BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003873
(790 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35251|RFC1_HUMAN Replication factor C subunit 1 OS=Homo sapiens GN=RFC1 PE=1 SV=4
Length = 1148
Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust.
Identities = 245/682 (35%), Positives = 368/682 (53%), Gaps = 75/682 (10%)
Query: 147 TESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLG 206
T++P K+ + + S +P + + ++ R+ P G KE+P+GA +CL
Sbjct: 351 TKTPKKT--KSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLE 408
Query: 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+ D +KS KA LGT
Sbjct: 409 GLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTK 468
Query: 267 FLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKA------ 320
+ EDGL ++IR K+ + + ++K + L + +N++ K +P
Sbjct: 469 IIDEDGLLNLIRTMPGKKSKYEIAVETEMKK-ESKLERTPQKNVQGKRKISPSKKESESK 527
Query: 321 ---PIERMKTVASPAKR-----------------------KGQNIQQSS-------LTWT 347
P + ++A K+ K +N+ S L W
Sbjct: 528 KSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWV 587
Query: 348 EKYRPKTPNEIVG---NQQLVKQLHTWLAHW------NEKFLDTGTKRNGKKQNDASAEK 398
+KY+P + I+G +Q +L WL +W ++K K +GK +D S+ K
Sbjct: 588 DKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSGK--DDGSSFK 645
Query: 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKEL 456
AA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K+ K +++ + N SIK
Sbjct: 646 AALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESL---NNTSIKGF 702
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYS 515
SN A S S K LIMDEVDGM+ DRGGI +LI IK +KIPIIC+CNDR
Sbjct: 703 YSNGAAS-----SVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNH 757
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
K++SLV+YC DLRF++PR ++I +M IA EGL++ A+ E+ N DIR ++
Sbjct: 758 PKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHN 817
Query: 576 LQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSD 633
L + YD + + KD + PF K+F G + + ++ DL D
Sbjct: 818 LSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHD 877
Query: 634 PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
+ PL +QENYI+ +P +AG D K L L++RAA+SI DGD+ + QIR Q W L +
Sbjct: 878 YSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQ 937
Query: 694 SLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSK 753
++ + ++P LM G F F WLGK+S+ GK+ R+++DL H S ++
Sbjct: 938 AIYASVLPGELMRGYM-------TQFPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTY 988
Query: 754 LGRDTLRLDYFSLLLKQLTEPL 775
+ T+ +DY SLL L +PL
Sbjct: 989 SSKRTVNMDYLSLLRDALVQPL 1010
>sp|P35601|RFC1_MOUSE Replication factor C subunit 1 OS=Mus musculus GN=Rfc1 PE=1 SV=2
Length = 1131
Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust.
Identities = 231/637 (36%), Positives = 357/637 (56%), Gaps = 60/637 (9%)
Query: 179 GFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 238
+ ++ R+ P G KE+P+GA +CL GLTFVI+G L+S+ER+EA+ LI+R+GG+VTG+
Sbjct: 378 AYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGN 437
Query: 239 VSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKV 298
VSKKTNYL+ D +KS KA LGT L EDGL D+IR ++ + ++ ++K
Sbjct: 438 VSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGKRSKYEMAAEAEMKKE 497
Query: 299 AASLPKKSPQNIEAKSTSAP----------------KAPIERMKTVASPAKRKGQNIQQS 342
+ L + +N + K +P +P++ +K AS R G +++++
Sbjct: 498 KSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPR-GLDVKET 556
Query: 343 ----------SLTWTEKYRPKTPNEIV---GNQQLVKQLHTWLAHWNEKFLDTGTKRNGK 389
L W +KY+P + I+ G+Q +L WL +W++ + K++
Sbjct: 557 HGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPE--EKKHAA 614
Query: 390 K------QNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--I 441
K ++D S+ KAA+LSG PG+GKTT A LVCQ LG+ +E+NASD+R K K +
Sbjct: 615 KFGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVV 674
Query: 442 SKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIK 500
++ + N SIK ++ A + R LIMDEVDGM+ DRGGI +LI IK
Sbjct: 675 AESL---NNTSIKGFYTSGAAPSVSARH-----ALIMDEVDGMAGNEDRGGIQELIGLIK 726
Query: 501 ISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEE 560
+KIPIIC+CNDR K++SLV+YC DLRF++PR ++I ++ IA EGL++ A+ E
Sbjct: 727 HTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNE 786
Query: 561 LADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNG 618
+ N D+R ++ L + YD + + KD + PF K+F G
Sbjct: 787 IILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEET 846
Query: 619 GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFN 678
+ + ++ DL D + PL +QENY++ +P +AG D K L L++RAA+SI DGD+ +
Sbjct: 847 AHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVD 906
Query: 679 VQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRL 738
QIR Q W L + ++ + ++P LM G F F WLGK+S+ GK+ R+
Sbjct: 907 NQIRSKQNWSLLPTQAIYASVLPGELMRGYM-------TQFPSFPSWLGKHSSTGKHDRI 959
Query: 739 LEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
++DL H S ++ + T+ +DY S + L PL
Sbjct: 960 VQDLSLH--MSLRTYSSKRTVNMDYLSHIRDALVRPL 994
>sp|P35600|RFC1_DROME Replication factor C subunit 1 OS=Drosophila melanogaster GN=Gnf1
PE=1 SV=2
Length = 986
Score = 346 bits (888), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 230/657 (35%), Positives = 335/657 (50%), Gaps = 92/657 (14%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
+ + R + G KE+P+G+PDCL GLTFV++G L+S+EREEAE +IK +GG+V V
Sbjct: 212 YQKYKNRSSCLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVV 271
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR--------------------- 278
KK YL+ E+ K A+EL P L+EDGLFD+IR
Sbjct: 272 GKKLKYLVVGEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGIAKQVKEEKKSPKKEHS 331
Query: 279 ----ASKPMKALAQAESKKSVEKVAASLPKK-------------SPQNIEAKSTSAP--- 318
K +K ++ KK E +K SP+ + K P
Sbjct: 332 SEEKGKKEVKTSRRSSDKKEKEATKLKYGEKHDIAKHKVKEEHTSPKETKDKLNDVPAVT 391
Query: 319 ----KAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQL---VKQLHTW 371
K P + + SP + + + W +K++P + EIVG V +L W
Sbjct: 392 LKVKKEPSSQKEHPPSPRTADLKTLDVVGMAWVDKHKPTSIKEIVGQAGAASNVTKLMNW 451
Query: 372 LAHWNEKFLDTGTKRNGK-----KQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426
L+ W G K+ + K +D S KAA+LSG PG+GKTT A LV + LGF A+
Sbjct: 452 LSKWYVNH--DGNKKPQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATLVVKELGFDAV 509
Query: 427 EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMD---RSKHPKTVLIMDEVDG 483
E NASD+R K K + + L+SN++LS ++ K VLIMDEVDG
Sbjct: 510 EFNASDTRSKRLLK----------DEVSTLLSNKSLSGYFTGQGQAVSRKHVLIMDEVDG 559
Query: 484 MSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRL 542
M+ DRGG+ +LIA IK S IPIIC+CNDR K++SLVNYC DLRF++PR ++I ++
Sbjct: 560 MAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVNYCYDLRFQRPRLEQIKGKI 619
Query: 543 MQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQR--LLSSAK 600
M I E ++++ +EE+ N DIR +IN + +S +D Q+ + K
Sbjct: 620 MSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALLSAK------EDASQKSGQQVATK 673
Query: 601 DEDISPFTAVDKLFGFNGGK-LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
D + P+ V K+F + K + ++ DL D L PL +Q+NY+ P +D
Sbjct: 674 DLKLGPWEVVRKVFTADEHKHMSFADKSDLFFHDYSLAPLFVQQNYLQVLPQGNKKD--- 730
Query: 660 RLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNF 719
L+ +A A+++S GD+ +IR N W L + + S ++P M G G+ N
Sbjct: 731 VLAKVAATADALSLGDLVEKRIRANSAWSLLPTQAFFSSVLPGEHMCGHF----TGQIN- 785
Query: 720 NRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F GWLGKNS GK RL ++LH H + + S+L ++RLDY LL + PL
Sbjct: 786 --FPGWLGKNSKSGKRARLAQELHDHTRVCTSGSRL---SVRLDYAPFLLDNIVRPL 837
>sp|O60182|RFC1_SCHPO Replication factor C subunit 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc1 PE=1 SV=1
Length = 934
Score = 300 bits (767), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 203/596 (34%), Positives = 310/596 (52%), Gaps = 61/596 (10%)
Query: 193 GEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI 252
G K VPEG DCL G++FVI+G L++L R+EA DLIK++GG+VTG+ S +T+++L E+
Sbjct: 229 GSKPVPEGNSDCLSGISFVITGILETLTRQEATDLIKQYGGKVTGAPSVRTDFILLGENA 288
Query: 253 AGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKK--SPQNI 310
K K+ P + EDGLF +I LP +
Sbjct: 289 GPRKVETIKQHKIPAINEDGLFYLI----------------------THLPASGGTGAAA 326
Query: 311 EAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHT 370
+A + + ++TVA + Q S + WT KY P + +I GN+ +V++L
Sbjct: 327 QAAQQKKEQEEKKILETVARMDDSNKKESQPSQI-WTSKYAPTSLKDICGNKGVVQKLQK 385
Query: 371 WLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430
WL +++ + + N + KA +LSG PG+GKTTAA LV ++ G+ +E+NA
Sbjct: 386 WLQDYHK---NRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGYDVLELNA 442
Query: 431 SDSRGK--ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD 488
SD+R K D ++ G +++ S+ +A +M +S+ VLIMDE+DGMS+GD
Sbjct: 443 SDTRSKRLLDEQL---FGVTDSQSLAGYFGTKANPVDMAKSR---LVLIMDEIDGMSSGD 496
Query: 489 RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548
RGG+ L IK S IPIICICNDR KL+ L DLRFR+P + R+M IA
Sbjct: 497 RGGVGQLNMIIKKSMIPIICICNDRAHPKLRPLDRTTFDLRFRRPDANSMRSRIMSIAYR 556
Query: 549 EGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFT 608
EGL+++ A+++L D+R IN L LS S + + + + +S K + P+
Sbjct: 557 EGLKLSPQAVDQLVQGTQSDMRQIINLLSTYKLSCSEMTPQNSQAVIKNSEKHIVMKPWD 616
Query: 609 AVDKLFGFNGG------KLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRD-----E 657
+ +GG K ++++++L +D + L++QENY+N P ++
Sbjct: 617 ICSRY--LHGGMFHPSSKSTINDKLELYFNDHEFSYLMVQENYLNTTPDRIRQEPPKMSH 674
Query: 658 VKRLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGE 716
+K L LI+ AA S SD D+ + I QQ W L + +L SC+ PA+ + G G
Sbjct: 675 LKHLELISSAANSFSDSDLVDSMIHGPQQHWSLMPTHALMSCVRPASFVAG------SGS 728
Query: 717 RNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQL 771
R RF WLG NS K R+L ++ H L +KL LR Y +L + L
Sbjct: 729 RQI-RFTNWLGNNSKTNKLYRMLREIQVHMRLKVSANKLD---LRQHYIPILYESL 780
>sp|Q54MH9|RFC1_DICDI Probable replication factor C subunit 1 OS=Dictyostelium discoideum
GN=rfc1 PE=3 SV=1
Length = 1401
Score = 293 bits (750), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 166/445 (37%), Positives = 245/445 (55%), Gaps = 45/445 (10%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRPK +IVGN + ++ WL WN DAS + A +LS
Sbjct: 849 ILWVEKYRPKVIEDIVGNPGIFQEFGKWLDQWN-----------STAPRDASKKNAVLLS 897
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK-----------ISKGIGGSNANS 452
G PG+GKT+AA L+C+ GF+AIE+NASD+R K++ K I+K G +N ++
Sbjct: 898 GPPGIGKTSAALLICKQKGFEAIELNASDARSKSEIKRLLSGVSDNQNITKFFGTTNQDT 957
Query: 453 IKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICN 511
K++ +N+ + KT +I+DE+DG S DRGGIA++I IK SK+P IC+CN
Sbjct: 958 GKDVQANKKI----------KTAIILDEIDGSSGNSDRGGIAEIIGLIKKSKMPFICLCN 1007
Query: 512 DRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571
D YS K+ SL N+C DL+ RKP +++ RL+ IA EG++V+ +E++ + DIR
Sbjct: 1008 DYYSSKVTSLRNHCMDLKLRKPTLNQVSSRLLAIAKHEGMKVSSYMIEKVYTSSHSDIRQ 1067
Query: 572 AINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSM 631
+IN LQ MS S D++ Q L KD DISPFTA + + + + ++++D
Sbjct: 1068 SINTLQMMSRSKRDYNNDNVTQSL--QEKDFDISPFTAAELILREDNSNI--NKKLDYFF 1123
Query: 632 SDPDLVPLLIQENYINYRPSSAG-RDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLS 690
SD LVPL+IQENY+ RP G + + LI+ AA+++SD D F I + W L
Sbjct: 1124 SDFSLVPLIIQENYLKTRPYGGGSQSKYNDCELISMAADALSDSDQFGRAIGKEMAWNLL 1183
Query: 691 QSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASR 750
+ + SCIIP+ + G F +LGK S K R + +L H ++
Sbjct: 1184 PTYGVTSCIIPSGYIRGSPPMPLS-------FPSYLGKYSNASKQQRFVRELQLHMRSTS 1236
Query: 751 KSKLGRDTLRLDYFSLLLKQLTEPL 775
+ + RD RL Y +L L +PL
Sbjct: 1237 NTFVNRDETRLYYVPMLKHHLIQPL 1261
Score = 90.1 bits (222), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 239
FM R PP+KG K P+G +CL G F++SG +D ER+E D+IKR GG+V S
Sbjct: 617 FMYMNGRPTPPNKGSKPRPQGKENCLRGKVFLVSGVMDCFERDEMHDIIKRWGGKVAKSA 676
Query: 240 SKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAES 291
K NYL+ +D+ K AK++G +TED +MI + P K ++ E+
Sbjct: 677 VKLLNYLVSGKDVGEKKLEGAKKVGAKIITEDEFLEMINKTLP-KPVSTTET 727
>sp|P38630|RFC1_YEAST Replication factor C subunit 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC1 PE=1 SV=1
Length = 861
Score = 283 bits (725), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 203/598 (33%), Positives = 307/598 (51%), Gaps = 51/598 (8%)
Query: 198 PEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKS 257
PEG P+CL GLT V +G L +LER +E L KR+G RVT S+S KT+ ++ ++ K
Sbjct: 151 PEGKPNCLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVLGDEAGPKKL 210
Query: 258 TKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSA 317
K K+L + E+G F + A P A+ ++ EK L ++ NI K
Sbjct: 211 EKIKQLKIKAIDEEG-FKQLIAGMP----AEGGDGEAAEKARRKLEEQ--HNIATKEAEL 263
Query: 318 -PKAPIERMKTVASPAKRKGQNIQQSSLT------WTEKYRPKTPNEIVGNQQLVKQLHT 370
K ER K +A+ + G ++++ ++ WT KY P ++ GN+ V +L
Sbjct: 264 LVKKEEERSKKLAA-TRVSGGHLERDNVVREEDKLWTVKYAPTNLQQVCGNKGSVMKLKN 322
Query: 371 WLAHWNEKFLDTGTKRNGKKQ---NDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427
WLA+W +K+N K + + +AA+L G PG+GKTTAA LV Q LG+ +E
Sbjct: 323 WLANWE------NSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE 376
Query: 428 VNASDSRGKADAKISKGIGGS--NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS 485
NASD R K ++ G+ + N + + NE + N++ KH V+IMDEVDGMS
Sbjct: 377 QNASDVRSKT--LLNAGVKNALDNMSVVGYFKHNEE-AQNLN-GKH--FVIIMDEVDGMS 430
Query: 486 AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQI 545
GDRGG+ L + + P+I ICN+R K++ C D++FR+P I RLM I
Sbjct: 431 GGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTI 490
Query: 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDIS 605
A E +++ ++ L GDIR IN L +S + I +++I + + K+ +
Sbjct: 491 AIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIALK 550
Query: 606 PFTAVDKLF------GFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVK 659
PF K+ ++++I L D D PL+IQENY++ RPS +
Sbjct: 551 PFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPGQ-S 609
Query: 660 RLSLIARAAESISDGDIFNVQIRRNQQ-WQLSQSSSLASCIIPAALMHGQRETLEQGERN 718
L +A AA IS GDI +IR ++Q W L ++ S + PA+ + G G N
Sbjct: 610 HLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAGHM----AGRIN 665
Query: 719 FNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
F WLG+NS K RLL+++H+H L + K+G LRLDY K+L +P
Sbjct: 666 FT---AWLGQNSKSAKYYRLLQEIHYHTRLGTSTDKIG---LRLDYLPTFRKRLLDPF 717
>sp|O26342|RFCL_METTH Replication factor C large subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcL PE=1 SV=1
Length = 479
Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 113/353 (32%), Positives = 171/353 (48%), Gaps = 56/353 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
++WTEKYRP + +E+VGNQ+++ ++ W+ W + GK Q K +L
Sbjct: 1 MSWTEKYRPGSFDEVVGNQKVIAEIKEWIKAW----------KAGKPQ------KPLLLV 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT A ++ + +E+NASD R + S G A++ + L +
Sbjct: 45 GPPGTGKTTLAHIIGKEFS-DTLELNASDRRSQDALMRSAG----EASATRSLFN----- 94
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
H ++I+DEVDG+ DRGG+ + IK S+ P++ ND YS++L+S+
Sbjct: 95 -------HDLKLIILDEVDGIHGNEDRGGVQAINRIIKESRHPMVLTANDPYSKRLQSIK 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
C L RK IA L +I AEG+E + L ELA R GD+R AIN L+ M+
Sbjct: 148 PRCRVLNLRKVHTSSIAAALRRICRAEGIECPDDVLRELAKRSRGDLRSAINDLEAMAEG 207
Query: 583 LSVIKYDDIRQRLLSSA-KDEDISPFTAVDKLF-GFNGGKLRMDERIDLSMSDPDLVPLL 640
+ I + LL KD + F AV + + K+R R+D DP LV
Sbjct: 208 -----EERIGEELLKMGEKDATSNLFDAVRAVLKSRDVSKVREAMRVD---DDPTLVLEF 259
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIF---NVQIRRNQQWQLS 690
I EN E ++ + I+RA + +S DIF V+ R W+ +
Sbjct: 260 IAENVPR---------EYEKPNEISRAYDMLSRADIFFGRAVRTRNYTYWRYA 303
>sp|Q8TZC5|RFCL_METKA Replication factor C large subunit OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rfcL PE=3
SV=1
Length = 510
Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 169/353 (47%), Gaps = 43/353 (12%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP++ E+V + K+L W W + +A +L
Sbjct: 2 VPWVEKYRPRSLKELVNQDEAKKELAAWANEW--------------ARGSIPEPRAVLLH 47
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKT+AA + G+ IE+NASD R + I K +GG++ + ++ EA
Sbjct: 48 GPPGTGKTSAAYALAHDFGWDVIELNASDKRTRN--VIEKIVGGASTSRSLLRMTREAGG 105
Query: 464 ANMDRSKHPKTVLIM-DEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
H VL++ DEVDG+ DRGG+ L +++ ++ P++ + ND + KSL
Sbjct: 106 DYEHVEGHSDRVLVLVDEVDGIDPREDRGGVTALTRAVRQARNPMVLVANDPWVLP-KSL 164
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
+ + FR+ R +I + L +I EG+E E+AL +A R GD+R AIN L+ ++
Sbjct: 165 RDAVRMIEFRRLRVNDIVEALRRICEREGIEYEEVALRRIAKRARGDLRAAINDLEALAR 224
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLR-----MDERIDLSMSDPDL 636
+ DD+ +D++I+ F A+ ++F + R +DE DPD
Sbjct: 225 PTGRVTSDDVEA---LGWRDKEITIFEALGRIFNKPPRQARRALWNLDE-------DPDD 274
Query: 637 VPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
V L I +N A RD + IARA + +S D+F+ + W+
Sbjct: 275 VILWIAQNI-----PRAYRDPEE----IARAYDYLSKADVFSSRAIETGDWRF 318
>sp|A5UMF4|RFCL_METS3 Replication factor C large subunit OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=rfcL PE=3 SV=1
Length = 492
Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 165/337 (48%), Gaps = 52/337 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WT+KYRPKT +E+VGN + + W+ +W + +K +L
Sbjct: 1 MLWTDKYRPKTLDEVVGNNKEKALIQKWVDNWKA----------------GNPQKPLLLV 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A+ + + + IE+NASD R + K + G ++S K L ++
Sbjct: 45 GPPGIGKTTLAQAIAREFS-EYIELNASDKRSQDVIKSTIG----ESSSSKSLFGDDY-- 97
Query: 464 ANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+LI+DEVDG+ DRGG+ + IK +K P+I I ND YS+++ SL
Sbjct: 98 ----------KLLILDEVDGIHGTNDRGGVRAIGDIIKKAKHPMILIANDFYSKRIASLK 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
C L+ K R I K L QIA EG++ N AL+ELA + NGD+R AIN Q ++
Sbjct: 148 TKCDVLKMSKVRSPSINKLLKQIAINEGIKANPAALKELAKKSNGDMRSAINTFQALANQ 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK--LRMDERIDLSMSDPDLVPLL 640
V++ DI + I+ TAV K N K L ++E DP LV
Sbjct: 208 NEVLELSDIENITTKDDRSTIINGVTAVLKSKNPNHVKKALMVEE-------DPTLVMEY 260
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIF 677
I EN R+ K+ I +A E+I+ D++
Sbjct: 261 IAEN--------IPREYTKKKE-IKKAYENIAKADLY 288
>sp|Q58294|RFCL_METJA Replication factor C large subunit OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=rfcL PE=1 SV=1
Length = 516
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 180/354 (50%), Gaps = 52/354 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L+W EKYRPK+ ++ G++++ ++L TW+ E +L T K +L
Sbjct: 2 LSWVEKYRPKSLKDVAGHEKVKEKLKTWI----ESYLKGET------------PKPILLV 45
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT A + GF+ IE+NASD R N+++IK++V + A S
Sbjct: 46 GPPGCGKTTLAYALANDYGFEVIELNASDKR--------------NSSAIKKVVGHAATS 91
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+++ K ++++DEVDG+S D GG+++LI IK +K PII ND Y+ ++SL+
Sbjct: 92 SSIFGKKF---LIVLDEVDGISGKEDAGGVSELIKVIKKAKNPIILTANDAYAPSIRSLL 148
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
Y ++ + K L +IA EGL+V++ L+ +A GD+R AIN L+ ++LS
Sbjct: 149 PYVEVIQLNPVHTNSVYKVLKKIAEKEGLDVDDKTLKMIAQHSAGDLRSAINDLEALALS 208
Query: 583 --LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
LS + Q+L ++ +I F A+ + + +++ + PD+V
Sbjct: 209 GDLSY----EAAQKLPDRKREANI--FDALRVILKTTHYGIATTALMNVDET-PDVVIEW 261
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
I EN P + E +ARA E +S D + ++ R Q + + ++
Sbjct: 262 IAENV----PKEYEKPEE-----VARAFEYLSKADRYLGRVMRRQNYSFWKYAT 306
>sp|A6UWR5|RFCL_META3 Replication factor C large subunit OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=rfcL PE=3 SV=1
Length = 474
Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 127/431 (29%), Positives = 199/431 (46%), Gaps = 68/431 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRPKT +EIVGN ++ ++L W+ E+ L K +L
Sbjct: 1 MNWVEKYRPKTMSEIVGNNKIKEELKNWI----EEILHN------------EIPKPVLLV 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT + GF+ IE+NASD R K I + +GG A+S K + L
Sbjct: 45 GPPGCGKTTLTNALANDYGFELIELNASDKRNKD--IIRQIVGG--ASSSKSITGKRVL- 99
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+++DEVDG+S DRGG++++I IK +K PII ND Y L SL
Sbjct: 100 ------------IVLDEVDGLSGNSDRGGVSEIIKIIKNAKNPIILTANDIYKPSLMSLR 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
C+ ++ I L +I+ EG EV++ L+ +A GD+R AIN L+ +++
Sbjct: 148 TVCNIVKIGSVHTNSIVPVLRRISLKEGFEVDDKILKIIAKHAGGDVRSAINDLESLAMG 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ D++R+ +D D S F A+ +F + ++ DL D V I
Sbjct: 208 -NTFDEDNVREL---PDRDTDKSIFDAIRIIFKTTHYDISLEATRDLK-EDIGTVQEWIA 262
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQ-SSSLASCIIP 701
EN P E K+ I A +++S DIF ++ + Q + L + +S+L S +
Sbjct: 263 ENV----PR-----EYKKGKEICLAYDNLSKADIFLGRVYKRQYYGLWRYASALMSAGVS 313
Query: 702 AA-------LMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFH-HLASRKSK 753
A R T+ F + GK + K +LE + H++ R+++
Sbjct: 314 LAKDEKYRGFFSYMRPTI------FTKMSRSKGKRGAVNK---VLEKISLKSHVSKRRAR 364
Query: 754 LGRDTLRLDYF 764
D L L+Y
Sbjct: 365 --EDILYLEYI 373
>sp|A0B6D7|RFCL_METTP Replication factor C large subunit OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=rfcL PE=3 SV=1
Length = 467
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 105/379 (27%), Positives = 174/379 (45%), Gaps = 56/379 (14%)
Query: 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSG 404
+W EKYRPK + I+GN + V +L W W + G+ + K IL G
Sbjct: 3 SWAEKYRPKNLDGILGNAKAVSELRAWAMAWEK----------GRPEV-----KCLILYG 47
Query: 405 SPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA 464
PG+GKT+AA + + + IE+NASD R A+I K I G ++
Sbjct: 48 PPGVGKTSAALALASEMDWDYIELNASDQR---TAEIIKSIAGP--------------AS 90
Query: 465 NMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
+ + ++I+DE D + DRGG A ++ IK + P+I I N+ Y+ + K L +
Sbjct: 91 QVSTFSGRRRLVILDEADNLHGTYDRGGAAAILRVIKNATQPVILIANEYYNIE-KPLRD 149
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
C ++FR R Q IA L +I +EG+E A+ +A GD+R AIN L+ + L
Sbjct: 150 ACRGVQFRSIRAQTIASLLREICRSEGIECEPEAVMHIAAMSGGDLRSAINDLEAAARGL 209
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQE 643
++ +D+ +S +D S F +D +F + ++ L S DL+ + +
Sbjct: 210 KHLRLEDV----ATSERDVKASIFRVLDSIFKGEDSRSALEATYQLDESPEDLIHWIDEN 265
Query: 644 NYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAA 703
I Y+ +A+ E +S DIF ++RR Q + L + ++
Sbjct: 266 LPIVYKDRE-----------LAKGFECLSRADIFLGRVRRRQNYTLWRYAAF-------L 307
Query: 704 LMHGQRETLEQGERNFNRF 722
+ G R + R + +F
Sbjct: 308 MTGGVRAVSSKVRRGYTQF 326
>sp|A1RWU6|RFCL_THEPD Replication factor C large subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcL PE=3 SV=1
Length = 413
Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 167/348 (47%), Gaps = 50/348 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP ++VGN++ K+ W+ W + GK ++KAA+L G
Sbjct: 11 WTEKYRPARIADVVGNEEAKKKYVAWINSWVK----------GK-----PSKKAALLYGP 55
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG GKT+ + ++ IE+NASD R + +A + +G N S+
Sbjct: 56 PGSGKTSIVHATAKEFSWELIELNASDVRTR-EALQQRLLGALNTRSV------------ 102
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ ++++DEVDG+S D GG+ ++ I+ S PI+ ND + KL+ L +
Sbjct: 103 ---LGYSGKIILLDEVDGISTKEDAGGLQAIVELIEKSNWPIVLTANDPWDPKLRPLRDL 159
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
C + F+K K++I K L I + EG+E + L +AD GD+R AIN LQ +++
Sbjct: 160 CELIEFKKIGKRDIMKVLENICSKEGVECSREVLSAIADNAKGDLRAAINDLQSLAMGKK 219
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFG--FNGGKLRMDERIDLSMSDPDLVPLLIQ 642
I D+ Q L A+ E I F V + + L + L D +++ +
Sbjct: 220 TISLADL-QILGDRAEQETI--FDIVRSVLTAKYPEQALAVTR---LPSLDYEMLMQWLS 273
Query: 643 ENYI-NYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
EN + Y PS L IA A +++S DI +++R QQW L
Sbjct: 274 ENIVYQYEPS---------LQAIADAYDALSWADIMLTRMKREQQWAL 312
>sp|O29072|RFCL_ARCFU Replication factor C large subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcL PE=1 SV=1
Length = 479
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 124/441 (28%), Positives = 216/441 (48%), Gaps = 70/441 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRPKT E+V ++ ++ ++ W W KR K +L+
Sbjct: 1 MLWVEKYRPKTLEEVVADKSIITRVIKWAKSW---------KRGSK---------PLLLA 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA-- 461
G PG+GKT+ A + +G++A+E+NASD R ++ + I G A E +S+E
Sbjct: 43 GPPGVGKTSLALALANTMGWEAVELNASDQRS---WRVIERIVGEGA--FNETISDEGEF 97
Query: 462 LSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKI-PIICICNDRYSQKLK 519
LS+ + + K ++I+DEVD + D GG A LI IK P+I I ND Y
Sbjct: 98 LSSRIGKLK----LIILDEVDNIHKKEDVGGEAALIRLIKRKPAQPLILIANDPYKLS-P 152
Query: 520 SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579
L N C + F++ KQ++A+ L +IA EG++V++ L ++A+ GD+R AIN Q +
Sbjct: 153 ELRNLCEMINFKRLTKQQVARVLERIALKEGIKVDKSVLLKIAENAGGDLRAAINDFQAL 212
Query: 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPL 639
+ +K +D+ L +++DI F + +F + +E + L S D++
Sbjct: 213 AEGKEELKPEDV--FLTKRTQEKDI--FRVMQMIFKTKNPAV-YNEAMLLDESPEDVIHW 267
Query: 640 LIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCI 699
+ + + Y +G + + A E++S DIF ++RR Q ++L + +S +
Sbjct: 268 VDENLPLEY----SGVE-------LVNAYEALSRADIFLGRVRRRQFYRLWKYASYLMTV 316
Query: 700 IPAALMHGQRETLEQGERNFNRF---GGW-----LGKNSTMGKNLRLLEDL-HFHHLASR 750
G ++ E+ ++ F R+ W L + M + ++LE + + HL+ R
Sbjct: 317 -------GVQQMKEEPKKGFTRYRRPAVWQMLFQLRQKREMTR--KILEKIGKYSHLSMR 367
Query: 751 KSKLGRDTLRLDYFSLLLKQL 771
K++ T LLLK+L
Sbjct: 368 KAR----TEMFPVIKLLLKEL 384
>sp|A4FZL6|RFCL_METM5 Replication factor C large subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcL PE=3 SV=1
Length = 484
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 175/385 (45%), Gaps = 67/385 (17%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRPK+ N++ G+ + + L W+ E F+ NG+KQ K +L+G
Sbjct: 4 WVEKYRPKSLNDVAGHNKTKQALINWI----ESFV------NGQKQ------KPILLAGP 47
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG GKTT A + + F IE+NASD R N + I ++V A S +
Sbjct: 48 PGSGKTTLAHAIAKDYAFDVIELNASDKR--------------NKDVIAQVVGTAATSKS 93
Query: 466 MDRSKHPKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + T++++DEVDG+S D RGG+A++I +K ++ P+I ND Y L +L N
Sbjct: 94 LTGKR---TLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENPVILTANDVYKPALMTLRNN 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL--S 582
+ + I L +IA EG E++E ++ +A GD+R AIN LQ ++ S
Sbjct: 151 VNLINVGSVHTNSIPPVLRKIALKEGFEIDEKVIKTIASHSGGDLRAAINDLQSLATGGS 210
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
L V ++ R D + S F A+ + + D+ D + I
Sbjct: 211 LEVEDAKELPDR------DSEKSIFDAMRIIMKTTHYDIATSATRDVK-EDLGTIQEWIS 263
Query: 643 EN----YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASC 698
EN Y+ Y+ + G D +S D+F ++ + Q + L + +S
Sbjct: 264 ENLPKEYLRYKDLAGGYD-------------YLSKSDVFLGRVFKRQYFGLWRYAS---- 306
Query: 699 IIPAALMHGQRETLEQGERNFNRFG 723
A + G E+ R F R+G
Sbjct: 307 ---ALMTAGTALAKEEKYRGFTRYG 328
>sp|A2BL93|RFCL_HYPBU Replication factor C large subunit OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=rfcL PE=3 SV=1
Length = 484
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 161/351 (45%), Gaps = 51/351 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W KYRPK ++V ++ K WL W Q KAA+
Sbjct: 5 LPWIIKYRPKRVEDVVDQEEAKKLFLPWLRSW--------------LQGRIPERKAALFY 50
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G G+GKT+ + G + IE+NASD R K+D + I + +
Sbjct: 51 GPAGVGKTSLVEAAANEYGLELIEMNASDFRRKSDIERIAKIAATQFSLFG--------- 101
Query: 464 ANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ ++++DEVDG+S DRGG+ ++ I I+K PI+ ND + QKLK L
Sbjct: 102 -------RKRKIILLDEVDGISGTADRGGLDAILELINITKHPIVMTANDPWDQKLKPLR 154
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
+ + F + ++ + + L +I AE +E + AL+ +A R GD+R AIN LQ ++
Sbjct: 155 DASLMVPFYRLSERYVVQVLKRICAAENIECEDEALKLIAQRAEGDLRSAINDLQAIAEG 214
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL-- 640
V++ D +R L + +D SP+ + LF K + ++ +D D LL
Sbjct: 215 YGVVRVDLVRA--LLATRDRQYSPWEMLRNLF---MSKYIWQAKRAVTHTDLDYDTLLQW 269
Query: 641 IQENY-INY-RPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
I EN + Y P I RA E+++ DIF +I+R+ W L
Sbjct: 270 INENIAVQYTHPED-----------IWRAHEALARADIFLGRIKRSLSWDL 309
>sp|A1RSA3|RFCL_PYRIL Replication factor C large subunit OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcL PE=3 SV=1
Length = 423
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 170/349 (48%), Gaps = 31/349 (8%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAIL 402
++ W EKYRPKT EIV ++ L +W+ + + T+ KK + KA +L
Sbjct: 2 AIPWVEKYRPKTFEEIVNQEEAKYTLASWICAKFKAPREFCTRWAKKKDKEIVEAKAVLL 61
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL 462
+G PG+GKTT + + + ++ IE+NASD R IK++V
Sbjct: 62 AGPPGIGKTTIVHALAREIKYELIELNASDVR--------------TGERIKQVVGRGLR 107
Query: 463 SANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
A++ + +++ DEVDG+ D GG+ ++ I+I+K+P+I N+ Y K + L
Sbjct: 108 EASL--FGYEGKLVLFDEVDGLHVKEDLGGLETIVEIIEIAKVPVIMTANNPYDPKFRPL 165
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ-YMS 580
+ + ++ + ++ + L +I EG + E AL +A GD+R AIN LQ Y+S
Sbjct: 166 RDIALVINLKRLSEDDVVEVLRRICANEGAKCEEEALRSIAKSSLGDLRAAINDLQMYLS 225
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
++ DDI++ ++ +S F +D+++ DE +S + P
Sbjct: 226 SGKKILTVDDIKR---VGERNPQLSMFEILDRVYRARW----FDEARAISFN-----PSF 273
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
E Y + + K L L+A A + +S D+F +I++ Q+W+L
Sbjct: 274 DWEQYFLWALETIP-TVYKDLELMAIAYDRLSKADMFLGRIKKTQEWEL 321
>sp|A3CTR4|RFCL_METMJ Replication factor C large subunit OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=rfcL PE=3 SV=1
Length = 454
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 162/333 (48%), Gaps = 52/333 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP+ ++VGN V+ ++ W W+ + +K IL
Sbjct: 1 MDWVEKYRPQHLQDVVGNSGAVRLIYEWARDWSRQ------------------KKPLILY 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKT++A + + ++ +E+NASD R KA + G G + A+
Sbjct: 43 GKPGTGKTSSAYALANDMNWEVVELNASDQRTKAALERVAGAGSTTAS------------ 90
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYS--QKLKS 520
S + ++++DE D + DRGG ++ I ++ PII I ND YS ++LK+
Sbjct: 91 ----LSGASRKLILLDEADNLHGQADRGGAKAIVEIIAAAQQPIILIANDYYSLTRELKA 146
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ ++FR + + I RL QI AEG+ + AL+++A+R GD+R A+N L +
Sbjct: 147 VTE---PVQFRALQARSIVPRLRQICAAEGVACDPAALDDIANRAGGDMRAAVNMLYAAA 203
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMD-ERIDLSMSD-PDLVP 638
+ + D+ +SAKDE + F V F GK D R+ + + D PD +
Sbjct: 204 IGKEHLAAGDVH----TSAKDERSTIFELVGATF---KGKRDADLLRMAVEVEDTPDAIE 256
Query: 639 LLIQENYINYRPSSAGRDEVKRLSLIARAAESI 671
++ N +++ P A R E + +ARA E I
Sbjct: 257 QWLEGN-LDHMPDLASRAE--GYACLARADEYI 286
>sp|A3DNV8|RFCL_STAMF Replication factor C large subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcL PE=3 SV=1
Length = 423
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 167/348 (47%), Gaps = 47/348 (13%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W KYRPK ++V KQ WL W + GK ++KAA+L
Sbjct: 5 IPWIIKYRPKKIADVVNQDSAKKQFIQWLESWLK----------GK-----PSKKAALLY 49
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G G GKT+ + G + +E+NASD R + D + A +
Sbjct: 50 GPAGCGKTSLVEAAANEYGLEIVEMNASDFRRRQD------------------IERIAKT 91
Query: 464 ANMDRSKHPK-TVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
A RS + ++++DEVDG+S DRG I ++ ++I++ P++ N+ + QKLK L
Sbjct: 92 AAFMRSLFARGKIILLDEVDGISGTADRGAIDAILHLLEITRYPVVMTANNPWDQKLKPL 151
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
+ + F++ ++++ L +I E LE + AL E+A R GD+R AIN LQ ++
Sbjct: 152 RDASLMIAFKRLSERDVIIVLKRICQLEKLECEDAALREIARRSEGDLRSAINDLQAIAE 211
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLI 641
+ + +R+ LS+ + + +PF A+ K+F + + +S ++ D ++I
Sbjct: 212 GFGRVTLNWVRE--LSAYRTREYAPFEALQKMF---NARYIFQAKSAISQANIDYETMMI 266
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
N + P+ E I RA E++S D++ +IR++ W L
Sbjct: 267 WIN--EHIPTYYDDPEE-----IWRAYEALSRADVYMGRIRKSGSWDL 307
>sp|A6VIW1|RFCL_METM7 Replication factor C large subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcL PE=3 SV=1
Length = 482
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/383 (27%), Positives = 176/383 (45%), Gaps = 63/383 (16%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRPK+ N++ G+ + + L W+ E F+ NG+KQ K +L+G
Sbjct: 4 WVEKYRPKSLNDVAGHNKTKESLIEWI----ESFI------NGQKQ------KPILLAGP 47
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG GKTT A + + F IE+NASD R N + I ++V A S +
Sbjct: 48 PGSGKTTLAYAIAKDYAFDVIELNASDKR--------------NKDVISQVVGTAATSKS 93
Query: 466 MDRSKHPKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + T++++DEVDG+S D RGG+A++I +K ++ P+I ND Y L +L N
Sbjct: 94 LTGKR---TLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENPVILTANDVYKPALMTLRNS 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
+ + I L +IA EG E++E ++ +A GD+R AIN LQ ++ S
Sbjct: 151 VNLINVGSVHTNSIPPVLRKIALKEGFEIDEKVIKTIASHAGGDLRAAINDLQSLATGGS 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I+ +D ++ +D + S F A+ + + D+ + + I EN
Sbjct: 211 -IEVEDAKEL---PDRDSEKSIFDAMRIIMKTTHYDIATSATRDVK-EELGTIEEWISEN 265
Query: 645 ----YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCII 700
Y+ Y+ + G D +S D+F ++ R Q + L + +S
Sbjct: 266 LPKEYLKYKDLANGYD-------------YLSKSDVFLGRVFRRQYFGLWRYAS------ 306
Query: 701 PAALMHGQRETLEQGERNFNRFG 723
A + G E+ R F R+
Sbjct: 307 -ALMTAGTALAKEEKYRGFTRYA 328
>sp|Q8TPU4|RFCL_METAC Replication factor C large subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcL
PE=3 SV=1
Length = 607
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 170/355 (47%), Gaps = 44/355 (12%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
S++ W EKYRP+T ++VGN++ V+ W W + +T +A I
Sbjct: 8 SAIEWAEKYRPRTLEDVVGNKKAVRDFRAWAEEWQSRIPET---------------RAVI 52
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
L G G+GKT++A + + + + IE+NASD R A + + I GS
Sbjct: 53 LYGPAGIGKTSSAHALARDMDWDVIELNASDQR---TAGVIEKIAGS------------- 96
Query: 462 LSANMDRSKHPKTVLIMDEVDGM-SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
+A+M+ K ++I+DE D + DRGG+ + IK + PI+ I ND Y +
Sbjct: 97 -AASMNTLFGSKRLIILDEADNIHGTADRGGMRAISGIIKGTLQPIVLIANDIYGLT-PT 154
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ N C +++F + + + L ++ AEG+ ++ AL ++A+ GD R AIN LQ +
Sbjct: 155 IRNLCLEIKFGSVQSRSMVPALKKVCGAEGVYCSQEALLQIAENAGGDFRSAINDLQAAA 214
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
++ +DI ++ +D + F A+ K+F K ++ L S DLV +
Sbjct: 215 SGKEKLEVEDIG----TAGRDVKENIFKAMQKIFKSTDCKKALESAYGLDESPEDLVHWI 270
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
+ I Y +++K +S D++ ++++ Q +++ + +S+
Sbjct: 271 DENLPIQYARKDGNLEDIK------TGFGYLSKADLYLGRVKKRQNYRMWRYASM 319
>sp|Q8Q084|RFCL_METMA Replication factor C large subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcL PE=3 SV=1
Length = 610
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 171/355 (48%), Gaps = 44/355 (12%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
S++ W EKYRP+T ++VGN++ V+ L W W Q+ ++A I
Sbjct: 8 SAIEWAEKYRPRTLGDVVGNRKAVQDLRKWAEEW---------------QSGIPEKRAVI 52
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
L G G+GKT++A + + ++ IE+NASD R A + + I GS
Sbjct: 53 LYGPAGIGKTSSAHALAGDMEWEVIELNASDQR---TAGVIEKIAGS------------- 96
Query: 462 LSANMDRSKHPKTVLIMDEVDGM-SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKS 520
+A+M+ K ++I+DE D + DRGG+ + IK + PII I ND Y +
Sbjct: 97 -AASMNTFFGGKRLIILDEADNLHGTADRGGMRAISGIIKSTLQPIILIANDIYGLT-PT 154
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ N C +++F + + + L ++ +EG+ ++ A+ ++A+ GD R AIN LQ +
Sbjct: 155 VRNICLEIKFGSVQSRSMVPALKKVCESEGVSCSQEAVLQIAENAGGDFRSAINDLQAAA 214
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
++ +DI ++ +D + F A+ K+F K ++ L S DLV +
Sbjct: 215 NGKKALEAEDIS----TAGRDVKENIFKAMQKIFKSTDCKRALESAYGLDESPEDLVHWI 270
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
+ I Y +++K +S DI+ ++++ Q +++ + +S+
Sbjct: 271 DENLPIQYARKDGDLEDIK------TGFGYLSKADIYLGRVKKRQNYRMWRYASM 319
>sp|A4WGV3|RFCL_PYRAR Replication factor C large subunit OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcL PE=3 SV=1
Length = 422
Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 171/351 (48%), Gaps = 35/351 (9%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAIL 402
+L W EKYRPK+ ++V ++ L +W+ D T+ KK + +A +L
Sbjct: 2 ALPWVEKYRPKSFADVVDQEEAKYVLASWICARFRAPKDFCTRWAKKKDKEILDARAVLL 61
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL 462
+G PG+GKTT + + +G++ IE+NASD R A +KE+V
Sbjct: 62 AGPPGVGKTTLIHALAREIGYELIELNASDVR--------------TAERLKEVVGRGLR 107
Query: 463 SANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
++ + +++ DEVDG+ D GG+ +I I+ SK+PI+ N+ Y + + L
Sbjct: 108 EGSL--FGYGGKIVLFDEVDGLHVKEDAGGLEAIIEIIENSKVPIVMTANNPYDPRFRPL 165
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ-YMS 580
+ + ++ ++E+ + L +I +EG + E AL +A GD+R AIN LQ Y+S
Sbjct: 166 RDISLVVNLKRLSEEEVVEVLRRICTSEGAKCEEEALRSIAKSSLGDLRAAINDLQMYLS 225
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
+ DDI++ ++ +S F +D+++ DE +S + P
Sbjct: 226 GGRKTLTVDDIKR---VGERNPQLSMFEILDRVYRARW----FDEARAISFN-----PSF 273
Query: 641 IQENYINYRPSS--AGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
E Y + + E++ +S+ A + +S D+F +I+R Q+W+L
Sbjct: 274 DWEQYFIWATETIPVVYKEIETMSV---AYDRLSKADMFIGRIKRTQEWEL 321
>sp|Q5V1F7|RFCL_HALMA Replication factor C large subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcL PE=3 SV=1
Length = 508
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 153/347 (44%), Gaps = 49/347 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP T +E+ GN + L W W++ +A IL
Sbjct: 1 MDWTEKYRPTTLSEVRGNDKARDALKKWAETWDDH------------------REAVILY 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + + + IE+NASDSR K + I + A S
Sbjct: 43 GSPGIGKTSAAHALANDMEWPTIELNASDSRTK--------------DVINRVAGEAAKS 88
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + ++IMDE D + DRGG + A +K + P+I I N+ Y L
Sbjct: 89 GTLTAGGGGRRLVIMDEADNIHGNADRGGARAITALVKEASQPMILIANEYYEMS-NGLR 147
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N C D+ FR + I L + EG+E AL+ELA++ +G +R A+ LQ ++ +
Sbjct: 148 NNCQDIEFRDVSPRSIVPVLRDLCRQEGVEYESDALQELAEQNSGGLRGAVKDLQAIAET 207
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ ++ +D F +D + G + ++ D+ + DL+ +
Sbjct: 208 TERLTADDV----VTGERDTTEGIFEYLDVVLKEAGAQDALEASYDVDETPDDLINWIED 263
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+Y + + RA E +S+ D + ++R Q +
Sbjct: 264 NMPKDYEGTE-----------LVRAYEFLSNADQWLGRVRETQNYSF 299
>sp|A3MS27|RFCL_PYRCJ Replication factor C large subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcL PE=3 SV=1
Length = 421
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/354 (27%), Positives = 173/354 (48%), Gaps = 44/354 (12%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHW-------NEKFLDTGTKRNGKKQNDASA 396
+ W EKYRPK+ +EIV NQ+ KQ+ LA W ++F KR K+ +A
Sbjct: 3 IPWVEKYRPKSFSEIV-NQEEAKQI---LASWICTRFKAPQEFCARWAKRRDKEIKEA-- 56
Query: 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKEL 456
+A +L G PG+GKTT + + +G++ +E+NASD R I+++
Sbjct: 57 -RAVLLWGPPGIGKTTLVHALAKEIGYELVELNASDVR--------------TGERIRQV 101
Query: 457 VSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYS 515
V A++ + +++ DEVDG+ D GG+ ++ I+ +K+PI+ N+ +
Sbjct: 102 VGRGLREASL--FGYAGKIVLFDEVDGLHVKEDLGGLEAILNLIETAKVPIVLTANNPFD 159
Query: 516 QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
KL+ L + + ++ + E+ + L +I +EG + E AL LA GD+R AIN
Sbjct: 160 PKLRPLRDISLVVGLKRLSEDEVVEVLKRICASEGAKCEEEALRSLAKSSYGDLRAAIND 219
Query: 576 LQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPD 635
LQ V+ DDI++ + ++ +S F +D+++ DE +S +
Sbjct: 220 LQLYLAGRKVLTVDDIKR---AGERNPQLSMFEILDRVYKARW----FDEARAVSFN--- 269
Query: 636 LVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
P E Y + + K L +++ A + +S D+F ++R Q+W+L
Sbjct: 270 --PSFDWEQYFVWALETIP-IVYKDLEVMSEAFDRLSKADMFIGIVKRTQEWEL 320
>sp|B1YC69|RFCL_PYRNV Replication factor C large subunit OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=rfcL PE=3 SV=1
Length = 422
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 165/348 (47%), Gaps = 31/348 (8%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRPK +EIV ++ L +W+ + + K++ + + KA +L+
Sbjct: 3 IPWVEKYRPKAFSEIVNQEEAKTLLASWICARFRAPKEFCARWAKKREKEVAEAKAVLLA 62
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT + + + ++ IE+NASD R K+ G G ++
Sbjct: 63 GPPGIGKTTVVHALAREIRYELIELNASDIRTGERIKLVVGRGLKESSLFG--------- 113
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ +++ DEVDG+ D GG+ ++ ++ +K+PI+ N+ Y K + L
Sbjct: 114 -------YEGKLVLFDEVDGLHVKEDEGGLEAIVEIVETAKVPIVMTANNPYDPKFRPLR 166
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ-YMSL 581
+ + ++ ++E+ + L +I AEG + E AL +A GD+R AIN LQ Y+S
Sbjct: 167 DISLVVNLKRLSEEEVVEVLRRICTAEGAKCEEEALRSIAKSSLGDLRAAINDLQMYLSG 226
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLI 641
+ DDI++ ++ +S F +D+++ DE +S + P
Sbjct: 227 GRKTLTVDDIKR---VGERNPQLSMFEVLDRVYRARW----FDEARAVSFN-----PSFD 274
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
E Y + + K + A A + +S D+F +I+R Q+W+L
Sbjct: 275 WEQYFLWALETVP-VVYKDVETAAAAYDRLSKADMFLGRIKRMQEWEL 321
>sp|Q8ZYK3|RFCL_PYRAE Replication factor C large subunit OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcL PE=3 SV=1
Length = 422
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 173/349 (49%), Gaps = 31/349 (8%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAIL 402
+L W EKYRPK+ EIV ++ L +W+ + T+ K+ + + KA +L
Sbjct: 2 ALPWIEKYRPKSFAEIVNQEEAKYTLASWICLKFRAPKEFCTRWAKKRDKEVAEAKAILL 61
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL 462
+G PG+GKTT + + + ++ IE+NASD R A+ +++++
Sbjct: 62 AGPPGVGKTTLVHALAREIRYELIELNASDVR--------------TADRLRQVIGRGLR 107
Query: 463 SANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
+++ +++ DEVDG+ D+GG+ ++I I+ +KIPII N+ Y K + L
Sbjct: 108 ESSL--FGFEGKMVLFDEVDGLHVKEDKGGLEEIIEIIETAKIPIIMTANNPYDPKFRPL 165
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ-YMS 580
+ + ++ ++E+ + L +I +EG + E AL +A GD+R AIN LQ Y+S
Sbjct: 166 RDISLVVNLKRLSEEEVVEVLRRICTSEGAKCEEEALRSIAKSSMGDLRAAINDLQMYLS 225
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLL 640
++ DDI++ ++ +S F +D+++ DE +S + P
Sbjct: 226 GGRRILTLDDIKR---VGERNPQLSMFEILDRVYKARW----FDEARAVSFN-----PSF 273
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
E Y + S K L + + A + +S D+F +I+R Q+W+L
Sbjct: 274 DWEQYFIWALESIP-VVYKDLEIASTAYDRLSKADVFMGRIKRTQEWEL 321
>sp|B9LPV1|RFCL_HALLT Replication factor C large subunit OS=Halorubrum lacusprofundi
(strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)
GN=rfcL PE=3 SV=1
Length = 500
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 163/351 (46%), Gaps = 41/351 (11%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP T +E+ GN + W W++ +A +L GS
Sbjct: 4 WTEKYRPSTLSEVRGNDKARDAFADWARSWDDH------------------HEAVVLHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G++ +E+NASD R AD I + G + N+ + +A
Sbjct: 46 PGVGKTSAAHALANDMGWETVELNASDQR-TADV-IERFAGRAARNATLGGSAAGGGAAG 103
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
D + + ++I+DE D + DRGG + + +K S PI+ I ND Y + L N
Sbjct: 104 GDTAS--RQLVILDEADNIHGNYDRGGASAITELVKESGQPIVLIANDYYDMA-RGLRNA 160
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
++ FR + I L I EG+E ALE +A+R GD+R AIN LQ +
Sbjct: 161 TQEIEFRDVSARSIVPVLRDICRKEGIEFESDALERIAERNRGDLRGAINDLQAATEGRD 220
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I +D+ ++ +D+ + F +D + + + + + PD + I+ N
Sbjct: 221 SIAVEDV----VTGDRDKALGLFPYLDAVLKEESAEEALQSAYAVDET-PDDLTKWIENN 275
Query: 645 YIN-YRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS 694
++ Y PS + RA + +++ D++ ++R Q + + ++
Sbjct: 276 VLDVYDPSE-----------VVRAYDFLANADVWLGRVRATQNYSYWRYAT 315
>sp|Q6M0E9|RFCL_METMP Replication factor C large subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcL PE=3 SV=1
Length = 486
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 173/383 (45%), Gaps = 63/383 (16%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRPK+ N++ G+ + + L W+ E + G+ Q K +L+G
Sbjct: 4 WVEKYRPKSLNDVAGHNKTKQALIEWI----ESII------GGQNQ------KPILLAGP 47
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG GKTT A + F IE+NASD R N + I ++V A S +
Sbjct: 48 PGSGKTTLAYAIANDYAFDVIELNASDKR--------------NKDVISQVVGTAATSKS 93
Query: 466 MDRSKHPKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + T++++DEVDG+S D RGG+A++I +K ++ P+I ND Y L +L N
Sbjct: 94 LTGRR---TLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENPVILTANDVYKPALMTLRNS 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
+ + I L +IA EG E++E ++ +A GD+R AIN LQ ++ S
Sbjct: 151 VNLINVGSVHTNSIPPVLRRIALKEGFEIDEKIIKMIASHSGGDLRAAINDLQSLATGGS 210
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I+ +D ++ +D + S F A+ + + D+ D + I EN
Sbjct: 211 -IEIEDAKEL---PDRDSEKSIFDAMRIIMKTTHYDIATSATRDVK-EDIGTIEEWISEN 265
Query: 645 ----YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCII 700
Y+ Y+ + G D +S D+F ++ R Q + L + +S
Sbjct: 266 LPKEYLKYKDLAEGYD-------------YLSKSDVFLGRVYRRQYFGLWRYAS------ 306
Query: 701 PAALMHGQRETLEQGERNFNRFG 723
A + G E+ R F R+G
Sbjct: 307 -ALMTAGTALAKEEKYRGFTRYG 328
>sp|A9A6N2|RFCL_METM6 Replication factor C large subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcL PE=3 SV=1
Length = 484
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 123/236 (52%), Gaps = 34/236 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRPK+ N++ G+ + + L W+ E F+ +G+KQ K +L+G
Sbjct: 4 WVEKYRPKSLNDVAGHNKTKETLIEWI----ESFV------SGQKQ------KPILLAGP 47
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG GKTT A + + + IE+NASD R N + I ++V A S +
Sbjct: 48 PGSGKTTLAYAIAKDYAYDVIELNASDKR--------------NKDVISQVVGTAATSKS 93
Query: 466 MDRSKHPKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + T++++DEVDG+S D RGG+A++I +K ++ P+I ND Y L +L N
Sbjct: 94 ITGRR---TLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENPVILTANDVYKPALMTLRNN 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
+ + I L +IA EG E++E ++ +A GD+R AIN LQ ++
Sbjct: 151 VNLINVGSVHTNSIPPVLRKIALKEGFEIDEKVIKTIASHAGGDLRAAINDLQSLA 206
>sp|Q5JHP1|RFCL_PYRKO Replication factor C large subunit OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rfcL PE=1
SV=1
Length = 499
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 168/364 (46%), Gaps = 73/364 (20%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
+ + W EKYRP+ +EIV ++ ++Q+ W+ W + +KA +
Sbjct: 2 TEVPWVEKYRPRKLSEIVNQEKALEQVRAWVEAW--------------LHGNPPKKKALL 47
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
L+G PG+GKTT + GF+ IE+NASD R KI + + +
Sbjct: 48 LAGPPGVGKTTTVYALANEYGFEVIELNASDERTYE--KIERYVQAAY------------ 93
Query: 462 LSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
MD + ++ +DE D + IA LI ++ PII N Y + + +
Sbjct: 94 ---TMDILGKRRKLIFLDEADNIEPSGAREIAKLIDK---ARNPIIMSAN-HYWEVPREI 146
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
N + +++ +++I K L++I EGLEV + L E+A R NGD+R A+N LQ +
Sbjct: 147 RNKAQIVEYKRLTQRDIIKALVRILKREGLEVPKEVLYEIAKRANGDLRAAVNDLQTVVT 206
Query: 582 -----SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDL 636
++ V+ Y +D + S F A+ +LF + K R L++ D+
Sbjct: 207 GGVEDAVEVLAY-----------RDTEKSVFQALAQLFATDNAK-----RAKLAVLGVDM 250
Query: 637 VP--LL--IQEN--YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLS 690
+P LL I EN Y+ YRP IARA E++S DI+ + +R + L
Sbjct: 251 MPNELLQWIDENVPYVYYRPED-----------IARAYEALSRADIYLGRAQRTGNYGLW 299
Query: 691 QSSS 694
+ ++
Sbjct: 300 KYAT 303
>sp|A6URV8|RFCL_METVS Replication factor C large subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcL PE=3 SV=1
Length = 492
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 171/382 (44%), Gaps = 63/382 (16%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
W EKYRPK+ N++ G+ + + L +W E F+ G KQ K +L G
Sbjct: 4 WVEKYRPKSLNDVAGHSKTKEAL----CYWIESFI------RGNKQ------KPVLLFGP 47
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG GKTT A + F IE+NASD R N + I ++V A S +
Sbjct: 48 PGSGKTTMAHAIANDYNFDVIELNASDKR--------------NKDVISQVVGTAATSKS 93
Query: 466 MDRSKHPKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ +T++++DEVDG+S D RGG++++I +K ++ P+I ND Y L SL N
Sbjct: 94 L---TGKRTLIVLDEVDGLSGNDDRGGVSEIIKVLKNAENPVILTANDVYKPALSSLRNS 150
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
+ + I L +IA EG E++E ++ ++ GD+R AIN LQ + L+
Sbjct: 151 VTMVDAGSVHTNSIPPVLRKIALKEGFEIDEKVIKLISSHAGGDLRAAINDLQAL-LTGG 209
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I+ +D + +D + S F A+ + + +DL + V I EN
Sbjct: 210 SIEIEDAKNL---PDRDSEKSIFDAIRIIMKTTHYDIATSATVDLK-EELGTVSEWISEN 265
Query: 645 ----YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCII 700
Y+ Y + G D +S D+F ++ R Q + L + +S
Sbjct: 266 LPKEYLKYGDLAKGYD-------------YLSKSDVFLGRVYRRQYFGLWRYAS------ 306
Query: 701 PAALMHGQRETLEQGERNFNRF 722
A + G + E R F R+
Sbjct: 307 -ALMTAGTALSKEDKYRGFTRY 327
>sp|Q18GQ9|RFCL_HALWD Replication factor C large subunit OS=Haloquadratum walsbyi (strain
DSM 16790) GN=rfcL PE=3 SV=1
Length = 516
Score = 119 bits (299), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 170/383 (44%), Gaps = 57/383 (14%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE+YRP T + + GN + W W++ ++ +L G+
Sbjct: 4 WTERYRPTTLSAVRGNNAARDEFIEWAESWDDH------------------HESVVLHGA 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G++ +E+NASD R + + + + G A N L+
Sbjct: 46 PGVGKTSAAHALASDMGWETVELNASDQRT---SDVIERLAGRAAK-------NATLAGA 95
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++IMDE D + DRGG + +K + PI+ I N+ Y + L N
Sbjct: 96 VSGTTSTRQLIIMDEADNIHYQYDRGGKQAVTTLLKDANQPIVLIANEYYDMS-RGLRNA 154
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
D+ FR + I L I E +E E AL+++A+ +GD+R AI LQ
Sbjct: 155 AQDIEFRDISARSIVPVLRNILRKENIEFEEAALKQIAEVNSGDLRAAIKDLQTTVEGSD 214
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQEN 644
I DD++ + +D + F+ +D + + + + D+ + DL+ + +
Sbjct: 215 RITVDDVK----TGGRDRAMGLFSFLDSVLKEDAAEEALQNSYDVDETPDDLLKWVEDKV 270
Query: 645 YINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIR---RNQQWQLSQSSSLASCIIP 701
+ Y + +ARA E +S+ DI+ ++ N +W + +LA +
Sbjct: 271 PLVYDDAE-----------LARAYEFLSNADIWTNRVYATDYNYRWWRYATDNLAGGVAA 319
Query: 702 AALMHGQRETLEQGERNFNRFGG 724
A RET G + R+GG
Sbjct: 320 A------RETQRGG---WTRYGG 333
>sp|P60373|RFCL_NANEQ Replication factor C large subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcL PE=3 SV=1
Length = 430
Score = 119 bits (299), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 163/354 (46%), Gaps = 72/354 (20%)
Query: 349 KYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGM 408
KYRPKT +E+ +Q + L ++ ++ +K+ KA +L G PG
Sbjct: 36 KYRPKTLDEVENQEQAKQILRDYVINYKKKY----------------KGKALLLYGPPGT 79
Query: 409 GKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDR 468
GKT++ + LG++ +EVNASD R +A I +V + +
Sbjct: 80 GKTSSVYALANELGYEVLEVNASDER--------------DAIHIHHIVGEASKGKPLF- 124
Query: 469 SKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSD 527
H ++++DEVDG+S DRGG+ L+ IK S PIIC ND + QKLK L
Sbjct: 125 --HKGRIILVDEVDGLSGKEDRGGVGALVNIIKQSSWPIICTANDPWDQKLKKLREISIM 182
Query: 528 LRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIK 587
+ F++ + + L +I E +++++ L ++A + GD+R AIN L+ ++IK
Sbjct: 183 VEFKRLSPKHVYNVLKKIVTNEKIKISDKILWDIAYKSGGDLRAAINDLE------TIIK 236
Query: 588 YDDIRQRLLSSA--KDEDISPFTAVDKLF----------GFNGGKLRMDERIDLSMSDPD 635
I + + + ++++I F A+ +F FN L DE
Sbjct: 237 SGIIDENFVKALGNREQEIDIFKALGIMFKTENLATAVSAFNNVDLEFDE---------- 286
Query: 636 LVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
+ P L +EN P E KRL I RA + DIF +I + Q W+L
Sbjct: 287 IFPWL-EENI----PV-----EYKRLDDIYRAYYWLGKADIFRKRIIKTQHWRL 330
>sp|Q46AT6|RFCL_METBF Replication factor C large subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcL PE=3 SV=1
Length = 642
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 168/354 (47%), Gaps = 44/354 (12%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAIL 402
++ W EKYRP+T EIVGN++ V+ L TW W D +A +L
Sbjct: 4 AIEWAEKYRPQTLKEIVGNKKAVQYLRTWAEKWLSGIPD---------------RRAVVL 48
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL 462
G G+GKT+ A + + L ++ IE+NASD R A + + + GS
Sbjct: 49 HGPAGVGKTSTAHALARDLDWEVIELNASDQR---TAGVIERVAGS-------------- 91
Query: 463 SANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
+A+M+ K ++I+DE D + DRGG+ + IK + PI+ I ND Y ++
Sbjct: 92 AASMNTFFGGKRLIILDEADNIHGTADRGGMRAIAGIIKNTLQPIVLIANDIYGLT-PTI 150
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
N C +++F + + + L ++ +E + + A++++A+ GD+R AIN LQ +
Sbjct: 151 RNLCLEIKFGSVQSRSMVPALKKVCESEDILCSPDAIQQIAEGAGGDLRSAINDLQAAAT 210
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLI 641
++ +D L +S +D + F A+ ++F K ++ L S DLV +
Sbjct: 211 GRKTLEVED----LSTSGRDVKENIFKAMQRIFKSTDCKKALEAARGLDESPEDLVHWID 266
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
+ Y +++K +S D++ ++++ Q +++ + +S+
Sbjct: 267 ENLPFQYASKDGNLEDIK------TGFGYLSKADLYLGRVKKRQNYRMWRYASM 314
>sp|A7I781|RFCL_METB6 Replication factor C large subunit OS=Methanoregula boonei (strain
6A8) GN=rfcL PE=3 SV=1
Length = 481
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 129/273 (47%), Gaps = 40/273 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP+ +IVGN V+Q+ W W + K +L
Sbjct: 1 MEWAEKYRPEHLADIVGNTSAVRQMADWAKTWTAR------------------SKPLLLY 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKT++ + + + + IE+NASD R A + G G + A+
Sbjct: 43 GKPGIGKTSSVYALARDMNWDVIELNASDQRTAAVIERIAGAGSTTAS------------ 90
Query: 464 ANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + ++IMDE D + DRGG ++ IK ++ PI+ I ND Y + L
Sbjct: 91 ----LTGSARKLIIMDEADNLQGTADRGGAKAILECIKNARQPIVLIANDLYGLAAE-LR 145
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
C ++FR + IA RL I ++E + +E A+ E+A+ GD+R A+N L ++
Sbjct: 146 LRCEPVQFRALPARSIAPRLKYICSSEKIACSESAVHEIAESAEGDMRSAVNMLYASAIG 205
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615
+ ++ +S KDE +S F+ V +FG
Sbjct: 206 RQSLDGKNVH----TSQKDERVSIFSLVTAVFG 234
>sp|Q2FQR4|RFCL_METHJ Replication factor C large subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcL PE=3 SV=1
Length = 483
Score = 117 bits (292), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 144/305 (47%), Gaps = 47/305 (15%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKYRP+ NE+VGN++ + Q+ W W + IL
Sbjct: 1 MDWAEKYRPRHLNEMVGNREALHQMSEWATRWTVE------------------SPPLILY 42
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKT++A + + ++ +E+NASD R K A I K GGS S +L+
Sbjct: 43 GKPGIGKTSSAWALAHDMNWEVVELNASDQRTK--AVIEKVAGGS--------ASTGSLT 92
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ ++I+DE D + DRGG + I+ ++ P+I I ND Y ++
Sbjct: 93 GA------ARKLIILDEADNLQGNADRGGARAIAEVIRQARQPLILIANDLYGLD-GTIR 145
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N C+ ++F+ + + RL +I + E L + AL ++A++ GDIR A+ L ++
Sbjct: 146 NLCTKVQFKALPAKSLVPRLREICSREQLTCSAQALTDIAEQSGGDIRSAVTMLYASAIG 205
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMS---DPDLVPL 639
+ DD+ SAKD S F V G+ ++ +D+SMS PD +
Sbjct: 206 KDTVGEDDVS----ISAKDSRASIFDLVAATLGYR----QVPSLLDMSMSVDETPDTILQ 257
Query: 640 LIQEN 644
I+ N
Sbjct: 258 WIEGN 262
>sp|Q0W3P4|RFCL_UNCMA Replication factor C large subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcL PE=3 SV=1
Length = 553
Score = 116 bits (290), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 104/355 (29%), Positives = 166/355 (46%), Gaps = 59/355 (16%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTEKYRP + +IVGN VK L W E F + +KA IL G
Sbjct: 10 WTEKYRPVSLADIVGNDAAVKALR----QWAETF--------------GTGKKAVILYGG 51
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ IE+NASD R K ++I + A++
Sbjct: 52 PGVGKTSAALALAHDMGWDYIELNASDVRTK--------------DAINRIAGPAAMAGT 97
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ + + ++I+DE D + DRGG A +I I+ + P+I I ND Y+ K L
Sbjct: 98 FEGTGG-RRLVILDEADNLHGNYDRGGEAAIINVIRNASQPVILIANDMYAMS-KPLRES 155
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
++FR +AK L ++ EGL+ + AL ++A+R N D+R AIN LQ +
Sbjct: 156 ALQIQFRAILSTSVAKVLRKVCANEGLKCDPEALMKIAERTN-DLRSAINDLQAAAQGSG 214
Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFG--FNGGKLR--MDERIDLSMSDPDLVPLL 640
+ D+ S D D+ P T + K+ G F G +R ++ L + DL+
Sbjct: 215 QVTVADV------STGDRDV-PET-IFKVMGMIFRGKNMREALNATYGLDENPEDLIG-W 265
Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695
+ EN P D+++ R E++S D++ + RR Q + + + +
Sbjct: 266 VDENL----PREYQDDDLE------RGFEALSRADVYLGRTRRRQDYGMWRYAGF 310
>sp|A8AC24|RFCL_IGNH4 Replication factor C large subunit OS=Ignicoccus hospitalis (strain
KIN4/I / DSM 18386 / JCM 14125) GN=rfcL PE=3 SV=1
Length = 476
Score = 116 bits (290), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 164/351 (46%), Gaps = 46/351 (13%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAI 401
S++ W KYRPK +++ ++ + L W+ W +GT ++AA+
Sbjct: 2 SAVPWIIKYRPKRVEDVIDQEKAKEVLIPWIKKWL-----SGT---------PPEKRAAL 47
Query: 402 LSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA 461
L G PG+GKT+ + +C + IE+NASD R K D + A
Sbjct: 48 LWGPPGVGKTSLVEAICNEFNLEKIEMNASDFRRKGD------------------IERVA 89
Query: 462 LSANMDRSKHPKT--VLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKL 518
++A + P ++++DEVDG+S GD G +A ++ IK +K PI+ ND + L
Sbjct: 90 IAAATKKPLPPWKGRLILLDEVDGLSPRGDEGAVAAILELIKKTKNPIVMTANDPWGTHL 149
Query: 519 KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578
+ + + F++ K + + L++I EG+ + A++ + ++ GD+R +IN LQ
Sbjct: 150 RPIREESLLVEFKRIPKTKAREFLLKICEKEGVYCEKEAVDYIIEKNKGDLRASINDLQS 209
Query: 579 MSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVP 638
++ + + D L+ +D ++P+ + LF ++ + + + + D D +
Sbjct: 210 IAEAYGKVTLDLASALLVE--RDRVLTPWEMLQSLF-YSKYSWQARKAVTSTDLDYDTLF 266
Query: 639 LLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
L I EN P G D + R E++S D+ +IRR W L
Sbjct: 267 LWIAENV----PKQYGDDPYD----LWRGMEAVSRADVIYGRIRRTMNWSL 309
>sp|Q2NH88|RFCL_METST Replication factor C large subunit OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=rfcL PE=3 SV=1
Length = 534
Score = 113 bits (282), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 151/342 (44%), Gaps = 63/342 (18%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ W EKY PK +++GN + Q+ W W++ +K +L
Sbjct: 1 MKWVEKYAPKKLGDVLGNAKAKAQIEVWANKWSK----------------GVPQKPLLLM 44
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A LV + + IEVNASD R + IK + A +
Sbjct: 45 GPPGIGKTTIAHLVGKEYFSETIEVNASDKRS--------------YDIIKSSIGEAAQT 90
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
++ S + +LIMDEVDG+S D GG + +IK SK PII + ND YS++L S+
Sbjct: 91 RSLFHSGYK--LLIMDEVDGISGRDDSGGARAVNETIKNSKQPIILMANDAYSKRLTSIK 148
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM--- 579
C ++F K I +L +I E +E + AL L+ NGD+R AI L+ +
Sbjct: 149 PKCQGIKFTKVHTNSINAQLKRICAREDIEYDSEALYTLSKESNGDLRSAITSLEAIVDN 208
Query: 580 -----SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDP 634
SLSVI D Q + T V L N + R++ + P
Sbjct: 209 DKKITKDSLSVIAKKDGEQNIFD----------TVVAVLKSKNPEHVAEAMRVN---TQP 255
Query: 635 DLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDI 676
+ LI EN P E +R + I +A E IS D+
Sbjct: 256 PFLIELIAENI----PR-----EYERTNEIVKAYEMISLADV 288
>sp|Q12TX1|RFCL_METBU Replication factor C large subunit OS=Methanococcoides burtonii
(strain DSM 6242) GN=rfcL PE=3 SV=1
Length = 497
Score = 112 bits (281), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 181/396 (45%), Gaps = 43/396 (10%)
Query: 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAIL 402
S+ W EKYRP++ +IVGN++ V + W W +GT ++A IL
Sbjct: 4 SIEWVEKYRPQSLTDIVGNKKSVVDMREWAQSWL-----SGTPE----------KRAIIL 48
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL 462
G G+GKT+AA + + L ++ IE+NASD R A + + + GS A+ + L A
Sbjct: 49 HGPAGVGKTSAAHALARDLDWETIELNASDQR---TAGVIERVAGS-ASKMSSLTGTTA- 103
Query: 463 SANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSL 521
K ++I+DE D + DRGG + IK + PI+ I ND Y S+
Sbjct: 104 ----------KRLIILDEADNIHGNADRGGARAIGGIIKNTDQPIVLIANDLYGLT-PSV 152
Query: 522 VNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581
+ C +L+F + + + + +I E + LE+LA+ GD+R AI LQ ++
Sbjct: 153 RSLCIELKFNSVQGRSMIPAMKRICVEEKIMCGVGVLEKLAESAGGDLRSAIKDLQAVAT 212
Query: 582 SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLI 641
I +DI +S +D S F + K+F K ++ L + +L+ I
Sbjct: 213 GRDEIHIEDI----ATSERDTKESIFKVLGKIFKSTDPKKALEATYGLDETPENLIH-WI 267
Query: 642 QENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQ-SSSLASCII 700
EN P G +E + LI E ++ D + ++R+ Q ++L + + +L +C
Sbjct: 268 DENL----PLQYGTEEGTQEDLIT-GYEYLAKADRYLGRVRKRQSYRLWRYAGALMTCGT 322
Query: 701 PAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNL 736
+ H R + +F R G L M N+
Sbjct: 323 VVSKTHVGRGFTKYQPPSFWRKMGQLRAKRDMRDNI 358
>sp|Q9YBS5|RFCL_AERPE Replication factor C large subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcL PE=3 SV=2
Length = 479
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 119/243 (48%), Gaps = 34/243 (13%)
Query: 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKA 399
+ S + W KYRPK ++V Q K L W W E G+K + ++A
Sbjct: 6 RSSRVPWVIKYRPKRVEDVVNQDQAKKILVPWFKAWLE----------GRKPD----KRA 51
Query: 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSN 459
A+L G PG+GKT+ + + + IE+NASD R ++D I + +G
Sbjct: 52 ALLYGPPGVGKTSLVEAIASEFNLEMIELNASDYRRRSD--IERIVG------------- 96
Query: 460 EALSANMDRSKHPK-TVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQK 517
+A+ RS + V+++DEVDG++ D GGI L++ IK ++ PI+ ND +
Sbjct: 97 ---AASRKRSMFKRGVVILLDEVDGINPREDAGGIEALLSVIKTTENPIVMTANDPWKDF 153
Query: 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
L+ L + FR I L +I AE +E AL +A+R GD+R AIN LQ
Sbjct: 154 LRPLREVSLMVEFRPLTLTHIVAVLQRICEAERIECEREALRYIAERSEGDLRSAINDLQ 213
Query: 578 YMS 580
++
Sbjct: 214 AVA 216
>sp|Q3ISA5|RFCL_NATPD Replication factor C large subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcL PE=3 SV=1
Length = 483
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 107/233 (45%), Gaps = 37/233 (15%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
WTE YRP T +E+ GN + W W + +A IL GS
Sbjct: 4 WTEAYRPTTLSEVRGNNKARDAFEEWAKAWEDH------------------REAVILHGS 45
Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
PG+GKT+AA + +G+ +E+NASD+R K + + G SNA L
Sbjct: 46 PGVGKTSAAHALANDMGWPVLEMNASDARTKDEIERFAGRAASNAT----------LGGG 95
Query: 466 MDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
+ ++I+DE D + DRGG A + +K + P++ I ND Y L +
Sbjct: 96 -------RQLIILDEADNLHQHKDRGGAAAMTRLVKDATQPVVLIANDYYEMS-SGLRSA 147
Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577
C D+ FR + I L I E +E +E L+E+A+ GD+R A+ LQ
Sbjct: 148 CRDVEFRDVSARSIVPVLRDICRQENVEFDEDVLQEIAEANRGDLRGAVKDLQ 200
>sp|Q9UWR2|RFCL_PYRFU Replication factor C large subunit OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rfcL PE=1
SV=1
Length = 479
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 154/338 (45%), Gaps = 59/338 (17%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W EKYRPK +EIV ++ ++++ W+ W +KA +L+
Sbjct: 4 LPWVEKYRPKKLSEIVNQEEAIEKVRAWIESW--------------LHGHPPKKKALLLA 49
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG GKTT + F+ IE+NASD R KIS+ + +
Sbjct: 50 GPPGSGKTTTVYALANEYNFEVIELNASDER--TYEKISRYVQAAY-------------- 93
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN 523
MD + ++ +DE D + IA LI +K PII N +Y + K +
Sbjct: 94 -TMDILGKRRKIIFLDEADNIEPSGAKEIAKLIDK---AKNPIIMAAN-KYWEVPKEIRE 148
Query: 524 YCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL 583
+ +++ ++++ L++I EG+ V + L E+A R +GD+R AIN LQ ++
Sbjct: 149 KAELVEYKRLTQRDVMNALIRILKREGITVPKEILLEIAKRSSGDLRAAINDLQ----TV 204
Query: 584 SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQE 643
V Y+D Q L + +D + + F A+ +FG + K +L MS PD L + E
Sbjct: 205 VVGGYEDATQVL--AYRDVEKTVFQALGLVFGSDNAKRAKMAMWNLDMS-PDEFLLWVDE 261
Query: 644 N----YINYRPSSAGRDEVKRLSLIARAAESISDGDIF 677
N Y+N P IA+A ++IS DI+
Sbjct: 262 NIPHLYLN--PEE-----------IAQAYDAISRADIY 286
>sp|Q9USQ1|CTF18_SCHPO Chromosome transmission fidelity protein 18 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ctf18 PE=1 SV=1
Length = 960
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 137/309 (44%), Gaps = 59/309 (19%)
Query: 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKR-------------- 386
QS W + YRP+ +++G++++ + W+ W+ G R
Sbjct: 348 QSQKLWVDTYRPQLFRDLLGDERVHRAAMHWIKAWDPCVF--GKSRLQPSKSMRFNPRFT 405
Query: 387 NGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIG 446
N +D ++ +L+G G GKTT A ++ G++ +E+NASD R
Sbjct: 406 NITSDSDRPDKRIMMLTGLAGAGKTTLAHVIAHQAGYKVLEINASDDR------------ 453
Query: 447 GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKI-- 504
A+++ E VS+ A+S + S P T +I+DE+DG GD + L++ ++ +
Sbjct: 454 --TAHTVHEKVSS-AISNHSALSSQP-TCVIVDEIDG---GDPAFVRALLSLLESDEKAT 506
Query: 505 -------------------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQI 545
PIICICND Y+ L+ L Y + FR P + + RL I
Sbjct: 507 EYSQAGNSKKKKKFKKLCRPIICICNDLYTPALRPLRPYAQIIYFRPPPQASLVGRLRTI 566
Query: 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDIS 605
E + V+ +L L D N DIR IN LQ +SL+ I + I+ L K S
Sbjct: 567 CRNENIAVDSRSLTLLTDIYNSDIRSCINSLQLLSLNNKRIDSETIK---LLQPKSNSFS 623
Query: 606 PFTAVDKLF 614
+ + LF
Sbjct: 624 TSSLIQSLF 632
>sp|Q9HPI4|RFCL_HALSA Replication factor C large subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcL PE=3
SV=2
Length = 471
Score = 107 bits (266), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 148/345 (42%), Gaps = 49/345 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP + +E+ GN L W W + +A ++
Sbjct: 2 VDWTEKYRPASLSEVRGNDTARDALAEWAETWPDH------------------REAVVVH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + G+ +E+NASD R A+ ++ + A S
Sbjct: 44 GSPGIGKTSAAHALANDAGWDVVELNASDQR--------------TADVVERVAGEAARS 89
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + ++++DE D + DRGG A + + + PI+ + N+ Y SL
Sbjct: 90 GTLTGGSGGRKLVLLDEADNLHGNIDRGGSAAITRLVDDAPQPIVLVANEYYEMS-SSLR 148
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
+ C ++ FR K+ I L + E + E AL +A++ GD+R A+N LQ ++
Sbjct: 149 SACREIEFRDVSKRSIVPVLRDVCRREDVTYEEDALAAIAEQNAGDLRSAVNDLQALAEQ 208
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ + +D F +D + + + + D+ + DL+ +
Sbjct: 209 DRTLTADDV----VMGERDRTEGVFDYLDDVIATHSAREALQAAYDVDETPDDLLSWVAD 264
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
+YR +A A E +S+ D++ ++R Q +
Sbjct: 265 NVPKDYRGGE-----------LADAYEFLSNADVWLGRVRATQNY 298
>sp|B0R601|RFCL_HALS3 Replication factor C large subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcL PE=3 SV=1
Length = 471
Score = 107 bits (266), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 148/345 (42%), Gaps = 49/345 (14%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
+ WTEKYRP + +E+ GN L W W + +A ++
Sbjct: 2 VDWTEKYRPASLSEVRGNDTARDALAEWAETWPDH------------------REAVVVH 43
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
GSPG+GKT+AA + G+ +E+NASD R A+ ++ + A S
Sbjct: 44 GSPGIGKTSAAHALANDAGWDVVELNASDQR--------------TADVVERVAGEAARS 89
Query: 464 ANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ + ++++DE D + DRGG A + + + PI+ + N+ Y SL
Sbjct: 90 GTLTGGSGGRKLVLLDEADNLHGNIDRGGSAAITRLVDDAPQPIVLVANEYYEMS-SSLR 148
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
+ C ++ FR K+ I L + E + E AL +A++ GD+R A+N LQ ++
Sbjct: 149 SACREIEFRDVSKRSIVPVLRDVCRREDVTYEEDALAAIAEQNAGDLRSAVNDLQALAEQ 208
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQ 642
+ DD+ + +D F +D + + + + D+ + DL+ +
Sbjct: 209 DRTLTADDV----VMGERDRTEGVFDYLDDVIATHSAREALQAAYDVDETPDDLLSWVAD 264
Query: 643 ENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQW 687
+YR +A A E +S+ D++ ++R Q +
Sbjct: 265 NVPKDYRGGE-----------LADAYEFLSNADVWLGRVRATQNY 298
>sp|P49956|CTF18_YEAST Chromosome transmission fidelity protein 18 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CTF18 PE=1
SV=1
Length = 741
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 135/313 (43%), Gaps = 57/313 (18%)
Query: 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAE---- 397
S W EK+RPK ++VGN++ +++ WL W + ++ + E
Sbjct: 112 SDTLWVEKWRPKKFLDLVGNEKTNRRMLGWLRQWTPAVFKEQLPKLPTEKEVSDMELDPL 171
Query: 398 -----KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANS 452
K +L G PG+GKT+ A ++ + GF E+NASD R G
Sbjct: 172 KRPPKKILLLHGPPGIGKTSVAHVIAKQSGFSVSEINASDERA----------GPMVKEK 221
Query: 453 IKELVSNEALSANMDRSKHPKTVLIMDEVDG-MSAGDRGGIADLIAS-IKISKI------ 504
I L+ N N L+ DE+DG + +G + D++ S IK +
Sbjct: 222 IYNLLFNHTFDTN-------PVCLVADEIDGSIESGFIRILVDIMQSDIKATNKLLYGQP 274
Query: 505 -----------------PIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547
PIICICN+ Y+ L+ L +C + ++P + +RL I +
Sbjct: 275 DKKDKKRKKKRSKLLTRPIICICNNLYAPSLEKLKPFCEIIAVKRPSDTTLLERLNLICH 334
Query: 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL------SVIKYDDIRQRLLSSAKD 601
E + + A+ +L D GD+R IN LQ+++ ++ + K + SS KD
Sbjct: 335 KENMNIPIKAINDLIDLAQGDVRNCINNLQFLASNVDSRDSSASDKPACAKNTWASSNKD 394
Query: 602 EDISPFTAVDKLF 614
IS F V++LF
Sbjct: 395 SPISWFKIVNQLF 407
>sp|Q975D4|RFCL_SULTO Replication factor C large subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcL PE=3
SV=2
Length = 440
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 128/272 (47%), Gaps = 34/272 (12%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W KYRPKT NE+ + K+L W+ W GK KA +L
Sbjct: 3 LQWFLKYRPKTLNEVENEEDAKKELVEWIESW----------LKGKPNY-----KAVLLY 47
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A+ + + + E+NASDSR N N I+ + +++
Sbjct: 48 GPPGVGKTTLAEALARDYKLELFEMNASDSR--------------NLNDIRTMAERASIT 93
Query: 464 ANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
+ K ++++DEVDG++A D G I ++ I +K PII ND + L+ L
Sbjct: 94 GTIFGIKG--KLILLDEVDGLNARADAGAIDAILELINKTKYPIILTANDPWDPSLRPLR 151
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N + ++ K + + L +I AE + + AL+ + ++ GD R AIN LQ ++
Sbjct: 152 NAVKMIELKRLTKYPLKRILKKICEAEKITCEDEALDFIIEQSEGDARYAINMLQGVAEG 211
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ D + L KD ++ PF A+ +F
Sbjct: 212 YGRVTLDMAKN--LVRRKDRELDPFEALRGVF 241
>sp|Q4JAB1|RFCL_SULAC Replication factor C large subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcL PE=3 SV=1
Length = 437
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 130/272 (47%), Gaps = 34/272 (12%)
Query: 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILS 403
L W KYRPK+ E+ ++ ++L W+ W N KA +L
Sbjct: 3 LQWFLKYRPKSLQEVENQDEVKEELKKWIESW---------------LNGEPTAKAVLLY 47
Query: 404 GSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS 463
G PG+GKTT A+ + + + +E+NASDSR N IK++ ++S
Sbjct: 48 GPPGVGKTTLAEALARDYKLELLEMNASDSR--------------NLRDIKDVAERASIS 93
Query: 464 ANMDRSKHPKTVLIMDEVDGM-SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLV 522
++ K ++++DE+DG+ S D G I ++ I+ +K P+I ND + L+SL
Sbjct: 94 GSLFGIKG--KIILLDEIDGIYSRADAGAIPAILELIEKTKYPVILTANDPWDPSLRSLR 151
Query: 523 NYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582
N + ++ K + + L +I E + + AL+ + ++ GD R IN LQ ++
Sbjct: 152 NAVKMIELKRLGKYPLKRLLKRICEKEKIVCIDEALDHIIEQSEGDARYCINMLQGIAEG 211
Query: 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614
+ D++++ L KD ++ PF + +F
Sbjct: 212 YGKVTLDNVKE--LVRRKDRELDPFETLRDVF 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 299,775,746
Number of Sequences: 539616
Number of extensions: 13752301
Number of successful extensions: 58481
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 875
Number of HSP's that attempted gapping in prelim test: 53217
Number of HSP's gapped (non-prelim): 4692
length of query: 790
length of database: 191,569,459
effective HSP length: 126
effective length of query: 664
effective length of database: 123,577,843
effective search space: 82055687752
effective search space used: 82055687752
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)