 (74%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 378 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 437
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR 278
VSKKTNYL+ D +KS KA LGT L EDGL D+IR
Sbjct: 438 VSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 477
>gi|305663892|ref|YP_003860180.1| AAA ATPase [Ignisphaera aggregans DSM 17230]
gi|304378461|gb|ADM28300.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230]
Length = 480
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 164/354 (46%), Gaps = 52/354 (14%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKA 399
Q ++ W KYRPKT ++IV + ++ WL W +R KA
Sbjct: 4 QYRNIPWIIKYRPKTLSDIVNQDEAKNKVLEWLKKW------PNVQR-----------KA 46
Query: 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSN 459
+L G PG GKT+ + + ++ IE+NASD R ++D +
Sbjct: 47 LLLYGPPGCGKTSLVEAIANEFKYELIEMNASDFRRRSD------------------IER 88
Query: 460 EALSANMDRSKHPKT--VLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQ 516
A+ A+ +S KT ++++DEVDG+SA D GGI + ++ + +P+I N+ Y
Sbjct: 89 IAIRASSMQSIFGKTRKIILLDEVDGISAKEDEGGIEAIKQLVEKTSVPVIMTANNPYDP 148
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
L+ L ++F+K K ++ L +I AE L +E A++ + +R GD+R AIN L
Sbjct: 149 SLRVLREIAEMVQFKKLSKSDMRMVLNKICRAENLRCDEEAIDYIIERAEGDLRAAINDL 208
Query: 577 QYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDL 636
Q + + D R ++L +D++ PF + +F N + + + D +
Sbjct: 209 QAVGEGFGEVTLD--RAKILLRPRDKEKDPFETLRAIFSSNYA-WQARAVTNQTQLDHEQ 265
Query: 637 VPLLIQENY-INYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+ L ++EN I Y + +ARA + +S D++ +I R W L
Sbjct: 266 LKLWLEENIPIQYTD----------IEDMARAFDMLSKADVYLGRIVRTGDWDL 309
>gi|345006821|ref|YP_004809674.1| replication factor C large subunit [halophilic archaeon DL31]
gi|344322447|gb|AEN07301.1| Replication factor C large subunit [halophilic archaeon DL31]
Length = 494
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 126/275 (45%), Gaps = 43/275 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE YRP T +E+ GN + W W++ +A IL GS
Sbjct: 4 WTESYRPSTLSEVRGNNKARDAFEEWGRSWDDH------------------TEAVILYGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G++ +E+NASD R A++I+ A +A
Sbjct: 46 PGVGKTSAAHALAADMGWETVELNASDQR--------------TADAIERFAGRAARNAT 91
Query: 466 MDRSKHPKT-----VLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLK 519
+ S + ++I+DE D + DRGG + +K + PI+ I N+ Y +
Sbjct: 92 LGGSASGEVGGGRQLVIVDEADNIHGNYDRGGAQAVTNLVKEANQPIVLIANEFYEMS-R 150
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L N C D+ FR + I L I EG+E ALE +AD +GD+R A+ LQ
Sbjct: 151 GLRNACQDIEFRDVSARSIVPVLRDICRKEGIEFESDALERIADANSGDLRGAVKDLQAT 210
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ + + DD+ ++ +D + FT +D +
Sbjct: 211 AEGKTHLTVDDV----VTGDRDTTVGIFTVLDAIL 241
>gi|448431212|ref|ZP_21584983.1| replication factor C large subunit [Halorubrum tebenquichense DSM
14210]
gi|445688148|gb|ELZ40415.1| replication factor C large subunit [Halorubrum tebenquichense DSM
14210]
Length = 504
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 161/346 (46%), Gaps = 41/346 (11%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTE+YRP T +E+ GN + W W++ +A +L
Sbjct: 2 VDWTEQYRPSTLSEVRGNDKARDAFAEWARSWDDH------------------HEAVVLH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + +G++ +E+NASD R AD I + G + N+ + +
Sbjct: 44 GSPGVGKTSAAHALANDMGWETVELNASDQR-TADV-IERFAGRAARNATLGGSAAGGGA 101
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
A D + + ++++DE D + DRGG + + +K S PI+ I ND Y + L
Sbjct: 102 AGGDTAS--RQLVVLDEADNIHGNYDRGGASAITKLVKESGQPIVLIANDYYDMS-RGLR 158
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N ++ FR + I L I EG+E AL+++A+ GD+R A+N LQ +
Sbjct: 159 NATQEIEFRDVSARSIVPVLRDICRKEGIEFESDALQQIAEGNRGDLRGAVNDLQAATQG 218
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
I D+ ++ +D+ + F +D + G+ + + + PD + I+
Sbjct: 219 RDSITVADV----VTGDRDKALGLFPFLDAVLKEESGEEALQSAYAVDET-PDDLAAWIE 273
Query: 643 ENYIN-YRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
N ++ Y P+ A RA + +++ D++ ++R Q +
Sbjct: 274 NNVLDVYEPTEA-----------VRAYDFLANADVWLGRVRATQNY 308
>gi|88602207|ref|YP_502385.1| replication factor C large subunit [Methanospirillum hungatei JF-1]
gi|110287809|sp|Q2FQR4.1|RFCL_METHJ RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|88187669|gb|ABD40666.1| replication factor C large subunit [Methanospirillum hungatei JF-1]
Length = 483
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 144/305 (47%), Gaps = 47/305 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP+ NE+VGN++ + Q+ W W + IL
Sbjct: 1 MDWAEKYRPRHLNEMVGNREALHQMSEWATRWTVE------------------SPPLILY 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKT++A + + ++ +E+NASD R K A I K GGS S +L+
Sbjct: 43 GKPGIGKTSSAWALAHDMNWEVVELNASDQRTK--AVIEKVAGGS--------ASTGSLT 92
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ ++I+DE D + DRGG + I+ ++ P+I I ND Y ++
Sbjct: 93 GA------ARKLIILDEADNLQGNADRGGARAIAEVIRQARQPLILIANDLYGLD-GTIR 145
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N C+ ++F+ + + RL +I + E L + AL ++A++ GDIR A+ L ++
Sbjct: 146 NLCTKVQFKALPAKSLVPRLREICSREQLTCSAQALTDIAEQSGGDIRSAVTMLYASAIG 205
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMS---DPDLVPL 639
+ DD+ SAKD S F V G+ ++ +D+SMS PD +
Sbjct: 206 KDTVGEDDVS----ISAKDSRASIFDLVAATLGYR----QVPSLLDMSMSVDETPDTILQ 257
Query: 640 LIQEN 644
I+ N
Sbjct: 258 WIEGN 262
>gi|74222286|dbj|BAE26945.1| unnamed protein product [Mus musculus]
gi|74226849|dbj|BAE27069.1| unnamed protein product [Mus musculus]
Length = 584
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 74/100 (74%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 378 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 437
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR 278
VSKKTNYL+ D +KS KA LGT L EDGL D+IR
Sbjct: 438 VSKKTNYLVMGHDSGQSKSDKAAALGTKILDEDGLLDLIR 477
>gi|213406089|ref|XP_002173816.1| chromosome transmission fidelity protein [Schizosaccharomyces
japonicus yFS275]
gi|212001863|gb|EEB07523.1| chromosome transmission fidelity protein [Schizosaccharomyces
japonicus yFS275]
Length = 825
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 128/273 (46%), Gaps = 44/273 (16%)
Query: 336 GQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF--LDTGTKRNGKKQND 393
Q + L WT+KYRP+ ++VG++++ + W+ W+ L RNG +
Sbjct: 211 SQTSKTDGLLWTDKYRPQLFRDLVGDERVHRSAMHWIKEWDSCVFGLSPPPSRNGTAKPQ 270
Query: 394 ASAE-------KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIG 446
+ + +L+G PG GKTT A ++ + G+ +EVNASD R
Sbjct: 271 LKLDPYGRPEKRVLLLTGPPGSGKTTLAHVIARQAGYNVVEVNASDDR------------ 318
Query: 447 GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLI---------- 496
AN++K+ ++ EA++ + S P T ++ DE+DG G +ADL+
Sbjct: 319 --TANTVKQKIA-EAINTHTAFSSRP-TCIVADEIDGGDPGFARALADLLIGDERATSAI 374
Query: 497 ---------ASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
+ K+ PIICICND ++ L++L Y + F+ + + RL +
Sbjct: 375 TNSQKRKRNTNRKLILRPIICICNDVFTPSLRTLRPYARIVYFKPAPQAALVGRLRTVCR 434
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+GL + +L L D DIR ++N LQ +S
Sbjct: 435 LQGLNADSRSLTVLTDLCKFDIRSSLNALQMLS 467
>gi|147919922|ref|YP_686325.1| replication factor C, large subunit [Methanocella arvoryzae MRE50]
gi|121687915|sp|Q0W3P4.1|RFCL_UNCMA RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|110621721|emb|CAJ36999.1| replication factor C, large subunit [Methanocella arvoryzae MRE50]
Length = 553
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 104/355 (29%), Positives = 166/355 (46%), Gaps = 59/355 (16%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP + +IVGN VK L W E F + +KA IL G
Sbjct: 10 WTEKYRPVSLADIVGNDAAVKALR----QWAETF--------------GTGKKAVILYGG 51
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ IE+NASD R K ++I + A++
Sbjct: 52 PGVGKTSAALALAHDMGWDYIELNASDVRTK--------------DAINRIAGPAAMAGT 97
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++I+DE D + DRGG A +I I+ + P+I I ND Y+ K L
Sbjct: 98 FEGTGG-RRLVILDEADNLHGNYDRGGEAAIINVIRNASQPVILIANDMYAMS-KPLRES 155
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
++FR +AK L ++ EGL+ + AL ++A+R N D+R AIN LQ +
Sbjct: 156 ALQIQFRAILSTSVAKVLRKVCANEGLKCDPEALMKIAERTN-DLRSAINDLQAAAQGSG 214
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFG--FNGGKLR--MDERIDLSMSDPDLVPLL 640
+ D+ S D D+ P T + K+ G F G +R ++ L + DL+
Sbjct: 215 QVTVADV------STGDRDV-PET-IFKVMGMIFRGKNMREALNATYGLDENPEDLIG-W 265
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
+ EN P D+++ R E++S D++ + RR Q + + + +
Sbjct: 266 VDENL----PREYQDDDLE------RGFEALSRADVYLGRTRRRQDYGMWRYAGF 310
>gi|448474345|ref|ZP_21602204.1| replication factor C large subunit [Halorubrum aidingense JCM
13560]
gi|445817652|gb|EMA67521.1| replication factor C large subunit [Halorubrum aidingense JCM
13560]
Length = 491
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 160/344 (46%), Gaps = 41/344 (11%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + TW W++ +A +L GS
Sbjct: 4 WTEKYRPSTLSEVRGNDKARDAFATWARSWDDH------------------REAVVLHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G++ +E+NASD R AD I + G + N+ + +A
Sbjct: 46 PGVGKTSAAHALANDMGWETVELNASDQR-TADV-IERFAGRAARNATLGGSAAGGGAAG 103
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
D + + ++I+DE D + DRGG + + +K S PI+ I N+ Y + L N
Sbjct: 104 GDTAS--RQLVILDEADNIHGNYDRGGASAITELVKESGQPIVLIANEFYDMS-RGLRNA 160
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
++ FR + I L + EG+E AL+ +A+R GD+R AIN LQ +
Sbjct: 161 TQEIEFRDVSARSIVPVLRDVCRKEGIEFEPDALQRIAERNRGDLRGAINDLQAATEGRD 220
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I +D+ ++ +D+ + F +D + + + + + PD + ++ N
Sbjct: 221 SIAVEDV----VTGDRDKALGLFPFLDAVLKEESAEEALQSAYAVDET-PDDLTKWVENN 275
Query: 645 YIN-YRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
++ Y P A RA + +++ D++ ++R Q +
Sbjct: 276 VLDVYDPMEA-----------VRAYDFLANADVWLGRVRATQNY 308
>gi|156938087|ref|YP_001435883.1| replication factor C large subunit [Ignicoccus hospitalis KIN4/I]
gi|166977383|sp|A8AC24.1|RFCL_IGNH4 RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|156567071|gb|ABU82476.1| replication factor C large subunit [Ignicoccus hospitalis KIN4/I]
Length = 476
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 164/351 (46%), Gaps = 46/351 (13%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
S++ W KYRPK +++ ++ + L W+ W +GT ++AA+
Sbjct: 2 SAVPWIIKYRPKRVEDVIDQEKAKEVLIPWIKKWL-----SGT---------PPEKRAAL 47
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
L G PG+GKT+ + +C + IE+NASD R K D + A
Sbjct: 48 LWGPPGVGKTSLVEAICNEFNLEKIEMNASDFRRKGD------------------IERVA 89
Query: 462 LSANMDRSKHPKT--VLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKL 518
++A + P ++++DEVDG+S GD G +A ++ IK +K PI+ ND + L
Sbjct: 90 IAAATKKPLPPWKGRLILLDEVDGLSPRGDEGAVAAILELIKKTKNPIVMTANDPWGTHL 149
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ + + F++ K + + L++I EG+ + A++ + ++ GD+R +IN LQ
Sbjct: 150 RPIREESLLVEFKRIPKTKAREFLLKICEKEGVYCEKEAVDYIIEKNKGDLRASINDLQS 209
Query: 579 MSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVP 638
++ + + D L+ +D ++P+ + LF ++ + + + + D D +
Sbjct: 210 IAEAYGKVTLDLASALLVE--RDRVLTPWEMLQSLF-YSKYSWQARKAVTSTDLDYDTLF 266
Query: 639 LLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
L I EN P G D + R E++S D+ +IRR W L
Sbjct: 267 LWIAENV----PKQYGDDPYD----LWRGMEAVSRADVIYGRIRRTMNWSL 309
>gi|448545771|ref|ZP_21626182.1| replication factor C large subunit [Haloferax sp. ATCC BAA-646]
gi|448547884|ref|ZP_21627270.1| replication factor C large subunit [Haloferax sp. ATCC BAA-645]
gi|448556790|ref|ZP_21632384.1| replication factor C large subunit [Haloferax sp. ATCC BAA-644]
gi|445703581|gb|ELZ55507.1| replication factor C large subunit [Haloferax sp. ATCC BAA-646]
gi|445715695|gb|ELZ67450.1| replication factor C large subunit [Haloferax sp. ATCC BAA-645]
gi|445716139|gb|ELZ67890.1| replication factor C large subunit [Haloferax sp. ATCC BAA-644]
Length = 487
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 160/361 (44%), Gaps = 64/361 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +A ++
Sbjct: 2 VDWTEKYRPSTLSEVRGNNKARDALAEWAEAWDDH------------------REAVVVH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSR---------GKADAKISKGIGGSNANSIK 454
GSPG+GKT+AA + +G++ +E+NASD R G+A AK + G S S +
Sbjct: 44 GSPGIGKTSAAHALAADMGWETVELNASDQRTGDVIERFAGRA-AKNATLAGSSTGTSTR 102
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDR 513
+LV I+DE D + DRGG + + +K S PI+ I N+
Sbjct: 103 QLV-------------------ILDEADNIHGNYDRGGASAVTRLVKSSSQPIVLIANEF 143
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
Y + L N C ++ FR + I L I EGL AL+ +A+ +GD+R A+
Sbjct: 144 YDMS-RGLRNACQEIEFRDVSARSIVPVLRDICRKEGLAFESDALDRIAEMNSGDLRSAV 202
Query: 574 NQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSD 633
N LQ ++ I +D+ + +D + F +D + + + D+ +
Sbjct: 203 NDLQAIAEGREEITEEDV----VMGDRDRSVGLFEFLDAVLKEESAQDALYTAYDVDETP 258
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
DL + + + Y P DE +ARA + +++ D + ++R Q + + +
Sbjct: 259 DDLTKWVEDKVSLVYEP-----DE------LARAYDFLANADRWLGRVRATQNYSYWRYA 307
Query: 694 S 694
+
Sbjct: 308 T 308
>gi|164654986|ref|XP_001728625.1| hypothetical protein MGL_4224 [Malassezia globosa CBS 7966]
gi|159102506|gb|EDP41411.1| hypothetical protein MGL_4224 [Malassezia globosa CBS 7966]
Length = 621
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 151/344 (43%), Gaps = 61/344 (17%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL-----------------DTGTKRNG 388
W EKYRP+ +++G+ +L ++ WL W+ T T ++G
Sbjct: 2 WVEKYRPRAFTDLMGDDRLHRETLRWLKTWDPCVFGRDAPPPSARSARGNEPSTTTDQHG 61
Query: 389 KKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS 448
+ E+ ++SG PG+GKTT A +V Q G++ E+NASD+R D
Sbjct: 62 RPH-----ERVLLMSGPPGLGKTTLAHVVAQHAGYRVYEMNASDARTAGDVH-------- 108
Query: 449 NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG--------GIADLI---- 496
N ++ + +++L + T++++DE+DG G+ + LI
Sbjct: 109 --NRVRSALESDSLQGHGR-----PTLVVIDEIDGAMGGNEALGTTGFVRALVQLIERGA 161
Query: 497 -ASIKISKI--PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEV 553
+S K + PI+CICND Y+ L+ L +RF +P I +RL +I E L
Sbjct: 162 RSSHKTRPLLRPIVCICNDLYAPALRPLRPLARIVRFHRPPTPMITRRLREICARECLAA 221
Query: 554 NEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKL 613
+ L L D +GDIR ++ L+ + + D I QR KD + +L
Sbjct: 222 DARGLTMLCDVSHGDIRACLHTLELLHRQGGSVHVDAI-QRASLGMKDSVVPLQHIWTQL 280
Query: 614 F--------GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYR 649
F +G ++ + +S +D D + E+Y++ R
Sbjct: 281 FRALDQPHSSLHGSRVHALVQELISYADYDRLARGCFEHYVHLR 324
>gi|448460408|ref|ZP_21597233.1| replication factor C large subunit [Halorubrum lipolyticum DSM
21995]
gi|445807149|gb|EMA57235.1| replication factor C large subunit [Halorubrum lipolyticum DSM
21995]
Length = 497
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 158/353 (44%), Gaps = 41/353 (11%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + W W++ +A +L
Sbjct: 2 VDWTEKYRPSTLSEVRGNDKARDAFAEWARSWDDH------------------REAVVLH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + +G++ +E+NASD R A + + G A + S
Sbjct: 44 GSPGVGKTSAAHALANDMGWETVELNASDQRT---ADVIERFAGRAARNATLGGSAAGGG 100
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
A + ++I+DE D + DRGG + + +K S PI+ I ND Y + L
Sbjct: 101 ATG-GDTASRQLVILDEADNIHGNYDRGGASAITELVKESGQPIVLIANDYYDMA-RGLR 158
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N ++ FR + I L + EG+E ALE +A+R GD+R AIN LQ +
Sbjct: 159 NATEEIEFRDVSARSIVPVLRDVCRKEGIEFESDALERIAERNRGDLRGAINDLQAATEG 218
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
I +D+ ++ +D+ + F +D + + + + + PD + I+
Sbjct: 219 RDSIAVEDV----VTGDRDKALGLFPFLDAVLKEESAEEALQSAYAVDET-PDDLTKWIE 273
Query: 643 ENYIN-YRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
N ++ Y P A RA + +++ D++ ++R Q + + ++
Sbjct: 274 NNVLDVYEPMEA-----------VRAYDFLANADVWLGRVRATQNYTYWRYAT 315
>gi|336476698|ref|YP_004615839.1| AAA ATPase [Methanosalsum zhilinae DSM 4017]
gi|335930079|gb|AEH60620.1| AAA ATPase [Methanosalsum zhilinae DSM 4017]
Length = 507
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 170/355 (47%), Gaps = 49/355 (13%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP + +EIVGN++ V+ L W W + ++A IL+G
Sbjct: 7 WAEKYRPGSLSEIVGNKKAVENLQEWAQKWTYTIPE---------------KRAVILAGR 51
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
G+GKT+AA + G++ IE+NASD R A++++ + + + +
Sbjct: 52 AGIGKTSAAHALANDFGWEIIELNASDKR--------------TADAVERVAGSASKMHS 97
Query: 466 MDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+D S + ++I+DE D + + DRGG + IK +K PI+ I ND Y + S V
Sbjct: 98 LDGST-SRRLIILDEADNLHGSSDRGGTRAIGNIIKRTKQPIVLIANDLYG--ISSTVRS 154
Query: 525 CS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
S +++F + + + L +I EG+ LE++A+ +GD+R A+N LQ +S+
Sbjct: 155 NSLEIKFNSIQSRSMVPALKKICREEGIMCGVGVLEKIAENADGDLRSAVNDLQAVSMGR 214
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQE 643
I +DI +S +D S F + K+F K + L S DLV I E
Sbjct: 215 DEIYIEDI----ATSQRDTQGSIFKVLPKIFKGTDPKKAYEATYSLDESPEDLVH-WIDE 269
Query: 644 NYINYRPSSAG--RDEVKR-LSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
N + G +++K +ARA D++ ++++ Q ++L + + +
Sbjct: 270 NLLYQYSGKEGIVNEDIKNGYGYLARA-------DLYLGRVKKRQNYRLWRYAGM 317
>gi|448583744|ref|ZP_21646967.1| replication factor C large subunit [Haloferax gibbonsii ATCC 33959]
gi|445729097|gb|ELZ80696.1| replication factor C large subunit [Haloferax gibbonsii ATCC 33959]
Length = 487
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 157/354 (44%), Gaps = 64/354 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +A ++
Sbjct: 2 VDWTEKYRPSTLSEVRGNNKARDALAEWAKTWDDH------------------REAVVVH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSR---------GKADAKISKGIGGSNANSIK 454
GSPG+GKT+AA + +G++ +E+NASD R G+A AK + G S S +
Sbjct: 44 GSPGIGKTSAAHALAADMGWETVELNASDQRTGDVIERFAGRA-AKNATLAGSSAGTSTR 102
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDR 513
+LV I+DE D + DRGG + + +K S PI+ I N+
Sbjct: 103 QLV-------------------ILDEADNIHGNYDRGGASAVTRLVKSSSQPIVLIANEF 143
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
Y + L N C ++ FR + I L I EGL AL+ +A+ +GD+R A+
Sbjct: 144 YDMS-RGLRNACQEIEFRDVSARSIVPVLRDICRKEGLAFESDALDRIAEMNSGDLRSAV 202
Query: 574 NQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSD 633
N LQ ++ I +D+ + +D + F +D + + + D+ +
Sbjct: 203 NDLQAIAEGREEITEEDV----VMGDRDRSVGLFEFLDAVLKEKSAQEALYTAYDVDETP 258
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
DL + + + Y P DE +ARA + +++ D + ++R Q +
Sbjct: 259 DDLTKWVEDKVSLVYEP-----DE------LARAYDFLANADRWLGRVRATQNY 301
>gi|71423150|ref|XP_812358.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70877131|gb|EAN90507.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 1008
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 133/292 (45%), Gaps = 53/292 (18%)
Query: 333 KRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK-FLDTGTKRNGKKQ 391
KR+G++ W KY PK E++ + +L WL W+ F DT RN
Sbjct: 201 KRRGRD---EEALWVMKYSPKHFRELLSDDNTNLKLLQWLKSWDAYIFQDTPATRNKGNN 257
Query: 392 NDASA---------------------EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
+D A E+ A+L G PG+GKTT A ++ G++ +E+NA
Sbjct: 258 DDVGAIATNNTTAAANNETSAPTRPEERLAVLVGPPGVGKTTLAHVLAAHCGYETVEINA 317
Query: 431 S-----------------DSRGKADAKISKGIGGSNAN----SIKELVSNEALSANMDRS 469
S +RG+ A + S++N S L + EA + +D
Sbjct: 318 SVDRTSSAMERAIQLAVSPARGRRRALPLSSLSTSSSNVDGASKATLKTREAGVSLVDML 377
Query: 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR 529
PK LI+DE+DG++A +A + I P+ C+CND Y L+SL C +
Sbjct: 378 LRPK-CLIIDEMDGIAAN----VAAFLLQQDI-HCPVFCLCNDFYVPSLRSLRRQCHHVY 431
Query: 530 FRKP-RKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ P R Q + RL +IA EGL V++ L +L NGD+R +N LQ++
Sbjct: 432 YFPPIRPQRLLSRLTEIAELEGLSVSKPVLADLVQSSNGDVRCCLNTLQFLC 483
>gi|399576914|ref|ZP_10770669.1| replication factor C large subunit [Halogranum salarium B-1]
gi|399238358|gb|EJN59287.1| replication factor C large subunit [Halogranum salarium B-1]
Length = 492
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 132/272 (48%), Gaps = 27/272 (9%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + W W++ KA IL
Sbjct: 1 MDWTEKYRPTTLSEVRGNDKARDAFAKWGRTWDDH------------------RKAVILH 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + +G++ +E+NASD R D I + G + N+ + +
Sbjct: 43 GSPGIGKTSAAHALANDMGWETVELNASDKR-TGDV-IERFAGRAAMNATLAGAAEKTGD 100
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
DR ++ + ++++DE D + DRGG + + +K S+ PI+ I N+ Y + L
Sbjct: 101 EATDRQQN-RQLVVLDEADNIHGNYDRGGASAITKLVKQSEQPIVLIANEFYDMS-RGLR 158
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
C D+ FR + I L I EG+E + AL+ +A+ GD+R A+N LQ +
Sbjct: 159 KACQDIEFRDVSARSIVPVLRDICRREGVEYDSDALQRIAEENGGDLRGAVNDLQAAAEG 218
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ + + ++ ++D+ + F +D +
Sbjct: 219 NERVTVESV----VTGSRDQSMGIFAFLDAVL 246
>gi|3342382|gb|AAC40192.1| VIP-receptor-gene repressor protein [Rattus norvegicus]
Length = 656
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+EREEA+ LI+R+GG+VTG+
Sbjct: 376 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGN 435
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKT+YL+ D +KS KA LGT L EDGL D+IR K+ + ++ ++K
Sbjct: 436 VSKKTSYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGKKSKYEIAAEAEMKKE 495
Query: 299 AASLPKKSPQNIEAKSTSAP-KAPIERMKTVASPAK 333
+ L + +N + K +P K +E K+ +P K
Sbjct: 496 KSKLERTPQKNDQGKRKLSPTKRELEPKKSKLTPLK 531
>gi|410720679|ref|ZP_11360032.1| DNA polymerase III, gamma/tau subunit [Methanobacterium sp.
Maddingley MBC34]
gi|410600390|gb|EKQ54918.1| DNA polymerase III, gamma/tau subunit [Methanobacterium sp.
Maddingley MBC34]
Length = 500
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 117/248 (47%), Gaps = 53/248 (21%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKY P+T +++GN++ ++++ W+ W+ +K +L
Sbjct: 1 MLWTEKYSPQTMKDVLGNKKAIEEIENWVESWDH----------------GDPQKCLLLV 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSR---------GKADAKISK-GIGGSNANSI 453
G PG GKTT A LV IE+NASD R G+A A +S G GG
Sbjct: 45 GPPGTGKTTLAHLVAGEFS-DHIELNASDKRSYDIIMNTVGEASASVSLFGQGG------ 97
Query: 454 KELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICND 512
+ ++I+DEVDG+ DRGGI + IK P+I + ND
Sbjct: 98 -------------------RKLIILDEVDGLHGNEDRGGIRAINKIIKEGHHPMIMMAND 138
Query: 513 RYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMA 572
YS++++SL + C ++ K I L +I EG++ E L LA R GD+R A
Sbjct: 139 LYSKRIQSLKSKCQLIKINKVHTNSIVALLKRICAKEGVDFEEHVLRTLAKRSRGDLRSA 198
Query: 573 INQLQYMS 580
IN LQ ++
Sbjct: 199 INDLQVIA 206
>gi|402225108|gb|EJU05169.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 539
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 129/264 (48%), Gaps = 26/264 (9%)
Query: 337 QNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE-KFLDTGTKRNGKKQNDAS 395
Q + + L W ++YRPK +++G+ ++ + +WL W+ F TKR GK+ + A
Sbjct: 4 QTVVEKHL-WVDRYRPKRYLDLLGDDRIHRDTMSWLKEWDHCVFGRKTTKRRGKQDDPAQ 62
Query: 396 ----------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK--ADAKISK 443
EK ++SG PG+GKTT A ++ G+ E+NASD R D +I
Sbjct: 63 EGYEDPYHRPYEKILLISGPPGLGKTTLAHVLATSAGYSVYEINASDERAARVVDDRIRP 122
Query: 444 GI-GGSNANSIKEL--VSNE---ALSANMDRSKHPKTV--LIMDEVDGMSAGDRGGIADL 495
+ GS S K + V +E A +D + + L +D+ +AG R G D+
Sbjct: 123 ALEAGSGVGSKKPVCVVIDEIDGVGGAGVDSNAFINGLIQLTLDKPRKKTAGRRNGQKDV 182
Query: 496 IASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNE 555
++ PIICICND Y+ L+SL + +R R P + RL + EGL+ +
Sbjct: 183 RPLLR----PIICICNDLYAPSLRSLRQHARLVRVRAPTPIMLTNRLRDVCETEGLKADN 238
Query: 556 IALEELADRVNGDIRMAINQLQYM 579
AL L GDIR +N LQ++
Sbjct: 239 RALSALVGVTKGDIRSCLNTLQFI 262
>gi|448465622|ref|ZP_21598888.1| replication factor C large subunit [Halorubrum kocurii JCM 14978]
gi|445814954|gb|EMA64902.1| replication factor C large subunit [Halorubrum kocurii JCM 14978]
Length = 498
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 157/351 (44%), Gaps = 41/351 (11%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + W W++ +A +L GS
Sbjct: 4 WTEKYRPSTLSEVRGNDKARDAFAEWARSWDDH------------------HEAVVLHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G++ +E+NASD R A + + G A + S A
Sbjct: 46 PGVGKTSAAHALANDMGWETVELNASDQR---TADVIERFAGRAARNATLGGSAAGGGAT 102
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ ++I+DE D + DRGG + + +K S PI+ I ND Y + L N
Sbjct: 103 G-GDTASRQLVILDEADNIHGNYDRGGASAITKLVKESGQPIVLIANDYYDMA-RGLRNA 160
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
++ FR + I L + EG+E ALE +A+R GD+R AIN LQ +
Sbjct: 161 TQEIEFRDVSARSIVPVLRDVCRKEGIEFESDALERIAERNRGDLRGAINDLQAATEGRD 220
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
+ +D+ ++ +D+ + F +D + + + + + PD + I+ N
Sbjct: 221 SVAVEDV----VTGDRDKALGLFPFLDAVLKEESAEEALQSAYAVDET-PDDLTKWIENN 275
Query: 645 YIN-YRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
++ Y P A RA + +++ D++ ++R Q + + ++
Sbjct: 276 VLDVYEPMEA-----------VRAYDFLANADVWLGRVRATQNYSYWRYAT 315
>gi|448534442|ref|ZP_21621737.1| replication factor C large subunit [Halorubrum hochstenium ATCC
700873]
gi|445704627|gb|ELZ56538.1| replication factor C large subunit [Halorubrum hochstenium ATCC
700873]
Length = 504
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 159/344 (46%), Gaps = 41/344 (11%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + W W++ +A +L GS
Sbjct: 4 WTEKYRPSTLSEVRGNDKARDAFAEWARSWDDH------------------HEAVVLHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G++ +E+NASD R AD I + G + N+ + +A
Sbjct: 46 PGVGKTSAAHALANDMGWETVELNASDQR-TADV-IERFAGRAARNATLGGSAAGGGAAG 103
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
D + + ++I+DE D + DRGG + + +K S PI+ I ND Y + L N
Sbjct: 104 GDTAS--RQLVILDEADNIHGNYDRGGASAITKLVKESGQPIVLIANDYYDMS-RGLRNA 160
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
++ FR + I L I EG+E AL+++A+ GD+R A+N LQ +
Sbjct: 161 TQEIEFRDVSARSIVPVLRDICRKEGIEFESDALQQIAEGNRGDLRGAVNDLQAATQGRD 220
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I D+ ++ +D+ + F +D + + + + + PD + I+ N
Sbjct: 221 SITVADV----VTGDRDKALGLFPFLDAVLKEESAEEALQSAYAVDET-PDDLAAWIENN 275
Query: 645 YIN-YRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
++ Y P+ A RA + +++ D++ ++R Q +
Sbjct: 276 VLDVYEPTEA-----------VRAYDFLANADVWLGRVRATQNY 308
>gi|71667136|ref|XP_820520.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70885868|gb|EAN98669.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 1008
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 59/295 (20%)
Query: 333 KRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK-FLDTGTKRNGKKQ 391
KR+G++ W KY PK E++ + +L WL W+ F DT RN
Sbjct: 201 KRRGRD---EEALWVMKYSPKHFRELLSDDNTNLRLLQWLKSWDAYIFQDTPATRNTGNN 257
Query: 392 NDASA---------------------EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
++ SA E+ A+L G PG+GKTT A ++ G++ +E+NA
Sbjct: 258 DNVSAISTNNTTAAANNETSAPTRPEERLAVLVGPPGVGKTTLAHVLAAHCGYETVEINA 317
Query: 431 -----------------SDSRGKADA-------KISKGIGGSNANSIKELVSNEALSANM 466
S +RG+ A S + G++ ++K V+ +L +
Sbjct: 318 SVDRTSSAMERAIQLAVSPARGRRRALPLSSLSTSSSNVDGASKATLKTGVAGVSLVDML 377
Query: 467 DRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCS 526
R K LI+DE+DG++A +A + I P+ C+CND Y L+SL C
Sbjct: 378 LRPK----CLIIDEMDGIAA----NVAAFLLQQDI-HCPVFCLCNDFYVPSLRSLRRQCH 428
Query: 527 DLRFRKP-RKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ + P R Q + RL +IA EGL V++ L +L NGD+R +N LQ++
Sbjct: 429 HVYYFPPIRPQRLLSRLSEIAELEGLSVSKPVLADLVQSSNGDVRCCLNTLQFLC 483
>gi|407838271|gb|EKG00011.1| hypothetical protein TCSYLVIO_009065 [Trypanosoma cruzi]
Length = 1008
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 136/299 (45%), Gaps = 59/299 (19%)
Query: 333 KRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK-FLDTGTKRNGKKQ 391
KR+G++ W KY PK E++ + +L WL W+ F DT RN
Sbjct: 201 KRRGRD---EEALWVMKYSPKHFRELLSDDNTNLKLLQWLKSWDAYIFQDTPATRNTGNN 257
Query: 392 NDASA---------------------EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
++ SA E+ A+L G PG+GKTT A ++ G++ +E+NA
Sbjct: 258 DNVSAISTNNTTAAANKETSAPTRPEERLAVLVGPPGVGKTTLAHVLAAHCGYETVEINA 317
Query: 431 -----------------SDSRGK-------ADAKISKGIGGSNANSIKELVSNEALSANM 466
S +RG+ + + S + G++ ++K V+ +L +
Sbjct: 318 SVDRTSSAMERAIQLAVSPARGRRRALPLSSLSASSSNVDGASKATLKAGVAGVSLVDML 377
Query: 467 DRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCS 526
R K LI+DE+DG++A +A + I P+ C+CND Y L+SL C
Sbjct: 378 LRPK----CLIIDEMDGIAA----NVAAFLLQQDI-HCPVFCLCNDFYVPSLRSLRRQCH 428
Query: 527 DLRFRKP-RKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
+ + P R Q + RL +IA EGL V++ L +L NGD+R +N LQ++ S
Sbjct: 429 HVYYFPPIRPQRLLSRLSEIAELEGLSVSKPVLADLVQSSNGDVRCCLNTLQFLCCHTS 487
>gi|375082750|ref|ZP_09729797.1| replication factor C large subunit [Thermococcus litoralis DSM
5473]
gi|374742598|gb|EHR78989.1| replication factor C large subunit [Thermococcus litoralis DSM
5473]
Length = 486
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 155/336 (46%), Gaps = 56/336 (16%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP+ EIV ++ ++++ W+ W GT + +KA +L+
Sbjct: 2 LPWVEKYRPRRLVEIVNQEKALEKVKAWIESWFH-----GTPK----------KKALLLA 46
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT + F+ IE+NASD R KI + + +
Sbjct: 47 GPPGSGKTTTVYALANEYKFEVIELNASDDR--TFGKIERYLNAAY-------------- 90
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
MD + ++ +DE D + IA LI ++ PII N RY + + N
Sbjct: 91 -TMDVFGRRRKLIFLDEADNIEPSGAREIAKLIDK---ARNPIIMSAN-RYWEVPLEIRN 145
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
+ +++ +++I K L +I AEG+ V + L+E+A R GD+R AIN LQ
Sbjct: 146 KAEIVEYKRLSQRDILKALFRIVKAEGIFVPKEVLQEIAKRARGDLRAAINDLQ------ 199
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQE 643
+++ L+ + +D + S F A+ +F + K ++L + PD V L I+E
Sbjct: 200 NIVSGGVEDAELVLAYRDVEKSIFEALGMIFATDNAKRAKMALMNLD-NTPDEVLLWIEE 258
Query: 644 N--YINYRPSSAGRDEVKRLSLIARAAESISDGDIF 677
N Y+ Y+P IARA E+IS DI+
Sbjct: 259 NIPYVYYKPED-----------IARAYEAISRADIY 283
>gi|448440147|ref|ZP_21588395.1| replication factor C large subunit [Halorubrum saccharovorum DSM
1137]
gi|445690664|gb|ELZ42874.1| replication factor C large subunit [Halorubrum saccharovorum DSM
1137]
Length = 503
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 158/344 (45%), Gaps = 41/344 (11%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + W W++ +A +L GS
Sbjct: 4 WTEKYRPSTLSEVRGNDKARDAFAEWARSWDDH------------------REAVVLHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G++ +E+NASD R AD I + G + N+ + +A
Sbjct: 46 PGVGKTSAAHALANDMGWETVELNASDQR-TADV-IERFAGRAARNATLGGSAAGGGAAG 103
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
D + + ++I+DE D + DRGG + + +K S PI+ I ND Y + L +
Sbjct: 104 GDTAS--RQLVILDEADNIHGNYDRGGASAITKLVKESGQPIVLIANDYYDMA-RGLRDA 160
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
++ FR + I L + E +E ALE +A+R GD+R AIN LQ +
Sbjct: 161 TQEIEFRDVSARSIVPVLRDVCRKESIEFESDALERIAERNRGDLRGAINDLQAATEGRD 220
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I +D+ ++ +D+ + F +D + + + + + PD + I+ N
Sbjct: 221 SIAVEDV----VTGDRDKALGLFPFLDAVLKEESAEEALQSAYAVDET-PDDLTKWIENN 275
Query: 645 YIN-YRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
++ Y P A RA + +++ D++ ++R Q +
Sbjct: 276 VLDVYEPMEA-----------VRAYDFLANADVWLGRVRATQNY 308
>gi|390480534|ref|XP_002763589.2| PREDICTED: replication factor C subunit 1, partial [Callithrix
jacchus]
Length = 823
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 86/133 (64%), Gaps = 2/133 (1%)
Query: 147 TESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLG 206
T++P K+ + + S +P + + ++ R+ P G KE+P+GA +CL
Sbjct: 356 TKTPKKT--KSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLE 413
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT
Sbjct: 414 GLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTK 473
Query: 267 FLTEDGLFDMIRA 279
+ EDGL ++IR
Sbjct: 474 IIDEDGLLNLIRT 486
>gi|448427732|ref|ZP_21584007.1| replication factor C large subunit [Halorubrum terrestre JCM 10247]
gi|445677626|gb|ELZ30125.1| replication factor C large subunit [Halorubrum terrestre JCM 10247]
Length = 506
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 162/351 (46%), Gaps = 41/351 (11%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + W W++ +A +L GS
Sbjct: 4 WTEKYRPSTLSEVRGNDKARDAFAEWARSWDDH------------------REAVVLHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G++ +E+NASD R AD I + G + N+ + +A
Sbjct: 46 PGVGKTSAAHALANDMGWETVELNASDQR-TADV-IERFAGRAARNATLGGSAAGGGAAG 103
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
D + + ++I+DE D + DRGG + + +K S PI+ I ND Y + L N
Sbjct: 104 GDTAS--RQLVILDEADNIHGNYDRGGASAITKLVKESGQPIVLIANDFYDMS-RGLRNA 160
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
++ FR + I L + EG+E AL+ +A+ GD+R AIN LQ +
Sbjct: 161 TQEIEFRDVSARSIVPVLRDVCRKEGIEFESDALQRIAEGNRGDLRGAINDLQAATQGRD 220
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I +D+ ++ +D+ + F +D + + + + + PD + I+ N
Sbjct: 221 SITVEDV----VTGDRDKALGLFPFLDAVLKEESAEEALQSAYAVDET-PDDLARWIENN 275
Query: 645 YIN-YRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
++ Y P+ A RA + +++ D++ ++R Q + + ++
Sbjct: 276 LLDVYEPAEA-----------VRAYDFLANADVWLGRVRATQNYSYWRYAT 315
>gi|448485438|ref|ZP_21606663.1| replication factor C large subunit [Halorubrum arcis JCM 13916]
gi|445818092|gb|EMA67959.1| replication factor C large subunit [Halorubrum arcis JCM 13916]
Length = 503
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 162/351 (46%), Gaps = 41/351 (11%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + W W++ +A +L GS
Sbjct: 4 WTEKYRPSTLSEVRGNDKARDAFAEWARSWDDH------------------REAVVLHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G++ +E+NASD R AD I + G + N+ + +A
Sbjct: 46 PGVGKTSAAHALANDMGWETVELNASDQR-TADV-IERFAGRAARNATLGGSAAGGGAAG 103
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
D + + ++I+DE D + DRGG + + +K S PI+ I ND Y + L N
Sbjct: 104 GDTAS--RQLVILDEADNIHGNYDRGGASAITKLVKESGQPIVLIANDFYDMS-RGLRNA 160
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
++ FR + I L + EG+E AL+ +A+ GD+R AIN LQ +
Sbjct: 161 TQEIEFRDVSARSIVPVLRDVCRKEGIEFESDALQRIAEGNRGDLRGAINDLQAATQGRD 220
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I +D+ ++ +D+ + F +D + + + + + PD + I+ N
Sbjct: 221 SITVEDV----VTGDRDKALGLFPFLDAVLKEESAEEALQSAYAVDET-PDDLARWIENN 275
Query: 645 YIN-YRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
++ Y P+ A RA + +++ D++ ++R Q + + ++
Sbjct: 276 LLDVYEPAEA-----------VRAYDFLANADVWLGRVRATQNYSYWRYAT 315
>gi|448504659|ref|ZP_21614000.1| replication factor C large subunit [Halorubrum distributum JCM
9100]
gi|448519106|ref|ZP_21617882.1| replication factor C large subunit [Halorubrum distributum JCM
10118]
gi|445701869|gb|ELZ53841.1| replication factor C large subunit [Halorubrum distributum JCM
9100]
gi|445704122|gb|ELZ56040.1| replication factor C large subunit [Halorubrum distributum JCM
10118]
Length = 503
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 162/351 (46%), Gaps = 41/351 (11%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + W W++ +A +L GS
Sbjct: 4 WTEKYRPSTLSEVRGNDKARDAFAEWARSWDDH------------------REAVVLHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G++ +E+NASD R AD I + G + N+ + +A
Sbjct: 46 PGVGKTSAAHALANDMGWETVELNASDQR-TADV-IERFAGRAARNATLGGSAAGGGAAG 103
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
D + + ++I+DE D + DRGG + + +K S PI+ I ND Y + L N
Sbjct: 104 GDTAS--RQLVILDEADNIHGNYDRGGASAITKLVKESGQPIVLIANDFYDMS-RGLRNA 160
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
++ FR + I L + EG+E AL+ +A+ GD+R AIN LQ +
Sbjct: 161 TQEIEFRDVSARSIVPVLRDVCRKEGIEFESDALQRIAEGNRGDLRGAINDLQAATQGRD 220
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I +D+ ++ +D+ + F +D + + + + + PD + I+ N
Sbjct: 221 SITVEDV----VTGDRDKALGLFPFLDAVLKEESAEEALQSAYAVDET-PDDLTRWIENN 275
Query: 645 YIN-YRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
++ Y P+ A RA + +++ D++ ++R Q + + ++
Sbjct: 276 LLDVYEPAEA-----------VRAYDFLANADVWLGRVRATQNYSYWRYAT 315
>gi|170087144|ref|XP_001874795.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649995|gb|EDR14236.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 887
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 131/309 (42%), Gaps = 67/309 (21%)
Query: 320 APIERM------KTVASPAKRKGQNIQQSS--------LTWTEKYRPKTPNEIVGNQQLV 365
PI R+ + VA K+ N+ QSS + W ++YRP E++GN+++
Sbjct: 209 VPIHRLMDALSSQAVAKLQKQDQNNVPQSSNESSASEDILWVDRYRPHKFTELMGNERVA 268
Query: 366 KQLHTWLAHWNEKFL----------DTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAK 415
+ WL W+ D + + + EK +LSG PG+GKTT A
Sbjct: 269 RDTMAWLKQWDWCVFGRKRGRKRPRDGNENFDKEDEYHRPQEKFLLLSGPPGLGKTTLAH 328
Query: 416 LVCQMLGFQAIEVNASDSRGK--ADAKISKGI-GGSNANSIKELVSNEALSANMDRSKHP 472
+V G++ +E+NASD+R D +I + GS S K +
Sbjct: 329 VVANQAGYEVMEINASDARSGQIVDDRIRPALEAGSAVGSAKPV---------------- 372
Query: 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISK----------------------IPIICIC 510
+LI+DE+DG + + +++++ PIICIC
Sbjct: 373 --LLIIDEIDGATGAGESSNTFIHKLVQLTQDKWRKKQRSGQKRDHDVKRPILRPIICIC 430
Query: 511 NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570
ND + L L + +RF +P AKRL +I EGL+ + AL L D+R
Sbjct: 431 NDVNASSLAKLRPHALQIRFTRPSDVHTAKRLREICEIEGLKADSRALSTLVGLAKCDLR 490
Query: 571 MAINQLQYM 579
+N LQ++
Sbjct: 491 SCLNTLQFV 499
>gi|432331675|ref|YP_007249818.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
gi|432138384|gb|AGB03311.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
Length = 471
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 143/302 (47%), Gaps = 48/302 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP ++VGN+ V Q+ W W K + +L
Sbjct: 1 MDWAEKYRPAHLADLVGNKTPVMQIAEWAKTWTRK------------------SRPLLLY 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKT+AA + + ++ +E+NASD R A + G G A+
Sbjct: 43 GKPGIGKTSAAYALANDMNWEVVELNASDQRTAAVIERIAGAGSVTAS------------ 90
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRY--SQKLKS 520
+ + ++++DE D + DRGG ++ I+ ++ P+I I ND Y S ++++
Sbjct: 91 ----LTGATRKLIVLDEADNLQGNADRGGAKAILECIRQAQQPMILIANDLYGISPEIRA 146
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
C ++F+ + I RL + +AE + ++ AL+ +A+ GDIR A+N L +
Sbjct: 147 ---RCEPVQFKAVPARSIVPRLRYLCSAEKISCSDAALQSIAESAGGDIRSAVNMLYASA 203
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
L + DD ++ +S KDE +S F+ + LF GK R DE + LS D +
Sbjct: 204 LGRDSL--DD--GQVHTSQKDERVSIFSLITALF----GKTRDDELMRLSYDVDDTPDTI 255
Query: 641 IQ 642
+Q
Sbjct: 256 VQ 257
>gi|353243300|emb|CCA74858.1| related to CTF18-Chromosome Transmission Fidelity factor
[Piriformospora indica DSM 11827]
Length = 836
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 158/343 (46%), Gaps = 54/343 (15%)
Query: 274 FDMIRA---SKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVAS 330
FD +++ S+P A+++ + ++ K+ L K++ Q ++ +S + S
Sbjct: 136 FDHVQSVSISEPKDAISKLVTVQT-HKIMEQLAKETAQRLDLES-----------EPTTS 183
Query: 331 PAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKK 390
+K K ++++ WT+KYRP+ +++G++++ + W+ W+ K G++
Sbjct: 184 TSKIKSLEVEET--LWTDKYRPRHFTDLLGDERVHRDTMLWVKEWDACVFPE--KMVGRR 239
Query: 391 QNDA-SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSN 449
+ A E+ +LSG PG+GKTT A +V + G+ +E+NASD+R A
Sbjct: 240 KKQAKEGEEILLLSGPPGLGKTTLAHVVARQAGYAVMEINASDARSGA------------ 287
Query: 450 ANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG--DRGGIADLIASIKISKI--- 504
+I E + L A ++++DE+DG + G + G + S+ I K
Sbjct: 288 --TIDERI-RPVLEAGTKVGGSKPVLVVIDEIDGATGGGDNTIGFVQRLLSMTIDKPKKT 344
Query: 505 --------------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEG 550
PIICICND Y+ L L +RF+ P + KRL +I E
Sbjct: 345 RSRNQKDTRRPLLRPIICICNDLYAASLAKLRPVSRIVRFQPPAPVHLVKRLKEICEMED 404
Query: 551 LEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQ 593
L + +L L GD+R +N LQ + S I +R+
Sbjct: 405 LRADSRSLTALVGASQGDMRGCLNTLQLLKAKHSEITEPIVRR 447
>gi|257387805|ref|YP_003177578.1| replication factor C large subunit [Halomicrobium mukohataei DSM
12286]
gi|257170112|gb|ACV47871.1| AAA ATPase central domain protein [Halomicrobium mukohataei DSM
12286]
Length = 497
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 134/296 (45%), Gaps = 38/296 (12%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE+YRP T E+ GN + L W W + +A IL G+
Sbjct: 4 WTERYRPTTLAEVRGNDKARDALREWAESWEDH------------------REAVILHGA 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + + + IE+NASDSR K + I+++ A S
Sbjct: 46 PGIGKTSAAHALANDMEWPTIELNASDSRTK--------------DVIEKVAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + +++MDE D + DRGG + + +K + P+I I N+ Y L N
Sbjct: 92 LTAGGAGRRLVVMDEADNIHGNADRGGARAITSLVKEANQPMILIANEFYEMS-NGLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C D+ FR K+ I L + E + ++ AL E+A+ +GD+R AI LQ ++
Sbjct: 151 CDDIEFRDVGKRSIVPVLRDVLRQEEIAFDDEALTEIAEMNDGDLRGAIKDLQALAEGRD 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
+ DD+ ++ +D F +D L G + ++ D+ + DL+ +
Sbjct: 211 HLAADDV----VTGERDTTEGIFDYLDLLLKEAGPQEALEASYDVDETPDDLINWI 262
>gi|159041491|ref|YP_001540743.1| replication factor C large subunit [Caldivirga maquilingensis
IC-167]
gi|157920326|gb|ABW01753.1| AAA ATPase central domain protein [Caldivirga maquilingensis
IC-167]
Length = 418
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 167/348 (47%), Gaps = 48/348 (13%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP++ +IV +++ K + W++ W +GK++ +A +LS
Sbjct: 6 LPWFEKYRPRSLKDIVNQEEVKKTMEDWISKW----------LSGKEK------RAILLS 49
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT + G + E+NASD R A+ I+E + +AL+
Sbjct: 50 GPPGTGKTTMVHALAYDYGLELYEMNASDVR--------------TASRIRETI-GKALT 94
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
K VL DEVDG++ D+GGI +++ +K +K+PI ND + KL+ L
Sbjct: 95 QGSLFGFRGKLVL-FDEVDGINVRADQGGIYEIVDIVKEAKVPIAMTANDPWDPKLRPLR 153
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
+ C ++ + + ++I + L +I NAE ++ E AL +A+ GD+R AIN LQ ++ +
Sbjct: 154 DICVVVQVKPLKNRDIIEMLRRICNAEKVKCEEDALRLIAESSMGDMRSAINDLQTVAET 213
Query: 583 LSVIKYDDIRQRL-LSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLI 641
V R+R+ L S++ F VD + N S + +P
Sbjct: 214 GPV-----TRERVSLLSSRAHQYDMFRMVDMVLKANTVA---------SATGVTRLPSFD 259
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
E+++ + +A L ++ A +++S D+ + Q+W+L
Sbjct: 260 WESFLLWLVENAAVAYSSSLVAMSDAYDNLSRADVLRGIMNNRQEWEL 307
>gi|433638675|ref|YP_007284435.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
gi|433290479|gb|AGB16302.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
Length = 507
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 125/271 (46%), Gaps = 40/271 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T + + GN + L W +W++ KAAI+ GS
Sbjct: 4 WTEKYRPDTLSAVRGNDKARDALREWAQNWDDH------------------RKAAIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL-SA 464
PG+GKT+AA + + + +E+NASD RGK I + V+ EA S
Sbjct: 46 PGVGKTSAAHALAADMNWPVMELNASDHRGK---------------DIIDRVAGEASKSG 90
Query: 465 NMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
+ + ++I+DE D D GG + +K + PI+ + N+ Y SL N
Sbjct: 91 TLTGGTSGRRLVILDEADNFHGNADYGGSRAVTDVVKSASQPIVLVANEFYDMS-NSLRN 149
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
C + FR + I L I EG+E AL +A+ +GD+R A+N LQ ++ S
Sbjct: 150 ACETIEFRDVSTRSIVPVLRDICRKEGIEFEADALRAIAENTSGDLRSAVNDLQAIAEST 209
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ +D+ ++ ++D F +D+L
Sbjct: 210 ERLTEEDV----VTGSRDTTEGIFDYLDELI 236
>gi|298675294|ref|YP_003727044.1| AAA ATPase [Methanohalobium evestigatum Z-7303]
gi|298288282|gb|ADI74248.1| AAA ATPase central domain protein [Methanohalobium evestigatum
Z-7303]
Length = 499
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 138/272 (50%), Gaps = 37/272 (13%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP T +++VGN++ ++ L W W LD + ++A IL
Sbjct: 5 IEWAEKYRPSTLSDVVGNKKALESLKKWAEEW----LD-----------NVPEKRAVILH 49
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G G+GKT+ A + G++ IE+NASD R A++ I GS A+ L +
Sbjct: 50 GRAGIGKTSTAYALANDFGWEVIELNASDQRT---AEVINKIAGS-ASKTGSLFGSGG-- 103
Query: 464 ANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
K ++++DE D + DRGG + +IK + P++ I ND Y S+
Sbjct: 104 ---------KRLIVLDEADNLHGTNDRGGARAISETIKKTDQPVVLIANDVYGVA-SSIR 153
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N C +++F + + IA L +I E + ++ ++E+LA +GD+R AIN LQ ++S
Sbjct: 154 NQCLEIKFNNVQTRSIAASLKKICKKEDINCDDESIEKLAQDSDGDVRSAINDLQ-AAVS 212
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ + +DI +S +D + S F + K+F
Sbjct: 213 GNELHIEDI----ATSQRDTEESIFKVLTKIF 240
>gi|444323297|ref|XP_004182289.1| hypothetical protein TBLA_0I01110 [Tetrapisispora blattae CBS 6284]
gi|387515336|emb|CCH62770.1| hypothetical protein TBLA_0I01110 [Tetrapisispora blattae CBS 6284]
Length = 676
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 117/249 (46%), Gaps = 35/249 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EK+RP ++VGN++ ++L TWL W+ + + +K ++ G
Sbjct: 71 WVEKWRPHRFIDLVGNEKFNRRLLTWLRQWSSVVFQSKDTEPSIDFLNRPVKKILLIHGP 130
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+ A ++ + LG+ +E+NAS+ R K++ ++N N
Sbjct: 131 PGIGKTSIAHIMAKQLGYSIVEINASNERNTQQLKLN--------------LTNSLFHDN 176
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI----------------PIICI 509
+ + T LI DE+DG A D G I L+ + K PI+ I
Sbjct: 177 LFSNP---TCLIADEIDG--AQDSGLIKLLLEILHSDKRATLTRKNSKKNKLLKRPIVAI 231
Query: 510 CNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDI 569
CN+ YS L+ L +C + RKP I +RL IA E L ++ AL+++ GDI
Sbjct: 232 CNNIYSHSLERLKPFCEIIPLRKPLDSAIIERLQLIAQKEHLSLSLQALKDIIISSQGDI 291
Query: 570 RMAINQLQY 578
R IN LQ+
Sbjct: 292 RNCINNLQF 300
>gi|288560385|ref|YP_003423871.1| replication factor C large subunit RfcL [Methanobrevibacter
ruminantium M1]
gi|288543095|gb|ADC46979.1| replication factor C large subunit RfcL [Methanobrevibacter
ruminantium M1]
Length = 530
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 117/236 (49%), Gaps = 35/236 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W +KYRPKT E+VGN + K + WL W D + +K +L
Sbjct: 1 MLWVDKYRPKTFKEVVGNNKQKKVIEDWLQSW----------------QDGNPQKPLLLI 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G G GKTT A ++ + IE+NASD R + D +S +I E + ++L
Sbjct: 45 GPAGTGKTTIAHIIANEFS-EYIELNASDKRSQ-DVLMS---------TIGESATTKSLF 93
Query: 464 ANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
K ++IMDEVDG+ DRGG + L IK SK PI+ + ND YS KL ++
Sbjct: 94 G------ENKKLIIMDEVDGIHGTNDRGGTSALNKIIKNSKQPIVMMANDFYSNKLTTIK 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIA-NAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
++ K R I K L + EG+EV+ L +L+ R +GD+R AIN LQ
Sbjct: 148 KNAQVIKMDKIRAPTINKFLRDVVLKNEGIEVDPDVLMKLSKRSSGDLRSAINTLQ 203
>gi|448491336|ref|ZP_21608277.1| replication factor C large subunit [Halorubrum californiensis DSM
19288]
gi|445693107|gb|ELZ45269.1| replication factor C large subunit [Halorubrum californiensis DSM
19288]
Length = 506
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 157/350 (44%), Gaps = 39/350 (11%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + W W++ +A +L GS
Sbjct: 4 WTEKYRPSTLSEVRGNDKARDAFAEWARSWDDH------------------REAVVLHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G++ +E+NASD R AD I + G + N+ + +A
Sbjct: 46 PGVGKTSAAHALANDMGWETVELNASDQR-TADV-IERFAGRAARNATLGGSAAGGGAAG 103
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
D + + ++I+DE D + DRGG + + +K S PI+ I ND Y + L N
Sbjct: 104 GDTAS--RQLVILDEADNIHGNYDRGGASAITELVKESGQPIVLIANDYYDMS-RGLRNA 160
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
++ FR + I L + EG+E AL+ +A+ GD+R AIN LQ +
Sbjct: 161 TQEIEFRDVSARSIVPVLRDVCRKEGIEFESDALQRIAEGNRGDLRGAINDLQAATQGRD 220
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I D+ ++ +D+ + F +D + + + + + DL+ L
Sbjct: 221 SITVGDV----VTGDRDKALGLFPFLDAVLKEESAEEALQSAYAVDETPDDLMRWLENNV 276
Query: 645 YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
Y P+ A RA + +++ D++ ++R Q + + ++
Sbjct: 277 LDVYEPAEA-----------VRAYDFLANADVWLGRVRATQNYSYWRYAT 315
>gi|84489226|ref|YP_447458.1| replication factor C large subunit [Methanosphaera stadtmanae DSM
3091]
gi|110287810|sp|Q2NH88.1|RFCL_METST RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|84372545|gb|ABC56815.1| RfcL [Methanosphaera stadtmanae DSM 3091]
Length = 534
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 151/342 (44%), Gaps = 63/342 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKY PK +++GN + Q+ W W++ +K +L
Sbjct: 1 MKWVEKYAPKKLGDVLGNAKAKAQIEVWANKWSK----------------GVPQKPLLLM 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A LV + + IEVNASD R + IK + A +
Sbjct: 45 GPPGIGKTTIAHLVGKEYFSETIEVNASDKRS--------------YDIIKSSIGEAAQT 90
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
++ S + +LIMDEVDG+S D GG + +IK SK PII + ND YS++L S+
Sbjct: 91 RSLFHSGYK--LLIMDEVDGISGRDDSGGARAVNETIKNSKQPIILMANDAYSKRLTSIK 148
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM--- 579
C ++F K I +L +I E +E + AL L+ NGD+R AI L+ +
Sbjct: 149 PKCQGIKFTKVHTNSINAQLKRICAREDIEYDSEALYTLSKESNGDLRSAITSLEAIVDN 208
Query: 580 -----SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDP 634
SLSVI D Q + T V L N + R++ + P
Sbjct: 209 DKKITKDSLSVIAKKDGEQNIFD----------TVVAVLKSKNPEHVAEAMRVN---TQP 255
Query: 635 DLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDI 676
+ LI EN P E +R + I +A E IS D+
Sbjct: 256 PFLIELIAENI----PR-----EYERTNEIVKAYEMISLADV 288
>gi|449547049|gb|EMD38017.1| hypothetical protein CERSUDRAFT_49624 [Ceriporiopsis subvermispora
B]
Length = 777
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 120/273 (43%), Gaps = 46/273 (16%)
Query: 337 QNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDAS- 395
Q Q W ++YRPK +++G+ ++ +++ W+ W+ +K GKK+ A
Sbjct: 126 QTDQSDVSLWVDRYRPKCYADLLGDDRVHREVLAWVKEWDHCVFGR-SKGKGKKRARAED 184
Query: 396 ----------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI 445
EK +LSG PG+GKTT A +V Q G+ E+NASD+R
Sbjct: 185 DEVVDELRRPKEKILLLSGPPGLGKTTLAHVVAQHAGYNVFEINASDAR----------- 233
Query: 446 GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD---RGGIADLI------ 496
+A +++ + S + S P V+I DE+DG + G G I LI
Sbjct: 234 ---SAQVVEDRIRPALESGSAVGSSKPNLVVI-DEIDGATGGSDHTSGFIQKLINLTFER 289
Query: 497 ----------ASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIA 546
S + PIICICND Y+ L L +RF +P + +RL I
Sbjct: 290 PQKKGRKKDSKSSRPLLRPIICICNDLYASSLAKLRPIARIVRFSRPSDLHLVRRLRDIC 349
Query: 547 NAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
EGL AL L GD+R +N LQ +
Sbjct: 350 AFEGLRAESRALTALVGMAQGDLRGCLNMLQLL 382
>gi|448499266|ref|ZP_21611280.1| replication factor C large subunit [Halorubrum coriense DSM 10284]
gi|445697603|gb|ELZ49665.1| replication factor C large subunit [Halorubrum coriense DSM 10284]
Length = 500
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 161/351 (45%), Gaps = 41/351 (11%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + W W++ +A +L GS
Sbjct: 4 WTEKYRPSTLSEVRGNDKARDAFAEWARSWDDH------------------REAVVLHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G++ +E+NASD R AD I + G + N+ + +A
Sbjct: 46 PGVGKTSAAHALANDMGWETVELNASDQR-TADV-IERFAGRAARNATLGGSAAGGGAAG 103
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
D + + ++++DE D + DRGG + + +K S PI+ I ND Y + L N
Sbjct: 104 GDTAS--RQLVVLDEADNIHGNYDRGGASAITKLVKESGQPIVLIANDYYDMS-RGLRNA 160
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
++ FR + I L + EG+E AL+ +A+ GD+R A+N LQ +
Sbjct: 161 TQEIEFRDVSARSIVPVLRDVCRKEGIEFESDALQRIAEGNRGDLRGAVNDLQAATQGRD 220
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I D+ ++ +D+ + F +D + + + + + PD + I+ N
Sbjct: 221 SITVADV----VTGDRDKALGLFPFLDAVLKEESAEEALQSAYAVDET-PDDLTAWIENN 275
Query: 645 YIN-YRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
++ Y P+ A RA + +++ D++ ++R Q + + ++
Sbjct: 276 VLDVYEPAEA-----------VRAYDFLANADVWLGRVRATQNYSYWRYAT 315
>gi|312136660|ref|YP_004003997.1| ATPase AAA [Methanothermus fervidus DSM 2088]
gi|311224379|gb|ADP77235.1| AAA ATPase [Methanothermus fervidus DSM 2088]
Length = 405
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 34/235 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRPK +E +GN+++V+++ W+ W E GK Q +L
Sbjct: 1 MKWVEKYRPKDFDEFIGNRKVVEEVRKWIRDWKE----------GKPQ------PPLLLV 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G G+GKT A+++ +I +NASD R + SI + E+
Sbjct: 45 GPTGVGKTALAQIISNKFS-DSISLNASDKR---------------SYSILMRIVGESSK 88
Query: 464 ANMDRSKHPKTVLIMDEVDGM-SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ KH + V+++DEVD + S DRGG + ++ I ISK PI+ ND Y++ L +
Sbjct: 89 SGSLFGKHER-VIVLDEVDNIHSIEDRGGASAILKIIDISKHPIVLTANDIYTRHLARIR 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
C L+ R+P + I L +I E ++ N L E+A + +GD+R AIN L+
Sbjct: 148 KKCKVLKLRRPPARSIVALLGRICRKEKIKFNRSVLMEIAKKASGDVRQAINMLE 202
>gi|294495084|ref|YP_003541577.1| replication factor C large subunit [Methanohalophilus mahii DSM
5219]
gi|292666083|gb|ADE35932.1| replication factor C large subunit [Methanohalophilus mahii DSM
5219]
Length = 489
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 132/270 (48%), Gaps = 37/270 (13%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP ++VGN + ++ L W W ++ +KAAILSG
Sbjct: 7 WAEKYRPAKLADVVGNNKPLQALRDWEEEW---------------EHGVPEKKAAILSGP 51
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
G+GKT+AA + +G++ IE+NASD R A I + + GS A+ + L +
Sbjct: 52 AGVGKTSAAHALGNEMGWEIIEMNASDQRT---AGIIEKVAGS-ASRMSTLTGIQ----- 102
Query: 466 MDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
K ++I+DE D M + DRGG + IK S PII I ND Y+ +L ++
Sbjct: 103 -------KRLIILDEADNMHGSADRGGTRAITNVIKKSNQPIILIANDLYALS-STLRSH 154
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C +++F ++ I L +I EG+ LE++A+ GD+R AI LQ +
Sbjct: 155 CVNIKFNPIPQRSILPALKKICKMEGIMCGTGVLEKIAENTGGDLRSAIKDLQATATDKK 214
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
I+ D+ ++ +D S F + K+F
Sbjct: 215 EIEVADV----TTAERDTKESIFKVLTKVF 240
>gi|91774163|ref|YP_566855.1| replication factor C large subunit [Methanococcoides burtonii DSM
6242]
gi|121686603|sp|Q12TX1.1|RFCL_METBU RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|91713178|gb|ABE53105.1| Replication factor C large subunit [Methanococcoides burtonii DSM
6242]
Length = 497
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 181/396 (45%), Gaps = 43/396 (10%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAIL 402
S+ W EKYRP++ +IVGN++ V + W W +GT ++A IL
Sbjct: 4 SIEWVEKYRPQSLTDIVGNKKSVVDMREWAQSWL-----SGTPE----------KRAIIL 48
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL 462
G G+GKT+AA + + L ++ IE+NASD R A + + + GS A+ + L A
Sbjct: 49 HGPAGVGKTSAAHALARDLDWETIELNASDQR---TAGVIERVAGS-ASKMSSLTGTTA- 103
Query: 463 SANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
K ++I+DE D + DRGG + IK + PI+ I ND Y S+
Sbjct: 104 ----------KRLIILDEADNIHGNADRGGARAIGGIIKNTDQPIVLIANDLYGLT-PSV 152
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
+ C +L+F + + + + +I E + LE+LA+ GD+R AI LQ ++
Sbjct: 153 RSLCIELKFNSVQGRSMIPAMKRICVEEKIMCGVGVLEKLAESAGGDLRSAIKDLQAVAT 212
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLI 641
I +DI +S +D S F + K+F K ++ L + +L+ I
Sbjct: 213 GRDEIHIEDI----ATSERDTKESIFKVLGKIFKSTDPKKALEATYGLDETPENLIH-WI 267
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQ-SSSLASCII 700
EN P G +E + LI E ++ D + ++R+ Q ++L + + +L +C
Sbjct: 268 DENL----PLQYGTEEGTQEDLIT-GYEYLAKADRYLGRVRKRQSYRLWRYAGALMTCGT 322
Query: 701 PAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNL 736
+ H R + +F R G L M N+
Sbjct: 323 VVSKTHVGRGFTKYQPPSFWRKMGQLRAKRDMRDNI 358
>gi|448453326|ref|ZP_21593769.1| replication factor C large subunit [Halorubrum litoreum JCM 13561]
gi|445807646|gb|EMA57729.1| replication factor C large subunit [Halorubrum litoreum JCM 13561]
Length = 503
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 161/351 (45%), Gaps = 41/351 (11%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + W W++ +A +L GS
Sbjct: 4 WTEKYRPSTLSEVRGNDKARDAFAEWARSWDDH------------------REAVVLHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G++ +E+NASD R AD I + G + N+ + +A
Sbjct: 46 PGVGKTSAAHALANDMGWETVELNASDQR-TADV-IERFAGRAARNATLGGSAAGGGAAG 103
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
D + + ++I+DE D + DRGG + + +K S PI+ I ND Y + L N
Sbjct: 104 GDTAS--RQLVILDEADNIHGNYDRGGASAITKLVKESGQPIVLIANDFYDMS-RGLRNA 160
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
++ FR + I L + EG+E AL+ +A+ GD+R AIN LQ +
Sbjct: 161 TQEIEFRDVSARSIVPVLRDVCRKEGIEFESDALQRIAEGNRGDLRGAINDLQAATQGRD 220
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I +D+ ++ +D+ + F +D + + + + + DL I+ N
Sbjct: 221 SITVEDV----VTGDRDKALGLFPFLDAVLKEESAEEALQSAYAVDETPEDLAR-WIENN 275
Query: 645 YIN-YRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
++ Y P+ A RA + +++ D++ ++R Q + + ++
Sbjct: 276 LLDVYEPAEA-----------VRAYDFLANADVWLGRVRATQNYSYWRYAT 315
>gi|401624313|gb|EJS42375.1| ctf18p [Saccharomyces arboricola H-6]
Length = 739
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 140/307 (45%), Gaps = 55/307 (17%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKR--NGKKQNDASAE------ 397
W EK+RPK ++VGN+++ +++ WL W + + K+QN+ +
Sbjct: 116 WVEKWRPKKFLDLVGNEKINRRMLGWLRQWAPAVFKEQLPKLPSEKEQNEIEPDPLNRPQ 175
Query: 398 -KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
+ +L G PG+GKT+ A ++ + GF E+NASD R G I +
Sbjct: 176 KRILLLHGPPGIGKTSVAHVIVKQSGFSVSEMNASDERA----------GPMVKEKIHNI 225
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDG-MSAGDRGGIADLIA--SIKISKI--------- 504
+ N N LI DE+DG + +G + D+I S +K+
Sbjct: 226 LFNHTFDTN-------PVCLIADEIDGSVESGFIRILVDIIQNDSKATNKLLYGQPNKKK 278
Query: 505 -----------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEV 553
PIICICN+ Y+ L+ L +C + ++P + +RL I + E ++V
Sbjct: 279 DKKKTSELLIRPIICICNNLYAPALEKLKPFCEIVAVKRPSDSTLQERLNMICHKENMDV 338
Query: 554 NEIALEELADRVNGDIRMAINQLQYMSLSL------SVIKYDDIRQRLLSSAKDEDISPF 607
+ EL D GD+R IN LQ+++ ++ S+ K + + SS KD +S F
Sbjct: 339 PIKTINELIDLAQGDVRNCINNLQFLASNIDQKNADSLDKSNFNKTTWASSNKDSPVSWF 398
Query: 608 TAVDKLF 614
V++LF
Sbjct: 399 KIVNQLF 405
>gi|389749180|gb|EIM90357.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 766
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 134/300 (44%), Gaps = 46/300 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE-KFLDTGTKRNGKKQN---------DAS 395
W +KYRP+ +++G+++L +++ W+ W+ F K+ +++N
Sbjct: 91 WVDKYRPQKYTDLIGDERLHREVLGWVKEWDYCVFGKKKGKKRAREENVDGKPPDQYHRP 150
Query: 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKE 455
EK +LSG PG+GKTT A +V + G+ E+NASD+R +A+ ++E
Sbjct: 151 YEKILLLSGPPGLGKTTLAHVVARQAGYNVFEINASDAR--------------SASVVEE 196
Query: 456 LVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRG-GIADLIASIKISKI--------- 504
+ S S P V+I DE+DG + G D G G + + + K
Sbjct: 197 RIRPAIESGAAVGSSRPNLVVI-DEIDGATGGGDNGAGFIYKLTQMALEKPSNQRRKKKE 255
Query: 505 ---------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNE 555
PIICICND Y+ L L +RF +P + KRL +I E L+
Sbjct: 256 ANGQRPLLRPIICICNDLYASSLAKLRPLARIVRFSRPADLHMVKRLREICEEESLKAES 315
Query: 556 IALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615
AL L GD R +N LQ + + + I ++ S K+ D S ++ LF
Sbjct: 316 RALTTLVGVCMGDFRGCLNTLQLLKARNQTVT-EPIVRKATSGMKEADSSFNVVLNSLFA 374
>gi|390961473|ref|YP_006425307.1| replication factor C large subunit [Thermococcus sp. CL1]
gi|390519781|gb|AFL95513.1| replication factor C large subunit [Thermococcus sp. CL1]
Length = 498
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 162/351 (46%), Gaps = 55/351 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP+ +EIV ++ ++Q+ W+ W + +KA IL+G
Sbjct: 6 WVEKYRPRKLSEIVNQEKAIEQVRAWVEAW--------------LHGNPPKKKALILAGP 51
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKTT + GF+ IE+NASD R KI + + +
Sbjct: 52 PGVGKTTTVYALANEYGFEVIELNASDER--TFEKIERYVQAAY---------------T 94
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
+D + ++ +DE D + IA LI ++ PII N Y + + + N
Sbjct: 95 LDILGKRRKLIFLDEADNIEPSGAREIAKLIDR---ARNPIIMSAN-HYWEVPREIRNKA 150
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV 585
+ +++ +++I K L++I EG V + L E+A R +GD+R AIN LQ + +
Sbjct: 151 QIVEYKRLTQRDIIKALIRILKREGKTVPKEILYEIAKRASGDLRAAINDLQTVVTGGT- 209
Query: 586 IKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN- 644
+D ++ L + +D + S F A+ ++F + K + + M +L+ I EN
Sbjct: 210 ---EDAKEVL--AYRDVEKSVFQALAQIFATDNAKKAKMATLGVDMFPHELLQ-WIDENV 263
Query: 645 -YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
Y+ YRP IARA E++S DI+ + +R + L + ++
Sbjct: 264 PYVYYRPED-----------IARAYEALSRADIYLGRAQRTGNYSLWKYAT 303
>gi|337285092|ref|YP_004624566.1| replication factor C large subunit [Pyrococcus yayanosii CH1]
gi|334901026|gb|AEH25294.1| replication factor C large subunit [Pyrococcus yayanosii CH1]
Length = 482
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 162/340 (47%), Gaps = 64/340 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP+ +EI+ +Q ++++ W+ W +G+ + +KA +L+
Sbjct: 2 LPWVEKYRPRRLSEIINQEQALERVRAWIEAW----------LHGRPK-----KKALLLA 46
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT + F+ IE+NASD R KI + + +
Sbjct: 47 GPPGSGKTTTVYALAHEYRFEVIELNASDER--TYEKIERYVQAAY-------------- 90
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
MD + ++ +DE D + IA LI +K PII N +Y + + +
Sbjct: 91 -TMDILGKRRKLIFLDEADNIEPSGAKEIAKLIDK---AKNPIIMAAN-KYWEVPREIRE 145
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
+ +++ +++I K L++I AE LE+ + L E+A R +GD+R AIN LQ ++
Sbjct: 146 KAELVEYKRLTQRDIVKALLRILKAERLEIPKDLLYEIAKRASGDLRAAINDLQ----TV 201
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVP----L 639
++ Y+D + L + +D + + F A+ +FG + K + ++M + D++P L
Sbjct: 202 AIGDYEDAKAIL--AYRDVEKTVFQALGLVFGSDNAK-----KAKMAMWNLDMMPDEFLL 254
Query: 640 LIQEN--YINYRPSSAGRDEVKRLSLIARAAESISDGDIF 677
+ EN YI R +ARA ++IS DI+
Sbjct: 255 WVDENIPYIYLRSEE-----------VARAYDAISRADIY 283
>gi|336367231|gb|EGN95576.1| hypothetical protein SERLA73DRAFT_60018 [Serpula lacrymans var.
lacrymans S7.3]
Length = 753
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 142/321 (44%), Gaps = 44/321 (13%)
Query: 323 ERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDT 382
E++ + A ++ Q W ++YRP E++GN+++ ++ W+ W+
Sbjct: 95 EKLSISCAGAPQEVSRAPQDDTLWVDRYRPLRFTELLGNERVARETMEWVKQWDWCVFGR 154
Query: 383 GTKRNGKKQNDASA----------EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432
+ ++ D + EK +LSG PG+GKTT A ++ Q G++ +E+NASD
Sbjct: 155 RKSKKRPREGDENHNPDDEYHRPHEKLFLLSGPPGLGKTTLAHVIAQQAGYEVMEINASD 214
Query: 433 SRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS-AGDR-G 490
+R G+ ++E + S + S P ++I+DE+DG + AGD
Sbjct: 215 ARS--------GL------VVEERIQPALESGSAIGSSKP-VLIIIDEIDGATGAGDNTS 259
Query: 491 GIADLIASIKISKI----------------PIICICNDRYSQKLKSLVNYCSDLRFRKPR 534
G + S+ PIICICND ++ L L + +R +P
Sbjct: 260 GFVQKLVSLTYDAPKKGKGKQKKDKRPLLRPIICICNDLHAPALAKLRPHARQVRLTRPA 319
Query: 535 KQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQR 594
I KRL +I E L+ + AL L GD+R +N LQ++ + IR R
Sbjct: 320 DIHIVKRLREICQFEDLKADSRALTTLVGVARGDLRGCLNTLQFIKSKSEEVTEPLIR-R 378
Query: 595 LLSSAKDEDISPFTAVDKLFG 615
K+ D + + ++ LF
Sbjct: 379 ATVGMKEADTTVTSVLNDLFA 399
>gi|257471690|pdb|2K7F|A Chain A, Haddock Calculated Model Of The Complex Between The Brct
Region Of Rfc P140 And Dsdna
gi|259090084|pdb|2K6G|A Chain A, Solution Structure Of The Dna Binding Brct Domain From The
Large Subunit Of Human Replication Factor C
Length = 109
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 73/99 (73%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ ++ R+ P G KE+P+GA +CL GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+V
Sbjct: 8 YRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNV 67
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR 278
SKKTNYL+ D +KS KA LGT + EDGL ++IR
Sbjct: 68 SKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIR 106
>gi|349602900|gb|AEP98895.1| Replication factor C subunit 1-like protein, partial [Equus
caballus]
Length = 555
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 85/133 (63%), Gaps = 2/133 (1%)
Query: 147 TESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLG 206
T++P K+ + + S +P R + ++ R+ P G KE+P+GA +CL
Sbjct: 277 TKTPKKT--KSSPAKKESISPEDSEKRRTNYQAYRSYLNREGPKALGSKEIPKGAENCLE 334
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT
Sbjct: 335 GLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTK 394
Query: 267 FLTEDGLFDMIRA 279
+ EDGL ++IR
Sbjct: 395 IIDEDGLLNLIRT 407
>gi|336379950|gb|EGO21104.1| hypothetical protein SERLADRAFT_441488 [Serpula lacrymans var.
lacrymans S7.9]
Length = 904
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 135/303 (44%), Gaps = 44/303 (14%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASA---- 396
Q W ++YRP E++GN+++ ++ W+ W+ + ++ D +
Sbjct: 243 QDDTLWVDRYRPLRFTELLGNERVARETMEWVKQWDWCVFGRRKSKKRPREGDENHNPDD 302
Query: 397 ------EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNA 450
EK +LSG PG+GKTT A ++ Q G++ +E+NASD+R G+
Sbjct: 303 EYHRPHEKLFLLSGPPGLGKTTLAHVIAQQAGYEVMEINASDARS--------GL----- 349
Query: 451 NSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS-AGDR-GGIADLIASIKISKI---- 504
++E + S + S P ++I+DE+DG + AGD G + S+
Sbjct: 350 -VVEERIQPALESGSAIGSSKP-VLIIIDEIDGATGAGDNTSGFVQKLVSLTYDAPKKGK 407
Query: 505 ------------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLE 552
PIICICND ++ L L + +R +P I KRL +I E L+
Sbjct: 408 GKQKKDKRPLLRPIICICNDLHAPALAKLRPHARQVRLTRPADIHIVKRLREICQFEDLK 467
Query: 553 VNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDK 612
+ AL L GD+R +N LQ++ + IR R K+ D + + ++
Sbjct: 468 ADSRALTTLVGVARGDLRGCLNTLQFIKSKSEEVTEPLIR-RATVGMKEADTTVTSVLND 526
Query: 613 LFG 615
LF
Sbjct: 527 LFA 529
>gi|332796205|ref|YP_004457705.1| AAA ATPase [Acidianus hospitalis W1]
gi|332693940|gb|AEE93407.1| AAA ATPase central domain protein [Acidianus hospitalis W1]
Length = 450
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 148/304 (48%), Gaps = 37/304 (12%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQ-LHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
+L W KYRPK+ N+ V NQ VKQ L W+ W +GK +N KA +
Sbjct: 2 TLPWIIKYRPKSLND-VENQDDVKQELKRWIESW----------LSGKPEN-----KALL 45
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
L G PG GKTT A+ + G + +E+NASDSR N +IK + A
Sbjct: 46 LYGPPGTGKTTLAQALAHDYGLELLEMNASDSR--------------NLEAIKNIAQRAA 91
Query: 462 LSANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
+S ++ +K ++ +DEVDG++A D G I + ++ ++ P++ ND + L+
Sbjct: 92 VSGSLFGTKG--KLIFLDEVDGINARQDMGAIPAIAELVQKTRYPVLLAANDPWDPSLRE 149
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
L N + +K K + K L +I +E L+ ++ AL+E+ + +GD R AIN L+ +
Sbjct: 150 LRNLAKLVEVKKLGKYALRKILGKICTSEKLQCDDDALDEIIEISDGDARYAINLLEATA 209
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
+ + +++ + K+ ++ PF V +F + + + S D DL+
Sbjct: 210 EGFKKVTVESVKE--FARRKESELDPFETVRGVF-WAKYAWQAKNAVTSSQVDYDLLMKW 266
Query: 641 IQEN 644
EN
Sbjct: 267 FSEN 270
>gi|313125638|ref|YP_004035908.1| replication factor c large subunit [Halogeometricum borinquense DSM
11551]
gi|448285477|ref|ZP_21476720.1| replication factor C large subunit [Halogeometricum borinquense DSM
11551]
gi|312292003|gb|ADQ66463.1| replication factor C large subunit [Halogeometricum borinquense DSM
11551]
gi|445576733|gb|ELY31183.1| replication factor C large subunit [Halogeometricum borinquense DSM
11551]
Length = 487
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 131/272 (48%), Gaps = 30/272 (11%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T E+ GN + L W W++ +A +L
Sbjct: 2 VDWTEKYRPSTLAEVRGNNKARDALAEWGKTWDDH------------------REAVVLH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G+PG+GKT+AA + +G++ +E+NASD R AD I + G + N+ L A
Sbjct: 44 GAPGVGKTSAAHALANDMGWETVELNASDQR-TADV-IERFAGRAAMNTT--LAGASAGD 99
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
AN +R + ++IMDE D + DRGG + +K S PI+ I N+ Y L
Sbjct: 100 ANGER--EGRQLVIMDEADNIHGNYDRGGAGAITRLVKKSNQPIVLIANEYYDMS-SGLR 156
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
+ ++ FR + I L I EG+E + AL+ +A+ +GD+R A+ LQ +
Sbjct: 157 SATREIEFRDVSARSIVPVLRDILRKEGIEFDSDALDRIAETNSGDLRSAVKDLQAAADG 216
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ +D+ ++ ++D+ I F +D +
Sbjct: 217 ADRLTVEDV----VTGSRDKAIGLFEYIDSVL 244
>gi|406695748|gb|EKC99049.1| hypothetical protein A1Q2_06650 [Trichosporon asahii var. asahii
CBS 8904]
Length = 796
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 123/274 (44%), Gaps = 56/274 (20%)
Query: 333 KRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQN 392
+ KG+ + Q+ W +KYRPK +++G N+ G R
Sbjct: 180 RAKGKGVAQT--MWVDKYRPKQFADLLGED-------------NDPL---GRPR------ 215
Query: 393 DASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANS 452
E+ +LSG PG GKTT A +V + G++ +E+NASD R A +
Sbjct: 216 ----ERILLLSGPPGYGKTTLAHVVAKHAGYRTLEINASDDRSAATVSVR---------- 261
Query: 453 IKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASI------------ 499
+ N + + S+ T +++DE+DG S G D + LI I
Sbjct: 262 ----IQNAIDAGSGLGSEGRPTAVVIDEIDGASGGGDTSFVRSLIKLIQDVPAKKKGNQP 317
Query: 500 -KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIAL 558
K + PIICICND Y+ L+ L + +RFRKP Q I RL +I + E L + L
Sbjct: 318 AKPLRRPIICICNDLYAPALRPLRQFARIVRFRKPPTQFIVARLREICDREKLSADTRVL 377
Query: 559 EELADRVNGDIRMAINQLQYMSLSLSVIKYDDIR 592
L + GD+R +N LQ++ V+ D I+
Sbjct: 378 TTLVELTGGDVRSCLNTLQFIKSKSDVVTNDAIK 411
>gi|89268749|emb|CAJ82643.1| replication factor C (activator 1) 1 [Xenopus (Silurana)
tropicalis]
Length = 510
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 72/101 (71%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ NF R+ P G KE+P GA +C+ GLTFVI+G L+S+ER+EA+ L++R+GG+VTG+
Sbjct: 370 AYRNFLNREGPKALGSKEIPIGADNCMEGLTFVITGVLESIERDEAKSLVERYGGKVTGN 429
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA 279
VSKKTNY++ D +K KA+ GT L EDGL ++IR
Sbjct: 430 VSKKTNYIIMGRDAGVSKQEKAEAFGTKILDEDGLLNLIRT 470
>gi|448373527|ref|ZP_21557613.1| replication factor C large subunit [Halovivax asiaticus JCM 14624]
gi|445661479|gb|ELZ14262.1| replication factor C large subunit [Halovivax asiaticus JCM 14624]
Length = 511
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 122/271 (45%), Gaps = 40/271 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T + + GN + L W W++ KA I+ GS
Sbjct: 4 WTEKYRPDTLSAVRGNDKARDALREWAESWDDH------------------RKAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL-SA 464
PG+GKT+AA + + + +E+NASD RGK I + V+ EA S
Sbjct: 46 PGVGKTSAAHALAADMNWPVMELNASDHRGK---------------DIIDRVAGEASKSG 90
Query: 465 NMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
+ + ++I+DE D D GG + +K + PI+ + N+ Y SL N
Sbjct: 91 TLTGGTSGRRLVILDEADNFHGNADYGGSRAVTDVVKSASQPIVLVANEFYDMS-NSLRN 149
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
C + FR + I L I E +E AL +A+ +GD+R A+N LQ ++ S
Sbjct: 150 ACKTIEFRDVSTRSIVPVLRDICRKEDIEFEADALRAIAENTSGDLRSAVNDLQAIAEST 209
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ DD+ ++ ++D F +D+L
Sbjct: 210 ERLTEDDV----VTGSRDTTEGIFDYLDELI 236
>gi|448413827|ref|ZP_21577134.1| replication factor C large subunit [Halosarcina pallida JCM 14848]
gi|445682883|gb|ELZ35294.1| replication factor C large subunit [Halosarcina pallida JCM 14848]
Length = 500
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 127/270 (47%), Gaps = 30/270 (11%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T E+ GN + W W + +A +L G+
Sbjct: 4 WTEKYRPSTLAEVRGNNKARDAFAEWGKTWGDH------------------REAVVLHGA 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G++ +E+NASD R A + + G A K A + +
Sbjct: 46 PGVGKTSAAHALAADMGWETVELNASDQR---TADVIERFAGRAA---KNATLAGAAAGD 99
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++I+DE D + DRGG + +K S PI+ I N+ Y L N
Sbjct: 100 ANGEREGRQLVILDEADNIHGNYDRGGAGAVTRLVKESNQPIVLIANEYYDMS-NGLRNA 158
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
++ FR + I L I EG+E ++ AL+ +A+ +GD+R A+N LQ +
Sbjct: 159 AREIEFRDVSARSIVPVLRDILRKEGIEFDDDALDRIAEVNSGDLRSAVNDLQAAAEGTE 218
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ +D+ +++A+D I F +D +
Sbjct: 219 RLAVEDV----VTAARDSAIGLFEYIDSVL 244
>gi|315230689|ref|YP_004071125.1| replication factor C large subunit [Thermococcus barophilus MP]
gi|315183717|gb|ADT83902.1| replication factor C large subunit [Thermococcus barophilus MP]
Length = 503
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 163/352 (46%), Gaps = 56/352 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRPK EIV +Q ++++ W+ W GT + +KA +L+
Sbjct: 3 IPWVEKYRPKRLREIVNQRQALEKVEAWIKQWVH-----GTPK----------KKALLLA 47
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT + F+ IE+NASD R KI + + +
Sbjct: 48 GPPGSGKTTTVYALANEYKFEVIELNASDER--TFEKIRRYLDAAY-------------- 91
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
MD + ++ +DE D + IA LI ++ PII N +Y + + N
Sbjct: 92 -TMDIFGRRRKLIFLDEADNIEPSGAHEIAKLIDR---ARNPIIMAAN-KYWEVPAEIRN 146
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
+ +++ +++I + L +I AEG+ V + + E+A R +GD+R AIN LQ ++
Sbjct: 147 KAEVVEYKRLTQRDIMQALFRIIKAEGIFVPKEIVAEIAKRASGDLRAAINDLQ----TV 202
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQE 643
+D R+ L + +D + + F A+ +FG + K +L M+ PD + L + E
Sbjct: 203 VAGGIEDAREVL--AYRDVEKTIFQALGLIFGSDNAKRAKMATWNLDMT-PDELLLWVDE 259
Query: 644 N--YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
N YI Y+P IA A +IS DI+ + +R+ + L + +
Sbjct: 260 NIPYIYYKPED-----------IAEAYNAISRADIYLGRAKRSGNYGLWKYA 300
>gi|443914382|gb|ELU36390.1| sister chromatid cohesion-related protein [Rhizoctonia solani AG-1
IA]
Length = 1446
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 119/258 (46%), Gaps = 47/258 (18%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKR-------NGKKQNDASA-- 396
W ++YRPK +++G++++ ++ WL W++ +R G + D
Sbjct: 565 WVDRYRPKCFTDLLGDERVHRETMAWLKEWDQCVFGRRKRRPLRQEANEGPQYQDEHGRP 624
Query: 397 -EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKE 455
EK +LSG PG+GKTT A +V + G+ E+NASD+R G + I+
Sbjct: 625 REKILLLSGPPGLGKTTLAHIVGKQAGYGVAEINASDAR----------TGSIVDDRIRP 674
Query: 456 LV-SNEALSANMDRSKHPKTVLIMDEVDGMSA---------------GDRGGIADLIASI 499
++ S A+ +N ++++DEVDG + GD+GG D +
Sbjct: 675 ILESGTAMGSNK------PVLMVIDEVDGATGDSVSFVRLGYELKARGDKGG-KDSRPLL 727
Query: 500 KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALE 559
+ PIICICND Y+ L L +RFRK + + RL I E L + AL
Sbjct: 728 R----PIICICNDLYAPSLARLRPIARVIRFRKAQPVLLTNRLRDICTEESLRADTRALT 783
Query: 560 ELADRVNGDIRMAINQLQ 577
L GD+R IN LQ
Sbjct: 784 ALVTVTQGDMRACINTLQ 801
>gi|429216859|ref|YP_007174849.1| AAA ATPase [Caldisphaera lagunensis DSM 15908]
gi|429133388|gb|AFZ70400.1| AAA ATPase [Caldisphaera lagunensis DSM 15908]
Length = 473
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 160/346 (46%), Gaps = 46/346 (13%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAA 400
+ + W KYRPK ++I+ ++ Q+ TW+ W E GK+ +KA
Sbjct: 6 EVKIPWIIKYRPKRVDDIINQEEAKSQMLTWIHSWLE----------GKR----PEKKAL 51
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
+L G PG+GKT+ + + + +E+NASD R D IK+ V+N
Sbjct: 52 LLYGPPGVGKTSLVEAIANEYDLELLELNASDYRRTQD--------------IKKTVAN- 96
Query: 461 ALSANMDRSKHPKTVLI-MDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKL 518
A+ R K +LI MDE+DG+S GD GG+ +LI I + PII ND + L
Sbjct: 97 ---ASQKRPLFKKMILILMDEIDGLSPRGDIGGVDELIKIIPNTMNPIILTANDPWKDNL 153
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ + Y S + F+ ++ L I N E LE AL+ +A++ GD+R AIN L+
Sbjct: 154 RPIREYVSMVEFKPLTLNQVISVLQGICNKENLECEREALKFIAEKSMGDLRGAINDLEA 213
Query: 579 MSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVP 638
++ + ++ + ++ +D+ + + ++ +F K R + S+ D
Sbjct: 214 VAEGYGKVTFNLV--SVIVKGRDKSVDLWRTLNGVF---YAKEAWQSRRSVMNSEEDYET 268
Query: 639 LLIQEN------YINYRPSSAGRDEVKRLSLIARAAESISDGDIFN 678
L+ N Y +Y D + R SL + A+S D D+ +
Sbjct: 269 LIAWFNDNVPLKYGDYEDLFRAMDSLSRASLFLKRAKS-GDWDMLS 313
>gi|302690436|ref|XP_003034897.1| hypothetical protein SCHCODRAFT_51070 [Schizophyllum commune H4-8]
gi|300108593|gb|EFI99994.1| hypothetical protein SCHCODRAFT_51070, partial [Schizophyllum
commune H4-8]
Length = 541
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 119/264 (45%), Gaps = 46/264 (17%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLD--TGTKR------NGKKQNDASAE 397
W ++YRP E++GN++ + + W+ W+ G KR G + E
Sbjct: 3 WVDRYRPTRFTELIGNERSARDVMAWVKQWDWCVFGHRKGKKRPREENQEGMDEYHRPQE 62
Query: 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
K ++SG PG+GKTT A +V + G++ +E+NASD+R + +++ +
Sbjct: 63 KLLLMSGPPGLGKTTLAHVVARHAGYEVMEINASDAR--------------SGTEVEDRI 108
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG--IADLIASIK--------------- 500
S + SK P +L++DE+DG ++ D I L+ K
Sbjct: 109 RPALESGSAVGSKKP-VLLVIDEIDGATSADNSSSFIHKLVQLTKDEPSKKRRPGQKRDP 167
Query: 501 -----ISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNE 555
I + PIICICND + L L +R ++P I KRL QI E L +
Sbjct: 168 KTARPILR-PIICICNDPNASALAKLRPQALHVRLQRPADAHIVKRLRQICELEALRADS 226
Query: 556 IALEELADRVNGDIRMAINQLQYM 579
AL L GD+R +N LQ++
Sbjct: 227 QALSALVAVARGDMRGCLNTLQFI 250
>gi|448734127|ref|ZP_21716354.1| replication factor C large subunit [Halococcus salifodinae DSM
8989]
gi|445800636|gb|EMA50985.1| replication factor C large subunit [Halococcus salifodinae DSM
8989]
Length = 493
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 111/238 (46%), Gaps = 34/238 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W DA E A IL
Sbjct: 2 VDWTEKYRPSTLSEVRGNNKARDALAEWAETW-----------------DAHGE-AVILH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G+PG+GKT+AA + + + IE+NASD R KA ++ + A S
Sbjct: 44 GAPGVGKTSAAHALAADMDWPTIELNASDQRTKA--------------VVERIAGEAAKS 89
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + +++MDE D + DRGG + + +K + P+I I N+ Y SL
Sbjct: 90 GTLTEGGAGRRLVVMDEADNLHGNVDRGGSRAITSLVKEAGQPMILIANEFYDMS-NSLR 148
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
N C + FR + I L I E +E ALE +A+ +GD+R A+N LQ ++
Sbjct: 149 NACETIEFRDVGARSILPVLRDICRREDVEYESDALEAIAEANSGDLRGAVNDLQALA 206
>gi|325180998|emb|CCA15408.1| chromosome transmission fidelity protein putative [Albugo laibachii
Nc14]
Length = 875
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 146/344 (42%), Gaps = 75/344 (21%)
Query: 287 AQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVAS--PAKRKGQNIQQSSL 344
++ ES ++ K+ L + P+ I + +A + +A PAK + + Q
Sbjct: 158 SRVESGSAITKLDVVLARSVPEMISSIEERQVQALVSNENAIAEKKPAKEQMKTDHQ--- 214
Query: 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE-KFLDTGTKRNGKKQNDASAEK----- 398
W +KYRPK +++ ++++ +++ W+ W++ FLD ++N A+ EK
Sbjct: 215 LWVDKYRPKRFTDLLSDEKVNREVLFWIKEWDKIVFLDHPNHSYSLQKNAANLEKRTSIK 274
Query: 399 ---------------------AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA 437
+L G PG GKTT A ++ + G+ A+E+NASD R
Sbjct: 275 EENPVNTSKTDRHLDARPKVKIILLCGPPGAGKTTLAHIIAKHAGYNAVEINASDDRTA- 333
Query: 438 DAKISKGIGGSNANSIKELVSNEALSA----NMDRSKHPKTVLIMDEVDG-MSAGDRGGI 492
+++ N+ +SA ++ + K P + I+DE+DG M+AGD
Sbjct: 334 -----------------QVLRNKIISAMEMQSLHKDKRPNCI-ILDEIDGAMNAGDSKSA 375
Query: 493 ADLIASIKISKIP-------------------IICICNDRYSQKLKSLVNYCSDLRFRKP 533
I + + P +ICICND+Y+ L+ L P
Sbjct: 376 ISAIQRMATAPYPPSRQKSNQKNESSHPLSRPLICICNDQYAPVLRPLRKIAKIFLLHPP 435
Query: 534 RKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
Q + RL I+ EGL +N AL R DIR +N LQ
Sbjct: 436 SLQRLVARLKYISRLEGLTINSGALGAFCRRNQCDIRHCLNALQ 479
>gi|385806401|ref|YP_005842799.1| replication factor C large subunit [Fervidicoccus fontis Kam940]
gi|383796264|gb|AFH43347.1| replication factor C large subunit [Fervidicoccus fontis Kam940]
Length = 458
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 132/275 (48%), Gaps = 41/275 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W KYRPK+ E V + V + +W+ W ++ A +KA +L
Sbjct: 7 LPWIIKYRPKSLKEYVNQETAVAIITSWIKDWEKR---------------APTKKAVLLY 51
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKT+ + + G++ +E NASD R + D I V N A+
Sbjct: 52 GPPGVGKTSLIEALANDYGYEIVETNASDYRRRDD--------------IYRKVYNSAIQ 97
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ K ++++DEVDG+S+ GD+GGI ++ I +K PII N+ + LK +
Sbjct: 98 GTLTGRKK---LILLDEVDGLSSTGDKGGIEAIVQLITQTKNPIILTANNAFHPDLKPIR 154
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
+ + + ++ + L I EG+E + L+ + ++ GD+R IN LQ S
Sbjct: 155 DLAVMIELKNLNQKHVLTVLKIICEREGVECEDAGLKVIYEKNRGDLRACINDLQ----S 210
Query: 583 LSVIKYDDIRQRL---LSSAKDEDISPFTAVDKLF 614
++ + Y + + L L+ +D +++PF + +F
Sbjct: 211 IAEV-YGKVNEELATELTYYRDRELNPFDTLRNIF 244
>gi|118431492|ref|NP_147998.2| replication factor C large subunit [Aeropyrum pernix K1]
gi|42559546|sp|Q9YBS5.2|RFCL_AERPE RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|116062817|dbj|BAA80523.2| replication factor C large subunit [Aeropyrum pernix K1]
Length = 479
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 119/243 (48%), Gaps = 34/243 (13%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKA 399
+ S + W KYRPK ++V Q K L W W E G+K + ++A
Sbjct: 6 RSSRVPWVIKYRPKRVEDVVNQDQAKKILVPWFKAWLE----------GRKPD----KRA 51
Query: 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSN 459
A+L G PG+GKT+ + + + IE+NASD R ++D I + +G
Sbjct: 52 ALLYGPPGVGKTSLVEAIASEFNLEMIELNASDYRRRSD--IERIVG------------- 96
Query: 460 EALSANMDRSKHPK-TVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQK 517
+A+ RS + V+++DEVDG++ D GGI L++ IK ++ PI+ ND +
Sbjct: 97 ---AASRKRSMFKRGVVILLDEVDGINPREDAGGIEALLSVIKTTENPIVMTANDPWKDF 153
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
L+ L + FR I L +I AE +E AL +A+R GD+R AIN LQ
Sbjct: 154 LRPLREVSLMVEFRPLTLTHIVAVLQRICEAERIECEREALRYIAERSEGDLRSAINDLQ 213
Query: 578 YMS 580
++
Sbjct: 214 AVA 216
>gi|359415520|ref|ZP_09207967.1| replication factor C large subunit [Candidatus Haloredivivus sp.
G17]
gi|358034123|gb|EHK02581.1| replication factor C large subunit [Candidatus Haloredivivus sp.
G17]
Length = 394
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 147/349 (42%), Gaps = 58/349 (16%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP++ + G K+L W W + +A +L G
Sbjct: 2 WVEKYRPESLEDYRGASNQKKELKDWAEKWEQ------------------GGQAVLLHGQ 43
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
G GKT+ + + L F+ +E NASD R K+ ++KE + A+
Sbjct: 44 AGTGKTSLVEALANDLDFELVETNASDVRTKS--------------ALKEELKGATRQAS 89
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
++++DEVDGM DRGGIA++ I S+ P++ ND Y QK++ L N
Sbjct: 90 F---FGGNKLILVDEVDGMGRSDRGGIAEMKEIISESRFPVVMTANDAYDQKIRPLRNIS 146
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL---S 582
++ I L I EG+ +E A++ +A R G +R AIN L+ ++L
Sbjct: 147 KQVKLDSVHTNSINAHLKWILEQEGIGYDEGAVKRVARRAGGQMRSAINDLEAVALGREK 206
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK--LRMDERIDLSMSDPDLVPLL 640
L +D+ QR D F A+ +F + R + +D D +
Sbjct: 207 LEKEHIEDLDQR------DSRQEIFDALKIIFKTTDAENARRASDNLD---EDAETFMQW 257
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
++EN P R E +A IS D+FN +IRR W L
Sbjct: 258 VRENI----PREYERPEDNE-----KAYYWISKADLFNGRIRRRMSWSL 297
>gi|219852349|ref|YP_002466781.1| replication factor C large subunit [Methanosphaerula palustris
E1-9c]
gi|219546608|gb|ACL17058.1| AAA ATPase central domain protein [Methanosphaerula palustris
E1-9c]
Length = 451
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 161/366 (43%), Gaps = 51/366 (13%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP+ ++ GN ++Q+ W A W++K K +L
Sbjct: 3 MDWTEKYRPEHIRDLTGNAPAIRQMVDWAASWSKK------------------SKPLLLY 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKT++A + + ++ IE+NASD R K +I + + S
Sbjct: 45 GKPGTGKTSSAYALANDMDWEMIELNASDQRTK--------------GAIDRIAGQGSTS 90
Query: 464 ANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
++ + H ++++DE D + DRGG ++ I+ S P+I I ND Y+ +
Sbjct: 91 GSLTGAAHK--LILLDEADNLQGTADRGGARAIVDLIRQSYQPLILIANDIYALP-GEIK 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
C ++F+ + + I RL I +EG+ + AL E+A GD+R A+N L ++
Sbjct: 148 TRCELVQFKALQARSIVPRLRFICASEGIICADEALHEIAGSTRGDLRAAVNALYATAIG 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ I +S KDE + F + +F + + + + PD + ++
Sbjct: 208 RDHLDSASIH----TSQKDERSTIFDLITAVFSGQPDRRLLQQSYAVD-DKPDAILQWLE 262
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPA 702
N + + P IA A S++D D+F R Q + L + +S I A
Sbjct: 263 AN-LEHLPDQRS---------IAAAYRSLADADLFIGDTYRRQHYTLWRYASALMLIGTA 312
Query: 703 ALMHGQ 708
A G+
Sbjct: 313 AAADGR 318
>gi|242398095|ref|YP_002993519.1| Replication factor C large subunit [Thermococcus sibiricus MM 739]
gi|242264488|gb|ACS89170.1| Replication factor C large subunit [Thermococcus sibiricus MM 739]
Length = 487
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 160/352 (45%), Gaps = 56/352 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L WTEKYRPK +IV + ++++ W+ W + +KA +L+
Sbjct: 2 LPWTEKYRPKRLVDIVNQDKALEKIKPWIEEW---------------LHGIPKKKALLLA 46
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT + F+ IE+NASD R KI + + +
Sbjct: 47 GPPGSGKTTTVYALANEYKFEVIELNASDDR--TFGKIERYLNAA--------------- 89
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
MD + ++ +DEVD + IA LI ++ PI+ N RY + + N
Sbjct: 90 YTMDVFGRRRKLIFLDEVDNIEPSGAKEIAKLIGK---AQNPIMMSAN-RYWEVPIEIRN 145
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
+++++ +++I K L +I AEG+ V + L+ +A R GD+R AIN LQ
Sbjct: 146 KAEIVQYKRLSQRDILKALFRITKAEGIFVPKEVLQMIAQRARGDLRAAINDLQ------ 199
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQE 643
+V+ L+ + +D + S F A+ +F + K ++L + PD + L + E
Sbjct: 200 TVVSGGVEDAELILAYRDVEKSIFEALGAIFATDNTKRAKMAIVNLD-NTPDEILLWLDE 258
Query: 644 N--YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
N Y+ Y+P IA+A ++IS DI+ + +R + L + +
Sbjct: 259 NIPYVYYKPED-----------IAKAYDTISRADIYLGRAKRTGNYGLWKYA 299
>gi|76801540|ref|YP_326548.1| replication factor C large subunit [Natronomonas pharaonis DSM
2160]
gi|83288435|sp|Q3ISA5.1|RFCL_NATPD RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|76557405|emb|CAI48982.1| replication factor C large subunit [Natronomonas pharaonis DSM
2160]
Length = 483
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 107/233 (45%), Gaps = 37/233 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE YRP T +E+ GN + W W + +A IL GS
Sbjct: 4 WTEAYRPTTLSEVRGNNKARDAFEEWAKAWEDH------------------REAVILHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASD+R K + + G SNA L
Sbjct: 46 PGVGKTSAAHALANDMGWPVLEMNASDARTKDEIERFAGRAASNAT----------LGGG 95
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ ++I+DE D + DRGG A + +K + P++ I ND Y L +
Sbjct: 96 -------RQLIILDEADNLHQHKDRGGAAAMTRLVKDATQPVVLIANDYYEMS-SGLRSA 147
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
C D+ FR + I L I E +E +E L+E+A+ GD+R A+ LQ
Sbjct: 148 CRDVEFRDVSARSIVPVLRDICRQENVEFDEDVLQEIAEANRGDLRGAVKDLQ 200
>gi|320170447|gb|EFW47346.1| replication factor C subunit 1 [Capsaspora owczarzaki ATCC 30864]
Length = 1056
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 69/102 (67%)
Query: 177 RGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVT 236
R +M R P G KE+P GA +CL GLTFV++G D+++R + E+LIK HGG+VT
Sbjct: 280 RAHYMKMLNRTGPTAIGTKEIPTGATNCLEGLTFVVTGIFDAIDRTDLENLIKAHGGKVT 339
Query: 237 GSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR 278
G+VSKKT YL+ D +K+ AKE+GT + +D +FD+IR
Sbjct: 340 GAVSKKTTYLVAGRDCGISKTRTAKEVGTKIVDDDAVFDLIR 381
>gi|50304385|ref|XP_452142.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641274|emb|CAH02535.1| KLLA0B13739p [Kluyveromyces lactis]
Length = 763
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 128/284 (45%), Gaps = 66/284 (23%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLD------TGTKRNGKKQNDASAEKA 399
WTEK+RP ++VGN++L +++ WL W+ D T K++ +NDAS E A
Sbjct: 115 WTEKWRPHKFLDLVGNERLNRRVLFWLRQWSPLVFDEELPELTTFKKHSNPENDASDEYA 174
Query: 400 ----------AILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSN 449
++ G PG+GKT+ A +V + G+ +E+NASD R
Sbjct: 175 DPLKRPMKRILLIHGPPGIGKTSVAHVVAKQAGYSVMEINASDERA-------------- 220
Query: 450 ANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG------------MSAGDRGGIADLI- 496
+ ++ V N + + LI DE+DG + D DLI
Sbjct: 221 GDRVRHKVQNALFNHTFNDK---PVCLIADEIDGSVENGFIKVLLDIIKSDSKATHDLIT 277
Query: 497 ----------ASIKISKI----------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQ 536
+S ++ K PII +CN+ Y+ L+ L + + F+KP +
Sbjct: 278 GRTGKDHHFKSSARLQKKKKNKDKLLTRPIIAVCNNVYANALEKLRPHSEIIHFQKPSEN 337
Query: 537 EIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ +RL + E + V++ L+ELA GD+R ++N LQ+M+
Sbjct: 338 ALMERLEYVCKKEKVHVSKTLLKELAVLSQGDVRNSLNNLQFMT 381
>gi|18976464|ref|NP_577821.1| replication factor C large subunit [Pyrococcus furiosus DSM 3638]
gi|397652194|ref|YP_006492775.1| replication factor C large subunit [Pyrococcus furiosus COM1]
gi|42559538|sp|Q9UWR2.1|RFCL_PYRFU RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit;
AltName: Full=PfuRFC large subunit
gi|6539526|dbj|BAA88155.1| replication factor C large subunit [Pyrococcus furiosus DSM 3638]
gi|18892003|gb|AAL80216.1| replication factor C, large subunit [Pyrococcus furiosus DSM 3638]
gi|393189785|gb|AFN04483.1| replication factor C large subunit [Pyrococcus furiosus COM1]
Length = 479
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 154/338 (45%), Gaps = 59/338 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPK +EIV ++ ++++ W+ W +KA +L+
Sbjct: 4 LPWVEKYRPKKLSEIVNQEEAIEKVRAWIESW--------------LHGHPPKKKALLLA 49
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT + F+ IE+NASD R KIS+ + +
Sbjct: 50 GPPGSGKTTTVYALANEYNFEVIELNASDER--TYEKISRYVQAAY-------------- 93
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
MD + ++ +DE D + IA LI +K PII N +Y + K +
Sbjct: 94 -TMDILGKRRKIIFLDEADNIEPSGAKEIAKLIDK---AKNPIIMAAN-KYWEVPKEIRE 148
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
+ +++ ++++ L++I EG+ V + L E+A R +GD+R AIN LQ ++
Sbjct: 149 KAELVEYKRLTQRDVMNALIRILKREGITVPKEILLEIAKRSSGDLRAAINDLQ----TV 204
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQE 643
V Y+D Q L + +D + + F A+ +FG + K +L MS PD L + E
Sbjct: 205 VVGGYEDATQVL--AYRDVEKTVFQALGLVFGSDNAKRAKMAMWNLDMS-PDEFLLWVDE 261
Query: 644 N----YINYRPSSAGRDEVKRLSLIARAAESISDGDIF 677
N Y+N P IA+A ++IS DI+
Sbjct: 262 NIPHLYLN--PEE-----------IAQAYDAISRADIY 286
>gi|403363643|gb|EJY81571.1| hypothetical protein OXYTRI_20915 [Oxytricha trifallax]
Length = 745
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 182/402 (45%), Gaps = 71/402 (17%)
Query: 185 ERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTN 244
E++ + +KE A LGG ++ ++ + + R++ E+ IK++GGR+ V+K +
Sbjct: 93 EKRMKTYDHDKEFMNEARGPLGGGSYEVTKVFEDITRDKLEEFIKKNGGRMVTQVTKVCD 152
Query: 245 YLLCDEDIA-------GAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEK 297
Y++ + + G K K L +TE F+ S ++ E KK
Sbjct: 153 YVIYRKLLDDGRQVTDGQKYKKGLALKQKLMTEKE-FEAFCKSDFKIQISCLEGKKERYN 211
Query: 298 -----VAASLPK------KSPQNIEAKSTSAP------------KAPI----ERMKTVAS 330
LP KS +I +++ P P+ E M+ +
Sbjct: 212 RKRRGQFCCLPYSRLNLGKSRTHIPVQNSIIPPKDKPQQTIKPLNIPLIFDEEVMEVEPN 271
Query: 331 PAKRKGQNIQQSSL--TWTEKYRPKTPNE--------------IVGNQQLVKQLHTWLAH 374
P + G ++ ++L + Y K P E I +++ WL
Sbjct: 272 PNETTGPGLKITALKACKNQSYPQKNPLELNYGLISKHLRVLVISLATRVIVNFREWLVD 331
Query: 375 WNEKFLDTGTKRNGKKQNDASAEK----------AAILSGSPGMGKTTAAKLVCQMLGFQ 424
W E F+ G +++ + + D S A ++SG P +GKT++ +++ + LG+
Sbjct: 332 W-EDFVIRGQQKDIQHKGDWSRAAYQDLPRINAIACLISGPPCIGKTSSVRIIAKELGYN 390
Query: 425 AIEVNASDSRGKADAK-ISKGIGGSNANSIKELVSNEALSAN-MDRSKHPKTVLIMDEVD 482
+E NAS++R K + + + + +N N+ N M ++K KT+++MDEVD
Sbjct: 391 LMEFNASENRSKKSIENLLQSMTTCKSN-------NKYQQYNIMSKNKKEKTLILMDEVD 443
Query: 483 GMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
G+SA DRGG+ LI IK + IPI+C+ ND +KL SL+N+
Sbjct: 444 GISANDRGGLGALIQIIKKTLIPIVCVANDSKHRKLVSLLNH 485
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 633 DPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQS 692
DPDL+P+ IQENY+ + +++ RL A + IS GD N QIR++Q W L
Sbjct: 509 DPDLMPMFIQENYLTAFGQLSKLEDLMRL---ADVVDYISIGDQINNQIRQHQDWALLPY 565
Query: 693 SSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDL-----HFHHL 747
+ S + L G + +F W GK ST K+ RL+ ++ H +
Sbjct: 566 LGIMSSVDIGNLCFGFVP--------YAKFPEWFGKFSTTRKSTRLIREIRERCGHHLYT 617
Query: 748 ASRKSKLGRDTLRLDYFSLLLK-QLTEPLRVL 778
A R K TL + + LL+ + E + +L
Sbjct: 618 AKRAIKFEHVTLIFELVNTLLQPNILEAVNIL 649
>gi|19111992|ref|NP_595200.1| RFC-like complex subunit Ctf18 [Schizosaccharomyces pombe 972h-]
gi|74698425|sp|Q9USQ1.1|CTF18_SCHPO RecName: Full=Chromosome transmission fidelity protein 18
gi|6522992|emb|CAB62096.1| RFC-like complex subunit Ctf18 [Schizosaccharomyces pombe]
Length = 960
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 137/309 (44%), Gaps = 59/309 (19%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKR-------------- 386
QS W + YRP+ +++G++++ + W+ W+ G R
Sbjct: 348 QSQKLWVDTYRPQLFRDLLGDERVHRAAMHWIKAWDPCVF--GKSRLQPSKSMRFNPRFT 405
Query: 387 NGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIG 446
N +D ++ +L+G G GKTT A ++ G++ +E+NASD R
Sbjct: 406 NITSDSDRPDKRIMMLTGLAGAGKTTLAHVIAHQAGYKVLEINASDDR------------ 453
Query: 447 GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI-- 504
A+++ E VS+ A+S + S P T +I+DE+DG GD + L++ ++ +
Sbjct: 454 --TAHTVHEKVSS-AISNHSALSSQP-TCVIVDEIDG---GDPAFVRALLSLLESDEKAT 506
Query: 505 -------------------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQI 545
PIICICND Y+ L+ L Y + FR P + + RL I
Sbjct: 507 EYSQAGNSKKKKKFKKLCRPIICICNDLYTPALRPLRPYAQIIYFRPPPQASLVGRLRTI 566
Query: 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDIS 605
E + V+ +L L D N DIR IN LQ +SL+ I + I+ L K S
Sbjct: 567 CRNENIAVDSRSLTLLTDIYNSDIRSCINSLQLLSLNNKRIDSETIK---LLQPKSNSFS 623
Query: 606 PFTAVDKLF 614
+ + LF
Sbjct: 624 TSSLIQSLF 632
>gi|15790579|ref|NP_280403.1| replication factor C large subunit [Halobacterium sp. NRC-1]
gi|10581095|gb|AAG19883.1| replication factor C large subunit [Halobacterium sp. NRC-1]
Length = 501
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 149/347 (42%), Gaps = 49/347 (14%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
S + WTEKYRP + +E+ GN L W W + +A +
Sbjct: 30 SMVDWTEKYRPASLSEVRGNDTARDALAEWAETWPDH------------------REAVV 71
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
+ GSPG+GKT+AA + G+ +E+NASD R A+ ++ + A
Sbjct: 72 VHGSPGIGKTSAAHALANDAGWDVVELNASDQR--------------TADVVERVAGEAA 117
Query: 462 LSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
S + + ++++DE D + DRGG A + + + PI+ + N+ Y S
Sbjct: 118 RSGTLTGGSGGRKLVLLDEADNLHGNIDRGGSAAITRLVDDAPQPIVLVANEYYEMS-SS 176
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
L + C ++ FR K+ I L + E + E AL +A++ GD+R A+N LQ ++
Sbjct: 177 LRSACREIEFRDVSKRSIVPVLRDVCRREDVTYEEDALAAIAEQNAGDLRSAVNDLQALA 236
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
+ DD+ + +D F +D + + + + D+ + DL+ +
Sbjct: 237 EQDRTLTADDV----VMGERDRTEGVFDYLDDVIATHSAREALQAAYDVDETPDDLLSWV 292
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
+YR +A A E +S+ D++ ++R Q +
Sbjct: 293 ADNVPKDYRGGE-----------LADAYEFLSNADVWLGRVRATQNY 328
>gi|389860408|ref|YP_006362647.1| replication factor C large subunit [Thermogladius cellulolyticus
1633]
gi|388525311|gb|AFK50509.1| replication factor C large subunit [Thermogladius cellulolyticus
1633]
Length = 427
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 166/351 (47%), Gaps = 53/351 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W KYRPK +E V ++ K +W W + G+ + +KAA+L
Sbjct: 5 LPWIIKYRPKNLDEFVDQEEAKKVFISWYEDW----------KKGEVK-----KKAALLY 49
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GK++ + G + E+NASD R K D I L+ A S
Sbjct: 50 GPPGTGKSSFVQAFAATYGLELYEMNASDYRRKGD--------------IDRLLRVTASS 95
Query: 464 ANMD-RSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
++ R K ++ +DEVDG++ D GG+ ++ I+ SK P++ ND Y+ ++ L
Sbjct: 96 GSLSGRGK----LIFLDEVDGLNPKSDAGGLEAILQLIENSKHPVVMAANDAYNPNIRPL 151
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
+ + F++ R+ + + L +I E + ++ AL+ +A R GD+R AIN L+ ++
Sbjct: 152 RDVSLLIEFKRLREGAVVQLLSRICEKERVRCDKDALDVIAKRSEGDLRSAINDLEAIAE 211
Query: 582 SLSVIKYDDIRQRL---LSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVP 638
+ Y + + L +S+ +D + +PF + ++F + + + + D D +
Sbjct: 212 A-----YGRVTKELAMSVSTYRDREYAPFEVLRRVFN-AKYIFQAKDAVSSANIDYDTLK 265
Query: 639 LLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+ I E+ Y +EV +RA E++S D++ +I ++ W L
Sbjct: 266 VWINEHIPTYYEDP---EEV------SRAFEALSRADVYMGRIIKSGSWDL 307
>gi|448358570|ref|ZP_21547250.1| replication factor C large subunit [Natrialba chahannaoensis JCM
10990]
gi|445645719|gb|ELY98718.1| replication factor C large subunit [Natrialba chahannaoensis JCM
10990]
Length = 510
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 34/247 (13%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE YRP T +E+ GN + +L W W++ + A I+ GS
Sbjct: 4 WTETYRPTTLSEVRGNNKARDKLEEWAETWDDH------------------QDAVIVHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + LG+ +E+NASDSRG A+ I+ + A S
Sbjct: 46 PGVGKTSAAHALANDLGWPVMELNASDSRG--------------ADVIERIAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++I+DE D D GG ++ +K + P++ + N+ Y +SL N
Sbjct: 92 LTGGESGRRLVILDEADNFHGNADYGGSREVTRVVKSANQPMVLVANEFYDMS-QSLRNA 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I E +E E ALEE+A+ +GD+R A+N LQ ++
Sbjct: 151 CETIEFRDVSKRSIVPVLRDICRREDIEYEEEALEEIAEGTSGDLRSAVNDLQAVAEEAE 210
Query: 585 VIKYDDI 591
+ DD+
Sbjct: 211 RLTVDDV 217
>gi|242224036|ref|XP_002477546.1| predicted protein [Postia placenta Mad-698-R]
gi|220722757|gb|EED77253.1| predicted protein [Postia placenta Mad-698-R]
Length = 173
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 8/173 (4%)
Query: 478 MDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQE 537
MDEVDGMSAGDRGG+ L A I+ +KIPIICI NDR + K+K L N +L FR+P
Sbjct: 1 MDEVDGMSAGDRGGVGALAALIRKTKIPIICIANDRGAPKMKPLSNAAYNLTFRRPEATT 60
Query: 538 IAKRLMQIA----NAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQ 593
I R++ IA + E +++ +++L + DIR +N L LS + +D+ +
Sbjct: 61 IRSRILSIAFKIHHREKMKIPANVIDQLIEGAQSDIRQVLNMLSTWKLSNDTMNFDEGKA 120
Query: 594 RLLSSAKDEDISPFTAVDKLFG---FN-GGKLRMDERIDLSMSDPDLVPLLIQ 642
++ K ++PF + K+ G F+ + ++++++L D VPL IQ
Sbjct: 121 LAKANEKYGIMTPFNIIQKMLGPYMFSPTARETLNDKMELYFHDHSFVPLFIQ 173
>gi|426199878|gb|EKV49802.1| hypothetical protein AGABI2DRAFT_63250, partial [Agaricus bisporus
var. bisporus H97]
Length = 551
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 117/265 (44%), Gaps = 46/265 (17%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL----------DTGTKRNGKKQNDAS 395
W ++YRP +++GN ++ ++ W+ W+ D N +
Sbjct: 5 WVDRYRPTCFTDLIGNDRVARETMAWVKQWDYCVFGKKKGKKRQRDEDENFNADDEYHRP 64
Query: 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKE 455
EK +LSG PG+GKTT A +V + G+ +E+NASD+RG N I +
Sbjct: 65 REKMLLLSGPPGLGKTTLAHIVARHAGYDVVEINASDARG--------------GNVIND 110
Query: 456 LVSNEALSANMDRSKHPKTVLIMDEVDGMS-AGDRGG--IADLIASIKISK--------- 503
+ S + P ++I+DE+DG + AGD I +L+ + ++
Sbjct: 111 RIRPTLESGSSVNGTKP-VLVIIDEIDGATGAGDNTSSFIHNLVQFTQNTRGKKKRLGNK 169
Query: 504 ---------IPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVN 554
PIICICND + L L + +RF +P +RL +I E L+ +
Sbjct: 170 QVNAQRPLLRPIICICNDINASSLVKLRPHAYQVRFTRPADFHTVRRLQEICGNEKLKAD 229
Query: 555 EIALEELADRVNGDIRMAINQLQYM 579
AL L GD+R IN LQ++
Sbjct: 230 VRALGVLVAMARGDLRGCINTLQFV 254
>gi|401418851|ref|XP_003873916.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490149|emb|CBZ25410.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1289
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 135/307 (43%), Gaps = 64/307 (20%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL--DTGTKRNGKKQNDASA------- 396
W KY PK +E++ ++ + +L WL W+ D + G + + A A
Sbjct: 326 WVTKYSPKLFHEVLSDETVNLRLLQWLKSWDAYVFPDDAPSAAKGAQASGAGAITAASPP 385
Query: 397 -EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR--GKADAKI------------ 441
E+ A+L+G PG+GKTT ++ G++ IEVNAS R + +A I
Sbjct: 386 AERIAVLTGPPGVGKTTLVHVLAAHCGYEVIEVNASVERTASRLEALIKTAVSAAGPAPG 445
Query: 442 --------SKGIGGSNANSIKELV--------SNEALSANMDRSKHPKT----------- 474
S G+ GS ++I S A A M + P T
Sbjct: 446 GRVRRPTASSGVAGSAVSTIDHRANLGVEKGHSGGASGAEMAATGAPSTPHASSSLVQHL 505
Query: 475 ----VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRF 530
L++DE+DG++ +A + ++ + P+ C+CND Y L+ L +C+ +
Sbjct: 506 LRPKCLVIDEMDGIA---NSSVAAYLTQQQLHR-PVFCLCNDFYVPSLRPLRQHCTHVYH 561
Query: 531 RKP-RKQEIAKRLMQIANAEGLEV-NEIALEELADRVNGDIRMAINQLQYMSLSLSVIKY 588
P R Q + RL +IA EG + + +AL EL GD+R +N +Q +S S +
Sbjct: 562 MPPIRPQRLLSRLEEIARREGAAMFDSMALSELIKTSGGDVRSCLNAMQLIS---SAVHQ 618
Query: 589 DDIRQRL 595
+QRL
Sbjct: 619 QQEQQRL 625
>gi|72392000|ref|XP_846294.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62175320|gb|AAX69464.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70802830|gb|AAZ12735.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 993
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 126/262 (48%), Gaps = 24/262 (9%)
Query: 333 KRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQN 392
+R+G ++ SL W KY PK +++ + +L W+ W+E G +
Sbjct: 180 QRRGPLSEEDSL-WVIKYTPKRFRDLLSDDTTNLKLLQWMKSWDEYTFRNGASPGADGLS 238
Query: 393 DASA----EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS 448
+ + ++ A+L G PG+GKTT A ++ G++ IE+NAS R + + + + S
Sbjct: 239 SSPSTRPDDRIAVLVGPPGVGKTTLAHVLALHCGYEPIEINASVDRTASGIESAIQLAVS 298
Query: 449 NANSIKELVSNEALSAN----------MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIAS 498
S + + ++N +D PK LI+DE+DG++A A +
Sbjct: 299 PGRSRRRVQRPAVPTSNGGNGGSATSLVDMLMLPK-CLIIDEMDGIAA----NFASFLLK 353
Query: 499 IKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKP--RKQEIAKRLMQIANAEGLEVNEI 556
I P++C+CND Y L+ L C L F P R Q + +RL +IA E ++V +
Sbjct: 354 QDI-HCPVLCLCNDYYVPSLRLLRQQCR-LVFHVPPIRPQRLLQRLGEIAEHENIKVADA 411
Query: 557 ALEELADRVNGDIRMAINQLQY 578
L EL NGD+R +N LQ+
Sbjct: 412 VLAELVRASNGDVRCCLNTLQF 433
>gi|261329930|emb|CBH12913.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 993
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 123/271 (45%), Gaps = 42/271 (15%)
Query: 333 KRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQN 392
+R+G ++ SL W KY PK +++ + +L W+ W+E G +
Sbjct: 180 QRRGPLSEEDSL-WVIKYTPKRFRDLLSDDTTNLKLLQWMKSWDEYTFRNGASPGADGLS 238
Query: 393 DASA----EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS----------------- 431
+ + ++ A+L G PG+GKTT A ++ G++ IE+NAS
Sbjct: 239 SSPSTRPDDRIAVLVGPPGVGKTTLAHVLALHCGYEPIEINASVDRTASGIESAIQLAVS 298
Query: 432 --DSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR 489
SR +A G N S+ LV L PK LI+DE+DG++A
Sbjct: 299 PGRSRRRAQRPAVPTSNGGNGGSVTSLVDMLML---------PK-CLIIDEMDGIAA--- 345
Query: 490 GGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKP--RKQEIAKRLMQIAN 547
A + I P++C+CND Y L+ L C L F P R Q + +RL +IA
Sbjct: 346 -NFASFLLKQDI-HCPVLCLCNDYYVPSLRLLRQQCR-LVFHVPPIRPQRLLQRLGEIAE 402
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQY 578
E ++V + L EL NGD+R +N LQ+
Sbjct: 403 HENIKVADAVLAELVRASNGDVRCCLNTLQF 433
>gi|448728943|ref|ZP_21711263.1| replication factor C large subunit [Halococcus saccharolyticus DSM
5350]
gi|445795991|gb|EMA46508.1| replication factor C large subunit [Halococcus saccharolyticus DSM
5350]
Length = 488
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 138/305 (45%), Gaps = 45/305 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +A IL
Sbjct: 2 VDWTEKYRPSTLSEVRGNNKARDALAEWAETWDDH------------------REAVILH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL- 462
G+PG+GKT+AA + + + IE+NASD R KA + E V+ EA
Sbjct: 44 GAPGVGKTSAAHALAADMDWPTIELNASDQRTKA---------------VVERVAGEAAK 88
Query: 463 SANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
S + + ++++DE D + DRGG + + +K + P++ I N+ Y SL
Sbjct: 89 SGTLTGGSAGRRLVVLDEADNLHGNVDRGGSRAITSLVKEAGQPMVLIANEFYDMS-NSL 147
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
N C + FR + I L I E +E ALE +A+ +GD+R A+N LQ ++
Sbjct: 148 RNACETIEFRDVSARSILPVLRDICRREEVEYESEALEAIAESNSGDLRGAVNDLQALAE 207
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPL 639
+ +D+ ++ +D F +D L G LR +D + PD +
Sbjct: 208 VNEQLTAEDV----VTGDRDRTTGIFDFLDALIKEEDAEGALRSSYDVDET---PDDLIN 260
Query: 640 LIQEN 644
I++N
Sbjct: 261 WIEDN 265
>gi|74224592|dbj|BAE25264.1| unnamed protein product [Mus musculus]
Length = 255
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 9/155 (5%)
Query: 621 LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQ 680
+ + ++ DL D + PL +QENY++ +P +AG D K L L++RAA+SI DGD+ + Q
Sbjct: 1 MSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDNQ 60
Query: 681 IRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLE 740
IR Q W L + ++ + ++P LM G F F WLGK+S+ GK+ R+++
Sbjct: 61 IRSKQNWSLLPTQAIYASVLPGELMRGYM-------TQFPSFPSWLGKHSSTGKHDRIVQ 113
Query: 741 DLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
DL H S ++ + T+ +DY S + L PL
Sbjct: 114 DLSLH--MSLRTYSSKRTVNMDYLSHIRDALVRPL 146
>gi|169236316|ref|YP_001689516.1| replication factor C large subunit [Halobacterium salinarum R1]
gi|42559531|sp|Q9HPI4.2|RFCL_HALSA RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|226739138|sp|B0R601.1|RFCL_HALS3 RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|167727382|emb|CAP14170.1| replication factor C large subunit [Halobacterium salinarum R1]
Length = 471
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 148/345 (42%), Gaps = 49/345 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP + +E+ GN L W W + +A ++
Sbjct: 2 VDWTEKYRPASLSEVRGNDTARDALAEWAETWPDH------------------REAVVVH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + G+ +E+NASD R A+ ++ + A S
Sbjct: 44 GSPGIGKTSAAHALANDAGWDVVELNASDQR--------------TADVVERVAGEAARS 89
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + ++++DE D + DRGG A + + + PI+ + N+ Y SL
Sbjct: 90 GTLTGGSGGRKLVLLDEADNLHGNIDRGGSAAITRLVDDAPQPIVLVANEYYEMS-SSLR 148
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
+ C ++ FR K+ I L + E + E AL +A++ GD+R A+N LQ ++
Sbjct: 149 SACREIEFRDVSKRSIVPVLRDVCRREDVTYEEDALAAIAEQNAGDLRSAVNDLQALAEQ 208
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ + +D F +D + + + + D+ + DL+ +
Sbjct: 209 DRTLTADDV----VMGERDRTEGVFDYLDDVIATHSAREALQAAYDVDETPDDLLSWVAD 264
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
+YR +A A E +S+ D++ ++R Q +
Sbjct: 265 NVPKDYRGGE-----------LADAYEFLSNADVWLGRVRATQNY 298
>gi|324501627|gb|ADY40722.1| Chromosome transmission fidelity protein 18 [Ascaris suum]
Length = 815
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 112/470 (23%), Positives = 201/470 (42%), Gaps = 73/470 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL----------------DTGTKRNGK 389
W EKY P++ +++ + ++ + L WL W+E D T NGK
Sbjct: 222 WVEKYAPRSFVDLISDDRVNRFLLKWLKLWDECVFKRSIPDSMLKSGEDRDDIITLDNGK 281
Query: 390 KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSN 449
+ ++K +++G G GKTT A + + G++ +E+NASD R +D + I G+
Sbjct: 282 PRR--PSQKVVLIAGPAGFGKTTLASVTARHCGYRVVEMNASDDRNVSD--FERKIEGA- 336
Query: 450 ANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIA--SIKISKIPII 507
S++ L D P +L+ DE+DG A + +A K + P+I
Sbjct: 337 IRSVRTL----------DTDGRPNCLLV-DEIDGAPADAIRYLCKTLALRGRKAIRRPVI 385
Query: 508 CICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567
CICN+ Y L+ L + L+ + + +RL+QIA E + + A+ E+ +
Sbjct: 386 CICNNLYVPSLRELRSVALVLQMPHSEQHRLERRLLQIARCEHIRIETGAVAEIINICAQ 445
Query: 568 DIRMAINQLQYMSLSLS--VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDE 625
D+R +IN LQ++++ S VI ++ +R + + LF G L +
Sbjct: 446 DLRSSINALQFIAVESSSGVIDHNAVRS---YGEHETQLLKCGGEKSLFDVWGAVLEVGR 502
Query: 626 RID-----LSMSDPDL-VPLLIQEN-----------YINYRPSSAGRDEVKRLSLIARAA 668
+D L +S V L Q + NY +S+G R+S I+ AA
Sbjct: 503 HVDGHGHVLDVSTRTCRVDALCQRFASESDRFHSGLFANYLSTSSGS---HRISSISAAA 559
Query: 669 ESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQR--ETLEQGERNFNRFGGWL 726
+ D D + + +Q ++L + +S + + QR T ++N W
Sbjct: 560 RTFCDYDYLSYAVGHSQNYELMKYMFASSVQLHLLVASSQRLQLTFPIADQNV-----WQ 614
Query: 727 GKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLR 776
+ +M L + D S + + + TL LD +++ + PL+
Sbjct: 615 KRRESMETVLTVRAD-------STQRGIPQQTLILDLLPMIILIVQPPLK 657
>gi|255713390|ref|XP_002552977.1| KLTH0D05852p [Lachancea thermotolerans]
gi|238934357|emb|CAR22539.1| KLTH0D05852p [Lachancea thermotolerans CBS 6340]
Length = 702
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 122/281 (43%), Gaps = 60/281 (21%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAA-- 400
S WTEK++P T ++VGN++ +++ WL W+ + D A
Sbjct: 86 SQLWTEKWKPHTFFDLVGNEKTNRRVLKWLRQWSPLVFGQELPKKAPSVRDKVGADGANY 145
Query: 401 --------------ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIG 446
+L+G PG+GKT+ A +V + GF IE+NASD R
Sbjct: 146 DFDDPLQRPQKRILLLNGPPGIGKTSVAHVVAKQAGFSVIEINASDERA----------- 194
Query: 447 GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG-MSAGDRGGIADLIASI------ 499
+K+ + N + D LI DE+DG + G + D++ S
Sbjct: 195 ---GPHVKDRIHNALFNHTFDDRP---VCLIADEIDGSIETGFVKVLIDIVNSDYRATQR 248
Query: 500 --------------------KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIA 539
K+ PII ICN+ Y+ L+ L +C + FR+P + +
Sbjct: 249 LASGASSAVQRGKRKQRSPGKVLTRPIITICNNVYASALEKLRPHCEIVTFRRPAESALL 308
Query: 540 KRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+RL + E L++++ L+EL++ GD+R +N +Q+M+
Sbjct: 309 ERLSHVCRKEKLQLDKKRLKELSELSQGDLRSCLNNMQFMA 349
>gi|347524284|ref|YP_004781854.1| AAA ATPase central domain containing protein [Pyrolobus fumarii 1A]
gi|343461166|gb|AEM39602.1| AAA ATPase central domain protein [Pyrolobus fumarii 1A]
Length = 504
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 159/359 (44%), Gaps = 61/359 (16%)
Query: 344 LTWTEKYRPKTPN-------EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASA 396
L W KYRPK + +V +Q + WL W +GK
Sbjct: 10 LPWVIKYRPKCIDPKPGCIMHVVDQEQAKRLFVPWLKQW----------LSGKPPE---- 55
Query: 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
+KA + G G GKT+ + + +E+NASD R K D + + + +
Sbjct: 56 KKAVLFYGPAGCGKTSLVEAAAHEYNLELVEMNASDFRRKEDIERVARVAATQMSLFGR- 114
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYS 515
K ++++DEVDG+S D+GG+ ++ I+++K PI+ ND +
Sbjct: 115 ----------------KKIILLDEVDGISGTADKGGLDAVLHLIEVAKHPIVMTANDPWD 158
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
QKLK L + + F + + + + + L +I EG+ ALE LA R GD+R AIN
Sbjct: 159 QKLKPLRDASLMVPFYRLQDRYVVEVLSRICKLEGIHCEPEALELLAKRAEGDLRSAIND 218
Query: 576 LQ-----YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLS 630
LQ Y +++ +++ L++++D + +P+ +D LF K + ++
Sbjct: 219 LQGIAEGYGEVTVQLVQ-------ALATSRDREYNPYEMLDHLF---KSKYAWQAKRAVT 268
Query: 631 MSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
++ D +L +IN A D + RA E+++ D + +IR+ W L
Sbjct: 269 HANLDYETIL---QWINENIPVAYDDPED----VWRAHEALARADQYLGRIRKTIDWSL 320
>gi|159164362|pdb|2EBU|A Chain A, Solution Structure Of The Brct Domain From Human
Replication Factor C Large Subunit 1
Length = 112
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 67/86 (77%)
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
G KE+P+GA +CL GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D
Sbjct: 11 GSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDS 70
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIR 278
+KS KA LGT + EDGL ++IR
Sbjct: 71 GQSKSDKAAALGTKIIDEDGLLNLIR 96
>gi|403174881|ref|XP_003333796.2| hypothetical protein PGTG_15556 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171358|gb|EFP89377.2| hypothetical protein PGTG_15556 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1043
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 146/344 (42%), Gaps = 72/344 (20%)
Query: 331 PAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN----EKFLDTGTKR 386
P K + N SL WT++YRP +++G+++ + +WL W+ +K KR
Sbjct: 372 PPKVETSNPGPRSL-WTDRYRPVKFIDLIGDERTFRSAMSWLKTWDRCVFKKVESNKRKR 430
Query: 387 NGKKQNDASA--------------------EKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426
K Q +A EK +L+G PG+GKTT A+++ G+Q I
Sbjct: 431 QSKVQPQWNANGPSNSFAEAAETDPYGRPHEKVLLLAGKPGLGKTTMAEVLATQAGYQVI 490
Query: 427 EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMD-------RSKHPKTVLIMD 479
E+NASD R S+ + + IK + + L A +S P T +I+D
Sbjct: 491 EINASDDRS------SRTV----TDQIKSALESRTLDAGAKFGGGLSLKSNRP-TCVIID 539
Query: 480 EVDGMS-------------AGDRGGIADLIA--SIKISKI--------------PIICIC 510
E+DG + AG + L+ S K PIICIC
Sbjct: 540 EIDGAAAGGGGGGGAGGSEAGFVKALVKLVTEGSSNAPKFNSKGKSLDQRPLLRPIICIC 599
Query: 511 NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570
ND Y+ L+ L +RF P I KRL I +E L + L L +GD+R
Sbjct: 600 NDLYAPVLRPLRPISRIIRFNNPTPLTIVKRLQTICKSEKLLADLNNLNYLVKLASGDLR 659
Query: 571 MAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+N LQ++S + + I+ + +S KD S T + LF
Sbjct: 660 SCLNTLQFISTQSTTLTDQIIKSAVEASVKDSGSSIQTVLSHLF 703
>gi|323332048|gb|EGA73459.1| Ctf18p [Saccharomyces cerevisiae AWRI796]
Length = 611
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 135/313 (43%), Gaps = 57/313 (18%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE---- 397
S W EK+RPK ++VGN++ +++ WL W + ++ + E
Sbjct: 112 SDTLWVEKWRPKKFLDLVGNEKTNRRMLGWLRQWTPAVFKEQLPKLPTEKEVSDMELDPL 171
Query: 398 -----KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANS 452
K +L G PG+GKT+ A ++ + GF E+NASD R G
Sbjct: 172 KRPPKKILLLHGPPGIGKTSVAHVIAKQSGFSVSEINASDERA----------GPMVKEK 221
Query: 453 IKELVSNEALSANMDRSKHPKTVLIMDEVDG-MSAGDRGGIADLIAS-IKISKI------ 504
I L+ N N L+ DE+DG + +G + D++ S IK +
Sbjct: 222 IYNLLFNHTFDTN-------PVCLVADEIDGSIESGFIRILVDIMQSDIKATNKLLYGQP 274
Query: 505 -----------------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
PIICICN+ Y+ L+ L +C + ++P + +RL I +
Sbjct: 275 DKKDKKRKKKRSKLLTRPIICICNNLYAPSLEKLKPFCEIIAVKRPSDTTLLERLNLICH 334
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL------SVIKYDDIRQRLLSSAKD 601
E + + A+ +L D GD+R IN LQ+++ ++ + K + SS KD
Sbjct: 335 KENMNIPIKAINDLIDLAQGDVRNCINNLQFLASNVDSRDSSASDKPACAKNTWASSNKD 394
Query: 602 EDISPFTAVDKLF 614
IS F V++LF
Sbjct: 395 SPISWFKIVNQLF 407
>gi|151946236|gb|EDN64467.1| chromosome transmission fidelity-related protein [Saccharomyces
cerevisiae YJM789]
gi|349580359|dbj|GAA25519.1| K7_Ctf18p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 741
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 134/313 (42%), Gaps = 57/313 (18%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE---- 397
S W EK+RPK ++VGN++ +++ WL W + ++ + E
Sbjct: 112 SDTLWVEKWRPKKFLDLVGNEKTNRRMLGWLRQWTPAVFKEQLPKLPTEKEVSDMELDPL 171
Query: 398 -----KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANS 452
K +L G PG+GKT+ A ++ + GF E+NASD R G
Sbjct: 172 KRPPKKILLLHGPPGIGKTSVAHVIAKQSGFSVSEINASDERA----------GPMVKEK 221
Query: 453 IKELVSNEALSANMDRSKHPKTVLIMDEVDG-MSAGDRGGIADLIAS-IKISKI------ 504
I L+ N N L+ DE+DG + +G + D++ S IK +
Sbjct: 222 IYNLLFNHTFDTN-------PVCLVADEIDGSIESGFIRILVDIMQSDIKATNKLLYGQP 274
Query: 505 -----------------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
PIICICN+ Y+ L+ L +C + ++P + +RL I +
Sbjct: 275 DKKDKKRKKKRSKLLTRPIICICNNLYAPSLEKLKPFCEIIAVKRPSDTTLLERLNLICH 334
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMSL------SLSVIKYDDIRQRLLSSAKD 601
E + + A+ +L D GD+R IN LQ+++ S + K + SS KD
Sbjct: 335 KENMNIPIKAINDLIDLAQGDVRNCINNLQFLASNVDSRDSTASDKPACAKNTWASSNKD 394
Query: 602 EDISPFTAVDKLF 614
IS F V++LF
Sbjct: 395 SPISWFKIVNQLF 407
>gi|302348724|ref|YP_003816362.1| Replication factor C large subunit [Acidilobus saccharovorans
345-15]
gi|302329136|gb|ADL19331.1| Replication factor C large subunit [Acidilobus saccharovorans
345-15]
Length = 484
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 127/282 (45%), Gaps = 34/282 (12%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAA 400
Q + W KYRPK+ N++V ++ Q TWL W + ++AA
Sbjct: 4 QQRIPWIIKYRPKSVNDVVDQEEAKSQFLTWLEAW--------------LKGRPPEKRAA 49
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
+L G PG+GKT+ + + +E+NASD R D + + G+ L+
Sbjct: 50 LLYGPPGVGKTSLVEAAAHDYKLEVLELNASDYRRAEDIRRTVGVAAFRRPLTGRLM--- 106
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLK 519
+++MDEVDG+SA GD GG+ +L+ I ++ PI+ ND + +L+
Sbjct: 107 --------------IILMDEVDGISAKGDAGGLDELLRIIPNAQNPIVLTANDPWKDQLR 152
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L + F+ + L I + E +E + AL +AD+ GD+R +N L+ +
Sbjct: 153 PLREVTLMIEFKNLSTGNVVSLLQNICDREHIECDREALRYIADKNAGDVRACVNDLEAV 212
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKL 621
+ + + R L +D+ I + ++ +F G +
Sbjct: 213 AEGYGKVTME--LARALVRGRDKSIDLWRTLNDVFYAKAGWM 252
>gi|401884395|gb|EJT48562.1| sister chromatid cohesion-related protein [Trichosporon asahii var.
asahii CBS 2479]
Length = 793
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 116/259 (44%), Gaps = 56/259 (21%)
Query: 333 KRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQN 392
+ KG+ + Q+ W +KYRPK +++G N+ G R
Sbjct: 180 RAKGKGVAQT--MWVDKYRPKQFADLLGED-------------NDPL---GRPR------ 215
Query: 393 DASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANS 452
E+ +LSG PG GKTT A +V + G++ +E+NASD R A +
Sbjct: 216 ----ERILLLSGPPGYGKTTLAHVVAKHAGYRTLEINASDDRSAATVSVR---------- 261
Query: 453 IKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASI------------ 499
+ N + + S+ T +++DE+DG S G D + LI I
Sbjct: 262 ----IQNAIDAGSGLGSEGRPTAVVIDEIDGASGGGDTSFVRSLIKLIQDVPAKKKGNQP 317
Query: 500 -KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIAL 558
K + PIICICND Y+ L+ L + +RFRKP Q I RL +I + E L + L
Sbjct: 318 AKPLRRPIICICNDLYAPALRPLRQFARIVRFRKPPTQFIVARLREICDREKLSADTRVL 377
Query: 559 EELADRVNGDIRMAINQLQ 577
L + GD+R +N LQ
Sbjct: 378 TTLVELTGGDVRSCLNTLQ 396
>gi|6323724|ref|NP_013795.1| Ctf18p [Saccharomyces cerevisiae S288c]
gi|1705792|sp|P49956.1|CTF18_YEAST RecName: Full=Chromosome transmission fidelity protein 18
gi|807960|emb|CAA89224.1| Chl12p [Saccharomyces cerevisiae]
gi|190408309|gb|EDV11574.1| protein CHL12 [Saccharomyces cerevisiae RM11-1a]
gi|207342351|gb|EDZ70138.1| YMR078Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256273480|gb|EEU08414.1| Ctf18p [Saccharomyces cerevisiae JAY291]
gi|259148652|emb|CAY81897.1| Ctf18p [Saccharomyces cerevisiae EC1118]
gi|285814081|tpg|DAA09976.1| TPA: Ctf18p [Saccharomyces cerevisiae S288c]
gi|323336279|gb|EGA77550.1| Ctf18p [Saccharomyces cerevisiae Vin13]
gi|323347164|gb|EGA81439.1| Ctf18p [Saccharomyces cerevisiae Lalvin QA23]
gi|365763804|gb|EHN05330.1| Ctf18p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392297238|gb|EIW08338.1| Ctf18p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 741
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 135/313 (43%), Gaps = 57/313 (18%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE---- 397
S W EK+RPK ++VGN++ +++ WL W + ++ + E
Sbjct: 112 SDTLWVEKWRPKKFLDLVGNEKTNRRMLGWLRQWTPAVFKEQLPKLPTEKEVSDMELDPL 171
Query: 398 -----KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANS 452
K +L G PG+GKT+ A ++ + GF E+NASD R G
Sbjct: 172 KRPPKKILLLHGPPGIGKTSVAHVIAKQSGFSVSEINASDERA----------GPMVKEK 221
Query: 453 IKELVSNEALSANMDRSKHPKTVLIMDEVDG-MSAGDRGGIADLIAS-IKISKI------ 504
I L+ N N L+ DE+DG + +G + D++ S IK +
Sbjct: 222 IYNLLFNHTFDTN-------PVCLVADEIDGSIESGFIRILVDIMQSDIKATNKLLYGQP 274
Query: 505 -----------------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
PIICICN+ Y+ L+ L +C + ++P + +RL I +
Sbjct: 275 DKKDKKRKKKRSKLLTRPIICICNNLYAPSLEKLKPFCEIIAVKRPSDTTLLERLNLICH 334
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL------SVIKYDDIRQRLLSSAKD 601
E + + A+ +L D GD+R IN LQ+++ ++ + K + SS KD
Sbjct: 335 KENMNIPIKAINDLIDLAQGDVRNCINNLQFLASNVDSRDSSASDKPACAKNTWASSNKD 394
Query: 602 EDISPFTAVDKLF 614
IS F V++LF
Sbjct: 395 SPISWFKIVNQLF 407
>gi|42559517|sp|Q975D4.2|RFCL_SULTO RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|342306207|dbj|BAK54296.1| replication factor C large subunit [Sulfolobus tokodaii str. 7]
Length = 440
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 128/272 (47%), Gaps = 34/272 (12%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W KYRPKT NE+ + K+L W+ W GK KA +L
Sbjct: 3 LQWFLKYRPKTLNEVENEEDAKKELVEWIESW----------LKGKPNY-----KAVLLY 47
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A+ + + + E+NASDSR N N I+ + +++
Sbjct: 48 GPPGVGKTTLAEALARDYKLELFEMNASDSR--------------NLNDIRTMAERASIT 93
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ K ++++DEVDG++A D G I ++ I +K PII ND + L+ L
Sbjct: 94 GTIFGIKG--KLILLDEVDGLNARADAGAIDAILELINKTKYPIILTANDPWDPSLRPLR 151
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N + ++ K + + L +I AE + + AL+ + ++ GD R AIN LQ ++
Sbjct: 152 NAVKMIELKRLTKYPLKRILKKICEAEKITCEDEALDFIIEQSEGDARYAINMLQGVAEG 211
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ D + L KD ++ PF A+ +F
Sbjct: 212 YGRVTLDMAKN--LVRRKDRELDPFEALRGVF 241
>gi|340055027|emb|CCC49335.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 1007
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 117/262 (44%), Gaps = 32/262 (12%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL--DTGTKRNGKKQNDASAEKA-- 399
L W KY PK +E++ + +L W+ W+ D T + A
Sbjct: 194 LLWVVKYTPKRFHELLSDDSTNLKLLRWMKSWDAYVFRNDAATPAEAALMESSGPSPARP 253
Query: 400 ----AILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR--GKADAKISKGI-------- 445
AIL G PG+GKTT A ++ G++ IE+NAS R + ++ I +
Sbjct: 254 DDRLAILVGPPGVGKTTLAHVLASHCGYETIEINASVDRTTSRIESMIQLAVAPCRGRHR 313
Query: 446 --------GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIA 497
GG ++++E A S ++ S LI+DE+DG+++ + +
Sbjct: 314 VPGPSNPSGGKGTSTLREATQGGASSVSLLDSLLTPKCLIIDEMDGIAS----NVGAFLL 369
Query: 498 SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKP-RKQEIAKRLMQIANAEGLEVNEI 556
I P+IC+CND Y L+ L C + P R Q + RL +IA E + + +
Sbjct: 370 KQDI-HCPVICLCNDYYVPALRPLRQQCRFVLHVPPIRPQRLLARLSEIAERENIRASSV 428
Query: 557 ALEELADRVNGDIRMAINQLQY 578
AL EL NGD+R +N +Q+
Sbjct: 429 ALAELVRASNGDVRCCLNTMQF 450
>gi|328856117|gb|EGG05240.1| hypothetical protein MELLADRAFT_36957 [Melampsora larici-populina
98AG31]
Length = 572
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 139/312 (44%), Gaps = 47/312 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL----DTGTKRNGKKQNDASA----- 396
WT++YRP +++G++++ + +WL W++ ++R K+ A A
Sbjct: 4 WTDRYRPTKFIDLIGDERVFRSAMSWLKEWDQCVFKHERSAASRRKVAKKRSAQAAFAAS 63
Query: 397 -----------------EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADA 439
EK +L G+PG+GKTT A ++ Q G+ +E+NASD R
Sbjct: 64 AKGPATNFTPDPLGRPQEKVLLLCGAPGLGKTTMAHVLAQQAGYDIVEINASDDR--TTK 121
Query: 440 KISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG----GIADL 495
+++ I +A + L S M + T +I+DE+DG + G G + L
Sbjct: 122 VVTERI--KSALETRTLDSGARQGGGMTFKDNRPTCVIIDEIDGAAGGSDGGFVKALVKL 179
Query: 496 I-------------ASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRL 542
I A IK PIICICND Y+Q L+ L + +RF P I KRL
Sbjct: 180 ITDGLLYPLARGKKAEIKPLVRPIICICNDLYAQTLRPLRSIARIIRFATPTPMTIIKRL 239
Query: 543 MQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDE 602
I + E L+ + L L +GD+R +N LQ + SV IR + KD
Sbjct: 240 QTICDMEKLKADLRNLTFLVKIASGDLRSCLNTLQAVQSQSSVASESAIRSAAIVGMKDV 299
Query: 603 DISPFTAVDKLF 614
S + + KLF
Sbjct: 300 GTSVRSILSKLF 311
>gi|70606692|ref|YP_255562.1| replication factor C large subunit [Sulfolobus acidocaldarius DSM
639]
gi|449066915|ref|YP_007433997.1| replication factor C large subunit [Sulfolobus acidocaldarius N8]
gi|449069187|ref|YP_007436268.1| replication factor C large subunit [Sulfolobus acidocaldarius
Ron12/I]
gi|73914010|sp|Q4JAB1.1|RFCL_SULAC RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|68567340|gb|AAY80269.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
gi|449035423|gb|AGE70849.1| replication factor C large subunit [Sulfolobus acidocaldarius N8]
gi|449037695|gb|AGE73120.1| replication factor C large subunit [Sulfolobus acidocaldarius
Ron12/I]
Length = 437
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 130/272 (47%), Gaps = 34/272 (12%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W KYRPK+ E+ ++ ++L W+ W N KA +L
Sbjct: 3 LQWFLKYRPKSLQEVENQDEVKEELKKWIESW---------------LNGEPTAKAVLLY 47
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A+ + + + +E+NASDSR N IK++ ++S
Sbjct: 48 GPPGVGKTTLAEALARDYKLELLEMNASDSR--------------NLRDIKDVAERASIS 93
Query: 464 ANMDRSKHPKTVLIMDEVDGM-SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
++ K ++++DE+DG+ S D G I ++ I+ +K P+I ND + L+SL
Sbjct: 94 GSLFGIKG--KIILLDEIDGIYSRADAGAIPAILELIEKTKYPVILTANDPWDPSLRSLR 151
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N + ++ K + + L +I E + + AL+ + ++ GD R IN LQ ++
Sbjct: 152 NAVKMIELKRLGKYPLKRLLKRICEKEKIVCIDEALDHIIEQSEGDARYCINMLQGIAEG 211
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ D++++ L KD ++ PF + +F
Sbjct: 212 YGKVTLDNVKE--LVRRKDRELDPFETLRDVF 241
>gi|410074367|ref|XP_003954766.1| hypothetical protein KAFR_0A01930 [Kazachstania africana CBS 2517]
gi|372461348|emb|CCF55631.1| hypothetical protein KAFR_0A01930 [Kazachstania africana CBS 2517]
Length = 780
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 140/309 (45%), Gaps = 57/309 (18%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASA--------- 396
W EK+RPK+ ++VGN++ +++ WL W+ +K ++
Sbjct: 134 WVEKWRPKSFIDLVGNEKTNRRILGWLRQWSYAVFKEQLPELPQKTHNNEVTVDMDPLQR 193
Query: 397 --EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIK 454
+K ++ G PG+GKT+ A +V + GF E+NASD R +K
Sbjct: 194 PNKKILLIHGPPGIGKTSVAHVVTKQAGFSVAEINASDERA--------------GQFVK 239
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDG-MSAGDRGGIADLI-----ASIKISKI---- 504
+ V N N S P LI DE+DG + +G + D+I A+ ++ +
Sbjct: 240 DKVHNTLF--NHTFSDSP-VCLIADEIDGSVESGFIRVLIDIINKDNKATNRLRYLANTQ 296
Query: 505 ---------------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAE 549
PII ICN+ Y+ L+ L +C + F++P + +RL I + E
Sbjct: 297 TKSKDKKRRKNLLVRPIIAICNNLYAPALEKLKQHCEIISFKRPSDNALQERLEHICSKE 356
Query: 550 GLEVNEIALEELADRVNGDIRMAINQLQYMSL---SLSVIKYD-DIRQRLLSSAKDEDIS 605
L+V + +L D GD+R IN LQ+M+ SL+ I + + ++ KD IS
Sbjct: 357 RLDVPIKTINDLIDLAQGDVRNCINNLQFMATNSGSLNQISPEKNDSSSWDTNGKDISIS 416
Query: 606 PFTAVDKLF 614
F V+++F
Sbjct: 417 WFKLVNQIF 425
>gi|71017291|ref|XP_758970.1| hypothetical protein UM02823.1 [Ustilago maydis 521]
gi|46098636|gb|EAK83869.1| hypothetical protein UM02823.1 [Ustilago maydis 521]
Length = 1104
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 128/292 (43%), Gaps = 76/292 (26%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE--------------------------KF 379
W +K+RP E++G++++ +++ WL W+E F
Sbjct: 355 WVDKHRPAKFTELLGDERVHREVLGWLKEWDECVFKRKNHRKERHRQYIQSKYGFSDNGF 414
Query: 380 LDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADA 439
D G++ + K E+ ++SG PG+GKTT A ++ G+ E+NASD+R
Sbjct: 415 GDKGSEHSWKDPYGRPKERIMMISGPPGLGKTTLAHVIGAHAGYNVYELNASDAR----- 469
Query: 440 KISKGIGGSNANSIKELVSNEALSANMDRSKHPK-TVLIMDEVDG--------------- 483
+A ++++++ S ++ K P+ T++++DE+DG
Sbjct: 470 ---------SAGAVEDVIKMALESGSL---KDPRPTLVVIDEIDGATGGGGGASGESHGF 517
Query: 484 ---------MSAGDRGGIADLIA--------SIKISKIPIICICNDRYSQKLKSLVNYCS 526
M G +A L A K PIICICND Y+ L+ L
Sbjct: 518 IRALVRLVEMGKGAGPKVAGLGARGKKQQRKGFKPLLRPIICICNDLYAPSLRPLRPISK 577
Query: 527 DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+RF KP + KRL ++ AE L V L LA+ NGDIR +N L++
Sbjct: 578 LIRFHKPPTNLVVKRLREVCEAEALSVEARGLSLLAELTNGDIRSCLNALEF 629
>gi|345481692|ref|XP_001603491.2| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Nasonia vitripennis]
Length = 912
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 135/303 (44%), Gaps = 54/303 (17%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDAS---------- 395
W +KYRPK E++ ++ + + L WL W++ D + KK N S
Sbjct: 254 WVDKYRPKRYVELLSDENVNRSLLYWLKLWDKVVFDREPTVHRKKSNVVSKFRNKFIQKE 313
Query: 396 -----------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG 444
++ A+L+G PG+GKTT A + + G+ +E+NASD RG +
Sbjct: 314 DIPDHDSKGFPTQRIALLTGPPGLGKTTLAHVAARHAGYNIVELNASDDRGPEAFR---- 369
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--------RGGIADLI 496
+ L+++ + A +D+ + P LI+DE+DG G +A
Sbjct: 370 ---------EALLASTQMRALIDQDRRP-NCLILDEIDGAPTASIELLLKFIHGKLAPKG 419
Query: 497 ASIKISKI------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEG 550
+ K K PIICICND Y+ L+ L + + + +RL +I EG
Sbjct: 420 KNAKPGKQSDGCRRPIICICNDLYTPSLRPLRAMALVINVPEITPSNLTERLSEIMRKEG 479
Query: 551 LEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIK-----YDDIRQRLLSSAKDEDIS 605
L+V+ L +LA++ D+R + LQY ++I+ D+R+ L S K+
Sbjct: 480 LQVDSRLLLQLAEKSACDVRACLGILQYTGGGANMIQNLALGLKDMRKGLFDSWKELLQV 539
Query: 606 PFT 608
P T
Sbjct: 540 PMT 542
>gi|341582781|ref|YP_004763273.1| replication factor C large subunit [Thermococcus sp. 4557]
gi|340810439|gb|AEK73596.1| replication factor C large subunit [Thermococcus sp. 4557]
Length = 498
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 160/351 (45%), Gaps = 55/351 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP+ +EIVG + + Q+ W+ W E GK +KA IL+G
Sbjct: 7 WVEKYRPRRLDEIVGQTKAIDQVKAWIGAWLE----------GKPPK----KKALILAGP 52
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG GKTT + + GF+ IE+NASD R KI + + +
Sbjct: 53 PGTGKTTTVYALAREYGFEVIELNASDER--TYEKIERYVQAAY---------------T 95
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
MD + ++ +DE D + IA LI ++ PII N Y + + + +
Sbjct: 96 MDILGKRRKLIFLDEADNIEPTGAREIAKLIDR---ARNPIIMSAN-HYWEVPREIRSRS 151
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV 585
+ +++ +++I K L +I + EG V + L ++A GD+R A+N LQ ++
Sbjct: 152 QIVEYKRLTQRDIIKALARILHHEGKRVPKELLYDIAKHAGGDLRAAVNDLQ----TVVT 207
Query: 586 IKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN- 644
+D Q L + +D + S F A+ ++F + K + + M +L+ I EN
Sbjct: 208 GGVEDAAQVL--AYRDTEKSVFQALAQIFATDNAKKARMATLGVDMFPHELLQ-WIDENL 264
Query: 645 -YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
Y+ Y+P IARA E++S DI+ + +R + L + ++
Sbjct: 265 PYVYYKPED-----------IARAYEALSRADIYLGRAQRTGNYGLWKYAT 304
>gi|388853899|emb|CCF52397.1| related to CTF18-Chromosome Transmission Fidelity factor [Ustilago
hordei]
Length = 1114
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 130/304 (42%), Gaps = 80/304 (26%)
Query: 336 GQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKR--------- 386
+ + +S W +K+RP E++G++++ +++ WL W+E R
Sbjct: 357 AEGVNGTSQMWVDKHRPAKFTELLGDERVHREVLGWLKEWDECVFKRKNHRKERHRQYIQ 416
Query: 387 ---------NGKKQNDA--------SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429
NG +D E+ ++SG PG+GKTT A ++ G+ E+N
Sbjct: 417 AKYSYSDHANGSNGSDHIWKDPYGRPKERIIMISGPPGLGKTTLAHVIGAHAGYNVYELN 476
Query: 430 ASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK-TVLIMDEVD------ 482
ASD+R G+ + IK + + +L K P+ T++++DE+D
Sbjct: 477 ASDAR----------TSGAVEDVIKMALESGSL-------KDPRPTLVVIDEIDGATGGG 519
Query: 483 --------------------GMSAGDRGGIADLIASIKISKI--------PIICICNDRY 514
G +AG + A L A K + PIICICND Y
Sbjct: 520 GGASGESHGFVRALVRLVEMGKAAGPKA--AGLAARGKKQQRKGYKPLLRPIICICNDLY 577
Query: 515 SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAIN 574
+ L+ L +RF KP + KRL ++ AE L V L LAD NGDIR +N
Sbjct: 578 APSLRPLRPMAKLIRFNKPPTNVVVKRLREVCEAESLSVEARGLSLLADLTNGDIRSCLN 637
Query: 575 QLQY 578
L++
Sbjct: 638 ALEF 641
>gi|6474256|dbj|BAA87235.1| Hypothetical nuclear protein [Schizosaccharomyces pombe]
Length = 185
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 70/112 (62%)
Query: 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRK 532
+ VLIMDE+DGMS+GDRGG+ L IK S IPIICICNDR KL+ L DLRFR+
Sbjct: 21 RLVLIMDEIDGMSSGDRGGVGQLNMIIKKSMIPIICICNDRAHPKLRPLDRTTFDLRFRR 80
Query: 533 PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
P + R+M IA EGL+++ A+++L D+R IN L LS S
Sbjct: 81 PDANSMRSRIMSIAYREGLKLSPQAVDQLVQGTQSDMRQIINLLSTYKLSCS 132
>gi|328785578|ref|XP_001122463.2| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Apis mellifera]
Length = 875
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 119/281 (42%), Gaps = 53/281 (18%)
Query: 338 NIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDA--- 394
NI Q W +KY+P++ E++ ++ + + L WL W++ + + KK N
Sbjct: 240 NIAQDDELWVDKYKPRSYIELLSDESVNRDLLHWLKLWDKIVFNRNYTQKKKKLNSTLNR 299
Query: 395 --------------------SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434
++ +LSG PG+GKTT A L + G+ IE+NASD R
Sbjct: 300 FKNRKFIDEKTFKEVDNKGFPIQRIVLLSGPPGLGKTTLAHLAAKHAGYNVIEINASDER 359
Query: 435 GKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIAD 494
+ + L+++ + A M P LI+DE+DG A +
Sbjct: 360 SPDTFR-------------QILLASTQMKAVMGSDPRP-NCLILDEIDGAPAASIDLLLK 405
Query: 495 LIA----------------SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEI 538
I S I PIICICN+ Y+ L++L + + +
Sbjct: 406 FIQGKLIPKGKKDKMNTDKSSNICHRPIICICNEPYTPSLRALRTVALIISVPEVSSTRL 465
Query: 539 AKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
A RLM+I+ E L+VN AL L + DIR + LQYM
Sbjct: 466 ADRLMEISQKENLKVNPDALLTLVEISGCDIRSCLGALQYM 506
>gi|406607430|emb|CCH41221.1| Chromosome transmission fidelity protein 18 [Wickerhamomyces
ciferrii]
Length = 741
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 148/332 (44%), Gaps = 68/332 (20%)
Query: 322 IERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLD 381
++R+K S ++ + I Q+++ W EK+RPK+ +++GN+ +++ W+ W+ D
Sbjct: 133 VKRLKEAPS-SRNQDSYIPQNNILWAEKWRPKSFFDLLGNEATNRRILKWIKDWSRVVFD 191
Query: 382 TG----TKRNGKKQNDAS------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431
T + Q+ + ++K ++ G PG+GKTT A ++ + G++ +EVNAS
Sbjct: 192 QNLKPITTEDSNPQSKFTDPFGRPSKKILLIHGPPGLGKTTVAHVIAKQAGYEIMEVNAS 251
Query: 432 DSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG 491
D R +++ ++N S N LI DEVDG A + G
Sbjct: 252 DERS--------------GQRVRDKINN---SLNSQTFSGKPVCLIADEVDG--AAEFGF 292
Query: 492 IADLIASI-----------------------------KISKIPIICICNDRYSQKLKSLV 522
+ L+ I K PII ICND Y+ L+ L
Sbjct: 293 VKVLLDLINEDSRAVYKYQNSESSKFKEDNGKKKKQPKFLLRPIIAICNDLYAPSLEKLR 352
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
+ F+ P ++E+ RL I E + + L+E+ N DIR +N LQ+
Sbjct: 353 AQSEIINFKAPTERELRDRLRDICKHEKINITNQQLQEIVLLANYDIRSCLNILQFGG-- 410
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ +D+R+ KD +S F+ V+++F
Sbjct: 411 -GLNNSNDLRK------KDSQVSWFSIVNEIF 435
>gi|300710704|ref|YP_003736518.1| replication factor C large subunit [Halalkalicoccus jeotgali B3]
gi|448295034|ref|ZP_21485107.1| replication factor C large subunit [Halalkalicoccus jeotgali B3]
gi|299124387|gb|ADJ14726.1| replication factor C large subunit [Halalkalicoccus jeotgali B3]
gi|445585004|gb|ELY39308.1| replication factor C large subunit [Halalkalicoccus jeotgali B3]
Length = 482
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 143/325 (44%), Gaps = 46/325 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE YRP T +E+ GN + W W + +KA IL GS
Sbjct: 4 WTETYRPSTLSEVRGNDKARDAFREWAESWEDH------------------QKAVILHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + LG+ IE+NASD R A+ +K + A S
Sbjct: 46 PGVGKTSAAHALANDLGWPTIELNASDQR--------------KADIVKRIAGEAAKSGT 91
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + ++I+DE D D GG + IK + P++ I N+ Y ++L N
Sbjct: 92 LTGGTAGRRLVILDEADNFHGNVDYGGSRAVTDVIKSANQPVVLIANEFYDMS-QNLRNS 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + FR K+ I L I EG+E ALE +A+ +GD+R A+N LQ ++
Sbjct: 151 CETVEFRDVSKRSIVPVLRDICRQEGIEFEAEALEAIAENTDGDLRSAVNDLQALAERED 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
+ + +++ +D F +D++ G + + ++ + DL+ N
Sbjct: 211 RL----TAEAVVTGERDRTKGIFDFLDEVIKEKGAQEALYASYEVDETPDDLI------N 260
Query: 645 YI--NYRPSSAGRDEVKRLSLIARA 667
+I N AGR+ S +ARA
Sbjct: 261 WIEDNVPKDFAGRELADAYSALARA 285
>gi|339239633|ref|XP_003381371.1| ATPase, AAA family [Trichinella spiralis]
gi|316975602|gb|EFV59013.1| ATPase, AAA family [Trichinella spiralis]
Length = 778
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 131/313 (41%), Gaps = 72/313 (23%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE--- 397
Q W+ KYRP+T +++ + + L TW+ W+ + K N Q D
Sbjct: 204 QCGQLWSSKYRPRTYIDLLSDDGSNRALLTWMKLWDTCVFNNKPKLNTLHQVDRKKLLTK 263
Query: 398 ----------------------------KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429
K A+L GSPG+GKTT A ++ + G+ E+N
Sbjct: 264 KKQQKLLFPTTSGDGSKPELDSLKRPLYKIALLWGSPGIGKTTLAHVIAKHCGYYVHEMN 323
Query: 430 ASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR 489
ASD R DA SK + S ++ +D + P V+I DE+DG
Sbjct: 324 ASDDRS-LDA-FSKHLENS-----------LLMTGTLDANPKPHCVVI-DEIDGAPLPSV 369
Query: 490 GGIADLIASIK--------ISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
+ +L+ + I + PI+CICND Y+ L+ L ++
Sbjct: 370 NYLVNLVKGVASGKKSRKIIVRRPIVCICNDLYAPSLREL------------------RK 411
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKD 601
+ I + E L ++ AL+ L + DIR IN LQ++ I+YDDI QRL KD
Sbjct: 412 IALICSEEMLTADQSALDLLCQKAENDIRSCINTLQFLKSKTDHIRYDDI-QRLPVGQKD 470
Query: 602 EDISPFTAVDKLF 614
S F+ ++F
Sbjct: 471 LKKSMFSVWREIF 483
>gi|383866003|ref|XP_003708461.1| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Megachile rotundata]
Length = 885
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 137/305 (44%), Gaps = 54/305 (17%)
Query: 311 EAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHT 370
EA+ A +T +P + +N + W +KY+P+T E++ ++ + + L
Sbjct: 222 EAEEIIAENVKHASFETFENPVAKAIENDE----LWVDKYKPRTYIELLSDESVNRNLLH 277
Query: 371 WLAHWNEKFLD-----------TGTKRNGKKQNDASAE---------KAAILSGSPGMGK 410
W+ W++ + RN K +N+ S E + +LSG PG+GK
Sbjct: 278 WIKLWDKVVFNRNYVQSRKGKLQSIFRNKKFKNENSEEVDNKGFPTQRVVLLSGPPGLGK 337
Query: 411 TTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSK 470
TT A L + G+ +E+NASD R + + L+++ + A M
Sbjct: 338 TTLAHLAAKHAGYNVVEINASDERSPDAFR-------------QVLLASTQMKAVMGSDP 384
Query: 471 HPKTVLIMDEVDGMSAGD-------------RGGIADLIASIKISKI---PIICICNDRY 514
P LI+DE+DG A G D + + K S + P+ICICN+ Y
Sbjct: 385 RP-NCLILDEIDGAPAASIDLLLKFVQGKLTVKGKKDKMKTDKQSNVCHRPVICICNEPY 443
Query: 515 SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAIN 574
+ L++L + + +A+RLM+I++ E L+VN AL +L + DIR +
Sbjct: 444 TPSLRALRAIALIIPVPEVSPARLAERLMEISHKEHLKVNPDALLKLVEISGCDIRSCLG 503
Query: 575 QLQYM 579
LQYM
Sbjct: 504 ALQYM 508
>gi|328703928|ref|XP_001944185.2| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Acyrthosiphon pisum]
Length = 926
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 108/437 (24%), Positives = 173/437 (39%), Gaps = 95/437 (21%)
Query: 322 IERMKTVASPAKRKGQNIQQSSL-----TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN 376
IE + + S R G +I +S+ W +KY+P +++ ++ + L WL W+
Sbjct: 246 IENNEAIRSGVNRNGVSILDNSIDNTAELWVQKYKPNRYLDLLSDESTNRMLLQWLKIWD 305
Query: 377 E-----------KFLDTGTKRNGKK-------------QNDASAEKAAILSGSPGMGKTT 412
+ K +D K G K +N+ K A+L G PG+GKTT
Sbjct: 306 KVVFNKEVNKKRKVIDVYDKSAGNKFTKKNQTLDEGLDENNCPKYKLALLCGPPGLGKTT 365
Query: 413 AAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHP 472
A LV + G+ +E+NASD R K ++L + + + M P
Sbjct: 366 LAHLVARQAGYNVVEMNASDDRNLTCFK-------------RQLEATTQMCSVMSNDSRP 412
Query: 473 KTVLIMDEVDGMSAGDRGGIADLIASIK---------------ISKIPIICICNDRYSQK 517
L++DE+DG + + I K PIICICND Y
Sbjct: 413 -NCLVLDEIDGAPVASIEFLIKFATEKRATRKKKTDKKEEKSFILKRPIICICNDVYVPA 471
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
L++L L F + +RLM+I++ E ++ + A+ L + N DIR ++ L
Sbjct: 472 LRNLRQNAFVLNFPPTSSVRLVERLMEISSYENIKTDMGAMTALGTKTNNDIRSCLSTLS 531
Query: 578 YM---SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF----------------GFNG 618
S+ LS +K +I AKD FT ++F GF+
Sbjct: 532 CFRNQSVHLSHVKNANI------GAKDMQKGLFTVWQEIFQIKKSCFENNPNSTSDGFSS 585
Query: 619 GKLRMDERID------LSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESIS 672
M +RI+ S D + + I ENY+ +P + L+ IA E
Sbjct: 586 QNNVMKDRINSVLKTVQSYGDYEKLCQGIFENYLILKPKDSS------LTNIAEGLEWFC 639
Query: 673 DGDIFNVQIRRNQQWQL 689
+ D I +Q + L
Sbjct: 640 NFDKMMHVINSSQNYSL 656
>gi|392595577|gb|EIW84900.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 701
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 135/301 (44%), Gaps = 47/301 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN------------EKFLDTGTKRNGKKQND 393
W ++YRP E++GN+++ ++ W+ W+ ++F + N +
Sbjct: 45 WVDRYRPLRFTELLGNERVARETMAWVKQWDWCVFGKRKYKGKKRFREDEENENPDDEFR 104
Query: 394 ASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSI 453
EK ++SG PG+GKTT A +V G++ +E+NASD+R +A I
Sbjct: 105 RPREKLLLISGPPGLGKTTLAHVVAAQAGYEVMEINASDAR--------------SAQVI 150
Query: 454 KELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG---DRGGIADLIASIKISKI------ 504
+ + S + S P ++++DE+DG + G + + S+ +
Sbjct: 151 DDRLKPALESGSAIGSNKP-VLVVIDEIDGATGGGGDNTSSFVQKLVSLTYDQPKNKRKK 209
Query: 505 ----------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVN 554
PIICICND + L L + +R +P I KRL Q+ EGL+ +
Sbjct: 210 QDKGKRPLLRPIICICNDINAHSLAKLRPHALQIRCTRPADIHIVKRLRQVCEMEGLKAD 269
Query: 555 EIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
AL L GD+R +N LQ++ S S + + +R + K+ D + + ++ LF
Sbjct: 270 SRALSTLVGIAKGDLRGCLNTLQFIK-SRSEDVTEPLIRRSTAGMKEADTTANSVLNDLF 328
Query: 615 G 615
Sbjct: 329 A 329
>gi|254571541|ref|XP_002492880.1| Subunit of a complex with Ctf8p that shares some subunits with
Replication Factor C [Komagataella pastoris GS115]
gi|238032678|emb|CAY70701.1| Subunit of a complex with Ctf8p that shares some subunits with
Replication Factor C [Komagataella pastoris GS115]
gi|328353107|emb|CCA39505.1| Chromosome transmission fidelity protein 18 homolog [Komagataella
pastoris CBS 7435]
Length = 747
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 148/322 (45%), Gaps = 55/322 (17%)
Query: 325 MKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGT 384
++++ P ++ ++ + S+ W EK+RP+ E+ GN++ + L WL W++ G
Sbjct: 106 LQSMVEPTQQPKRSKRTSAELWAEKWRPRNFLEVAGNERTNRHLLNWLRKWSKA--AHGE 163
Query: 385 KRNGKKQN----DASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK 440
++++ +K ++ G PG GKTT A ++ + LG++ E+NASD R + +
Sbjct: 164 PLPSEEESVDPLQRPQKKILLIHGPPGAGKTTVAHIIAKQLGYEVAEINASDERAGPEVR 223
Query: 441 ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI- 499
+ +++ ++ S K P LI DEVDG S + G I L+ +
Sbjct: 224 ----------EKVHTVLTTQSFS------KKP-VCLIADEVDGSS--EHGFIKVLLDIVN 264
Query: 500 ------------------------KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRK 535
K+ PII ICND Y++ L L + FRK
Sbjct: 265 NDAKSTKSLHYSNLSKDKKARLRSKLLTRPIIAICNDVYTRSLDKLRAVSEIVAFRKSSI 324
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRL 595
+ + +RL I +AE ++++E L + D + D+R ++N LQ+ L I D +R
Sbjct: 325 RSVKERLKLICDAEKIDISERNLNAIIDITDCDLRSSLNLLQFQGDQLQNILGDGDTKR- 383
Query: 596 LSSAKDEDISPFTAVDKLFGFN 617
KD +S F+ KLF N
Sbjct: 384 ----KDSQLSWFSIALKLFKRN 401
>gi|322785987|gb|EFZ12603.1| hypothetical protein SINV_09545 [Solenopsis invicta]
Length = 888
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 115/450 (25%), Positives = 188/450 (41%), Gaps = 98/450 (21%)
Query: 305 KSPQNIEAKSTSAPKA-----PIERMKTVASPAKRKGQNIQQSSLT-------------- 345
++PQN + K ++ P A P +++KT A + Q + + SL+
Sbjct: 195 RNPQN-DVKQSTRPIANLFSTPYKQLKTQAKEIVK--QELSKQSLSSDLCSTKNIINDEL 251
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLD---TGTKRN-----GKKQND---- 393
W +KYRP++ E++ ++ + +Q WL W++ + T KR GK+ ND
Sbjct: 252 WVDKYRPRSYLELLSDETVNRQFLHWLKLWDKIVFNRNITKPKRKQAPMFGKRNNDDENS 311
Query: 394 --------ASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI 445
++ A+LSG PG+GKTT A + + G+ +E+NASD R +
Sbjct: 312 IEEVDSKGYPIKRIALLSGPPGLGKTTLAHIAAKHAGYNVVEINASDERSPETFR----- 366
Query: 446 GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLI--------- 496
+ L+++ + A M P LI DE+DG A + I
Sbjct: 367 --------QILLASTEMKAVMGADPRP-NCLIFDEIDGAPAASIELLLKFIQGKLLLKSK 417
Query: 497 --------ASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
S P++CICN+ Y+ L++L + + +A+RLM +A
Sbjct: 418 KRKGQSEKTSTDGCTRPVVCICNEPYTPSLRALRAAAVIIPVPEVSPLRLAERLMDLARK 477
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQYM-------SLSLSVIKYDDIRQRLLSSAKD 601
E L V+ L ++A+R D+R I LQYM +LSL++ D R+ L S +
Sbjct: 478 EKLNVDFGDLVKMAERSCCDVRACIGALQYMGSANLKDNLSLNL---KDTRKNLFDSWRS 534
Query: 602 EDISPFTAVDKLFGFNGGKLRMDERID--LSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
P GG L + ERI L++ + L Q + NY P R
Sbjct: 535 ILTIPMNK--------GGILPIPERIQNILTIVQNGEMEKLAQGIFHNY-PEVCDR---- 581
Query: 660 RLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+L ++ + E D+ I Q W L
Sbjct: 582 KLDNVSLSLEWFQFYDLVTSLIAHKQIWSL 611
>gi|14590059|ref|NP_142123.1| replication factor C large subunit [Pyrococcus horikoshii OT3]
gi|42559336|sp|O57853.1|RFCL_PYRHO RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|3256499|dbj|BAA29182.1| 468aa long hypothetical replication factor C subunit [Pyrococcus
horikoshii OT3]
Length = 468
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 158/350 (45%), Gaps = 55/350 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP+ +EIV +Q ++++ W+ W + +KA +L+G
Sbjct: 6 WIEKYRPRKLSEIVNQEQALEKVRAWIESW--------------LHGNPPKKKALLLAGP 51
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG GKTT + F+ IE+NASD R N I V +
Sbjct: 52 PGSGKTTTVYALAHEYNFEVIELNASDER--------------TYNKIARYVQA---AYT 94
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
MD + ++ +DE D + IA LI ++ PII N Y + K + +
Sbjct: 95 MDIMGKRRKIIFLDEADNIEPSGAPEIAKLIDK---ARNPIIMAAN-HYWEVPKEIRDRA 150
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV 585
+ +++ ++++ L++I EG+ V + L E+A R +GD+R AIN LQ ++
Sbjct: 151 ELVEYKRLNQRDVISALVRILKREGITVPKEILTEIAKRSSGDLRAAINDLQ----TIVA 206
Query: 586 IKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN- 644
Y+D + L + +D + + F ++ +F + K ++L MS PD L + EN
Sbjct: 207 GGYEDAKYVL--AYRDVEKTVFQSLGMVFSSDNAKRAKLALMNLDMS-PDEFLLWVDENI 263
Query: 645 -YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
++ +P +ARA E+IS DI+ + +R + L + +
Sbjct: 264 PHMYLKPEE-----------MARAYEAISRADIYLGRAQRTGNYSLWKYA 302
>gi|254585195|ref|XP_002498165.1| ZYRO0G03806p [Zygosaccharomyces rouxii]
gi|238941059|emb|CAR29232.1| ZYRO0G03806p [Zygosaccharomyces rouxii]
Length = 706
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 128/269 (47%), Gaps = 41/269 (15%)
Query: 335 KGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN----EKFLDTGTKRNGKK 390
K N+ + L W EK+RP+ ++VGN++ +++ WL W+ ++ L N
Sbjct: 99 KASNLHDNEL-WVEKWRPRRFIDLVGNEKTNRRVLRWLRQWSPAVFQESLPQPLYENEFD 157
Query: 391 QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNA 450
A++ +L G PG+GKT+ A ++ + G+ E+NASD RG
Sbjct: 158 PLQRPAKRILLLHGPPGIGKTSVAHVIAKQAGYTVAEINASDERG--------------G 203
Query: 451 NSIKELVSNEALSANMDRSKHPKTVLIMDEVDG-MSAGDRGGIADLIASI---------- 499
+++ + N + ++S L+ DE+DG + +G + D++ S
Sbjct: 204 WQVRDKILNTLFNHTFNQSP---VCLVADEIDGTLESGFIKVLIDVVNSDARATRKMGVP 260
Query: 500 --------KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGL 551
K+ PII +CN+ Y+ L+ L C + F++P + +RL I EG+
Sbjct: 261 KKGKKNRDKLLLRPIIAVCNNLYAPALEKLKPLCEIVPFKRPSDFSLNERLDTICRVEGV 320
Query: 552 EVNEIALEELADRVNGDIRMAINQLQYMS 580
+++ +L++L D GD+R +N LQ+ +
Sbjct: 321 KIHSKSLKDLIDLSQGDVRNCVNNLQFWA 349
>gi|392567141|gb|EIW60316.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 667
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 136/299 (45%), Gaps = 54/299 (18%)
Query: 314 STSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLA 373
++ A K +E M+ + PA+ SS W ++Y+P E++G+ ++ +++ +W+
Sbjct: 7 ASVATKLIVEDMQQASKPAQ---PATASSSALWVDRYKPNRFTELLGDDRVHREVLSWVK 63
Query: 374 HWNEKFLDTGTKRNGKK-QNDASAE----------KAAILSGSPGMGKTTAAKLVCQMLG 422
W+ TG R K+ + D E K +LSG PG+GKTT A +V G
Sbjct: 64 EWDSCVFGTGKARGKKRARGDEDGENLDEWRRPKEKLLLLSGPPGLGKTTLAHIVAAHAG 123
Query: 423 FQAIEVNASDSRGK--ADAKISKGI-GGSNANSIKELVSNEALSANMDRSKHPKTVLIMD 479
++A EVNASD+R D +I + GS S K ++ +++D
Sbjct: 124 YEAFEVNASDARSAEVVDLRIRPALESGSKVGSSKPVL------------------VVID 165
Query: 480 EVDGMSAGDR---GGIADLI----------------ASIKISKIPIICICNDRYSQKLKS 520
E+DG + G G I LI A + + PIICICND Y+ L
Sbjct: 166 EIDGATGGSENAGGFIHKLIQLTYDRPKKKGKQGEKAQSRPLRRPIICICNDLYAASLAK 225
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L + +RF +P I +RL +I E ++ + AL L GD R +N LQ +
Sbjct: 226 LRQHARIVRFSRPNDLHIIRRLREICEGENMKADARALATLVGVAQGDFRGCLNTLQML 284
>gi|351727118|ref|NP_001235358.1| uncharacterized protein LOC100500251 [Glycine max]
gi|255629843|gb|ACU15272.1| unknown [Glycine max]
Length = 106
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 63/74 (85%), Gaps = 1/74 (1%)
Query: 715 GERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEP 774
GERNFNRFGG LGKNSTMGKNLRLL+DLH H LASR+S GRDT+R++Y + LLK++TEP
Sbjct: 9 GERNFNRFGGCLGKNSTMGKNLRLLDDLHVHILASRESSSGRDTIRMEYLT-LLKEMTEP 67
Query: 775 LRVLPKDELLRKLL 788
L LPK E +++++
Sbjct: 68 LPTLPKAEAVQQVV 81
>gi|45185248|ref|NP_982965.1| ABR019Cp [Ashbya gossypii ATCC 10895]
gi|44980906|gb|AAS50789.1| ABR019Cp [Ashbya gossypii ATCC 10895]
gi|374106168|gb|AEY95078.1| FABR019Cp [Ashbya gossypii FDAG1]
Length = 730
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 139/309 (44%), Gaps = 62/309 (20%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE-------- 397
W EK+RP+ ++VGN+ +++ WL W+ L G G+ +A+AE
Sbjct: 120 WAEKWRPQRFVDLVGNESNNRKVMRWLRQWSA--LVFGEALPGRASANAAAEQPEDPLQR 177
Query: 398 ---KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIK 454
+ +L G PG+GKT+ A ++ + G+ +E+NASD RG G ++
Sbjct: 178 PQKRILLLHGPPGIGKTSVAHVLARQAGYAVMELNASDERG----------GTRLREKVR 227
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDG------------MSAGDRGGIADLIASI--- 499
+ N+ ++ L+ DE+DG + D ++L+ +
Sbjct: 228 NCLFNDTFNSQ-------PVCLVADEIDGSAENGLIRTLVDIVNADARATSELLGRLEHG 280
Query: 500 -----------KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
K+ PI+ ICN+ Y++ L+ L +C + FR P + + +RL +
Sbjct: 281 KRKRARHKYSGKVLVRPIVAICNNVYARALEDLRPHCQIVAFRPPGELALLERLELVCEK 340
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFT 608
EG+ ++ L+++A+ GDIR A+N LQ+MS++ D KD + F
Sbjct: 341 EGVPADKKTLKQMAELSQGDIRNALNNLQFMSVT------DGTGSPASGRRKDTGVPWFK 394
Query: 609 AVDKLFGFN 617
+KLF N
Sbjct: 395 LCNKLFRNN 403
>gi|14520329|ref|NP_125804.1| replication factor C large subunit [Pyrococcus abyssi GE5]
gi|42559542|sp|Q9V2G3.3|RFCL_PYRAB RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit;
AltName: Full=PabRFC large subunit
gi|5457544|emb|CAB49035.1| rfcL activator 1, replication factor C, large subunit [Pyrococcus
abyssi GE5]
gi|380740853|tpe|CCE69487.1| TPA: replication factor C large subunit [Pyrococcus abyssi GE5]
Length = 479
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 159/350 (45%), Gaps = 55/350 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP+ +EI+ + + ++ W+ W + +KA +L+G
Sbjct: 6 WVEKYRPRRLSEIINQEDAISKVKAWIEAW--------------LHGNPPKKKALLLAGP 51
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG GKTT + + F+ IE+NASD R KI++ + +
Sbjct: 52 PGSGKTTTVYALAREYNFEVIELNASDERTY--DKIARYVQAAY---------------T 94
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
MD + ++ +DE D + IA LI ++ PII N Y + K + +
Sbjct: 95 MDILGKRRKIIFLDEADNIEPSGAPEIAKLIDR---ARNPIIMAAN-HYWEVPKEIRDRA 150
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV 585
+ +++ ++++ L++I EG+ V + L E+A R +GD+R AIN LQ ++
Sbjct: 151 ELVEYKRLTQRDVINALVRILKREGITVPKEVLVEIAKRASGDLRAAINDLQ----TVVA 206
Query: 586 IKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN- 644
Y+D R L + +D + + F A+ +F + K ++L MS PD L I EN
Sbjct: 207 GGYEDARYVL--AYRDVEKTVFQALGLVFASDNAKRAKLAMMNLDMS-PDEFLLWIDENI 263
Query: 645 -YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
++ +P +ARA E+IS DI+ + +R + L + +
Sbjct: 264 PHMYLKPEE-----------MARAYEAISKADIYLGRAQRTGNYSLWRYA 302
>gi|330834114|ref|YP_004408842.1| replication factor C large subunit [Metallosphaera cuprina Ar-4]
gi|329566253|gb|AEB94358.1| replication factor C large subunit [Metallosphaera cuprina Ar-4]
Length = 437
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 165/344 (47%), Gaps = 60/344 (17%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAIL 402
++ W KYRP + +EI + + ++L +W+ W + GK K+ +L
Sbjct: 2 TVPWVVKYRPNSLDEIENQEDVKEELRSWIDSWIK----------GKPNY-----KSVLL 46
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL 462
G PG+GKTT A + + G + IE+NASD+R N S++ + ++
Sbjct: 47 YGPPGIGKTTMALALAKSYGLEIIEMNASDTR--------------NVTSLRGIAEKASV 92
Query: 463 SANM--DRSKHPKTVLIMDEVDGM-SAGDRGGIADLIASIKISKIPIICICNDRYSQKLK 519
+ ++ DR K ++ +DE+DG+ S D G I+ ++ I +K PII N+ + L+
Sbjct: 93 TGSLFSDRGK----LIFLDEIDGIQSKQDFGAISTVLELISNTKYPIIMAANNPWDPNLR 148
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ-- 577
L N + +K K + + L +I E ++ + A++ + + +GD R AIN LQ
Sbjct: 149 ELRNATKMIEIKKLGKIPMRRLLKKICANEKVKCEDAAIDVIIEASDGDARYAINMLQSV 208
Query: 578 ---YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDP 634
Y ++ SV+ +++ +R K+ ++ PF + LF G + + + S +D
Sbjct: 209 AEGYGQVTQSVV--EELVRR-----KERELDPFETLRSLFWAQYG-WQAKQAVSRSQTDY 260
Query: 635 DLVPLLIQENY-INYRPSSAGRDEVKRLSLIARAAESISDGDIF 677
+L+ I EN I Y + L+ I RA +++S IF
Sbjct: 261 ELLIRWISENVPIQY----------EMLNDIWRAYDALSRASIF 294
>gi|443898868|dbj|GAC76202.1| DNA replication checkpoint protein CHL12/CTF18 [Pseudozyma
antarctica T-34]
Length = 1117
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 136/308 (44%), Gaps = 80/308 (25%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRN--------------- 387
S W +K+RP E++G++++ +++ WL W+E R
Sbjct: 363 SQMWVDKHRPAKFTELLGDERIHREVLGWLKEWDECVFKRKNHRKERHRQYIQAKYGPPT 422
Query: 388 ---GKKQNDAS--------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436
G K D + E+ ++SG PG+GKTT A +V G+ E+NASD+R
Sbjct: 423 GSFGDKSGDHAFKDPHGRPKERVMMISGPPGLGKTTLAHIVGAHAGYNVYELNASDAR-- 480
Query: 437 ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK-TVLIMDEVDGMSAGDRG----- 490
+A ++++++ S ++ K P+ T++++DE+DG + G G
Sbjct: 481 ------------SAGAVEDVIKMALESGSL---KDPRPTLVVIDEIDGATGGGGGASGES 525
Query: 491 -----GIADLIASIKISKI---------------------PIICICNDRYSQKLKSLVNY 524
+ LI S K S PIICICND Y+ L+ L
Sbjct: 526 HGFIRALVRLIESGKGSDSKAGGLAARGKKQRKGSKPLLRPIICICNDLYAPSLRPLRPM 585
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY-----M 579
+RF KP + KRL ++ AE L V L LA+ +GDIR +N L++ M
Sbjct: 586 AKLVRFHKPPTNLVVKRLREVCEAEALSVETRGLSMLAELTSGDIRSCLNALEFAKTKNM 645
Query: 580 SLSLSVIK 587
+L+ + +K
Sbjct: 646 ALTEAAVK 653
>gi|366994316|ref|XP_003676922.1| hypothetical protein NCAS_0F00820 [Naumovozyma castellii CBS 4309]
gi|342302790|emb|CCC70566.1| hypothetical protein NCAS_0F00820 [Naumovozyma castellii CBS 4309]
Length = 739
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 141/316 (44%), Gaps = 56/316 (17%)
Query: 337 QNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDA-- 394
+N + S W EK+RPK ++VGN++ +++ WL W+ + K+ +
Sbjct: 107 KNKNKQSKLWVEKWRPKGFLDLVGNERNNRRILRWLRQWSPVVFKEELPKLPKEPEENID 166
Query: 395 ------SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS 448
++ ++ G PG+GKT+ A ++ + GF E+NASD R
Sbjct: 167 MDPLLRPQKRILLIHGPPGIGKTSVAHVLAKQAGFSIAEINASDERA------------- 213
Query: 449 NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG-MSAGDRGGIADLI-----ASIKIS 502
+++ ++N + + S L+ DEVDG + G + D+I A+ K++
Sbjct: 214 -GPLVRDKINNTLFNHTFNGS---PVCLVADEVDGSLEGGFIRVLLDIINNDEKATQKLT 269
Query: 503 ------------------------KIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEI 538
PII ICN+ YS L+ L C + F++P + +
Sbjct: 270 LGQNSSFIKKLKSKSKKKTQQRLLTRPIIAICNNLYSPALEKLRPLCEIVSFKRPSDKAL 329
Query: 539 AKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSS 598
+RL ++ EGLE+N+ L EL D GD+R IN LQ+++ D+ +S
Sbjct: 330 LERLEHVSIKEGLELNKKTLNELIDLAQGDVRNCINNLQFLASGNQSTSTDN-NNTWDNS 388
Query: 599 AKDEDISPFTAVDKLF 614
KD +S F V+ LF
Sbjct: 389 NKDSIVSWFRIVNALF 404
>gi|389851689|ref|YP_006353923.1| replication factor C large subunit [Pyrococcus sp. ST04]
gi|388248995|gb|AFK21848.1| replication factor C large subunit [Pyrococcus sp. ST04]
Length = 481
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 155/336 (46%), Gaps = 55/336 (16%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPK +EIV +Q ++++ W+ W + +KA +L+
Sbjct: 4 LPWVEKYRPKRLSEIVNQEQAIEKVKAWIESW--------------LHGNPPKKKALLLA 49
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT + F+ IE+NASD R KI++ + +
Sbjct: 50 GPPGSGKTTTVYAIANEYNFEVIELNASDERTY--EKIARYVQAAY-------------- 93
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
MD + ++ +DE D + IA LI ++ PII N +Y + K +
Sbjct: 94 -TMDIFGKRRKLIFLDEADNIEPSGAKEIAKLIDK---ARNPIIMAAN-KYWEVPKEIRE 148
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
+ +++ ++++ +++I EG+ + + L E+A R +GD+R AIN LQ ++
Sbjct: 149 KAELVEYKRLTQRDLMTAMVRILKKEGITIPKEILVEIAKRASGDLRAAINDLQ----TV 204
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQE 643
++ +D +Q L + +D + + F A+ +F + K +L MS PD L + E
Sbjct: 205 AIGGIEDAKQIL--AYRDVEKTVFQALGLVFSSDNAKKAKMALWNLDMS-PDEFLLWVDE 261
Query: 644 N--YINYRPSSAGRDEVKRLSLIARAAESISDGDIF 677
N ++ RP +A+A ++IS DI+
Sbjct: 262 NIPHMYLRPEE-----------MAKAYDAISRADIY 286
>gi|221508727|gb|EEE34296.1| chromosome transmission fidelity factor, putative [Toxoplasma
gondii VEG]
Length = 1600
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 136/315 (43%), Gaps = 68/315 (21%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRN--GKKQN----------- 392
WTEKYR + +++ + + WL W ++ G KR+ GKK++
Sbjct: 398 WTEKYRARKVVDLLSAPAANRSVLLWLHRWRQRLQKRGMKRDKSGKKESENEEREKRRKL 457
Query: 393 ---------------------DASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431
D + + +L G PG+GKTT A + + GF +EVN S
Sbjct: 458 LQATRESDAGRVLRNEGAEDPDENLPRILLLGGPPGIGKTTLAHVCARHFGFDVVEVNGS 517
Query: 432 DSRGKAD--AKISKGIGGSNA--------NSIKELVSN-----------EALSANMDRSK 470
D R +A + + G+++ +++ ++ EA +RSK
Sbjct: 518 DDRSRATLLPLVMNCVTGADSFFHRKKQEKALRAAATHHGERRLAETEKEAEKRTCERSK 577
Query: 471 HPKTVLIMDEVDGMSAGDRG---GIADLIASI---------KISKIPIICICNDRYSQKL 518
P +L++DE+DG +A + D+IA + K P+ICICND Y++ L
Sbjct: 578 KP-ILLVIDEIDGAAAAGGEGADSVVDVIARLVKRKDDKGKPFIKRPVICICNDLYARVL 636
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ L L P + +A+RL +I L + LE+L D +GD+R IN L +
Sbjct: 637 RPLREVAQILNLAAPPRNVLAERLAEILKENRLTASRQLLEQLIDIFDGDVRACINALDF 696
Query: 579 MSLSLSVIKYDDIRQ 593
+S + ++R+
Sbjct: 697 LSRKSLTAGFRELRE 711
>gi|237832917|ref|XP_002365756.1| ATPase, AAA family domain-containing protein [Toxoplasma gondii
ME49]
gi|211963420|gb|EEA98615.1| ATPase, AAA family domain-containing protein [Toxoplasma gondii
ME49]
Length = 1600
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 136/315 (43%), Gaps = 68/315 (21%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRN--GKKQN----------- 392
WTEKYR + +++ + + WL W ++ G KR+ GKK++
Sbjct: 398 WTEKYRARKVVDLLSAPAANRSVLMWLHRWRQRLQKRGMKRDKAGKKESENEEREKRRKL 457
Query: 393 ---------------------DASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431
D + + +L G PG+GKTT A + + GF +EVN S
Sbjct: 458 LQATRESDAGRVLRNEGAEDPDENLPRILLLGGPPGIGKTTLAHVCARHFGFDVVEVNGS 517
Query: 432 DSRGKAD--AKISKGIGGSNA--------NSIKELVSN-----------EALSANMDRSK 470
D R +A + + G+++ +++ ++ EA +RSK
Sbjct: 518 DDRSRATLLPLVMNCVTGADSFFHSKKQEKALRAAATHHGERRLAETEKEAEKRKCERSK 577
Query: 471 HPKTVLIMDEVDGMSAGDRG---GIADLIASI---------KISKIPIICICNDRYSQKL 518
P +L++DE+DG +A + D+IA + K P+ICICND Y++ L
Sbjct: 578 KP-ILLVIDEIDGAAAAGGEGADSVVDVIARLVKRKDDKGKPFIKRPVICICNDLYARVL 636
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ L L P + +A+RL +I L + LE+L D +GD+R IN L +
Sbjct: 637 RPLREVAQILNLAAPPRNVLAERLAEILKENRLTASRQLLEQLIDIFDGDVRACINALDF 696
Query: 579 MSLSLSVIKYDDIRQ 593
+S + ++R+
Sbjct: 697 LSRKSLTAGFRELRE 711
>gi|312377839|gb|EFR24574.1| hypothetical protein AND_10735 [Anopheles darlingi]
Length = 634
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 130/305 (42%), Gaps = 68/305 (22%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE----------------------- 377
++S+ W EKYRP+ +++ ++ + L WL W++
Sbjct: 309 ETSVLWVEKYRPRRYIDLLSDETTNRSLLQWLKLWDKVVFNREPKKPKETKQLNSFNKKT 368
Query: 378 -KFLDTGTKRNGKK----------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426
+F TG G+K ++ +K A+LSG PG+GKTT A + + G+
Sbjct: 369 GRFESTGGWVKGRKARSTLNTELDEHGCPVQKIALLSGPPGLGKTTLAHTIARHAGYTVR 428
Query: 427 EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA 486
EVNASD R +++ L S + + ++ K P + ++DE+DG
Sbjct: 429 EVNASDDRSPEAFRLA-------------LESGTQMKSVLNEEKRPNCI-VLDEIDGAPV 474
Query: 487 GDRGGIADLIA---SIK-----------------ISKIPIICICNDRYSQKLKSLVNYCS 526
+ IA S K + K PIICICND Y+ L+ L
Sbjct: 475 PTIEFLLRFIAGNVSQKGPAKKAAGGKSSARDKFVLKRPIICICNDMYTPALRQLRQVAF 534
Query: 527 DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVI 586
+ F +A+RL+ IA E + + ++ LA++ D+R ++ LQ+ + + I
Sbjct: 535 VVNFPPTENARLAERLLAIAKGEHIITDLTSMLALAEKTGNDVRACLSMLQFYACANKPI 594
Query: 587 KYDDI 591
+ D+
Sbjct: 595 RLTDV 599
>gi|221488214|gb|EEE26428.1| C-Myc binding protein, putative [Toxoplasma gondii GT1]
Length = 1600
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 136/315 (43%), Gaps = 68/315 (21%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRN--GKKQN----------- 392
WTEKYR + +++ + + WL W ++ G KR+ GKK++
Sbjct: 398 WTEKYRARKVVDLLSAPAANRSVLLWLHRWRQRLQKRGMKRDKAGKKESENEEREKRRKL 457
Query: 393 ---------------------DASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431
D + + +L G PG+GKTT A + + GF +EVN S
Sbjct: 458 LQATRESDAGRVLRNEGAEDPDENLPRILLLGGPPGIGKTTLAHVCARHFGFDVVEVNGS 517
Query: 432 DSRGKAD--AKISKGIGGSNA--------NSIKELVSN-----------EALSANMDRSK 470
D R +A + + G+++ +++ ++ EA +RSK
Sbjct: 518 DDRSRATLLPLVMNCVTGADSFFHRKKQEKALRAAATHHGERRLAETEKEAEKRKCERSK 577
Query: 471 HPKTVLIMDEVDGMSAGDRG---GIADLIASI---------KISKIPIICICNDRYSQKL 518
P +L++DE+DG +A + D+IA + K P+ICICND Y++ L
Sbjct: 578 KP-ILLVIDEIDGAAAAGGEGADSVVDVIARLVKRKDDKGKPFIKRPVICICNDLYARVL 636
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ L L P + +A+RL +I L + LE+L D +GD+R IN L +
Sbjct: 637 RPLREVAQILNLAAPPRNVLAERLAEILKENRLTASRQLLEQLIDIFDGDVRACINALDF 696
Query: 579 MSLSLSVIKYDDIRQ 593
+S + ++R+
Sbjct: 697 LSRKSLTAGFRELRE 711
>gi|407400032|gb|EKF28522.1| hypothetical protein MOQ_007730 [Trypanosoma cruzi marinkellei]
Length = 1016
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 139/320 (43%), Gaps = 72/320 (22%)
Query: 314 STSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLA 373
+TS P P E+ T KR+G++ W KY PK E++ + +L WL
Sbjct: 194 TTSTPFPP-EQQGT-----KRRGRD---EETLWVMKYSPKHFRELLSDDNTNLKLLQWLK 244
Query: 374 HWNEK-FLDTGTKRNGKKQNDASA--------------------------EKAAILSGSP 406
W+ F DT RN N+ + E+ A+L G P
Sbjct: 245 SWDAYIFQDTSATRNTGNNNNNNVNAIATNNGTAAAAAATDGASAPTRPEERLAVLVGPP 304
Query: 407 GMGKTTAAKLVCQMLGFQAIEVNAS-----------------DSRGKADAKISKGI---- 445
G+GKTT A ++ G++ +E+NAS +RG+ A +
Sbjct: 305 GVGKTTLAHVLAAHCGYETVEINASVDRTSSAMERAIQLAVSPARGRRRALPLSSLSTSS 364
Query: 446 ----GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKI 501
G S A S + EA + +D PK LI+DE+DG++A +A + I
Sbjct: 365 SNVDGASKATS----KTGEAGVSLVDMLLRPK-CLIIDEMDGIAAN----VASFLLQQDI 415
Query: 502 SKIPIICICNDRYSQKLKSLVNYCSDLRFRKP-RKQEIAKRLMQIANAEGLEVNEIALEE 560
P+ C+CND Y L+SL C + + P R Q + RL +I EGL V++ AL +
Sbjct: 416 -HCPVFCLCNDFYVPSLRSLRRQCHHVYYFPPIRPQRLLSRLSEIVELEGLSVSKPALAD 474
Query: 561 LADRVNGDIRMAINQLQYMS 580
L NGD+R +N LQ++
Sbjct: 475 LVQSSNGDVRCCLNTLQFLC 494
>gi|157118491|ref|XP_001659132.1| hypothetical protein AaeL_AAEL008320 [Aedes aegypti]
gi|108875684|gb|EAT39909.1| AAEL008320-PB [Aedes aegypti]
Length = 961
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 62/299 (20%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE-------------KFLDTGTKRN 387
Q + W EKYRPK +++ ++ + L WL W++ K L++ K+
Sbjct: 297 QGNSLWVEKYRPKRYVDLLSDETTNRSLLQWLKLWDKVVFGREPKEKKDVKQLNSFNKKT 356
Query: 388 G--------KKQNDAS-----------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428
G KK+N ++ +K A+L G PG+GKTT A + + G+ EV
Sbjct: 357 GRFESNGGWKKKNRSALNTELDEHGRPMQKVALLCGPPGLGKTTLAHTIARHAGYVVREV 416
Query: 429 NASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD 488
NASD R +I+ L S + + ++ K P + ++DE+DG
Sbjct: 417 NASDDRSPEAFRIA-------------LESGTQMKSVLNEDKRPNCI-VLDEIDGAPVAT 462
Query: 489 RGGIADLIA----------------SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRK 532
+ I+ I K PIICICND Y L+ L + F
Sbjct: 463 IDFLLKFISGSVSQKGGKKGKGEKTEKFILKRPIICICNDMYVPALRQLRQIAFVVNFPP 522
Query: 533 PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
+A+RL+ IA E +E + ++ LAD+ D+R ++ LQ+ S I+ D+
Sbjct: 523 TECARLAERLLSIAKREKIETDLTSMLALADKSGNDVRSCLSMLQFCSSLKKPIRLTDV 581
>gi|393220220|gb|EJD05706.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 729
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 116/268 (43%), Gaps = 49/268 (18%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL------------DTGTKRNGKKQND 393
W ++YRP +++G++++ + +WL W+ + T N + Q +
Sbjct: 193 WVDRYRPSRFIDLLGDERVHRDTMSWLKEWDHCVFGKRKAVNKHRKANNNTGFNSENQYE 252
Query: 394 ASA----EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSN 449
+ EK +LSG G GKTT A ++ + G++ +E+NASDSR +
Sbjct: 253 DAFHRPREKLLLLSGPAGYGKTTLAHVIARQAGYEVMEINASDSR--------------S 298
Query: 450 ANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG---IADLIASIKISKI-- 504
I + + S + SK P V+I DE+DG + I LI S
Sbjct: 299 GQVIDDRIRPTLESGSAVGSKRPVCVVI-DEIDGATGSGENTSTFIHKLIGLTFDSAKKG 357
Query: 505 -------------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGL 551
PIICICND Y+ L L + +RF++P + KRL I EGL
Sbjct: 358 RKKDNNAKRPLLRPIICICNDLYAASLTKLRQHARIIRFQRPADAFLTKRLRSICEMEGL 417
Query: 552 EVNEIALEELADRVNGDIRMAINQLQYM 579
AL L GD+R +N LQ++
Sbjct: 418 RAESRALTTLVGIARGDMRGCLNTLQFV 445
>gi|157118489|ref|XP_001659131.1| hypothetical protein AaeL_AAEL008320 [Aedes aegypti]
gi|108875683|gb|EAT39908.1| AAEL008320-PA [Aedes aegypti]
Length = 970
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 62/299 (20%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE-------------KFLDTGTKRN 387
Q + W EKYRPK +++ ++ + L WL W++ K L++ K+
Sbjct: 297 QGNSLWVEKYRPKRYVDLLSDETTNRSLLQWLKLWDKVVFGREPKEKKDVKQLNSFNKKT 356
Query: 388 G--------KKQNDAS-----------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428
G KK+N ++ +K A+L G PG+GKTT A + + G+ EV
Sbjct: 357 GRFESNGGWKKKNRSALNTELDEHGRPMQKVALLCGPPGLGKTTLAHTIARHAGYVVREV 416
Query: 429 NASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD 488
NASD R +I+ L S + + ++ K P + ++DE+DG
Sbjct: 417 NASDDRSPEAFRIA-------------LESGTQMKSVLNEDKRPNCI-VLDEIDGAPVAT 462
Query: 489 RGGIADLIA----------------SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRK 532
+ I+ I K PIICICND Y L+ L + F
Sbjct: 463 IDFLLKFISGSVSQKGGKKGKGEKTEKFILKRPIICICNDMYVPALRQLRQIAFVVNFPP 522
Query: 533 PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
+A+RL+ IA E +E + ++ LAD+ D+R ++ LQ+ S I+ D+
Sbjct: 523 TECARLAERLLSIAKREKIETDLTSMLALADKSGNDVRSCLSMLQFCSSLKKPIRLTDV 581
>gi|374633941|ref|ZP_09706306.1| AAA ATPase [Metallosphaera yellowstonensis MK1]
gi|373523729|gb|EHP68649.1| AAA ATPase [Metallosphaera yellowstonensis MK1]
Length = 438
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 157/340 (46%), Gaps = 50/340 (14%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
S + WT KYRPK +E+ + + KQL W+ W G+K K +
Sbjct: 2 SRVPWTIKYRPKVLDEVENQEDVKKQLREWIESWL-----------GRK----PETKGLL 46
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
L G PG GKTT A + + G + IE NASDSR N S++ +V +
Sbjct: 47 LYGPPGTGKTTLAYALARTYGLEIIETNASDSR--------------NMTSLRNIVERAS 92
Query: 462 LSANM--DRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKL 518
++ ++ +R K ++ +DEVDG+ D G I+ ++ ++ +K PI+ ND + L
Sbjct: 93 MAGSLFNERGK----LIFLDEVDGIQPRQDFGAISAILEILRNTKYPILMAANDPWDPNL 148
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ L + ++ K + + L +I E ++ + A++ + D +GD R AIN L+
Sbjct: 149 RDLREAVKMIEVKRLGKVPLRRLLKRICTEERIKCEDGAIDSIIDASDGDARYAINFLES 208
Query: 579 MSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVP 638
++ +K D + + L K+ +++PF + F G + + + S D DL+
Sbjct: 209 IAEGYREVKEDLVNEVL--RRKERELNPFETLRNTFWAKYG-WQARQAVSNSQIDYDLLM 265
Query: 639 LLIQENY-INYRPSSAGRDEVKRLSLIARAAESISDGDIF 677
EN + Y + L+ + RA +++S +F
Sbjct: 266 RWFSENIPVQY----------ESLNDMWRAYDALSRASVF 295
>gi|141795347|gb|AAI39656.1| Zgc:162875 protein [Danio rerio]
Length = 529
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 89/142 (62%), Gaps = 13/142 (9%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G K++P+G +CL G FV++G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 377 AYRSYLNREGPRALGSKDIPQGEENCLEGCVFVLTGVLESMERDEAKSLIERYGGKVTGN 436
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKA-----LAQAESKK 293
VS+KT YL+ D +K+ KA+ GT + ED L D+IR +KP K A+AE+K
Sbjct: 437 VSRKTTYLVLGRDSGVSKTEKAESFGTKIINEDELLDLIR-TKPGKKSKYEIAAEAENKS 495
Query: 294 SVE-------KVAASLPKKSPQ 308
S KVA+S K +PQ
Sbjct: 496 SKTRTPDSRGKVASSAKKATPQ 517
>gi|395645578|ref|ZP_10433438.1| Replication factor C large subunit [Methanofollis liminatans DSM
4140]
gi|395442318|gb|EJG07075.1| Replication factor C large subunit [Methanofollis liminatans DSM
4140]
Length = 452
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 147/316 (46%), Gaps = 50/316 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP++ EIVGN V+Q+ W W R G I G
Sbjct: 4 WTEKYRPQSLQEIVGNGPAVRQIVDWARSW----------RRGTP--------PLIFYGK 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + + +G++ +E+NASD R KA I E V+ + +
Sbjct: 46 PGIGKTSAAHALARDMGWEIVELNASDQRTKA---------------IIERVAGTSSTTT 90
Query: 466 MDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRY--SQKLKSLV 522
K ++I+DE D + DRGG ++ IK ++ PI+ I ND Y ++++K+L
Sbjct: 91 SLSGAERK-LIILDEADNLHGTADRGGARAIMEIIKNARQPIVLIANDIYGLAKEIKAL- 148
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
+ FR + + + RL +I EGL + AL +A+ GD+R A+N L ++
Sbjct: 149 --GEPVLFRAIQARSMVPRLREICRDEGLACSPEALTGIAESAGGDMRSAVNMLYAAAIG 206
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDE-RIDLSMSD-PDLVPLL 640
+ D+ ++ KD + F + +F GK D R+ ++ D PD +
Sbjct: 207 REDVGEADVH----TNQKDLRATIFDLIAAIF---SGKPDADLIRLSRAVEDTPDTIVQW 259
Query: 641 IQENYINYR-PSSAGR 655
I+ N R P A R
Sbjct: 260 IEGNLHVLRDPERAAR 275
>gi|124485323|ref|YP_001029939.1| replication factor C large subunit [Methanocorpusculum labreanum Z]
gi|150415663|sp|A2SQR6.1|RFCL_METLZ RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|124362864|gb|ABN06672.1| replication factor C large subunit [Methanocorpusculum labreanum Z]
Length = 476
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 155/353 (43%), Gaps = 53/353 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP +I+GN V+Q+ W W + + +
Sbjct: 1 MDWAEKYRPMHLADILGNGSAVRQIVDWAKTWTPD------------------SRPLLFT 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKT+AA + + + ++ +E+NASD+R K I + + G+++ + + L
Sbjct: 43 GKPGIGKTSAALALARDMDWEVLELNASDARTKT---IIERVAGNSSTTTSLFGAGRKL- 98
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+I+DEVD + DRGG + +K +K PI+ I ND Y S+
Sbjct: 99 ------------IIIDEVDNLEGNADRGGARAIADILKEAKQPIVLIANDAYGVS-DSIR 145
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
C + FR + KR+ +I E + E AL +A+ GD+R A+N L S
Sbjct: 146 RLCDPVPFRAIGVSTLQKRMKEICRFEDIACGEDALSAIAESSAGDMRTAVNMLFGSSTG 205
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSD-PDLVPLLI 641
+ I DI ++ KDE + F V +F G R +++ + PD V I
Sbjct: 206 KTSISVGDIN----TAQKDERATIFDLVGGVFA--GAPDRELQKLSFECDEKPDSVMQWI 259
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
+E+ D +R+ RA IS D++ + R Q + L + ++
Sbjct: 260 EESI------PLMHDPKRRI----RAYGRISRADVYLGRTMRRQYFTLWRYAT 302
>gi|242009010|ref|XP_002425286.1| Chromosome transmission fidelity protein, putative [Pediculus
humanus corporis]
gi|212509051|gb|EEB12548.1| Chromosome transmission fidelity protein, putative [Pediculus
humanus corporis]
Length = 823
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 102/428 (23%), Positives = 168/428 (39%), Gaps = 88/428 (20%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTK-RNGKKQNDASAE--- 397
SS W EK+RPKT +++ ++ + + L WL W++ + K + K+ND
Sbjct: 214 SSDLWVEKFRPKTYFDLLSDEAVNRTLLNWLKMWDKVVFNKEPKIKFHTKENDFKFNLNK 273
Query: 398 ----------KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGG 447
K A+L G PG+GKTT A + + G+ IEVNASD R
Sbjct: 274 KFDSDGRPYYKIALLCGPPGLGKTTLAHIAAVIAGYNVIEVNASDDR------------- 320
Query: 448 SNANSIKELVS--NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI------ 499
SI+ + S N A K +I DE+DG + I + S
Sbjct: 321 ----SIEAITSKLNSATQMQTVTGKKKPNCVIFDEIDGAPSQTVDFILKYLGSKQKEKTK 376
Query: 500 -----------KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
K K P+ICICN+ Y+ L++L + F ++ +RLM+I
Sbjct: 377 DNNNSKKEKNEKTVKRPVICICNELYTPSLRNLRQKAFVIHFPNTSSTKLIQRLMEICKR 436
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQYM-----------SLSLSVIKYDDIRQRLLS 597
+ ++ + A+ L D+ DIR I+ L + + SV+ D+++ + +
Sbjct: 437 QEIKTDLTAISLLCDKAQNDIRSCISTLHFFKNKKGERFKSSDVLKSVLGLKDVQKSVFN 496
Query: 598 SAKDEDISP------FTAVDKLFGFNG----------GKLRMDERIDLSMSDPDLVPLL- 640
K+ +P F LF N G R+D + + S + L+
Sbjct: 497 IWKEIFYNPIQKSGIFAKTLSLFSENKPVSNVHYSKEGMDRLDNIVQICQSYGEYERLVD 556
Query: 641 -IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCI 699
+ EN++ R S I E D+ + I++ Q + L S L C
Sbjct: 557 GVYENFLKSRFSGNQNS-------IVTGLEWFCWFDLLDTTIKKKQNYTL--MSYLPYCF 607
Query: 700 IPAALMHG 707
L++
Sbjct: 608 GAWQLLYS 615
>gi|384253246|gb|EIE26721.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 772
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/403 (23%), Positives = 165/403 (40%), Gaps = 92/403 (22%)
Query: 311 EAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHT 370
+A SA AP+E + ++ A + Q W ++Y P + E++G++++ +++
Sbjct: 49 QAAYESALNAPLEGEQPASASAAESKAEMDQGEDLWVDRYAPCSFLELLGDEEINREVVR 108
Query: 371 WLAHWNEKFLDTGTKRNGKKQNDASA---------------EKAAILSGSPGMGKTTAAK 415
WL W++ R K + A+A +K ++ G+PG+GKTT A
Sbjct: 109 WLKTWDKCVFGIDKHRPSNKPHKAAAGKGPATKQGTDVRPPQKILLICGAPGLGKTTLAH 168
Query: 416 LVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTV 475
+V + G++ +E+NASD R A +++ +S+ ++ + P V
Sbjct: 169 VVARHCGYRTVEINASDER--------------TAATLQARISDAVQMQSVMGAGRPNCV 214
Query: 476 LIMDEVDGMSAGD--RGGIADLIASIKISK------------------------------ 503
+I DE+DG + G RG I L+ ++
Sbjct: 215 II-DEIDGATGGSEGRGAIQALLKLVQAGGGRKEACASGAADEAGDADDENAAGGTHGKK 273
Query: 504 ---------IPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVN 554
P+I ICND Y+ L+ L + + ++ RL I ++EGL V+
Sbjct: 274 RRKGGQPLCRPLIAICNDLYAPALRPLRAIAKIV-------ERLSSRLRFICSSEGLSVD 326
Query: 555 EIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
AL L +R D+R +N LQ++S I+ + + + KD S F +LF
Sbjct: 327 RTALTTLCERTEHDVRSCLNTLQFLSKRTRAIRSSHV-SGVQCAQKDMVKSAFGIWQELF 385
Query: 615 G------------FNGGKLRMDERIDLSMSDPDLVPLLIQENY 645
NGG R+ + D LV +QEN+
Sbjct: 386 TDKVAAGPGPSARANGGFERLYSTLG-DFGDHGLVLAGLQENF 427
>gi|156088877|ref|XP_001611845.1| hypothetical protein [Babesia bovis T2Bo]
gi|154799099|gb|EDO08277.1| hypothetical protein BBOV_III007160 [Babesia bovis]
Length = 747
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 138/298 (46%), Gaps = 39/298 (13%)
Query: 333 KRKGQ----NIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRN- 387
KRK Q N S+ +W KY+P+ ++++ ++ + ++ WL W L +G K++
Sbjct: 167 KRKRQTRDHNTDDSNESWLIKYQPRYFSDLLTDEAVNVEVLEWLRSWKCSKLYSGNKKSQ 226
Query: 388 ------GKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKI 441
K+ ++ K +L G G+GK+T ++ + GF +E+NAS+ R K K+
Sbjct: 227 SAYQQKDKESDEVDVPKILLLGGPAGVGKSTVVNVLARHCGFDVVEINASEDRSK--EKV 284
Query: 442 SKGIGG-SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD---RGGIADLIA 497
I G ANSI SK+ + +++EVDG+ A + G + DL
Sbjct: 285 LPTIKGIVTANSI---------------SKNRPNLCLLEEVDGLHAAEGRVIGALKDLNQ 329
Query: 498 SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIA 557
I + PI+CICN+ Y + L+ L + + + RL IA EG +V+E
Sbjct: 330 KNMIKR-PIVCICNELYDKNLRELRQISKVIVVESCYTEALKHRLANIAELEGYQVDEQL 388
Query: 558 LEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615
L++L + DIR I L++ +IK + L AKD T + LF
Sbjct: 389 LDDLIKLHHNDIRSCITALEF------IIKNPHLADNLEIFAKDRSQDIITFLRDLFN 440
>gi|161527778|ref|YP_001581604.1| ATPase central domain-containing protein [Nitrosopumilus maritimus
SCM1]
gi|160339079|gb|ABX12166.1| AAA ATPase central domain protein [Nitrosopumilus maritimus SCM1]
Length = 385
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 37/235 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W+EKYRP+ +++VGN++ + W A W + GTK +L+G
Sbjct: 2 WSEKYRPQIISDMVGNEESRAAIMEWFAKWKK-----GTK-------------PLLLAGP 43
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKTT A LV + G+ I +NASD R K+ I E+++ + N
Sbjct: 44 PGIGKTTMAFLVAKQFGYDMIGLNASDVRSKS--------------RINEILT--PVLGN 87
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ P ++ +DEVDG+ GD GG+A L+ +K +PII ND S K+K++
Sbjct: 88 VSVLGTP--MIFVDEVDGIHGRGDYGGVAALVDILKEPTVPIILAANDDTSDKMKNIKKV 145
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ F+K + + L I E +++ +L ++ D+ GDIR IN Q M
Sbjct: 146 VKTISFKKIPPRLLRVYLENILKKESAKLSPGSLIKVIDKSRGDIRSMINLTQSM 200
>gi|350425741|ref|XP_003494217.1| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Bombus impatiens]
Length = 882
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 120/271 (44%), Gaps = 51/271 (18%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDAS---------- 395
W +KYRP++ E++ ++ + + L W+ W++ + N KK+ +++
Sbjct: 251 WVDKYRPRSYMELLSDESVNRHLLHWIKLWDKIVFNRNYVNNKKKKVNSTFKNRKFMDEK 310
Query: 396 -----------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG 444
++ +LSG PG+GKTT A L + G+ +E+NASD R +
Sbjct: 311 AFQEVDSKGFPIQRIVLLSGPPGLGKTTLAHLAAKHAGYNVVEINASDERSPDAFR---- 366
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISK- 503
+ L+++ + A M P L++DE+DG A + + +SK
Sbjct: 367 ---------QVLLASTQMKAVMGNDPKP-NCLVLDEIDGAPAASIDLLLKFVQGKLVSKG 416
Query: 504 ---------------IPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
P+ICICN+ Y+ L++L + + ++A RLM+I+
Sbjct: 417 KKDKTKTAKQSNSCHRPVICICNEPYTPSLRALRAVALIIPVPEVSATKVADRLMEISQK 476
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQYM 579
E L+VN AL L DIR + LQYM
Sbjct: 477 ENLKVNPDALLGLIKVSGCDIRSCLGALQYM 507
>gi|298708269|emb|CBJ48332.1| similar to CTF18, chromosome transmission fidelity factor 18
homolog isoform 3 [Ectocarpus siliculosus]
Length = 1130
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 115/503 (22%), Positives = 207/503 (41%), Gaps = 96/503 (19%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNG-----KKQN-------- 392
W +KY P +++ ++++ +++ + W+ T R G KK+
Sbjct: 326 WVDKYAPDGFRDLLSDEKINREVLRAVKAWDPFVFKKETARTGTVTAEKKKGVGGMKPLS 385
Query: 393 -----DASAEKA----AILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISK 443
DA+ ++ +L G PG+GKTT A++V + G++ E+NASD R
Sbjct: 386 MASTGDATDKRPEARIIMLCGPPGLGKTTLAQVVAKHAGYRVYEINASDDR--------- 436
Query: 444 GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISK 503
A+ +++ ++ EA+ N + ++++DEVDG + IA+ ++K
Sbjct: 437 -----TASVLRQRMT-EAMEGNTLLADKRPNLIVLDEVDGADGKAAAQVLVDIATAPLAK 490
Query: 504 I------------------PIICICNDRYSQKLKSLVNYCSDLRFR-KPRKQEIAKRLMQ 544
P++ ICND+++ L+ + FR K + +RL
Sbjct: 491 ATAATGGGKKGKRRTSLTRPLVLICNDQWTPALRPIRAIAQVFVFRAKSSPARLVQRLKA 550
Query: 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSA----K 600
I +E L VN AL LADR + D+R ++ LQ+++ S + LL++ K
Sbjct: 551 ICTSERLTVNTDALTRLADRSHLDVRSCLHTLQFVARRASSGSVTNASAALLTAVAEGIK 610
Query: 601 DEDISPFTAVDKLFG----------FNGGKL-RMDERIDL-------SMSDPDLVPLLIQ 642
DE F + +F F GG+ M +R D + +D V +
Sbjct: 611 DERRDLFEVLRSVFTRKKSGTKRRLFLGGEQGSMADRKDAEVFEEVQAFNDHSKVLAGVH 670
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPA 702
EN++ R + LS A A + + D+ + + + Q + S+ + +A+ +
Sbjct: 671 ENFLGVRFND------PTLSKAAAAMDWLEMADLMDTRTNQTQDYSFSRYAPVAAAGVHF 724
Query: 703 ALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDT--LR 760
QR T+ Q ++++ K++ LH + GR T L
Sbjct: 725 LCRSDQRSTVTQPKKDYEARTARAAKSNI----------LHSFADGRQLGATGRTTQALV 774
Query: 761 LDYFSLLLKQLTEPLRVLPKDEL 783
LD S L+ L LR L D L
Sbjct: 775 LDMLSHLMDILAPTLRPLNPDLL 797
>gi|332158285|ref|YP_004423564.1| replication factor C large subunit [Pyrococcus sp. NA2]
gi|331033748|gb|AEC51560.1| replication factor C large subunit [Pyrococcus sp. NA2]
Length = 479
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/355 (25%), Positives = 159/355 (44%), Gaps = 55/355 (15%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAA 400
+ + W EKYRPK +EIV + ++++ W+ W + +KA
Sbjct: 1 MTEIPWIEKYRPKRLSEIVNQEDAIEKVRAWIEAW--------------LHGNPPKKKAL 46
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
+L+G PG GKTT + F+ IE+NASD R N I V
Sbjct: 47 LLAGPPGSGKTTTVYALANEYNFEVIELNASDER--------------TYNKIARYVQA- 91
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
+ MD + ++ +DE D + IA LI ++ PII N Y + K
Sbjct: 92 --AYTMDILGKRRKIIFLDEADNIEPSGAAEIAKLIDK---ARNPIIMAAN-HYWEVPKE 145
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ + + +++ ++++ L++I EG+ V + L E+A R +GD+R AIN LQ
Sbjct: 146 IRDRAELVEYKRLTQRDVMSALIRILRREGITVPKEILTEIAKRASGDLRAAINDLQ--- 202
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
++ Y+D + L + +D + + F ++ +F + K ++L MS PD L
Sbjct: 203 -TVVAGGYEDAKYVL--AYRDIEKTVFQSLGMVFSSDNAKRAKLALMNLDMS-PDEFLLW 258
Query: 641 IQEN--YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
+ EN ++ +P +A+A ++IS DI+ + +R + L + +
Sbjct: 259 VDENIPHMYLKPEE-----------MAKAYDAISRADIYLGRAQRTGNYSLWRYA 302
>gi|367000513|ref|XP_003684992.1| hypothetical protein TPHA_0C04080 [Tetrapisispora phaffii CBS 4417]
gi|357523289|emb|CCE62558.1| hypothetical protein TPHA_0C04080 [Tetrapisispora phaffii CBS 4417]
Length = 807
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 127/300 (42%), Gaps = 82/300 (27%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHW-----------NEKFLDTGTKRNGKK 390
+S W EK++P+ E+VGN+ +++ WL W N K L++ + GK
Sbjct: 132 TSTLWVEKWKPRKFIELVGNEATNRRVLFWLRQWTPVVFKETLPINHKILNS---KKGKD 188
Query: 391 QNDASA---------EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKI 441
ND +K ++ G+PG+GKT+ A ++ + G+ E+NASD R
Sbjct: 189 YNDTVQFEDPFHRPFKKILLIHGTPGIGKTSVAHIIAKQQGYTVNEINASDERS------ 242
Query: 442 SKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKI 501
+KE + N+ S + + LI DE+DG + + G I L+ ++
Sbjct: 243 --------GTFVKEKIHNDLFSNTFE---NKPICLIADEIDG--SIENGFIKVLLDILRN 289
Query: 502 SKI-----------------------------------PIICICNDRYSQKLKSLVNYCS 526
KI PIICICN+ YS L+ L +C
Sbjct: 290 DKIATNYYLSNLEKINRRSKTDKEASQIRKKLKHLLMRPIICICNNLYSSSLEKLRPFCE 349
Query: 527 DLRFRKPRKQEIAKRLMQIANAEGL-----EVNEIALEELADRVNGDIRMAINQLQYMSL 581
+ F+KP ++ I +RL I E +++ L+ + D D+R IN LQ+ L
Sbjct: 350 IIPFKKPSEKAIIERLSYILEKESTNKHEGQIDVELLKTIIDSSQNDLRNCINNLQFFCL 409
>gi|367008610|ref|XP_003678806.1| hypothetical protein TDEL_0A02630 [Torulaspora delbrueckii]
gi|359746463|emb|CCE89595.1| hypothetical protein TDEL_0A02630 [Torulaspora delbrueckii]
Length = 756
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 120/268 (44%), Gaps = 50/268 (18%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHW-----NEKFLDTGTKRNGKKQNDA---SAE 397
W EK+ P+ ++VGN++ +++ W+ W +E+ + +RN + D +
Sbjct: 148 WVEKWCPRNFLDLVGNEKTNRRVLRWIRQWSPCVFDEQLPEVYGQRNETEVLDPLLRPTK 207
Query: 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
K ++ G PG+GKT+ A + + G+ E+NASD R +++ V
Sbjct: 208 KILLIHGPPGIGKTSVAHVAAKQAGYSVAEINASDERA--------------GTLVRDKV 253
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDG-MSAGDRGGIADLI-------------------- 496
N + + L+ DE+DG + +G + DLI
Sbjct: 254 HNTLFNHTFNERP---VCLVADEIDGSIESGFIKILTDLINKDAQATQRRMLGPNMKSRT 310
Query: 497 ----ASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLE 552
S K+ PII ICN+ Y+ L+ L +C + F++P + +RL I EGL+
Sbjct: 311 KKQRKSAKLLLRPIIAICNNLYAPALEKLKPHCEIIAFKRPSDSSLLERLEHICKVEGLK 370
Query: 553 VNEIALEELADRVNGDIRMAINQLQYMS 580
V L+EL D GD+R + LQ+++
Sbjct: 371 VPVKFLKELMDVAQGDVRNCVTNLQFIA 398
>gi|242089817|ref|XP_002440741.1| hypothetical protein SORBIDRAFT_09g005905 [Sorghum bicolor]
gi|241946026|gb|EES19171.1| hypothetical protein SORBIDRAFT_09g005905 [Sorghum bicolor]
Length = 87
Score = 100 bits (250), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/87 (52%), Positives = 65/87 (74%)
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY 514
+L+SN L+ + + K P +LIMDEVD M+AGDRGG+ADL+ I+ISKIPI C ND +
Sbjct: 1 DLISNTTLNYSHNLVKKPDALLIMDEVDSMTAGDRGGVADLVVCIEISKIPIFCNLNDLH 60
Query: 515 SQKLKSLVNYCSDLRFRKPRKQEIAKR 541
+KLKS+VN C L+F KP+KQ+++ +
Sbjct: 61 GEKLKSIVNCCLMLKFSKPKKQQVSSQ 87
>gi|451927463|gb|AGF85341.1| factor C large subunit [Moumouvirus goulette]
Length = 496
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 109/417 (26%), Positives = 189/417 (45%), Gaps = 71/417 (17%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W +KY+PK NEI+G++ V + +L +N+K D TK N I+ G
Sbjct: 4 WLDKYKPKNTNEIIGSKDHVLFIKKFLNQFNKKGEDI-TKPN------------LIIRGI 50
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASD--------SRGKADAKISKGIGGSNANSIKEL- 456
G+GK+ LV GF+ I + S+ + K D +IS +N +IK
Sbjct: 51 NGVGKSLITDLVIDECGFEKIYADLSNVSISRKSKRKKKTDKEIS-----NNNRTIKTFY 105
Query: 457 --VSNEALSANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLI-ASIKISKIPIICICND 512
+ N+ LS N +K K VL+ D + S + ++ + +I + K + PII I N+
Sbjct: 106 MTLQNKFLSKNGKYNK-KKIVLVFDNISNTSNSKEKESLKSIIKLNNKEKQFPIIVIANN 164
Query: 513 RYSQ---KLKSLVNYC----------SDLRFRK------PRKQEIAKRLMQIANAEGLEV 553
++S+ +L+ +V Y + RF+ P +EI K + +I ++E L++
Sbjct: 165 KHSKIVTELRKMVTYVIKKNATNGKKENERFKNEIEIFPPSGEEIIKFIKKICSSENLKI 224
Query: 554 N-----EIALEELADRVNGDIRMAINQLQYMSLSLSVIKYD-----DIRQRLLSSAKDED 603
+ EEL DIR IN L+ L ++ D DI +R +K +D
Sbjct: 225 SSGEDEHEVYEELISHAQYDIRRLINILE----ELKMMYTDNNITMDIFERYREVSKTKD 280
Query: 604 ISP--FTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENY-INYRPSSAGRDEVKR 660
I P + + L G M++ + + + +PL++ ENY N R +++
Sbjct: 281 IDPGIYISTGNLLNNYEG---MNKALSIYEEERATIPLMVHENYPANIRQQYPKLTPIQQ 337
Query: 661 LSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGER 717
+ +I + +ESIS+ D + I NQ W L SC++P+ ++ L + E+
Sbjct: 338 IDMIQKISESISESDKIDGLIYSNQCWSLQSVHGFYSCVVPSYYINSISNKLCRVEK 394
>gi|340369547|ref|XP_003383309.1| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Amphimedon queenslandica]
Length = 797
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 126/306 (41%), Gaps = 75/306 (24%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL-------DTGTKRNGK------ 389
SL W +KY P+ +++ + + + L +WL W+E DT ++GK
Sbjct: 140 SLLWADKYSPREYIQLLSDDSVNRSLLSWLKLWDETVFSKPSHLRDTVNIQSGKDPKKTR 199
Query: 390 ----------------------------KQNDASAE------KAAILSGSPGMGKTTAAK 415
NDA E K +L G PG+GKTT A
Sbjct: 200 GRGGERGRGRGGGHVGHKPWEIYDPKTFATNDALDEHRRPKQKIVLLCGPPGIGKTTLAH 259
Query: 416 LVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTV 475
V + G+ +EVNASD R A + + I L S+ + + + S P
Sbjct: 260 TVARQCGYNIVEVNASDDRS---ADVFRKI----------LESSTEMQSVLTSSSKPN-C 305
Query: 476 LIMDEVDGMSAGDRGGIADLI---------ASIKISKIPIICICNDRYSQKLKSLVNYCS 526
LI+DE+DG A + D+I S + P+ICICND Y+ L++L
Sbjct: 306 LIIDEIDGAPAAAINVLVDVIKTKNPTRGKKSRPLLSRPVICICNDLYATSLRTLKQLAV 365
Query: 527 DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS-----L 581
++A RLM + EG+ L L ++ + DIR +N LQ++ +
Sbjct: 366 VFTVPITVTGKLANRLMDVCRREGISTTTSTLMALCEKTDNDIRTCLNTLQFIHRKRADI 425
Query: 582 SLSVIK 587
SLS ++
Sbjct: 426 SLSAVQ 431
>gi|356577542|ref|XP_003556883.1| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Glycine max]
Length = 959
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 128/325 (39%), Gaps = 105/325 (32%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHW----------------------------NE 377
W +KY PK+ E++ ++Q +++ WL W N+
Sbjct: 215 WVDKYAPKSFTELLSDEQTNREVLLWLKQWDSIVFGSEIRSTSDDVLSSLKRHSSIVHNQ 274
Query: 378 KFLDTGTKR--------NGKKQNDASA-------------------------EKAAILSG 404
K L++ R NG++ +A + +K +L G
Sbjct: 275 KPLNSKFPRMNGGPKWSNGRRYINARSMDESGSSKSIQDVWNAKSRNIGPPEQKILLLCG 334
Query: 405 SPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA 464
SPG+GKTT A + + G+ +EVNASD R A + A + + N LS
Sbjct: 335 SPGLGKTTLAHVAARHCGYHVVEVNASDDRSTASIE---------AKILDVVQMNSVLS- 384
Query: 465 NMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI------------------------K 500
PK L++DE+DG +G + L+ I K
Sbjct: 385 ----DSRPKC-LVVDEIDGALGDGKGAVEVLLKMISSERKPDAGKQSFGKGQQERKSSKK 439
Query: 501 ISKI-----PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNE 555
SK P+ICICND Y+ L+ L F +P + RL I N EG++ +
Sbjct: 440 GSKAASLSRPVICICNDLYAPALRPLRQVAKVHIFVQPTVSRVVNRLTYICNKEGMKASA 499
Query: 556 IALEELADRVNGDIRMAINQLQYMS 580
IAL LA+ DIR +N LQ++S
Sbjct: 500 IALTALAEYTECDIRSCLNTLQFLS 524
>gi|424512890|emb|CCO66474.1| chromosome transmission fidelity protein 18 homolog [Bathycoccus
prasinos]
Length = 1030
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 130/292 (44%), Gaps = 52/292 (17%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGT----------------- 384
+S +W KY P+ +++ +++ ++L WL W++ + T
Sbjct: 288 ASASWLTKYAPRKFTDLISDERSNRELLRWLKMWDKIVFNKKTPDQMMNHSIINPSVMKA 347
Query: 385 -----------------KRNGKKQNDASA---EKAAILSGSPGMGKTTAAKLVCQMLGFQ 424
++ ++ DAS +K A++SG PG GKTT A + + G++
Sbjct: 348 SNGQNRNNNYNNNSSKYQQKTEELYDASGRPMKKIALVSGGPGSGKTTLAHIAAKHAGYR 407
Query: 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGM 484
+E+NA+ ++ + + S+ E + ++S D L++DE+D +
Sbjct: 408 VVEINAASTQKSTNGLVEAVKQAVEMRSVLESMKGISVSTRSDSQNARPNCLVIDEIDAI 467
Query: 485 SAGDRGGIADLIASIKISK--------------IPIICICNDRYSQKLKSLVNYCSDLRF 530
G+ G A + A +K++ PII ICND YS L+ L + +R
Sbjct: 468 FGGNEGKGA-MSALLKLANGTLGGKKNSNGPLNRPIILICNDMYSAALRQLRDASKLVRL 526
Query: 531 RKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
R P + RL +I++ E + + AL +LA+ DIR +N LQY SL+
Sbjct: 527 RPPLAARVTGRLREISSKEKISSDPRALSQLAETCELDIRACLNHLQYKSLA 578
>gi|50286345|ref|XP_445601.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524906|emb|CAG58512.1| unnamed protein product [Candida glabrata]
Length = 721
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 140/341 (41%), Gaps = 63/341 (18%)
Query: 310 IEAKS--TSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQ 367
IEA+S ++ AP E + SP W EK+RPK ++VGN++ ++
Sbjct: 77 IEARSDDSNGETAPAETVSGQRSP----------DCTLWVEKWRPKKFMDLVGNEKNNRR 126
Query: 368 LHTWLAHWNEKFL-------DTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM 420
+ WL WN D ++ + ++ +L+G PG+GKT+ A +V +
Sbjct: 127 ILKWLRQWNFAVFKEQLPQPDQSKEQENFDPFERPMKRILMLNGPPGIGKTSVAHVVAKQ 186
Query: 421 LGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDE 480
GF E+NASD R +++ V N N + P LI DE
Sbjct: 187 AGFSVAEINASDERA--------------GTLVRDKVHNTLF--NHSFTGEP-VCLIADE 229
Query: 481 VDG-MSAGDRGGIADLIAS--------------------------IKISKIPIICICNDR 513
+DG + +G + D++ + K+ PII ICN+
Sbjct: 230 IDGSVESGFVKVLIDIVNADKRATDNYVLKKNARGKNNGKSNRYRPKLLLRPIIVICNNL 289
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
Y+ L+ L C + RKP + +RL I E + + + EL D GDIR +
Sbjct: 290 YAPALEKLRPLCEIITLRKPSDNSVRERLTHICMKERINLGMKTINELIDISEGDIRNCV 349
Query: 574 NQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
N LQ+ S +D KD +S F V+++F
Sbjct: 350 NNLQFQSKGNHKTSNNDNVSEDTLGLKDISLSWFKIVNQIF 390
>gi|341903846|gb|EGT59781.1| hypothetical protein CAEBREN_22739 [Caenorhabditis brenneri]
Length = 822
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 126/502 (25%), Positives = 221/502 (44%), Gaps = 89/502 (17%)
Query: 133 SVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHK 192
+VD ++ EDV+ + L+ G R R V + G R M++ R DP
Sbjct: 34 NVDTENQRHEDVR---NALEEVGYARRKRRLDDVEQV-YDKFGRRSHPMDWHMRMDPV-- 87
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLERE------EAEDLIKRHGGRVTGSVSKKTNYL 246
+V E + + L+SLE++ EA L H G V ++T +
Sbjct: 88 -SADVHEKSK-----INSAKRRALESLEQKINEVATEANTLSGDHLG--AECVDEETIHS 139
Query: 247 LCDEDIAGAKSTKAKEL-------GTPFLTEDGLFDMIRA-------------SKPM-KA 285
LCD+++A + + KE+ G+P++ GL D++ SKP+ +
Sbjct: 140 LCDQELA-RRYKRRKEIMKNPPSDGSPWI---GLSDVVNGQRFYIRTFRDDSKSKPLVET 195
Query: 286 LAQAESKKSVEKVAASLPKKSPQNI----EAKSTSAPKAPIERMKTVASPAKRKGQNIQQ 341
+++ ++ +V A K ++I E + RM S A +
Sbjct: 196 ISRQSTQFNVGYRAFQSICKEAEDIRVLKEETRVKRQEEEFSRMLDDDSSAFDTSTSKHV 255
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE----KFLDTGTKRNGKKQNDA--- 394
S W KY K ++++ + + + + TWL W+E K +D G ++ +
Sbjct: 256 ESALWVNKYEAKNFSDLLSDSTVNRNILTWLKMWDECVFRKKIDDLLGSLGDREREVLQM 315
Query: 395 -------SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGG 447
A K ++SG G+GK+T A++V + G+ I+VNASD+R AD ++K + G
Sbjct: 316 DNGKIRRPALKMLLISGPAGLGKSTLARIVARQAGYSTIDVNASDARTVAD--LNKVLEG 373
Query: 448 SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI-----KIS 502
+ S +D + P LI+DE+DG I LI + K
Sbjct: 374 AVKTS-----------RTLDADQRP-ACLILDEIDGTPID---TIRHLIRCLQANGKKAV 418
Query: 503 KIPIICICNDRYSQKLKSL--VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEE 560
+ PII ICN+ ++ L+ L V +C ++ ++ +AKRL +I + E L + L +
Sbjct: 419 RRPIIGICNNLFTPALRDLRSVAWC--VQLGATKQDALAKRLEEICDHECLRCDLSTLRK 476
Query: 561 LADRVNGDIRMAINQLQYMSLS 582
L D D+R +IN LQ+++++
Sbjct: 477 LCDLCGNDMRHSINTLQWVAIA 498
>gi|407464122|ref|YP_006775004.1| ATPase central domain-containing protein [Candidatus Nitrosopumilus
sp. AR2]
gi|407047310|gb|AFS82062.1| ATPase central domain-containing protein [Candidatus Nitrosopumilus
sp. AR2]
Length = 389
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 161/350 (46%), Gaps = 61/350 (17%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAIL 402
+L W+EKYRP+ +++VGN++ + W W + GTK +L
Sbjct: 3 ALMWSEKYRPQIISDMVGNEEARAAITEWFVKWKK-----GTK-------------PLLL 44
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL 462
G PG+GKTT A LV + G+ I +NASD R K+ I E+++ +
Sbjct: 45 VGPPGIGKTTIAYLVAKQFGYDMIGLNASDVRSKS--------------RINEILT--PV 88
Query: 463 SANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
AN+ P ++ +DEVDG+ GD GG + L+ +K +PI+ N+ S K+KS+
Sbjct: 89 LANVSVMGTP--MIFVDEVDGIHGRGDYGGASALVDILKEPTVPIVLAANNDTSDKMKSI 146
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
++F+K + + L I + +++ ++ ++ D+ GDIR IN Q +
Sbjct: 147 KKVVKTIQFKKIPPRLLRVYLENILKKQSAKLSPGSIIKVIDKSKGDIRSMINLTQSL-- 204
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDL-SMS-DPDLVPL 639
V ++ + + ED V+ F N + + RI L SM DP
Sbjct: 205 ---VTGFNPQTETTFENINVED-----GVNAFFKANSIE---EARIVLYSMQIDP----- 248
Query: 640 LIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
IN SS E+ S++A+ E IS+ D+ +I + Q W+L
Sbjct: 249 ---REKINAFYSSIITSELDN-SILAKYLEIISEADMLFGKIMKTQNWRL 294
>gi|256078697|ref|XP_002575631.1| chromosome transmission fidelity factor [Schistosoma mansoni]
gi|353231986|emb|CCD79341.1| putative chromosome transmission fidelity factor [Schistosoma
mansoni]
Length = 901
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 124/286 (43%), Gaps = 60/286 (20%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL-----DTGTKRNGK------KQNDA 394
WT KY P T +++ ++ + L WL W+ T K N K ND
Sbjct: 171 WTTKYSPSTYLDLISDETTNRTLLRWLKSWDPYVFGTPVPKTQVKSNTNLGPVPYKSNDI 230
Query: 395 SA-------------EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR--GKADA 439
A + ++SG PG+GKTT A L+ Q G+Q IE+NASD R G
Sbjct: 231 EAIAGEINPRDGLPRYRLILISGPPGLGKTTLAHLLAQHAGYQVIEINASDDRSLGVLRD 290
Query: 440 KISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI 499
+++ + S + L +++ + +K LIMDE+DG + +L+A+
Sbjct: 291 RLTAIVSSSTS-----LNTSKKTNFGNHETKLKPCCLIMDEIDGAMP----VVVELLANA 341
Query: 500 K----------------------ISKIPIICICNDRYSQKLKSLVN---YCSDLRFRKPR 534
+ + P+ICICND YS +++L C +R
Sbjct: 342 AKNTLPSNTERQQQRNRRANPPLVLRRPVICICNDLYSPSIRALRAPGIPCLTIRIPIVD 401
Query: 535 KQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ RL I EGL +++I L +L + + DIR +N LQ++S
Sbjct: 402 LGRLVSRLDLITKTEGLSIDKITLTQLVEMSDRDIRSCLNTLQFLS 447
>gi|340715955|ref|XP_003396471.1| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Bombus terrestris]
Length = 882
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 119/271 (43%), Gaps = 51/271 (18%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDAS---------- 395
W +KYRP++ E++ ++ + + L W+ W++ + N +K+ + +
Sbjct: 251 WVDKYRPRSYMELLSDESVNRHLLHWIKLWDKIVFNRNYVNNKRKKVNFTFKNKKFMDEK 310
Query: 396 -----------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG 444
++ +LSG PG+GKTT A L + G+ +E+NASD R +
Sbjct: 311 AFQEVDSKGFPIQRIVLLSGPPGLGKTTLAHLAAKHAGYNVVEINASDERSPDAFR---- 366
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISK- 503
+ L+++ + A M P L++DE+DG A + + +SK
Sbjct: 367 ---------QVLLASTQMKAVMGNDPKP-NCLVLDEIDGAPAASIDLLLKFVQGKLVSKG 416
Query: 504 ---------------IPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
P+ICICN+ Y+ L++L + + ++A RLM+I+
Sbjct: 417 KKDKTKTAKQSNSCHRPVICICNEPYTPSLRALRAVALIIPVPEVSATKVADRLMEISKK 476
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQYM 579
E L+VN AL L DIR + LQYM
Sbjct: 477 ENLKVNPDALLGLVKVSGCDIRSCLGALQYM 507
>gi|345561053|gb|EGX44168.1| hypothetical protein AOL_s00210g40 [Arthrobotrys oligospora ATCC
24927]
Length = 1190
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 124/257 (48%), Gaps = 44/257 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE-KFLDTGTKRNGKKQ--NDASAEKAA 400
L WTEKYR K +++G+++ + + WL W+ F K+N K + + +
Sbjct: 429 LLWTEKYRAKRFTDLLGDERTHRHILRWLKGWDSIVFGAAAGKKNDKSMLSEEQRSRRIL 488
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
+++G PG+GKTT A ++ + G++ +E+NASD R + K N IK++V
Sbjct: 489 LVTGPPGLGKTTMAHVLAKQAGYEPLEINASDDRTASVVK----------NRIKDVVGTN 538
Query: 461 ALSANMDRSKHPKTV-LIMDEVDGMS---AGDRGGIADLIASIKISKI------------ 504
+ +M +K K + +++DE+DG++ AG+ G I L+ I+ K
Sbjct: 539 --TVHMGDAKRGKPICVVIDEIDGVTGDGAGEGGFIKALVDLIEQDKRNSGDPDAQVMKR 596
Query: 505 -------------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGL 551
PII +CND Y+ LKSL C + ++P + RL +I EG+
Sbjct: 597 KGGKKGEKFRFLRPIIAVCNDLYAPSLKSLRPLCEIVYTKRPPLGLVLGRLKEIFEREGV 656
Query: 552 EVNEIALEELADRVNGD 568
E + A+ L + G+
Sbjct: 657 EGDSDAIRRLVELEGGN 673
>gi|17541368|ref|NP_501841.1| Protein K08F4.1 [Caenorhabditis elegans]
gi|3878374|emb|CAA93081.1| Protein K08F4.1 [Caenorhabditis elegans]
Length = 850
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 136/285 (47%), Gaps = 39/285 (13%)
Query: 319 KAPIERM-KTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE 377
+A RM K +P++ + S W KY K ++++ + + + + TWL W+E
Sbjct: 237 EAEFSRMLKETETPSEYENNKSHPESSLWVNKYEAKNFSDLLSDSTVNRNILTWLKMWDE 296
Query: 378 KFL---------DTGTKR-------NGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421
G K NGK + +S K +LSG G+GK+T A++V +
Sbjct: 297 CVFHQKVDDLLASLGEKEREVLHMDNGKIRRPSS--KMLLLSGPAGLGKSTLARIVARQA 354
Query: 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEV 481
G+ I+VNASD+R AD ++K + G+ S +D + P LI+DE+
Sbjct: 355 GYSTIDVNASDARTVAD--LNKVLEGAVKT-----------SRTLDADQRP-ACLILDEI 400
Query: 482 DGMSAGDRGGIADLIASI--KISKIPIICICNDRYSQKLKSL--VNYCSDLRFRKPRKQE 537
DG + I + K + PII ICN+ Y+ L+ L V +C L K +
Sbjct: 401 DGTPIDTIRHLVRCIQATGKKAIRRPIIGICNNLYTPALRDLRGVAWCVQLVATK--QDV 458
Query: 538 IAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
+AKRL +I + E L + L +L + D+R +IN LQ+++++
Sbjct: 459 LAKRLEEICDRERLRCDLSTLRKLCELCANDMRHSINTLQWVAVA 503
>gi|307190445|gb|EFN74480.1| Chromosome transmission fidelity protein 18-like protein
[Camponotus floridanus]
Length = 805
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 123/270 (45%), Gaps = 50/270 (18%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLD------------TGTKRNGKKQND 393
W +KYRP++ E++ ++ + +QL WL W++ + G K++ ++ D
Sbjct: 167 WVDKYRPRSYLELLSDETINRQLLYWLKLWDKIVFNRNIIKPKKQLSVFGKKKDIDEKTD 226
Query: 394 AS--------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI 445
++ A+LSG PG+GKTT A + + G+ +E+NASD R +
Sbjct: 227 IEEVDNRGYPIKRIALLSGPPGLGKTTLAHIAARHAGYNIVEINASDERSPDTFR----- 281
Query: 446 GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI- 504
+ L+++ + A + P LI DE+DG A + I ISK
Sbjct: 282 --------QILLASTEMKAVIGADPRP-NCLIFDEIDGAPAASIELLLKFIQGKLISKNK 332
Query: 505 ---------------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAE 549
P++CICN+ Y+ L++L + + +A+RLM+IA E
Sbjct: 333 KSKGQSEKTSDGCIRPVVCICNEPYAPTLRALRAAAIIIPVPEVSPLRLAERLMEIAKKE 392
Query: 550 GLEVNEIALEELADRVNGDIRMAINQLQYM 579
L V+ L ++A+R D+R + LQYM
Sbjct: 393 KLNVDFGDLVKIAERSGCDVRACVGALQYM 422
>gi|308813520|ref|XP_003084066.1| sister chromatid cohesion-related (ISS) [Ostreococcus tauri]
gi|116055949|emb|CAL58482.1| sister chromatid cohesion-related (ISS) [Ostreococcus tauri]
Length = 739
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 132/283 (46%), Gaps = 65/283 (22%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE-------------KFL-DTGTKRNGKK- 390
WT+K+ P+ +++ ++ + +++ W+ W++ KF D +RNG K
Sbjct: 145 WTQKHTPRNFTDLLSSEYVNREVVHWIKGWDKVVFGRDPPPATMKKFYSDRYAERNGLKK 204
Query: 391 -----------QNDAS---AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436
Q DA+ EK ++SG PG+GKTT A + + G++ ++V +D+
Sbjct: 205 RGPLKSEDTHVQLDATKRPMEKILLISGPPGVGKTTLAHIAAKHCGYELLKVKLADALHS 264
Query: 437 ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGM--SAGDRGGIAD 494
A + + PK V+I DE+DG+ + GDRG I
Sbjct: 265 CSAFVQQ---------------------------KPKCVII-DEIDGVHNAGGDRGAIYA 296
Query: 495 LIASIKISK------IPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
++ ++K K PII ICND Y L+ L + +R + P + R+ +I
Sbjct: 297 VLNALKSQKGGAPLSRPIIAICNDLYCTSLRPLRDVAKVIRVKPPPNATLNGRIREICAK 356
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
E ++V A+ +A+RVN DIR A++ +Q ++ + S + ++
Sbjct: 357 ENVDVEPRAVALVAERVNNDIRSALHTIQLIAKTSSKVTLREV 399
>gi|195999648|ref|XP_002109692.1| hypothetical protein TRIADDRAFT_53969 [Trichoplax adhaerens]
gi|190587816|gb|EDV27858.1| hypothetical protein TRIADDRAFT_53969 [Trichoplax adhaerens]
Length = 806
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 109/255 (42%), Gaps = 34/255 (13%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL--------DTGTKRNGKKQNDASAE 397
W +KY P E++ + + L +WL W++ +T + + +
Sbjct: 228 WVDKYSPHHYRELLSDHSTNRSLLSWLKLWDKTVFGKDFNIPDETLANQLAVDTQNRPLK 287
Query: 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
K A+L G PG+GKTT A ++ + G+ +E+NASD R S I S
Sbjct: 288 KVALLCGPPGLGKTTLAHVIARHAGYNVLEMNASDDR-------SVEIFRQRIES----- 335
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI------------- 504
+ + S + D P +LI DE+DG + I + + +K+
Sbjct: 336 ATQMHSISGDEKGLPNCLLI-DEIDGAPTASVEVLIKFIRNTENAKVKKKSKGHQNILSR 394
Query: 505 PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR 564
PIICICND+Y L+ L + + F +A RL I E L + AL L +
Sbjct: 395 PIICICNDQYVPSLRQLRQHALVITFPPTSTNRLAGRLQDICRKEKLLTDLFALSALCSK 454
Query: 565 VNGDIRMAINQLQYM 579
DIR IN LQ++
Sbjct: 455 AENDIRSCINTLQFL 469
>gi|414865978|tpg|DAA44535.1| TPA: hypothetical protein ZEAMMB73_048051 [Zea mays]
Length = 944
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 136/366 (37%), Gaps = 109/366 (29%)
Query: 301 SLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVG 360
SL +++ Q AK+ I+R+ A+P + W EKY P + E++
Sbjct: 178 SLTRRAEQEALAKALQESTDSIDRVACSATPLVTEK--------LWVEKYAPNSFTELLS 229
Query: 361 NQQLVKQLHTWLAHW--------------------------------NEKFLDT------ 382
++ +++ WL W N F
Sbjct: 230 DEHTNREVLLWLKQWDSIVFGSHIRATGDDVLSALRRHSSTIQKNASNRNFFSKSKGGPV 289
Query: 383 ----GTKRNGKKQN---------------DASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423
GT N + N +A +K +L G PG+GKTT A + + G+
Sbjct: 290 ASQDGTPLNAQSSNPEGLGGSFSKKSSVDNAPEQKVLLLCGPPGLGKTTLAHVAVRHCGY 349
Query: 424 QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG 483
+E+NASD R + + +K + NSI M SK PK L++DE+DG
Sbjct: 350 HVVEINASDDRSASSIE-TKILDVVQMNSI------------MSDSK-PK-CLVIDEIDG 394
Query: 484 MSAGDRGGIADLIASIKISKI-----------------------------PIICICNDRY 514
+G + ++ I K P+ICICND Y
Sbjct: 395 ALGDGKGAVEVILKMINAEKSNNSDKSTNGEETQARKTSRKSHRTAKLLRPVICICNDIY 454
Query: 515 SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAIN 574
+ L+ L F +P + RL I EG + + IAL LA+ DIR +N
Sbjct: 455 APALRQLRQVAKVHVFVQPTISRVVNRLKYICKNEGFKASSIALSALAEYTECDIRSCLN 514
Query: 575 QLQYMS 580
LQ+++
Sbjct: 515 TLQFLN 520
>gi|91089141|ref|XP_973310.1| PREDICTED: similar to CG16838 CG16838-PD [Tribolium castaneum]
Length = 922
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 148/341 (43%), Gaps = 40/341 (11%)
Query: 252 IAGAKSTKAKELGTP--FLTEDGLFDMIRASKPMKALAQAESKK---SVEKVAASLPKKS 306
++G S+ KE+ F TE+ FD+ P + Q +S + KV L KS
Sbjct: 339 MSGVPSSLKKEMEKVRIFSTEESDFDIF----PSLSHVQQKSDNIFWDLPKVDLKLANKS 394
Query: 307 PQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVK 366
Q IE T P R + ++ + + WTEKYR + +I+GN ++V
Sbjct: 395 GQIIE---TVNDVTPKRRGRKKKKSLEKPPEITSREHTMWTEKYRATSSLDIIGNHKVVS 451
Query: 367 QLHTWLAHWNEKFLDTGTKRNGKK----------QNDASAEKAAILSGSPGMGKTTAAKL 416
L WL+HW+ + KR G + ++ A+ IL G PG GKT++
Sbjct: 452 SLKDWLSHWSL----SEHKRRGSESDFEITDSDSRDSATFGNTVILRGPPGSGKTSSIYA 507
Query: 417 VCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476
+C LG+ +EVNAS SK G ++E + + + S K VL
Sbjct: 508 ICTELGYNILEVNAS----------SKRTGKRLLQELQEATQSHQVKKKQNTS---KCVL 554
Query: 477 IMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQ 536
+++++D + D G A L + SK PI+ D S ++ ++N C +F P
Sbjct: 555 LVEDIDIVFDQDEGFSAALSQIMSTSKRPIVLTMTDEPSAGIQRIINDCRVFQF-APLTP 613
Query: 537 EIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ L + EG V AL EL GDIR + QLQ
Sbjct: 614 ILTVWLQILCLIEGYFVKIEALAELLAFNKGDIRRTLLQLQ 654
>gi|326437038|gb|EGD82608.1| hypothetical protein PTSG_11986 [Salpingoeca sp. ATCC 50818]
Length = 1028
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 141/334 (42%), Gaps = 72/334 (21%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLD------------------------ 381
W +++ P+ +++ ++ + K+L WL W++ +
Sbjct: 303 WVDEFSPRRYTDLISDELVNKRLLYWLKRWDKTVFNRDPPPALFAQSSTSNTTAFGGGGD 362
Query: 382 --------------TGTKRNGKK--QNDASAE-----KAAILSGSPGMGKTTAAKLVCQM 420
G NG ++D AE K +L+G PG+GKTT A +V +
Sbjct: 363 NHRNSNFNNSNNGKPGNSNNGPSIYRSDGIAEGPEDAKVVLLAGPPGVGKTTLAHVVARH 422
Query: 421 LGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDE 480
G+ +E+NASD R + ++ + + +A ++E++S E K P L++DE
Sbjct: 423 AGYATVEINASDDR--SPDRLKQAV--LDATQMREVLSAE---------KRP-NCLVLDE 468
Query: 481 VDGMSAGDRGGIADLIASI------------KISKIPIICICNDRYSQKLKSLVNYCSDL 528
+DG + + +I + K PIICICND ++ L++L L
Sbjct: 469 IDGATTSAVNAVIRIIEGKAKRGKGGKDSKGQTLKRPIICICNDLHATSLRNLKKIAYIL 528
Query: 529 RFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKY 588
F + RL QI + L V L L + +GDIR I+ LQ+++ + +
Sbjct: 529 HFHPIPMTSLVSRLDQICAQKQLRVERQVLTTLCELTDGDIRACISTLQFLAQNRKRVTL 588
Query: 589 DDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLR 622
DIR + KD+ I+ T ++F + R
Sbjct: 589 KDIRNTSVGR-KDKVINVRTVWTEVFRLASHRSR 621
>gi|268537192|ref|XP_002633732.1| Hypothetical protein CBG03417 [Caenorhabditis briggsae]
Length = 840
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 126/265 (47%), Gaps = 40/265 (15%)
Query: 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE----KFLDTGTKRNGKKQNDA 394
+ S W KY K +++ + + + + TWL W+E + +D G+++ D
Sbjct: 245 VHSESSLWVNKYEAKNFADLLSDSTVNRNILTWLKMWDECVFQRKVDNLLASLGEREKDV 304
Query: 395 ----------SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG 444
+ K +LSG G+GK+T A++V G+ I+VNASD+R AD ++K
Sbjct: 305 LQMDNGKIRRPSMKMLLLSGPAGLGKSTLARIVASQAGYATIDVNASDARTVAD--LNKV 362
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI----- 499
+ G+ S +D + P LI+DE+DG I LI +
Sbjct: 363 LEGAVKTS-----------RTLDGDQRP-ACLILDEIDGTPID---TIRHLIRCLQATGK 407
Query: 500 KISKIPIICICNDRYSQKLKSL--VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIA 557
K + PII ICN+ Y+ L+ L V +C L K + +AKRL QI + E L +
Sbjct: 408 KAVRRPIIGICNNLYTPALRDLRGVAWCVQLSATK--QDALAKRLEQICDMENLRCDLST 465
Query: 558 LEELADRVNGDIRMAINQLQYMSLS 582
L +L D D+R +IN LQ+ +++
Sbjct: 466 LRKLCDLCANDMRHSINTLQWAAVA 490
>gi|146304797|ref|YP_001192113.1| replication factor C large subunit [Metallosphaera sedula DSM 5348]
gi|145703047|gb|ABP96189.1| replication factor C large subunit [Metallosphaera sedula DSM 5348]
Length = 443
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 146/308 (47%), Gaps = 45/308 (14%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAIL 402
++ W KYRPKT +++ + + +L +W+ W + + A +L
Sbjct: 2 TVPWVVKYRPKTLDDVENQEDVKDELRSWIDSW---------------LKGSPSSTAVML 46
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL 462
G PG GKT+ A + + +E NASD+R N S++ +V ++
Sbjct: 47 YGPPGTGKTSLAIALANTYKLELVETNASDTR--------------NLTSLRAIVERASI 92
Query: 463 SANM--DRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLK 519
S ++ R K ++ +DEVDG+ D G ++ ++ IK +K PI+ ND ++ L+
Sbjct: 93 SGSLFGIRGK----LIFLDEVDGIQPKQDYGAVSAILEIIKNTKYPILMAANDPWNPNLR 148
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L N + +K K + + L +I + E ++ + AL+++ + +GD R AIN LQ +
Sbjct: 149 DLRNAVKMIEVKKLGKIAMRRLLKKICSGEKIKCEDNALDQIIEASDGDSRYAINFLQSI 208
Query: 580 SLSLSVIKYDDIRQRLLSSA---KDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDL 636
+ Y ++ ++L+S K+ ++ PF V +F G + + + S + DL
Sbjct: 209 AEG-----YGEVTEKLVSELVRRKERELDPFETVRSVFWARYG-WQAKQAVSNSQVEYDL 262
Query: 637 VPLLIQEN 644
+ + EN
Sbjct: 263 LMRWLSEN 270
>gi|270011501|gb|EFA07949.1| hypothetical protein TcasGA2_TC005530 [Tribolium castaneum]
Length = 983
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 130/293 (44%), Gaps = 31/293 (10%)
Query: 295 VEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKT 354
V K+ SL +KS Q IE T P R + ++ + + WTEKYR +
Sbjct: 444 VYKIFNSLFEKSGQIIE---TVNDVTPKRRGRKKKKSLEKPPEITSREHTMWTEKYRATS 500
Query: 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKK----------QNDASAEKAAILSG 404
+I+GN ++V L WL+HW+ + KR G + ++ A+ IL G
Sbjct: 501 SLDIIGNHKVVSSLKDWLSHWSL----SEHKRRGSESDFEITDSDSRDSATFGNTVILRG 556
Query: 405 SPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA 464
PG GKT++ +C LG+ +EVNAS SK G ++E + +
Sbjct: 557 PPGSGKTSSIYAICTELGYNILEVNAS----------SKRTGKRLLQELQEATQSHQVKK 606
Query: 465 NMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ S K VL+++++D + D G A L + SK PI+ D S ++ ++N
Sbjct: 607 KQNTS---KCVLLVEDIDIVFDQDEGFSAALSQIMSTSKRPIVLTMTDEPSAGIQRIIND 663
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
C +F P + L + EG V AL EL GDIR + QLQ
Sbjct: 664 CRVFQF-APLTPILTVWLQILCLIEGYFVKIEALAELLAFNKGDIRRTLLQLQ 715
>gi|260950765|ref|XP_002619679.1| hypothetical protein CLUG_00838 [Clavispora lusitaniae ATCC 42720]
gi|238847251|gb|EEQ36715.1| hypothetical protein CLUG_00838 [Clavispora lusitaniae ATCC 42720]
Length = 784
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 146/331 (44%), Gaps = 46/331 (13%)
Query: 324 RMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIV--GNQQLVKQLHTWLAHWNEK-FL 380
R +T P+K + Q W+EKYRP ++ GN++ + + WL W F
Sbjct: 120 RRRTQPKPSKSSQAPLPQ---VWSEKYRPTKYMQLCSAGNERQYRAIMHWLRKWGSVVFG 176
Query: 381 DTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK 440
T + K ++ G G GKT A L+ Q +G+ E+NA++S
Sbjct: 177 HAPTDLDAVDHLSRPLRKVLLVHGPSGTGKTAAVHLIAQQMGYSVQELNAANSMDSMHGV 236
Query: 441 ISKGIGG--SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVD-GMSAGD-RGGIADLI 496
S G +NA + +L AL+ N T L++DE+D ++AGD I++L+
Sbjct: 237 ESLDNAGRFANATAALKLKIKNALTTNSVTGGGKPTCLVIDEIDCSINAGDIIRVISELV 296
Query: 497 A------------SIKISKIPIICICNDRYSQKLK-------SLVNYCSDLRFRKP---- 533
A S + PIICI ND Y+Q ++ L C + FR+P
Sbjct: 297 ALDSRSEDPKKKKSKFVLNRPIICIANDIYTQNVRLGPNPMDKLRPLCELVPFRRPVSSN 356
Query: 534 -------RKQEIAKRLMQIANAE---GLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
Q+ K +Q N++ GL+ EIA E+ + GDIR +N +Q+ S L
Sbjct: 357 NSGRINIAAQKSVKEFLQNVNSKEKMGLDAKEIA--EIFEVCEGDIRACLNHMQFSSRKL 414
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ + L +AKD +S F VD++F
Sbjct: 415 DSDLHALAGPKAL-AAKDSSVSWFALVDQIF 444
>gi|452207850|ref|YP_007487972.1| replication factor C large subunit [Natronomonas moolapensis
8.8.11]
gi|452083950|emb|CCQ37281.1| replication factor C large subunit [Natronomonas moolapensis
8.8.11]
Length = 492
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 108/233 (46%), Gaps = 37/233 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WT +YRP T + + GN + W WNE +A ++ GS
Sbjct: 4 WTTRYRPTTLSAVRGNNKARDAFEEWADTWNEH------------------GEAVVIHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + G+ +E+NASD+R AD +I + G + +NS +
Sbjct: 46 PGVGKTSAAHALANDKGWPILEMNASDAR-TAD-EIERFAGRAASNS----------TLG 93
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
DR ++I+DE D + DRGG A + +K + PI+ I ND Y L +
Sbjct: 94 GDRQ-----LVILDEADNLHRHKDRGGAAAMTRLVKEAAQPIVLIANDYYEMS-AGLRSA 147
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
C ++ FR + I L + E +E +E LE +A+ GD+R AI Q
Sbjct: 148 CQEIEFRDISARSIVPVLRDVCRQEDIEFDEAVLERIAEANRGDLRGAIKDTQ 200
>gi|443734929|gb|ELU18785.1| hypothetical protein CAPTEDRAFT_147267 [Capitella teleta]
Length = 732
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 126/292 (43%), Gaps = 74/292 (25%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN------EKFLDTGTKRNGKKQND------ 393
W E+Y P+ +++ ++ + L WL W E+ + K N K Q+
Sbjct: 45 WVERYSPRNYMDLLSDESTNRTLLRWLKQWEYVVHGKEREKEPKPKENTKTQHQQDGGKA 104
Query: 394 ---ASAE-------------KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA 437
+AE K A+L G PG+GKTT A +V + G+ +E+NASD R A
Sbjct: 105 PWVLAAEALSQLDEHNRPIHKVALLHGPPGLGKTTLAHIVAKHAGYNVVEMNASDDRS-A 163
Query: 438 DAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK-TVLIMDEVDGMSAGDRGGIADLI 496
D K + S+ E PK LI+DE+DG A GG++ I
Sbjct: 164 DIFEQKIEAATQMKSVLE--------------SDPKPNCLIIDEIDG--APTVGGLSCFI 207
Query: 497 A----------SIKISKI------------------PIICICNDRYSQKLKSLVNYCSDL 528
+ ++ ++ I PIICICND Y+ L++L +
Sbjct: 208 SHDVIFTQPAINMLLTVIKGDKKSKKKRKDHGILRRPIICICNDLYTPSLRNLRALAFVI 267
Query: 529 RFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+F ++A RL+Q++ E L + L L ++ + DIR +N LQ++S
Sbjct: 268 KFPLTLASKLANRLLQVSKHESLRTDLSTLMSLCEKTDNDIRSCLNTLQFIS 319
>gi|15897671|ref|NP_342276.1| replication factor C large subunit [Sulfolobus solfataricus P2]
gi|284174996|ref|ZP_06388965.1| replication factor C large subunit [Sulfolobus solfataricus 98/2]
gi|384434285|ref|YP_005643643.1| AAA ATPase [Sulfolobus solfataricus 98/2]
gi|42559540|sp|Q9UXF6.1|RFCL_SULSO RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit;
AltName: Full=SsoRFC large subunit
gi|6015707|emb|CAB57534.1| replication factor C, large subunit [Sulfolobus solfataricus P2]
gi|13813942|gb|AAK41066.1| Activator 1, replication factor C (RFC) large subunit (rfcL)
[Sulfolobus solfataricus P2]
gi|261602439|gb|ACX92042.1| AAA ATPase central domain protein [Sulfolobus solfataricus 98/2]
Length = 405
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 128/277 (46%), Gaps = 44/277 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W KYRP++ ++ KQL W+ W N S KA +L
Sbjct: 2 IQWFLKYRPRSLKDVENQDDAKKQLQEWIESW---------------LNGNSNVKAVLLH 46
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKT A+ + F+ +E+NASDSR D IK + A+
Sbjct: 47 GPPGVGKTVLAEALAHDYNFELLEMNASDSRKLQD--------------IKSIAEKAAVY 92
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
++ +K ++++DEVDG++ D G I ++ I+ +K PII ND ++ L+ L
Sbjct: 93 GSIFGTKG--KLILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDPWNPGLRELR 150
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ----- 577
N + K K + + L +I AE + ++ AL + D GD R AIN LQ
Sbjct: 151 NKAKMIELSKLGKYPLRRILKKICQAEKIICDDEALNYIIDSSEGDARYAINILQGIGEG 210
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
Y ++L++++ L+ K+ ++ PF + +F
Sbjct: 211 YGKVTLNLVES-------LAKRKERELDPFETLRDIF 240
>gi|332025622|gb|EGI65784.1| Chromosome transmission fidelity protein 18-like protein
[Acromyrmex echinatior]
Length = 864
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 140/325 (43%), Gaps = 67/325 (20%)
Query: 308 QNIEAKSTSAPKA-----PIERMKTVASP--AKRKGQNIQQSSLT----------WTEKY 350
Q + K +++P A P +++K A A++K + Q SSL W +KY
Sbjct: 212 QQNDIKQSTSPIANLSSVPYQQLKMQAKEIMARKKELSRQPSSLCDTTNMINDELWVDKY 271
Query: 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKK-------------------- 390
RP++ E++ ++ + +QL WL W++ + KK
Sbjct: 272 RPRSYIELLSDETVNRQLLHWLKLWDKIVFKRNVIKPKKKLPTFGKKDNVDDKKDIEEVD 331
Query: 391 QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNA 450
++ A+LSG PG+GKTT A + + G+ +E+NASD R +
Sbjct: 332 SKGYPIKRIALLSGPPGLGKTTLAHIAAKHAGYNVVEINASDERTPDKFR---------- 381
Query: 451 NSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI------ 504
+ L+++ + A M P LI DE+DG A + I+K
Sbjct: 382 ---QILLASTEMKAVMGADPRP-NCLIFDEIDGAPAASIELLLKFTQGKLIAKKKKKKEQ 437
Query: 505 ----------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVN 554
PIICICN+ Y+ L++L + ++ +A+RLM +A E L V+
Sbjct: 438 SENMSDGCTRPIICICNEPYAPSLRALRAVAVIIPIQEVSPLRLAERLMDLARKEKLNVD 497
Query: 555 EIALEELADRVNGDIRMAINQLQYM 579
L ++A+R D+R I LQYM
Sbjct: 498 FNDLVKIAERSGCDVRACIGALQYM 522
>gi|307194245|gb|EFN76642.1| Chromosome transmission fidelity protein 18-like protein
[Harpegnathos saltator]
Length = 861
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 145/336 (43%), Gaps = 67/336 (19%)
Query: 334 RKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLD---------TGT 384
++ +NI L W +KYRP++ E++ ++ + ++L WL W++ + T
Sbjct: 226 QETKNIVNDEL-WVDKYRPRSYIELLSDETVNRELLHWLKLWDKIIFNRNISKIKNKTKL 284
Query: 385 KRNGKKQNDASAE---------KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG 435
G + D E + A+LSG PG+GKTT A + + G+ +EVNASD R
Sbjct: 285 PEFGTNEEDKIEEVDSKGYPIKRIALLSGPPGLGKTTLAHIAARHAGYNVVEVNASDERS 344
Query: 436 KADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADL 495
+ + L+++ + + + P LI DE+DG A +
Sbjct: 345 PDMFR-------------QILLASTEMKSVIGADPRP-NCLIFDEIDGAPAASIELLLKF 390
Query: 496 IASIKISKI----------------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIA 539
+ ISK P++CICN+ Y+ L++L + + +A
Sbjct: 391 VQGKLISKTKKGKNQAEKMSDGCTRPVVCICNEPYAPTLRTLRATAVIIPVPEVSPLRLA 450
Query: 540 KRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM-------SLSLSVIKYDDIR 592
+RLM+I E L ++ L ++A+R D+R + +QYM +LSL + D R
Sbjct: 451 ERLMEIGRKENLTLDFGDLVKIAERSACDVRSCVGAIQYMGNTELKDNLSLGL---KDTR 507
Query: 593 QRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERID 628
+ L S K P GG + + ERI+
Sbjct: 508 KNLFDSWKSILTIPI--------HRGGVVSVSERIE 535
>gi|70933831|ref|XP_738232.1| replication factor C subunit 1 [Plasmodium chabaudi chabaudi]
gi|56514278|emb|CAH82044.1| replication factor C subunit 1, putative [Plasmodium chabaudi
chabaudi]
Length = 368
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 115/242 (47%), Gaps = 30/242 (12%)
Query: 210 FVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIA-------GAKSTKAKE 262
FV++G S R+E + IK HGG V +VS KT+YL+ E + G K KA E
Sbjct: 128 FVLTGVFKSFTRDELQSKIKEHGGSVMSAVSSKTHYLIHGEYLEDGRLYSEGKKYQKAYE 187
Query: 263 LGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPI 322
L + +K L + E + + K + NIE + + P I
Sbjct: 188 LSK------------QPKTIIKILNEEELLELLPKEKNDNSQSQHNNIE--TNNIPNKNI 233
Query: 323 ERMKTVASPAKRKGQNIQQSSLT---WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF 379
+ K ++ A N S + W +KY+P ++VGN Q V +L +WL+ W++
Sbjct: 234 KDEKEYSNFA-NTNHNQNGSPILNQLWVDKYKPTKIEDLVGNTQNVFKLQSWLSSWDDVC 292
Query: 380 LDTGTKRNGKKQNDASAE----KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG 435
+ G K+ K + E + A+LSG G+GKTT AK+V Q G+ IE NASD R
Sbjct: 293 IK-GLKKQVTKTFRGTFENVNARCALLSGPAGIGKTTTAKIVSQSSGYNVIEFNASDERN 351
Query: 436 KA 437
KA
Sbjct: 352 KA 353
>gi|401408781|ref|XP_003883839.1| putative ATPase, AAA family domain-containing protein [Neospora
caninum Liverpool]
gi|325118256|emb|CBZ53807.1| putative ATPase, AAA family domain-containing protein [Neospora
caninum Liverpool]
Length = 1609
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 128/316 (40%), Gaps = 69/316 (21%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKR------------------- 386
WTEKYR + +++ + + WL W ++ G +
Sbjct: 397 WTEKYRARKVVDLLSPPATNRSVLVWLHQWQQRLQRRGKDKKVGTRGEEGGENEETERRR 456
Query: 387 ---NGKKQNDA---------------SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428
G K++DA + + ++ G+PG+GKTT A + + GF +EV
Sbjct: 457 KLLKGNKESDAGRGSKRRLEGTEDDENLPRILLIGGAPGIGKTTLAHVCARHFGFDVVEV 516
Query: 429 NASDSRGKA-----------------DAKISKGIGGSNANSIKE--LVSNEALSANMDRS 469
N SD R +A AK K A+S E +N A A +RS
Sbjct: 517 NGSDDRSRATLLPLVMNCVTGADSFFHAKKDKKATSRGASSSGEKGRETNGAERAVCERS 576
Query: 470 KHPKTVLIMDEVD---GMSAGDRGGIADLIASI---------KISKIPIICICNDRYSQK 517
K P +L++DE+D S + ++IA + K P+ICIC D Y++
Sbjct: 577 KKP-ILLVIDEIDGAAAASGEGAESVVEVIARLVKKKDAKGKPFIKRPVICICIDLYARV 635
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
L+ L L P + +A+RL +I L + LE+L D GD+R IN L
Sbjct: 636 LRPLREAAQILNLNPPPRNVLAERLAEILKENQLTADRHLLEQLIDIFEGDVRACINALD 695
Query: 578 YMSLSLSVIKYDDIRQ 593
++S ++RQ
Sbjct: 696 FLSRKSLTAGVRELRQ 711
>gi|195052158|ref|XP_001993245.1| GH13174 [Drosophila grimshawi]
gi|193900304|gb|EDV99170.1| GH13174 [Drosophila grimshawi]
Length = 990
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 128/303 (42%), Gaps = 71/303 (23%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF-----------------------LDT 382
W +KY+P+ +++ ++ + L WL W++ L++
Sbjct: 319 WVDKYKPRKYIDLLSDEMTNRSLLYWLKMWDKVVFGKTFQSKQEQKGANTGGAGGQQLNS 378
Query: 383 GTKRNGK----------KQNDA----------SAEKAAILSGSPGMGKTTAAKLVCQMLG 422
KR GK KQ A +K A+L G PG+GKTT A + + G
Sbjct: 379 FNKRTGKFESNGGWRQRKQRQALNTNVDELGRPMQKVALLCGPPGLGKTTLAHTIARHAG 438
Query: 423 FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVD 482
+ E+NASD R K++ L + +S+ +++ K P + ++DE+D
Sbjct: 439 YNVREINASDDRSPEAFKLA-------------LENGTQMSSVLNQDKRPNCI-VLDEID 484
Query: 483 GMSAGDRGGIADLIASIKISKI--------------PIICICNDRYSQKLKSLVNYCSDL 528
G + ++ SK+ PIICICND Y L+SL +
Sbjct: 485 GAPRQSIEYLVKFVSDGIYSKVKSKGAKAEHNVLRRPIICICNDIYDPALRSLRQIAFVV 544
Query: 529 RFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKY 588
F +A+RL+QI++ E L+ + +L LA++ D+R I+ +Q+ S +
Sbjct: 545 SFPPIDAARLAERLLQISHKEHLKTDFGSLIALAEKSGNDVRSCISSMQFFSAQKQSLTL 604
Query: 589 DDI 591
D+
Sbjct: 605 QDV 607
>gi|218192477|gb|EEC74904.1| hypothetical protein OsI_10837 [Oryza sativa Indica Group]
Length = 1250
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 121/272 (44%), Gaps = 40/272 (14%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK------FLDTGTKRNGKKQNDA 394
Q++ WT+KYRP+T ++ GN + VK L+ WL W+E+ + T NG+ D
Sbjct: 366 QTANLWTDKYRPETAAQVCGNSEHVKFLNEWLKGWDERGHRNKQNIVTNGSMNGRSCQDG 425
Query: 395 S----------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG 444
S E +++G G GK+ A + GF IEVN SD R A + K
Sbjct: 426 SDTDYSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIEVNTSDMRNGAYVR-QKF 484
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHP---------------KTVLIMDEVDGMSAGDR 489
+ ++ +++ E + + S P KT+++ ++VD + DR
Sbjct: 485 EEATKSHGLEKWSQEEIIGLPISNSLDPASGTPGTAEYKQVINKTLILFEDVDTVFDEDR 544
Query: 490 GGIADLIASIKISKIPIICICNDR---YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIA 546
G I+ ++ ++ +K PII N + L LV L F P E+ + I
Sbjct: 545 GFISTILKMVETTKWPIILTSNKKDPPLPHLLAQLV-----LDFTYPSSAELLSHVDMIC 599
Query: 547 NAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+EG+E+ + + D GDIR + LQ+
Sbjct: 600 KSEGVEITVPQQKHIIDAFLGDIRRTMMLLQF 631
>gi|108707301|gb|ABF95096.1| AT hook motif family protein, expressed [Oryza sativa Japonica
Group]
gi|215769332|dbj|BAH01561.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 1250
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 121/272 (44%), Gaps = 40/272 (14%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK------FLDTGTKRNGKKQNDA 394
Q++ WT+KYRP+T ++ GN + VK L+ WL W+E+ + T NG+ D
Sbjct: 366 QTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTNGSMNGRSCQDG 425
Query: 395 S----------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG 444
S E +++G G GK+ A + GF IEVN SD R A + K
Sbjct: 426 SDTDYSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIEVNTSDMRNGAYVR-QKF 484
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHP---------------KTVLIMDEVDGMSAGDR 489
+ ++ +++ E + + S P KT+++ ++VD + DR
Sbjct: 485 EEATKSHGLEKWSQEEIIGLPISNSLDPASGTPGTAEYKQVINKTLILFEDVDTVFDEDR 544
Query: 490 GGIADLIASIKISKIPIICICNDR---YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIA 546
G I+ ++ ++ +K PII N + L LV L F P E+ + I
Sbjct: 545 GFISTILKMVETTKWPIILTSNKKDPPLPHLLAQLV-----LDFTYPSSAELLSHVDMIC 599
Query: 547 NAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+EG+E+ + + D GDIR + LQ+
Sbjct: 600 KSEGVEITVPQQKHIIDAFLGDIRRTMMLLQF 631
>gi|348676922|gb|EGZ16739.1| hypothetical protein PHYSODRAFT_300088 [Phytophthora sojae]
Length = 1106
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 117/290 (40%), Gaps = 66/290 (22%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNG------------- 388
+++ W +KY+P++ +++ +++ +++ TW+ W+ + NG
Sbjct: 227 NAVLWLDKYKPQSFLDLLSDERTNREVLTWIKSWDRFVFPKKLRPNGTLPVSPAKPNSFG 286
Query: 389 -------KKQNDASAE-----------KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
K Q AE K +L G PG GKTT A +V + G+ IEVNA
Sbjct: 287 NKFSWAAKNQGSGRAESEEDEDKRPFNKIILLCGPPGAGKTTLANIVARHAGYNPIEVNA 346
Query: 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG-MSAGDR 489
SD R A +K I SI + +I+DE+DG M+ D
Sbjct: 347 SDDR-TASVLRNKLISAMEMQSI--------------WGERKPNCIILDEIDGAMNGSDG 391
Query: 490 GGIADLIASIKISKI-------------------PIICICNDRYSQKLKSLVNYCSDLRF 530
++I I + + P+ICICND Y+ L+ L
Sbjct: 392 KSAIEVILEIANAPLQRKKTGAKTTAKNRHPLTRPLICICNDLYASVLRPLRQMAKIFTL 451
Query: 531 RKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
P Q + RL I EG++ + AL L + DIR +N LQ+ S
Sbjct: 452 DTPHSQRLVTRLKYICRHEGIKASTGALAALCSSADNDIRYCLNTLQFQS 501
>gi|222624606|gb|EEE58738.1| hypothetical protein OsJ_10221 [Oryza sativa Japonica Group]
Length = 1299
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 121/272 (44%), Gaps = 40/272 (14%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK------FLDTGTKRNGKKQNDA 394
Q++ WT+KYRP+T ++ GN + VK L+ WL W+E+ + T NG+ D
Sbjct: 415 QTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTNGSMNGRSCQDG 474
Query: 395 S----------AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG 444
S E +++G G GK+ A + GF IEVN SD R A + K
Sbjct: 475 SDTDYSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIEVNTSDMRNGAYVR-QKF 533
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHP---------------KTVLIMDEVDGMSAGDR 489
+ ++ +++ E + + S P KT+++ ++VD + DR
Sbjct: 534 EEATKSHGLEKWSQEEIIGLPISNSLDPASGTPGTAEYKQVINKTLILFEDVDTVFDEDR 593
Query: 490 GGIADLIASIKISKIPIICICNDR---YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIA 546
G I+ ++ ++ +K PII N + L LV L F P E+ + I
Sbjct: 594 GFISTILKMVETTKWPIILTSNKKDPPLPHLLAQLV-----LDFTYPSSAELLSHVDMIC 648
Query: 547 NAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+EG+E+ + + D GDIR + LQ+
Sbjct: 649 KSEGVEITVPQQKHIIDAFLGDIRRTMMLLQF 680
>gi|407461774|ref|YP_006773091.1| ATPase central domain-containing protein [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045396|gb|AFS80149.1| ATPase central domain-containing protein [Candidatus Nitrosopumilus
koreensis AR1]
Length = 385
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 37/233 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W+EKYRP+ +++VGN++ + W A W + GTK +L G
Sbjct: 2 WSEKYRPQKISDMVGNEETRSVIMEWFAKWKK-----GTK-------------PLLLVGP 43
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKTT A LV + G+ I +NASD R K+ I E+++ + N
Sbjct: 44 PGIGKTTIAFLVAKQFGYDMIGLNASDVRSKS--------------RINEILT--PVLGN 87
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ P ++ +DEVDG+ GD GG+A L+ +K +PII ND + K+K++
Sbjct: 88 VSVLGTP--MIFVDEVDGIHGRGDYGGVAALVDILKEPTVPIILAANDDSADKMKNIKKA 145
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ F+K + + L I E ++ +L ++ D+ GDIR IN Q
Sbjct: 146 VKIISFKKIPPRLLRVYLENILKKENANLSPGSLIKVIDKSRGDIRSMINLTQ 198
>gi|221052234|ref|XP_002257693.1| replication factor c protein [Plasmodium knowlesi strain H]
gi|193807524|emb|CAQ38029.1| replication factor c protein, putative [Plasmodium knowlesi strain
H]
Length = 1095
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 118/258 (45%), Gaps = 34/258 (13%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASA---- 396
Q+S+++ EKYR K +E++ ++ + +++ W+ W E+ + ND +
Sbjct: 249 QTSISFVEKYRAKYFSELLTDETINREVLLWMKQWTERIAKGSANMASTQGNDKNEEEEN 308
Query: 397 ------EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNA 450
++ +L GS G GKTT A ++ F IE+N SD R K
Sbjct: 309 KKSSEFQRILLLGGSAGKGKTTLAYVIANHFKFNVIEINGSDDRNKE------------- 355
Query: 451 NSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK-------ISK 503
++ L+ E++ N P + I+DE+DGM++ + A + K I K
Sbjct: 356 -TLIPLL--ESIVCNNSIGSKP-NMCIIDEIDGMTSTQQNIEAVMKFLTKKDRRNRSIIK 411
Query: 504 IPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELAD 563
PIICICND Y + LK L + + + R+ I + EG+ + + +L +
Sbjct: 412 RPIICICNDIYHKSLKELRKISKVVVVDSVNYETLKGRIHFICDREGISIGNDTVSKLVE 471
Query: 564 RVNGDIRMAINQLQYMSL 581
GDIR +N + ++S+
Sbjct: 472 ICKGDIRAILNTVCFLSI 489
>gi|195387666|ref|XP_002052515.1| GJ17580 [Drosophila virilis]
gi|194148972|gb|EDW64670.1| GJ17580 [Drosophila virilis]
Length = 994
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 127/303 (41%), Gaps = 71/303 (23%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF-----------------------LDT 382
W +KY+P+ +++ ++ + L WL W++ L++
Sbjct: 322 WVDKYKPRKYIDLLSDEMTNRSLLYWLKMWDKVVFGKVFHSKQEQQAANTGASGAQQLNS 381
Query: 383 GTKRNGKKQNDAS--------------------AEKAAILSGSPGMGKTTAAKLVCQMLG 422
KR GK +++ +K A+L G PG+GKTT A + + G
Sbjct: 382 FNKRTGKFESNGGWRQRKARQALNTNVDELGRPMQKVALLCGPPGLGKTTLAHTIARHAG 441
Query: 423 FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVD 482
+ E+NASD R K++ L + +S+ +++ K P + ++DE+D
Sbjct: 442 YNVREINASDDRSPEAFKLA-------------LENGTQMSSVLNQDKRPNCI-VLDEID 487
Query: 483 GMSAGDRGGIADLIASIKISKI--------------PIICICNDRYSQKLKSLVNYCSDL 528
G + ++ SK+ PIICICND Y L+ L +
Sbjct: 488 GAPRQSIEYLVKFVSDGIFSKVKAKGAKAEHNVLRRPIICICNDIYDPALRPLRQIAFVV 547
Query: 529 RFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKY 588
F +A+RL+QIA E L+ + +L LA++ D+R I+ +Q+ ++ +
Sbjct: 548 NFPPIDSARLAERLVQIAKKEHLKTDFGSLIALAEKSGNDVRSCISSMQFFNVQKHSLTL 607
Query: 589 DDI 591
D+
Sbjct: 608 QDV 610
>gi|195117224|ref|XP_002003149.1| GI17752 [Drosophila mojavensis]
gi|193913724|gb|EDW12591.1| GI17752 [Drosophila mojavensis]
Length = 993
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 127/306 (41%), Gaps = 77/306 (25%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF-----------------------LDT 382
W +KY+P+ +++ ++ + L WL W++ L++
Sbjct: 316 WVDKYKPRKYIDLLSDEMTNRSLLYWLKMWDKVVFGKVFHSKQEQQTANTGVAASQQLNS 375
Query: 383 GTKRNGKKQNDAS--------------------AEKAAILSGSPGMGKTTAAKLVCQMLG 422
KR GK +++ +K A+L G PG+GKTT A + + G
Sbjct: 376 FNKRTGKFESNGGWRQRKARQALNTNVDELGRPMQKVALLCGPPGLGKTTLAHTIARHAG 435
Query: 423 FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVD 482
+ E+NASD R K++ L + +S+ ++ K P + ++DE+D
Sbjct: 436 YNVREINASDDRSPEAFKLA-------------LENGTQMSSVLNEDKRPNCI-VLDEID 481
Query: 483 GMSAGDRGGIADLI-----------------ASIKISKIPIICICNDRYSQKLKSLVNYC 525
G R I L+ A + + PIICICND Y L+ L
Sbjct: 482 G---APRQSIEYLVKFVSDGIFSKAKSKGAKAEHNVLRRPIICICNDIYDPALRPLRQIA 538
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV 585
+ F +A+RL+QIA+ E L+ + AL LA++ D+R I+ +Q+ +
Sbjct: 539 FVVSFPPIDAARLAERLLQIAHKEHLKTDFGALIALAEKSGNDVRSCISTMQFFNAQKHC 598
Query: 586 IKYDDI 591
+ D+
Sbjct: 599 LTLQDV 604
>gi|334182292|ref|NP_171966.2| chromosome transmission fidelity protein 18 [Arabidopsis thaliana]
gi|332189616|gb|AEE27737.1| chromosome transmission fidelity protein 18 [Arabidopsis thaliana]
Length = 943
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 100/222 (45%), Gaps = 43/222 (19%)
Query: 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
+K +L G+PG+GKTT A + + G++ +E+NASD R + I ++
Sbjct: 337 QKILLLCGAPGLGKTTLAHIAAKHCGYRVVEINASDERS----------ASAIETRILDV 386
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI------------ 504
V +++A+ PK L++DE+DG + GD G D+I + +++
Sbjct: 387 VQMNSVTAD----SRPK-CLVIDEIDG-ALGDGKGAVDVILKMVLAERKHATGKENVENV 440
Query: 505 ---------------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAE 549
P+ICICND Y+ L+ L F +P + RL I N E
Sbjct: 441 KTSSKKDRRTAPLSRPVICICNDLYAPALRPLRQIAKVHIFVQPTVSRVVNRLKYICNME 500
Query: 550 GLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
G++ AL LA+ DIR +N LQ++ I DI
Sbjct: 501 GMKARSFALSALAEYTECDIRSCLNTLQFLYKKKETINVIDI 542
>gi|91088941|ref|XP_973644.1| PREDICTED: similar to cutlet CG33122-PA [Tribolium castaneum]
Length = 771
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/393 (23%), Positives = 156/393 (39%), Gaps = 62/393 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHW-------------------NEKFLDTGTKR 386
W + Y+P+ E++ ++ + + WL W N+K
Sbjct: 222 WVDLYKPRKYFELLSDESTNRIMLRWLKLWDKAVFKRRPKIKPIKPAEKNKKMFKAPDLC 281
Query: 387 NGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIG 446
++ K A+L G PG+GKTT A +V + G+ +EVNASD R K +
Sbjct: 282 TDLDEHGRPLHKIALLCGPPGLGKTTLAHMVARHAGYNVVEVNASDDRSCEAFKTAL--- 338
Query: 447 GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIA--------- 497
NA ++ +V D+ + P L+ DE+DG + +
Sbjct: 339 -ENATQMRSVV---------DQERRP-NCLVFDEIDGAPPSSIDYLVKFVQGGPSGRKKQ 387
Query: 498 -SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEI 556
+ K PIICICND Y L+ L + F +A+RLM+IA + ++ +
Sbjct: 388 KERNVLKRPIICICNDVYVPALRPLRQIAFVVNFPPTSNTRLAERLMEIAKWQKVKTDMG 447
Query: 557 ALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISP--FTAVDKLF 614
A+ LA++ DIR ++ L + + D+ + +S +DI F+ +F
Sbjct: 448 AMLALAEKSQNDIRACLSVLHFFKSQDKAVTLSDVHK---TSVGQKDIQKGIFSVWRDIF 504
Query: 615 GF---NGGKL--RMDERIDL--SMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARA 667
NG L RM +++ + D + + + ENY N + + E A
Sbjct: 505 LIDKANGDSLKARMSGVLNVVNAFGDYEKIAQGVFENYPNLKFKNTSMVET------CLA 558
Query: 668 AESISDGDIFNVQIRRNQQWQLSQSSSLASCII 700
+ DI N I Q + L A C++
Sbjct: 559 LDWFGFSDIVNKSIYSTQNYNLGSYLPFA-CVV 590
>gi|170290624|ref|YP_001737440.1| DNA replication ATPase HolB large subunit [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174704|gb|ACB07757.1| ATPase involved in DNA replication HolB, large subunit [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 382
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 139/306 (45%), Gaps = 38/306 (12%)
Query: 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
K ++ G PG GKT+AA + L + AIEVNASD R + + + S A S+
Sbjct: 8 KPLLIVGPPGTGKTSAAHAIANELNYDAIEVNASDLRDRTH--LQYIVESSGAVSL---- 61
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQK 517
LS + ++I+DE+D + G+ IA L+ + IPI+ ND Y +
Sbjct: 62 ----LSGK-------RRLIILDEIDALP-GEGHAIASLVKELISKGIPIVMTANDPYERH 109
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
L + N ++F + R Q + L I EGL V E L ++A GD+R AIN L+
Sbjct: 110 LYEIRNLSMMVKFSRVRWQSVVSVLKDICRKEGLSVPEEVLNKIAKSCQGDLRAAINDLE 169
Query: 578 -YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDL 636
+ S ++KY I ++ +D + F + +F ++L M DPD+
Sbjct: 170 GLVKGSAELLKY--IGEKY--GKRDIETDVFKVLSSIFYGENCYPAYLSSLNLDM-DPDM 224
Query: 637 VPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL----SQS 692
+ ++EN + +GR +A+A E +S DI +I R W+ +Q
Sbjct: 225 LFRWVEENVAH---VYSGRS-------LAKAYEMLSLADIMRGRIIRTNNWRFLAYYTQF 274
Query: 693 SSLASC 698
+ C
Sbjct: 275 MTFGVC 280
>gi|270012364|gb|EFA08812.1| hypothetical protein TcasGA2_TC006507 [Tribolium castaneum]
Length = 821
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/393 (23%), Positives = 156/393 (39%), Gaps = 62/393 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHW-------------------NEKFLDTGTKR 386
W + Y+P+ E++ ++ + + WL W N+K
Sbjct: 222 WVDLYKPRKYFELLSDESTNRIMLRWLKLWDKAVFKRRPKIKPIKPAEKNKKMFKAPDLC 281
Query: 387 NGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIG 446
++ K A+L G PG+GKTT A +V + G+ +EVNASD R K +
Sbjct: 282 TDLDEHGRPLHKIALLCGPPGLGKTTLAHMVARHAGYNVVEVNASDDRSCEAFKTAL--- 338
Query: 447 GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIA--------- 497
NA ++ +V D+ + P L+ DE+DG + +
Sbjct: 339 -ENATQMRSVV---------DQERRP-NCLVFDEIDGAPPSSIDYLVKFVQGGPSGRKKQ 387
Query: 498 -SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEI 556
+ K PIICICND Y L+ L + F +A+RLM+IA + ++ +
Sbjct: 388 KERNVLKRPIICICNDVYVPALRPLRQIAFVVNFPPTSNTRLAERLMEIAKWQKVKTDMG 447
Query: 557 ALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISP--FTAVDKLF 614
A+ LA++ DIR ++ L + + D+ + +S +DI F+ +F
Sbjct: 448 AMLALAEKSQNDIRACLSVLHFFKSQDKAVTLSDVHK---TSVGQKDIQKGIFSVWRDIF 504
Query: 615 GF---NGGKL--RMDERIDL--SMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARA 667
NG L RM +++ + D + + + ENY N + + E A
Sbjct: 505 LIDKANGDSLKARMSGVLNVVNAFGDYEKIAQGVFENYPNLKFKNTSMVET------CLA 558
Query: 668 AESISDGDIFNVQIRRNQQWQLSQSSSLASCII 700
+ DI N I Q + L A C++
Sbjct: 559 LDWFGFSDIVNKSIYSTQNYNLGSYLPFA-CVV 590
>gi|356533326|ref|XP_003535216.1| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Glycine max]
Length = 966
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 99/225 (44%), Gaps = 49/225 (21%)
Query: 387 NGKKQNDASAE-KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA--DAKISK 443
N K +N E K +L G PG+GKTT A + + G+ +EVNASD R A +AKI
Sbjct: 322 NAKSRNIGPPEPKILLLCGPPGLGKTTLAHVAARQCGYHVVEVNASDDRSTATIEAKI-- 379
Query: 444 GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI---- 499
+ + N LS PK L++DE+DG +G + L+ I
Sbjct: 380 ---------LDVVQMNSVLS-----DSRPKC-LVVDEIDGALGDGKGAVEVLLKMISSER 424
Query: 500 --------------------KISKI-----PIICICNDRYSQKLKSLVNYCSDLRFRKPR 534
K SK P+ICICND Y+ L+ L F +P
Sbjct: 425 KPDAGKQSLGKGQQERKSSKKGSKTASLSRPVICICNDLYAPALRPLRQVAKVHIFVQPT 484
Query: 535 KQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ RL I N EG++ + IAL LA+ DIR +N LQ++
Sbjct: 485 VSRVVNRLTYICNKEGMKASAIALTALAEYTECDIRSCLNSLQFL 529
>gi|405951905|gb|EKC19774.1| Chromosome transmission fidelity protein 18-like protein, partial
[Crassostrea gigas]
Length = 747
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 119/283 (42%), Gaps = 56/283 (19%)
Query: 335 KGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKK---- 390
K N + L W EK+ PKT +++ ++ + + L WL W+ K K+
Sbjct: 91 KAVNHEAEKLLWVEKFAPKTYTDLLSDESINRTLLHWLKLWDYVVFGKDVKLKKKEMSKK 150
Query: 391 --------------------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
+++ +K +L+G PG+GKTT A ++ + G+ +E+NA
Sbjct: 151 GKEKEQKKKKFLPEVIDELDKHNRPVQKIVLLNGPPGLGKTTLAHIIAKHCGYNVVEMNA 210
Query: 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG 490
SD R AD +K + S+ E S L++DE+DG +
Sbjct: 211 SDDRS-ADVFKTKLEAATQMKSVLE-------------SDPRPNCLVIDEIDG---SPQA 253
Query: 491 GIADLIASIK---------------ISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRK 535
I L+ +K I PIICICND+Y L+ L + F +
Sbjct: 254 VINILLNFVKRSDEPGQKKKKKDEGILLRPIICICNDQYVPALRQLRMNALVINFPQTEP 313
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+A RL ++A ++ L + L L ++ DIR IN LQ+
Sbjct: 314 ARLASRLSEVAKSQSLRTDLNTLLALCNKTENDIRSCINTLQF 356
>gi|296420729|ref|XP_002839921.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636128|emb|CAZ84112.1| unnamed protein product [Tuber melanosporum]
Length = 779
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 64/297 (21%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKR--NGKKQNDA-SAE 397
Q +L WTEKYR K ++VG+++ +Q+ W W++ + R N + +N+
Sbjct: 65 QKTLLWTEKYRAKRFTDLVGDERTHRQVLRWFKSWDKIVFPSVANRLVNNRDENEGRELR 124
Query: 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
K ++ G PG+GKTT A + + G+ +EVNASD R A + KG IK+++
Sbjct: 125 KILLIHGPPGLGKTTLAHVAAKQAGYDVVEVNASDER---SAGVVKG-------RIKDIL 174
Query: 458 SNEALS-----ANMDRSKHPK------TVLIMDEVDGMSAGDRG---------GIADLI- 496
SNE + N + K + L++DE+DG++ G + DL+
Sbjct: 175 SNEGVKTMGAITNGAKQKSSRVTMGKPVCLVVDEIDGVTGGGGAGANEGGFIKALIDLVL 234
Query: 497 ASIKISKI--------------------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQ 536
A K++ I PI+ +CND Y+ LK+L + RKP
Sbjct: 235 ADQKLNNIAEGATKKKGRRKGDSFKLQRPIVAVCNDLYAPALKALRPLAEIVHMRKPPVG 294
Query: 537 EIAKRLMQIANAEGLEVNEIALEELAD----------RVNGDIRMAINQLQYMSLSL 583
+ RL I EG + A+ L + + GD+R A+ ++++ L
Sbjct: 295 PMVGRLKSILEYEGFRTEDGAVRRLVELSCMGGNSTSKSAGDMRAAVVGCEWIACRL 351
>gi|409096242|ref|ZP_11216266.1| replication factor C large subunit [Thermococcus zilligii AN1]
Length = 498
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 147/336 (43%), Gaps = 55/336 (16%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP+ +EIV ++ ++Q+ W+ W + +KA +L+
Sbjct: 5 MPWVEKYRPRRLSEIVNQKEAIEQVRAWVEAW--------------LHGNPPKKKALVLA 50
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT + GF+ IE+NASD R KI + + +
Sbjct: 51 GPPGCGKTTTVYALANEYGFEVIELNASDERTY--EKIERYVQAAY-------------- 94
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
MD + ++ +DE D + IA LI ++ PII N Y + +
Sbjct: 95 -TMDILGKSRKLIFLDEADNIEPSGAKEIAVLIDK---ARNPIIMAAN-HYWEVPWEIRA 149
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
+ +++ + +I K L +I + E + V + L ++A NGD+R AIN LQ ++
Sbjct: 150 KAQIVEYKRLTQGDIVKALARILHMEKITVPKEVLYDIAKHANGDLRAAINDLQ----TV 205
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQE 643
+D + L + +D + S F A+ ++F + + + + M PD + I E
Sbjct: 206 VTGGVEDAQDVL--AYRDTEKSVFQALAQVFATDNARKARLAILGVDMF-PDELLQWISE 262
Query: 644 N--YINYRPSSAGRDEVKRLSLIARAAESISDGDIF 677
N Y RP IARA E++S DI+
Sbjct: 263 NVPYAYPRPED-----------IARAYEALSRADIY 287
>gi|402466376|gb|EJW01882.1| hypothetical protein EDEG_03656 [Edhazardia aedis USNM 41457]
Length = 452
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 114/247 (46%), Gaps = 56/247 (22%)
Query: 344 LTWTEKYRPKTPNEI--VGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
+ W EKYRPK + N+QLV + WL WN KF K +
Sbjct: 6 VLWVEKYRPKNFCDFSFYDNRQLV--ILKWLNKWN-KF-----------------SKFLL 45
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
L GSPG+GKT+ + ML + +E NAS++R K + + SN+N++
Sbjct: 46 LCGSPGIGKTSIVYCISNMLNYHIVEYNASENRTIDLLK--QIVNLSNSNTL-------- 95
Query: 462 LSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLK-- 519
++ K ++++DE+D +S D I ++I I K P++ CND Y+ L+
Sbjct: 96 --------ENKKKLILIDEIDNISK-DYLFIKEIILKQNIIKCPVVFCCNDFYNTPLRKY 146
Query: 520 ----SLVN-YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAIN 574
+VN + +DL I L ++ E LE+NE A+ L N D+R IN
Sbjct: 147 KSNLEIVNLFLNDLN--------IKNILGKVIEKEHLEINEKAINLLIQHSNKDLRHIIN 198
Query: 575 QLQYMSL 581
L +SL
Sbjct: 199 NLHVLSL 205
>gi|343477664|emb|CCD11568.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1068
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 137/296 (46%), Gaps = 41/296 (13%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASA--EKAAILS 403
W+ KY P+ +++ + +L W+ W+E + A+ ++ AIL
Sbjct: 257 WSMKYSPQRFRDLLSDDATNLKLLRWMKSWDEYVFREEPSEGAGASSPAAPPDDRLAILI 316
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSR--GKADAKISKGI--GGS---NANSIKEL 456
G PG+GKTT A ++ G++ +E+NAS R K + I I GG SI
Sbjct: 317 GPPGVGKTTLAHVLAMHCGYEPLEINASVDRTASKIENAIQLAIAPGGGRRRKQRSISAT 376
Query: 457 VSNEALSAN-------MDRSKHPKT-------------VLIMDEVDGMSAGDRGGIADLI 496
S+ A++ + + K+P LI+DEVDG + +A +
Sbjct: 377 SSSRAVTGDAGAAASGGNSGKNPAAPKSSLTDMLMVPRCLIIDEVDGAT----DNVAAFL 432
Query: 497 ASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKP-RKQEIAKRLMQIANAEGLEVNE 555
I + P++C+CN++ +Q ++ L+ C + + P R Q + RL +I EG++V++
Sbjct: 433 LKQDIHR-PVLCLCNEK-NQAVRQLLKRCGMVLYIDPIRPQRLLSRLREITELEGIKVDD 490
Query: 556 IALEELADRVNGDIRMAINQLQYMS---LSLSVIKYDDIRQRLLSSA--KDEDISP 606
L +L NGD+R +N LQ+ L+ + +Q LL A KD +SP
Sbjct: 491 AILADLVRSSNGDVRCCLNTLQFAYQQILTSGAQHSHNQQQELLHGALVKDTKLSP 546
>gi|195471147|ref|XP_002087867.1| GE14801 [Drosophila yakuba]
gi|194173968|gb|EDW87579.1| GE14801 [Drosophila yakuba]
Length = 993
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/330 (23%), Positives = 133/330 (40%), Gaps = 76/330 (23%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF-------------------------- 379
W +KY+P+ +++ ++ + L WL W++
Sbjct: 322 WVDKYKPRKYIDLLSDEMTNRSLLYWLKMWDKVVFGKAFHSKREQEAVTAEGGTAGGAGN 381
Query: 380 -LDTGTKRNGKKQNDAS--------------------AEKAAILSGSPGMGKTTAAKLVC 418
L++ KR GK +++ +K A+L G PG+GKTT A +
Sbjct: 382 QLNSFNKRTGKFESNGGWRQRKSRQALNTNVDALGRPMQKVALLCGPPGLGKTTLAHTIA 441
Query: 419 QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478
+ G+ E+NASD R K++ L + +S+ ++ K P + ++
Sbjct: 442 RHAGYNVREINASDDRSPEAFKLA-------------LENGTQMSSVLNEDKRPNCI-VL 487
Query: 479 DEVDGMSAGDRGGIADLIASIKISKI--------------PIICICNDRYSQKLKSLVNY 524
DE+DG + I+ SK+ PIICICND Y L+ L
Sbjct: 488 DEIDGAPRQSIEYLVKFISDAVYSKVKVKGAKAEHNVLKRPIICICNDVYDPALRPLRQV 547
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
+ F +A+RL++IA+ E L+ + +L LA++ D+R I+ +Q+ +
Sbjct: 548 AFVVSFPPIDAARLAERLVKIAHREQLKTDFGSLIALAEKSGNDVRSCISSMQFFNAQKH 607
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ D+ L KD F D +F
Sbjct: 608 SLTLQDVLNNNLGQ-KDRHQGLFAVWDAIF 636
>gi|198420602|ref|XP_002123701.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 844
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 132/295 (44%), Gaps = 57/295 (19%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE--------------KFLDTGTK 385
QQ ++W +K++ TP+E N++ + L +WL W E K K
Sbjct: 206 QQGVVSWCDKHQATTPDEYTCNKKGLGNLTSWLTKWRERIEKEKRYILKQSKKLEQMNKK 265
Query: 386 RNGKK----------------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429
+NGK + D + + +++G G GKT+A + Q GF+ +E+N
Sbjct: 266 KNGKLKYSDDEDFQLSDDEDWEEDNTLCNSYLITGPAGCGKTSALYVCAQQAGFKILELN 325
Query: 430 ASDSRG-----------------KADAKISKG-------IGGSNANSIKELVSNEALSAN 465
AS+ R +++++KG + KE ++ +
Sbjct: 326 ASNDRSSKQVMTKFQEATQSYLVSGNSQLNKGKSEARNQLSNFFIKKSKESTTSCITETH 385
Query: 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYC 525
MD+ K+ +++ +DEVD + D+G + + + I SK PI+ + D S S++ C
Sbjct: 386 MDKDKN--SLIFLDEVDAVLDTDKGFWSSVCSIINTSKRPIV-LTADSTSAVEPSVLEKC 442
Query: 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
++ +KP+ ++I L IA AE L +N L+ + +N D R IN +Q+ +
Sbjct: 443 LVVKLKKPKTKDICDTLQTIAKAESLSLNNDDLKAVVTTLNHDPRGCINSMQFWT 497
>gi|156838460|ref|XP_001642935.1| hypothetical protein Kpol_431p4 [Vanderwaltozyma polyspora DSM
70294]
gi|156113516|gb|EDO15077.1| hypothetical protein Kpol_431p4 [Vanderwaltozyma polyspora DSM
70294]
Length = 757
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 151/345 (43%), Gaps = 77/345 (22%)
Query: 335 KGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE-KFLDTGTKRNGKKQND 393
K +I +SL W EK++P +VGN+ +++ +WL W F + KR N+
Sbjct: 94 KHTSISDNSL-WVEKWKPTKFIHLVGNEHTNRRILSWLRQWTPLVFKEELPKRTINNNNN 152
Query: 394 ASA---------------EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKAD 438
+ +K ++ G PG+GKT+ + ++ + G+ E+NASD R
Sbjct: 153 NNNNNNNVESSDFFQRPNKKILLIHGPPGIGKTSISHIIAKQQGYSITEINASDERS--- 209
Query: 439 AKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIAS 498
G+ +KE + N + N+ K P LI DE+DG + + G I LI
Sbjct: 210 -----GL------QLKEKIHNNIFNNNL--LKRP-MCLIADEIDG--SIENGFIKILINI 253
Query: 499 IKISKI---------------------------PIICICNDRYSQKLKSLVNYCSDLRFR 531
+K I PIICICN+ YS L+ L YC + F+
Sbjct: 254 LKNDSIATDYIQSNQMNHKTKEFKKRLKKLLSRPIICICNNIYSPSLEKLKPYCEIISFK 313
Query: 532 KPRKQEIAKRLMQIANAEGLEVNEIALE-------ELADRV---NGDIRMAINQLQYMSL 581
KP + I +RL I + E + N++ L+ L D + DIR IN LQ++S+
Sbjct: 314 KPNENSILERLNFIIDHE-FKKNDLLLDNDFFSANNLKDLILTSQNDIRNCINNLQFLSV 372
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDER 626
+ +D + + KD S F V+++F N ++D R
Sbjct: 373 QIKKCNPNDKKLDKSNIVKDFTQSWFKIVNEVFQKNS---QLDNR 414
>gi|170071240|ref|XP_001869850.1| chromosome transmission fidelity protein 18 [Culex
quinquefasciatus]
gi|167867164|gb|EDS30547.1| chromosome transmission fidelity protein 18 [Culex
quinquefasciatus]
Length = 575
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 118/282 (41%), Gaps = 63/282 (22%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE------------------------K 378
S+ W EKYRPK +++ ++ + L WL W++ +
Sbjct: 296 SVLWVEKYRPKRYIDLLSDETTNRSLLQWLKLWDKVVFNREPKQTKDTKQINSFNKKTGR 355
Query: 379 FLDTGTKRNGKK-------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431
F G K+ G+ ++ A+K A+L G PG+GKTT A + + G+ EVNAS
Sbjct: 356 FESGGWKKKGRSTLNTELDEHGRPAQKIALLCGPPGLGKTTLAHTIARHAGYVVREVNAS 415
Query: 432 DSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG 491
D R +++ GG+ S+ +++ P + ++DE+DG
Sbjct: 416 DDRSPEAFRVALE-GGTQMKSV------------LNQDGRPNCI-VLDEIDGAPVATIEF 461
Query: 492 IADLI-----------------ASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPR 534
+ + A I K PIICICND Y L+ L + F
Sbjct: 462 LLRFVTGAVPVKGAKKSAKGEKADKFILKRPIICICNDMYVPALRQLRQMAFVVNFPPTE 521
Query: 535 KQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
+A+RL+ IA E + + ++ LAD+ D+R A QL
Sbjct: 522 SARLAERLLLIAKQEKILTDLTSMLALADKTGNDVR-AFPQL 562
>gi|194855767|ref|XP_001968610.1| GG24404 [Drosophila erecta]
gi|190660477|gb|EDV57669.1| GG24404 [Drosophila erecta]
Length = 993
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/330 (23%), Positives = 132/330 (40%), Gaps = 76/330 (23%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF-------------------------- 379
W +KY+P+ +++ ++ + L WL W++
Sbjct: 322 WVDKYKPRKYIDLLSDEMTNRSLLYWLKMWDKVVFGKAFHSKREQEAVTGEGGTAGGAGN 381
Query: 380 -LDTGTKRNGKKQNDAS--------------------AEKAAILSGSPGMGKTTAAKLVC 418
L++ KR GK +++ +K A+L G PG+GKTT A +
Sbjct: 382 QLNSFNKRTGKFESNGGWRQRKSRQALNTNVDALGRPMQKVALLCGPPGLGKTTLAHTIA 441
Query: 419 QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478
+ G+ E+NASD R K++ L + +S+ ++ K P + ++
Sbjct: 442 RHAGYNVREINASDDRSPEAFKLA-------------LENGTQMSSVLNEDKRPNCI-VL 487
Query: 479 DEVDGMSAGDRGGIADLIASIKISKI--------------PIICICNDRYSQKLKSLVNY 524
DE+DG + I+ SK+ PIICICND Y L+ L
Sbjct: 488 DEIDGAPRQSIDYLVKFISDAVYSKVKAKGAKAEHNVLKRPIICICNDVYDPALRPLRQV 547
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
+ F +A+RL++IA E L+ + +L LA++ D+R I+ +Q+ +
Sbjct: 548 AFVVSFPPIDAARLAERLVKIAYKEQLKTDFGSLIALAEKSGNDVRSCISSMQFFNAQKH 607
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ D+ L KD F D +F
Sbjct: 608 SLTLQDVLNNNLGQ-KDRHQGLFAVWDAIF 636
>gi|359495648|ref|XP_002265379.2| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Vitis vinifera]
Length = 948
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 102/222 (45%), Gaps = 27/222 (12%)
Query: 375 WNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434
WN+K TG +K +L G PG+GKTT A + + G++ +E+NASD R
Sbjct: 306 WNKKSRGTGPPE----------QKILLLCGPPGLGKTTLAHVAAKHCGYRVVEINASDDR 355
Query: 435 GKADAKISKGIGGSNANSIKE------LVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD 488
+ + +K + NS+ LV +E A D + +L M + +
Sbjct: 356 SSSTIE-AKILDVVQMNSVMADSKPNCLVIDEIDGALSDGKGAVEVILKMVSTERKADNR 414
Query: 489 RGGIADLIASIKISKI----------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEI 538
+G +A + S +IS P+ICICND Y+ L+ L F +P +
Sbjct: 415 KGNVAKVDESGQISSKKGHKTASLSRPVICICNDLYAPALRPLRQVAKVHIFVQPTVSRV 474
Query: 539 AKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
RL I N EGL+ N AL LA+ DIR +N LQ+++
Sbjct: 475 VSRLKYICNMEGLKTNSTALAALAEYTECDIRSCLNTLQFLN 516
>gi|195576414|ref|XP_002078071.1| GD22729 [Drosophila simulans]
gi|194190080|gb|EDX03656.1| GD22729 [Drosophila simulans]
Length = 978
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 132/330 (40%), Gaps = 76/330 (23%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE---------------------------K 378
W +KY+P+ +++ ++ + L WL W++
Sbjct: 322 WVDKYKPRKYIDLLSDEMTNRSLLYWLKMWDKVVFGKAFHSKREQEAVTGEGGSAGGAGN 381
Query: 379 FLDTGTKRNGKKQNDAS--------------------AEKAAILSGSPGMGKTTAAKLVC 418
L++ KR GK +++ +K A+L G PG+GKTT A +
Sbjct: 382 HLNSFNKRTGKFESNGGWRQRKSRQALNTNVDALGRPMQKVALLCGPPGLGKTTLAHTIA 441
Query: 419 QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478
+ G+ E+NASD R K++ L + +S+ ++ K P + ++
Sbjct: 442 RHAGYNVREINASDDRSPEAFKLA-------------LENGTQMSSVLNEDKRPNCI-VL 487
Query: 479 DEVDGMSAGDRGGIADLIASIKISKI--------------PIICICNDRYSQKLKSLVNY 524
DE+DG + I+ +K+ PIICICND Y L+ L
Sbjct: 488 DEIDGAPRQSIDYLVKFISDAVYTKVKAKGAKAEHNVLKRPIICICNDVYDPALRPLRQV 547
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
+ F +A+RL++IA E L+ + +L LA++ D+R I+ +Q+ +
Sbjct: 548 AFVVTFPPIDAARLAERLVKIAYKEQLKTDFGSLIALAEKSGNDVRSCISSMQFFNAQKH 607
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ D+ L KD F D +F
Sbjct: 608 SLTLQDVLNNNLGQ-KDRHQGLFAVWDAIF 636
>gi|297527205|ref|YP_003669229.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
gi|297256121|gb|ADI32330.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
Length = 329
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 45/242 (18%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
+ L W EKYRPKT +EIV +++V +L ++ N L +
Sbjct: 9 AELLWAEKYRPKTLDEIVNQEEIVSRLKRFVQERNMPHL--------------------L 48
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQ-----AIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
+G PG GKTTAA + L + +E+NASD RG D SK +KE
Sbjct: 49 FAGPPGTGKTTAAHCLAHDLFGENYRQYMLELNASDERG-IDVIRSK---------VKEF 98
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY-S 515
++AN+ P ++++DE D M+A + + L+ + + I I N Y S
Sbjct: 99 ARTR-VTANI-----PFKIVLLDEADNMTADAQQALRRLM-EMYTATTRFILIAN--YPS 149
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ ++ + + C+ RF +K+++ RL IAN E +EV+E ALE + D GD+R AIN
Sbjct: 150 KIIEPIQSRCAVFRFAPLKKEDVISRLKWIANQEKVEVDEEALEAIHDLSEGDMRRAINI 209
Query: 576 LQ 577
LQ
Sbjct: 210 LQ 211
>gi|16082282|ref|NP_394741.1| replication factor C large subunit [Thermoplasma acidophilum DSM
1728]
gi|42559529|sp|Q9HIP7.1|RFCL_THEAC RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|10640630|emb|CAC12408.1| replication factor C subunit related protein [Thermoplasma
acidophilum]
Length = 418
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 116/255 (45%), Gaps = 53/255 (20%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
++W +KYRPK ++++ N ++ KQ+ W+ W E G + +++ IL
Sbjct: 2 MSWADKYRPKNIDDVILNSEIRKQITEWIESWKE-----GIPK----------KRSLILY 46
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GS G GKTT A + G +E+NASD R N +S++ +L
Sbjct: 47 GSQGTGKTTTAYAIAGTFGVPVVEMNASDQR--------------NRDSMRGTALMASLY 92
Query: 464 ANM--DRSKHPKTVLIMDEVDGM--SAGDRGGIADLIASIKISKIPIICICNDRYSQKLK 519
++ + +K P V+++DE D M GD GGI +L IK S PI+ ND + + K
Sbjct: 93 GDLFVESAKRPSKVILIDEADNMFERGGDTGGIYELSKIIKNSANPIVITMNDIFEFRKK 152
Query: 520 SLVNYCSDL-----------------RFRKPRKQEIAKRLMQIANAEGLEVNEIALEELA 562
NY SD+ + ++ I RL+ I EG + + ++ +
Sbjct: 153 ---NYASDVISASLTIEMKQYGRKLDKNYNEFRRNIKARLIFILKNEGYTLPDQVVDRII 209
Query: 563 DRVNGDIRMAINQLQ 577
DR DIR IN L+
Sbjct: 210 DRNMPDIRSMINDLE 224
>gi|195342330|ref|XP_002037754.1| GM18121 [Drosophila sechellia]
gi|194132604|gb|EDW54172.1| GM18121 [Drosophila sechellia]
Length = 993
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 132/330 (40%), Gaps = 76/330 (23%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE---------------------------K 378
W +KY+P+ +++ ++ + L WL W++
Sbjct: 322 WVDKYKPRKYIDLLSDEMTNRSLLYWLKMWDKVVFGKAFHSKREQEAVTGEGGTAGGAAN 381
Query: 379 FLDTGTKRNGKKQNDAS--------------------AEKAAILSGSPGMGKTTAAKLVC 418
L++ KR GK +++ +K A+L G PG+GKTT A +
Sbjct: 382 HLNSFNKRTGKFESNGGWRQRKSRQALNTNVDALGRPMQKVALLCGPPGLGKTTLAHTIA 441
Query: 419 QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478
+ G+ E+NASD R K++ L + +S+ ++ K P + ++
Sbjct: 442 RHAGYNVREINASDDRSPEAFKLA-------------LENGTQMSSVLNEDKRPNCI-VL 487
Query: 479 DEVDGMSAGDRGGIADLIASIKISKI--------------PIICICNDRYSQKLKSLVNY 524
DE+DG + I+ +K+ PIICICND Y L+ L
Sbjct: 488 DEIDGAPRQSIDYLVKFISDAVYTKVKAKGAKAEHNVLKRPIICICNDVYDPALRPLRQV 547
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
+ F +A+RL++IA E L+ + +L LA++ D+R I+ +Q+ +
Sbjct: 548 AFVVTFPPIDAARLAERLVKIAYKEQLKTDFGSLIALAEKSGNDVRSCISSMQFFNAQKH 607
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ D+ L KD F D +F
Sbjct: 608 SLTLQDVLNNNLGQ-KDRHQGLFAVWDAIF 636
>gi|229582087|ref|YP_002840486.1| replication factor C large subunit [Sulfolobus islandicus
Y.N.15.51]
gi|259585461|sp|C3NHF4.1|RFCL_SULIN RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|228012803|gb|ACP48564.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.N.15.51]
Length = 405
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 127/277 (45%), Gaps = 44/277 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W KYRP++ ++ K+L W+ W NGK KA +L
Sbjct: 2 IQWFLKYRPRSLKDVENQDGAKKELQEWIESW----------LNGKPN-----AKAVLLH 46
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A+ V + +E+NASDSR D K G + S+ +
Sbjct: 47 GPPGVGKTTLAEAVAHDYNLELLEMNASDSRKLQDIK-----GVAEKASVYGSIFGT--- 98
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
R K ++++DEVDG++ D G I ++ I+ +K PII ND ++ L+ L
Sbjct: 99 ----RGK----LILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDPWNPALRELR 150
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ----- 577
N + K K + + L +I AE + ++ AL + D GD R AIN LQ
Sbjct: 151 NKTKMVGLNKLGKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDTRYAINMLQGIGEG 210
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
Y ++L +++ ++ K+ ++ PF + +F
Sbjct: 211 YGKVTLDLVE-------AMARRKERELDPFETLRDIF 240
>gi|219118332|ref|XP_002179943.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408996|gb|EEC48929.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1015
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 147/339 (43%), Gaps = 75/339 (22%)
Query: 346 WTEKYRPKTPNEIVG----NQQLVKQLHTWLAH-------------WNEKFLD------- 381
W +K+ P + ++ N+++V+ L W + ++ K D
Sbjct: 300 WVDKHAPTSFAHLLSDERTNREVVRALRAWDPYVFRRDPPPRPDFGYSAKPSDFHSDRKN 359
Query: 382 ---TGTKRNGKKQNDASAE--KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436
+G R+ +Q+ E + +LSG PG+GKTT A +V + G++ +EVN SD R
Sbjct: 360 EHGSGKSRDSSRQDRRPEESCRVILLSGPPGVGKTTLAHIVARHAGYRPLEVNGSDERSA 419
Query: 437 ADAKISKGIGGSNANSIKELVSNEALSANMDRSKH---------PK-TVLIMDEVDGMSA 486
+ +++ I ++ + S +A M RS H PK +I+DE+DG A
Sbjct: 420 --SALTERI-------VRAMESTTLHTAKMRRSVHNHECKDDSLPKPNCVILDEIDGADA 470
Query: 487 GDRGGI--------ADLIASIKISKI-----PIICICNDRYSQKLKSLVNYCSDLRFRKP 533
+G I AD+ A + SK P+I ICN++Y+ L++L+ Y P
Sbjct: 471 --KGSIQAIVNIIRADIPAKSQASKAQYLRRPLILICNNKYAPTLRALLPYAKAFHVNPP 528
Query: 534 RKQEIAKRLMQIANAEGLEV--NEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
+ RL + AE L L +L +GDIR ++ LQ+ S
Sbjct: 529 SPARLVARLRSVLTAENLTAGGGSSLLNQLVSVASGDIRSCLHTLQFAS----------S 578
Query: 592 RQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLS 630
R + L++ +E S D L G G DER D++
Sbjct: 579 RSKELATHAEEAPSVIDLSDSLRGAMSGDGLKDERNDMA 617
>gi|241859994|ref|XP_002416257.1| chromosome transmission fidelity factor, putative [Ixodes
scapularis]
gi|215510471|gb|EEC19924.1| chromosome transmission fidelity factor, putative [Ixodes
scapularis]
Length = 833
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 119/305 (39%), Gaps = 72/305 (23%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN--------------EKFLDTGTKRNGKKQ 391
W EKYRP+ E++ + + + L WL W+ EK GT N
Sbjct: 168 WVEKYRPRHFMELLSDDGVNRTLLQWLKLWDCVVFGRNPKPKPHPEKLQQPGTGNNTFPG 227
Query: 392 NDAS----------------------------AEKAAILSGSPGMGKTTAAKLVCQMLGF 423
N A +K +L G PG+GKTT A ++ + G+
Sbjct: 228 NTAQESFDPWAFHPMKVAMEKKDLELDEHKRPQQKVVLLYGPPGLGKTTLAHVIARHAGY 287
Query: 424 QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG 483
+E+NASD R K + L + + A + + P LI+DE+DG
Sbjct: 288 NVVELNASDDRSPEVFKTT-------------LEAATQMRAVLGQDPRPN-CLIIDEIDG 333
Query: 484 MSAGDRGGIADLIASIKISKI----------------PIICICNDRYSQKLKSLVNYCSD 527
A + ++I S + P+ICICN+ Y L+ L
Sbjct: 334 APAASINMLVNMIKSSGPTNTGTGKKRSRKEGSLLLRPVICICNELYVPALRPLRQIALA 393
Query: 528 LRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIK 587
L F + K +A RL +I E ++ + A+ L ++ D+R ++ LQ++ +
Sbjct: 394 LHFPQIAKTRLASRLQEIMRRERMKGDTAAILALCEKAENDVRSCLSTLQFVQSRKQQLT 453
Query: 588 YDDIR 592
D+R
Sbjct: 454 LTDVR 458
>gi|391345807|ref|XP_003747174.1| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Metaseiulus occidentalis]
Length = 800
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 123/282 (43%), Gaps = 50/282 (17%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKR--------NGKK---QNDA 394
WTEKY+PK+ +++ + L + + WL W+ + K+ N +K Q D
Sbjct: 182 WTEKYKPKSFRDLLSDAALNRMVLQWLKLWDACVFNKEVKKPPPVPQETNERKRFFQRDQ 241
Query: 395 SAE-------------KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKI 441
E +++G PG+GKTT A ++ + G+ +E+NASD R +
Sbjct: 242 LPELNMELDKSRRPVQPVVLVAGPPGLGKTTLAHVLARHSGYNVVELNASDDRSPEAFRS 301
Query: 442 SKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIAS--- 498
+ L S + + +D+ P L++DE+DG + + +++
Sbjct: 302 A-------------LESATQMKSVLDKECRP-NCLVIDEIDGAPSQSIAVLLNMLKPEPA 347
Query: 499 ---------IKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAE 549
K+ P+ICICND + L+ L ++ + Q ++ RL I E
Sbjct: 348 AEGKSKKRKPKVLTRPVICICNDPWGPALRQLRQNAILIQVPSIQTQRLSARLQNILRRE 407
Query: 550 GLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
++ + AL+ LA++ DIR ++ LQ++ + D+
Sbjct: 408 RMKYDSAALQALAEKTGNDIRSCLSTLQFLHSRKGAVSMTDV 449
>gi|124505855|ref|XP_001351041.1| replication factor c protein, putative [Plasmodium falciparum 3D7]
gi|23510684|emb|CAD49069.1| replication factor c protein, putative [Plasmodium falciparum 3D7]
Length = 1167
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 119/259 (45%), Gaps = 50/259 (19%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN-----EKFLDTGTKRNGKK-QNDASAEKA 399
+ EKYR K +E++ ++ + ++ WL WN EK ++T N ++ D E+
Sbjct: 328 FVEKYRAKYFSELLTDESINLEVLLWLKKWNDKIRNEKNINTYNDMNPEQVTKDNDFERV 387
Query: 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSN 459
+L GS G GKTT A ++ F IE+N SD R K I+ +V
Sbjct: 388 LLLGGSSGKGKTTLAYVIANHFKFNIIEINGSDDRNKETL----------IPFIESVVCI 437
Query: 460 EALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK--------ISKIPIICICN 511
++++ + I+DE+DG+S+ + I ++ + I K PIICICN
Sbjct: 438 NSVTS-------KPNLCIIDEIDGLSSTHQ-NIDSIMKFLNKKDKKNKSIIKRPIICICN 489
Query: 512 DRYSQKLKSLVNYCSDLRFRKPRKQEIAK---------RLMQIANAEGLEVNEIALEELA 562
D Y + LK L RK K I + R+ I + E +++N A+ +L
Sbjct: 490 DIYHKSLKEL---------RKISKVVIVENINIEMLKIRINYICDKENIKINNEAINKLI 540
Query: 563 DRVNGDIRMAINQLQYMSL 581
D DIR +N + ++S+
Sbjct: 541 DICKSDIRSILNTIYFLSI 559
>gi|28574716|ref|NP_787969.1| cutlet [Drosophila melanogaster]
gi|28380272|gb|AAN10380.2| cutlet [Drosophila melanogaster]
Length = 993
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 132/330 (40%), Gaps = 76/330 (23%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF-------------------------- 379
W +KY+P+ +++ ++ + L WL W++
Sbjct: 322 WVDKYKPRKYIDLLSDEMTNRSLLYWLKMWDKVVFGKAFHSKREQEAVTGEGGTAGGAAN 381
Query: 380 -LDTGTKRNGKKQNDAS--------------------AEKAAILSGSPGMGKTTAAKLVC 418
L++ KR GK +++ +K A+L G PG+GKTT A +
Sbjct: 382 QLNSFNKRTGKFESNGGWRQRKSRQALNTNVDALGRPMQKVALLCGPPGLGKTTLAHTIA 441
Query: 419 QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478
+ G+ E+NASD R K++ L + +S+ ++ K P + ++
Sbjct: 442 RHAGYNVREINASDDRSPEAFKLA-------------LENGTQMSSVLNEDKRPNCI-VL 487
Query: 479 DEVDGMSAGDRGGIADLIASIKISKI--------------PIICICNDRYSQKLKSLVNY 524
DE+DG + I+ +K+ PIICICND Y L+ L
Sbjct: 488 DEIDGAPRQSIDYLVKFISDAVYTKVKAKGAKAEHNVLKRPIICICNDVYDPALRPLRQV 547
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
+ F +A+RL++IA E L+ + +L LA++ D+R I+ +Q+ +
Sbjct: 548 AFVVTFPPIDAARLAERLVKIAFKEQLKTDFGSLIALAEKSGNDVRSCISSMQFFNAQKH 607
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ D+ L KD F D +F
Sbjct: 608 SLTLQDVLNNNLGQ-KDRHQGLFAVWDAIF 636
>gi|296088871|emb|CBI38383.3| unnamed protein product [Vitis vinifera]
Length = 880
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 102/222 (45%), Gaps = 27/222 (12%)
Query: 375 WNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434
WN+K TG +K +L G PG+GKTT A + + G++ +E+NASD R
Sbjct: 406 WNKKSRGTGPPE----------QKILLLCGPPGLGKTTLAHVAAKHCGYRVVEINASDDR 455
Query: 435 GKADAKISKGIGGSNANSIKE------LVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD 488
+ + +K + NS+ LV +E A D + +L M + +
Sbjct: 456 SSSTIE-AKILDVVQMNSVMADSKPNCLVIDEIDGALSDGKGAVEVILKMVSTERKADNR 514
Query: 489 RGGIADLIASIKISKI----------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEI 538
+G +A + S +IS P+ICICND Y+ L+ L F +P +
Sbjct: 515 KGNVAKVDESGQISSKKGHKTASLSRPVICICNDLYAPALRPLRQVAKVHIFVQPTVSRV 574
Query: 539 AKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
RL I N EGL+ N AL LA+ DIR +N LQ+++
Sbjct: 575 VSRLKYICNMEGLKTNSTALAALAEYTECDIRSCLNTLQFLN 616
>gi|15617460|gb|AAL02426.1|AF287273_1 DNA replication accessory factor Cutlet [Drosophila melanogaster]
Length = 993
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 132/330 (40%), Gaps = 76/330 (23%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF-------------------------- 379
W +KY+P+ +++ ++ + L WL W++
Sbjct: 322 WVDKYKPRKYIDLLSDEMTNRSLLYWLKMWDKVVFGKAFHSKREQEAVTGEGGTAGGAAN 381
Query: 380 -LDTGTKRNGKKQNDAS--------------------AEKAAILSGSPGMGKTTAAKLVC 418
L++ KR GK +++ +K A+L G PG+GKTT A +
Sbjct: 382 QLNSFNKRTGKFESNGGWRQRKSRQALNTNVDALGRPMQKVALLCGPPGLGKTTLAHTIA 441
Query: 419 QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478
+ G+ E+NASD R K++ L + +S+ ++ K P + ++
Sbjct: 442 RHAGYNVREINASDDRSPEAFKLA-------------LENGTQMSSVLNEDKRPNCI-VL 487
Query: 479 DEVDGMSAGDRGGIADLIASIKISKI--------------PIICICNDRYSQKLKSLVNY 524
DE+DG + I+ +K+ PIICICND Y L+ L
Sbjct: 488 DEIDGAPRQSIDYLVKFISDAVYTKVKAKGAKAEHNVLKRPIICICNDVYDPALRPLRQV 547
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
+ F +A+RL++IA E L+ + +L LA++ D+R I+ +Q+ +
Sbjct: 548 AFVVTFPPIDAARLAERLVKIAFKEQLKTDFGSLIALAEKSGNDVRSCISSMQFFNAQKH 607
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ D+ L KD F D +F
Sbjct: 608 SLTLQDVLNNNLGQ-KDRHQGLFAVWDAIF 636
>gi|158299494|ref|XP_319609.4| AGAP008869-PA [Anopheles gambiae str. PEST]
gi|157013545|gb|EAA14898.4| AGAP008869-PA [Anopheles gambiae str. PEST]
Length = 999
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 136/334 (40%), Gaps = 79/334 (23%)
Query: 323 ERMKTVASPAKRKGQNI--QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF- 379
E +A+PA + + +S++ W EKYRP+ +++ ++ + L WL W++
Sbjct: 287 EPANAIAAPASEVEEIVIPSESNVLWVEKYRPRRYIDLLSDETTNRSLLQWLKLWDKAVF 346
Query: 380 --------------LDTGTKRNGKKQND----------------------ASAEKAAILS 403
L K+ G+ +++ +K A+L+
Sbjct: 347 GREPVKKQKDPKTQLSNFNKKTGRFESNGGWVKGARKARSTLNTELDEHGCPVQKVALLA 406
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A + + G+ EVNASD R ++ N +K +++ E
Sbjct: 407 GPPGLGKTTLAHTIARHAGYAVREVNASDDRSPDAFRLVL----ENGTQMKSVLNEE--- 459
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK----------------------- 500
+ P + ++DE+DG + IA
Sbjct: 460 ------RRPNCI-VLDEIDGAPVAAIEFLLRFIAGNVGAAKAAGAAGSGGGVKKTGKAAR 512
Query: 501 ---ISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIA 557
+ K PIICICND Y+ L+ L + F +A+RL+ IA E ++ + +
Sbjct: 513 DKFVLKRPIICICNDMYAPALRQLRQVAYVVNFPPTEGVRLAERLLVIAKKERIKTDLTS 572
Query: 558 LEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
+ LA++ D+R ++ LQ+ + + I+ D+
Sbjct: 573 MLALAEKTGNDVRACLSMLQFFACANKPIRLTDV 606
>gi|198474425|ref|XP_001356680.2| GA17299 [Drosophila pseudoobscura pseudoobscura]
gi|198138387|gb|EAL33745.2| GA17299 [Drosophila pseudoobscura pseudoobscura]
Length = 1002
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/362 (22%), Positives = 144/362 (39%), Gaps = 86/362 (23%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF-------------------------- 379
W +KY+P+ +++ ++ + L WL W++
Sbjct: 319 WVDKYKPRKYIDLLSDEMTNRSLLYWLKMWDKVVFGKPFHSKQEQEAVTGGGPAGGGGGG 378
Query: 380 -----LDTGTKRNGKKQNDA--------------------SAEKAAILSGSPGMGKTTAA 414
L++ KR GK +++ +K A+L G PG+GKTT A
Sbjct: 379 GANTQLNSFNKRTGKFESNGGWRQRKARQALNTNVDAMGRPMQKVALLCGPPGLGKTTLA 438
Query: 415 KLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474
+ + G+ E+NASD R K++ L + +S+ ++ K P
Sbjct: 439 HTIARHAGYNVREINASDDRSPEAFKLA-------------LENGTQMSSVLNADKRPNC 485
Query: 475 VLIMDEVDGMSAGDRGGIADLIASIK-----------------ISKIPIICICNDRYSQK 517
+ ++DE+DG R I L+ + + + PIICICND Y
Sbjct: 486 I-VLDEIDG---APRQSIEYLVKFVNDDVHSKAKAKGAKSEHNVLRRPIICICNDIYDPA 541
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
L+ L + F +A+RL +IA E L+ + +L LA++ D+R I+ +Q
Sbjct: 542 LRPLRQIAFVVTFPPIDAARLAERLGKIAQKEQLKTDFGSLITLAEKSGNDVRSCISSMQ 601
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLV 637
+ + + D+ L KD S FT D +F K ++ + + +P LV
Sbjct: 602 FFNAQKQSLTLQDVLNNNLGQ-KDRHQSLFTVWDSIFRIQRPKKQLQTDTNGTGDEPALV 660
Query: 638 PL 639
+
Sbjct: 661 TM 662
>gi|238619813|ref|YP_002914639.1| replication factor C large subunit [Sulfolobus islandicus M.16.4]
gi|259585253|sp|C4KHA7.1|RFCL_SULIK RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|238380883|gb|ACR41971.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.4]
Length = 405
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 127/277 (45%), Gaps = 44/277 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W KYRP++ ++ K+L W+ W NGK KA +L
Sbjct: 2 IQWFLKYRPRSLKDVENQDGAKKELQEWIESW----------LNGKPN-----AKAVLLH 46
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A+ + + +E+NASDSR D K S+ E S S
Sbjct: 47 GPPGVGKTTLAEALAHDYNLELLEMNASDSRKLQDIK-----------SVAEKASVYG-S 94
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
R K ++++DEVDG++ D G I ++ I+ +K PII ND ++ L+ L
Sbjct: 95 IFGTRGK----LILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDPWNPALRELR 150
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ----- 577
N + K K + + L +I AE + ++ AL + D GD R AIN LQ
Sbjct: 151 NKTKMVGLNKLGKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDARYAINMLQGIGEG 210
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
Y ++L +++ ++ K+ ++ PF + +F
Sbjct: 211 YGKVTLDLVE-------AMARRKERELDPFETLRDIF 240
>gi|385773315|ref|YP_005645881.1| AAA ATPase [Sulfolobus islandicus HVE10/4]
gi|385775947|ref|YP_005648515.1| AAA ATPase [Sulfolobus islandicus REY15A]
gi|323474695|gb|ADX85301.1| AAA ATPase central domain protein [Sulfolobus islandicus REY15A]
gi|323477429|gb|ADX82667.1| AAA ATPase central domain protein [Sulfolobus islandicus HVE10/4]
Length = 405
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 127/277 (45%), Gaps = 44/277 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W KYRP++ ++ K+L W+ W NGK KA +L
Sbjct: 2 IQWFLKYRPRSLKDVENQDGAKKELQEWIESW----------LNGKPN-----AKAVLLH 46
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A+ + + +E+NASDSR D K S+ E S S
Sbjct: 47 GPPGVGKTTLAEALAHDYNLELLEMNASDSRKLQDIK-----------SVAEKASVYG-S 94
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
R K ++++DEVDG++ D G I ++ I+ +K PII ND ++ L+ L
Sbjct: 95 IFGTRGK----LILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDPWNPALRELR 150
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ----- 577
N + K K + + L +I AE + ++ AL + D GD R AIN LQ
Sbjct: 151 NKTKMVGLNKLGKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDARYAINMLQGIGEG 210
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
Y ++L +++ ++ K+ ++ PF + +F
Sbjct: 211 YGKVTLDLVE-------AMARRKERELDPFETLRDIF 240
>gi|357120148|ref|XP_003561791.1| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Brachypodium distachyon]
Length = 944
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 98/219 (44%), Gaps = 45/219 (20%)
Query: 392 NDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNAN 451
++A +K +L G G+GKTT A + + G+ +E+NASD R + + K + N
Sbjct: 323 DNAPEQKVLLLCGPAGLGKTTLAHVAAKHCGYHVVEINASDDRSASSIE-PKILDVVQMN 381
Query: 452 SIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI------------ 499
SI M SK PK L++DE+DG +G + ++ I
Sbjct: 382 SI------------MSDSK-PK-CLVIDEIDGALGDGKGAVEVILKMINAEKNNNSDRST 427
Query: 500 ----------------KISKI--PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
+I+K+ P+ICICND Y+ L+ L F +P + R
Sbjct: 428 GGEETQVQKSSSRKGHRIAKLLRPVICICNDLYAPALRKLRQVAKVHIFVQPTISRVVNR 487
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
L I EG + + IAL LAD DIR +N LQ+++
Sbjct: 488 LKYICKKEGFKTSSIALSALADYTECDIRSCLNTLQFLN 526
>gi|392571020|gb|EIW64192.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 345
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 48/256 (18%)
Query: 330 SPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGK 389
+PA N+ L W EKYRP+ +++VGN +++L R+G
Sbjct: 10 APANGNAANLPNYELPWVEKYRPQVLDDVVGNTDTIERLKI-------------IARDGN 56
Query: 390 KQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQ--AIEVNASDSRGKADAKISKG 444
+ I+SG PG+GKTT+ + L G++ +E+NASD RG +
Sbjct: 57 CPH-------IIISGMPGIGKTTSIHCLAHQLLGDGYKEGVLELNASDERGIDVVR---- 105
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGI---ADLIASIKI 501
N IK + + +H ++I+DE D M+AG + + ++ A+
Sbjct: 106 ------NKIKSFAQKKV---TLPPGRH--KIVILDEADSMTAGAQQALRRTMEIYANT-- 152
Query: 502 SKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEEL 561
++ + C +++ + ++S C+ LR+ K R QE+ KRL++I E +E + LE L
Sbjct: 153 TRFALACNMSNKIIEPIQS---RCAILRYSKLRDQEVLKRLLEICEMEKVEYSNEGLEAL 209
Query: 562 ADRVNGDIRMAINQLQ 577
GD+R AIN LQ
Sbjct: 210 IFTAEGDMRQAINNLQ 225
>gi|424812316|ref|ZP_18237556.1| replication factor C large subunit [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756538|gb|EGQ40121.1| replication factor C large subunit [Candidatus Nanosalinarum sp.
J07AB56]
Length = 396
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 154/360 (42%), Gaps = 55/360 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W +KYRP++ ++ G + ++L W W + + +L
Sbjct: 1 MMWVKKYRPESLSDYRGASKEKEKLREWAEDWEK------------------GDGPTLLH 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G G GKT+ + + L + +E NASD R K + E L
Sbjct: 43 GQAGTGKTSLVEALANDLDMELVETNASDVRTKTKLR------------------EELLE 84
Query: 464 ANMDRSKHPKTVLIM-DEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
+ RS K LI+ DEVDGMS DRGG + + ++ S+ P++ ND Y K+K+L
Sbjct: 85 SVRQRSFLGKEKLILVDEVDGMSGNADRGGTSLIREIVEESRFPVVMTANDPYESKIKTL 144
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
+ IA L +I EG+E A + LA + +G +R AIN L+ ++
Sbjct: 145 RQMSEMIELGSVHTNSIAAHLREILEEEGIEYEGGAPKRLARQADGQMRSAINDLEAVAR 204
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG--GKLRMDERIDLSMSDPDLVPL 639
+ + DDI +S +D+ F ++ +F + E +D +P+
Sbjct: 205 GRNRVSVDDIED---ASRRDDRKEVFDSLKIVFKTETPDNARQATENLD---ENPETWMQ 258
Query: 640 LIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCI 699
++EN P G+ + IA +++S D+FN ++RR W L + L + +
Sbjct: 259 WVRENL----PREYGKSQD-----IADGMDAVSGADLFNGRVRRTMNWSLMRYVYLYTTV 309
>gi|167860135|ref|NP_001103572.2| CTF18, chromosome transmission fidelity factor 18 homolog [Danio
rerio]
Length = 957
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 121/293 (41%), Gaps = 69/293 (23%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTK------------RNGK 389
SS W +++ P+ +++ + + L WL W+ K N +
Sbjct: 276 SSRLWVDQFSPQHYTDLLSDDFTNRCLLKWLKLWDTVVFGRERKSRPVPVEARSNFTNAQ 335
Query: 390 KQNDAS--------------AE---------KAAILSGSPGMGKTTAAKLVCQMLGFQAI 426
QN A AE K A+LSG PG+GKTT A ++ + G+ +
Sbjct: 336 NQNQAQRFKTKSQMTEEILEAELDQYKRPKFKVALLSGPPGLGKTTLAHIIAKHAGYNVV 395
Query: 427 EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA 486
E+NASD R S + ++ ++ S L AN LI+DE+DG A
Sbjct: 396 EINASDDR-------SAELFQKRIDTATQMKS--VLGAN-----EKPNCLIIDEIDGAPA 441
Query: 487 -----------------GDRGGIADLIASIKISKI---PIICICNDRYSQKLKSLVNYCS 526
G+ G+ L K + PIICICND Y L+ L
Sbjct: 442 AAINILLATLNRKDSKDGEETGVNALKKKKKKQSVLLRPIICICNDLYVPALRPLRQQAF 501
Query: 527 DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L F + +A+RL +I+ +G++ + L L ++ + DIR IN LQ++
Sbjct: 502 LLVFPQTLPSRLAQRLAEISRRQGMKADTGTLMALCEKTDNDIRSCINTLQFL 554
>gi|227830341|ref|YP_002832121.1| replication factor C large subunit [Sulfolobus islandicus L.S.2.15]
gi|229579158|ref|YP_002837556.1| replication factor C large subunit [Sulfolobus islandicus
Y.G.57.14]
gi|284997766|ref|YP_003419533.1| ATPase AAA, central domain protein [Sulfolobus islandicus L.D.8.5]
gi|259585236|sp|C3MQ13.1|RFCL_SULIL RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|259585591|sp|C3NE95.1|RFCL_SULIY RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|227456789|gb|ACP35476.1| AAA ATPase central domain protein [Sulfolobus islandicus L.S.2.15]
gi|228009872|gb|ACP45634.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.G.57.14]
gi|284445661|gb|ADB87163.1| AAA ATPase, central domain protein [Sulfolobus islandicus L.D.8.5]
Length = 405
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 127/277 (45%), Gaps = 44/277 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W KYRP++ ++ K+L W+ W NGK KA +L
Sbjct: 2 IQWFLKYRPRSLKDVENQDGAKKELQEWIESW----------LNGKPN-----AKAVLLH 46
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A+ + + +E+NASDSR D K G + S+ +
Sbjct: 47 GPPGVGKTTLAEALAHDYNLELLEMNASDSRKLQDIK-----GVAEKASVYGSIFGT--- 98
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
R K ++++DEVDG++ D G I ++ I+ +K PII ND ++ L+ L
Sbjct: 99 ----RGK----LILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDPWNPALRELR 150
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ----- 577
N + K K + + L +I AE + ++ AL + D GD R AIN LQ
Sbjct: 151 NKTKMVGLNKLGKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDARYAINMLQGIGEG 210
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
Y ++L +++ ++ K+ ++ PF + +F
Sbjct: 211 YGKVTLDLVE-------AMARRKERELDPFETLRDIF 240
>gi|255554168|ref|XP_002518124.1| chromosome transmission fidelity factor, putative [Ricinus
communis]
gi|223542720|gb|EEF44257.1| chromosome transmission fidelity factor, putative [Ricinus
communis]
Length = 813
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 100/215 (46%), Gaps = 49/215 (22%)
Query: 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
+K +L G PG+GKTT A + + G++ +EVNASD R + + +K + NSI
Sbjct: 327 QKILLLCGPPGLGKTTLAHVAAKHCGYRVVEVNASDDRSSSTIE-AKILDVVQMNSI--- 382
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIA------------------- 497
M S+ PK L++DE+DG + GD G ++I
Sbjct: 383 ---------MADSR-PKC-LVIDEIDG-ALGDGKGAVEVILKMVSAERKSNTGKENVAKG 430
Query: 498 -------------SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544
++ +S+ P+ICICND Y+ L+ L F +P + RL
Sbjct: 431 DQSGKISAKKGRKTVSLSR-PVICICNDLYAPVLRPLRQVAKVHIFVQPTVSRVVNRLKF 489
Query: 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
I EG++V+ IAL LAD DIR +N LQ++
Sbjct: 490 ICKKEGMKVSSIALTALADYAECDIRSCLNTLQFL 524
>gi|82540736|ref|XP_724663.1| ATPase, AAA family [Plasmodium yoelii yoelii 17XNL]
gi|23479384|gb|EAA16228.1| ATPase, AAA family, putative [Plasmodium yoelii yoelii]
Length = 1049
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 118/256 (46%), Gaps = 36/256 (14%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE----- 397
++ + EKYR K +E++ ++ + +++ W+ WN+ L K K N+ +
Sbjct: 253 NINFVEKYRGKYFSELLTDETINREVLLWIKQWND--LIKKEKEIMYKNNEEEKKEYLKK 310
Query: 398 -----KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANS 452
K +L GS G GKTT A ++ F IE+N SD R K
Sbjct: 311 FNDFPKILLLGGSAGKGKTTLAYVIANHFKFNVIEINGSDDRNKETL----------IPF 360
Query: 453 IKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG--GIADLI-----ASIKISKIP 505
I+ +V N ++ + + I+DE+DG+S+ + I + + ++ I K P
Sbjct: 361 IESIVCNNSIGS-------KPNICIIDEIDGLSSTYQNIEAIMNFLNKKDKKNMSIIKRP 413
Query: 506 IICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV 565
IICICND Y + LK L + Q + R+ I + E ++++ A+ +L D
Sbjct: 414 IICICNDIYHKTLKELRKISKVVLVENVNIQMLKGRINYICDKENIKISNEAINKLIDIY 473
Query: 566 NGDIRMAINQLQYMSL 581
D+R +N + ++S+
Sbjct: 474 KSDVRAILNTIYFLSI 489
>gi|68074549|ref|XP_679190.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56499871|emb|CAI00274.1| hypothetical protein PB000834.03.0 [Plasmodium berghei]
Length = 493
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 116/258 (44%), Gaps = 36/258 (13%)
Query: 336 GQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDAS 395
Q + ++ + EKYR K +E++ ++ + ++ W+ WN+ L K K N+
Sbjct: 254 SQKMLTENVNFVEKYRGKYFSELLTDEAINREAILWIKQWND--LIKKEKEVIYKNNEEE 311
Query: 396 AE----------KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI 445
+ K +L GS G GKTT A ++ F IE+N SD R K
Sbjct: 312 KKEYFKKFNEFPKILLLGGSAGKGKTTLAYVIANHFKFNVIEINGSDDRNKETL------ 365
Query: 446 GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG--GIADLI-----AS 498
I+ +V N ++ + + I+DE+DG+S+ + I + + +
Sbjct: 366 ----IPFIESIVCNNSIGS-------KPNICIIDEIDGLSSTYQNIEAIMNFLNKKDKKN 414
Query: 499 IKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIAL 558
+ I K PIICICND Y + LK L C + Q + R+ I + E ++++ A+
Sbjct: 415 MSIIKRPIICICNDIYHKSLKELRKICKVVLVENINIQMLKGRINYICDKENIKISNEAI 474
Query: 559 EELADRVNGDIRMAINQL 576
+L D DIR +N +
Sbjct: 475 NKLIDIYKSDIRAILNTI 492
>gi|227827645|ref|YP_002829425.1| replication factor C large subunit [Sulfolobus islandicus M.14.25]
gi|229584849|ref|YP_002843351.1| replication factor C large subunit [Sulfolobus islandicus M.16.27]
gi|259585252|sp|C3N5N1.1|RFCL_SULIA RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|259585254|sp|C3MVD2.1|RFCL_SULIM RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|227459441|gb|ACP38127.1| AAA ATPase central domain protein [Sulfolobus islandicus M.14.25]
gi|228019899|gb|ACP55306.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.27]
Length = 405
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 127/277 (45%), Gaps = 44/277 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W KYRP++ ++ K+L W+ W NGK KA +L
Sbjct: 2 IQWFLKYRPRSLKDVENQDGAKKELQEWIESW----------LNGKPN-----AKAVLLH 46
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A+ + + +E+NASDSR D K S+ E S S
Sbjct: 47 GPPGVGKTTLAEALAHDYNLELLEMNASDSRKLQDIK-----------SVAEKASVYG-S 94
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
R K ++++DEVDG++ D G I ++ I+ +K P+I ND ++ L+ L
Sbjct: 95 IFGTRGK----LILLDEVDGINVREDTGAIQGILELIEKTKYPLIMTANDPWNPALRELR 150
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ----- 577
N + K K + + L +I AE + ++ AL + D GD R AIN LQ
Sbjct: 151 NKTKMVGLNKLGKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDARYAINMLQGIGEG 210
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
Y ++L +++ ++ K+ ++ PF + +F
Sbjct: 211 YGKVTLDLVE-------AMARRKERELDPFETLRDIF 240
>gi|156063576|ref|XP_001597710.1| hypothetical protein SS1G_01906 [Sclerotinia sclerotiorum 1980]
gi|154697240|gb|EDN96978.1| hypothetical protein SS1G_01906 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1006
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 117/268 (43%), Gaps = 42/268 (15%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE-KFLDTG------TKRNGKKQNDAS 395
SL WTEKYR + E+ G+ + +Q+ WL W+ F G TK+ G+ ++
Sbjct: 242 SLMWTEKYRARHFMELCGDDRTHRQVLRWLKAWDPIVFPKAGKPKVAPTKKFGEVDDEKP 301
Query: 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK--ADAKISKGIGGSNANSI 453
K +L+G PG+GKTT A + + G++ +E+NASD R + +I +G N +
Sbjct: 302 HRKILMLTGPPGLGKTTLAHVCARQAGYEVMEINASDERSRDVVKGRIRTSVGTENVKTG 361
Query: 454 KELVSNEALSANMDRSKHPKT---------------------------VLIMDEVDGMSA 486
+ S S ++ ++ HP ++++D+ + +
Sbjct: 362 STVTSK---SGHVSKNAHPLCVVVDEVDGVVGGAGGSGEGGFIKALIDLILLDQKNSSTV 418
Query: 487 GDRGGIADLIASIKISKI-PIICICNDRYSQKLKSLVN--YCSDLRFRKPRKQEIAKRLM 543
G + + P+I ICND Y L+ L N + + RKP + +R+
Sbjct: 419 GTNTSYSKKKKGDDFRLLRPLILICNDVYHPSLRPLRNSSFAEVIHIRKPPLDAVVQRMQ 478
Query: 544 QIANAEGLEVNEIALEELADRVNGDIRM 571
+ EG+ + A+ +L + G RM
Sbjct: 479 TVFEKEGVSCDSDAIRQLCEATWGISRM 506
>gi|20151923|gb|AAM11321.1| SD07712p [Drosophila melanogaster]
Length = 874
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 132/330 (40%), Gaps = 76/330 (23%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF-------------------------- 379
W +KY+P+ +++ ++ + L WL W++
Sbjct: 203 WVDKYKPRKYIDLLSDEMTNRSLLYWLKMWDKVVFGKAFHSKREQEAVTGEGGTAGGAAN 262
Query: 380 -LDTGTKRNGKKQNDAS--------------------AEKAAILSGSPGMGKTTAAKLVC 418
L++ KR GK +++ +K A+L G PG+GKTT A +
Sbjct: 263 QLNSFNKRTGKFESNGGWRQRKSRQALNTNVDALGRPMQKVALLCGPPGLGKTTLAHTIA 322
Query: 419 QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478
+ G+ E+NASD R K++ L + +S+ ++ K P + ++
Sbjct: 323 RHAGYNVREINASDDRSPEAFKLA-------------LENGTQMSSVLNEDKRPNCI-VL 368
Query: 479 DEVDGMSAGDRGGIADLIASIKISKI--------------PIICICNDRYSQKLKSLVNY 524
DE+DG + I+ +K+ PIICICND Y L+ L
Sbjct: 369 DEIDGAPRQSIDYLVKFISDAVYTKVKAKGAKAEHNVLKRPIICICNDVYDPALRPLRQV 428
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
+ F +A+RL++IA E L+ + +L LA++ D+R I+ +Q+ +
Sbjct: 429 AFVVTFPPIDAARLAERLVKIAFKEQLKTDFGSLIALAEKSGNDVRSCISSMQFFNAQKH 488
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ D+ L KD F D +F
Sbjct: 489 SLTLQDVLNNNLGQ-KDRHQGLFAVWDAIF 517
>gi|395333885|gb|EJF66262.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 743
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 127/301 (42%), Gaps = 68/301 (22%)
Query: 329 ASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNG 388
A P+K N ++ W ++YRP E++G+ ++ +++ W+ W+ R
Sbjct: 67 AQPSKPVQLNTTNNANLWVDRYRPSRFTELLGDDRVHREVLAWVKEWDCCVFGKNKNRGR 126
Query: 389 KKQNDAS-----------AEKAAILSGS-------------PGMGKTTAAKLVCQMLGFQ 424
K+ D + EKA+ SGS PG+GKTT A +V Q G+
Sbjct: 127 KRARDDADGENLDQWQRPREKAS--SGSFRLPPFLLLLSGPPGLGKTTLAHVVAQHAGYN 184
Query: 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGM 484
E+NASD+R +A+ + + + S S P V+I DE+DG
Sbjct: 185 VFEINASDAR--------------SADVVDDRIRPALESGARIGSSKPNLVVI-DEIDGA 229
Query: 485 SAGD---RGGIADLI-----------------------ASIKISKIPIICICNDRYSQKL 518
+ G G I LI A+ + + PIICICND Y+ L
Sbjct: 230 TGGSDSSSGFIHKLIQLTQDRPQKKMAGGRNPHKSGGDAARPVLR-PIICICNDLYAASL 288
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
L + +RF +P + +RL +I EG++ + AL L GD R +N LQ
Sbjct: 289 TKLRQHARIVRFSRPHDTHVVRRLREICEREGVKADARALATLVGVAQGDFRGCLNTLQM 348
Query: 579 M 579
+
Sbjct: 349 L 349
>gi|393912338|gb|EFO22418.2| hypothetical protein LOAG_06066 [Loa loa]
Length = 782
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 123/267 (46%), Gaps = 33/267 (12%)
Query: 331 PAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGT------ 384
P +G+++ W EKY P T +++ ++ + + L WL W+E
Sbjct: 190 PEGVEGESVFIQDDLWVEKYAPHTYADLISDETVNRLLLNWLRLWDECVFHRAIPDFVLR 249
Query: 385 KRNGKKQNDASAEK-------AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA 437
+ ++Q S+EK +L+G G GKTT A LV Q G++ + +NASD R
Sbjct: 250 STSNQQQLILSSEKPRRPSHKVVLLAGPAGTGKTTLATLVAQHTGYRVVSLNASDERNTV 309
Query: 438 DAKISKGIGGSNANSIKELVSNEAL--SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADL 495
D E +AL + +D P LI+DE+DG +
Sbjct: 310 DF---------------EKCFEDALRTTRTLDADSKPNC-LILDEIDGAPTQSIHYLCKA 353
Query: 496 IASIKISKI--PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEV 553
+ + + P+ICICN+ Y+ L+ L L+ + ++ + KRL +I+ E L+V
Sbjct: 354 VTAAGRHSLRRPVICICNNLYTPSLRELRLIALVLQLSRTDEKRLTKRLQEISKLEHLKV 413
Query: 554 NEIALEELADRVNGDIRMAINQLQYMS 580
AL E+ D + D+R AIN LQ+++
Sbjct: 414 EPSALSEIIDVCSRDLRSAINNLQFIA 440
>gi|315427382|dbj|BAJ48991.1| replication factor C large subunit [Candidatus Caldiarchaeum
subterraneum]
Length = 352
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 126/269 (46%), Gaps = 36/269 (13%)
Query: 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEV 481
G++ IE NASD R + + I + +G ++ + S M + K ++++DEV
Sbjct: 9 GYEVIETNASDFRTREN--IERIVGAASGMA----------SLTMGQRK----IILVDEV 52
Query: 482 DGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK 540
DG+ A D G + L I + +P++ + ND + +L L + C ++FR+ K +A
Sbjct: 53 DGIDARADAGAVTSLADIISKTHVPVVLVANDPWDPRLAPLRDACLMIQFRRIPKPSVAA 112
Query: 541 RLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAK 600
L +IA AE + V E L + + GD+R AIN LQ S +L + L++ ++
Sbjct: 113 HLKKIAAAENVRVPEDVLRRIVENSEGDLRSAINDLQMASAALEM--------GLVTGSR 164
Query: 601 DEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKR 660
D FTA+ +F + ++ + +L+ +++ P+
Sbjct: 165 DRKDEIFTALATIFNAKSFNTAQEAARNIDIDHSELMQWILENAPQQLSPTD-------- 216
Query: 661 LSLIARAAESISDGDIFNVQIRRNQQWQL 689
+A A E+++ D++ +I Q WQL
Sbjct: 217 ---LAEALENLAKADLYLQRINTRQNWQL 242
>gi|198415516|ref|XP_002120609.1| PREDICTED: similar to CTF18, chromosome transmission fidelity
factor 18 homolog [Ciona intestinalis]
Length = 902
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 112/248 (45%), Gaps = 40/248 (16%)
Query: 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
K A+L G PG+GKTT A ++ + G+ +E+NASD R A + K+ +
Sbjct: 386 KTALLCGPPGLGKTTLAHIIAKHAGYHVVEMNASDDRS--------------AETFKQKL 431
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDG---------MSAGDRGGIADLIASIKISKI---- 504
++ S LI+DE+DG ++A ++G + + + K
Sbjct: 432 EQTTQMKSVLGSDQRPNCLIIDEIDGAPQAAINVLLNAFNKGKLTEKKKTNKKKSSGFLL 491
Query: 505 -PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELAD 563
PIICICND Y L+ L L+F +A RL Q+ + ++ + +L L D
Sbjct: 492 RPIICICNDLYVPALRQLRQQSYILQFPPTTSAMLASRLSQMCRVQQMDCDLTSLLALCD 551
Query: 564 RVNGDIRMAINQLQYMS------LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFN 617
+ DIR IN LQ++ L L IK DI Q KD+ S F +++F
Sbjct: 552 KSGNDIRTCINTLQFVQSTGKNKLKLETIKSLDIGQ------KDQHKSIFYVWNEIFQLP 605
Query: 618 GGKLRMDE 625
+ ++D+
Sbjct: 606 KNQRKIDQ 613
>gi|326491233|dbj|BAK05716.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 939
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 97/219 (44%), Gaps = 45/219 (20%)
Query: 392 NDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNAN 451
++A +K +L G G+GKTT A + + G+ +E+NASD R + + K + N
Sbjct: 317 DNAPEQKVLLLCGPAGLGKTTLAHVAAKHCGYHVVEINASDDRSASSIE-PKILDVVQMN 375
Query: 452 SIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI------------ 499
SI M SK PK L++DE+DG +G + ++ I
Sbjct: 376 SI------------MSDSK-PK-CLVIDEIDGALGDGKGAVEVILKMINADKNNNLDRST 421
Query: 500 ----------------KISKI--PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
K +K+ P+ICICND Y+ L+ L F +P + R
Sbjct: 422 GAEETQVQKASSRKSHKTAKLLRPVICICNDLYAPALRKLRQVAKVHIFVQPTISRVVNR 481
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
L I EG + + IAL LAD DIR +N LQ+++
Sbjct: 482 LKYICKKEGFKTSSIALSALADYTECDIRSCLNTLQFLN 520
>gi|156404594|ref|XP_001640492.1| predicted protein [Nematostella vectensis]
gi|156227626|gb|EDO48429.1| predicted protein [Nematostella vectensis]
Length = 602
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 98/442 (22%), Positives = 171/442 (38%), Gaps = 102/442 (23%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL----------------------DTG 383
W EKY P+ E++ + + + L WL W++ +
Sbjct: 20 WVEKYSPRHFTELLSDDAINRTLLQWLKLWDKVVFRRERKPVKHQPKEQKSNMDKKHNKD 79
Query: 384 TKRNGKKQNDASA-------------EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
++ GK D+ A K A+L G PG+GKTT A ++ Q G+ +E+NA
Sbjct: 80 FRKFGKGGLDSDAWTVSSFDDNGYPVHKVALLCGPPGLGKTTLAHVIAQHAGYNVVEMNA 139
Query: 431 SDSRG--------KADAKISKGIGGS---NANSIKEL--VSNEALSANMDRSKHPKTVLI 477
SD R + ++ +G + N I E+ A++ + K ++V I
Sbjct: 140 SDDRAVEVFRQKIEVATQMKSVLGANERPNCLVIDEIDGAPTPAINVLLSVLKQKQSVFI 199
Query: 478 MDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQE 537
+ +DG ++ ++ P+ICICND++ L+ L F +
Sbjct: 200 L--LDGGEVKKGKKKKKILQLLR----PVICICNDQFVPSLRQLRQQALVAVFPQTIPGR 253
Query: 538 IAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS-----LSLSVIKYDDIR 592
++ RL++IA EG+ + L L D+ DIR +N LQ++ L+L ++ +
Sbjct: 254 LSSRLLEIARREGVSTDMTTLLALCDKAENDIRSCLNTLQFVHRRHGKLALEHVQSTTVG 313
Query: 593 QRLL------------------------------SSAKDEDISPFTA-----VDKLFGFN 617
Q+ L + + EDI FT+ VD +
Sbjct: 314 QKDLHKNLFTIWHEIFQLPKPKRKRFGLSNTVGGTQRRAEDIGFFTSDENLGVDPTQNVS 373
Query: 618 GGKLRMDERIDLSMSDPDLVPLL--IQENYINYRPSSAGRDEVKRLSLIARAAESISDGD 675
R + L+ S L+ + ENY+N + G LS + E + D
Sbjct: 374 SLTTRFHNILRLASSSGQYEKLMQGLFENYLNIKFKDTG------LSAVVSGTEWLEFSD 427
Query: 676 IFNVQIRRNQQWQLSQSSSLAS 697
+ +I ++Q + L SS S
Sbjct: 428 VVERKILQSQSFMLRGYSSFLS 449
>gi|224106896|ref|XP_002314321.1| predicted protein [Populus trichocarpa]
gi|222850729|gb|EEE88276.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 73/112 (65%), Gaps = 16/112 (14%)
Query: 43 HESMGRRKTSKYFATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKADD--DD 100
E GRRKTSKYFA +K+KP++ + EELPA+ K + + HK DD +D
Sbjct: 12 QEGSGRRKTSKYFAANKEKPKEDKKVEELPAREKLK-----------MMMIHKVDDYEED 60
Query: 101 DDFVPPSVKKNSVGATPSKKLKSGSGRAVAQKSVDIDDDEEEDVKKTESPLK 152
DDF P+ KKN ATPSKKLKSGSGR VA K VDI++ ++DVK ESPLK
Sbjct: 61 DDFALPN-KKND--ATPSKKLKSGSGRGVALKHVDINESVDDDVKDIESPLK 109
>gi|297745145|emb|CBI38984.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 90.1 bits (222), Expect = 4e-15, Method: Composition-based stats.
Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 39/224 (17%)
Query: 379 FLDTGTKRNGKKQNDASAEKAAILS-----GSPGMGKTTAAKLVCQMLGFQAIEVNASDS 433
F D G + ++QN + +L G PG+GKTT A + + G++ +E+NASD
Sbjct: 2 FQDGGVAKMRRRQNGCRVRYSCLLQILLLCGPPGLGKTTLAHVAAKHCGYRVVEINASDD 61
Query: 434 RGKA--DAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG 491
R + +AKI + NS+ M SK L++DE+DG +G
Sbjct: 62 RSSSTIEAKILDVV---QMNSV------------MADSK--PNCLVIDEIDGALGDGKGA 104
Query: 492 IADLIASIKISK---------IPIICICNDRYSQKLKSLVNYCSDLR------FRKPRKQ 536
+ ++ + + +ICICND Y+ L+ + +D F +P
Sbjct: 105 VEVILKMVSTERKADNKKGNVAKVICICNDLYAPALRPMRQVANDCYHYKVHIFVQPTVS 164
Query: 537 EIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ RL I N EGL+ N AL LA+ DIR +N LQ+++
Sbjct: 165 RVVSRLKYICNMEGLKTNSTALAVLAEYTECDIRSCLNTLQFLN 208
>gi|167044405|gb|ABZ09082.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine crenarchaeote HF4000_APKG6D3]
Length = 386
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 108/235 (45%), Gaps = 37/235 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W+EKYRPK +++GN++ K W +W + GT+ +L
Sbjct: 1 MMWSEKYRPKNFLDLIGNEESRKLFVEWFTNWKK-----GTR-------------PILLV 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A L + G+ I +NASD R N +I E++S +
Sbjct: 43 GPPGIGKTTLANLAAKQFGYDLISLNASDVR--------------NKQNIHEILS--PVL 86
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
N P ++ +DEVDG+ D GG +I +K +PI+ N S K+KS+
Sbjct: 87 GNQTVLGTP--MIFIDEVDGVHGRADYGGTEAIIKILKEPTVPIVLAANTDSSDKMKSIK 144
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ + + + L +I EG++++ +L +L + GDIR IN Q
Sbjct: 145 KVVKTIEMKPLSPKLLRLCLNRILQLEGVKIDSDSLAKLVTKSRGDIRSMINFTQ 199
>gi|448408398|ref|ZP_21574193.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
gi|445674253|gb|ELZ26797.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
Length = 327
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 160/351 (45%), Gaps = 70/351 (19%)
Query: 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSG 404
W EKYRP+T +EIVG + +V++L +++ +ND S + SG
Sbjct: 17 VWIEKYRPQTLDEIVGQEDIVERLQSYV-----------------DRNDLSH---FMFSG 56
Query: 405 SPGMGKTTAAKLVCQML-------GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
G+GKTT+A + + L F +E+NASD RG + +++ +
Sbjct: 57 PAGIGKTTSATAIARELYGDDWRDNF--LELNASDERG--------------IDVVRDRI 100
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQK 517
N A ++ + ++ +DE D +++ +G + + + + I CN SQ
Sbjct: 101 KNFARTSF---GGYEYRIIFLDEADALTSDAQGALRRTMEQFS-NNVRFILSCN-YSSQI 155
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ + + C+ RF + +A+ + IA EG+E + L+ L +GD+R AIN LQ
Sbjct: 156 IDPIQSRCAVFRFAPLSDEAVAEEMRHIAGEEGIEFTDDGLDALVYAADGDMRKAINALQ 215
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDI---------SPFTA----VDKLF---GFNGGKL 621
S++ V+ + + L S+AK E+I FTA +D+L G GG +
Sbjct: 216 AASVTGDVVDEEAVYA-LTSTAKPEEIKEMVDQALAGDFTAARSTLDRLLTEEGIAGGDV 274
Query: 622 RMDER----IDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAA 668
+D+ + + D V LL + YR ++ + ++ +L+A A
Sbjct: 275 -IDQLHRSVWEFDLDDEAAVRLLDRIGETEYRITTGANERIQLEALLASVA 324
>gi|126466118|ref|YP_001041227.1| replication factor C small subunit [Staphylothermus marinus F1]
gi|158513390|sp|A3DNV9.1|RFCS_STAMF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126014941|gb|ABN70319.1| replication factor C small subunit [Staphylothermus marinus F1]
Length = 329
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 45/242 (18%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
+ L W EKYRPKT +EIV +++V +L ++ N L +
Sbjct: 9 AELLWAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHL--------------------L 48
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQ-----AIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
+G PG GKTTAA + L + +E+NASD RG D SK +KE
Sbjct: 49 FAGPPGTGKTTAAHCLAHDLFGENYRQYMLELNASDERG-IDVIRSK---------VKEF 98
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY-S 515
++AN+ P ++++DE D M+A + + L+ + + I I N Y S
Sbjct: 99 ARTR-VAANI-----PFKIVLLDEADNMTADAQQALRRLM-EMYTATTRFILIAN--YPS 149
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ ++ + + C+ RF +K+++ RL IA E +E++E ALE + D GD+R AIN
Sbjct: 150 KIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKVEIDEEALEAIHDLSEGDMRRAINI 209
Query: 576 LQ 577
LQ
Sbjct: 210 LQ 211
>gi|254564511|ref|XP_002489366.1| replication factor C subunit [Komagataella pastoris GS115]
gi|238029162|emb|CAY67082.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328349795|emb|CCA36195.1| replication factor C subunit 2/4 [Komagataella pastoris CBS 7435]
Length = 324
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 129/287 (44%), Gaps = 56/287 (19%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPK +IVGN+ +++L + N + I+S
Sbjct: 9 LPWVEKYRPKLLKDIVGNEDTIERLKAFAIDGNVPHM--------------------IIS 48
Query: 404 GSPGMGKTT-----AAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT A +L+ M +E+NASD RG + N IK+ +
Sbjct: 49 GLPGIGKTTSVHCLAHELLGDMYYDAVLELNASDDRGIEVVR----------NKIKQF-A 97
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
++ +S R K ++I+DE D M+ G + + + I + CN ++ +
Sbjct: 98 HKKVSLPPGRHK----IVILDEADSMTPGAQQALRRTM-EIYSGTTRFVFACN-MSNKII 151
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ L + CS LR+ K +++ RL+ I EG++ + LE L GD+R AIN LQ
Sbjct: 152 EPLQSRCSILRYSKLYDEQVLSRLLYICKEEGVKYTDDGLEALIFTAEGDMRQAINNLQS 211
Query: 579 MSLSLSVIKYDD------------IRQRLLSSAKDEDISPFTAVDKL 613
+ ++ D+ +RQ L + KD DI AVD L
Sbjct: 212 TVAGMGLVNGDNVFRIVDSPHPLVVRQMLFKAVKDSDID--AAVDLL 256
>gi|194759542|ref|XP_001962006.1| GF14649 [Drosophila ananassae]
gi|190615703|gb|EDV31227.1| GF14649 [Drosophila ananassae]
Length = 992
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 133/335 (39%), Gaps = 84/335 (25%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF-------------------------- 379
W +KY+P+ +++ ++ + L WL W++
Sbjct: 320 WVDKYKPRKYIDLLSDEMTNRSLLYWLKMWDKVVFGKAFHSKQSQDSTNTEGGGGGGAAS 379
Query: 380 ---LDTGTKRNGKKQNDAS--------------------AEKAAILSGSPGMGKTTAAKL 416
L++ KR GK +++ +K A+L G PG+GKTT A
Sbjct: 380 NNQLNSFNKRTGKFESNGGWRQRKSRQALNTNVDTLGRPMQKVALLCGPPGLGKTTLAHT 439
Query: 417 VCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476
+ + G+ E+NASD R K++ L + +S+ ++ K P +
Sbjct: 440 IARHAGYNVREINASDDRSPEAFKLA-------------LENGTQMSSVLNEDKRPNCI- 485
Query: 477 IMDEVDGMSAGDRGGIADLI-----------------ASIKISKIPIICICNDRYSQKLK 519
++DE+DG R I L+ A I + PIICICND Y L+
Sbjct: 486 VLDEIDG---APRQSIEYLVKFVNDGIYSKVKAKGAKAEHNILRRPIICICNDVYDPALR 542
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L + F +A+RL++IA E L+ + +L LA++ D+R I+ +Q+
Sbjct: 543 PLRQVAFVVSFPPIDSARLAERLIKIAQREQLKTDFGSLIALAEKSGNDVRSCISSMQFF 602
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ + D+ L KD F D +F
Sbjct: 603 NAQKHSLTLQDVLNNNLGQ-KDRHQGLFEVWDAIF 636
>gi|150866055|ref|XP_001385524.2| hypothetical protein PICST_48947 [Scheffersomyces stipitis CBS
6054]
gi|149387311|gb|ABN67495.2| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 725
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 151/344 (43%), Gaps = 81/344 (23%)
Query: 346 WTEKYRPKTPNEIV--GNQQLVKQLHTWLAHWNEK-FLDTGTKRNGKKQNDASAEKAAIL 402
WT+KYRP++ ++ GN + + + WL W+ + + T+ +G K ++
Sbjct: 72 WTDKYRPRSFVQLCSAGNDRQYRLILHWLKKWSSVVYREDSTRNDGVDSLGRPHRKILLV 131
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNAS---DSRGKADAKISKGIGGSNANSIKELVSN 459
G G+GKTTA L+ + LG+ E+NAS D+ +AD+ S+G G N N+ +L
Sbjct: 132 HGPTGIGKTTAVHLLAKQLGYAVQELNASNSMDTLPQADS--SEGRWG-NVNAALKLKIK 188
Query: 460 EALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIA----DLIASIK--------------- 500
AL++N S + L++DE+D SA + G I DL+AS +
Sbjct: 189 NALTSNAITSNGKPSCLVIDEID--SAINSGDIVKVLNDLVASDQRSSRSKERDDSEKKK 246
Query: 501 -------ISKIPIICICNDRYS-----------QKLKSLVNYCSDLRFRKPRKQEIAKR- 541
+ PIICI ND Y+ +KL+ L C + F+KP + +R
Sbjct: 247 KNKAKNFVLNRPIICIANDIYNTSSTRMGGSPMEKLRPL---CEMVAFKKPVIAKTGRRG 303
Query: 542 ----------LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
L I E + + E+ + +GDIR +N +Q ++
Sbjct: 304 GNSLHSVKDHLQMITEKENWGYSSQDITEIVEVCDGDIRACLNHMQ----------FNGA 353
Query: 592 RQRLLSS--------AKDEDISPFTAVDKLFGFNGGKLRMDERI 627
++R S+ D+ +S FT VD LF KLR +E
Sbjct: 354 KERGFSNNFSMSSDLLLDKQVSWFTMVDLLFK-RDAKLRKEENF 396
>gi|302698263|ref|XP_003038810.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
gi|300112507|gb|EFJ03908.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
Length = 340
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 117/254 (46%), Gaps = 42/254 (16%)
Query: 329 ASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNG 388
+S AK G L W EKYRP+ +++VGN + +L R+G
Sbjct: 4 SSKAKATGPADAPYELPWVEKYRPQVLDDVVGNADTIDRLKV-------------IARDG 50
Query: 389 KKQNDASAEKAAILSGSPGMGKTTAAK-LVCQMLGFQ----AIEVNASDSRGKADAKISK 443
+ I+SG PG+GKTT+ L Q+LG +E+NASD RG +
Sbjct: 51 NCPH-------IIISGMPGIGKTTSIHCLAHQLLGPAYKEGVLELNASDERGIDVVR--- 100
Query: 444 GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISK 503
N IK + + +H ++I+DE D M+AG + + + S
Sbjct: 101 -------NKIKNFAQKKV---TLPPGRH--KIIILDEADSMTAGAQQALRRTMEIF--SN 146
Query: 504 IPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELAD 563
C+ + ++ ++ + + C+ LR+ K + QEI KRL++I AE +E N+ L L
Sbjct: 147 TTRFCLACNMSNKIIEPIQSRCAILRYGKLKDQEILKRLLEICEAEKVEYNDDGLTALIF 206
Query: 564 RVNGDIRMAINQLQ 577
GD+R AIN LQ
Sbjct: 207 TAEGDMRQAINNLQ 220
>gi|296090489|emb|CBI40820.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 89.4 bits (220), Expect = 7e-15, Method: Composition-based stats.
Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 30/188 (15%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA--DAKISKGIGGSNANSIKELVS 458
+L G PG+GKTT A + + G+ +E+N SD R + +AKI + NS+
Sbjct: 32 LLCGPPGLGKTTLAHVAAKHCGYHVVEINVSDDRSSSTIEAKILDVV---QMNSV----- 83
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI--------KISKI--PIIC 508
M+ SK L++DE+DG + GD G ++I I K + + P+IC
Sbjct: 84 -------MEDSK--PNCLVIDEIDG-ALGDGKGAVEVILKIVSTERKGHKTASLSRPVIC 133
Query: 509 ICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGD 568
ICND Y+ L+ L F +P + RL I N EGL+ N AL LA+ D
Sbjct: 134 ICNDLYALALRPLRQVAKVHIFVQPTVSRVVSRLKYICNMEGLKTNSTALAALAEYTECD 193
Query: 569 IRMAINQL 576
IR +N L
Sbjct: 194 IRSCLNTL 201
>gi|410917802|ref|XP_003972375.1| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Takifugu rubripes]
Length = 921
Score = 89.4 bits (220), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 118/308 (38%), Gaps = 95/308 (30%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN------------EKFLDTGTKRNG 388
Q S W +++ P+ E++ + + L WL W+ +F +N
Sbjct: 244 QMSRLWVDRFSPRHYTELLSDDFTNRCLLKWLKLWDGVVFGRERKSHPARFDRQAAGQNT 303
Query: 389 KKQNDASAE---------------------------KAAILSGSPGMGKTTAAKLVCQML 421
K N + K A+LSG PG+GKTT A ++ +
Sbjct: 304 SKPNHTNQNPNRFKTKVEMTEEILEAELDQYKRPKFKVALLSGPPGLGKTTLAHIIAKQA 363
Query: 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL----- 476
G+ +E+NASD R S E +D + K+VL
Sbjct: 364 GYNVVEINASDDR-----------------------SAEVFQKRIDTATQMKSVLGVNEK 400
Query: 477 ----IMDEVDGMSAGDRGGIADLIASIK---------------------ISKIPIICICN 511
I+DE+DG I L+A++ I PIICICN
Sbjct: 401 PNCLIIDEIDGAPTA---AINILLAALNRKDGHSGEATETMKKKKKKESILLRPIICICN 457
Query: 512 DRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571
D Y L+ L L F + + +++RL +I+ G++ + AL L ++ + DIR
Sbjct: 458 DLYVPALRPLRQQAFLLTFPQTQPSRLSQRLTEISLLHGMKADTGALMSLCEKTDNDIRA 517
Query: 572 AINQLQYM 579
IN LQ++
Sbjct: 518 CINTLQFL 525
>gi|167042397|gb|ABZ07124.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine crenarchaeote HF4000_ANIW97P9]
Length = 386
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 37/235 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W+EKYRPK +++GN++ K W +W + GT+ +L
Sbjct: 1 MMWSEKYRPKNFLDLIGNEESRKLFVEWFTNWKK-----GTR-------------PILLV 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A L + G+ I +NASD R N +I E++S +
Sbjct: 43 GPPGIGKTTLANLAAKQFGYDLISLNASDVR--------------NKKNIHEILS--PVL 86
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
N P ++ +DEVDG+ D GG +I +K +PI+ N S K+KS+
Sbjct: 87 GNQTVLGTP--MIFIDEVDGIHGRADYGGTEAIIKILKEPTVPIVLAANTDSSDKMKSIK 144
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ + + + L +I EG++++ ++ +L + GDIR IN Q
Sbjct: 145 KVVKTIELKPLSPKLLRLCLNRILQLEGVKIDSDSIAKLVTKSRGDIRSMINFTQ 199
>gi|15988297|pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988298|pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988299|pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988300|pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988301|pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988302|pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 115/238 (48%), Gaps = 45/238 (18%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP+ ++IVG + +VK+L + ++ TG+ + + +G
Sbjct: 15 WVEKYRPQRLDDIVGQEHIVKRL--------KHYVKTGSMPH------------LLFAGP 54
Query: 406 PGMGKTTAA-KLVCQMLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
PG+GKTTAA L ++ G +E+NASD RG N I+E V
Sbjct: 55 PGVGKTTAALALARELFGENWRHNFLELNASDERG--------------INVIREKVKEF 100
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL-K 519
A + + + ++ +DE D ++ + + + S + I CN YS K+ +
Sbjct: 101 ARTKPIGGASF--KIIFLDEADALTQDAQQALRRTMEMFS-SNVRFILSCN--YSSKIIE 155
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ + C+ RFR R ++IAKRL IA EGLE+ E L+ + GD+R AIN LQ
Sbjct: 156 PIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQ 213
>gi|156740882|ref|YP_001431011.1| DNA ligase [Roseiflexus castenholzii DSM 13941]
gi|190359279|sp|A7NHP6.1|DNLJ_ROSCS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|156232210|gb|ABU56993.1| DNA ligase, NAD-dependent [Roseiflexus castenholzii DSM 13941]
Length = 718
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Query: 192 KGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDED 251
KG P+G D L G TFVI+GTL S+ REEA LI HGGRV+GSVSKKT+YL+ +
Sbjct: 598 KGPAVAPKG--DALAGKTFVITGTLPSMSREEAGALIVAHGGRVSGSVSKKTDYLVVGSE 655
Query: 252 IAGAKSTKAKELGTPFLTEDGLFDMIRAS 280
G K KA+ELG P L E GL +I A+
Sbjct: 656 PGGTKVAKAQELGIPTLDEAGLLALIGAN 684
>gi|53136688|emb|CAG32673.1| hypothetical protein RCJMB04_32h3 [Gallus gallus]
Length = 582
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 32/200 (16%)
Query: 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
K A+L G PG+GKTT A ++ + G+ +E+NASD R +I A +K ++
Sbjct: 352 KVALLCGPPGLGKTTLAHVIARHAGYNVVEMNASDDRSPETFRIRI----EAATQMKSVL 407
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIAS------------------I 499
E LI+DE+DG + ++I S
Sbjct: 408 GAE----------EKPNCLIIDEIDGAPTASITVLLNIINSKEPEGEAAASGGRRRRREG 457
Query: 500 KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALE 559
+ P+ICICND+Y L+ L L F + +A+RL +IA +G+ + AL
Sbjct: 458 SLLLRPVICICNDQYVPALRPLRQQAFLLSFPQTAPSRLAQRLGEIAQQQGMRADMGALL 517
Query: 560 ELADRVNGDIRMAINQLQYM 579
L + DIR IN LQ++
Sbjct: 518 ALCKKAENDIRSCINTLQFL 537
>gi|374724606|gb|EHR76686.1| replication factor C large subunit [uncultured marine group II
euryarchaeote]
Length = 511
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 137/314 (43%), Gaps = 79/314 (25%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE++RP + + GN+ +++ WL W QN +KA +L+G
Sbjct: 7 WTERHRPTSERHLEGNEVQRRKIRAWLDDW---------------QNGTPKKKAILLAGP 51
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+ A+ + Q LG+ IE+NASD+R A + + G ++ + L + +
Sbjct: 52 PGVGKTSVARAIAQDLGWNVIELNASDARNAAAIRKAATQGSTH----RSLFHDPS---- 103
Query: 466 MDRSKHPKTVLIMDEVDGMSA---------------------------GDRGGIADLIAS 498
+K +T++++DEVD +S GD GG A+L+
Sbjct: 104 ---AKKQRTLILLDEVDHISGGLRAVSQDRIDKAMQGADESGREVKLHGDSGGKAELLHL 160
Query: 499 IKISKIPIICICN----------------DRYSQKLKSLV-NYCSDLRFRKPRKQEIAKR 541
+ +K P+I CN DR+ L+ + S+ R+ IAKR
Sbjct: 161 LANTKQPVILACNEIMGLWGKGSTWRNTRDRFKPHLEIITFERASNEALRR-----IAKR 215
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM-SLSLSVIKYDDIRQRLLSSAK 600
+++ E L+ ++ A+ L GD+R + LQ + S + I + + S +
Sbjct: 216 VLR---EENLDFDDAAVSALVTSNPGDLRALVRDLQVLASTAQGSITKAMVVAQAESGRR 272
Query: 601 DEDISPFTAVDKLF 614
D + F +D L+
Sbjct: 273 DTTLEVFPGLDALY 286
>gi|340720927|ref|XP_003398880.1| PREDICTED: hypothetical protein LOC100650969 [Bombus terrestris]
Length = 1189
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 121/260 (46%), Gaps = 25/260 (9%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE-- 397
Q +WT KYRPK EIVGN++ V +L WL W F + + + S +
Sbjct: 706 QFEYCSWTYKYRPKCSQEIVGNEEAVAKLREWLLGWKPMFTNKDVSSGDEFYSSDSCQTR 765
Query: 398 -----KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR-GK------ADAKISKGI 445
+ A+L G G GKT + + G+ +E+NAS R GK +A S I
Sbjct: 766 ISENNQVAVLLGPHGCGKTASVYALADEFGYTVLELNASSKRTGKKLLKELEEATKSHRI 825
Query: 446 GGSNANSI-KELVSNEALSANMDRSKHPKTVLI-MDEVDGMSAGDRGGIADLIASIKISK 503
+ S+ +LVS+E + R K P+ LI +++VD + D G I+ SK
Sbjct: 826 KKNEKTSVFCDLVSDEIM-----RKKIPQNSLILLEDVDIIFEEDEGFISAAYQLASNSK 880
Query: 504 IPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAE-GLEVNEIALEELA 562
PI+ C D S L + + + F++P + L I+ AE G + + EL
Sbjct: 881 RPIVMTCRDVCSH-LNKMAPQQNRIYFQEPVGNRVCVLLELISLAETGYRLPSNCITELL 939
Query: 563 DRVNGDIRMAINQLQYMSLS 582
+GD+R AI QLQY+ LS
Sbjct: 940 Q--SGDLRKAILQLQYLLLS 957
>gi|123412361|ref|XP_001304045.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121885470|gb|EAX91115.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 603
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 133/292 (45%), Gaps = 37/292 (12%)
Query: 337 QNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHW------------NEKFLDTGT 384
+ I S +Y PKT +++ +++ +Q+ W+ H+ +K +D T
Sbjct: 66 EEINVSETNLINEYTPKTYTDLISDERTNRQVLEWMRHFQNAKSERKKPKRTKKLVDL-T 124
Query: 385 KRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG 444
K + +Q +L+G PG GKTT +++ + GF +E+NASD DA + +
Sbjct: 125 KNSKFEQPTIQLSHILLLAGPPGSGKTTLIRIIAKHCGFHTVELNASD-----DASVDRN 179
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIAD--LIASIKIS 502
+++ L+ K +++ +E+DG+ G I+D L A +
Sbjct: 180 ----------QMILQNQLNFEPVFGAKTKPLMVFEELDGI-----GTISDSVLKAITGNA 224
Query: 503 KIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELA 562
P++ I ND Y+Q LK++ + + ++ P + +R+ I E ++++ A+ E+A
Sbjct: 225 SRPVVIIVNDGYAQSLKNIRSIATFIKLPPPNSTQFKERIRYICKNEEIDISTQAINEVA 284
Query: 563 DRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ DIR A+N + ++ + D L K+ ++PF LF
Sbjct: 285 EISKYDIRTALNTISFLRARQPI--SADTVHLLPVGLKNSSLTPFDVWTTLF 334
>gi|432847418|ref|XP_004066014.1| PREDICTED: LOW QUALITY PROTEIN: chromosome transmission fidelity
protein 18 homolog [Oryzias latipes]
Length = 922
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 99/202 (49%), Gaps = 39/202 (19%)
Query: 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
K A+LSG PG+GKTT A ++ + G+ +E+NASD R S + ++ ++
Sbjct: 344 KVALLSGPPGLGKTTLAHVIAKHAGYNVVEINASDDR-------SAEVFQKRIDTATQMK 396
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI------------------ 499
S L AN + P LI+DE+DG A I L+A +
Sbjct: 397 S--VLGAN----ERP-NCLIIDEIDGAPAA---AINILLALLSRKDGHGAETATDAMKKK 446
Query: 500 ----KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNE 555
+I PIICICND Y+ L+ L L F + + +A+RL +I++ +GL+ +
Sbjct: 447 KKREQILLRPIICICNDLYTPALRPLRQQAFLLTFPQTQPSRLAQRLSEISSRQGLKADT 506
Query: 556 IALEELADRVNGDIRMAINQLQ 577
AL L ++ + DIR IN LQ
Sbjct: 507 GALLCLCEKTDNDIRSCINTLQ 528
>gi|15920689|ref|NP_376358.1| replication factor C large subunit [Sulfolobus tokodaii str. 7]
Length = 413
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 108/218 (49%), Gaps = 19/218 (8%)
Query: 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
KA +L G PG+GKTT A+ + + + E+NASDSR N N I+ +
Sbjct: 15 KAVLLYGPPGVGKTTLAEALARDYKLELFEMNASDSR--------------NLNDIRTMA 60
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQ 516
+++ + K ++++DEVDG++A D G I ++ I +K PII ND +
Sbjct: 61 ERASITGTIFGIKG--KLILLDEVDGLNARADAGAIDAILELINKTKYPIILTANDPWDP 118
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
L+ L N + ++ K + + L +I AE + + AL+ + ++ GD R AIN L
Sbjct: 119 SLRPLRNAVKMIELKRLTKYPLKRILKKICEAEKITCEDEALDFIIEQSEGDARYAINML 178
Query: 577 QYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
Q ++ + D + L KD ++ PF A+ +F
Sbjct: 179 QGVAEGYGRVTLDMAKN--LVRRKDRELDPFEALRGVF 214
>gi|405945363|gb|EKC17293.1| Replication factor C subunit 1 [Crassostrea gigas]
Length = 520
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 70/109 (64%), Gaps = 4/109 (3%)
Query: 153 SSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVI 212
SS + + + P++ + +G ++N R+ P G KE+PEG +CL LTFVI
Sbjct: 416 SSAKASPTKVSPDTPSMAK-KGSTYRSYLN---REGPRALGSKEIPEGGENCLESLTFVI 471
Query: 213 SGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAK 261
+G L+SLER EA+ LI+++GG+VTGS+SKKT+YL+ D +K TK +
Sbjct: 472 TGVLESLERNEAKSLIEKYGGKVTGSISKKTSYLVAGRDAGESKLTKVR 520
>gi|363739389|ref|XP_414833.3| PREDICTED: LOW QUALITY PROTEIN: chromosome transmission fidelity
protein 18 homolog [Gallus gallus]
Length = 951
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 32/200 (16%)
Query: 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
K A+L G PG+GKTT A ++ + G+ +E+NASD R +I A +K ++
Sbjct: 352 KVALLCGPPGLGKTTLAHVIARHAGYNVVEMNASDDRSPETFRIRI----EAATQMKSVL 407
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIAS------------------I 499
E LI+DE+DG + ++I S
Sbjct: 408 GAE----------EKPNCLIIDEIDGAPTASITVLLNIINSKEPEGEVAASGGRRRRREG 457
Query: 500 KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALE 559
+ P+ICICND+Y L+ L L F + +A+RL +IA +G+ + AL
Sbjct: 458 SLLLRPVICICNDQYVPALRPLRQQAFLLSFPQTAPSRLAQRLGEIAQQQGMRADMGALL 517
Query: 560 ELADRVNGDIRMAINQLQYM 579
L + DIR IN LQ++
Sbjct: 518 ALCKKAENDIRSCINTLQFL 537
>gi|256811337|ref|YP_003128706.1| replication factor C small subunit [Methanocaldococcus fervens
AG86]
gi|256794537|gb|ACV25206.1| Replication factor C [Methanocaldococcus fervens AG86]
Length = 316
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 44/264 (16%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRPKT +EIVG ++VK+L KK + + + SG
Sbjct: 5 WVEKYRPKTLDEIVGQDEIVKRL--------------------KKYVEKKSMPHLLFSGP 44
Query: 406 PGMGKTTAAKLVCQMLGFQ-----AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
PG+GKTTAA + + L + +E+NASD RG + I+ V +
Sbjct: 45 PGVGKTTAALCLARDLFGENWRENFLELNASDERG--------------IDVIRTKVKDF 90
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
A + + P ++ +DE D ++ + + + K S + + + S+ +
Sbjct: 91 ARTKPI--GDVPFKIIFLDESDALTPDAQNALRRTME--KYSDVCRFILSCNYPSKIIPP 146
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ + C+ RF +K++IAK+L +IA EGL++ E LE + GD+R AIN LQ +
Sbjct: 147 IQSRCAIFRFSPLKKEDIAKKLKEIAEKEGLKLTESGLEAIIYVSEGDMRKAINVLQ-TA 205
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDI 604
+LS + D+I ++ S A+ E++
Sbjct: 206 AALSEVIDDEIVYKVSSRARPEEV 229
>gi|347838459|emb|CCD53031.1| similar to chromosome transmission fidelity protein 18 [Botryotinia
fuckeliana]
Length = 1003
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 146/332 (43%), Gaps = 50/332 (15%)
Query: 276 MIRASKPMKALAQAESKKSVEKVAAS-LPKKSPQNIEAKSTSAPKAPIERMKTVASPAKR 334
M+ A KA ++KKS + S L +++ + +AK + + E M ++ S A +
Sbjct: 181 MVAARSVTKA---GKAKKSYYGINISELVEEASKETKAKESRKVETENEIMPSIESLAVK 237
Query: 335 KGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE-KFLDTG------TKRN 387
K + +L WTEKYR + E+ G+ + +Q+ WL W+ F +G TK+
Sbjct: 238 K----PRKTLMWTEKYRARHFMELCGDDRTHRQVLRWLKAWDPIVFPKSGKPKAAPTKKF 293
Query: 388 GKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK--ADAKISKGI 445
G+ ++ K +L+G PG+GKTT A + + G++ +E+NASD R + +I +
Sbjct: 294 GEPDDEKPHRKILLLTGPPGLGKTTLAHVCARQAGYEVMEINASDERSRDVVKGRIRTSV 353
Query: 446 GGSNANSIKELVSNEALSANMDRSKHPKT---------------------------VLIM 478
G N + + S S ++ ++ HP ++++
Sbjct: 354 GTENVKTGSTVTSK---SGHVSKNAHPLCVVVDEVDGVVGGSGGSGEGGFIKALIDLVLL 410
Query: 479 DEVDGMSAGDRGGIADLIASIKISKI-PIICICNDRYSQKLKSLVN--YCSDLRFRKPRK 535
D+ + + G + + P+I +CND Y L+ L N + + RKP
Sbjct: 411 DQKNSSAVGTNTNYSKKKKGDDFRLLRPLILVCNDVYHPSLRPLRNSSFAEIIHIRKPPL 470
Query: 536 QEIAKRLMQIANAEGLEVNEIALEELADRVNG 567
+ +R+ + EG+ + A+ L + G
Sbjct: 471 DAVVQRMQTVFEKEGVSCDSDAIRRLCEATWG 502
>gi|340344135|ref|ZP_08667267.1| AAA ATPase central domain protein [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519276|gb|EGP92999.1| AAA ATPase central domain protein [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 385
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 150/348 (43%), Gaps = 63/348 (18%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W+EKYRP+ ++++GN++ + W W + GTK +L G
Sbjct: 2 WSEKYRPQNISDMIGNEESRSSIIEWFTKWKK-----GTK-------------PLLLVGP 43
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKTT A L + + + +NASD R K+ I E++S + N
Sbjct: 44 PGIGKTTIAYLTAKQFQYDMVGLNASDVRSKS--------------RINEILS--PVLGN 87
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ P ++ +DEVDG+ GD GG LI +K IPII N S K+KS+
Sbjct: 88 VSILGLP--MIFIDEVDGIHGRGDYGGAEALIEILKEPTIPIILAANSDTSDKMKSIKKV 145
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
+ F+ + + L I E + ++ ++ ++ DR GD+R IN Q +
Sbjct: 146 VKTISFKPIPPRLLKIYLENILKKENVTLSPGSIIKVIDRSRGDVRSMINLTQSL----- 200
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDER--IDLSMS-DPDLVPLLI 641
V ++ ++ S ED ++ F N DE + SM DP L
Sbjct: 201 VTGFNPQTEKSFESINVED-----GINAFFKANS----FDEARGVLYSMQIDPRL----- 246
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
I+ SS + +L A+ E IS+ DI +I + Q W+L
Sbjct: 247 ---KIDAFYSSIVTSNLDNQTL-AKLLEIISEADILYGKIMKTQNWRL 290
>gi|195434969|ref|XP_002065474.1| GK15463 [Drosophila willistoni]
gi|194161559|gb|EDW76460.1| GK15463 [Drosophila willistoni]
Length = 980
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 126/312 (40%), Gaps = 80/312 (25%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF-------------------------- 379
W +KY+P+ +++ ++ + L WL W++
Sbjct: 301 WVDKYKPRKYIDLLSDEMTNRSLLYWLKMWDKVVFGKVFHSKQEQEQQMAGGAGSGSGSG 360
Query: 380 ------LDTGTKRNGKKQNDAS--------------------AEKAAILSGSPGMGKTTA 413
L++ KR GK +++ +K A+L G PG+GKTT
Sbjct: 361 SGAAAQLNSFNKRTGKFESNGGWRQRKARQALNTNVDDLGRPMQKVALLCGPPGLGKTTL 420
Query: 414 AKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK 473
A + + G+ E+NASD R K++ L + +S+ ++ K P
Sbjct: 421 AHTIARHAGYNVREINASDDRSPEAFKLA-------------LENGTQMSSVLNEDKRPN 467
Query: 474 TVLIMDEVDGMSAGDRGGIADLIASIKISKI--------------PIICICNDRYSQKLK 519
+ ++DE+DG + ++ SK+ PI+CICND Y L+
Sbjct: 468 CI-VLDEIDGAPRQSIEYLVKFVSDGIYSKVKAKGSKPEHNVLRRPIVCICNDVYDPALR 526
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L ++F +A+RL+Q+A E ++ + +L LA++ D+R I+ +Q+
Sbjct: 527 PLRQIAFVVQFPPIDSARLAERLIQVAKKEKMKTDFGSLIALAEKSGNDVRSCISSMQFF 586
Query: 580 SLSLSVIKYDDI 591
+ + D+
Sbjct: 587 NAQKHSLTLQDV 598
>gi|409051889|gb|EKM61365.1| hypothetical protein PHACADRAFT_111883 [Phanerochaete carnosa
HHB-10118-sp]
Length = 342
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 121/256 (47%), Gaps = 48/256 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPKT +++VGN + +++L R+G + ILS
Sbjct: 21 LPWVEKYRPKTLDDVVGNSETIERLKV-------------VARDGNCPH-------IILS 60
Query: 404 GSPGMGKTTAAK-LVCQMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ L Q+LG +E+NASD RG + N +K
Sbjct: 61 GLPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVR----------NKVKAFAQ 110
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGI---ADLIASIKISKIPIICICNDRYS 515
+ + +H ++I+DE D M+ G + + ++ A+ ++ + C +++
Sbjct: 111 KKV---TLPPGRH--KIVILDEADSMTPGAQQALRRTMEIFANT--TRFALACNMSNKII 163
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ ++S C+ LR+ K R E+ +RL++I EG++ N+ L L GD+R AIN
Sbjct: 164 EPIQS---RCAILRYAKLRDAEVLRRLLEICEMEGVKYNDDGLTALIFTAEGDMRQAINN 220
Query: 576 LQYMSLSLSVIKYDDI 591
LQ + D++
Sbjct: 221 LQSTFSGFGFVSADNV 236
>gi|170589980|ref|XP_001899751.1| Activator 1 40 kDa subunit [Brugia malayi]
gi|158592877|gb|EDP31473.1| Activator 1 40 kDa subunit, putative [Brugia malayi]
Length = 326
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 41/258 (15%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
SS W EKYRPK +E+VGN+ ++++L + + G N I
Sbjct: 3 SSTPWVEKYRPKMLSEVVGNEFVIQRLAAF-------------AKQGNTPN-------II 42
Query: 402 LSGSPGMGKTTAA-KLVCQMLGFQ----AIEVNASDSRGKADAKISKGIGGSNA--NSIK 454
+SG PG GKTT+ L +MLG + +E+NASD R +I G + N IK
Sbjct: 43 ISGPPGCGKTTSMWALAREMLGDRLKNACLELNASDDR-----EIFFKFSGIDVVRNKIK 97
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI-KISKIPIICICNDR 513
++ + +H ++I+DEVD M+ G + + + K ++ + C ++
Sbjct: 98 TFAQSKV---TLPPGRHK--IIILDEVDSMTEGAQQALRRTMEIYSKTTRFTLAC---NQ 149
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
+ ++ + + C+ LRF K +++I KRL+QI AE + ++ ++ L GD+R A+
Sbjct: 150 SGKVIEPIQSRCAILRFSKLSEEQIVKRLLQICEAEKVTYDDSGIDALVFTAQGDMRQAL 209
Query: 574 NQLQYMSLSLSVIKYDDI 591
N LQ + + + D++
Sbjct: 210 NNLQCTVVGFNNVTADNV 227
>gi|387015160|gb|AFJ49699.1| Chromosome transmission fidelity protein 18-like protein [Crotalus
adamanteus]
Length = 998
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 122/286 (42%), Gaps = 55/286 (19%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL-------------------- 380
Q SL W +++ P+ E++ + + L WL W+
Sbjct: 303 QHSL-WVDQFTPRRYMELLSDDYTNRCLLKWLKLWDVLVFGKEKPYRKMPLPSGIHPPFK 361
Query: 381 ---DTGTKRNGKKQ------------NDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA 425
D GT+ K Q ++ K A+L G PG+GKTT A ++ + G+
Sbjct: 362 PSRDQGTRWKTKAQMTEEVLEAELDQHNRPKFKIALLCGPPGLGKTTLAHVIAKHAGYNV 421
Query: 426 IEVNASDSRG--------KADAKISKGIGGS---NANSIKELVSNEALSANMDRS-KHPK 473
+E+NASD R +A ++ +G + N I E+ S N+ S + K
Sbjct: 422 VEMNASDDRNPDVFQIQIEAATQMKSVLGANEKPNCLVIDEIDGAPVASINVLLSITNQK 481
Query: 474 TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKP 533
++ E + A RG L+ PIICICND+Y L+ L L F
Sbjct: 482 AGMVQSEDRPIGAKSRGRGRLLLR-------PIICICNDQYVPALRLLKQQAFILNFPST 534
Query: 534 RKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ + +RL +IA +G++ + AL L ++ + DIR IN LQ++
Sbjct: 535 LQSRLVQRLHEIAILQGMKADIGALTALCEKTDNDIRSCINTLQFL 580
>gi|322695402|gb|EFY87211.1| hypothetical protein MAC_06771 [Metarhizium acridum CQMa 102]
Length = 958
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 127/290 (43%), Gaps = 47/290 (16%)
Query: 320 APIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF 379
P ER +AS N + +L WTEKYR + ++ G+ +Q+ WL W+
Sbjct: 190 VPTERGAIIASLETPISGNKPKKTLLWTEKYRAQNFMDLCGDDSTNRQVLRWLKRWDPVV 249
Query: 380 LDTGTK-------RNGKK---QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429
T+ R G K + + K +L+G PG+GKTT A + + G++ +E+N
Sbjct: 250 FPGQTRAKPVIVRRPGAKHQLEEEKPHRKILMLTGPPGLGKTTLAHVCAKQAGYEVLEIN 309
Query: 430 ASDSRGK--ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG 487
ASD R + +I +G S+K + +N+A + +K +I+DEVDG+++G
Sbjct: 310 ASDDRSRDVVRNRIRTSLG---TESVKNVTNNKASDGSQKIAK--PVCVIVDEVDGVTSG 364
Query: 488 DRG--------GIADLI------ASIKISKI--------------PIICICNDRYSQKLK 519
+ DL+ +S+ S+ P++ ICND Y L+
Sbjct: 365 AGASGEGGFVKALIDLVLTDQRNSSLPTSEYSHKKKKGDDFRQMRPLVLICNDVYHPSLR 424
Query: 520 SL--VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567
L N + +P + R+ I EG+ ++ A +L + G
Sbjct: 425 PLRQSNLAEIVHVGRPSLDAVVGRVKNIFEKEGIPCDKDAARKLCEAAWG 474
>gi|241957984|ref|XP_002421711.1| chromosome transmission fidelity protein, putative [Candida
dubliniensis CD36]
gi|223645056|emb|CAX39650.1| chromosome transmission fidelity protein, putative [Candida
dubliniensis CD36]
Length = 851
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 140/331 (42%), Gaps = 66/331 (19%)
Query: 342 SSLTWTEKYRPKTPNEIV--GNQQLVKQLHTWLAHWNEKFL--DTGTKRNGKKQNDASAE 397
SS WTEKY+P ++ GN + + + WL W+ D K N +
Sbjct: 180 SSQIWTEKYKPNNFIQLCSAGNDRQYRSILQWLKKWSPVVFGDDIPHKENADPLG-RPYK 238
Query: 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS----NANSI 453
K ++ G G+GKTT + ++ + +G+ E+NA++S D GGS NA S
Sbjct: 239 KILLIHGPTGIGKTTISHILAKHMGYTVQELNAANS---MDTLPQASGGGSSAYTNAASA 295
Query: 454 KELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD----------------------RGG 491
+L AL++N S+ T LI+DE+D ++ + R
Sbjct: 296 LKLKIVNALTSNSIHSQGKPTCLIIDEIDSLANINDVVKVLNDLVQSDHRALNKKLKRSS 355
Query: 492 IADLIASIKISKI------PIICICNDRYSQK--------LKSLVNYCSDLRFRKPRK-- 535
+ D+ A K K PIICI ND YSQ ++ L ++FRKP
Sbjct: 356 MEDIEAKKKSKKKDIFLNRPIICIANDIYSQPSNRFGPNPMEKLRPISEIIQFRKPTSSR 415
Query: 536 ------------QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
+ + LM+I E + ++ + E+ + GDIR IN +Q+ S S+
Sbjct: 416 TTSGAKTGGNAIKSVKDYLMEINKQENMGLDHQEIGEIVEICEGDIRACINHMQFNSRSV 475
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
I+ + L+ D +S F D+LF
Sbjct: 476 DTIERRIAKTPLI----DRQLSWFAMTDQLF 502
>gi|386876490|ref|ZP_10118601.1| ATPase, AAA family [Candidatus Nitrosopumilus salaria BD31]
gi|386805697|gb|EIJ65205.1| ATPase, AAA family [Candidatus Nitrosopumilus salaria BD31]
Length = 389
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 109/235 (46%), Gaps = 37/235 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W+EKYRP+ +++VGN++ + W W + GTK +L
Sbjct: 4 LMWSEKYRPQIISDMVGNEESRAAIMEWFVKWKK-----GTK-------------PLLLV 45
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A LV + G+ I +NASD R K+ I E++ +
Sbjct: 46 GPPGIGKTTIAYLVAEQFGYDMIGLNASDVRSKS--------------RINEILM--PVL 89
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
AN+ P ++ +DEVDG+ D GG + LI +K +PII N S K+K +
Sbjct: 90 ANVSVMGIP--MIFVDEVDGIHGRSDFGGASALIDILKEPTVPIILAANSDTSDKMKGIK 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ F+K + + L I E +++ +L ++ + GDIR IN Q
Sbjct: 148 KAVKTIYFKKIPPRLLRIYLENILKKESAKLSPGSLIKVIGKSRGDIRSMINLTQ 202
>gi|11499642|ref|NP_070884.1| replication factor C small subunit [Archaeoglobus fulgidus DSM
4304]
gi|42559325|sp|O28219.1|RFCS_ARCFU RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=afRFC small subunit; Short=afRFCsm
gi|110590966|pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
gi|110590967|pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
gi|110590968|pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
gi|110590969|pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
gi|110590970|pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
gi|110590971|pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
gi|110590972|pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
gi|110590973|pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
gi|110590974|pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
gi|2648471|gb|AAB89191.1| activator 1, replication factor C, 35 KD subunit [Archaeoglobus
fulgidus DSM 4304]
Length = 319
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 134/305 (43%), Gaps = 45/305 (14%)
Query: 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSG 404
W EKYRP+T +E+VG +++++L ++ N L + SG
Sbjct: 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHL--------------------LFSG 45
Query: 405 SPGMGKT-TAAKLVCQMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVSN 459
PG GKT TA L + G IE+NASD RG + + IKE
Sbjct: 46 PPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR----------HKIKEFART 95
Query: 460 EALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLK 519
+ P ++ +DE D ++A + + + S I CN S+ ++
Sbjct: 96 APIGG------APFKIIFLDEADALTADAQAALRRTMEMYSKS-CRFILSCN-YVSRIIE 147
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ + C+ RF+ K+ + KRL++I EG+++ E LE L GD R AIN LQ
Sbjct: 148 PIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGA 207
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDE-RIDLSMSDPDLVP 638
+ V+ D I Q + ++A+ E+++ F + +D ++ MS D+V
Sbjct: 208 AAIGEVVDADTIYQ-ITATARPEEMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVA 266
Query: 639 LLIQE 643
L +E
Sbjct: 267 QLFRE 271
>gi|448086455|ref|XP_004196105.1| Piso0_005549 [Millerozyma farinosa CBS 7064]
gi|359377527|emb|CCE85910.1| Piso0_005549 [Millerozyma farinosa CBS 7064]
Length = 790
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 154/367 (41%), Gaps = 67/367 (18%)
Query: 319 KAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIV--GNQQLVKQLHTWLAHWN 376
K+ I KT K+ G+ + WTEKY P ++ GN + + + WL W
Sbjct: 108 KSAIRSEKTRKRETKKVGEKL------WTEKYCPNRFMDLCSAGNDKQYRLVLHWLRKW- 160
Query: 377 EKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436
D + + D +K ++ G PG+GKT AA ++ + G+ E+NA++S K
Sbjct: 161 ----DPLVFKKRPVEEDVDFKKILLICGPPGIGKTVAAHILAKQSGYSVQEINAANSMDK 216
Query: 437 ---ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG-MSAGDRGGI 492
+D S G +N ++ L AL+ N S + T L++DE+D +AGD +
Sbjct: 217 LPQSDTP-SGAQGFANVSAALRLKITNALTTNSLTSNNKPTCLVIDEIDSSANAGDIMKV 275
Query: 493 -ADLI-------------------ASIKISKI------PIICICNDRYSQK--------- 517
DL+ AS K K PIICI ND YS
Sbjct: 276 LYDLVQLDRKKARRTTKPKTFGSKASSKEQKKEFSLNRPIICIANDIYSTSGSRFNKSAS 335
Query: 518 LKSLVNYCSDLRFRKPR-------------KQEIAKRLMQIANAEGLEVNEIALEELADR 564
L+ L + FRKP + + + LM I +AE L ++ + E+ D
Sbjct: 336 LEKLRQISEIISFRKPHLAKSSVNSKPGNSVRSLKEHLMVINDAEKLGMDYQEIGEVIDV 395
Query: 565 VNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMD 624
GDIR IN +Q+ ++ D + S KD+ ++ + V+ LF +L D
Sbjct: 396 CEGDIRACINYMQFNGRKINTDLIDPPKSTNKSQNKDKHMTWISMVETLFK-RDPRLSKD 454
Query: 625 ERIDLSM 631
E + M
Sbjct: 455 ESFNYIM 461
>gi|395835681|ref|XP_003790803.1| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Otolemur garnettii]
Length = 971
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 46/211 (21%)
Query: 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
+K A+L G PG+GKTT A ++ + G+ +E+NASD R +I +
Sbjct: 366 QKVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEAFRI-------------HI 412
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSA----------------------------GD 488
+ + + + S P L++DE+DG G
Sbjct: 413 EAATQMESVLGASGRP-NCLVIDEIDGAPTAAINVLLSVLNCRGPQEAESRGPAVPLGGG 471
Query: 489 RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
R G AD ++ PIICICND+Y+ L+ L L F + +RL +I+
Sbjct: 472 RRGQADRALLMR----PIICICNDQYAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEISLR 527
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+G++ + AL L ++ + DIR IN LQ++
Sbjct: 528 QGMQADPGALAALCEKADNDIRACINTLQFL 558
>gi|429329515|gb|AFZ81274.1| chromosome replication factor, putative [Babesia equi]
Length = 845
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 116/239 (48%), Gaps = 23/239 (9%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W +KY PK ++++ ++ + + WL+ WN + T K+ + ++ +L G
Sbjct: 206 WCDKYAPKYFSDLLTSEFVNLECLKWLSSWNS----SSTYNEKYKEPE---KRILLLGGP 258
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSA 464
PG+GKTT +++ G+ +E+N+SD R K K+ I G +A+S+ N L
Sbjct: 259 PGVGKTTLIRVLAAHCGYNVVEINSSDDRSK--NKVLPIITGVISASSVTPGKQNLCLLE 316
Query: 465 NMDRSKHPKTVLIM---DEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
+++ H +T +I + + ++A I + PIIC CND Y++ LK L
Sbjct: 317 DVESLVHSETHIIAALKNFANKLTAKGNHAI----------RRPIICTCNDVYARHLKEL 366
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ + + +RL I EGL ++ L+E+ + DIR ++ L+++S
Sbjct: 367 RDVSKVIILEPCDSVVLQQRLEYILEMEGLGIDSTFLQEIQNTYRNDIRSCLSALEFLS 425
>gi|448081944|ref|XP_004195012.1| Piso0_005549 [Millerozyma farinosa CBS 7064]
gi|359376434|emb|CCE87016.1| Piso0_005549 [Millerozyma farinosa CBS 7064]
Length = 788
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 148/352 (42%), Gaps = 70/352 (19%)
Query: 319 KAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIV-----GNQQLVKQLHTWLA 373
K+ I+ KT +K+ G+ + WTEKY PN V GN + + + WL
Sbjct: 106 KSAIQGEKTRKRESKKVGEKL------WTEKY---CPNRFVDLCSAGNDKQYRLILHWLR 156
Query: 374 HWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDS 433
W D + + D +K ++ G PG+GKT AA ++ + G+ E+NA++S
Sbjct: 157 KW-----DPLVFKKRAVEEDGDFKKILLICGPPGIGKTVAAHILAKQSGYSVQEINAANS 211
Query: 434 RGK--ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG-MSAGDRG 490
K +S G +N ++ L AL+ N S + T L++DE+D +AGD
Sbjct: 212 MDKLPQSDTLSGAQGFANVSAALRLKITNALTTNSLTSNNKPTCLVIDEIDSSANAGDIM 271
Query: 491 GI-ADLI-------------------ASIKISKI------PIICICNDRYSQK------- 517
+ DL+ AS K K PIICI ND YS
Sbjct: 272 RVLYDLVQLDRKKARRTTKPKTFGSKASSKDQKKEFSLNRPIICIANDIYSTSGSRFNKS 331
Query: 518 --LKSLVNYCSDLRFRKPR-------------KQEIAKRLMQIANAEGLEVNEIALEELA 562
L+ L + FRKP + + + LM I +AE L ++ + E+
Sbjct: 332 ASLEKLRQISEIISFRKPHLAKSSVNSKPGNSVRSLKEHLMVINDAEKLGMDYQEIGEVI 391
Query: 563 DRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
D GDIR IN +Q+ +S + + KD+ ++ + V+ LF
Sbjct: 392 DVCEGDIRACINYMQFNGRKISTDLIEPPKSANKGQNKDKHMTWISMVETLF 443
>gi|393218168|gb|EJD03656.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 338
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 44/240 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP+T +++VGN + +++L R+G + I+S
Sbjct: 17 LPWVEKYRPQTLDDVVGNSETIERLKV-------------IARDGNCPH-------IIIS 56
Query: 404 GSPGMGKTTAAK-LVCQMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ L QMLG +E+NASD RG + N IK
Sbjct: 57 GLPGIGKTTSIHCLAHQMLGEAYKDGVLELNASDERGIDVVR----------NKIKAFAQ 106
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI-KISKIPIICICNDRYSQK 517
+ + +H ++I+DE D M++G + + + ++ + C +++ +
Sbjct: 107 KKV---TLPPGRHK--IVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNMSNKIIEP 161
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
++S C+ LR+ K R QEI KRL++I E ++ N+ L L GD+R AIN LQ
Sbjct: 162 IQS---RCAILRYAKLRDQEILKRLLEICEMEQVQYNDDGLTALIFTSEGDMRQAINNLQ 218
>gi|118576833|ref|YP_876576.1| replication factor C/ATPase involved in DNA replication
[Cenarchaeum symbiosum A]
gi|118195354|gb|ABK78272.1| replication factor C/ATPase involved in DNA replication
[Cenarchaeum symbiosum A]
Length = 386
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 147/349 (42%), Gaps = 61/349 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W+EK+RP+ +VGN++ L W + W + GTK +L
Sbjct: 1 MMWSEKHRPRDIPSMVGNEEARAALSGWFSKWKK-----GTK-------------PVLLV 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT A L + G+ I +NASD+R K+ NE LS
Sbjct: 43 GPPGTGKTTVANLAAKAHGYDVISLNASDARSKSRI-------------------NEVLS 83
Query: 464 ANM-DRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
+ + S ++ +DEVDG+ D GG LI +K +PI+ N S K+KS+
Sbjct: 84 PVLGNVSVLGSPMIFIDEVDGIHGRSDFGGAEALIKILKEPAVPIVLAANSDASPKMKSI 143
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
+ FR + + L ++ + EG ++ A ++ GDIR +N Q ++
Sbjct: 144 KKTSKLIPFRPLPPRLMRVYLRKVLSEEGASLSPGAEIKVISESRGDIRSMLNLAQSLAG 203
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPL-L 640
+D ++ S + D+ ++ F K + E + + P
Sbjct: 204 G-----FDPPTEK---SFEKLDVE--AGINAFF-----KAKTPEEARAVLYAMQIDPREK 248
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
I Y + SS E+ R+ + ISD D+ +IRR QQW+L
Sbjct: 249 IGAFYSSVITSSLPAGEMSRVLRV------ISDADVLYGRIRRTQQWRL 291
>gi|443404653|ref|YP_007378992.1| replication factor C large subunit [Halovirus HVTV-1]
gi|441462164|gb|AGC34456.1| replication factor C large subunit [Halovirus HVTV-1]
Length = 417
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 127/278 (45%), Gaps = 59/278 (21%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
SS +W EK+RP++ +E+ GN +K++ W W ++ +
Sbjct: 6 SSNSWVEKHRPQSFSELQGNNAALKRIREWADEWE------------------PGDQGQL 47
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK-ISKGIGGSNANSIKELVSNE 460
L G PG GKTT A +V LG ++NAS +R D + ++ I S A+ ++LV
Sbjct: 48 LVGPPGTGKTTTAYVVSDQLGMPLNQINASSARKTDDIRDMAASIEASPADGNRQLV--- 104
Query: 461 ALSANMDRSKHPKTVLIMDEVDGM-SAGDRGGIADLIASIKISKIPIICICNDRYS--QK 517
++DEVDG A ++ + D + S PII N+ Y
Sbjct: 105 ----------------LLDEVDGWHHAANKQPLYDALDS---PANPIILTANEEYDVPDG 145
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+K+ VN D + K + A ++ +IA EG+E++E E LA R D+R AIN LQ
Sbjct: 146 IKNRVN-SEDFKLGKRSR---AAKIREIAEKEGVELDEHDEERLAQR--PDLRSAINDLQ 199
Query: 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615
M+ S + +DD ++ D F A+ ++ G
Sbjct: 200 MMAESDVPLGFDD---------REWDEGEFDAIPEILG 228
>gi|240275902|gb|EER39415.1| chromosome transmission fidelity protein [Ajellomyces capsulatus
H143]
Length = 939
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 112/255 (43%), Gaps = 41/255 (16%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAA- 400
SSL WTEKYR + +++G+++ + + WL W+ TK K + E+A
Sbjct: 203 SSLMWTEKYRARKFKDLIGDERTHRSVLRWLKGWDSIVFPGLTKLKSKVSTNDFEERAHR 262
Query: 401 ---ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK--ADAKISKGIGGSNANSIKE 455
+L+G PG+GKTT A + + G++ +E+NASD R + +I +G N +
Sbjct: 263 KVLLLTGPPGLGKTTLAHVCAKQAGYEVLEINASDERSRDVVKGRIRDAVGTENVKGV-- 320
Query: 456 LVSNEALSANMDRSKHP--KTVLIMDEVDGMSAGDRGGIADLI---------ASIKISKI 504
+ A R + P +++DEVDG+ G + DL+ AS IS
Sbjct: 321 -----TMDAGGKRIRKPGKPVCIVVDEVDGV-GGFMKALIDLVMLDQRNSSNASESISTS 374
Query: 505 --------------PIICICNDRYSQKLKSL--VNYCSDLRFRKPRKQEIAKRLMQIANA 548
P+I ICND Y L+ L + + R+ ++ R+ +
Sbjct: 375 NKGSRKGEKFRLLRPLILICNDVYHPSLRPLRASSIAEIIHVRQASLDKVVLRMKTVFER 434
Query: 549 EGLEVNEIALEELAD 563
EG+ + + L +
Sbjct: 435 EGIPYDGDGVRRLCE 449
>gi|301095569|ref|XP_002896884.1| chromosome transmission fidelity protein, putative [Phytophthora
infestans T30-4]
gi|262108531|gb|EEY66583.1| chromosome transmission fidelity protein, putative [Phytophthora
infestans T30-4]
Length = 881
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 120/296 (40%), Gaps = 74/296 (25%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKR--------------- 386
+++ W +K+RP++ +++ +++ +++ +W+ W+ +F+ KR
Sbjct: 212 NTVLWLDKFRPQSFLDLLSDERTNREVLSWIKSWD-RFVFPKKKRAIGAHSATPAKTSGF 270
Query: 387 ---------NGKKQNDASA------------EKAAILSGSPGMGKTTAAKLVCQMLGFQA 425
QN A++ K ++ G PG GKTT A +V + G+
Sbjct: 271 GALHKSPWSQSLSQNYANSIAGEDDEDKRPFNKIILICGPPGAGKTTLANIVARHAGYNP 330
Query: 426 IEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS 485
IEVNASD R A +K I SI + +I+DE+DG
Sbjct: 331 IEVNASDDRT-APVLRNKIISAMEMQSI--------------WGERKPNCIILDEIDGAM 375
Query: 486 AGDRG--GIADLIASIKISKI-------------------PIICICNDRYSQKLKSLVNY 524
G G GI ++I I + + P+ICICND Y+ L+ L
Sbjct: 376 NGSDGKSGI-EVIQEIVNAPLERKKAGAKTAAKNRHPLTRPLICICNDLYASVLRPLRQM 434
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
P Q + RL I EG+ + AL L + DIR +N LQ+ +
Sbjct: 435 AKIFTLDAPHSQRLVTRLKCICRHEGIRASTGALATLCSSADNDIRYCLNTLQFQT 490
>gi|327287589|ref|XP_003228511.1| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Anolis carolinensis]
Length = 987
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 119/286 (41%), Gaps = 66/286 (23%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLD------------TGTKRNGKKQN- 392
W +++ P+ E++ + + L WL W+ T R K+Q+
Sbjct: 302 WVDRFSPRHYVELLSDDFTNRCLLKWLKLWDRVVFGREQPPKKARHEATPAPRPAKEQSS 361
Query: 393 ------DASAE--------------KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432
A+ E K A+L G PG+GKTT A ++ + G+ +E+NASD
Sbjct: 362 KWKSKAQATEEALEAQLDPQNRPKYKVALLCGPPGLGKTTLAHVIAKHAGYNVVEMNASD 421
Query: 433 SRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG-- 490
R +A ++ + S+ L +NE L++DE+DG
Sbjct: 422 DRS-PEAFKTRIEAATQMRSV--LGANEK-----------PNCLVIDEIDGAPTASINVL 467
Query: 491 -GIADLIASIKISKI----------------PIICICNDRYSQKLKSLVNYCSDLRFRKP 533
GI + A+ K S+ PIICICND+Y L+ L L F
Sbjct: 468 LGIVNRKAAEKESEPGSGKTKRRKEGGLLLRPIICICNDQYVPSLRLLRQQSFLLNFPTT 527
Query: 534 RKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ + +RL ++ +G++ + AL L ++ DIR IN LQ++
Sbjct: 528 SQSRLVQRLQEVTACQGMKADPGALVALCEKTENDIRSCINTLQFL 573
>gi|297741990|emb|CBI33777.3| unnamed protein product [Vitis vinifera]
Length = 235
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 26/191 (13%)
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
+L G PG+GKTT A + + G++ +E+NASD R + + +K + NS+
Sbjct: 32 LLCGPPGLGKTTLAHVAAKHCGYRVVEINASDDRSSSTIE-AKILDVVQMNSV------- 83
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI---------PIICICN 511
M SK L++DE+DG +G + ++ + I + P+ICICN
Sbjct: 84 -----MADSK--PNCLVIDEIDGALGDGKGAVEVILKMVSIERKGHKTASLSRPVICICN 136
Query: 512 DRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN--GDI 569
D Y+ L+ L F +P + RL I N EGL+ N AL L + DI
Sbjct: 137 DLYAPALRPLRQVAKVHIFVQPTVSRVVSRLKYICNMEGLKTNSTALAALTEYTGEMCDI 196
Query: 570 RMAINQLQYMS 580
R +N LQ+++
Sbjct: 197 RSCLNTLQFLN 207
>gi|357120156|ref|XP_003561795.1| PREDICTED: uncharacterized protein LOC100837229 [Brachypodium
distachyon]
Length = 1272
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 123/287 (42%), Gaps = 59/287 (20%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK-------FLDTGTKRNGKKQNDASA-- 396
WT+KYRP+T ++ GN + VK L WL W+EK + G+ +G Q+++
Sbjct: 396 WTDKYRPETAVQVCGNMEHVKFLSEWLKGWDEKGHKNKQNGVTNGSINDGYCQDESDTDC 455
Query: 397 -------EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA-------DAKIS 442
E +++G G GK+ A + GF IEVN SD+R A +A S
Sbjct: 456 SEEASDFENVLLITGPVGCGKSAAVFACAREQGFNVIEVNTSDTRNGAYVKQKFEEATKS 515
Query: 443 KGIGGSNANSIKELVSNEAL---SANMDRSKH-------------------------PKT 474
G+ + + N++L S DR+++ KT
Sbjct: 516 HGLEKWSQEEVTTPPRNDSLDPTSGIPDRTEYNQSISCSVKCYSSSKSSDEAPKQVMNKT 575
Query: 475 VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDR---YSQKLKSLVNYCSDLRFR 531
+++ ++VD + DRG I+ ++ + +K PII N + L LV L F+
Sbjct: 576 LILFEDVDTVFDEDRGFISTILKIAETTKWPIILTSNKKDPSLPHLLDQLV-----LDFK 630
Query: 532 KPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
P E+ + I +EG+ V L+ + + GDIR LQ+
Sbjct: 631 YPSSGELLSHVGMICKSEGVNVTASQLKYIINACLGDIRRTTLLLQF 677
>gi|255514171|gb|EET90433.1| AAA ATPase central domain protein [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 406
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 102/181 (56%), Gaps = 24/181 (13%)
Query: 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
K ++ G G+GK+ AA+L+ + G+ +E NASD R K +SI +L+
Sbjct: 39 KPLMVYGPSGVGKSAAARLLAKSKGWNIVEKNASDYRDK--------------DSISKLI 84
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSA----GDRGGIADLIASIKISKIPIICICNDR 513
++ A+S N+ S++ ++IMDE+D +++ G + I++L+A SK PII I ND
Sbjct: 85 ASAAISRNLFGSRN---IIIMDEIDELNSRFDKGAQAAISELVAK---SKNPIIFIANDM 138
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
+ Q + L + ++F+K K E+A L + L++++ +E +A R +GD+R AI
Sbjct: 139 WDQSISFLRGKTTPVQFKKLAKPEVALALKNLRARHKLDIDDDFIEAIASRSDGDVRSAI 198
Query: 574 N 574
N
Sbjct: 199 N 199
>gi|13541365|ref|NP_111053.1| replication factor C large subunit [Thermoplasma volcanium GSS1]
gi|42559520|sp|Q97BC2.1|RFCL_THEVO RecName: Full=Replication factor C large subunit; Short=RFC large
subunit; AltName: Full=Clamp loader large subunit
gi|14324749|dbj|BAB59676.1| replication factor C subunit [Thermoplasma volcanium GSS1]
Length = 420
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 133/295 (45%), Gaps = 62/295 (21%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W +KYRPK +++ ++++ +++ +W+ W E G+ + ++A IL
Sbjct: 1 MEWADKYRPKRIEDLIVSEEIRQKIQSWIDAWEE-----GSPK----------KRALILY 45
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G G GKT+AA + G +E+NAS+ R N S+K +L
Sbjct: 46 GVQGSGKTSAAYAIAGTFGLPVVEMNASEQR--------------NRESMKATALMASLY 91
Query: 464 ANMDRS--KHPKTVLIMDEVDGM-------SAGDRGGIADLIASIKISKIPIICICNDRY 514
A++ S + P V+++DE D + GD GG+ +L +K ++ P+I ND Y
Sbjct: 92 ADLGASDFRKPSKVILIDEADNIFESNNPKRGGDTGGVYELSKIVKETRNPVIITMNDFY 151
Query: 515 SQKLKS----LVNYCSDLRFRKPR-----------KQEIAKRLMQIANAEGLEVNEIALE 559
+ K+ ++N + F KP K+ + R+ I N EG + + +
Sbjct: 152 EFRKKNYSSEVINNSESIEF-KPYARRLDRNYNEFKKNVRNRIKWIINQEGFSLPDDIIN 210
Query: 560 ELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ D+ DIR IN ++ ++S S I ++ R D S + VDK F
Sbjct: 211 SIIDKNAPDIRSIINDVEAAAVSQSSISQNNDR--------DTVESVYYLVDKAF 257
>gi|315230688|ref|YP_004071124.1| replication factor C small subunit [Thermococcus barophilus MP]
gi|315183716|gb|ADT83901.1| replication factor C small subunit [Thermococcus barophilus MP]
Length = 326
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 158/345 (45%), Gaps = 63/345 (18%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP+ ++IVG +VK+L + ++ TG+ + + +G
Sbjct: 15 WVEKYRPQRLDDIVGQDHIVKRL--------KHYVKTGSMPH------------LLFAGP 54
Query: 406 PGMGKTTAAK-LVCQMLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
PG+GKTTAA L ++ G +E+NASD RG N I+E V
Sbjct: 55 PGVGKTTAALCLTRELFGEHWRHNFLELNASDERG--------------INVIREKVKEF 100
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL-K 519
A + + + ++ +DE D ++ + + ++ + + I CN YS K+ +
Sbjct: 101 ARTKPIGGASF--KIIFLDEADALTQDAQQALRRMMEMFS-NNVRFILSCN--YSSKIIE 155
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY- 578
+ + C+ RFR + ++IAKR+ IA EGLE+ E L+ L GD+R AIN LQ
Sbjct: 156 PIQSRCAIFRFRPLKDEDIAKRIRFIAENEGLELTEEGLQALLYIAEGDLRRAINVLQAA 215
Query: 579 -----------MSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF---GFNGGKLRMD 624
+ L S + +DIR+ +L + + + + ++ G +G + +
Sbjct: 216 AALDTKITDENVFLVASRARPEDIREMMLMALEGNFLKAREKLREILLKQGLSGEDVLIQ 275
Query: 625 ---ERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIAR 666
E +L +S+P V L + N+R + ++ +L+A+
Sbjct: 276 MHKEVFNLPISEPKKVALADKIGEYNFRLVEGANEMIQLEALLAQ 320
>gi|225018630|ref|ZP_03707822.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum
DSM 5476]
gi|224948624|gb|EEG29833.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum
DSM 5476]
Length = 659
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Query: 197 VPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAK 256
VP D L GLTFVI+GTL +++REEA+ LI+++GG+ TGSVSKKT+YLL E+ AG+K
Sbjct: 579 VPVQKGDKLAGLTFVITGTLPTMKREEAKALIEQNGGKATGSVSKKTSYLLAGEE-AGSK 637
Query: 257 STKAKELGTPFLTEDGLFDMIR 278
TKA+ LG P L E+ MI+
Sbjct: 638 LTKAQSLGVPVLDEEQFLKMIQ 659
>gi|85000801|ref|XP_955119.1| replication factor [Theileria annulata strain Ankara]
gi|65303265|emb|CAI75643.1| replication factor, putative [Theileria annulata]
Length = 299
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 122/252 (48%), Gaps = 44/252 (17%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP T EI+GN ++ K+L +F+ + G N +L G
Sbjct: 8 WIEKYRPSTLEEIIGNPEITKRL---------QFI----AKEGNMPN-------LLLCGP 47
Query: 406 PGMGKTTAAKLVC-QMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
PG GKTT+ + +MLG +E+NASD RG + ++E + N
Sbjct: 48 PGTGKTTSVLCLAREMLGSHFKSAVVELNASDDRG--------------VDVVRENIKNF 93
Query: 461 AL-SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLK 519
A S + +KH ++I+DEVD M+ + + I I S CN + ++ ++
Sbjct: 94 AKKSLILPANKH--KIVILDEVDSMTEPAQQALRR-IMEIYSSTTRFALACN-QSNKIIE 149
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ + C+ +R+ K + ++I KRL+ I + E L + +E L +GD+R A+N LQ +
Sbjct: 150 PIQSRCAVIRYSKLKDEQILKRLVTICDLENLTYTDEGMEALLFSADGDLRRAVNNLQIV 209
Query: 580 SLSLSVIKYDDI 591
S ++ D++
Sbjct: 210 SAGFKIVTKDNV 221
>gi|237843887|ref|XP_002371241.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
gi|211968905|gb|EEB04101.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
gi|221483809|gb|EEE22121.1| replication factor C subunit, putative [Toxoplasma gondii GT1]
gi|221504190|gb|EEE29865.1| replication factor C subunit, putative [Toxoplasma gondii VEG]
Length = 336
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 44/252 (17%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP+T +++VGN Q++++L N L +L+G
Sbjct: 34 WIEKYRPETLDDVVGNDQVMRRLRIIAREGNMPHL--------------------MLAGP 73
Query: 406 PGMGKTTAAKLVC-QMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
PG GKT++ +C Q+LG + +E+NASD R + I+E V +
Sbjct: 74 PGTGKTSSVLCLCKQLLGSRWRAYTLELNASDER--------------TIDVIREKVKHF 119
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK-ISKIPIICICNDRYSQKLK 519
A D ++I+DEVD M+ + + ++ ++ + C + + ++
Sbjct: 120 A-KEKRDLPAGRHKIVILDEVDAMTEAAQQALRRIMEQFSDTTRFALAC---NSSASVIE 175
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L + C+ LRFRK ++ +RL Q+ E L+V + +E + +GD+R A+N LQ
Sbjct: 176 PLQSRCAILRFRKLDDSQLVRRLRQVCAMEALQVTDDGIEAIVFCADGDMRSALNNLQST 235
Query: 580 SLSLSVIKYDDI 591
+ V+ +++
Sbjct: 236 VSAFGVVNRENV 247
>gi|198426342|ref|XP_002130063.1| PREDICTED: similar to Replication factor C (activator 1) 2, 40kDa
[Ciona intestinalis]
Length = 336
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 119/254 (46%), Gaps = 44/254 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP +++VGN+ V +L E F + G N I++
Sbjct: 17 LPWVEKYRPTKLSDVVGNEATVSRL--------EVFANEGNVPN------------IIIA 56
Query: 404 GSPGMGKTTAAKLVCQ-MLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG GKTT+ + + MLG +E+NAS+ RG + N IK
Sbjct: 57 GPPGAGKTTSIMCLARTMLGASYDVAVLELNASNDRGIDVVR----------NKIKMFAQ 106
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI-KISKIPIICICNDRYSQK 517
+ + + KH ++I+DE D M++G + + + K ++ + C +D+ +
Sbjct: 107 KKV---TLPKGKHK--IIILDEADSMTSGAQQALRRTMEIYSKTTRFALACNQSDKIIEP 161
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
++S C+ LR+ K ++I RLM++ + EG+ ++ LE L GD+R A+N LQ
Sbjct: 162 IQS---RCAVLRYSKLSDEQILSRLMEVIDKEGVRYDDSGLEALLFTAQGDMRQALNNLQ 218
Query: 578 YMSLSLSVIKYDDI 591
S I D++
Sbjct: 219 STHQGFSFINSDNV 232
>gi|395334442|gb|EJF66818.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 344
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 48/242 (19%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP+ +++VGN +++L R+G + I+S
Sbjct: 23 LPWVEKYRPQVLDDVVGNTDTIERLKV-------------IARDGNCPH-------IIIS 62
Query: 404 GSPGMGKTTAAK-LVCQMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ L Q+LG +E+NASD RG + N IK
Sbjct: 63 GMPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVR----------NKIKAFAQ 112
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGI---ADLIASIKISKIPIICICNDRYS 515
+ + +H ++I+DE D M+AG + + ++ A+ ++ + C +++
Sbjct: 113 KKV---TLPSGRHK--IVILDEADSMTAGAQQALRRTMEIYANT--TRFALACNMSNKII 165
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ ++S C+ LR+ K R E+ KRL++I E ++ N+ LE L GD+R AIN
Sbjct: 166 EPIQS---RCAILRYSKLRDTEVLKRLLEICEMEKVQYNDEGLEALIFTAEGDMRQAINN 222
Query: 576 LQ 577
LQ
Sbjct: 223 LQ 224
>gi|403163867|ref|XP_003323926.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164648|gb|EFP79507.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 342
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 135/285 (47%), Gaps = 57/285 (20%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP ++I GN +++L R+G + I+SG+
Sbjct: 23 WVEKYRPIILDDITGNTDTIERLKV-------------IARDGNCPH-------IIISGA 62
Query: 406 PGMGKTTAAKLVCQMLGFQA-----IEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
PG+GKTT+ + L A +E+NASD RG + N IK +N
Sbjct: 63 PGIGKTTSILCLAHALLGDAYKEGVLELNASDERGIDVVR----------NKIKTF-ANT 111
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
++ R K ++I+DE D M+AG + + + I + CN+ S+ ++
Sbjct: 112 KVTLPAGRHK----IIILDEADSMTAGAQQALRRTM-EIYSNTTRFALACNNS-SKIIEP 165
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ--- 577
+ + C+ LR+ K + QE+ KRL++IA AE ++ E L L GD+R AIN LQ
Sbjct: 166 IQSRCAILRYGKLKDQEVLKRLVEIATAENVKYAEDGLAALIFTSEGDMRQAINNLQSTV 225
Query: 578 ----YMSLSLSVIKYDD-----IRQRLLSSAKDEDISPFTAVDKL 613
++S SV K D + Q+LLS+ + D+S A+D+L
Sbjct: 226 SGFGFVSAE-SVFKVCDQPHPVVIQKLLSACEKGDLSD--ALDQL 267
>gi|393796559|ref|ZP_10379923.1| ATPase central domain-containing protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 368
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 110/235 (46%), Gaps = 37/235 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W+EKYRP+ ++++GN++ + W W + GTK +L
Sbjct: 4 LMWSEKYRPQNISDMIGNEESRSSIIEWFTKWKK-----GTK-------------PLLLV 45
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A + + G+ + +NASD R K+ I E+++ +
Sbjct: 46 GPPGIGKTTIAYITAKQFGYDMVGLNASDVRSKS--------------RINEILT--PVL 89
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
N+ P ++ +DEVDG+ GD GG LI +K +PI+ N S K+KS+
Sbjct: 90 GNVSLLGIP--MIFIDEVDGIHGRGDYGGAEALIDILKEPTVPIVLAANSDESDKMKSIK 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ F+ + + L I + E +++ +L ++ +R GDIR IN Q
Sbjct: 148 KVVKTISFKPIPPRLLKVYLENILSKENAKLSPGSLIKVIERSRGDIRSMINLTQ 202
>gi|350581877|ref|XP_003124720.3| PREDICTED: chromosome transmission fidelity protein 18 homolog [Sus
scrofa]
Length = 910
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 125/306 (40%), Gaps = 78/306 (25%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL--DTGTKR--------NGKKQNDAS 395
W +++ P+ E++ + + L WL W+ D T++ G K+ AS
Sbjct: 215 WVDEFAPQRYTELLSDDFTNRCLLKWLKLWDPVVFGQDRPTRKPRPSVEPACGGKEATAS 274
Query: 396 A------------------------EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431
+ +K A+L G PG+GKTT A ++ + G+ +E+NAS
Sbjct: 275 SKWKSHEQVLEEMLEAELDPSGRPRQKVALLCGPPGLGKTTLAHVIARHAGYCVVEMNAS 334
Query: 432 DSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG-------- 483
D R + I+ E++ + R L++DE+DG
Sbjct: 335 DDRSPEAFR----------TRIEAATQMESVLGSGGRPN----CLVIDEIDGAPTAAINV 380
Query: 484 -MSAGDRGGIAD---------------LIASIKISKIPIICICNDRYSQKLKSLVNYCSD 527
+S DR G + A + PIICICND+++ L+ L
Sbjct: 381 LLSVLDRKGPQEAEPGAPAMAAGGGRRRRAEGGLLMRPIICICNDQFAPSLRQLKPQALL 440
Query: 528 LRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS------L 581
L F + +RL +I+ G++ + AL L ++ + DIR IN LQ++ L
Sbjct: 441 LHFPPTLPSRLTQRLQEISQQRGMQADPGALAALCEKTDNDIRACINALQFLHGRGRRKL 500
Query: 582 SLSVIK 587
S+ V++
Sbjct: 501 SIQVVQ 506
>gi|255088619|ref|XP_002506232.1| predicted protein [Micromonas sp. RCC299]
gi|226521503|gb|ACO67490.1| predicted protein [Micromonas sp. RCC299]
Length = 329
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 110/246 (44%), Gaps = 40/246 (16%)
Query: 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK 398
+ +S W EKYRP+ N++ +++V+ L EK L+T +
Sbjct: 1 MTSTSQPWVEKYRPRNINDVAHQEEVVRTL--------EKALETANMPH----------- 41
Query: 399 AAILSGSPGMGKTTAAKLVC------QMLGFQAIEVNASDSRGKADAKISKGIGGSNANS 452
+ G PG GKTT A +C +++ + +E+NASD RG + + N
Sbjct: 42 -MLFYGPPGTGKTTCALAICRQLYGPELIKSRVLELNASDERGISVVR----------NK 90
Query: 453 IKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI-KISKIPIICICN 511
IK S P +LI+DE D M+ + + + + K+++ I+C
Sbjct: 91 IKGFASTAVGQGAPGYPSPPYKILILDEADSMTNDAQSALRRTMETYSKVTRFFILC--- 147
Query: 512 DRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571
+ S+ ++ + + C+ RF+ + + RL IA AEGL + E E + GD+R
Sbjct: 148 NYISRIIEPIASRCAKFRFKPLGHEVMGDRLKFIATAEGLTLGEGCYEACSTHSGGDMRK 207
Query: 572 AINQLQ 577
AI LQ
Sbjct: 208 AITLLQ 213
>gi|170084297|ref|XP_001873372.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650924|gb|EDR15164.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 341
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 110/239 (46%), Gaps = 42/239 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP +++VGN +++L R+G + I+S
Sbjct: 20 LPWVEKYRPTVLDDVVGNSDTIERLKV-------------IARDGNCPH-------IIIS 59
Query: 404 GSPGMGKTTAAK-LVCQMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ L Q+LG +E+NASD RG + N IK
Sbjct: 60 GLPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDDRGIDVVR----------NKIKTFAQ 109
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+ + +H ++I+DE D M+ G + + + S C+ + ++ +
Sbjct: 110 KKV---TLPPGRH--KIIILDEADSMTPGAQQALRRTMEIF--SNTTRFCLACNMSNKII 162
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ + + C+ LR+ K R QEI KRL++I E +E N+ L L GD+R AIN LQ
Sbjct: 163 EPIQSRCAILRYAKLRDQEILKRLLEICEMEKVEYNDDGLTALIFTSEGDMRQAINNLQ 221
>gi|281209635|gb|EFA83803.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 347
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 116/266 (43%), Gaps = 42/266 (15%)
Query: 325 MKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGT 384
M +PA + + L W EKYRPK L +AH E DT +
Sbjct: 1 MTDTPTPALSSKEQLFHDRLPWVEKYRPK-------------DLSGLIAH--EDITDTVS 45
Query: 385 KRNGKKQNDASAEKAAILSGSPGMGKTT-----AAKLVCQMLGFQAIEVNASDSRGKADA 439
K K ++ + G PG GKT+ A KL + +E+NASD RG
Sbjct: 46 KLIAK-----NSLPHLLFYGPPGTGKTSTIQAIARKLYGESYSRMVLELNASDDRG---- 96
Query: 440 KISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI 499
+ ++E + A S M S +P ++I+DE D M+ + + +I
Sbjct: 97 ----------IDVVREQIKTFASSMFM-FSNYPYKLIILDEADSMTNPAQTALRRVIE-- 143
Query: 500 KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALE 559
K ++ C+ + S+ L +L + C+ RF + I KR+ +I E L+VN+ AL
Sbjct: 144 KYTRTTRFCMICNYVSKILPALQSRCTRFRFSPLPRSAITKRMKEIIECESLKVNDDALN 203
Query: 560 ELADRVNGDIRMAINQLQYMSLSLSV 585
+ GD+R +N LQ S+S+ V
Sbjct: 204 SIITLSEGDMRKCLNILQSASMSIDV 229
>gi|123399546|ref|XP_001301493.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121882680|gb|EAX88563.1| hypothetical protein TVAG_409150 [Trichomonas vaginalis G3]
Length = 324
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 118/252 (46%), Gaps = 44/252 (17%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP+ +++VGN ++++L A N L IL+G
Sbjct: 7 WVEKYRPRVLDDVVGNTAVIERLRALAAEGNIPNL--------------------ILTGP 46
Query: 406 PGMGKTTAAKLVC-QMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
PG GKTT+ +C Q+LG + IE+NASD RG + +IKE
Sbjct: 47 PGCGKTTSLLALCHQLLGDKEKDAVIELNASDDRGIDVVR----------KNIKEFAKRH 96
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI-KISKIPIICICNDRYSQKLK 519
+ +H V+++DE D M+ + + ++ + K ++ C +++ + ++
Sbjct: 97 V---ALPEGRHK--VVLLDESDSMTDAAQQAMRRIMENYTKTTRFVFACNQSEKVIEPIQ 151
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
S C+ +RF + + EIA RLM+I EG + + LA +GD+R AIN LQ
Sbjct: 152 S---RCAIVRFSRVEENEIAARLMKICELEGFKPESEGIATLARLADGDMRTAINGLQST 208
Query: 580 SLSLSVIKYDDI 591
+ ++ +++
Sbjct: 209 YVRYGLVTQENV 220
>gi|169350953|ref|ZP_02867891.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552]
gi|169292015|gb|EDS74148.1| DNA ligase (NAD+) [Clostridium spiroforme DSM 1552]
Length = 682
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
Query: 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKE 262
D G+TFV++GTL +L R+EA D+I++HGG+V+GSVSKKTNYLL E+ AG+K KA+
Sbjct: 608 DRFDGMTFVVTGTLPTLSRKEASDIIEKHGGKVSGSVSKKTNYLLAGEN-AGSKLIKAQS 666
Query: 263 LGTPFLTEDGLFDMIR 278
L + E+ LF+M++
Sbjct: 667 LNVKIIDEETLFEMVK 682
>gi|390471048|ref|XP_003734424.1| PREDICTED: LOW QUALITY PROTEIN: chromosome transmission fidelity
protein 18 homolog [Callithrix jacchus]
Length = 1089
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 27/226 (11%)
Query: 371 WLAHWN--EKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428
W +H E+ L+ G + + ++ K A+L G PG+GKTT A ++ + G+ +E+
Sbjct: 458 WKSHEQVLEEVLEAGLDPSQRPRH-----KVALLCGPPGLGKTTLAHVIARHAGYSVVEM 512
Query: 429 NASDSRG--------KADAKISKGIGGS---NANSIKELVSNEALSANMDRS----KHPK 473
NASD R +A ++ +G S N I E+ + N+ S K P+
Sbjct: 513 NASDDRSPEIFRTRIEAATQMESVLGASGKPNCLVIDEIDGAPMAAINVLLSIVNRKGPR 572
Query: 474 TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKP 533
+ + +S G R A + PIICICND++S L+ L L F
Sbjct: 573 EAELQGQAMPLSGGRRRR-----AEGALLMRPIICICNDQFSPSLRQLKQQALLLHFPPT 627
Query: 534 RKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ +RL +++ GL+ + L L ++ + DIR IN LQ++
Sbjct: 628 LPSRLVQRLQEVSLRRGLKADPGVLAALCEKTDNDIRACINTLQFL 673
>gi|350398060|ref|XP_003485075.1| PREDICTED: hypothetical protein LOC100742770 [Bombus impatiens]
Length = 1189
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 139/301 (46%), Gaps = 26/301 (8%)
Query: 298 VAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNE 357
V + + K+ P I + T K+ K V + K + Q +WT KYRPK E
Sbjct: 667 VISLIVKEQPNKIVSPRTKTKKSKQSGRKEVI---EYKTKEDQFEYCSWTYKYRPKCSQE 723
Query: 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE-------KAAILSGSPGMGK 410
IVGN++ V +L WL W F + + + S + + A+L G G GK
Sbjct: 724 IVGNEEAVAKLREWLLGWKPMFTNEDVSSGDEFYSSDSCQTRISENNQVAVLLGPHGCGK 783
Query: 411 TTAAKLVCQMLGFQAIEVNASDSR-GK------ADAKISKGIGGSNANSI-KELVSNEAL 462
T + + G+ +E+NAS R GK +A S I + S+ +LVS+E +
Sbjct: 784 TASVYALADEFGYIVLELNASSRRTGKKLLKELEEATKSHRIKKNEKISVFCDLVSDEIM 843
Query: 463 SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ ++ +++++++VD + D G I+ SK PI+ C D S L +
Sbjct: 844 PKKIPQN----SLILLEDVDIIFEEDEGFISATYQLASNSKRPIVMTCRDVCSH-LNKMA 898
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAE-GLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
+ + F++P + L I+ AE G ++ + EL +GD+R AI QLQY+ L
Sbjct: 899 PQQNRIYFQEPVGNRVCVLLELISLAETGYKLPSNCITELLQ--SGDLRKAILQLQYLLL 956
Query: 582 S 582
S
Sbjct: 957 S 957
>gi|432098949|gb|ELK28439.1| Chromosome transmission fidelity protein 18 like protein, partial
[Myotis davidii]
Length = 939
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 22/205 (10%)
Query: 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG--------KADAKISK--GIG 446
+K A+L G PG+GKTT A ++ + G+ +E+NASD R +A ++ GIG
Sbjct: 311 QKVALLCGPPGLGKTTLAHVIARHAGYCVVEMNASDDRSPEAFRTHIEAATQMESVLGIG 370
Query: 447 G-SNANSIKEL--VSNEALSANMDRSKHPKTVLIMDEVD--GMSAGDRGGIADLIASIKI 501
G N I E+ L K +++ +D G + GG A L +
Sbjct: 371 GKPNCLVIDEIDGAPTVGLLGAWPVGKQAAINVLLSIIDRKGPKEAELGGRATLAGEGRR 430
Query: 502 SKI-------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVN 554
+ P+ICICND+++ L+ L L F + +RL +I+ +GL+ +
Sbjct: 431 PRAEGGLLMRPVICICNDQFAPSLRQLKQQAFLLHFPPTLPSRLIQRLQEISLRQGLQAD 490
Query: 555 EIALEELADRVNGDIRMAINQLQYM 579
AL L ++ + DIR IN LQ++
Sbjct: 491 PGALAALCEKTDNDIRACINTLQFL 515
>gi|288931716|ref|YP_003435776.1| Replication factor C [Ferroglobus placidus DSM 10642]
gi|288893964|gb|ADC65501.1| Replication factor C [Ferroglobus placidus DSM 10642]
Length = 321
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 109/238 (45%), Gaps = 43/238 (18%)
Query: 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSG 404
W EKYRPKT +E+VG +++++L +++ N L + +G
Sbjct: 5 IWVEKYRPKTLDEVVGQDEIIQRLKSYVKQKNIPHL--------------------LFAG 44
Query: 405 SPGMGKT-TAAKLVCQMLGF----QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSN 459
PG GKT TA L + G IE+NASD RG + + IKE
Sbjct: 45 PPGTGKTATAIALARDLFGEVWRENFIEMNASDERGIDVVR----------HKIKEFART 94
Query: 460 EALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLK 519
+ P ++ +DE D ++A + + + SK+ + + S+ ++
Sbjct: 95 APIGG------APFKIIFLDEADALTADAQAALRRTMEMY--SKVCRFILSCNYVSRIIE 146
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ + C+ +F+ K+ + KRL +IA EGLE+++ ALE L GD R AIN LQ
Sbjct: 147 PIQSRCAVFKFKPVPKEAMKKRLKEIAENEGLEIDDEALEVLIYISGGDFRKAINALQ 204
>gi|212224565|ref|YP_002307801.1| DNA replication ATPase [Thermococcus onnurineus NA1]
gi|212009522|gb|ACJ16904.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1]
Length = 326
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 112/238 (47%), Gaps = 45/238 (18%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP+ +IVG + +VK+L + ++ TG+ + + +G
Sbjct: 15 WVEKYRPQRLEDIVGQEHIVKRL--------KHYVKTGSMPH------------LLFAGP 54
Query: 406 PGMGKTTAA-KLVCQMLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
PG+GKTTAA L ++ G +E+NASD RG N I+E V
Sbjct: 55 PGVGKTTAALALARELFGEHWRHNFLELNASDERG--------------INVIREKVKEF 100
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL-K 519
A + + + ++ +DE D ++ + + + + + I CN YS K+ +
Sbjct: 101 ARTKPIGGASF--KIIFLDEADALTQDAQQALRRTMEMFS-TNVRFILSCN--YSSKIIE 155
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ + C+ RFR +IAKR+ IA EGLE+ E L+ L GD+R AIN LQ
Sbjct: 156 PIQSRCAIFRFRPLNDNDIAKRIKYIAENEGLELTEDGLQALLYVAEGDLRRAINVLQ 213
>gi|428671876|gb|EKX72791.1| replication factor C subunit 4, putative [Babesia equi]
Length = 324
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 123/252 (48%), Gaps = 44/252 (17%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP + +EI+GN ++ K+L ++A + G N +L G
Sbjct: 8 WIEKYRPGSLDEIIGNPEITKRLQ-YIA------------KEGNMPN-------LLLCGP 47
Query: 406 PGMGKTTAAKLVC-QMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
PG GKTT+ + +MLG Q IE+NASD RG + ++E + N
Sbjct: 48 PGTGKTTSVLCLAREMLGAQFKSGVIELNASDDRG--------------VDVVRESIKNF 93
Query: 461 AL-SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLK 519
A S + +KH ++I+DEVD M+ + + I I + CN + ++ ++
Sbjct: 94 AKKSLILPPNKHK--IVILDEVDSMTEAAQQALRR-IMEIYSNTTRFALACN-QSTKIIE 149
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ + C+ +RF K + +++ +RLM I E L+ +E L +GD+R A+N LQ +
Sbjct: 150 PIQSRCAVIRFTKLKDEQVLQRLMDICKLEDLKYTNDGMEALLFSADGDLRRAVNNLQNV 209
Query: 580 SLSLSVIKYDDI 591
S +I +++
Sbjct: 210 SAGFDLITKENV 221
>gi|386002033|ref|YP_005920332.1| replication factor C small subunit [Methanosaeta harundinacea 6Ac]
gi|357210089|gb|AET64709.1| Replication factor C small subunit [Methanosaeta harundinacea 6Ac]
Length = 368
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 169/372 (45%), Gaps = 71/372 (19%)
Query: 332 AKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQ 391
+++G I++ W EKYRP + +++VG +++VK+L +++ N L
Sbjct: 39 VRKEGFRIKEE--IWIEKYRPMSLDDVVGQEEIVKRLKSYVRSRNVPHL----------- 85
Query: 392 NDASAEKAAILSGSPGMGKTTAA-KLVCQMLGFQ----AIEVNASDSRGKADAKISKGIG 446
+ SG PG+GKT AA +V ++ G + IE+NASD RG
Sbjct: 86 ---------LFSGPPGVGKTAAAISMVRELFGEEWRGNFIELNASDERG----------- 125
Query: 447 GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPI 506
+ ++ V + A A + ++ V+ +DE D ++ + + + S
Sbjct: 126 ---IDVVRHKVKDFARIAPLGNAEF--KVIFLDEADALTNDAQSALRRTMERYS-SICRF 179
Query: 507 ICICNDRYSQKL-KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV 565
+ CN YS K+ + + + C+ RFR ++ +++R+ IA AEG++V + +
Sbjct: 180 VLSCN--YSSKIIEPIQSRCAVYRFRSLSEEAVSERMKTIAEAEGVKVTPEGMRAIVYVA 237
Query: 566 NGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDI---------SPFTAVDKLF-- 614
GD+R AIN LQ SL + + I Q + ++A+ E I FT L
Sbjct: 238 RGDMRKAINALQAASLMEESVTEETIYQ-ITATARPEQIRDLMKTALAGNFTQARSLLDD 296
Query: 615 -----GFNGGKLRMD-ERIDLSMSD------PDLVPLLIQENYINYRPSSAGRDEVKRLS 662
G +G + + R LS+ D P LV L+ + I++R + + ++ +
Sbjct: 297 LLLVQGLSGEDVIIQIHRQTLSLLDSHELSGPTLVRLMDRIGEIDFRMTEGANERIQLEA 356
Query: 663 LIARAAESISDG 674
L+A A + ++G
Sbjct: 357 LLAYFALAGTEG 368
>gi|405978389|gb|EKC42786.1| Replication factor C subunit 1 [Crassostrea gigas]
Length = 258
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 71/124 (57%), Gaps = 11/124 (8%)
Query: 659 KRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERN 718
+ LSL+ARAA+S+ DGD + IR Q W L S+++ + +IP M G +L Q
Sbjct: 3 RHLSLLARAADSLCDGDRVDRSIRERQSWNLLPSAAMYASVIPGEYMRG---SLPQ---- 55
Query: 719 FNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPLRV 777
F WLGKNST GK R+L++L H L++ +KL +L LDY L K LT+PL V
Sbjct: 56 MVSFPSWLGKNSTTGKTDRILQELRTHMSLSTSANKL---SLNLDYLPYLRKFLTQPLVV 112
Query: 778 LPKD 781
D
Sbjct: 113 KEND 116
>gi|334349834|ref|XP_003342265.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit
2-like, partial [Monodelphis domestica]
Length = 414
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 117/269 (43%), Gaps = 47/269 (17%)
Query: 329 ASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNG 388
++P K G + + L W EKYRP NEIVGN+ V +L + R G
Sbjct: 64 SAPGKAPGTHYE---LPWVEKYRPMKLNEIVGNEDTVSRLEVF-------------AREG 107
Query: 389 KKQNDASAEKAAILSGSPGMGKTT-----AAKLVCQMLGFQAIEVNASDSRGKADAKISK 443
N I+SG PG GKTT A L+ L +E+NAS+ RG +
Sbjct: 108 NVPN-------IIISGPPGTGKTTSILCLARALLGPSLKDAVLELNASNDRGIDVVR--- 157
Query: 444 GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI-KIS 502
N IK + + R +H ++I+DE D M+ G + + + K +
Sbjct: 158 -------NKIKMFAQQKV---TLPRGRH--KIIILDEADSMTDGAQQALRRTMEIYSKTT 205
Query: 503 KIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELA 562
+ + C +D+ + ++S C+ LR+ K ++ RLM I E +E + LE +
Sbjct: 206 RFALACNASDKIIEPIQS---RCAVLRYTKLTDAQVLARLMTIIEKEKVEYTDDGLEAIV 262
Query: 563 DRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
GD+R A+N LQ I +++
Sbjct: 263 FTAXGDMRQALNNLQSTHSGFGFINSENV 291
>gi|383859865|ref|XP_003705412.1| PREDICTED: uncharacterized protein LOC100879348 [Megachile
rotundata]
Length = 1043
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 124/264 (46%), Gaps = 33/264 (12%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL-------------DTGTKR 386
Q + +WT KYRPK+ E+VGN++ +L WL W F+ D+ +
Sbjct: 563 QIENFSWTYKYRPKSTQEVVGNEKAAIKLREWLVGWKLTFINEDSNSGDEFYSSDSSYSK 622
Query: 387 NGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR-GKADAKISKGI 445
N K + A+L G G GKT + V + G+ +E+NAS R GK K +
Sbjct: 623 NNKNN------QVAVLLGPHGSGKTASVYAVAEEFGYTVLELNASSKRTGKKLLKELEEA 676
Query: 446 GGSNANSIKELVSNEALSANMDRSK-HPK-----TVLIMDEVDGMSAGDRGGIADLIASI 499
S KE V++ N++ K PK +++++++VD + D G I+ +
Sbjct: 677 TKSYQIKKKERVTS---LCNLNSDKIIPKKISKNSLILIEDVDIIFEEDEGFISAICQLA 733
Query: 500 KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAE-GLEVNEIAL 558
+K PI+ C D L L S + F+ P +++ L I+ AE G ++ +
Sbjct: 734 SNTKRPIVMTCKD-VCPHLNKLAPQQSRIFFQSPVGNKVSVLLELISLAETGYRLSSSCI 792
Query: 559 EELADRVNGDIRMAINQLQYMSLS 582
EL +GD+R AI QLQY+ LS
Sbjct: 793 TELLQ--SGDLRKAILQLQYLLLS 814
>gi|409083800|gb|EKM84157.1| hypothetical protein AGABI1DRAFT_110722 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 341
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 42/239 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPK +++VGN +++L R+G + I+S
Sbjct: 20 LPWVEKYRPKVLDDVVGNSDTIERLKV-------------IARDGNCPH-------LIIS 59
Query: 404 GSPGMGKTTAAK-LVCQMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ L Q+LG +E+NASD RG + IK+
Sbjct: 60 GLPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIEVVR----------TKIKQFAQ 109
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+ + +H ++I+DE D M+ G + + + S C+ + ++ +
Sbjct: 110 KKV---TLPPGRH--KIVILDEADSMTPGAQQALRRTMEIF--SNTTRFCLACNMSNKII 162
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ + + C+ LR+ K R QEI KRL++I E ++ N+ L L GD+R AIN LQ
Sbjct: 163 EPIQSRCAILRYAKLRDQEILKRLLEICEEEDVKYNDDGLTALIFTSEGDMRQAINNLQ 221
>gi|334182754|ref|NP_001185060.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192020|gb|AEE30141.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 332
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 130/281 (46%), Gaps = 47/281 (16%)
Query: 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK 398
+ QSS W EKYRPK ++ +++V+ L T T + +
Sbjct: 4 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVL-------------TNTLQTADCPH------ 44
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
+ G PG GKTT A + L F +E+NASD RG + IK+ +
Sbjct: 45 -MLFYGPPGTGKTTTALAIAHQL-FGVLELNASDDRGINVVR----------TKIKDFAA 92
Query: 459 NEALSANMDRSKHPK---TVLIMDEVDGMSAGDRGGIADLIASI-KISKIPIICICNDRY 514
A+ +N +S +P ++I+DE D M+ + + + + K+++ IC +
Sbjct: 93 -VAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC---NYI 148
Query: 515 SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAIN 574
S+ ++ L + C+ RF+ ++ ++ R++ I N EGL ++ AL L+ GD+R AI
Sbjct: 149 SRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAIT 208
Query: 575 QLQYMS-LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
LQ + L S I D LL+ + + P V+KLF
Sbjct: 209 YLQSATRLFGSTITSTD----LLNVSG---VVPLEVVNKLF 242
>gi|329765851|ref|ZP_08257417.1| ATPase central domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137694|gb|EGG41964.1| ATPase central domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 364
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 37/233 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W+EKYRP+ ++++GN++ + W W + GTK +L G
Sbjct: 2 WSEKYRPQNISDMIGNEESRSSIIEWFTKWKK-----GTK-------------PLLLVGP 43
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKTT A + + G+ + +NASD R K+ I E+++ + N
Sbjct: 44 PGIGKTTIAYITAKQFGYDVVGLNASDVRSKS--------------RINEILT--PVLGN 87
Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ P ++ +DEVDG+ GD GG LI +K +PI+ N S K+KS+
Sbjct: 88 VSLLGIP--MIFIDEVDGIHGRGDYGGAEALIDILKEPTVPIVLAANSDESDKMKSIKKV 145
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ F+ + + L I + E +++ +L ++ +R GDIR IN Q
Sbjct: 146 VKTISFKPIPPRLLKVYLENILSKENAKLSPGSLIKVIERSRGDIRSMINLTQ 198
>gi|389751171|gb|EIM92244.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 343
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 110/239 (46%), Gaps = 42/239 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP +++VGN + +L R+G + I+S
Sbjct: 22 LPWVEKYRPNILDDVVGNSDTIDRLKV-------------IARDGNVPH-------LIIS 61
Query: 404 GSPGMGKTTAAK-LVCQMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ L Q+LG +E+NASD RG + N IK
Sbjct: 62 GMPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVR----------NKIKAFAQ 111
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+ + +H ++I+DE D M+AG + + + S C+ + ++ +
Sbjct: 112 KKV---TLPPGRHK--IVILDEADSMTAGAQQALRRTMEIF--SNTTRFCLACNMSNKII 164
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ + + C+ LR+ K R EI KRL++I + E +E N+ L L GD+R AIN LQ
Sbjct: 165 EPIQSRCAILRYAKLRDAEILKRLLEICDIEKVEYNDDGLTALIFTSEGDMRQAINNLQ 223
>gi|426201141|gb|EKV51064.1| hypothetical protein AGABI2DRAFT_189375 [Agaricus bisporus var.
bisporus H97]
Length = 341
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 42/239 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPK +++VGN +++L R+G + I+S
Sbjct: 20 LPWVEKYRPKVLDDVVGNSDTIERLKV-------------IARDGNCPH-------LIIS 59
Query: 404 GSPGMGKTTAAK-LVCQMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ L Q+LG +E+NASD RG + IK+
Sbjct: 60 GLPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIEVVR----------TKIKQFAQ 109
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+ + +H ++I+DE D M+ G + + + S C+ + ++ +
Sbjct: 110 KKV---TLPPGRHK--IVILDEADSMTPGAQQALRRTMEIF--SNTTRFCLACNMSNKII 162
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ + + C+ LR+ K R QEI KRL++I E ++ N+ L L GD+R AIN LQ
Sbjct: 163 EPIQSRCAILRYAKLRDQEILKRLLEICEEEDVKYNDDGLTALIFTSEGDMRQAINNLQ 221
>gi|408402785|ref|YP_006860768.1| replication factor C large subunit [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363381|gb|AFU57111.1| replication factor C large subunit [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 412
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 105/237 (44%), Gaps = 40/237 (16%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W+EK+RPKT E+VGN+ WLA W S K +L
Sbjct: 1 MMWSEKHRPKTVQEMVGNEDTRLAALKWLAGW------------------VSGSKPLLLV 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK--ADAKISKGIGGSNANSIKELVSNEA 461
G PG GKTT + + + +E+NASD+R K A+I+ + + AN +
Sbjct: 43 GPPGTGKTTLVHALARQFDYDLVEMNASDARNKDILRARITP-VFQNTANLLGR------ 95
Query: 462 LSANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
K +L +DEVDG+S D GG+ L+ +K +P+I N++ S K+K
Sbjct: 96 -----------KIMLFLDEVDGISGREDTGGLDTLVELMKEPTVPVIMAANEK-SIKIKD 143
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
L C + F + + L + +EG ++ + + GDIR +N Q
Sbjct: 144 LSKVCKTVEFSPVPPRLLLLFLDHVLQSEGAKLGPRDKISIVNNSRGDIRSMLNSAQ 200
>gi|307152955|ref|YP_003888339.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 7822]
gi|306983183|gb|ADN15064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7822]
Length = 682
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Query: 195 KEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAG 254
K E P L G TFVI+GTL SL+R EA+ LI+ GG+VTGSVS KT+YL+ ED AG
Sbjct: 595 KNTSESTPTPLKGKTFVITGTLPSLKRNEAQQLIEEAGGKVTGSVSAKTDYLVVGED-AG 653
Query: 255 AKSTKAKELGTPFLTEDGLFDMIRASKP 282
+K KA++LG L+E+ L MI+ P
Sbjct: 654 SKLAKAQQLGIIQLSEEALLAMIQGKNP 681
>gi|45187984|ref|NP_984207.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|44982768|gb|AAS52031.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|374107422|gb|AEY96330.1| FADR111Wp [Ashbya gossypii FDAG1]
Length = 321
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 132/282 (46%), Gaps = 60/282 (21%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPK ++VGN + V++L R+G + I+S
Sbjct: 10 LPWVEKYRPKLLKDVVGNDETVERLQQ-------------IARDGNMPH-------MIIS 49
Query: 404 GSPGMGKTTAAK-LVCQMLG---FQAI-EVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ L ++LG QA+ E+NASD RG + N IK+
Sbjct: 50 GLPGIGKTTSIHCLAHELLGDAYSQAVLELNASDDRGIDVVR----------NQIKQFAQ 99
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGI---ADLIASIKISKIPIICICNDRYS 515
+ + KH ++I+DE D M++G + + +L ++ ++ C +++
Sbjct: 100 KKC---TLPPGKHK--IIILDEADSMTSGAQQALRRTMELYSNT--TRFAFACNQSNKII 152
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ L+S C+ LR+ K +++ KRL +I AE ++ LE L GD+R AIN
Sbjct: 153 EPLQS---RCAILRYSKLSDEQVLKRLFEIIKAENVQYTNDGLEALIFTAEGDMRQAINN 209
Query: 576 LQYMSLSLSVIKYDD------------IRQRLLSSAKDEDIS 605
LQ +++ D+ I++ LLS+ DE ++
Sbjct: 210 LQSTVAGFTLVNGDNVFKIVDSPHPLVIKKMLLSATLDESLN 251
>gi|401400278|ref|XP_003880754.1| putative replication factor c subunit [Neospora caninum Liverpool]
gi|325115165|emb|CBZ50721.1| putative replication factor c subunit [Neospora caninum Liverpool]
Length = 347
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 119/252 (47%), Gaps = 44/252 (17%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP+T +++VGN Q++++L N L +L+G
Sbjct: 30 WIEKYRPETLDDVVGNDQVMRRLRIIAKEGNMPHL--------------------MLAGP 69
Query: 406 PGMGKTTAAKLVC-QMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
PG GKT++ +C Q+LG + +E+NASD R + I+E V +
Sbjct: 70 PGTGKTSSVLCLCKQLLGSRWRACTLELNASDER--------------TIDVIREKVKHF 115
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK-ISKIPIICICNDRYSQKLK 519
A D ++I+DEVD M+ + + ++ ++ + C + + ++
Sbjct: 116 A-KEKRDLPPGRHKIVILDEVDAMTEAAQQALRRIMEQFSDTTRFALAC---NSSASVIE 171
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L + C+ LRFRK ++ +RL Q+ + E ++V + +E + +GD+R A+N LQ
Sbjct: 172 PLQSRCAILRFRKLDDAQLVRRLRQVCSMEAVQVTDDGMEAIVFCADGDMRSALNNLQST 231
Query: 580 SLSLSVIKYDDI 591
+ ++ +++
Sbjct: 232 VSAFGIVNRENV 243
>gi|164658640|ref|XP_001730445.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
gi|159104341|gb|EDP43231.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
Length = 353
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 117/276 (42%), Gaps = 50/276 (18%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W E+YRPK+ +E+ Q V L L N + + G
Sbjct: 9 WVERYRPKSIDEVASQQHAVNVLRKALTSANLPHM--------------------LFYGP 48
Query: 406 PGMGKT-TAAKLVCQMLGFQ-----AIEVNASDSRGKADAKISKGIGGSNANSIKELVSN 459
PG GKT T L Q+ G + +E+NASD RG + + + IK
Sbjct: 49 PGTGKTSTILALARQLYGPELMRSRVLELNASDERGISVVR----------DKIKSFARA 98
Query: 460 EALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLK 519
+ N D P ++I+DE D M+ +G + ++ + S+I C+ + ++ ++
Sbjct: 99 AVSAPNPDYPSPPYKIVILDEADSMTQDAQGALRRIME--QYSRITRFCLVCNYVTRIIE 156
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ + CS RFR RL+ IA EGL +N + L GD+R +I LQ +
Sbjct: 157 PVASRCSKFRFRPLDVASTEARLLHIAQMEGLRLNPDLVPVLIRSSEGDMRRSITYLQSI 216
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615
+ L+ + D+R D+SP T V +L G
Sbjct: 217 A-RLASARGGDVR----------DMSP-TTVSELAG 240
>gi|395515692|ref|XP_003762034.1| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Sarcophilus harrisii]
Length = 1025
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 128/316 (40%), Gaps = 73/316 (23%)
Query: 322 IERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWN----- 376
+ R + + +++ Q+ Q SL W + + P+ E++ + + L WL W+
Sbjct: 304 VSRARGMEEEEEKENQDSSQHSL-WVDLFTPRHYRELLSDDYTNRCLLKWLKLWDVVVFG 362
Query: 377 ------------EKFLDTGTKRNGKK--------------------QNDASAEKAAILSG 404
E+ G ++G++ QN+ K A+L G
Sbjct: 363 REKVAKKPKLNSEQPSARGPSKHGREPQKWKTKEQIMEEILDAELDQNNRPKFKVALLCG 422
Query: 405 SPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA 464
PG+GKTT A ++ + G+ +E+NASD R K I+ E++
Sbjct: 423 PPGLGKTTLAHVIAKHAGYSVVEMNASDDRSPEVFK----------TRIEAATQMESVLG 472
Query: 465 NMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI-------------------- 504
+K LI+DE+DG + +I + +
Sbjct: 473 ----AKGKPNCLIIDEIDGAPTPSINVLLSIINRKDVGETETTGTAGGGKKRKKEGGLLL 528
Query: 505 -PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELAD 563
PIICICND+Y+ L+ L L+F + + +RL +I+ +G++ + L L +
Sbjct: 529 RPIICICNDQYTPSLRQLKQQAFLLQFPQTLPSRLVQRLNEISLRQGMKADTGTLMMLCE 588
Query: 564 RVNGDIRMAINQLQYM 579
+ DIR IN LQ++
Sbjct: 589 KTENDIRSCINTLQFL 604
>gi|154276822|ref|XP_001539256.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1]
gi|150414329|gb|EDN09694.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1]
Length = 354
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 115/241 (47%), Gaps = 46/241 (19%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP ++IVGN + +++L RNG + I+S
Sbjct: 28 LPWVEKYRPVFLDDIVGNTETIERLKI-------------IARNGNMPH-------VIIS 67
Query: 404 GSPGMGKTTAAKLVC---QMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
G PG+GKTT+ ++C QMLG +E+NASD RG + N IK
Sbjct: 68 GMPGIGKTTS--ILCLARQMLGNSYKEAVLELNASDERGIDVVR----------NRIKGF 115
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQ 516
+ + + +H ++I+DE D M++G + + + I + CN + ++
Sbjct: 116 AQKKV---TLPQGRHK--LVILDEADSMTSGAQQALRRTM-EIYSTTTRFAFACN-QSNK 168
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
++ L + C+ LR+ + +I KRL QI AE ++ +E LE L GD+R AIN L
Sbjct: 169 IIEPLQSRCAILRYARLTDGQILKRLTQICEAEKVKYSEDGLEALIFSAEGDMRQAINNL 228
Query: 577 Q 577
Q
Sbjct: 229 Q 229
>gi|366988087|ref|XP_003673810.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
gi|342299673|emb|CCC67429.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
Length = 321
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 44/247 (17%)
Query: 337 QNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASA 396
Q I L W EKYRP+ ++IVGN++ + +L N +
Sbjct: 3 QKILTLELPWVEKYRPRVLDDIVGNEETILRLKQIAQDGNMPHM---------------- 46
Query: 397 EKAAILSGSPGMGKTTAAK-LVCQMLG----FQAIEVNASDSRGKADAKISKGIGGSNAN 451
I+SG PG+GKTT+ L ++LG +E+NASD RG + N
Sbjct: 47 ----IISGLPGIGKTTSVLCLAHELLGDDYSKAVLELNASDDRGIEVVR----------N 92
Query: 452 SIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKIS-KIPIICIC 510
IK+ ++L + KH ++I+DE D M+AG + + + S + C
Sbjct: 93 QIKQFAQKKSL---LPPGKHK--IIILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ 147
Query: 511 NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570
+++ + L+S C+ LR+ K +++ KRL+QI AE ++ LE + GD+R
Sbjct: 148 SNKIIEPLQS---RCAILRYTKLSDEQVLKRLLQIIKAEDVKYTNDGLEAIIFTAEGDMR 204
Query: 571 MAINQLQ 577
AIN LQ
Sbjct: 205 QAINNLQ 211
>gi|339443493|ref|YP_004709498.1| NAD-dependent DNA ligase [Clostridium sp. SY8519]
gi|338902894|dbj|BAK48396.1| NAD-dependent DNA ligase [Clostridium sp. SY8519]
Length = 667
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 200 GAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTK 259
A D L GLT V++GTL +L R+EA+ LI+ HGGR TGSVSKKT+YLL E AG+K K
Sbjct: 587 AAADELEGLTIVVTGTLPTLGRKEAQQLIEAHGGRCTGSVSKKTDYLLAGE-AAGSKLEK 645
Query: 260 AKELGTPFLTEDGLFDMIR 278
AK LG P + E +MIR
Sbjct: 646 AKSLGVPIINEQEFLEMIR 664
>gi|288560386|ref|YP_003423872.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
gi|288543096|gb|ADC46980.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
Length = 314
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 46/238 (19%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP+T ++IVG + +V+ L +K++D G+ N + +G
Sbjct: 5 WVEKYRPQTLDDIVGQKHIVESL--------KKYVDQGSMPN------------LMFTGP 44
Query: 406 PGMGKTTAA-KLVCQMLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
G+GKTT+A LV +LG +E+NASD+RG + +IK +
Sbjct: 45 AGVGKTTSALALVKAILGDYWRQNFLELNASDARGIETVR----------TNIKNFCRLK 94
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL-K 519
+ A P ++ +DEVD M+ + + + + I CN YS K+
Sbjct: 95 PVGA-------PFRIIFLDEVDNMTKDAQHALRREM-EMYTKTCSFILSCN--YSSKIID 144
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ + C+ RF + +EIA RL IA AEG E E A+E + GD+R ++N LQ
Sbjct: 145 PIQSRCAIFRFAPIKAEEIADRLKYIAEAEGCEYEEKAIETIVLFGEGDMRKSVNMLQ 202
>gi|119719185|ref|YP_919680.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
gi|150415673|sp|A1RWU7.1|RFCS_THEPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|119524305|gb|ABL77677.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
Length = 325
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 158/353 (44%), Gaps = 72/353 (20%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP++ +EIV +++VK+L ++ + N L + +G
Sbjct: 6 WVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHL--------------------LFAGP 45
Query: 406 PGMGKTTAAKLVCQMLGFQA-----IEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
PG GKTTAA + L ++ +E+NASD RG + I+ + +
Sbjct: 46 PGTGKTTAALALAHDLYGESWRDNTLELNASDERG--------------IDVIRSRIKDY 91
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL-K 519
A + + P ++I+DE D M+ GD + I I N Y+ K+ +
Sbjct: 92 ARTLPI--GDVPFKLVILDEADNMT-GDAQQALRRTMELFSRNTRFILIAN--YASKIIE 146
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ + C+ RF+ K + +RL IA EG+ V++ ALE + + GD+R AIN LQ
Sbjct: 147 PIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGITVDDGALEAIWEESQGDLRKAINTLQAA 206
Query: 580 S------------LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKL------FGFNGGK- 620
S +L +K ++R+ + S+ K + A DKL +G +G
Sbjct: 207 SAISRNVTEEVVYAALGRVKPKEVREMIESALKG---NLLEARDKLRLLLYNYGLSGVDI 263
Query: 621 LRMDERIDLS-----MSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAA 668
+R R LS + D L LL+ NYR DE++ ++L+++ A
Sbjct: 264 IRFIHREVLSQKSVRLDDATLAELLVLVGETNYRIVEGSDDEIQLMALLSKLA 316
>gi|225554309|gb|EEH02609.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|240277074|gb|EER40584.1| activator 1 37 kDa subunit [Ajellomyces capsulatus H143]
gi|325095015|gb|EGC48325.1| activator 1 37 kDa subunit [Ajellomyces capsulatus H88]
Length = 354
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 115/241 (47%), Gaps = 46/241 (19%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP ++IVGN + +++L RNG + I+S
Sbjct: 28 LPWVEKYRPVFLDDIVGNTETIERLKI-------------IARNGNMPH-------VIIS 67
Query: 404 GSPGMGKTTAAKLVC---QMLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
G PG+GKTT+ ++C QMLG +E+NASD RG + N IK
Sbjct: 68 GMPGIGKTTS--ILCLARQMLGDSYKEAVLELNASDERGIDVVR----------NRIKGF 115
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQ 516
+ + + +H ++I+DE D M++G + + + I + CN + ++
Sbjct: 116 AQKKV---TLPQGRHK--LVILDEADSMTSGAQQALRRTM-EIYSTTTRFAFACN-QSNK 168
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
++ L + C+ LR+ + +I KRL QI AE ++ +E LE L GD+R AIN L
Sbjct: 169 IIEPLQSRCAILRYARLTDGQILKRLTQICEAEKVKYSEDGLEALIFSAEGDMRQAINNL 228
Query: 577 Q 577
Q
Sbjct: 229 Q 229
>gi|378734379|gb|EHY60838.1| chromosome transmission fidelity protein 18 [Exophiala dermatitidis
NIH/UT8656]
Length = 950
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 113/262 (43%), Gaps = 48/262 (18%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTK------RNGKKQNDASAEKA 399
WTEKYR K E+VG+++ + + WL W+E +K R+ + + +K
Sbjct: 217 WTEKYRAKKFTELVGDERTHRSILRWLKSWDELVFPGSSKPKTLRIRDENELSHQQHKKI 276
Query: 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK--ADAKISKGIGGSNANSIKELV 457
+L+G PG+GKTT A + + G++ +E+NASD R + +I + I+E
Sbjct: 277 LLLTGPPGLGKTTLAHVCAKQAGYEVLEINASDDRSRDVVKGRIKDALATETVRGIQE-- 334
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG------IADLIASIKISK-------- 503
RS P V ++DEVDG++ G I LI +++ +
Sbjct: 335 -----HGKARRSGRPVCV-VVDEVDGVTTGSSSAGGEGGFIKALIDLVQLDQRNSTSATH 388
Query: 504 ----------------IPIICICNDRYSQKLKSL--VNYCSDLRFRKPRKQEIAKRLMQI 545
P+I +CND Y+ L+ L + + RK +++ R+ I
Sbjct: 389 DNQKLRKKKGDRFRMLRPLILVCNDVYAPSLRPLRTSSLAEIIHVRKAPIEKVIARMKTI 448
Query: 546 ANAEGLEVNEIALEELADRVNG 567
E + + A+ L + V G
Sbjct: 449 FEKEHIPCDTDAVRRLCESVWG 470
>gi|425773728|gb|EKV12062.1| DNA replication factor C subunit Rfc4, putative [Penicillium
digitatum PHI26]
gi|425782289|gb|EKV20208.1| DNA replication factor C subunit Rfc4, putative [Penicillium
digitatum Pd1]
Length = 352
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 42/239 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP ++IVGN + V++L ++G + I+S
Sbjct: 28 LPWVEKYRPTFLDDIVGNTETVERLKI-------------IAKDGNMPH-------VIIS 67
Query: 404 GSPGMGKTTAAKLVC-QMLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ + Q+LG +E+NASD RG + N IK
Sbjct: 68 GMPGIGKTTSVLCLARQLLGDAYKEAVLELNASDERGIDVVR----------NRIKGFAQ 117
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+ + + +H ++I+DE D M+AG + + + I S CN + ++ +
Sbjct: 118 KKV---TLPQGRHK--LVILDEADSMTAGAQQALRRTM-EIYSSTTRFAFACN-QSNKII 170
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ L + C+ LR+ + ++ KRLMQI AE +E +E + L GD+R AIN LQ
Sbjct: 171 EPLQSRCAILRYARLTDAQVVKRLMQICEAENVEHSEDGIAALVFSAEGDMRQAINNLQ 229
>gi|148658591|ref|YP_001278796.1| DNA ligase [Roseiflexus sp. RS-1]
gi|166216236|sp|A5V1U3.1|DNLJ_ROSS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|148570701|gb|ABQ92846.1| DNA ligase, NAD-dependent [Roseiflexus sp. RS-1]
Length = 726
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%)
Query: 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKE 262
+ L G TFVI+GTL S+ REEA LI HGG+V+GSVSKKT+YL+ + G K KA+E
Sbjct: 611 NALAGKTFVITGTLPSMSREEASALITAHGGKVSGSVSKKTDYLVIGAEPGGTKFAKAQE 670
Query: 263 LGTPFLTEDGLFDMI 277
LG P + E GL +I
Sbjct: 671 LGIPMIDEAGLLALI 685
>gi|60477744|gb|AAH90779.1| Zgc:110810 [Danio rerio]
gi|182890088|gb|AAI64018.1| Zgc:110810 protein [Danio rerio]
Length = 349
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 114/254 (44%), Gaps = 44/254 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP NEIVGN++ V +L + R G N I++
Sbjct: 31 LPWVEKYRPLKLNEIVGNEETVSRLEVF-------------AREGNVPN-------IIIA 70
Query: 404 GSPGMGKTTAAKLVCQMLGFQA-----IEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG GKTT+ + + L A +E+NAS+ RG + N IK
Sbjct: 71 GPPGTGKTTSILCLARALLGPAMKDAVLELNASNDRGIDVVR----------NKIKMFAQ 120
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI-KISKIPIICICNDRYSQK 517
+ + + +H ++I+DE D M+ G + + + K ++ + C +D+ +
Sbjct: 121 QKV---TLPKGRH--KIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP 175
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
++S C+ LR+ K R ++I RL ++ E L V LE + GD+R A+N LQ
Sbjct: 176 IQS---RCAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQ 232
Query: 578 YMSLSLSVIKYDDI 591
+ I +++
Sbjct: 233 STNSGFGYINSENV 246
>gi|348041239|ref|NP_001013344.2| replication factor C subunit 2 [Danio rerio]
Length = 353
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 114/254 (44%), Gaps = 44/254 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP NEIVGN++ V +L + R G N I++
Sbjct: 35 LPWVEKYRPLKLNEIVGNEETVSRLEVF-------------AREGNVPN-------IIIA 74
Query: 404 GSPGMGKTTAAKLVCQMLGFQA-----IEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG GKTT+ + + L A +E+NAS+ RG + N IK
Sbjct: 75 GPPGTGKTTSILCLARALLGPAMKDAVLELNASNDRGIDVVR----------NKIKMFAQ 124
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI-KISKIPIICICNDRYSQK 517
+ + + +H ++I+DE D M+ G + + + K ++ + C +D+ +
Sbjct: 125 QKV---TLPKGRH--KIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP 179
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
++S C+ LR+ K R ++I RL ++ E L V LE + GD+R A+N LQ
Sbjct: 180 IQS---RCAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQ 236
Query: 578 YMSLSLSVIKYDDI 591
+ I +++
Sbjct: 237 STNSGFGYINSENV 250
>gi|358340408|dbj|GAA33934.2| chromosome transmission fidelity protein 18 [Clonorchis sinensis]
Length = 1146
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 108/243 (44%), Gaps = 36/243 (14%)
Query: 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
+ +L+G PG+GKTT A L+ Q G+Q IE+NASD R + K S + S+
Sbjct: 546 RVVLLAGCPGLGKTTLAHLLAQHAGYQVIEMNASDDRTVSVFKDQLTAIVSTSTSL---- 601
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDG--------MSAGDRGGIADLIASIK--------- 500
N + LI+DE+DG ++ R + + A +
Sbjct: 602 -NTTAPDGSGTGCYKPCCLILDEIDGAVPAAVELLATAARAVLPPVGAERRARGKRNTTP 660
Query: 501 -ISKIPIICICNDRYSQKLKSLVN---YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEI 556
+ + P+ICICND +S ++ L C +R + RL I EGL V ++
Sbjct: 661 LVLRRPVICICNDLFSPAVRPLRAPGVPCLVIRLPNVDLGRLITRLETICQKEGLMVEKM 720
Query: 557 ALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGF 616
L +LA+ DIR +N LQ++ L ++ + R LS+ ED+ L GF
Sbjct: 721 LLTQLAEIAERDIRACLNALQFLRAHLGS-EFGNKANRNLST---EDLC------TLIGF 770
Query: 617 NGG 619
GG
Sbjct: 771 GGG 773
>gi|254578476|ref|XP_002495224.1| ZYRO0B06248p [Zygosaccharomyces rouxii]
gi|238938114|emb|CAR26291.1| ZYRO0B06248p [Zygosaccharomyces rouxii]
Length = 321
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 131/284 (46%), Gaps = 60/284 (21%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPK ++ VGN++ + +L N L I+S
Sbjct: 10 LPWVEKYRPKQLSDTVGNEETIHRLQQIAKDGNMPHL--------------------IIS 49
Query: 404 GSPGMGKTTAAK-LVCQMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ L ++LG +E+NASD RG + N IK+
Sbjct: 50 GLPGIGKTTSIHCLAHELLGDSYSQGVLELNASDDRGIDVVR----------NQIKQFAQ 99
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGI---ADLIASIKISKIPIICICNDRYS 515
+ +++ KH ++I+DE D M+AG + + +L ++ ++ C +++
Sbjct: 100 KKC---HLEPGKHK--IIILDEADSMTAGAQQALRRTMELYSNT--TRFAFACNQSNKII 152
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ L+S C+ LR+ K +++ KRL++I AE ++ LE L GD+R A+N
Sbjct: 153 EPLQS---RCAILRYSKLSDEQVLKRLLEIIKAENVQYTNDGLEALIFTAEGDMRQAVNN 209
Query: 576 LQYMSLSLSVIKYDD------------IRQRLLSSAKDEDISPF 607
LQ S++ ++ +++ LL+ DE I+ F
Sbjct: 210 LQSTVAGHSLVSGENVFKIVDSPHPLVVKKMLLAPTLDESIALF 253
>gi|327401750|ref|YP_004342589.1| replication factor C small subunit [Archaeoglobus veneficus SNP6]
gi|327317258|gb|AEA47874.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6]
Length = 322
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 147/331 (44%), Gaps = 51/331 (15%)
Query: 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSG 404
W EKYRP+T E+VG ++++++L ++ N L + +G
Sbjct: 7 IWVEKYRPRTLKEVVGQEEVIQRLMGYVERKNIPHL--------------------LFAG 46
Query: 405 SPGMGKTTAAKLVCQMLGFQ-----AIEVNASDSRGKADAKISKGIGGSNANSIKELVSN 459
PG GKT +A + + L + IE+NASD RG + + IKE
Sbjct: 47 PPGTGKTASAIALARDLFGENWRDNFIEMNASDERGIDVVR----------HKIKEFART 96
Query: 460 EALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLK 519
+ P ++ +DE D ++ + + + SKI + + S+ ++
Sbjct: 97 APIG------DAPFKIIFLDEADALTPDAQAALRRTMEMY--SKICRFILSCNYVSRIIE 148
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ + C+ +FR + + KRL++I EG+++ E LE L NGD R AIN LQ
Sbjct: 149 PIQSRCAVFKFRPVPPEAMRKRLLEICENEGVKITEDGLEALIYVSNGDFRKAINALQGA 208
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDE-RIDLSMSDPDLVP 638
+ V+ + I Q + ++A+ E+++ F + +D+ I+ MS D+V
Sbjct: 209 AALGKVVDAEAIYQ-ITATARPEELANLLETALEGKFMEARSILDKLMIEYGMSGEDVVS 267
Query: 639 LLIQENYINYRPSSAGRDEVKRLSLIARAAE 669
L +E S+G DE ++ LI + E
Sbjct: 268 QLFREIL------SSGMDEKMKVLLIDKLGE 292
>gi|388582885|gb|EIM23188.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 132/287 (45%), Gaps = 55/287 (19%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP+ ++IVGNQ VK+L ++G + I+SG+
Sbjct: 11 WVEKYRPRVLSDIVGNQDTVKRLEV-------------IAQDGNMPH-------MIMSGT 50
Query: 406 PGMGKTTAA-KLVCQMLG---FQ--AIEVNASDSRGKADAKISKGIGGSNANSIKELVSN 459
PG+GKTTA L +LG F+ +E+NASD RG + N IK +
Sbjct: 51 PGIGKTTAVLALAHTLLGPDVFKEAVLELNASDERGIDVVR----------NRIKSF-AQ 99
Query: 460 EALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLK 519
+ ++ R K ++I+DE D M++G + + + I + CN + ++ ++
Sbjct: 100 KKIALPPGRHK----IVILDEADSMTSGAQQALRRTM-EIYSNTTRFAFACN-QSNKIIE 153
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
+ + C+ LRF K R E+ +RL QIA E +V + E L GD+R A+N LQ
Sbjct: 154 PIQSRCAILRFSKLRDIELLQRLRQIAEKENADVTDEGYEALIFTSEGDMRQAVNNLQST 213
Query: 580 SLSLSVIKYDDI-----------RQRLLSSAKDEDIS-PFTAVDKLF 614
L ++ D + Q LL S DI + +D+L+
Sbjct: 214 HTGLGLVTPDAVFKVCDQPHPLLVQNLLESCHKADIEDALSKLDELW 260
>gi|363540406|ref|YP_004894549.1| mg498 gene product [Megavirus chiliensis]
gi|350611571|gb|AEQ33015.1| putative replication factor C small subunit [Megavirus chiliensis]
gi|371943815|gb|AEX61643.1| putative replication factor C small subunit [Megavirus courdo7]
gi|425701391|gb|AFX92553.1| putative replication factor C small subunit [Megavirus courdo11]
Length = 325
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 117/244 (47%), Gaps = 44/244 (18%)
Query: 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK 398
I ++S+ W EKYRP T +EI+ + + KQ++ +L + L
Sbjct: 4 IMETSIPWIEKYRPSTIDEIIFDVNIRKQINIFLEDKDNVHL------------------ 45
Query: 399 AAILSGSPGMGKTTAAKLVCQ-MLGFQA----IEVNASDSRGKADAKISKGIGGSNANSI 453
I +G PG+GKT+ A+ + + MLG +E+NA++ RG S +N I
Sbjct: 46 --IFTGPPGIGKTSTARCIAKTMLGNHMNTGYLEINAAEDRG----------VRSMSNRI 93
Query: 454 KELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDR 513
+ + NM + ++++DE D M++ + I ++I + I CND
Sbjct: 94 PPF-CKKVVDFNMSK------IILLDEADIMTSKCQFDINNMIKEFG-KRTKFIFTCNDS 145
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
++ ++ L + C LRF+K Q+I L +I + E +E ++ LE + GD+R +I
Sbjct: 146 -TKIIEDLQSVCRILRFKKLTNQQICSYLSKICDKENVEFDKPGLETICYISYGDMRKSI 204
Query: 574 NQLQ 577
N LQ
Sbjct: 205 NDLQ 208
>gi|403411420|emb|CCL98120.1| predicted protein [Fibroporia radiculosa]
Length = 361
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 125/270 (46%), Gaps = 32/270 (11%)
Query: 330 SPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGK 389
+PA N+ L W EKYRP ++IVGN + +++L N + G
Sbjct: 10 APANGNATNLPYE-LPWVEKYRPHALDDIVGNTETIERLKVIAKDGNCPHIIISV---GP 65
Query: 390 KQNDASAEKAAILSGSPGMGKTTAAK-LVCQMLGFQ----AIEVNASDSRGKADAKISKG 444
++ A A G PG+GKTT+ L Q+LG +E+NASD RG +
Sbjct: 66 PKHPFFARLMARPKGMPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVR---- 121
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGI---ADLIASIKI 501
N IK + + +H ++I+DE D M+ G + + ++ A+
Sbjct: 122 ------NKIKAFAQKKV---TLPPGRH--KIVILDEADSMTPGAQQALRRTMEIYANT-- 168
Query: 502 SKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEEL 561
++ + C +++ + ++S C+ LR+ K R EI KRL++I E ++ N+ L L
Sbjct: 169 TRFALACNMSNKIIEPIQS---RCAILRYAKLRDTEILKRLLEICEMEKVQYNDDGLTAL 225
Query: 562 ADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
GD+R AIN LQ + S + D++
Sbjct: 226 IFTSEGDMRQAINNLQSTNSGFSFVSGDNV 255
>gi|15224020|ref|NP_177885.1| P-loop containing nucleoside triphosphate hydrolase-like protein
[Arabidopsis thaliana]
gi|12323399|gb|AAG51680.1|AC010704_24 hypothetical protein; 83388-78455 [Arabidopsis thaliana]
gi|332197880|gb|AEE36001.1| P-loop containing nucleoside triphosphate hydrolase-like protein
[Arabidopsis thaliana]
Length = 1151
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 123/270 (45%), Gaps = 39/270 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK-------FLDTGTKRNGKKQNDA---- 394
W +KY+P++ +E+ GN + VK ++ WL W E+ FL + ++ +
Sbjct: 313 WVDKYQPRSASEVCGNTESVKVMNEWLRQWYERGFQPNKDFLSSDEDKSQDADYNCSESD 372
Query: 395 ----------SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR---------G 435
S + ++ G G GK+ A + GF+ +E N S+ R G
Sbjct: 373 SDSEKSGAEDSQKNVLLIVGPAGSGKSAAIHACAKEQGFKILESNTSECRSGTVVRQKFG 432
Query: 436 KA--DAKISKGI-----GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD 488
+A +S+ + ++ N ++++V + + + K +++ ++VD A D
Sbjct: 433 EALKSYSLSRSLDPLFNSCTDGNGVEDVVEVMPVLHIQNDGANLKPLILFEDVDICFAED 492
Query: 489 RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
RG ++ + +K P++ ND+ +L ++ F P K+E+ L + A
Sbjct: 493 RGLVSAIQQIAVKAKGPVVLTANDKNHGLPDNLERI--EIYFSLPSKEELFNHLSLVCAA 550
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQY 578
E ++VN +LEE+ GDIR AI QLQ+
Sbjct: 551 EEVKVNHGSLEEMTTFCGGDIRKAIMQLQF 580
>gi|399218566|emb|CCF75453.1| unnamed protein product [Babesia microti strain RI]
Length = 1217
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 125/275 (45%), Gaps = 44/275 (16%)
Query: 319 KAPIERMKTVASPAKRKGQNI----QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAH 374
K IE + + KRK + + Q L W +KY+P ++++ ++++ ++ WL
Sbjct: 544 KQLIESDELIFETKKRKVEEVVTECAQDQL-WVDKYKPLYFSDLLSDEKVNREALCWLNS 602
Query: 375 WNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434
W +R G+ + IL G PG+GK+T ++ + + +E+NASD R
Sbjct: 603 WKNL-----EERGGEP-------RILILGGPPGVGKSTLVHVIARHSNYNVVEINASDDR 650
Query: 435 GKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIAD 494
K D + + + NS + P L ++E+DG+++G+ I+
Sbjct: 651 TK-DRLMPMILSITTTNS---------------TTGQPNLCL-LEEIDGLASGEEQVISA 693
Query: 495 LIASI---------KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQI 545
L++ + K+ + PIIC CND Y++ L L L P + + +RL I
Sbjct: 694 LVSLLEKRTKEGGYKVKR-PIICTCNDLYNRNLIKLRQIAKILFVYPPDELTLLQRLQSI 752
Query: 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
++E + ++ + L L + DIR I L Y +
Sbjct: 753 LSSESIVMDPLMLSNLINVYREDIRSCILALDYYT 787
>gi|302770687|ref|XP_002968762.1| hypothetical protein SELMODRAFT_90486 [Selaginella moellendorffii]
gi|300163267|gb|EFJ29878.1| hypothetical protein SELMODRAFT_90486 [Selaginella moellendorffii]
Length = 326
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 113/243 (46%), Gaps = 42/243 (17%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKA 399
++ L W EKYRP+ ++VGNQ + +L R+G N
Sbjct: 5 EEYDLPWVEKYRPQKLADVVGNQDAIGRLQV-------------IARDGNMPN------- 44
Query: 400 AILSGSPGMGKTTA-AKLVCQMLGFQA----IEVNASDSRGKADAKISKGIGGSNANSIK 454
I SG PG+GKTT + +MLG A +E+NASD RG + N IK
Sbjct: 45 LIFSGPPGIGKTTCIMAMAHEMLGALAKEAVLELNASDDRGIDVVR----------NKIK 94
Query: 455 ELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY 514
+ + R +H V+I+DE D M++G + + + I S CN
Sbjct: 95 MFAQKKL---TLPRGRH--KVVILDEADSMTSGAQQALRRTM-EIYSSSTRFGLACNLS- 147
Query: 515 SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAIN 574
SQ ++ + + C+ +RF + +Q+I RL+++A AE + LE + +GD+R A+N
Sbjct: 148 SQIIEPIQSRCAIVRFTRLSEQDILARLLKVAAAEKVPYVPEGLEAVVFTADGDMRQALN 207
Query: 575 QLQ 577
LQ
Sbjct: 208 NLQ 210
>gi|301612800|ref|XP_002935905.1| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Xenopus (Silurana) tropicalis]
Length = 982
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 119/298 (39%), Gaps = 66/298 (22%)
Query: 336 GQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKK----- 390
G+N S W + + P+ E++ + + L WL W+ G +R KK
Sbjct: 274 GENESSSHSLWVDCFTPRHYTELLSDDYTNRCLLKWLKLWDTVVF--GKERVVKKPKANV 331
Query: 391 --------------------------------QNDASAEKAAILSGSPGMGKTTAAKLVC 418
Q++ K A+L G PG+GKTT A ++
Sbjct: 332 DPRANFKNQKEQQSKFKSKAQITEEILEAELDQHNRPKNKVALLCGPPGLGKTTLAHVIA 391
Query: 419 QMLGFQAIEVNASDSRG--------KADAKISKGIGGS---NANSIKELVSNEALSANMD 467
+ G+ +E+NASD R +A ++ +G N I E+ +S NM
Sbjct: 392 RHAGYNVVEMNASDDRSPEIFKTRIEAATQMKSVLGVDERPNCLIIDEIDGAPTVSINM- 450
Query: 468 RSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI------PIICICNDRYSQKLKSL 521
++ ++ A + G D+ K K PIICICND+Y L+ L
Sbjct: 451 ---------LLSLINRKDAKETEGGTDVTTGKKKKKEGGLLLRPIICICNDQYVPSLRLL 501
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L F + + +RL +I +G++ + AL L ++ DIR IN LQ++
Sbjct: 502 RQQAFMLNFPQTLPSRLVQRLYEITIKQGMKADTGALMALCEKTENDIRSCINTLQFL 559
>gi|71027617|ref|XP_763452.1| replication factor C subunit 4 [Theileria parva strain Muguga]
gi|68350405|gb|EAN31169.1| replication factor C subunit 4, putative [Theileria parva]
Length = 324
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 50/255 (19%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP T ++I+GN ++ +L +F+ + G N +L G
Sbjct: 8 WIEKYRPTTLDDIIGNPEITTRL---------QFI----AKEGNMPN-------LLLCGP 47
Query: 406 PGMGKTTAAKLVC-QMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
PG GKTT+ + ++LG IE+NASD RG + ++E + N
Sbjct: 48 PGTGKTTSVLCLARELLGTHFKSAVIELNASDDRG--------------VDVVRESIKNF 93
Query: 461 AL-SANMDRSKHPKTVLIMDEVDGMSAGDRGG---IADLIASIKISKIPIICICNDRYSQ 516
A S + +KH ++I+DEVD M+ + I +L +S ++ + C +++ +
Sbjct: 94 AKKSLVLPPNKHK--IVILDEVDSMTEPAQQALRRIMELYSST--TRFALACNQSNKIIE 149
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
++S C+ +R+ K + ++I KRL+ I + E L + +E L +GD+R A+N L
Sbjct: 150 PIQS---RCAVIRYSKLQDEQILKRLVTICDMENLTYTDEGMEALLFSADGDLRRAVNNL 206
Query: 577 QYMSLSLSVIKYDDI 591
Q +S V+ D++
Sbjct: 207 QIVSAGFKVVTKDNV 221
>gi|171692201|ref|XP_001911025.1| hypothetical protein [Podospora anserina S mat+]
gi|170946049|emb|CAP72850.1| unnamed protein product [Podospora anserina S mat+]
Length = 357
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 121/253 (47%), Gaps = 42/253 (16%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP +++VGN + +++L R+G + I+S
Sbjct: 35 LPWVEKYRPVFLDDVVGNTETIERLKI-------------IARDGNMPH-------VIIS 74
Query: 404 GSPGMGKTTAAKLVC-QMLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ + Q+LG +E+NASD RG D + + I G +
Sbjct: 75 GMPGIGKTTSVLCLARQLLGDAYKEAVLELNASDERG-IDV-VRQRIKGFAQKKV----- 127
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+ + +H ++I+DE D M++G + + + I + CN + ++ +
Sbjct: 128 ------TLPQGRHK--LVILDEADSMTSGAQQALRRTM-EIYSNTTRFAFACN-QSNKII 177
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ L + C+ LR+ K +++ KRL+QI +AEG++ +E L L GD+R AIN LQ
Sbjct: 178 EPLQSRCAILRYAKLTDEQVVKRLLQIIDAEGVKFSEDGLAALVFSAEGDMRQAINNLQS 237
Query: 579 MSLSLSVIKYDDI 591
+ D++
Sbjct: 238 TWAGFGFVSGDNV 250
>gi|390604618|gb|EIN14009.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 342
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 112/239 (46%), Gaps = 42/239 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPK +++VGN + +++L R+G + I+S
Sbjct: 21 LPWVEKYRPKVLDDVVGNIETIERLKV-------------IARDGNCPH-------IIIS 60
Query: 404 GSPGMGKTTAAK-LVCQMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ L Q+LG +E+NASD RG + N IK
Sbjct: 61 GMPGIGKTTSIHCLAHQLLGNAYKEGVLELNASDERGIEVVR----------NKIKTFAQ 110
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+ + +H ++I+DE D M+AG + + + + C+ + ++ +
Sbjct: 111 KKV---TLPPGRHK--IVILDEADSMTAGAQQALRRTMEIY--ANTTRFCLACNMSNKII 163
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ + + C+ LR+ K R E+ KRL++I E ++ N+ L L GD+R AIN LQ
Sbjct: 164 EPIQSRCAILRYSKLRDTELLKRLLEICELEKVKYNDDGLTALIFTSEGDMRQAINNLQ 222
>gi|110590957|pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
gi|110590958|pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
gi|110590959|pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
gi|110590960|pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 111/253 (43%), Gaps = 43/253 (16%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP+T +E+VG +++++L ++ N L + SG
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHL--------------------LFSGP 46
Query: 406 PGMGKT-TAAKLVCQMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
PG GKT TA L + G IE+NASD RG + + IKE
Sbjct: 47 PGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR----------HKIKEFARTA 96
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
+ P ++ +DE D ++A + + + S I CN S+ ++
Sbjct: 97 PIGG------APFKIIFLDEADALTADAQAALRRTMEMYSKS-CRFILSCN-YVSRIIEP 148
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ + C+ RF+ K+ + KRL++I EG+++ E LE L GD R AIN LQ +
Sbjct: 149 IQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAA 208
Query: 581 LSLSVIKYDDIRQ 593
V+ D I Q
Sbjct: 209 AIGEVVDADTIYQ 221
>gi|448825462|ref|YP_007418393.1| putative replication factor C small subunit [Megavirus lba]
gi|444236647|gb|AGD92417.1| putative replication factor C small subunit [Megavirus lba]
Length = 237
Score = 83.2 bits (204), Expect = 5e-13, Method: Composition-based stats.
Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 44/253 (17%)
Query: 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK 398
I ++S+ W EKYRP T +EI+ + + KQ++ +L + L
Sbjct: 4 IMETSIPWIEKYRPSTIDEIIFDVNIRKQINIFLEDKDNVHL------------------ 45
Query: 399 AAILSGSPGMGKTTAAKLVCQ-MLGFQA----IEVNASDSRGKADAKISKGIGGSNANSI 453
I +G PG+GKT+ A+ + + MLG +E+NA++ RG S +N I
Sbjct: 46 --IFTGPPGIGKTSTARCIAKTMLGNHMNTGYLEINAAEDRGVR----------SMSNRI 93
Query: 454 KELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDR 513
+ + NM + ++++DE D M++ + I ++I + I CND
Sbjct: 94 PPFC-KKVVDFNMSK------IILLDEADIMTSKCQFDINNMIKEFG-KRTKFIFTCNDS 145
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
++ ++ L + C LRF+K Q+I L +I + E +E ++ LE + GD+R +I
Sbjct: 146 -TKIIEDLQSVCRILRFKKLTNQQICSYLSKICDKENVEFDKPGLETICYISYGDMRKSI 204
Query: 574 NQLQYMSLSLSVI 586
N LQ + + I
Sbjct: 205 NDLQKTAFTYQKI 217
>gi|354545639|emb|CCE42366.1| hypothetical protein CPAR2_200090 [Candida parapsilosis]
Length = 320
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 118/240 (49%), Gaps = 43/240 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP ++IVGN++ +++L + ++G N I+S
Sbjct: 7 LPWVEKYRPHVLDDIVGNEETIERLKIIV-------------QDGNMPN-------MIIS 46
Query: 404 GSPGMGKTTAAK-LVCQMLG----FQA-IEVNASDSRGKADAKISKGIGGSNANSIKELV 457
G PG+GKTT+ L ++LG QA +E+NASD RG + N IK+
Sbjct: 47 GLPGIGKTTSVHCLAYELLGKEHYHQATLELNASDDRGIDVVR----------NKIKQFA 96
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQK 517
+ +S R+K ++I+DE D M+ G + + + I + CN + S+
Sbjct: 97 QTK-ISLPPGRTK----IIILDEADSMTPGAQQALRRTM-EIYSNTTRFAFACN-QSSKI 149
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
++ L + C+ LR+ K +E+ KRL+ I +E ++ N L+ L GD+R AIN LQ
Sbjct: 150 IEPLQSRCAILRYNKLSDEEVLKRLLDIIKSENVQYNNEGLQALIFSAEGDMRQAINNLQ 209
>gi|410898978|ref|XP_003962974.1| PREDICTED: replication factor C subunit 2-like [Takifugu rubripes]
Length = 350
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 117/256 (45%), Gaps = 48/256 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP NE+VGN++ V +L + R G N I++
Sbjct: 32 LPWVEKYRPLKLNEVVGNEETVSRLEVF-------------AREGNVPN-------IIIA 71
Query: 404 GSPGMGKTTAAKLVC---QMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
G PG GKTT+ ++C +LG +E+NAS+ RG + N IK
Sbjct: 72 GPPGTGKTTS--ILCLARALLGASTKDAVLELNASNDRGIDVVR----------NKIKMF 119
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI-KISKIPIICICNDRYS 515
+ + R +H ++I+DE D M+ G + + ++ K ++ + C +D+
Sbjct: 120 AQQKV---TLPRGRH--KIIILDEADSMTDGAQQALRRIMEIYSKTTRFALACNASDKII 174
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ ++S C+ LR+ K +I RL ++ E L V++ LE + GD+R A+N
Sbjct: 175 EPIQS---RCAVLRYSKLTDGQILARLQEVVEKEALSVSDDGLEAVIFTAQGDMRQALNN 231
Query: 576 LQYMSLSLSVIKYDDI 591
LQ + + +++
Sbjct: 232 LQSTNAGFGFVNSENV 247
>gi|156938086|ref|YP_001435882.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
gi|156567070|gb|ABU82475.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
Length = 329
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 112/243 (46%), Gaps = 51/243 (20%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPK+ +EIV + +V++L ++ N + + +
Sbjct: 7 LLWAEKYRPKSLDEIVDQEDIVRRLKKFVEEKNVPHM--------------------LFA 46
Query: 404 GSPGMGKTTAAKLVCQMLGFQ-----AIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG GKTTAA + L + +E+NASD RG + I+ V
Sbjct: 47 GPPGTGKTTAALALAHDLYGEKYRQYILELNASDERG--------------IDVIRTKVK 92
Query: 459 NEALSANMDRSKHPKTV----LIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY 514
A RS+ P TV +I+DE D M+A + + L+ + + I + N
Sbjct: 93 EFA------RSRTPPTVPFKLVILDEADNMTADAQQALRRLM-EMYSTTTRFILLANFP- 144
Query: 515 SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAIN 574
S+ ++ + + C RFR K ++ +RL I EG++ E ALEE+ + GD+R AIN
Sbjct: 145 SKIIEPVQSRCVYFRFRPLPKDKVIERLKYICQKEGVQCEEDALEEIYNISEGDMRKAIN 204
Query: 575 QLQ 577
LQ
Sbjct: 205 ILQ 207
>gi|367013632|ref|XP_003681316.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
gi|359748976|emb|CCE92105.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
Length = 322
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 48/242 (19%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP+ +IVGN++ V++L E+ G + I+S
Sbjct: 11 LPWVEKYRPEKLKDIVGNEETVERL--------EQIAKDGNMPH------------MIIS 50
Query: 404 GSPGMGKTTAAK-LVCQMLG---FQAI-EVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ L ++LG QA+ E+NASD RG + N IK
Sbjct: 51 GLPGIGKTTSVHCLAHELLGKSYSQAVLELNASDDRGIDVVR----------NQIKHFAQ 100
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGI---ADLIASIKISKIPIICICNDRYS 515
+ ++ KH ++I+DE D M+AG + + +L ++ ++ C +++
Sbjct: 101 KKC---HLPPGKHK--IIILDEADSMTAGAQQALRRTMELYSNT--TRFAFACNQSNKII 153
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ L+S C+ LR+ K +++ KRLM+I AE + LE + GD+R AIN
Sbjct: 154 EPLQS---RCAILRYSKLSDEQVLKRLMEIIKAENVSFTNDGLEAIIFTAEGDMRQAINN 210
Query: 576 LQ 577
LQ
Sbjct: 211 LQ 212
>gi|68473223|ref|XP_719417.1| hypothetical protein CaO19.7658 [Candida albicans SC5314]
gi|46441233|gb|EAL00532.1| hypothetical protein CaO19.7658 [Candida albicans SC5314]
gi|238880430|gb|EEQ44068.1| activator 1 37 kDa subunit [Candida albicans WO-1]
Length = 323
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 134/294 (45%), Gaps = 61/294 (20%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPK +IVGN++ V++L + ++G N I+S
Sbjct: 9 LPWVEKYRPKKLEDIVGNEETVERLKLIV-------------QDGNMPN-------MIIS 48
Query: 404 GSPGMGKTTAAK-LVCQMLG----FQA-IEVNASDSRGKADAKISKGIGGSNANSIKELV 457
G PG+GKTT+ L ++LG QA +E+NASD RG + N IK+
Sbjct: 49 GLPGIGKTTSIHCLAYELLGDEHYHQATMELNASDDRGIDVVR----------NKIKQFA 98
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQK 517
+ +S R K ++I+DE D M+ G + + I I + CN S+
Sbjct: 99 QTK-ISLPPGRQK----IIILDEADSMTPGAQQALRRTI-EIYSNTTRFAFACNQS-SKI 151
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
++ L + C+ LR+ + +E+ RL++I E ++ N L+ L GD+R AIN LQ
Sbjct: 152 IEPLQSRCAILRYNRLSDEEVLARLLEIIKMEDVKYNTEGLQALIFTAEGDMRQAINNLQ 211
Query: 578 YMSL------SLSVIKYDD------IRQRLLSSAKDEDISPFTAVDKLFGFNGG 619
++V K D I+ LLS KD+DI DK G G
Sbjct: 212 STVAGFGFVNDVNVFKIVDQPHPLVIQSILLSCLKDKDI------DKALGLLDG 259
>gi|148228726|ref|NP_001084621.1| chromosome transmission fidelity protein 18 homolog [Xenopus
laevis]
gi|82237184|sp|Q6NU40.1|CTF18_XENLA RecName: Full=Chromosome transmission fidelity protein 18 homolog
gi|46249842|gb|AAH68761.1| Chtf18 protein [Xenopus laevis]
Length = 1000
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 98/237 (41%), Gaps = 58/237 (24%)
Query: 373 AHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432
A E+ L+ + + +N K ++L G PG+GKTT A ++ + G+ +E+NASD
Sbjct: 370 AQITEEILEAELDHHNRPKN-----KVSLLCGPPGLGKTTLAHVIARHAGYNVVEMNASD 424
Query: 433 SRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL---------IMDEVDG 483
R S EA ++ + K+VL I+DE+DG
Sbjct: 425 DR-----------------------SPEAFRTRIEAATQMKSVLGVDERPNCLIIDEIDG 461
Query: 484 MSAGDRGGIADLI---------------------ASIKISKIPIICICNDRYSQKLKSLV 522
+ L+ + PIICICND+Y L+ L
Sbjct: 462 APTVSINMLLSLVNRKDAKEAEGGTEATTGKKKKKEGGLLLRPIICICNDQYVPSLRQLR 521
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L F + + +RL +IA +G++ + AL L ++ DIR IN LQ++
Sbjct: 522 QQAFMLNFPQTMPSRLVQRLYEIAVKQGMKADTGALMALCEKTENDIRSCINTLQFL 578
>gi|213513822|ref|NP_001134786.1| replication factor C subunit 2 [Salmo salar]
gi|209735998|gb|ACI68868.1| Replication factor C subunit 2 [Salmo salar]
Length = 353
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 120/264 (45%), Gaps = 47/264 (17%)
Query: 323 ERMKTVASPAKRKGQNIQQSS---LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKF 379
E+++T P K + SS L W EKYRP NEIVGN++ V +L +
Sbjct: 11 EQIQTEVQPKKDEAPAKLSSSGYELPWVEKYRPLKLNEIVGNEETVSRLEVF-------- 62
Query: 380 LDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA-----IEVNASDSR 434
R G N I++G PG GKTT+ + + L A +E+NAS+ R
Sbjct: 63 -----AREGNVPN-------IIIAGPPGTGKTTSILCLARALLGPAMKDAVLELNASNDR 110
Query: 435 GKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIAD 494
G + N IK + + + +H ++I+DE D M+ G + +
Sbjct: 111 GIDVVR----------NKIKMFAQQKV---TLPKGRH--KIIILDEADSMTDGAQQALRR 155
Query: 495 LIASI-KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEV 553
+ K ++ + C +D+ + ++S C+ LR+ K R ++I RL+++ E L
Sbjct: 156 TMEIYSKTTRFALACNASDKIIEPIQS---RCAVLRYTKLRDEQIMMRLLEVVERENLVT 212
Query: 554 NEIALEELADRVNGDIRMAINQLQ 577
+ LE + GD+R A+N LQ
Sbjct: 213 SNDGLEAIIFTAQGDMRQALNNLQ 236
>gi|50290299|ref|XP_447581.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526891|emb|CAG60518.1| unnamed protein product [Candida glabrata]
Length = 322
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 113/240 (47%), Gaps = 44/240 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP +IVGN++ V++L A N + I+S
Sbjct: 10 LPWVEKYRPHLLKDIVGNEETVERLQQIAADGNMPHM--------------------IIS 49
Query: 404 GSPGMGKTTAAK-LVCQMLG---FQAI-EVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ L +MLG QA+ E+NASD RG + N IK
Sbjct: 50 GLPGIGKTTSIHCLAHEMLGESYSQAVLELNASDDRGIDVVR----------NQIKHFAQ 99
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKIS-KIPIICICNDRYSQK 517
+ ++ KH ++I+DE D M+AG + + + S + C +++ +
Sbjct: 100 KKC---HLPPGKHK--IIILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEP 154
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
L+S C+ LR+ K +++ KRL++I AE ++ LE + GD+R AIN LQ
Sbjct: 155 LQS---RCAILRYSKLSDEQVLKRLLEIIKAEDVQYTNDGLEAIIFTAEGDMRQAINNLQ 211
>gi|402219931|gb|EJU00004.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 343
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 44/240 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP+ +++VGN + +L R+G + I+S
Sbjct: 22 MPWVEKYRPRVLDDVVGNTDTIDRLKV-------------IARDGNCPH-------IIIS 61
Query: 404 GSPGMGKTTAAKLVCQMLGFQA-----IEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ + L A +E+NASD RG + N IK
Sbjct: 62 GMPGIGKTTSIHCLAHALLGDAYKEGVLELNASDERGIDVVR----------NKIKTFAQ 111
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI-KISKIPIICICNDRYSQK 517
+ + +H ++I+DE D M+AG + + + ++ + C +++ +
Sbjct: 112 KKV---TLPPGRHK--IIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEP 166
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
++S C+ LR+ K R QE+ KRL++I AE ++ N+ L L GD+R AIN +Q
Sbjct: 167 IQS---RCAILRYSKLRDQEVLKRLLEICEAEKVKYNDEGLTALIFTAEGDMRQAINNIQ 223
>gi|115655395|ref|XP_790650.2| PREDICTED: replication factor C subunit 2-like [Strongylocentrotus
purpuratus]
Length = 352
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 48/242 (19%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP + +++VGN++ V +L + R G N I++
Sbjct: 33 MPWVEKYRPTSLSDVVGNEETVSRLEVF-------------SREGNVPN-------VIIA 72
Query: 404 GSPGMGKTTAAKLVC---QMLG--FQ--AIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
G PG GKTT+ ++C MLG F+ +E+NAS+ RG + N IK
Sbjct: 73 GPPGTGKTTS--ILCLARTMLGASFKDAVLEMNASNERGIDVVR----------NKIKMF 120
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI-KISKIPIICICNDRYS 515
+ + + +H ++I+DE D M+ + + + K ++ + C +D+
Sbjct: 121 AQKKV---TLPKGRHK--IIILDEADSMTGAAQQAMRRTMEVFSKTTRFALACNASDKII 175
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ ++S C+ LR+ + +I KRL++I AE ++ E LE + GD+R AIN
Sbjct: 176 EPIQS---RCAVLRYSRLSDSQILKRLLEICAAENVDHAEDGLEAIIYTAQGDMRQAINN 232
Query: 576 LQ 577
LQ
Sbjct: 233 LQ 234
>gi|189198279|ref|XP_001935477.1| chromosome transmission fidelity protein 18 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187981425|gb|EDU48051.1| chromosome transmission fidelity protein 18 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1079
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 122/283 (43%), Gaps = 48/283 (16%)
Query: 326 KTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTK 385
K+V P + G++ +L WTEKYR K ++VG+++ + + WL W+ +K
Sbjct: 324 KSVEQPVCKNGKS--NRTLMWTEKYRAKKFTDLVGDERTHRSVLRWLKAWDPIVFPGASK 381
Query: 386 RNGKK------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG--KA 437
KK +++ K +L+G PG+GKTT A + + G++ E+NASD R
Sbjct: 382 AKVKKAPKGFEEDEQRHRKILLLTGPPGLGKTTLAHVCARQAGYEVQEINASDERSGNVV 441
Query: 438 DAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG------- 490
+I +G N V+ ++ + ++ P V I+DEVDG+ G G
Sbjct: 442 KGRIRDMVGTENVRG----VNTSTINGKIRKAGKPVCV-IVDEVDGVVGGSGGSGEGGFV 496
Query: 491 -GIADLI-------------ASIKISKI----------PIICICNDRYSQKLKSL--VNY 524
+ DL+ S SK P+I ICND Y L+ L +
Sbjct: 497 KALIDLVNLDEKNSKTLGQQQSTTSSKKKKGDRFRLLRPLILICNDVYHPSLRPLRQSSM 556
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567
+ RKP + R+ I EG++ + + L + G
Sbjct: 557 AEIVHIRKPALSMVVSRMQDIFTKEGIQCDSDGVRRLCEATWG 599
>gi|452846354|gb|EME48287.1| hypothetical protein DOTSEDRAFT_147627 [Dothistroma septosporum
NZE10]
Length = 352
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 121/255 (47%), Gaps = 46/255 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP ++IVGN + +++L ++G + I+S
Sbjct: 28 LPWVEKYRPVFLDDIVGNTETIERLKI-------------IAKDGNMPH-------VIIS 67
Query: 404 GSPGMGKTTAAKLVC---QMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
G PG+GKTT+ ++C Q+LG +E+NASD RG + N IK
Sbjct: 68 GMPGIGKTTS--VLCLARQLLGAAYKEAVLELNASDERGIDVVR----------NRIKGF 115
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQ 516
+ + ++ R K ++I+DE D M++G + + + I S CN + ++
Sbjct: 116 -AQKKVTLPAGRQK----IVILDEADSMTSGAQQALRRTM-EIYSSTTRFAFACN-QSNK 168
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
++ L + C+ LR+ + ++ KRL QIA AEG+E ++ + L GD+R AIN L
Sbjct: 169 IIEPLQSRCAILRYARLTDGQVVKRLYQIAKAEGVEYSDDGIAALVFSAEGDMRQAINNL 228
Query: 577 QYMSLSLSVIKYDDI 591
Q + D++
Sbjct: 229 QSTHAGFGFVNGDNV 243
>gi|303274701|ref|XP_003056666.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461018|gb|EEH58311.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 331
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 40/243 (16%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
SS+ W EKYRP+ ++ +++V+ L L N + +
Sbjct: 5 SSVPWVEKYRPRKIGDVSHQEEVVRTLQKALETANMPHM--------------------L 44
Query: 402 LSGSPGMGKTTAAKLVC-QMLG---FQA--IEVNASDSRGKADAKISKGIGGSNANSIKE 455
G PG GKTT A +C Q+ G F++ +E+NASD RG + + N IK
Sbjct: 45 FYGPPGTGKTTCALAICRQLYGPDLFKSRVLELNASDERGISVVR----------NKIKG 94
Query: 456 LVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIAS-IKISKIPIICICNDRY 514
S A P +LI+DE D M+ + + + + K+++ I+C +
Sbjct: 95 FASTAVGQAVPGYPCPPYKILILDEADSMTTDAQSALRRTMETHSKVTRFFILC---NYV 151
Query: 515 SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAIN 574
S+ ++ + + C+ RF+ + ++ RL IA EGL + E + A GD+R AI
Sbjct: 152 SRIIEPIASRCAKFRFKPLGSEVMSDRLKHIAEREGLTLGEGVYDAAAKHSGGDMRKAIT 211
Query: 575 QLQ 577
LQ
Sbjct: 212 LLQ 214
>gi|70606693|ref|YP_255563.1| replication factor C small subunit [Sulfolobus acidocaldarius DSM
639]
gi|449066916|ref|YP_007433998.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449069188|ref|YP_007436269.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
gi|73914011|sp|Q4JAB0.1|RFCS_SULAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|68567341|gb|AAY80270.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
gi|449035424|gb|AGE70850.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449037696|gb|AGE73121.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
Length = 325
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 43/242 (17%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAA 400
+ + W EKYRPK+ +EIV +++V++L ++ N L
Sbjct: 2 EEEILWAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHL-------------------- 41
Query: 401 ILSGSPGMGKTTAA-KLVCQMLGFQA----IEVNASDSRGKADAKISKGIGGSNANSIKE 455
+ +G PG GKTTAA LV + G +E+NASD RG + N +KE
Sbjct: 42 LFAGPPGTGKTTAALALVRDLYGNNYRQYFLELNASDERGIDVIR----------NKVKE 91
Query: 456 LVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYS 515
A S N+ P V+++DE D M+A + + + + I CN S
Sbjct: 92 FARTVA-SNNV-----PFKVILLDEADNMTADAQQALRRTM-ELYTETTRFILACN-YLS 143
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ ++ + + + RF +K+++ RL+QIA E +E + +E + D GD+R AIN
Sbjct: 144 KIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFDPKGIETIFDITQGDMRKAINV 203
Query: 576 LQ 577
+Q
Sbjct: 204 IQ 205
>gi|452986763|gb|EME86519.1| hypothetical protein MYCFIDRAFT_133189 [Pseudocercospora fijiensis
CIRAD86]
Length = 813
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 126/288 (43%), Gaps = 44/288 (15%)
Query: 318 PKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE 377
PKA R + + +P ++++L WTEKYR + +++G+++ + + WL W++
Sbjct: 45 PKAAKTR-EQIPTPPAEPATKSKRANLLWTEKYRARKFTDLIGDERTHRHVMHWLKRWDQ 103
Query: 378 KFLDTGTKRNGKK----QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDS 433
+ KK + + K +L+G PG+GKTT A + + G++ E+NASD
Sbjct: 104 IVFPGSYRPKVKKGALVEEEKPHRKILMLTGPPGLGKTTLAHVCARQAGYEVQEINASDE 163
Query: 434 RGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG- 490
R K I +G N + V N+ + ++ P V I+DEVDG+ G G
Sbjct: 164 RSATVVKGRIRDMVGTENVKN----VDNKTAEGKVKKAAKPVCV-IVDEVDGVVGGSGGG 218
Query: 491 -------GIADLI---------ASIKISKI-------------PIICICNDRYSQKLKSL 521
+ DLI AS+ + P+I +CND Y L+ L
Sbjct: 219 GEGGFVKALIDLIMLDQKNTPLASMSQAPAKNKKKGERFRLLRPLILVCNDVYHPSLRPL 278
Query: 522 --VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567
+ + RKP Q + RL Q+ EG+ + + L + G
Sbjct: 279 RQSSVAEVIHVRKPPVQSLVTRLQQVFEKEGVPCDTDGVRRLCEAAWG 326
>gi|171186449|ref|YP_001795368.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170935661|gb|ACB40922.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 328
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 44/242 (18%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAA 400
+ L W EKYRP++ +E+V +++ +L ++ N L
Sbjct: 1 MAELFWFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHL-------------------- 40
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQ-----AIEVNASDSRGKADAKISKGIGGSNANSIKE 455
+ G PG GKTT A ++ + L + +E+NASD RG N I+E
Sbjct: 41 LFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERG--------------INVIRE 86
Query: 456 LVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYS 515
V A +A + K P ++I+DE D M++ + + I I I + N S
Sbjct: 87 RVKEFARTAPI---KAPFKLVILDEADNMTSDAQQALRR-IMEIYAQNTRFILLAN-YVS 141
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ + +++ C+ RF + +A+RL IA EG+EV E AL+ + + GD+R AIN
Sbjct: 142 RIIDPIISRCAVFRFSPMPRSLMAERLKYIAKREGIEVGEDALDLIYELSEGDMRKAINL 201
Query: 576 LQ 577
LQ
Sbjct: 202 LQ 203
>gi|116206666|ref|XP_001229142.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183223|gb|EAQ90691.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 356
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 118/255 (46%), Gaps = 46/255 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP ++IVGN + +++L R+G + I+S
Sbjct: 32 LPWVEKYRPVFLDDIVGNTETIERLKI-------------IARDGNMPH-------LIIS 71
Query: 404 GSPGMGKTTAAKLVC---QMLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
G PG+GKTT+ ++C Q+LG +E+NASD RG + + I G +
Sbjct: 72 GMPGIGKTTS--VLCLSRQLLGDSYKEAVLELNASDERGIE--VVRQRIKGFAQKKV--- 124
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQ 516
+ + +H ++I+DE D M++G + + + I + CN ++
Sbjct: 125 --------TLPQGRHK--IVILDEADSMTSGAQQALRRTM-EIYSNTTRFAFACNQS-NK 172
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
++ L + C+ LR+ K ++ KRL+QI AE +E N+ L L GD+R AIN L
Sbjct: 173 IIEPLQSRCAILRYAKLTDAQVVKRLLQIIEAEKVEYNDEGLAALVFSAEGDMRQAINNL 232
Query: 577 QYMSLSLSVIKYDDI 591
Q + D++
Sbjct: 233 QSTFAGFGFVSADNV 247
>gi|347524285|ref|YP_004781855.1| Replication factor C [Pyrolobus fumarii 1A]
gi|343461167|gb|AEM39603.1| Replication factor C [Pyrolobus fumarii 1A]
Length = 327
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 53/246 (21%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
+ L W EKYRPKT +EIV +++V++L ++ N L +
Sbjct: 6 AELLWAEKYRPKTLDEIVNQEEIVRRLKKFVEEKNMPHL--------------------L 45
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQ-----AIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
G PG GKTTAA + L + +E+NASD RG + +KE
Sbjct: 46 FVGPPGTGKTTAAHALAHDLFGENYRQYMLELNASDERGIETIR----------TKVKEF 95
Query: 457 VSNEALSANMDRSKHPK----TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICND 512
RS+ P ++++DE D M+A + + L+ + + I I N
Sbjct: 96 A----------RSRTPPGIPFKIVLLDEADNMTADAQQALRRLM-EMYTASTRFILIAN- 143
Query: 513 RY-SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571
Y S+ ++ + + C+ RF +K+++ RL I EG + +E ALE + + GD+R
Sbjct: 144 -YPSKIIEPIQSRCAIFRFTPLKKEDVVARLKWICEQEGCQYDEEALETIYEISEGDMRR 202
Query: 572 AINQLQ 577
AIN LQ
Sbjct: 203 AINILQ 208
>gi|390361909|ref|XP_780624.3| PREDICTED: chromosome transmission fidelity protein 18 homolog
[Strongylocentrotus purpuratus]
Length = 1028
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 128/347 (36%), Gaps = 95/347 (27%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE-------- 397
W +KY PK +++ + + + L WL W+ K+N K +
Sbjct: 321 WVDKYAPKDYVDLLSDDGVNRNLLFWLKLWDHVVFGKEVKQNKTKNKQEKWKGGGGGGGA 380
Query: 398 -------------------------------------KAAILSGSPGMGKTTAAKLVCQM 420
K A+L G PG+GKTT A ++ +
Sbjct: 381 GAGGGAGQQPNNFNKFKSKFERELEDLELDDQNRPKMKVALLCGPPGLGKTTLAHIIARH 440
Query: 421 LGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDE 480
G+ IE+NASD R K L S+ +++ + + P L++DE
Sbjct: 441 AGYNVIEMNASDDRSLEVFK-------------NRLQSSIQMTSVLTPDQRP-NCLVIDE 486
Query: 481 VDGMSAGDRGGIADLIASIK----------------------ISKIPIICICNDRYSQKL 518
+DG + I L+ IK K PIICICND Y L
Sbjct: 487 IDG---SPQAAINCLLTVIKGGGDSNQAGGGGGGKKRKKDQGPLKRPIICICNDVYVPAL 543
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
K L F +A+R+ I+ L+ + +L L + + DIR +N LQ+
Sbjct: 544 KQLRQLAYVTHFPPTAAARLAQRMYAISKRNQLQTDLTSLMALCVKADNDIRSCLNTLQF 603
Query: 579 MS-----LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK 620
+ ++L ++ +I Q KD+ S +T +LF K
Sbjct: 604 LQQQGKPVTLGLVHSLNIGQ------KDQHKSLYTVWQQLFQLPKAK 644
>gi|322712485|gb|EFZ04058.1| hypothetical protein MAA_01132 [Metarhizium anisopliae ARSEF 23]
Length = 958
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 118/267 (44%), Gaps = 47/267 (17%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLD-------TGTKRNGKK---QN 392
+L WTEKYR + ++ G+ +Q+ WL W+ T+R G K +
Sbjct: 213 TLLWTEKYRARNFMDLCGDDGTNRQVLRWLKRWDPVVFPGQAKAKPVMTRRPGAKHQLEE 272
Query: 393 DASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK--ADAKISKGIGGSNA 450
+ K +L+G PG+GKTT A + + G++ +EVNASD R + +I +G
Sbjct: 273 EKPHRKILMLTGPPGLGKTTLAHVCAKQAGYEVLEVNASDDRSRDVVRDRIRTSLG---T 329
Query: 451 NSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG--------GIADLI------ 496
S+K + +N+A + +K +I+DEVDG+++G + DL+
Sbjct: 330 ESVKNVTNNKASDGSQKIAK--PVCVIVDEVDGVTSGAGASGEGGFIKALIDLVLTDQRN 387
Query: 497 ASIKISKI--------------PIICICNDRYSQKLKSL--VNYCSDLRFRKPRKQEIAK 540
+S S+ P++ ICND Y L+ L N + +P +
Sbjct: 388 SSAPTSEYSHKKKKGDDFRQMRPLVLICNDVYHPSLRPLRQSNLAEIVHVGRPSLDAVVG 447
Query: 541 RLMQIANAEGLEVNEIALEELADRVNG 567
R+ I EG+ ++ A +L + G
Sbjct: 448 RVKNIFEKEGIPCDKDAARKLCEAAWG 474
>gi|344303413|gb|EGW33662.1| hypothetical protein SPAPADRAFT_59031 [Spathaspora passalidarum
NRRL Y-27907]
Length = 324
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 129/278 (46%), Gaps = 54/278 (19%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP +IVGN++ V++L ++G N I+S
Sbjct: 11 LPWVEKYRPYKLQDIVGNEETVERLKI-------------IAKDGNMPN-------MIIS 50
Query: 404 GSPGMGKTTAAK-LVCQMLG---FQA-IEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ L ++LG QA +E+NASD RG + N IK+
Sbjct: 51 GLPGIGKTTSVHCLAHELLGEYYHQATLELNASDDRGIDVVR----------NKIKQFAQ 100
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+ + + +H ++I+DE D M+ G + + + I + CN S+ +
Sbjct: 101 TKIV---LPPGRHK--IIILDEADSMTPGAQQALRRTM-EIYSNSTRFAFACNQS-SKII 153
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ L + C+ LR+ K +E+ RL++IA E ++ N L+ L GD+R AIN LQ
Sbjct: 154 EPLQSRCAILRYNKLADEEVLARLLEIAKMEEVKYNSEGLQALIFTAEGDMRQAINNLQS 213
Query: 579 MSL------SLSVIKYDD------IRQRLLSSAKDEDI 604
++V K D I+ LLS KD+D+
Sbjct: 214 TVAGFGFVNDVNVFKIVDQPHPLVIQNILLSCVKDKDL 251
>gi|366997707|ref|XP_003683590.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
gi|357521885|emb|CCE61156.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
Length = 325
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 119/253 (47%), Gaps = 42/253 (16%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP +IVGN+ +++L K K N I+S
Sbjct: 10 LPWVEKYRPHLLKDIVGNEDTIERL----------------KHIAKDGN----MPHMIIS 49
Query: 404 GSPGMGKTTAAK-LVCQMLG---FQAI-EVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ L ++LG QA+ E+NASD RG + N IK
Sbjct: 50 GLPGIGKTTSIHCLAHELLGDSYSQAVLELNASDDRGIDVVR----------NQIKHFAQ 99
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+ ++ KH ++I+DE D M+AG + + + I + CN + ++ +
Sbjct: 100 KKC---HLPTGKHK--IIILDEADSMTAGAQQALRRTM-EIYSNTTRFAFACN-QSNKII 152
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ L + C+ LR+ K +++ KRL++I AE ++ LE L GD+R AIN LQ
Sbjct: 153 EPLQSRCAILRYTKLSDEQVLKRLLEITKAEDVKYTNDGLEALIFTAEGDMRQAINNLQS 212
Query: 579 MSLSLSVIKYDDI 591
S++ D++
Sbjct: 213 TVAGHSLVNGDNV 225
>gi|66359084|ref|XP_626720.1| replication factor C like AAA+ ATpase [Cryptosporidium parvum Iowa
II]
gi|46228380|gb|EAK89279.1| replication factor C like AAA+ ATpase [Cryptosporidium parvum Iowa
II]
Length = 339
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 124/261 (47%), Gaps = 44/261 (16%)
Query: 337 QNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASA 396
Q ++ S+ W EKYRPK +E+VGN++++ +L H N L
Sbjct: 9 QILEMSTQIWIEKYRPKILDEMVGNEEVLTRLKVLAKHGNMPNL---------------- 52
Query: 397 EKAAILSGSPGMGKTTAAK-LVCQMLGFQ----AIEVNASDSRGKADAKISKGIGGSNAN 451
+LSG PG GKTT+ L +MLG + +E+NASD RG +
Sbjct: 53 ----LLSGPPGTGKTTSIHCLASEMLGSKYGRAVLELNASDDRG--------------ID 94
Query: 452 SIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKIS-KIPIICIC 510
+++ + + A +D + ++I+DEVD M+ + + L+ S + + C
Sbjct: 95 VVRDKIKSFA-REKIDLPEGRHKIVILDEVDSMTDSAQQALRRLMEVYSESTRFALAC-- 151
Query: 511 NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570
++ ++ ++ + + C+ +R+ K +I KRL +I E + + ++ L +GD+R
Sbjct: 152 -NQSTKIIEPIQSRCAIIRYSKLTDAQIRKRLFEIIKMENIPYVDSGIDTLVFTADGDMR 210
Query: 571 MAINQLQYMSLSLSVIKYDDI 591
+ IN LQ S++ D++
Sbjct: 211 IVINNLQATYHGFSMVSRDNV 231
>gi|149235013|ref|XP_001523385.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146452794|gb|EDK47050.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 321
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 116/240 (48%), Gaps = 43/240 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP+ ++IVGN++ V++L ++G + I+S
Sbjct: 8 LPWVEKYRPRVLDDIVGNEETVERLKI-------------IAKDGNIPH-------MIIS 47
Query: 404 GSPGMGKTTAAK-LVCQMLG----FQA-IEVNASDSRGKADAKISKGIGGSNANSIKELV 457
G PG+GKTT+ L ++LG QA +E+NASD RG + N IK+
Sbjct: 48 GLPGIGKTTSVHCLAYELLGKEYYHQATMELNASDDRGIDVVR----------NKIKQFA 97
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQK 517
+ L R+K ++I+DE D M+ G + + + I + + CN +
Sbjct: 98 QTKILIPP-GRTK----IIILDEADSMTPGAQQALRRTM-EIYSNTTRFVFACNQSL-KI 150
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
++ L + C+ LR+ K +E+ RL++I AE ++ N L+ L GD+R AIN LQ
Sbjct: 151 IEPLQSRCAILRYNKLSDEEVLARLLEIIKAEDVKFNNEGLQALIFSAEGDMRQAINNLQ 210
>gi|330929355|ref|XP_003302614.1| hypothetical protein PTT_14492 [Pyrenophora teres f. teres 0-1]
gi|311321947|gb|EFQ89315.1| hypothetical protein PTT_14492 [Pyrenophora teres f. teres 0-1]
Length = 1079
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 122/283 (43%), Gaps = 48/283 (16%)
Query: 326 KTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTK 385
K++ P + G++ +L WTEKYR K ++VG+++ + + WL W+ +K
Sbjct: 324 KSIEQPVCKIGKS--NRTLMWTEKYRAKKFTDLVGDERTHRSVLRWLKAWDPIVFPGASK 381
Query: 386 R------NGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG--KA 437
NG ++++ K +L+G PG+GKTT A + + G++ E+NASD R
Sbjct: 382 AKVKKAPNGFEEDEQKHRKILLLTGPPGLGKTTLAHVCARQAGYEVQEINASDERSGNVV 441
Query: 438 DAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG------- 490
+I +G N V+ + + ++ P V I+DEVDG+ G G
Sbjct: 442 KGRIRDMVGTENVRG----VNTSTVKGKIRKAGKPVCV-IVDEVDGVVGGSGGSGEGGFV 496
Query: 491 -GIADLI-ASIKISKI----------------------PIICICNDRYSQKLKSL--VNY 524
+ DL+ K SK P+I ICND Y L+ L +
Sbjct: 497 KALIDLVNLDEKNSKTLGQQQSTTTTKKKKGDRFRLLRPLILICNDVYHPSLRPLRQSSM 556
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567
+ RKP + R+ I EG++ + + L + G
Sbjct: 557 AEIVHIRKPALSMVVSRMQDIFTKEGIQCDSDGVRRLCEATWG 599
>gi|241959612|ref|XP_002422525.1| replication factor C subunit, putative [Candida dubliniensis CD36]
gi|223645870|emb|CAX40533.1| replication factor C subunit, putative [Candida dubliniensis CD36]
Length = 323
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 129/279 (46%), Gaps = 55/279 (19%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPK +IVGN++ V++L + ++G N ILS
Sbjct: 9 LPWVEKYRPKKLEDIVGNEETVERLKLIV-------------QDGNMPN-------MILS 48
Query: 404 GSPGMGKTTAAK-LVCQMLGFQ-----AIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
G PG+GKTT+ L ++LG + +E+NASD RG + N IK+
Sbjct: 49 GLPGIGKTTSIHCLAYELLGEEYYHQATMELNASDDRGIDVVR----------NKIKQFA 98
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQK 517
+ +S R K ++I+DE D M+ G + + + I + CN S+
Sbjct: 99 QTK-ISLPPGRQK----IIILDEADSMTPGAQQALRRTM-EIYSNTTRFAFACNQS-SKI 151
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
++ L + C+ LR+ + +E+ RL++I E ++ N L+ L GD+R AIN LQ
Sbjct: 152 IEPLQSRCAILRYNRLSDEEVLARLLEIIKMEDVQYNTEGLQALVFTAEGDMRQAINNLQ 211
Query: 578 YMSL------SLSVIKYDD------IRQRLLSSAKDEDI 604
++V K D I+ LLS +D+DI
Sbjct: 212 STVAGFEFVNDVNVFKIVDQPHPLVIQSILLSCLRDKDI 250
>gi|449550911|gb|EMD41875.1| hypothetical protein CERSUDRAFT_102269 [Ceriporiopsis subvermispora
B]
Length = 346
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 128/270 (47%), Gaps = 49/270 (18%)
Query: 330 SPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGK 389
+PA N+ L W EKYRP+ +++VGN + +++L R+G
Sbjct: 11 APANGNASNVPYE-LPWVEKYRPQKLDDVVGNTETIERLKI-------------IARDGN 56
Query: 390 KQNDASAEKAAILSGSPGMGKTTAAK-LVCQMLGFQ----AIEVNASDSRGKADAKISKG 444
+ I+SG PG+GKTT+ L Q+LG +E+NASD RG +
Sbjct: 57 CPH-------IIISGMPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVR---- 105
Query: 445 IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGI---ADLIASIKI 501
N IK + + ++ R K ++I+DE D M++G + + ++ A+
Sbjct: 106 ------NKIKTF-AQKKVTLPPGRQK----IVILDEADSMTSGAQQALRRTMEIYANT-- 152
Query: 502 SKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEEL 561
++ + C +++ + ++S C+ LR+ K R E+ +RL++I AE ++ N+ L L
Sbjct: 153 TRFALACNMSNKIIEPIQS---RCAILRYTKLRDTEVLQRLLEICQAEQVKYNDDGLTAL 209
Query: 562 ADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
GD+R AIN LQ + D++
Sbjct: 210 IFTAEGDMRQAINNLQSTHSGFGFVSGDNV 239
>gi|332796204|ref|YP_004457704.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
gi|332693939|gb|AEE93406.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
Length = 326
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 43/242 (17%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAA 400
+ + W EKYRP++ ++IV + +V++L ++ N L
Sbjct: 2 EEEILWAEKYRPRSLDDIVNQKDIVERLKRFVKEKNMPHL-------------------- 41
Query: 401 ILSGSPGMGKTTAA-KLVCQMLG--FQA--IEVNASDSRGKADAKISKGIGGSNANSIKE 455
+ +G PG GKTTAA LV + G ++ +E+NASD RG + N +KE
Sbjct: 42 LFAGPPGTGKTTAALALVHDLYGDSYEQFFLELNASDERGIDVIR----------NKVKE 91
Query: 456 LVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYS 515
+ M S P V+++DE D M+A + + + + I CN S
Sbjct: 92 F------ARTMVSSSVPFKVILLDEADNMTADAQQALRRTM-ELYTESTRFILACN-YLS 143
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ + + + + RF +K+++ RL IA E +E +E ALE + D GD+R AIN
Sbjct: 144 KIIDPIQSRTALFRFYPLKKEDVVSRLEFIAKEEKVEYDEKALETIYDVTMGDMRKAINT 203
Query: 576 LQ 577
LQ
Sbjct: 204 LQ 205
>gi|264678823|ref|YP_003278730.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2]
gi|262209336|gb|ACY33434.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2]
Length = 708
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 191 HKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDE 250
H E E E AP L GLT V++GTL +L R+ A+D+++ G +V+GSVSKKT+Y++
Sbjct: 617 HWEEGEPAEKAPQILAGLTVVLTGTLPTLGRDAAKDMLEAAGAKVSGSVSKKTSYVVAGA 676
Query: 251 DIAGAKSTKAKELGTPFLTEDGLFDMIRASKP 282
+ AG+K KA+ELG P L E G+ ++R +P
Sbjct: 677 E-AGSKLAKAEELGVPVLDEAGMLALLRGEQP 707
>gi|170030843|ref|XP_001843297.1| replication factor C subunit 4 [Culex quinquefasciatus]
gi|167868416|gb|EDS31799.1| replication factor C subunit 4 [Culex quinquefasciatus]
Length = 355
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 115/252 (45%), Gaps = 42/252 (16%)
Query: 336 GQNIQQSSLT----WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQ 391
GQ +++ S T W EKYRPK +++V ++V L L+ + L
Sbjct: 18 GQPVEKRSKTHSVPWVEKYRPKNVDDVVEQGEVVAVLRESLSTADLPNL----------- 66
Query: 392 NDASAEKAAILSGSPGMGKTT-----AAKLVCQMLGFQAIEVNASDSRGKADAKISKGIG 446
+L G PG GKT+ A +L M + +E+NASD RG A +
Sbjct: 67 ---------LLYGPPGTGKTSTILAAARQLFGDMFKERILELNASDDRGIAVIR------ 111
Query: 447 GSNANSIKELVSNEALSANMD-RSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIP 505
N +K A D + P ++I+DE D M+ + + + K +K
Sbjct: 112 ----NKVKTFAQLAASGTRPDGKPCPPFKIVILDEADAMTHAAQAALRRTME--KETKTT 165
Query: 506 IICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV 565
C+ + S+ ++ + + C+ RF+ R+++I +RL I + E +EV + A +++ D
Sbjct: 166 RFCLVCNYVSRIIEPITSRCTKFRFKPLRQEKIIERLRFICDQETVEVEDQAYQDIVDIS 225
Query: 566 NGDIRMAINQLQ 577
GD+R AI LQ
Sbjct: 226 GGDLRRAITTLQ 237
>gi|299529801|ref|ZP_07043234.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44]
gi|298722215|gb|EFI63139.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44]
Length = 708
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 191 HKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDE 250
H E E E AP L GLT V++GTL +L R+ A+D+++ G +V+GSVSKKT+Y++
Sbjct: 617 HWEEGEPAEKAPQILAGLTVVLTGTLPTLGRDAAKDMLEAAGAKVSGSVSKKTSYVVAGA 676
Query: 251 DIAGAKSTKAKELGTPFLTEDGLFDMIRASKP 282
+ AG+K KA+ELG P L E G+ ++R +P
Sbjct: 677 E-AGSKLAKAEELGVPVLDEAGMLALLRGEQP 707
>gi|407926292|gb|EKG19259.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 352
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 127/275 (46%), Gaps = 51/275 (18%)
Query: 329 ASPAKRKGQNIQQS-----SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTG 383
+S A R G Q + L W EKYRP ++IVGN + +++L
Sbjct: 7 SSAAARNGLKAQPNGAAGYELPWVEKYRPVFLDDIVGNTETIERLKI------------- 53
Query: 384 TKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVC---QMLG----FQAIEVNASDSRGK 436
++G + I+SG PG+GKTT+ ++C Q+LG +E+NASD RG
Sbjct: 54 IAKDGNMPH-------VIISGMPGIGKTTS--ILCLARQLLGDAYKEAVLELNASDERGI 104
Query: 437 ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLI 496
+ N IK + + ++ R K ++I+DE D M++G + + +
Sbjct: 105 DVVR----------NRIKGF-AQKKVTLPPGRQK----IVILDEADSMTSGAQQALRRTM 149
Query: 497 ASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEI 556
I S CN + ++ ++ L + C+ LR+ + ++ KRLMQI AE +E +E
Sbjct: 150 -EIYSSTTRFAFACN-QSNKIIEPLQSRCAILRYSRLTDAQLVKRLMQICGAEQVEYSED 207
Query: 557 ALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
L L GD+R AIN LQ + D++
Sbjct: 208 GLAALVFSAEGDMRQAINNLQSTHAGFGFVNGDNV 242
>gi|302348723|ref|YP_003816361.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
gi|302329135|gb|ADL19330.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
Length = 329
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 125/270 (46%), Gaps = 53/270 (19%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L WTEKYRP++ EIV +++V++L ++A N L + +
Sbjct: 8 LLWTEKYRPRSLKEIVNQKEIVERLSKFVAEKNMPHL--------------------LFA 47
Query: 404 GSPGMGKTTAAKLVCQML-----GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG GKTTAA + L +E+NASD RG ++I+E V
Sbjct: 48 GPPGTGKTTAAHALAHDLYGDNYTQYMLELNASDERG--------------IDTIREKVK 93
Query: 459 NEALSANMDRSKHPK----TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY 514
A RSK P ++++DE D M+A + + L+ + + I N
Sbjct: 94 EFA------RSKTPPDIPFKIVLLDEADNMTADAQQALRRLM-ELYSANTRFILAANFP- 145
Query: 515 SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAIN 574
S+ + + + C+ RF K ++ RL IA E ++ +E ALE + D GD+R AIN
Sbjct: 146 SKIIDPIQSRCAFFRFTPLGKDDVVGRLRYIAEKENVKYDEDALEAIYDISEGDMRKAIN 205
Query: 575 QLQYMSLSLSVIKYDDIRQRLLSSAKDEDI 604
LQ + SL + D + +++ A+ +DI
Sbjct: 206 ILQ-TAASLGKVDVDSV-YKVVGMARPKDI 233
>gi|240104119|ref|YP_002960428.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
gi|239911673|gb|ACS34564.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
Length = 333
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 112/238 (47%), Gaps = 45/238 (18%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP+ ++IVG + +VK+L + + TG+ + + +G
Sbjct: 18 WVEKYRPQRLDDIVGQEHIVKRL--------KHYAKTGSMPH------------LLFAGP 57
Query: 406 PGMGKTTAA-KLVCQMLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
PG GKT+AA L ++ G +E+NASD RG N I+E V
Sbjct: 58 PGTGKTSAALALARELFGENWRHNFLELNASDERG--------------INVIREKVKEF 103
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL-K 519
A + + + ++ +DE D ++ + + + + + I CN YS K+ +
Sbjct: 104 ARTKPIGGASF--KIIFLDEADALTQDAQQALRRTMEMFS-NNVRFILSCN--YSSKIIE 158
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ + C+ RFR ++IAKR+ IA EGLE+ E L+ + GD+R AIN LQ
Sbjct: 159 PIQSRCAIFRFRPLNDEDIAKRIRYIAEQEGLELTEEGLQAILYVAEGDLRRAINVLQ 216
>gi|410077369|ref|XP_003956266.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
gi|372462850|emb|CCF57131.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
Length = 321
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 128/282 (45%), Gaps = 60/282 (21%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP+ +IVGN++ +++L K+ I+S
Sbjct: 10 LPWVEKYRPQLLKDIVGNEETIERL--------------------KQIAQDGNMPHMIIS 49
Query: 404 GSPGMGKTTAAK-LVCQMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ L ++LG +E+NASD RG + N IK
Sbjct: 50 GLPGIGKTTSVHCLAHELLGSHYSQAVLELNASDDRGIDVIR----------NQIKHFAQ 99
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGI---ADLIASIKISKIPIICICNDRYS 515
+ N+ KH ++I+DE D M+AG + + +L ++ ++ C +++
Sbjct: 100 KKL---NLPVGKHK--IIILDEADSMTAGAQQALRRTMELYSNT--TRFAFACNQSNKII 152
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ L+S C+ LR+ K +++ KRL+++ E +E LE + GD+R AIN
Sbjct: 153 EPLQS---RCAILRYSKLSDEQVLKRLLEVIELEKVEYTNDGLEAIIFTAEGDMRQAINN 209
Query: 576 LQYMSLSLSVIKYDD------------IRQRLLSSAKDEDIS 605
LQ ++ D+ +R+ LLS+ DE ++
Sbjct: 210 LQSTVAGHGLVNGDNVFKIVDSPHPLIVRKMLLSTTLDESMN 251
>gi|389845694|ref|YP_006347933.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|448616684|ref|ZP_21665394.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|388243000|gb|AFK17946.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|445751339|gb|EMA02776.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
Length = 330
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 152/343 (44%), Gaps = 73/343 (21%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP+T ++I G +++V++L +++ + L + +G
Sbjct: 19 WIEKYRPQTLDDIYGQEEIVERLRSYIERDDLPHL--------------------LFAGP 58
Query: 406 PGMGKTTAAKLVCQML-------GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G+GKTT+A + + L F +E+NASD RG + +++ +
Sbjct: 59 AGVGKTTSATAIARTLYGDDWRGNF--LELNASDERG--------------IDVVRDRIK 102
Query: 459 NEALSA-NMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQK 517
N A S+ N +R T++ +DE D ++ + + + K I CN YS K
Sbjct: 103 NFARSSFNPERGY---TIIFLDEADSLTNDAQSALRRTMEEFS-DKTRFILSCN--YSSK 156
Query: 518 L-KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
+ + + C+ RF IA++ IA AEG+E+ E L+ L GD+R AIN L
Sbjct: 157 IIDPIQSRCAVFRFSPLGDDAIAEQTRDIAEAEGIELTEGGLDALVYAAGGDMRRAINSL 216
Query: 577 QYMSLSLSVIKYDDIRQRLLSSAKDEDIS---------PFTAVDKLF-------GFNGGK 620
Q + + V+ + + + S+A+ EDI FTA K G GG
Sbjct: 217 QAAATTGEVVDEEAV-YLITSTARPEDIEKMVRAAIDGEFTAARKQLETLIVDTGMAGGD 275
Query: 621 LRMDER----IDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
+ +D+ D + + D V L+ + +YR S ++V+
Sbjct: 276 I-IDQLHRSVWDFDLDERDAVHLMERIGEADYRISEGANEQVQ 317
>gi|119872170|ref|YP_930177.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415670|sp|A1RSA2.1|RFCS1_PYRIL RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|119673578|gb|ABL87834.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 329
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 43/242 (17%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAA 400
+ L W EKYRP++ +E+V +++ +L ++ N L
Sbjct: 1 MAELFWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHL-------------------- 40
Query: 401 ILSGSPGMGKTTAAKLVCQMLGFQ-----AIEVNASDSRGKADAKISKGIGGSNANSIKE 455
+ G PG GKTT A ++ + L + +E+NASD RG N I+E
Sbjct: 41 LFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERG--------------INVIRE 86
Query: 456 LVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYS 515
V A +A + K P ++I+DE D M++ + + I I I + N S
Sbjct: 87 RVKEFARTAPV--GKAPFKLVILDEADNMTSDAQQALRR-IMEIYAQNTRFILLAN-YVS 142
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ + +++ C+ RF + +A+RL IA +EG+EV E A++ + + GD+R AIN
Sbjct: 143 RIIDPIISRCAVFRFSPMPRHLMAERLKYIAKSEGVEVKEDAIDLIYELSEGDMRKAINI 202
Query: 576 LQ 577
LQ
Sbjct: 203 LQ 204
>gi|336377010|gb|EGO05345.1| hypothetical protein SERLA73DRAFT_174456 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390053|gb|EGO31196.1| hypothetical protein SERLADRAFT_455984 [Serpula lacrymans var.
lacrymans S7.9]
Length = 343
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 42/239 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP+ +++VGN +++L ++G + I+S
Sbjct: 22 LPWVEKYRPQNLDDVVGNVDTIERLKV-------------IAKDGNCPH-------IIIS 61
Query: 404 GSPGMGKTTAAK-LVCQMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ L Q+LG +E+NASD RG + N IK
Sbjct: 62 GLPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVR----------NKIKAFAQ 111
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+ + ++H ++I+DE D M+ G + + + S C+ + ++ +
Sbjct: 112 KKV---TLPPARHK--IVILDEADSMTPGAQQALRRTMEIF--SNTTRFCLACNMSNKII 164
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ + + C+ LR+ K R EI KRL++I E +E N+ L L GD+R AIN LQ
Sbjct: 165 EPIQSRCAILRYAKLRDTEILKRLLEICEMEKVEYNDDGLTALIFTCEGDMRQAINNLQ 223
>gi|410667249|ref|YP_006919620.1| DNA ligase LigA [Thermacetogenium phaeum DSM 12270]
gi|409104996|gb|AFV11121.1| DNA ligase LigA [Thermacetogenium phaeum DSM 12270]
Length = 667
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Query: 195 KEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAG 254
+E+PE L G TFVI+GTL SL R+EAEDLIK++GGR++ SVSK+T+YL+ ++ G
Sbjct: 583 QELPETNDLPLTGKTFVITGTLPSLTRKEAEDLIKKYGGRISSSVSKRTDYLVAGKE-PG 641
Query: 255 AKSTKAKELGTPFLTEDGLFDMIRA 279
K KA+ELG P + E L M+ A
Sbjct: 642 QKYDKARELGIPIIDEAALLRMLPA 666
>gi|403223028|dbj|BAM41159.1| replication factor [Theileria orientalis strain Shintoku]
Length = 331
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 124/261 (47%), Gaps = 53/261 (20%)
Query: 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSG 404
W EKYRP + ++I+GN ++ K+L +F+ + G N +L G
Sbjct: 7 IWIEKYRPNSLDQIIGNPEITKRL---------QFI----AKEGNMPN-------LLLCG 46
Query: 405 SPGMGKTTAAKLVC-QMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVSN 459
PG GKTT+ + +MLG Q IE+NASD RG ++E + N
Sbjct: 47 PPGTGKTTSVLCLAREMLGLQFKNAVIELNASDDRG--------------VEVVRESIKN 92
Query: 460 EAL-SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK--------ISKIPIICIC 510
A S + +KH ++I+DEVD M+ + + + +++ ++ + C
Sbjct: 93 FAKKSLVLPPNKH--KIVILDEVDSMTEAAQQWLTIQLKALRRIMEIYSNTTRFALAC-- 148
Query: 511 NDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570
++ ++ ++ + + C+ +R+ K + +I KRL+ I E L +E L +GD+R
Sbjct: 149 -NQSTKIIEPIQSRCAVIRYSKLKDDQILKRLVDICGMENLNYTNEGMEALLFSADGDLR 207
Query: 571 MAINQLQYMSLSLSVIKYDDI 591
A+N LQ +S V+ +++
Sbjct: 208 RAVNNLQIVSAGFKVVTKENV 228
>gi|324500315|gb|ADY40152.1| Replication factor C subunit 2 [Ascaris suum]
Length = 364
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 44/241 (18%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAIL 402
S+ W EKYRP+ ++VGN+ +++L F G N ++
Sbjct: 45 SIPWLEKYRPQKLQDVVGNKLAIQRLGM--------FAKQGNLPN------------IVI 84
Query: 403 SGSPGMGKTTAA-KLVCQMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
SG PG GKTT+ L ++LG Q +E+NASD RG + N IK
Sbjct: 85 SGPPGCGKTTSIWALARELLGTQIREACLELNASDDRGIDVVR----------NKIKSFA 134
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI-KISKIPIICICNDRYSQ 516
+ ++ +H ++I+DE D M+ G + + + K ++ + C +D+ +
Sbjct: 135 QTKV---SLPEGRH--KIIILDEADSMTEGAQQALRRTMEIYSKTTRFALSCNQSDKIIE 189
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
++S C+ LRF K + +EIA RL+Q+ E + +E ++ L GD+R A+N L
Sbjct: 190 PIQS---RCAILRFSKLKDEEIATRLLQVCTYEQVVYDESGIDALIFTAQGDMRQALNNL 246
Query: 577 Q 577
Q
Sbjct: 247 Q 247
>gi|449018110|dbj|BAM81512.1| replication factor C subunit 5 [Cyanidioschyzon merolae strain 10D]
Length = 366
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 113/250 (45%), Gaps = 45/250 (18%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKA 399
+QS W EKYRP+ +EIV + ++ L +A L
Sbjct: 13 EQSETIWVEKYRPRELDEIVAHDEIRGTLRRLIAERTLPHL------------------- 53
Query: 400 AILSGSPGMGKTTAAKLVC--QMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSI 453
+ G PG GKTTA L C +M G Q +E+NASD RG + +
Sbjct: 54 -LFYGPPGTGKTTAI-LACAREMFGAQFKTMVLELNASDDRG--------------IDVV 97
Query: 454 KELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDR 513
+E + A + ++ K ++I+DE D M++ + + ++ S I ICN
Sbjct: 98 REQIKTFASTRHIYALKAGIKLVILDEADAMTSAAQAALRRIMEKYT-SNIRFCLICN-- 154
Query: 514 YSQKL-KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMA 572
Y+ K+ ++ + C+ RF+ ++ +RL IA+ EG+ V+ A + LA GD+R A
Sbjct: 155 YANKIIPAIQSRCTRFRFQPVPVAQMIQRLEYIADREGVPVDRAAFDALARIAQGDMRRA 214
Query: 573 INQLQYMSLS 582
I +Q L+
Sbjct: 215 IYLMQSTFLA 224
>gi|167042652|gb|ABZ07373.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine crenarchaeote HF4000_ANIW133M9]
gi|167043915|gb|ABZ08603.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine crenarchaeote HF4000_APKG3H9]
gi|167044610|gb|ABZ09283.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine crenarchaeote HF4000_APKG7F11]
Length = 318
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 117/242 (48%), Gaps = 43/242 (17%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
SS+ W EKYRP+ +E++ +++V +++ L + +E +
Sbjct: 4 SSVMWVEKYRPQKISELINQKEIVGSINSMLKNQSEL-------------------PHLL 44
Query: 402 LSGSPGMGKTTAAKLVC-QMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
SGS G+GKT+AA V ++LG +E+NASD RG N ++E
Sbjct: 45 FSGSAGVGKTSAALCVSREILGKHWRDYTLELNASDERG--------------INMVRER 90
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIA-SIKISKIPIICICNDRYS 515
V + A +D ++ P ++I+DE D M+A + + + + KI + +I + S
Sbjct: 91 VKKFSRFAGLD-TEIPFKIIILDEADEMTADAQTALRRITEDTAKICRFILIA---NNLS 146
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ +K + + C +F K +EI +L I E ++ +E L + D +GD+R AIN
Sbjct: 147 KIIKPIQSRCVVFKFTKISDKEILSQLKSIGKKEKIKADEKGLSAICDYTDGDLRHAINI 206
Query: 576 LQ 577
LQ
Sbjct: 207 LQ 208
>gi|418530264|ref|ZP_13096190.1| DNA ligase, NAD-dependent [Comamonas testosteroni ATCC 11996]
gi|371452817|gb|EHN65843.1| DNA ligase, NAD-dependent [Comamonas testosteroni ATCC 11996]
Length = 708
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 191 HKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDE 250
H E E E AP L G+T V++GTL +L R+ A+D+++ G +V+GSVSKKT+Y++
Sbjct: 617 HWDEGEPAEKAPQILAGMTVVLTGTLPTLGRDAAKDMLEAAGAKVSGSVSKKTSYVVAGA 676
Query: 251 DIAGAKSTKAKELGTPFLTEDGLFDMIRASKP 282
+ AG+K KA+ELG P L E G+ ++R +P
Sbjct: 677 E-AGSKLAKAEELGVPVLDEAGMLALLRGEQP 707
>gi|156094975|ref|XP_001613523.1| replication factor c [Plasmodium vivax Sal-1]
gi|148802397|gb|EDL43796.1| replication factor c, putative [Plasmodium vivax]
Length = 1095
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 133/287 (46%), Gaps = 35/287 (12%)
Query: 313 KSTSAPKAPIERMKTVASPAKRKGQNIQ-QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTW 371
+ T KA E KT + G+N++ + + + EKYR K +E++ ++ + +++ W
Sbjct: 228 QQTELGKAHQEEGKTEKKETPQAGKNLKPKKCVNFVEKYRAKYFSELLTDEAINREVLLW 287
Query: 372 LAHWNEKF--------LDTGTKRNGKKQNDASAE--KAAILSGSPGMGKTTAAKLVCQML 421
+ W+E+ G +RN +++ ++E + +L GS G GKTT A +V
Sbjct: 288 MKQWSERIGKGPTSLTSTQGNERNEEEEAKKNSEFQRILLLGGSAGKGKTTLAYVVANHF 347
Query: 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEV 481
F IE+N SD R N ++ LV E++ N P + I+DE+
Sbjct: 348 KFNVIEINGSDDR--------------NKETLIPLV--ESIVCNNSIGSKP-NICIIDEI 390
Query: 482 DGMSAGDRGGIADLIASIK-------ISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPR 534
DG+++ + A + K I + PIICICND Y + LK L +
Sbjct: 391 DGLTSTQQNIEAVMKFLTKKDRRNRSIIRRPIICICNDIYHKSLKELRKISKVVVVESVN 450
Query: 535 KQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
+ + R+ I EG+ + + +L D GDIR +N + ++S+
Sbjct: 451 HEMLKGRINFICEREGISIGNETVNKLVDICKGDIRAVLNTICFLSI 497
>gi|380470252|emb|CCF47823.1| replication factor C subunit 4 [Colletotrichum higginsianum]
Length = 361
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 128/290 (44%), Gaps = 52/290 (17%)
Query: 307 PQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVK 366
P+ + STSA K + T AS + L W EKYRP +++VGN + +
Sbjct: 10 PEEVGESSTSAAKKAL----TAAS------NGVPNYELPWVEKYRPVFLDDVVGNTETID 59
Query: 367 QLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVC-QMLGFQ- 424
+L N + I+SG PG+GKTT+ + Q+LG
Sbjct: 60 RLKIIAKEGNMPHV--------------------IISGMPGIGKTTSVLCLARQLLGDSY 99
Query: 425 ---AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEV 481
+E+NASD RG + N IK + + + +H ++I+DE
Sbjct: 100 KEAVLELNASDERGIDVVR----------NRIKGFAQKKV---TLPQGRHK--LVILDEA 144
Query: 482 DGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541
D M++G + + + I + CN + ++ ++ L + C+ LR+ + +++ KR
Sbjct: 145 DSMTSGAQQALRRTM-EIYSNTTRFAFACN-QSNKIIEPLQSRCAILRYARLTDEQVVKR 202
Query: 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
LMQI AE +E ++ L L GD+R AIN LQ + D++
Sbjct: 203 LMQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNV 252
>gi|398408041|ref|XP_003855486.1| hypothetical protein MYCGRDRAFT_99173 [Zymoseptoria tritici IPO323]
gi|339475370|gb|EGP90462.1| hypothetical protein MYCGRDRAFT_99173 [Zymoseptoria tritici IPO323]
Length = 854
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 114/268 (42%), Gaps = 45/268 (16%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASA--- 396
+ SSL WTEKYR K +++G+++ + + WL W++ + K +D +A
Sbjct: 105 KTSSLLWTEKYRAKKFTDLIGDERTHRAVMHWLKRWDQIVFPGSYRPKKPKGSDDTAFVE 164
Query: 397 ---EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNAN 451
K +L+G PG+GKTT A + + G++ E+NASD R + K I +G N
Sbjct: 165 RPLRKILLLTGPPGLGKTTLAHVCAKQAGYEVQEINASDERSSSVVKGRIRDMVGTENVK 224
Query: 452 SIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG--------GIADLIA-----S 498
I + S + ++ P V I+DEVDG+ G G + DLI S
Sbjct: 225 GI----DTKTASGHTRKAGKPVCV-IVDEVDGVVGGSGGSGEGGFVKALIDLIMLDQKNS 279
Query: 499 IKISKI-----------------PIICICNDRYSQKLKSLVN--YCSDLRFRKPRKQEIA 539
+ + P+I +CND Y L+ L N +R K Q +
Sbjct: 280 TPLGSLQQAPTKKKKGERFRMLRPLILVCNDVYHPSLRPLRNSSVAEVIRVGKAPVQNMI 339
Query: 540 KRLMQIANAEGLEVNEIALEELADRVNG 567
RL I EG+ + L + G
Sbjct: 340 SRLHGIFQKEGVPCETDGVRRLCEATWG 367
>gi|448123321|ref|XP_004204663.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|448125599|ref|XP_004205221.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|358249854|emb|CCE72920.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|358350202|emb|CCE73481.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
Length = 327
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 114/244 (46%), Gaps = 43/244 (17%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKA 399
Q L W EKYRPK ++IVGN++ V++L N +
Sbjct: 7 QHLELPWVEKYRPKKLDDIVGNEETVERLKLIALDGNMPHM------------------- 47
Query: 400 AILSGSPGMGKTTAAK-LVCQMLG----FQA-IEVNASDSRGKADAKISKGIGGSNANSI 453
ILSG PG+GKTT+ L ++LG QA +E+NASD RG + N I
Sbjct: 48 -ILSGLPGIGKTTSIHCLAYELLGPELYHQATMELNASDDRGIDVVR----------NKI 96
Query: 454 KELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDR 513
K+ + + +H ++I+DE D M+ G + + + I + CN
Sbjct: 97 KQFAQTKI---QLPAGRH--KIIILDEADSMTPGAQQALRRTM-EIYSNTTRFAFACNQS 150
Query: 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
S+ ++ L + C+ LR+ K +++ +RL++I E ++ N L+ L GD+R AI
Sbjct: 151 -SKIIEPLQSRCAILRYNKLSDEQVLQRLLEITKLEDVKYNSEGLQALIFTAEGDMRQAI 209
Query: 574 NQLQ 577
N LQ
Sbjct: 210 NNLQ 213
>gi|213402449|ref|XP_002171997.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
gi|212000044|gb|EEB05704.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
Length = 344
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 45/249 (18%)
Query: 336 GQNIQQS-SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDA 394
GQ + + L W EKYRP ++IVGN+ + +L R+G +
Sbjct: 14 GQKVATTYELPWVEKYRPVVLDDIVGNEDTIARLKV-------------IARDGNMPH-- 58
Query: 395 SAEKAAILSGSPGMGKTTAAK-LVCQMLGFQ----AIEVNASDSRGKADAKISKGIGGSN 449
I+SG PG+GKTT+ L Q+LG +E+NASD RG +
Sbjct: 59 -----MIISGMPGIGKTTSVLCLAHQLLGSAYREGVLELNASDERGIDVVR--------- 104
Query: 450 ANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI-KISKIPIIC 508
N IK + N+ +H ++I+DE D M+AG + + + ++ + C
Sbjct: 105 -NKIKGFAQKKV---NLPPGRHK--IVILDEADSMTAGAQQALRRTMEIYSNTTRFALAC 158
Query: 509 ICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGD 568
+++ + ++S C+ LR+ + +Q+I KRL +I AE + + + + L GD
Sbjct: 159 NQSNKIIEPIQS---RCAILRYSRLNEQQIQKRLSEICKAESVSITDDGMAALIMTAEGD 215
Query: 569 IRMAINQLQ 577
+R AIN LQ
Sbjct: 216 MRQAINNLQ 224
>gi|241725881|ref|XP_002412213.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
gi|215505426|gb|EEC14920.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
Length = 336
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 113/252 (44%), Gaps = 44/252 (17%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP NEIVGN++ + +L + R G N ILSG
Sbjct: 21 WVEKYRPAKFNEIVGNEETIARLEVF-------------SREGNVPN-------VILSGP 60
Query: 406 PGMGKTTAAKLVCQML---GFQ--AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
PG+GKTT + ++L F+ +E+NAS+ RG + N IK +
Sbjct: 61 PGVGKTTTILCLSRILLGPSFRDAVLELNASNDRGIDVVR----------NKIKMFAQKK 110
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI-KISKIPIICICNDRYSQKLK 519
+ KH V+I+DE D M+ G + + + K ++ + C +D+ + ++
Sbjct: 111 V---TLPPGKHK--VIILDEADSMTEGAQQALRRTMEIYSKTTRFALACNTSDKIIEPIQ 165
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
S C+ +RF + ++ +L+ I E + E LE L GD+R AIN LQ
Sbjct: 166 S---RCAVVRFSRLSDAQVLAKLLDICKQEDVSYAEDGLEALVFTAQGDMRQAINNLQST 222
Query: 580 SLSLSVIKYDDI 591
+ S + +++
Sbjct: 223 FVGFSHVNSENV 234
>gi|356515927|ref|XP_003526648.1| PREDICTED: replication factor C subunit 4-like isoform 3 [Glycine
max]
Length = 335
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 41/244 (16%)
Query: 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK 398
I QSS W EKYRPK ++ ++V+ L L +TG+ +
Sbjct: 4 ILQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTL--------ETGSCPH----------- 44
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
+ G PG GKTT A + L F +E+NASD RG + IK+ +
Sbjct: 45 -MLFYGPPGTGKTTTALAIAHQL-FGVLELNASDDRGINVVR----------TKIKDFAA 92
Query: 459 NEALSANMDRSKHPK---TVLIMDEVDGMSAGDRGGIADLIASI-KISKIPIICICNDRY 514
A+ N ++ +P ++++DE D M+ + + + + K+++ IC +
Sbjct: 93 -VAVGTNQCKNGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFIC---NYV 148
Query: 515 SQKLKSLVNYCSDLRFRKPRKQEI-AKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
S+ ++ L + C+ RF KP +EI + R++ I+ EGL ++ AL L+ +GD+R AI
Sbjct: 149 SRIIEPLASRCAKFRF-KPLSEEIMSSRILYISQEEGLCLDAEALSTLSFISHGDLRRAI 207
Query: 574 NQLQ 577
LQ
Sbjct: 208 TYLQ 211
>gi|268569884|ref|XP_002648361.1| C. briggsae CBR-RFC-4.2 protein [Caenorhabditis briggsae]
gi|268573696|ref|XP_002641825.1| C. briggsae CBR-RFC-4.1 protein [Caenorhabditis briggsae]
Length = 335
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 117/264 (44%), Gaps = 53/264 (20%)
Query: 330 SPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGK 389
S A+ + +Q LTWTEKYRPKT ++I +++V L L + L
Sbjct: 2 SEAREVDSSKKQKVLTWTEKYRPKTLDDIAHQEEVVTMLKGALQGKDLPHL--------- 52
Query: 390 KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI------EVNASDSRG------KA 437
+ G PG GKT+ A C+ L +I ++NASD RG K
Sbjct: 53 -----------LFYGPPGTGKTSTALAFCRQLFPSSIFRDRVLDLNASDERGISVVRQKI 101
Query: 438 DAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIA 497
A +G SN + L ++I+DEVD M+ + + +I
Sbjct: 102 QAFSKTTLGSSNKEDVLRL-----------------KIIILDEVDAMTREAQAAMRRVIE 144
Query: 498 SI-KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEI 556
K ++ +IC + S+ + +V+ C+ RF+ + +RL I +AEG ++E
Sbjct: 145 DFSKTTRFILIC---NYVSRLIPPVVSRCAKFRFKSLPAEVQVQRLRTICDAEGTPMSED 201
Query: 557 ALEELADRVNGDIRMAINQLQYMS 580
L+++ + GD+R A+ LQ ++
Sbjct: 202 ELKQVMEYSEGDLRRAVCTLQSLA 225
>gi|221066629|ref|ZP_03542734.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1]
gi|220711652|gb|EED67020.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1]
Length = 708
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 191 HKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDE 250
H E E E AP L GLT V++GTL +L R+ A+D+++ G +V+GSVSKKT+Y++
Sbjct: 617 HWEEGEPVEKAPQILAGLTVVLTGTLPTLGRDVAKDMLEAAGAKVSGSVSKKTSYVVAGA 676
Query: 251 DIAGAKSTKAKELGTPFLTEDGLFDMIRASKP 282
+ AG+K KA+ELG P L E G+ ++R +P
Sbjct: 677 E-AGSKLAKAEELGVPVLDEAGMLALLRGEQP 707
>gi|123505671|ref|XP_001329029.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121911979|gb|EAY16806.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 114/249 (45%), Gaps = 47/249 (18%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAA 400
Q+ L W EKYRP +++V ++ + + +KF+D +
Sbjct: 4 QNVLPWVEKYRPSKLDDVVSHEACISTI--------KKFIDKNCLPH------------L 43
Query: 401 ILSGSPGMGKTTAAKLVCQML-----GFQAIEVNASDSRGKADAKISKGIGGSNANSIKE 455
G PG GKTT A + L +E+NASD RG ++ IK+
Sbjct: 44 CFHGPPGTGKTTTAIAISHQLYGNDTSMSVLELNASDERGIDTVRMR----------IKD 93
Query: 456 LVSNEALSANMDRSKHPKT-VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY 514
S+ +L PK ++I+DE D M+ + + ++ S + I ICN Y
Sbjct: 94 FASSRSLFG-------PKIKLIILDESDAMTGAAQAALRRIMEQFT-SNVRFILICN--Y 143
Query: 515 SQKL-KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573
+KL +L + C++ RF+ ++ AK L IA+AE L ++E L+ L GD+R +I
Sbjct: 144 PEKLIPALRSRCTEFRFQPLPDEDAAKFLRHIADAEKLNMDEGGLKALLKLGIGDLRRSI 203
Query: 574 NQLQYMSLS 582
N +Q S+S
Sbjct: 204 NLMQTTSMS 212
>gi|255931513|ref|XP_002557313.1| Pc12g04440 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581932|emb|CAP80071.1| Pc12g04440 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 352
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 113/239 (47%), Gaps = 42/239 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP ++IVGN + V++L ++G + I+S
Sbjct: 28 LPWVEKYRPIFLDDIVGNTETVERLKI-------------IAKDGNMPH-------VIIS 67
Query: 404 GSPGMGKTTAAKLVC-QMLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ + Q+LG +E+NASD RG + N IK
Sbjct: 68 GMPGIGKTTSVLCLARQLLGDAYKEAVLELNASDERGIDVVR----------NRIKGFAQ 117
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+ + + +H ++I+DE D M+AG + + + I S CN + ++ +
Sbjct: 118 KKV---TLPQGRHK--LVILDEADSMTAGAQQALRRTM-EIYSSTTRFAFACN-QSNKII 170
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ L + C+ LR+ + ++ KRLMQI AE ++ +E + L GD+R AIN LQ
Sbjct: 171 EPLQSRCAILRYARLTDAQVVKRLMQICEAEKVQHSEDGIAALVFSAEGDMRQAINNLQ 229
>gi|5263320|gb|AAD41422.1|AC007727_11 Similar to gb|M87339 replication factor C, 37-kDa subunit from Homo
sapiens and is a member of PF|00004 ATPases associated
with various cellular activities [Arabidopsis thaliana]
Length = 319
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 119/255 (46%), Gaps = 44/255 (17%)
Query: 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK 398
+ QSS W EKYRPK ++ +++V+ L T T + +
Sbjct: 4 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVL-------------TNTLQTADCPH------ 44
Query: 399 AAILSGSPGMGKTTAAKLVC-QMLG-----FQAIEVNASDSRGKADAKISKGIGGSNANS 452
+ G PG GKTT A + Q+ G + +E+NASD RG +
Sbjct: 45 -MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR----------TK 93
Query: 453 IKELVSNEALSANMDRSKHPK---TVLIMDEVDGMSAGDRGGIADLIASI-KISKIPIIC 508
IK+ + A+ +N +S +P ++I+DE D M+ + + + + K+++ IC
Sbjct: 94 IKDFAA-VAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 152
Query: 509 ICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGD 568
+ S+ ++ L + C+ RF+ ++ ++ R++ I N EGL ++ AL L+ GD
Sbjct: 153 ---NYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGD 209
Query: 569 IRMAINQLQYMSLSL 583
+R AI LQ + L +
Sbjct: 210 LRRAITYLQVVPLEV 224
>gi|123493043|ref|XP_001326199.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121909110|gb|EAY13976.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 160/362 (44%), Gaps = 69/362 (19%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAIL 402
+L W EKYRPK ++IV ++ VK L T L+TG + I
Sbjct: 7 NLPWVEKYRPKNLDDIVQQEEAVKALKTT--------LETGDLPH------------LIF 46
Query: 403 SGSPGMGKTTAAKLVCQMLG-----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
G PG GKT+ A +C+ L + E+NASD RG + +S+KE
Sbjct: 47 HGPPGTGKTSLALALCRSLFGEDFRLRVKELNASDERGIDAVR----------SSVKEFA 96
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK-ISKIPIICICNDRYSQ 516
S + K P ++I+DE D M++ + + +I + +++ IIC + S+
Sbjct: 97 -----SLAVPNGKIPFKIVILDEADSMTSAAQNALRRIIETYSAVTRFIIIC---NYVSK 148
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVN-EIALEELADRVNGDIRMAINQ 575
+ +++ C+ RF+ + I +RL +I + + L V+ E E L D GD+R AI
Sbjct: 149 IIDPILSRCAKFRFKPLDRPAIIQRLHKIFDDQNLSVDKEETFETLVDISGGDLRKAITF 208
Query: 576 LQYMSLSLSVIKYDDIRQRLLSS----AKDEDISPF----TAVDKLFGFNGGKLRMDERI 627
Q S + + I+ I +++S A D+ + + D N +
Sbjct: 209 AQ--SAASTCIETRKITSEIITSISGAANPSDVENYFHTCLSADWDTIENATTDLVYAGY 266
Query: 628 DLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
D+S L+ L+++ N I E K+ LI + A+ +DG I N R + Q+
Sbjct: 267 DISQIFEILISLIVKSNEI---------PEAKKPQLILKIAQ--ADGSIIN---RADPQF 312
Query: 688 QL 689
QL
Sbjct: 313 QL 314
>gi|448524726|ref|XP_003869003.1| Rfc4 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380353356|emb|CCG22866.1| Rfc4 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 320
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 117/240 (48%), Gaps = 43/240 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP ++IVGN++ +++L + ++G N I+S
Sbjct: 7 LPWVEKYRPHVLDDIVGNEETIERLKVIV-------------QDGNMPN-------MIIS 46
Query: 404 GSPGMGKTTAAK-LVCQMLG----FQA-IEVNASDSRGKADAKISKGIGGSNANSIKELV 457
G PG+GKTT+ L ++LG QA +E+NASD RG + N IK+
Sbjct: 47 GLPGIGKTTSIHCLAYELLGKEHYHQATLELNASDDRGIDVVR----------NKIKQFA 96
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQK 517
+ +S R+K ++I+DE D M+ G + + + I + CN + S+
Sbjct: 97 QTK-ISLPPGRTK----IIILDEADSMTPGAQQALRRTM-EIYSNTTRFAFACN-QSSKI 149
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
++ L + C+ LR+ K +E+ KRL+ I E ++ N L+ L GD+R AIN +Q
Sbjct: 150 IEPLQSRCAILRYNKLSDEEVLKRLLDIIKLENVQYNNEGLQALIFSAEGDMRQAINNMQ 209
>gi|325958394|ref|YP_004289860.1| replication factor C small subunit [Methanobacterium sp. AL-21]
gi|325329826|gb|ADZ08888.1| Replication factor C small subunit [Methanobacterium sp. AL-21]
Length = 347
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 48/239 (20%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRP+T +E+VG + + +L ++ N L + +G
Sbjct: 31 WVEKYRPQTLDEVVGQEHTILRLKRYVKEGNMPNL--------------------MFTGP 70
Query: 406 PGMGKTTAA-KLVCQMLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE 460
G+GKTT + L +MLG +E+NASD+RG + N IK +
Sbjct: 71 AGVGKTTTSIALAKEMLGEYWRQNFLELNASDARGIDTVR----------NDIKSFCRLK 120
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIA-DLIASIKISKIPIICICNDRYSQKL- 518
A+ + P ++ +DEVD M+ + + ++ K S I CN YS K+
Sbjct: 121 AVGS-------PFRIIFLDEVDNMTKDAQHALRREMEMYTKTS--SFILSCN--YSSKII 169
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ + C+ RF + +I KRL IA AEGL+++ A+E + GD+R A+N LQ
Sbjct: 170 DPIQSRCAIFRFVPVKGHQIIKRLEYIAQAEGLKIDIAAIESIVYFAEGDMRRAVNILQ 228
>gi|408397489|gb|EKJ76631.1| hypothetical protein FPSE_03181 [Fusarium pseudograminearum CS3096]
Length = 354
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 118/253 (46%), Gaps = 42/253 (16%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP +++VGN + V++L R G + I+S
Sbjct: 33 LPWVEKYRPVFLDDVVGNTETVERLKI-------------IAREGNMPH-------VIIS 72
Query: 404 GSPGMGKTTAAKLVC-QMLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ + Q+LG +E+NASD RG + N IK +
Sbjct: 73 GMPGIGKTTSVLCLARQLLGDSYKEAVLELNASDERGIDVVR----------NRIKGF-A 121
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+ ++ + R K ++I+DE D M++G + + + I + CN + ++ +
Sbjct: 122 QKKVTLPVGRHK----LVILDEADSMTSGAQQALRRTM-EIYSNTTRFAFACN-QSNKII 175
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ L + C+ LR+ K ++ KRLMQI AE +E ++ L L GD+R AIN LQ
Sbjct: 176 EPLQSRCAILRYAKLTDAQVLKRLMQIIEAEKVEFSDDGLAALVFSAEGDMRQAINNLQS 235
Query: 579 MSLSLSVIKYDDI 591
+ D++
Sbjct: 236 TFAGFGFVSGDNV 248
>gi|347532054|ref|YP_004838817.1| DNA ligase [Roseburia hominis A2-183]
gi|345502202|gb|AEN96885.1| DNA ligase [Roseburia hominis A2-183]
Length = 667
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
Query: 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGA 255
E E + G T V++GTL +L R+EA+ LI+R+GG+V+GSVSKKT+Y+L E AG+
Sbjct: 583 EESETVDSVISGKTLVLTGTLPTLGRKEAQTLIERYGGKVSGSVSKKTDYVLAGES-AGS 641
Query: 256 KSTKAKELGTPFLTEDGLFDMIRASK 281
K TKA+ELG ++ED L+DM++ +
Sbjct: 642 KLTKAQELGIRVISEDELYDMLQIER 667
>gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1]
gi|150421641|sp|Q9YBS7.3|RFCS_AERPE RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|116062816|dbj|BAA80521.2| replication factor C small subunit [Aeropyrum pernix K1]
Length = 325
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 113/240 (47%), Gaps = 45/240 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP++ ++IV + +V++L ++ N L + +
Sbjct: 7 MLWVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHL--------------------LFA 46
Query: 404 GSPGMGKTTAAKLVCQMLGFQ-----AIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG GKTTAA + L + +E+NASD RG N I+E V
Sbjct: 47 GPPGTGKTTAAHALAHDLFGENYRQYMLELNASDERG--------------INVIREKVK 92
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY-SQK 517
A S + P ++++DE D M++ + + L+ + S I I N Y S+
Sbjct: 93 EFARSRT--PPEIPFKIVLLDEADNMTSDAQQALRRLM-ELYSSVTRFILIAN--YPSKI 147
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
+ + + C+ RF+ KQ++ +RL IA EG++ E AL+ + + GD+R AIN LQ
Sbjct: 148 IDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDYEEEALDAIYEISEGDMRKAINVLQ 207
>gi|46125645|ref|XP_387376.1| hypothetical protein FG07200.1 [Gibberella zeae PH-1]
Length = 354
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 118/253 (46%), Gaps = 42/253 (16%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP +++VGN + V++L R G + I+S
Sbjct: 33 LPWVEKYRPVFLDDVVGNTETVERLKI-------------IAREGNMPH-------VIIS 72
Query: 404 GSPGMGKTTAAKLVC-QMLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ + Q+LG +E+NASD RG + N IK +
Sbjct: 73 GMPGIGKTTSVLCLARQLLGDSYKEAVLELNASDERGIDVVR----------NRIKGF-A 121
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+ ++ + R K ++I+DE D M++G + + + I + CN + ++ +
Sbjct: 122 QKKVTLPVGRHK----LVILDEADSMTSGAQQALRRTM-EIYSNTTRFAFACN-QSNKII 175
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ L + C+ LR+ K ++ KRLMQI AE +E ++ L L GD+R AIN LQ
Sbjct: 176 EPLQSRCAILRYAKLTDAQVLKRLMQIIEAEKVEFSDDGLAALVFSAEGDMRQAINNLQS 235
Query: 579 MSLSLSVIKYDDI 591
+ D++
Sbjct: 236 TFAGFGFVSGDNV 248
>gi|323508283|emb|CBQ68154.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 341
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 117/254 (46%), Gaps = 44/254 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP N++VGN+ + +L QND + ++S
Sbjct: 20 LPWVEKYRPMRLNDVVGNKDTIDRLKV-------------------IQNDGNCPHL-LIS 59
Query: 404 GSPGMGKTTAAKLVCQMLGFQA-----IEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ + + L A +E+NASD RG + N IK
Sbjct: 60 GLPGIGKTTSVLCLARALLGDAYKEGVLELNASDERGVDVVR----------NKIKTFAQ 109
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKI-SKIPIICICNDRYSQK 517
+ ++ +H ++I+DE D M+ + L +++I S C ++ ++
Sbjct: 110 KKV---SLPPGRH--KIIILDEADSMTPAAQQA---LRRTMEIYSNTTRFCFACNQSNKI 161
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
++ + + C+ LR+ K R ++I KRL++I E +E ++ L + GD+R AIN LQ
Sbjct: 162 IEPIQSRCAILRYGKVRDEQILKRLLEICEMEAVEYSDEGLAAIIFTTEGDMRQAINNLQ 221
Query: 578 YMSLSLSVIKYDDI 591
L + D++
Sbjct: 222 STWTGLGFVSPDNV 235
>gi|452986023|gb|EME85779.1| hypothetical protein MYCFIDRAFT_41166 [Pseudocercospora fijiensis
CIRAD86]
Length = 353
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 123/273 (45%), Gaps = 48/273 (17%)
Query: 329 ASPAKRKGQNIQQSSLT----WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGT 384
AS KG N +S T W EKYRP ++IVGN + +++L
Sbjct: 10 ASTNGTKGHNTHGTSTTYELPWVEKYRPVFLDDIVGNTETIERLKI-------------I 56
Query: 385 KRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVC-QMLG----FQAIEVNASDSRGKADA 439
++G + I+SG PG+GKTT+ + Q+LG +E+NASD RG
Sbjct: 57 AKDGNMPH-------VIISGMPGIGKTTSVLCLARQLLGDAYKEAVLELNASDERGIDVV 109
Query: 440 KISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI 499
+ N IK + + ++ R K ++I+DE D M++G + + +
Sbjct: 110 R----------NRIKGF-AQKKVTLPAGRQK----IVILDEADSMTSGAQQALRRTMEIY 154
Query: 500 K-ISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIAL 558
++ C +++ + L+S C+ LR+ + ++ KRL QI AE +E ++ +
Sbjct: 155 SGTTRFAFACNLSNKIIEPLQS---RCAILRYSRLTDAQVVKRLYQICEAEKVEYSDDGI 211
Query: 559 EELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
L GD+R AIN LQ + D++
Sbjct: 212 AALVFSAEGDMRQAINNLQSTHAGFGFVNGDNV 244
>gi|307596342|ref|YP_003902659.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307551543|gb|ADN51608.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 342
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 43/241 (17%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
+ L W EKYRP ++I+ +++ +++ ++FL TG + +
Sbjct: 4 AELIWVEKYRPSRIDDIIDQEEVKERI--------KQFLKTGNMPH------------ML 43
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQA-----IEVNASDSRGKADAKISKGIGGSNANSIKEL 456
G PG GKTT A + + L A +E+NASD RG +I+E
Sbjct: 44 FYGPPGTGKTTMALAIARELYGDAWRENVLELNASDERG--------------ITTIRER 89
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQ 516
V A +A M K P ++I+DE D M++ + + ++ + + I I N S+
Sbjct: 90 VKEFARTAPM--GKAPYKLVILDEADNMTSDAQQALRRMM-EMYANVTRFILIAN-YVSR 145
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
+ + + C+ RF K + RL +IA+ EG++V ALE + D GD+R AIN L
Sbjct: 146 IIDPIQSRCAMFRFSPLPKDAVLGRLREIASKEGVKVTNEALEAIWDVSQGDMRKAINTL 205
Query: 577 Q 577
Q
Sbjct: 206 Q 206
>gi|297842539|ref|XP_002889151.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis
lyrata subsp. lyrata]
gi|297334992|gb|EFH65410.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1154
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 125/270 (46%), Gaps = 39/270 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK-------FLDTGTKRN-----GKKQND 393
W +KY+P++ +E+ GN + VK ++ WL W E+ FL + ++ ++D
Sbjct: 317 WVDKYQPRSASEVCGNTESVKVMNEWLRQWQERGFQPDKDFLSSDEDKSQDADYNCSESD 376
Query: 394 ASAE---------KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR---------G 435
+E ++ G G GK+ A + GF+ +E N S+ R G
Sbjct: 377 TDSENIGAEDRLKNVLLIVGPAGSGKSAAIHACAKEQGFKILESNTSECRSGTVVRQKFG 436
Query: 436 KA--DAKISKGI-----GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD 488
+A +S+ + ++ N +++++ + + + K +++ ++VD A D
Sbjct: 437 EALKSYSLSRSLDPLFNSCTDGNGVEDVMEVVPILHIQNDGANLKPLILFEDVDVCFAED 496
Query: 489 RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
RG ++ + +K P++ ND+ +L ++ F P K+E+ L + A
Sbjct: 497 RGLVSAIQQIAAKAKGPVVLTTNDKNHGLPDNLERI--EIYFSLPSKEELFSHLSLVCAA 554
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQY 578
E ++VN +L+++ GDIR AI QLQ+
Sbjct: 555 EEVKVNRGSLDQMTTSCGGDIRKAIMQLQF 584
>gi|190349037|gb|EDK41611.2| hypothetical protein PGUG_05709 [Meyerozyma guilliermondii ATCC
6260]
Length = 796
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 143/318 (44%), Gaps = 56/318 (17%)
Query: 347 TEKYRPKTPNEI--VGNQQLVKQLHTWLAHWNEKFL---------DTGTKRNGKKQNDAS 395
TEKY+P + ++ +GN + + + WL W+ T R+ +
Sbjct: 155 TEKYKPASFVDLCSLGNDKQYRMVLQWLKKWSPMVFGEPIPAPESKTTYNRDFEDPYGRP 214
Query: 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR------GKADAKISKGIGGSN 449
+K ++ G PG+GKT AA + + + + E+NA++S ++D K S+G
Sbjct: 215 HKKIMLIHGPPGIGKTAAAHVFARQMKYNVQEINAANSMDINQSIAESDKKGSRGAYA-- 272
Query: 450 ANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK--------- 500
S+K ++N AL++N K T +I+DE+D ++ + I +++ I
Sbjct: 273 --SLKLKITN-ALTSNSVVGKGKPTCIIIDEID--TSPNSNEIIRVLSDIVRSDGRSNKS 327
Query: 501 -----ISKIPIICICNDRYSQK----LKSLVNYCSDLRFRKPRKQEIAKR---------- 541
+ + PIICI N YS + + L + + F+KP +K+
Sbjct: 328 SKKPFLMQRPIICIANSNYSTRQGNNMDVLRSISESVAFKKPNISSGSKKSNGNALKNFK 387
Query: 542 --LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSA 599
L+ IA E L ++ A+ E+ + GD+R +N +Q+ S L+V + +
Sbjct: 388 EHLIHIAKKEDLNLDYRAIGEIVEICEGDMRACLNYIQFNSQKLNVPIME--TKPGGGPN 445
Query: 600 KDEDISPFTAVDKLFGFN 617
KD DIS F V+ LF N
Sbjct: 446 KDSDISWFALVNLLFKRN 463
>gi|50304813|ref|XP_452362.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641495|emb|CAH01213.1| KLLA0C03718p [Kluyveromyces lactis]
Length = 320
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 114/242 (47%), Gaps = 48/242 (19%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP +IVGN+ V++L T A N + I+S
Sbjct: 9 LPWVEKYRPHLLKDIVGNEDTVQRLQTIAADGNMPHM--------------------IIS 48
Query: 404 GSPGMGKTTAAK-LVCQMLG---FQAI-EVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ L ++LG QA+ E+NASD RG + N IK
Sbjct: 49 GLPGIGKTTSIHCLAHELLGDAYSQAVLELNASDDRGIEVVR----------NQIKHFAQ 98
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGI---ADLIASIKISKIPIICICNDRYS 515
+ + KH ++I+DE D M++G + + +L ++ ++ C +++
Sbjct: 99 KKC---TLPAGKHK--IIILDEADSMTSGAQQALRRTMELYSNT--TRFAFACNQSNKII 151
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ L+S C+ LR+ K +++ KRL++I E ++ LE + GD+R AIN
Sbjct: 152 EPLQS---RCAILRYSKLTDEQVLKRLLEIIKLEDVQYTNDGLEAIIFTAEGDMRQAINN 208
Query: 576 LQ 577
LQ
Sbjct: 209 LQ 210
>gi|302909278|ref|XP_003050037.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730974|gb|EEU44324.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 354
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 128/295 (43%), Gaps = 52/295 (17%)
Query: 302 LPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGN 361
+P + P+ S SA KA A A G + L W EKYRP +++VGN
Sbjct: 1 MPTQKPEERGESSNSASKA--------ALTASTNGNS--SYELPWVEKYRPIFLDDVVGN 50
Query: 362 QQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVC-QM 420
+ +++L N + I+SG PG+GKTT+ + Q+
Sbjct: 51 TETIERLKIIAKEGNMPHV--------------------IISGMPGIGKTTSVLCLARQL 90
Query: 421 LGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476
LG +E+NASD RG + N IK + + +H ++
Sbjct: 91 LGESYKEAVLELNASDERGIDVVR----------NRIKGFAQKKV---TLPAGRHK--LV 135
Query: 477 IMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQ 536
I+DE D M++G + + + I + CN + ++ ++ L + C+ LR+ K
Sbjct: 136 ILDEADSMTSGAQQALRRTM-EIYSNTTRFAFACN-QSNKIIEPLQSRCAILRYAKLTDA 193
Query: 537 EIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
++ KRLMQI AE +E ++ L L GD+R AIN LQ + D++
Sbjct: 194 QVVKRLMQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNV 248
>gi|294920987|ref|XP_002778643.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239887323|gb|EER10438.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 277
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 114/253 (45%), Gaps = 40/253 (15%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKA 399
Q+ ++ W EKYRP E+ ++V L + N L
Sbjct: 19 QERAVPWVEKYRPARVEELAHQPEVVGALKEAVGTGNLPHL------------------- 59
Query: 400 AILSGSPGMGKTTAA-KLVCQMLGFQ-----AIEVNASDSRGKADAKISKGIGGSNANSI 453
+ G PG GKT+A L ++ G + +E+NASD RG + + +
Sbjct: 60 -LFYGPPGNGKTSAILALARELFGPELWRDRVLELNASDERGIDVIR----------DKV 108
Query: 454 KEL--VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICN 511
K+ +S A++ +S P ++++DE D M+ + + +I + +++ CI
Sbjct: 109 KKFAQISVRAVAPGSGKSAPPFKIIVLDEADSMTKDAQAALRRIIENY--TQVTRFCIIC 166
Query: 512 DRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571
+ S+ ++ L + C+ RF + RL IAN EG+++ A+E L NGD+R
Sbjct: 167 NYVSRIIEPLQSRCAKFRFEPLSDESQRGRLEYIANCEGVKMANGAMEALLGTSNGDLRS 226
Query: 572 AINQLQYMSLSLS 584
AIN LQ +S LS
Sbjct: 227 AINTLQMVSSCLS 239
>gi|156064851|ref|XP_001598347.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154691295|gb|EDN91033.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 333
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 118/260 (45%), Gaps = 46/260 (17%)
Query: 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK 398
+ L W EKYRP +++VGN + +++L ++G +
Sbjct: 28 VTNYELPWVEKYRPVFLDDVVGNTETIERLKI-------------IAKDGNMPH------ 68
Query: 399 AAILSGSPGMGKTTAAKLVC---QMLG----FQAIEVNASDSRGKADAKISKGIGGSNAN 451
I+SG PG+GKTT+ ++C Q+LG +E+NASD RG + N
Sbjct: 69 -VIISGMPGIGKTTS--VLCLARQLLGDSYKEAVLELNASDERGIDVVR----------N 115
Query: 452 SIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICN 511
IK + + +H ++I+DE D M++G + + + I S CN
Sbjct: 116 RIKGFAQKKV---TLPAGRHK--LVILDEADSMTSGAQQALRRTM-EIYSSTTRFAFACN 169
Query: 512 DRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571
++ ++ L + C+ LR+ + ++ KRL+QI AE +E +E L L GD+R
Sbjct: 170 QS-NKIIEPLQSRCAILRYARLTDAQVVKRLLQIIEAEKVEYSEDGLAALVFSAEGDMRQ 228
Query: 572 AINQLQYMSLSLSVIKYDDI 591
AIN LQ + D++
Sbjct: 229 AINNLQSTFAGFGFVNGDNV 248
>gi|358389695|gb|EHK27287.1| hypothetical protein TRIVIDRAFT_82171 [Trichoderma virens Gv29-8]
Length = 357
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 117/253 (46%), Gaps = 42/253 (16%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP +++VGN + +++L K K+ N I+S
Sbjct: 33 LPWVEKYRPVFLDDVVGNTETIERL----------------KIIAKEGNMPHV----IIS 72
Query: 404 GSPGMGKTTAAKLVC-QMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ + Q+LG +E+NASD RG + N IK
Sbjct: 73 GMPGIGKTTSVLCLARQLLGESYKEAVLELNASDERGIDVVR----------NRIKGFAQ 122
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+ + +H ++I+DE D M++G + + + I + CN + ++ +
Sbjct: 123 KKV---TLPAGRH--KLVILDEADSMTSGAQQALRRTM-EIYSNTTRFAFACN-QSNKII 175
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ L + C+ LR+ K +++ KRLMQI AE +E ++ L L GD+R AIN LQ
Sbjct: 176 EPLQSRCAILRYAKLTDEQVVKRLMQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQS 235
Query: 579 MSLSLSVIKYDDI 591
+ D++
Sbjct: 236 TWAGFGFVSGDNV 248
>gi|154322657|ref|XP_001560643.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|347837173|emb|CCD51745.1| similar to replication factor C subunit [Botryotinia fuckeliana]
Length = 355
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 131/292 (44%), Gaps = 53/292 (18%)
Query: 305 KSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL 364
K+P+ E+ +++A KA K + L W EKYRP +++VGN +
Sbjct: 5 KAPEVGESSTSAAKKA-----------LKANTNGVTNYELPWVEKYRPVFLDDVVGNTET 53
Query: 365 VKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVC-QMLG- 422
+++L ++G + I+SG PG+GKTT+ + Q+LG
Sbjct: 54 IERLKI-------------IAKDGNMPH-------VIISGMPGIGKTTSVLCLARQLLGD 93
Query: 423 ---FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMD 479
+E+NASD RG + N IK + + +H ++I+D
Sbjct: 94 SYKEAVLELNASDERGIDVVR----------NRIKGFAQKKV---TLPAGRHK--LVILD 138
Query: 480 EVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIA 539
E D M++G + + + I S CN + ++ ++ L + C+ LR+ + Q++
Sbjct: 139 EADSMTSGAQQALRRTM-EIYSSTTRFAFACN-QSNKIIEPLQSRCAILRYARLTDQQVV 196
Query: 540 KRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591
KRL+QI E +E ++ L L GD+R AIN LQ ++ D++
Sbjct: 197 KRLLQIIETEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFGLVNGDNV 248
>gi|403217950|emb|CCK72442.1| hypothetical protein KNAG_0K00740 [Kazachstania naganishii CBS
8797]
Length = 319
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 49/243 (20%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP ++IVGN+ +++L + N + I+S
Sbjct: 7 LPWVEKYRPHKLDDIVGNEDTIERLKEIVKDGNMPHM--------------------IIS 46
Query: 404 GSPGMGKTTAAKLVC------QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELV 457
G PG+GKTT+ + + ++LG +E+NASD RG + N IK
Sbjct: 47 GLPGIGKTTSIQCLANEMLGEKLLGSAVLELNASDDRGIDVVR----------NQIKHFA 96
Query: 458 SNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGI---ADLIASIKISKIPIICICNDRY 514
+ ++ KH ++I+DE D M++G + + +L ++ ++ C +++
Sbjct: 97 Q---VKCHLPPGKHK--IVILDEADSMTSGAQQALRRTMELYSNT--TRFAFACNQSNKI 149
Query: 515 SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAIN 574
+ L+S C+ LR+ K +++ KRL+QI E ++ LE + GD+R AIN
Sbjct: 150 IEPLQS---RCAILRYSKLNDEQVLKRLLQIIKLEDVQYTNDGLEAIIFTAEGDMRQAIN 206
Query: 575 QLQ 577
LQ
Sbjct: 207 NLQ 209
>gi|425442460|ref|ZP_18822703.1| DNA ligase [Microcystis aeruginosa PCC 9717]
gi|389716514|emb|CCH99265.1| DNA ligase [Microcystis aeruginosa PCC 9717]
Length = 669
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELG 264
L G TFVI+GTL +L+REEA++LI++ GG+VTGSVSKKT+YL+ E AG+K KA ELG
Sbjct: 596 LAGKTFVITGTLPTLKREEAKELIEKAGGKVTGSVSKKTDYLVLGEA-AGSKLEKALELG 654
Query: 265 TPFLTEDGLFDMIRA 279
LTE L ++I+A
Sbjct: 655 ITQLTEAQLLELIKA 669
>gi|297789753|ref|XP_002862810.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis
lyrata subsp. lyrata]
gi|297308545|gb|EFH39068.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis
lyrata subsp. lyrata]
Length = 960
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 125/270 (46%), Gaps = 39/270 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK-------FLDTGTKRN-----GKKQND 393
W +KY+P++ +E+ GN + VK ++ WL W E+ FL + ++ ++D
Sbjct: 115 WVDKYQPRSASEVCGNTESVKVMNEWLRQWQERGFQPDKDFLSSDEDKSQDADYNCSESD 174
Query: 394 ASAE---------KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR---------G 435
+E ++ G G GK+ A + GF+ +E N S+ R G
Sbjct: 175 TDSENIGAEDRLKNVLLIVGPAGSGKSAAIHACAKEQGFKILESNTSECRSGTVVRQKFG 234
Query: 436 KA--DAKISKGI-----GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD 488
+A +S+ + ++ N +++++ + + + K +++ ++VD A D
Sbjct: 235 EALKSYSLSRSLDPLFNSCTDGNGVEDVMEVVPILHIQNDGANLKPLILFEDVDVCFAED 294
Query: 489 RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
RG ++ + +K P++ ND+ +L ++ F P K+E+ L + A
Sbjct: 295 RGLVSAIQQIAAKAKGPVVLTTNDKNHGLPDNLERI--EIYFSLPSKEELFSHLSLVCAA 352
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQY 578
E ++VN +L+++ GDIR AI QLQ+
Sbjct: 353 EEVKVNRGSLDQMTTSCGGDIRKAIMQLQF 382
>gi|47213597|emb|CAG07263.1| unnamed protein product [Tetraodon nigroviridis]
Length = 350
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 117/256 (45%), Gaps = 46/256 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP ++IVGN++ V +L + R G N I++
Sbjct: 30 LPWVEKYRPLKLDQIVGNEETVSRLEVF-------------AREGNVPN-------IIIA 69
Query: 404 GSPGMGKTTAAKLVC---QMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
G PG GKTT+ ++C +LG +E+NAS+ R + + N IK
Sbjct: 70 GPPGTGKTTS--ILCLARALLGASMKDAVLELNASNDRHRGIDVVR--------NKIKMF 119
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI-KISKIPIICICNDRYS 515
+ + + +H ++I+DE D M+ G + + ++ K ++ + C +D+
Sbjct: 120 AQQKV---TLPKGRH--KIIILDEADSMTDGAQQALRRIMEIYSKTTRFALACNASDKII 174
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
+ ++S C+ LR+ K +I RL + EGL V+E LE + GD+R A+N
Sbjct: 175 EPIQS---RCAVLRYSKLTDGQILARLQDVVEKEGLSVSEDGLEAVIFTAQGDMRQALNN 231
Query: 576 LQYMSLSLSVIKYDDI 591
LQ + I +++
Sbjct: 232 LQSTNSGFGYINSENV 247
>gi|425444560|ref|ZP_18824607.1| DNA ligase [Microcystis aeruginosa PCC 9443]
gi|389735678|emb|CCI00859.1| DNA ligase [Microcystis aeruginosa PCC 9443]
Length = 669
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELG 264
L G TFVI+GTL +L+REEA++LI++ GG+VTGSVSKKT+YL+ E AG+K KA ELG
Sbjct: 596 LAGKTFVITGTLPTLKREEAKELIEKAGGKVTGSVSKKTDYLVLGEA-AGSKLEKALELG 654
Query: 265 TPFLTEDGLFDMIRA 279
LTE L ++I+A
Sbjct: 655 ITQLTEAQLLELIKA 669
>gi|358401379|gb|EHK50685.1| hypothetical protein TRIATDRAFT_157714 [Trichoderma atroviride IMI
206040]
Length = 357
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 117/253 (46%), Gaps = 42/253 (16%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP +++VGN + +++L K K+ N I+S
Sbjct: 33 LPWVEKYRPVFLDDVVGNTETIERL----------------KIIAKEGNMPHV----IIS 72
Query: 404 GSPGMGKTTAAKLVC-QMLGFQ----AIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ + Q+LG +E+NASD RG + N IK
Sbjct: 73 GMPGIGKTTSVLCLARQLLGESYKEAVLELNASDERGIDVVR----------NRIKGFAQ 122
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+ + +H ++I+DE D M++G + + + I + CN + ++ +
Sbjct: 123 KKV---TLPAGRH--KLVILDEADSMTSGAQQALRRTM-EIYSNTTRFAFACN-QSNKII 175
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ L + C+ LR+ K +++ KRLMQI AE +E ++ L L GD+R AIN LQ
Sbjct: 176 EPLQSRCAILRYAKLTDEQVVKRLMQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQS 235
Query: 579 MSLSLSVIKYDDI 591
+ D++
Sbjct: 236 TWAGFGFVSGDNV 248
>gi|367024189|ref|XP_003661379.1| hypothetical protein MYCTH_2300696 [Myceliophthora thermophila ATCC
42464]
gi|347008647|gb|AEO56134.1| hypothetical protein MYCTH_2300696 [Myceliophthora thermophila ATCC
42464]
Length = 356
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 42/253 (16%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP ++IVGN + V++L R+G + I+S
Sbjct: 32 LPWVEKYRPVFLDDIVGNTETVERLKI-------------IARDGNMPH-------LIIS 71
Query: 404 GSPGMGKTTAAKLVC-QMLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS 458
G PG+GKTT+ + Q+LG +E+NASD RG + + I G +
Sbjct: 72 GMPGIGKTTSVLCLARQLLGDAYKEAVLELNASDERGIE--VVRQRIKGFAQKKV----- 124
Query: 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL 518
+ + +H ++I+DE D M++G + + + I + CN + ++ +
Sbjct: 125 ------TLPQGRH--KIVILDEADSMTSGAQQALRRTM-EIYSNTTRFAFACN-QSNKII 174
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ L + C+ LR+ K ++ KRL+QI AE +E ++ L L GD+R AIN LQ
Sbjct: 175 EPLQSRCAILRYAKLTDAQVVKRLLQIIEAEKVEYSDDGLAALVFTAEGDMRQAINNLQS 234
Query: 579 MSLSLSVIKYDDI 591
+ D++
Sbjct: 235 THAGFGFVSGDNV 247
>gi|166364069|ref|YP_001656342.1| DNA ligase [Microcystis aeruginosa NIES-843]
gi|254781371|sp|B0JTW2.1|DNLJ_MICAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|166086442|dbj|BAG01150.1| DNA ligase [Microcystis aeruginosa NIES-843]
Length = 669
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELG 264
L G TFVI+GTL +L+REEA++LI++ GG+VTGSVSKKT+YL+ E AG+K KA ELG
Sbjct: 596 LAGKTFVITGTLPTLKREEAKELIEKAGGKVTGSVSKKTDYLVLGEA-AGSKLEKALELG 654
Query: 265 TPFLTEDGLFDMIRA 279
LTE L ++I+A
Sbjct: 655 ITQLTEAQLLELIKA 669
>gi|119196513|ref|XP_001248860.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|392861939|gb|EAS37458.2| replication factor C subunit 4 [Coccidioides immitis RS]
Length = 352
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 46/255 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRP +++VGN + +++L R+G + I+S
Sbjct: 28 LPWVEKYRPVFLDDVVGNTETIERLKI-------------IARDGNMPH-------VIIS 67
Query: 404 GSPGMGKTTAAKLVC---QMLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
G PG+GKTT+ ++C QMLG +E+NASD RG + N IK
Sbjct: 68 GMPGIGKTTS--ILCLARQMLGDVYKEAVLELNASDERGIDVVR----------NRIKGF 115
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQ 516
+ + KH ++I+DE D M++G + + + I + CN + ++
Sbjct: 116 AQKKV---TLPPGKH--KLVILDEADSMTSGAQQALRRTM-EIYSATTRFAFACN-QSNK 168
Query: 517 KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576
++ L + C+ LR+ + ++ KRLMQI AE ++ ++ + L GD+R AIN L
Sbjct: 169 IIEPLQSRCAILRYSRLTDAQVVKRLMQICEAEDVKYSDDGIAALVFSAEGDMRQAINNL 228
Query: 577 QYMSLSLSVIKYDDI 591
Q + D++
Sbjct: 229 QSTWAGFGFVSGDNV 243
>gi|300794517|ref|NP_001179389.1| chromosome transmission fidelity protein 18 homolog [Bos taurus]
gi|296473567|tpg|DAA15682.1| TPA: CTF18, chromosome transmission fidelity factor 18 homolog [Bos
taurus]
Length = 978
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 101/235 (42%), Gaps = 45/235 (19%)
Query: 371 WLAHWN--EKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428
W +H E+ L+ +G+ + +K A+L G PG+GKTT A ++ + G+ +E+
Sbjct: 345 WKSHEQVLEEMLEAELDPSGRPR-----QKVALLCGPPGLGKTTLAHVIARHAGYCVVEM 399
Query: 429 NASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG----- 483
NASD R + I+ E++ R L++DE+DG
Sbjct: 400 NASDDRSPEAFR----------TRIEAATQMESVLGAGGRP----NCLVIDEIDGAPTAA 445
Query: 484 ----MSAGDR---------------GGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+S DR GG A + PIICICND ++ L+ L
Sbjct: 446 INVLLSVLDRKGPQQAGPGGPSVPTGGGRRRRAEAGLLMRPIICICNDPFAPSLRQLKQQ 505
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L F + +RL +I+ G+ + AL L ++ + DIR IN LQ++
Sbjct: 506 ALLLHFPPTLPSRLMQRLQEISLRRGMRADPGALAALCEKTDNDIRACINALQFL 560
>gi|422304857|ref|ZP_16392196.1| DNA ligase [Microcystis aeruginosa PCC 9806]
gi|389789917|emb|CCI14135.1| DNA ligase [Microcystis aeruginosa PCC 9806]
Length = 669
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Query: 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELG 264
L G TFVI+GTL +L+REEA++LI++ GG+VTGSVSKKT+YL+ E AG+K KA ELG
Sbjct: 596 LAGKTFVITGTLPTLKREEAKELIEKAGGKVTGSVSKKTDYLVLGEA-AGSKLEKALELG 654
Query: 265 TPFLTEDGLFDMIRA 279
LTE L ++I+A
Sbjct: 655 ITQLTEAQLLELIKA 669
>gi|145552042|ref|XP_001461697.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429533|emb|CAK94324.1| unnamed protein product [Paramecium tetraurelia]
Length = 384
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 44/243 (18%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAA 400
+++L W EKYRPKT +E+ GN +V +L + G N
Sbjct: 2 ENNLIWLEKYRPKTLDEVHGNSDIVDKLR-------------AIAKMGNLPN-------I 41
Query: 401 ILSGSPGMGKTTAAKLVC-QMLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKE 455
IL G PG+GKT++ + Q+LG +E+NASD RG +++E
Sbjct: 42 ILVGPPGIGKTSSVLCLARQILGDSIKESVLELNASDDRG--------------IETVRE 87
Query: 456 LVSNEALS-ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY 514
+ A N+ +H ++I+DE D ++ G + + +I+ S + CND
Sbjct: 88 QIKGFAQKKVNLQEGQHK--IVILDEADSLTEGAQQALRMIISDYSTST-RFVLSCNDS- 143
Query: 515 SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAIN 574
++ + ++ + C LRF + ++EI RL++I + E + + L+ L GD+R AIN
Sbjct: 144 TKLIDAIQSRCCILRFNRLGEKEIRDRLLEIISQESVTYTKDGLDALTFTAEGDMRQAIN 203
Query: 575 QLQ 577
LQ
Sbjct: 204 NLQ 206
>gi|383858073|ref|XP_003704527.1| PREDICTED: replication factor C subunit 2-like [Megachile
rotundata]
Length = 351
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 119/251 (47%), Gaps = 44/251 (17%)
Query: 333 KRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQN 392
K+K ++++ + L W EKYRP+ ++IVGN+ V +L + +NG N
Sbjct: 25 KKKQKDLKTAHLPWIEKYRPQVFSDIVGNEDTVSRLSVF-------------AKNGNCPN 71
Query: 393 DASAEKAAILSGSPGMGKTTAAKLVCQML---GFQ--AIEVNASDSRGKADAKISKGIGG 447
I++G PG+GKTT + ++L F+ +E+NAS+ RG +
Sbjct: 72 -------IIIAGPPGVGKTTTILCLARILLGPAFKEAVLELNASNDRGIDVVR------- 117
Query: 448 SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI-KISKIPI 506
N IK N+D+ KH ++I+DE D M+ G + + + ++ +
Sbjct: 118 ---NKIKMFAQKR---VNLDKGKHK--IIILDEADSMTDGAQQALRRTMEIYSNTTRFAL 169
Query: 507 ICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN 566
C +++ + ++S C+ LR+ K ++ +++++ E + + LE +
Sbjct: 170 ACNNSEKIIEPIQS---RCAMLRYGKLTDAQVLAKILEVCQKENVSYTDDGLEAIVFTAQ 226
Query: 567 GDIRMAINQLQ 577
GD+R A+N LQ
Sbjct: 227 GDMRQALNNLQ 237
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,489,222,924
Number of Sequences: 23463169
Number of extensions: 566107609
Number of successful extensions: 2242329
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4984
Number of HSP's successfully gapped in prelim test: 9178
Number of HSP's that attempted gapping in prelim test: 2203203
Number of HSP's gapped (non-prelim): 30176
length of query: 790
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 639
effective length of database: 8,816,256,848
effective search space: 5633588125872
effective search space used: 5633588125872
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 81 (35.8 bits)