Query 003873
Match_columns 790
No_of_seqs 605 out of 4089
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 13:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1968 Replication factor C, 100.0 2.5E-55 5.5E-60 520.2 29.8 572 187-789 156-738 (871)
2 PRK04195 replication factor C 100.0 2.5E-49 5.4E-54 454.7 34.0 374 344-771 2-378 (482)
3 KOG1969 DNA replication checkp 100.0 1.4E-43 2.9E-48 398.8 28.9 408 342-779 257-712 (877)
4 PF03215 Rad17: Rad17 cell cyc 100.0 3.1E-43 6.7E-48 402.2 27.2 410 341-787 4-510 (519)
5 TIGR00602 rad24 checkpoint pro 100.0 1.2E-36 2.7E-41 353.4 24.7 412 339-785 67-567 (637)
6 KOG1970 Checkpoint RAD17-RFC c 100.0 2.8E-32 6E-37 300.6 19.4 343 341-709 67-480 (634)
7 KOG0989 Replication factor C, 100.0 6.6E-32 1.4E-36 280.6 20.7 224 342-596 22-251 (346)
8 KOG0991 Replication factor C, 100.0 9.4E-32 2E-36 268.7 14.6 217 342-595 13-234 (333)
9 PRK07003 DNA polymerase III su 100.0 2.3E-30 5.1E-35 299.3 24.3 231 343-615 3-258 (830)
10 PLN03025 replication factor C 100.0 1.6E-29 3.4E-34 276.5 24.5 232 344-615 1-237 (319)
11 PRK14956 DNA polymerase III su 100.0 2.6E-29 5.7E-34 282.1 23.1 215 342-595 4-243 (484)
12 PRK14960 DNA polymerase III su 100.0 9.2E-29 2E-33 283.9 27.0 290 344-676 3-324 (702)
13 PRK14958 DNA polymerase III su 100.0 1.4E-28 3E-33 282.7 27.2 288 343-676 3-322 (509)
14 PRK12323 DNA polymerase III su 100.0 1.8E-28 4E-33 280.8 25.1 230 343-614 3-262 (700)
15 PRK08691 DNA polymerase III su 100.0 4.7E-28 1E-32 280.5 24.7 305 343-678 3-326 (709)
16 PRK07994 DNA polymerase III su 100.0 1.7E-27 3.7E-32 277.3 25.0 230 343-598 3-244 (647)
17 PRK14951 DNA polymerase III su 100.0 5E-27 1.1E-31 273.0 26.5 244 343-615 3-263 (618)
18 PRK14949 DNA polymerase III su 100.0 4.1E-27 8.9E-32 277.2 24.4 227 343-595 3-241 (944)
19 PRK14964 DNA polymerase III su 100.0 2.5E-27 5.4E-32 268.9 21.2 230 344-615 1-255 (491)
20 PRK14952 DNA polymerase III su 100.0 7.8E-27 1.7E-31 270.5 25.0 242 344-614 1-257 (584)
21 PRK07764 DNA polymerase III su 99.9 2.2E-26 4.8E-31 275.8 26.2 241 344-614 3-259 (824)
22 PRK14957 DNA polymerase III su 99.9 1.9E-26 4E-31 265.1 24.3 230 343-614 3-257 (546)
23 PRK14961 DNA polymerase III su 99.9 2.9E-26 6.3E-31 254.9 24.0 244 343-615 3-258 (363)
24 PRK06645 DNA polymerase III su 99.9 1.7E-26 3.7E-31 264.0 22.2 246 341-615 6-270 (507)
25 PRK14969 DNA polymerase III su 99.9 4.6E-26 9.9E-31 263.4 25.9 244 343-615 3-258 (527)
26 PRK14962 DNA polymerase III su 99.9 7.8E-26 1.7E-30 257.6 24.2 230 344-615 2-256 (472)
27 PRK14959 DNA polymerase III su 99.9 7.1E-26 1.5E-30 261.7 24.1 230 343-614 3-257 (624)
28 PRK08451 DNA polymerase III su 99.9 4.3E-26 9.3E-31 260.9 21.9 214 344-596 2-240 (535)
29 PRK05896 DNA polymerase III su 99.9 4.4E-26 9.6E-31 262.1 21.9 228 343-596 3-242 (605)
30 PRK14965 DNA polymerase III su 99.9 1.6E-25 3.5E-30 261.7 26.7 245 343-615 3-258 (576)
31 PRK00440 rfc replication facto 99.9 2E-25 4.2E-30 243.1 25.2 233 342-615 3-240 (319)
32 COG2812 DnaX DNA polymerase II 99.9 1.4E-26 3.1E-31 261.8 14.9 234 343-602 3-248 (515)
33 PRK12402 replication factor C 99.9 5.7E-25 1.2E-29 241.4 26.3 246 343-615 2-264 (337)
34 COG2256 MGS1 ATPase related to 99.9 5.9E-25 1.3E-29 236.5 24.8 210 344-597 12-237 (436)
35 PRK09111 DNA polymerase III su 99.9 1.7E-25 3.7E-30 260.6 22.4 244 342-614 10-270 (598)
36 PRK14963 DNA polymerase III su 99.9 2.1E-25 4.6E-30 255.9 21.7 226 346-615 4-254 (504)
37 PRK05563 DNA polymerase III su 99.9 3.3E-25 7.2E-30 258.0 21.9 216 343-597 3-243 (559)
38 PRK14955 DNA polymerase III su 99.9 4.5E-25 9.7E-30 248.1 21.9 244 343-614 3-270 (397)
39 PRK14954 DNA polymerase III su 99.9 7E-25 1.5E-29 255.8 22.9 242 344-614 4-270 (620)
40 PRK14953 DNA polymerase III su 99.9 6.2E-25 1.4E-29 251.3 21.7 244 343-615 3-258 (486)
41 PHA02544 44 clamp loader, smal 99.9 2.4E-24 5.3E-29 234.9 25.1 282 339-679 4-293 (316)
42 PRK07133 DNA polymerase III su 99.9 5.9E-25 1.3E-29 257.3 21.5 244 342-614 4-256 (725)
43 PRK14948 DNA polymerase III su 99.9 3.2E-24 6.9E-29 251.5 25.0 228 343-595 3-242 (620)
44 PRK14971 DNA polymerase III su 99.9 3.4E-24 7.3E-29 251.3 23.7 244 343-615 4-260 (614)
45 PRK06305 DNA polymerase III su 99.9 2.1E-24 4.5E-29 245.5 21.1 243 342-613 3-258 (451)
46 PRK14950 DNA polymerase III su 99.9 1.1E-23 2.4E-28 247.2 27.4 244 343-615 3-259 (585)
47 PRK14970 DNA polymerase III su 99.9 1.4E-23 3E-28 234.0 21.1 230 342-615 3-247 (367)
48 PRK06647 DNA polymerase III su 99.9 1.2E-23 2.7E-28 244.1 21.3 243 343-614 3-257 (563)
49 TIGR02397 dnaX_nterm DNA polym 99.9 2.4E-23 5.1E-28 230.5 21.5 230 344-615 2-256 (355)
50 KOG2035 Replication factor C, 99.9 7.8E-23 1.7E-27 209.8 22.9 209 344-586 1-239 (351)
51 PF08519 RFC1: Replication fac 99.9 1.3E-25 2.7E-30 218.9 2.3 110 671-789 1-110 (155)
52 PRK13342 recombination factor 99.9 1.1E-22 2.3E-27 230.1 23.5 211 345-597 1-218 (413)
53 PF05496 RuvB_N: Holliday junc 99.9 2.8E-23 6E-28 211.2 15.5 200 341-579 9-225 (233)
54 PRK13341 recombination factor 99.9 2.6E-21 5.6E-26 229.9 24.0 213 342-595 14-244 (725)
55 KOG2028 ATPase related to the 99.9 1.7E-21 3.7E-26 205.8 19.4 217 343-597 125-367 (554)
56 COG5275 BRCT domain type II [G 99.9 1.1E-21 2.5E-26 192.4 14.6 85 196-280 148-232 (276)
57 COG2255 RuvB Holliday junction 99.9 1.9E-20 4.1E-25 193.6 23.1 266 345-651 15-313 (332)
58 PRK04132 replication factor C 99.9 1E-20 2.2E-25 225.7 22.3 197 398-615 565-768 (846)
59 KOG0990 Replication factor C, 99.9 1.7E-21 3.8E-26 204.1 13.8 210 341-584 26-241 (360)
60 PRK00080 ruvB Holliday junctio 99.9 6.4E-20 1.4E-24 201.6 26.5 265 343-647 12-308 (328)
61 TIGR02902 spore_lonB ATP-depen 99.8 5E-20 1.1E-24 213.9 19.7 233 343-597 52-331 (531)
62 COG0470 HolB ATPase involved i 99.8 1.9E-19 4.1E-24 196.3 14.5 182 356-582 1-206 (325)
63 TIGR00635 ruvB Holliday juncti 99.8 1.7E-18 3.8E-23 188.0 20.0 204 353-595 1-226 (305)
64 PRK09112 DNA polymerase III su 99.8 1.7E-17 3.7E-22 183.1 19.3 202 349-578 16-243 (351)
65 PRK08084 DNA replication initi 99.8 3.5E-17 7.6E-22 171.6 20.1 196 354-595 20-233 (235)
66 PRK07940 DNA polymerase III su 99.8 2.1E-17 4.5E-22 184.8 18.8 202 354-576 3-214 (394)
67 PRK08727 hypothetical protein; 99.7 7.4E-17 1.6E-21 168.9 21.1 173 397-595 41-228 (233)
68 PRK06893 DNA replication initi 99.7 7E-17 1.5E-21 168.7 20.4 201 351-595 11-227 (229)
69 TIGR03420 DnaA_homol_Hda DnaA 99.7 1.3E-16 2.8E-21 165.5 20.1 198 352-595 11-225 (226)
70 PTZ00112 origin recognition co 99.7 9.4E-17 2E-21 187.2 20.7 225 348-596 750-1004(1164)
71 PRK08903 DnaA regulatory inact 99.7 3.3E-16 7.1E-21 163.1 21.7 196 351-595 13-223 (227)
72 PRK06063 DNA polymerase III su 99.7 1.8E-17 3.9E-22 180.3 12.4 102 180-283 209-311 (313)
73 TIGR02881 spore_V_K stage V sp 99.7 1.7E-16 3.6E-21 169.0 18.1 203 355-581 5-236 (261)
74 COG0272 Lig NAD-dependent DNA 99.7 9.4E-18 2E-22 192.0 8.7 75 203-278 593-667 (667)
75 PRK07471 DNA polymerase III su 99.7 1.8E-16 3.9E-21 175.8 18.5 197 350-577 13-240 (365)
76 PRK05564 DNA polymerase III su 99.7 3.7E-16 8E-21 170.7 19.7 182 354-576 2-191 (313)
77 COG1223 Predicted ATPase (AAA+ 99.7 1.5E-16 3.2E-21 162.4 14.9 222 348-597 113-354 (368)
78 PRK06620 hypothetical protein; 99.7 4E-16 8.7E-21 161.2 17.7 188 354-594 14-212 (214)
79 COG1222 RPT1 ATP-dependent 26S 99.7 3.1E-16 6.7E-21 167.1 16.7 225 344-593 139-387 (406)
80 TIGR02928 orc1/cdc6 family rep 99.7 1.3E-15 2.9E-20 169.4 21.9 227 345-597 7-273 (365)
81 PRK06195 DNA polymerase III su 99.7 1.4E-16 3.1E-21 173.3 11.6 78 202-279 218-308 (309)
82 PRK07399 DNA polymerase III su 99.7 1.2E-15 2.6E-20 166.2 18.5 197 354-579 2-225 (314)
83 PRK05642 DNA replication initi 99.7 2.2E-15 4.7E-20 157.9 19.7 173 397-595 45-232 (234)
84 KOG0733 Nuclear AAA ATPase (VC 99.7 1E-15 2.3E-20 171.3 17.7 198 354-576 188-403 (802)
85 PRK14350 ligA NAD-dependent DN 99.7 8.7E-17 1.9E-21 189.0 9.3 76 202-278 591-666 (669)
86 PRK09087 hypothetical protein; 99.7 2.1E-15 4.6E-20 157.1 18.2 166 398-596 45-220 (226)
87 PRK00149 dnaA chromosomal repl 99.7 3.1E-15 6.7E-20 171.3 20.8 184 397-597 148-348 (450)
88 PRK00411 cdc6 cell division co 99.6 1.4E-14 3E-19 163.0 23.1 232 345-598 22-282 (394)
89 PRK14351 ligA NAD-dependent DN 99.6 2.8E-16 6.1E-21 185.5 9.4 79 202-280 607-685 (689)
90 CHL00195 ycf46 Ycf46; Provisio 99.6 9.1E-15 2E-19 167.4 21.1 218 352-595 224-460 (489)
91 TIGR00362 DnaA chromosomal rep 99.6 1.3E-14 2.8E-19 164.1 21.6 185 397-598 136-337 (405)
92 PRK14088 dnaA chromosomal repl 99.6 1.2E-14 2.6E-19 165.5 20.4 185 397-597 130-331 (440)
93 TIGR00678 holB DNA polymerase 99.6 6.5E-15 1.4E-19 148.9 15.3 165 396-572 13-188 (188)
94 PRK12422 chromosomal replicati 99.6 2.2E-14 4.7E-19 163.2 20.8 185 396-597 140-342 (445)
95 TIGR02639 ClpA ATP-dependent C 99.6 1.2E-14 2.6E-19 175.5 19.1 221 343-597 169-428 (731)
96 TIGR02903 spore_lon_C ATP-depe 99.6 2E-14 4.3E-19 169.8 19.6 232 344-597 142-429 (615)
97 TIGR01241 FtsH_fam ATP-depende 99.6 2.8E-14 6.2E-19 165.3 20.1 228 345-597 44-294 (495)
98 PTZ00361 26 proteosome regulat 99.6 8E-15 1.7E-19 165.6 15.0 227 343-595 170-421 (438)
99 CHL00181 cbbX CbbX; Provisiona 99.6 6E-14 1.3E-18 151.2 20.8 203 356-582 23-253 (287)
100 PRK07956 ligA NAD-dependent DN 99.6 2.3E-15 5E-20 177.9 9.2 76 203-279 589-664 (665)
101 PRK14086 dnaA chromosomal repl 99.6 6.5E-14 1.4E-18 162.2 20.3 184 397-597 314-514 (617)
102 PF00308 Bac_DnaA: Bacterial d 99.6 3.5E-14 7.5E-19 147.3 15.9 192 354-580 6-213 (219)
103 CHL00176 ftsH cell division pr 99.6 7E-14 1.5E-18 164.8 20.2 219 353-596 180-421 (638)
104 TIGR02880 cbbX_cfxQ probable R 99.6 7.5E-14 1.6E-18 150.4 18.6 200 357-582 23-252 (284)
105 PRK14087 dnaA chromosomal repl 99.6 1.6E-13 3.6E-18 156.5 21.7 186 397-597 141-347 (450)
106 PRK08058 DNA polymerase III su 99.6 8E-14 1.7E-18 153.3 17.1 191 354-577 3-206 (329)
107 KOG0734 AAA+-type ATPase conta 99.5 8E-14 1.7E-18 154.1 16.8 217 349-591 297-534 (752)
108 KOG0730 AAA+-type ATPase [Post 99.5 1.2E-13 2.5E-18 157.3 18.4 208 348-580 426-649 (693)
109 PTZ00454 26S protease regulato 99.5 1.7E-13 3.6E-18 153.8 19.6 222 349-596 138-384 (398)
110 PRK03992 proteasome-activating 99.5 7E-14 1.5E-18 157.1 16.4 219 352-596 127-370 (389)
111 TIGR03345 VI_ClpV1 type VI sec 99.5 8.7E-14 1.9E-18 169.5 18.2 206 343-581 174-408 (852)
112 PRK05707 DNA polymerase III su 99.5 9.7E-14 2.1E-18 152.1 16.7 173 395-577 20-205 (328)
113 TIGR00575 dnlj DNA ligase, NAD 99.5 1.1E-14 2.3E-19 172.1 8.0 71 202-273 582-652 (652)
114 COG1474 CDC6 Cdc6-related prot 99.5 6.2E-13 1.4E-17 147.6 20.8 223 347-595 11-262 (366)
115 PLN00020 ribulose bisphosphate 99.5 1.8E-13 3.9E-18 148.4 15.7 159 395-568 146-331 (413)
116 PRK07993 DNA polymerase III su 99.5 3E-13 6.5E-18 148.6 17.7 171 395-577 22-206 (334)
117 PRK06871 DNA polymerase III su 99.5 5.3E-13 1.2E-17 145.5 18.5 172 395-577 22-205 (325)
118 TIGR00763 lon ATP-dependent pr 99.5 3.1E-13 6.7E-18 164.2 18.2 203 353-580 316-551 (775)
119 KOG0731 AAA+-type ATPase conta 99.5 4.9E-13 1.1E-17 156.3 18.4 221 351-595 306-550 (774)
120 TIGR01242 26Sp45 26S proteasom 99.5 3.8E-13 8.2E-18 150.1 16.2 221 349-595 115-360 (364)
121 KOG0738 AAA+-type ATPase [Post 99.5 3.9E-13 8.4E-18 144.4 15.4 214 354-594 210-448 (491)
122 PRK08769 DNA polymerase III su 99.5 8.6E-13 1.9E-17 143.7 17.6 171 395-577 24-210 (319)
123 TIGR01243 CDC48 AAA family ATP 99.4 1.3E-12 2.9E-17 158.2 18.0 199 352-575 449-667 (733)
124 KOG0733 Nuclear AAA ATPase (VC 99.4 1.1E-12 2.5E-17 147.3 14.6 204 354-580 509-733 (802)
125 TIGR03689 pup_AAA proteasome A 99.4 1.6E-12 3.4E-17 149.1 15.4 192 345-554 171-385 (512)
126 PF13177 DNA_pol3_delta2: DNA 99.4 1.6E-12 3.5E-17 128.6 13.1 138 360-534 1-162 (162)
127 COG0593 DnaA ATPase involved i 99.4 8.4E-12 1.8E-16 138.6 20.1 183 396-597 112-312 (408)
128 CHL00095 clpC Clp protease ATP 99.4 2E-12 4.4E-17 158.0 16.1 204 344-581 167-399 (821)
129 TIGR03346 chaperone_ClpB ATP-d 99.4 3.5E-12 7.6E-17 156.4 17.6 206 343-581 160-394 (852)
130 PRK06090 DNA polymerase III su 99.4 8.9E-12 1.9E-16 135.6 17.6 168 395-577 23-203 (319)
131 KOG0727 26S proteasome regulat 99.4 6E-12 1.3E-16 128.4 15.0 207 344-575 142-371 (408)
132 PRK10733 hflB ATP-dependent me 99.4 1.4E-11 3E-16 146.8 19.0 226 345-595 141-389 (644)
133 PRK10787 DNA-binding ATP-depen 99.4 1.4E-11 3E-16 148.9 19.0 184 357-565 323-535 (784)
134 PF00004 AAA: ATPase family as 99.4 3.4E-12 7.3E-17 120.2 10.3 112 400-527 1-126 (132)
135 KOG0728 26S proteasome regulat 99.3 1.5E-11 3.3E-16 125.3 15.3 222 342-591 133-381 (404)
136 KOG0737 AAA+-type ATPase [Post 99.3 5.2E-12 1.1E-16 135.9 12.4 192 354-571 90-298 (386)
137 TIGR03015 pepcterm_ATPase puta 99.3 4.8E-11 1E-15 127.1 19.3 194 397-597 43-265 (269)
138 PRK10865 protein disaggregatio 99.3 1.2E-11 2.6E-16 151.4 16.2 207 343-582 165-400 (857)
139 PRK11034 clpA ATP-dependent Cl 99.3 1.9E-11 4.1E-16 146.8 17.5 215 346-595 176-430 (758)
140 PF06068 TIP49: TIP49 C-termin 99.3 5.4E-12 1.2E-16 136.8 11.4 105 473-580 279-396 (398)
141 PRK06964 DNA polymerase III su 99.3 1.6E-11 3.4E-16 135.0 14.8 168 395-576 19-226 (342)
142 COG0464 SpoVK ATPases of the A 99.3 2.6E-11 5.5E-16 140.8 17.4 221 353-596 239-481 (494)
143 KOG0736 Peroxisome assembly fa 99.3 1.5E-11 3.2E-16 141.6 14.7 185 354-566 670-876 (953)
144 TIGR02640 gas_vesic_GvpN gas v 99.3 9.1E-11 2E-15 125.2 19.7 193 397-595 21-254 (262)
145 KOG0739 AAA+-type ATPase [Post 99.3 1E-11 2.2E-16 129.4 11.8 193 351-567 127-333 (439)
146 TIGR01243 CDC48 AAA family ATP 99.3 3.1E-11 6.6E-16 146.4 17.1 196 351-571 173-383 (733)
147 PRK11034 clpA ATP-dependent Cl 99.3 3E-11 6.5E-16 145.1 16.7 197 357-577 459-709 (758)
148 COG1224 TIP49 DNA helicase TIP 99.3 6.9E-11 1.5E-15 126.2 17.4 119 473-594 292-428 (450)
149 CHL00206 ycf2 Ycf2; Provisiona 99.3 3.7E-11 8E-16 149.9 17.3 196 393-596 1626-1875(2281)
150 KOG0729 26S proteasome regulat 99.3 1.2E-11 2.6E-16 127.1 10.8 217 340-582 161-400 (435)
151 PRK05342 clpX ATP-dependent pr 99.3 7E-11 1.5E-15 133.1 17.3 115 358-486 73-187 (412)
152 COG0465 HflB ATP-dependent Zn 99.3 5.2E-11 1.1E-15 137.4 15.8 198 353-575 147-365 (596)
153 TIGR03345 VI_ClpV1 type VI sec 99.3 6.6E-11 1.4E-15 144.6 17.4 201 356-580 566-827 (852)
154 KOG0743 AAA+-type ATPase [Post 99.3 1.3E-10 2.8E-15 128.4 17.5 164 350-546 195-383 (457)
155 KOG0735 AAA+-type ATPase [Post 99.3 1.2E-10 2.7E-15 132.9 17.7 205 354-582 665-887 (952)
156 KOG0652 26S proteasome regulat 99.2 6.4E-11 1.4E-15 121.4 13.2 189 351-566 165-374 (424)
157 COG0466 Lon ATP-dependent Lon 99.2 1E-10 2.3E-15 134.6 16.0 200 357-581 324-555 (782)
158 KOG2004 Mitochondrial ATP-depe 99.2 1.4E-10 2.9E-15 132.9 16.4 200 357-581 412-643 (906)
159 PRK08699 DNA polymerase III su 99.2 5.3E-10 1.1E-14 122.7 20.5 137 395-544 19-183 (325)
160 PRK05917 DNA polymerase III su 99.2 1.9E-10 4.1E-15 123.2 16.0 155 395-570 17-176 (290)
161 TIGR02639 ClpA ATP-dependent C 99.2 1.8E-10 4E-15 139.4 17.8 201 356-578 454-706 (731)
162 KOG0651 26S proteasome regulat 99.2 6.7E-11 1.4E-15 124.4 11.5 145 354-522 130-289 (388)
163 PRK05201 hslU ATP-dependent pr 99.2 2.8E-10 6E-15 126.5 16.9 69 357-432 16-85 (443)
164 cd00009 AAA The AAA+ (ATPases 99.2 1.7E-10 3.6E-15 109.1 11.9 139 360-531 2-150 (151)
165 KOG2227 Pre-initiation complex 99.2 3.7E-10 8E-15 124.7 15.5 211 344-579 141-375 (529)
166 TIGR00390 hslU ATP-dependent p 99.2 7.2E-10 1.6E-14 123.2 17.9 69 357-432 13-82 (441)
167 KOG0740 AAA+-type ATPase [Post 99.2 2.7E-10 5.9E-15 126.7 14.3 202 348-573 145-364 (428)
168 TIGR00382 clpX endopeptidase C 99.2 5.3E-10 1.2E-14 125.5 16.2 116 358-486 79-195 (413)
169 PF05673 DUF815: Protein of un 99.2 2.3E-09 5E-14 111.3 19.5 192 347-579 18-245 (249)
170 KOG1514 Origin recognition com 99.2 7E-10 1.5E-14 127.4 17.0 208 356-582 396-627 (767)
171 PRK05818 DNA polymerase III su 99.1 9.1E-10 2E-14 115.7 16.3 168 396-579 6-194 (261)
172 PLN03122 Poly [ADP-ribose] pol 99.1 1.1E-10 2.3E-15 139.4 10.3 80 201-281 186-268 (815)
173 CHL00095 clpC Clp protease ATP 99.1 7.6E-10 1.7E-14 135.6 18.0 186 356-565 509-760 (821)
174 PRK07132 DNA polymerase III su 99.1 1.6E-09 3.4E-14 117.3 18.2 169 395-577 16-186 (299)
175 KOG0726 26S proteasome regulat 99.1 1.1E-10 2.4E-15 121.5 8.8 226 342-593 171-421 (440)
176 KOG0730 AAA+-type ATPase [Post 99.1 7.2E-10 1.6E-14 126.8 16.0 195 351-571 180-388 (693)
177 PRK07276 DNA polymerase III su 99.1 1.1E-09 2.5E-14 117.6 15.9 180 361-576 7-198 (290)
178 TIGR03346 chaperone_ClpB ATP-d 99.1 2.1E-09 4.5E-14 132.2 20.0 201 356-580 565-822 (852)
179 TIGR01650 PD_CobS cobaltochela 99.1 7.7E-10 1.7E-14 120.1 14.3 182 350-565 39-252 (327)
180 KOG0744 AAA+-type ATPase [Post 99.1 6E-10 1.3E-14 117.8 12.5 174 356-546 142-340 (423)
181 PRK10865 protein disaggregatio 99.1 2E-09 4.3E-14 132.1 18.5 207 354-580 566-825 (857)
182 PRK13407 bchI magnesium chelat 99.1 2.1E-09 4.6E-14 118.0 16.2 222 351-595 3-303 (334)
183 PF01637 Arch_ATPase: Archaeal 99.1 1.7E-09 3.7E-14 111.5 14.6 188 358-573 1-232 (234)
184 KOG0742 AAA+-type ATPase [Post 99.1 1.3E-09 2.7E-14 118.1 13.3 171 351-549 349-531 (630)
185 TIGR01817 nifA Nif-specific re 99.1 1.1E-09 2.5E-14 128.3 13.6 217 350-591 190-438 (534)
186 KOG1942 DNA helicase, TBP-inte 99.0 7.6E-09 1.6E-13 108.0 15.9 102 473-577 297-412 (456)
187 COG0542 clpA ATP-binding subun 99.0 2.9E-09 6.2E-14 126.1 13.3 200 356-579 491-750 (786)
188 PHA02244 ATPase-like protein 99.0 6.9E-09 1.5E-13 113.9 15.3 126 397-536 119-264 (383)
189 PF05621 TniB: Bacterial TniB 99.0 3E-08 6.5E-13 106.1 19.1 193 396-592 60-283 (302)
190 TIGR02974 phageshock_pspF psp 99.0 7.8E-09 1.7E-13 113.8 14.7 200 358-582 1-232 (329)
191 PRK08116 hypothetical protein; 98.9 4.8E-09 1E-13 112.2 11.0 157 349-534 78-250 (268)
192 PRK12377 putative replication 98.9 4.9E-09 1.1E-13 110.7 10.7 131 350-514 68-207 (248)
193 KOG2680 DNA helicase TIP49, TB 98.9 2.2E-08 4.7E-13 105.0 14.9 105 473-580 289-406 (454)
194 KOG0735 AAA+-type ATPase [Post 98.9 3.2E-08 7E-13 113.6 17.3 184 396-595 430-645 (952)
195 CHL00081 chlI Mg-protoporyphyr 98.9 4.3E-08 9.3E-13 108.1 17.7 226 348-596 8-320 (350)
196 PRK15424 propionate catabolism 98.9 1.9E-08 4E-13 117.0 14.7 204 353-582 216-464 (538)
197 TIGR02329 propionate_PrpR prop 98.9 2.8E-08 6.1E-13 115.5 15.4 214 353-592 209-464 (526)
198 PRK13531 regulatory ATPase Rav 98.9 4.4E-08 9.6E-13 111.1 16.3 206 356-592 20-278 (498)
199 PRK11608 pspF phage shock prot 98.8 2.2E-08 4.8E-13 110.2 13.3 204 354-582 4-239 (326)
200 COG1219 ClpX ATP-dependent pro 98.8 1.9E-08 4.1E-13 106.5 11.5 113 358-486 63-176 (408)
201 PRK11388 DNA-binding transcrip 98.8 4E-08 8.6E-13 117.8 15.7 209 352-592 321-565 (638)
202 KOG0732 AAA+-type ATPase conta 98.8 3.7E-08 7.9E-13 119.0 15.1 197 353-576 262-481 (1080)
203 PRK05022 anaerobic nitric oxid 98.8 3.4E-08 7.3E-13 115.2 14.5 204 354-582 185-419 (509)
204 COG2204 AtoC Response regulato 98.8 4.2E-08 9.2E-13 110.9 14.6 212 354-590 139-383 (464)
205 PRK10820 DNA-binding transcrip 98.8 4.1E-08 9E-13 114.6 14.8 208 351-590 199-446 (520)
206 TIGR02030 BchI-ChlI magnesium 98.8 1E-07 2.3E-12 104.9 16.9 222 355-596 3-307 (337)
207 COG0714 MoxR-like ATPases [Gen 98.8 3.4E-08 7.3E-13 108.9 13.2 157 357-543 25-200 (329)
208 COG0542 clpA ATP-binding subun 98.8 7.7E-08 1.7E-12 114.2 16.6 202 346-581 160-391 (786)
209 COG1221 PspF Transcriptional r 98.8 4.6E-08 1E-12 108.8 13.9 205 354-583 76-309 (403)
210 TIGR02442 Cob-chelat-sub cobal 98.8 1.2E-07 2.7E-12 113.1 18.4 212 355-596 3-302 (633)
211 PRK07952 DNA replication prote 98.8 2.3E-08 5.1E-13 105.3 10.6 135 347-514 63-206 (244)
212 PRK15429 formate hydrogenlyase 98.8 8.5E-08 1.8E-12 115.8 15.6 198 353-582 373-608 (686)
213 PRK05601 DNA polymerase III su 98.8 3.2E-08 6.9E-13 108.2 10.5 105 177-283 268-373 (377)
214 PF07728 AAA_5: AAA domain (dy 98.7 3.1E-09 6.7E-14 101.9 2.1 87 399-497 1-90 (139)
215 COG2607 Predicted ATPase (AAA+ 98.7 7.4E-07 1.6E-11 91.5 18.7 195 347-581 51-279 (287)
216 PRK11331 5-methylcytosine-spec 98.7 7.1E-08 1.5E-12 108.7 12.5 157 355-542 174-368 (459)
217 PRK08181 transposase; Validate 98.7 3.4E-08 7.3E-13 105.6 9.4 99 397-513 106-209 (269)
218 smart00382 AAA ATPases associa 98.7 9.2E-08 2E-12 89.2 11.3 108 397-512 2-125 (148)
219 PF00533 BRCT: BRCA1 C Terminu 98.7 5.6E-08 1.2E-12 83.2 7.7 76 201-277 2-78 (78)
220 COG1220 HslU ATP-dependent pro 98.6 8.8E-07 1.9E-11 94.7 16.9 67 358-431 17-84 (444)
221 PF13173 AAA_14: AAA domain 98.6 1.4E-07 3.1E-12 89.5 9.8 121 397-538 2-127 (128)
222 PF13401 AAA_22: AAA domain; P 98.6 3.1E-08 6.6E-13 93.5 4.7 110 397-515 4-128 (131)
223 PRK06835 DNA replication prote 98.6 2.4E-07 5.2E-12 101.8 12.2 102 398-514 184-290 (329)
224 PF07724 AAA_2: AAA domain (Cd 98.6 4.7E-08 1E-12 97.7 5.9 102 397-512 3-129 (171)
225 TIGR02915 PEP_resp_reg putativ 98.6 3.7E-07 8E-12 104.6 13.9 204 354-582 137-371 (445)
226 PF00931 NB-ARC: NB-ARC domain 98.6 1.1E-06 2.5E-11 94.2 16.2 182 361-576 1-202 (287)
227 PF12738 PTCB-BRCT: twin BRCT 98.6 5.2E-08 1.1E-12 80.8 4.5 62 208-271 1-62 (63)
228 KOG0736 Peroxisome assembly fa 98.6 8.8E-07 1.9E-11 103.1 14.8 155 396-567 430-596 (953)
229 PRK06526 transposase; Provisio 98.5 9.3E-08 2E-12 101.5 6.4 100 397-514 98-202 (254)
230 PRK10923 glnG nitrogen regulat 98.5 2.1E-06 4.7E-11 99.1 17.8 211 355-591 137-381 (469)
231 TIGR00764 lon_rel lon-related 98.5 2.1E-06 4.5E-11 101.9 17.8 124 473-596 218-389 (608)
232 COG3829 RocR Transcriptional r 98.5 9E-07 1.9E-11 100.4 14.0 209 349-581 238-477 (560)
233 PRK06921 hypothetical protein; 98.5 4.1E-07 9E-12 97.3 10.6 99 397-514 117-226 (266)
234 smart00763 AAA_PrkA PrkA AAA d 98.5 1.3E-06 2.8E-11 96.2 14.6 60 350-423 44-104 (361)
235 PRK08939 primosomal protein Dn 98.5 3.7E-07 7.9E-12 99.6 10.3 132 349-513 120-261 (306)
236 cd00027 BRCT Breast Cancer Sup 98.5 5.2E-07 1.1E-11 74.6 9.0 71 207-277 1-71 (72)
237 PF01078 Mg_chelatase: Magnesi 98.5 3.2E-07 6.9E-12 93.6 9.0 46 354-421 1-46 (206)
238 PRK13765 ATP-dependent proteas 98.5 3.1E-06 6.7E-11 100.3 18.4 51 352-424 27-77 (637)
239 PRK15115 response regulator Gl 98.5 1.4E-06 2.9E-11 100.0 14.7 189 397-592 157-378 (444)
240 PRK06581 DNA polymerase III su 98.5 4.3E-06 9.3E-11 86.7 16.2 163 395-573 13-185 (263)
241 PRK14700 recombination factor 98.5 1.5E-06 3.2E-11 92.9 13.3 95 501-595 6-112 (300)
242 COG3604 FhlA Transcriptional r 98.5 1.7E-06 3.8E-11 97.0 14.3 203 354-581 221-454 (550)
243 PF05729 NACHT: NACHT domain 98.5 1.1E-06 2.4E-11 85.6 11.3 142 398-546 1-163 (166)
244 PF01695 IstB_IS21: IstB-like 98.5 1.8E-07 4E-12 94.1 5.8 100 397-514 47-151 (178)
245 TIGR02031 BchD-ChlD magnesium 98.5 2.4E-06 5.2E-11 101.2 15.8 190 397-596 16-256 (589)
246 KOG0741 AAA+-type ATPase [Post 98.4 3.7E-07 8.1E-12 102.1 7.6 178 395-582 254-457 (744)
247 smart00292 BRCT breast cancer 98.4 1.2E-06 2.6E-11 74.1 9.2 76 204-279 2-79 (80)
248 TIGR01818 ntrC nitrogen regula 98.4 2.7E-06 5.9E-11 98.0 15.0 212 356-592 134-378 (463)
249 PF00158 Sigma54_activat: Sigm 98.4 3.3E-07 7.3E-12 91.3 6.4 128 358-517 1-148 (168)
250 smart00350 MCM minichromosome 98.4 5.2E-06 1.1E-10 96.9 17.2 168 357-546 204-400 (509)
251 PRK11361 acetoacetate metaboli 98.4 2.6E-06 5.6E-11 97.9 14.5 212 355-591 142-386 (457)
252 COG3267 ExeA Type II secretory 98.4 5.8E-06 1.3E-10 86.0 15.3 182 397-579 51-248 (269)
253 COG1484 DnaC DNA replication p 98.4 8.2E-07 1.8E-11 94.4 8.3 102 397-515 105-211 (254)
254 PRK08485 DNA polymerase III su 98.3 2.8E-06 6.1E-11 85.8 10.9 118 450-577 39-169 (206)
255 PRK07452 DNA polymerase III su 98.3 3E-05 6.6E-10 85.3 19.9 193 398-615 2-212 (326)
256 PRK09183 transposase/IS protei 98.3 1.7E-06 3.6E-11 92.4 8.8 100 397-513 102-206 (259)
257 PRK05574 holA DNA polymerase I 98.3 5.2E-05 1.1E-09 83.7 20.6 143 471-616 75-228 (340)
258 PF03266 NTPase_1: NTPase; In 98.3 5.3E-07 1.2E-11 89.9 4.1 67 472-539 95-164 (168)
259 TIGR01128 holA DNA polymerase 98.3 4E-05 8.7E-10 83.0 18.8 140 471-615 45-192 (302)
260 KOG0745 Putative ATP-dependent 98.3 2.9E-06 6.3E-11 93.3 9.7 79 397-485 226-304 (564)
261 TIGR00368 Mg chelatase-related 98.3 6.6E-06 1.4E-10 95.3 12.6 47 353-421 189-235 (499)
262 PF07726 AAA_3: ATPase family 98.3 1.3E-06 2.8E-11 82.4 5.5 84 399-499 1-89 (131)
263 PF14532 Sigma54_activ_2: Sigm 98.2 1.5E-06 3.2E-11 83.7 5.8 110 359-516 1-113 (138)
264 PRK10365 transcriptional regul 98.2 1.8E-05 3.8E-10 90.6 14.9 189 396-591 161-382 (441)
265 PF12775 AAA_7: P-loop contain 98.2 5.7E-06 1.2E-10 88.8 10.1 163 354-548 8-195 (272)
266 COG1618 Predicted nucleotide k 98.2 1.6E-05 3.4E-10 77.4 11.7 138 397-540 5-169 (179)
267 PRK05629 hypothetical protein; 98.1 9.9E-05 2.1E-09 81.1 18.6 192 395-615 4-206 (318)
268 PF13191 AAA_16: AAA ATPase do 98.1 1.8E-06 3.9E-11 86.1 4.1 60 357-433 1-63 (185)
269 PF12774 AAA_6: Hydrolytic ATP 98.1 0.00011 2.4E-09 77.1 17.1 130 397-552 32-183 (231)
270 PRK06585 holA DNA polymerase I 98.0 0.00016 3.5E-09 80.2 17.8 193 396-615 19-224 (343)
271 PHA00729 NTP-binding motif con 98.0 1.3E-05 2.7E-10 83.3 7.9 120 397-544 17-138 (226)
272 PF13604 AAA_30: AAA domain; P 98.0 1.9E-05 4.2E-10 80.7 9.0 111 397-514 18-132 (196)
273 cd01120 RecA-like_NTPases RecA 98.0 5.2E-05 1.1E-09 73.3 11.0 110 400-513 2-137 (165)
274 PRK09862 putative ATP-dependen 97.9 0.00011 2.5E-09 85.0 14.7 47 353-421 188-234 (506)
275 PRK05907 hypothetical protein; 97.9 0.00067 1.5E-08 74.3 19.7 190 398-615 19-217 (311)
276 PHA02774 E1; Provisional 97.9 4.4E-05 9.5E-10 88.3 10.8 125 397-552 434-587 (613)
277 KOG0741 AAA+-type ATPase [Post 97.9 0.00025 5.5E-09 80.0 16.2 168 394-582 535-722 (744)
278 PRK04841 transcriptional regul 97.9 0.00021 4.6E-09 89.1 17.7 194 349-573 6-223 (903)
279 PRK07914 hypothetical protein; 97.9 0.00041 8.9E-09 76.4 17.8 141 471-615 63-208 (320)
280 PF10443 RNA12: RNA12 protein; 97.9 0.0004 8.6E-09 77.9 17.4 198 362-582 2-285 (431)
281 PRK04296 thymidine kinase; Pro 97.9 6.9E-05 1.5E-09 76.2 10.4 105 398-512 3-115 (190)
282 PRK04132 replication factor C 97.9 8E-06 1.7E-10 99.1 4.1 51 343-413 6-56 (846)
283 PF14516 AAA_35: AAA-like doma 97.9 0.0016 3.5E-08 72.1 21.9 184 397-591 31-253 (331)
284 KOG1051 Chaperone HSP104 and r 97.9 6.1E-05 1.3E-09 91.1 11.0 119 357-499 563-687 (898)
285 PRK13695 putative NTPase; Prov 97.8 0.00019 4.1E-09 71.7 12.2 72 472-544 96-170 (174)
286 COG1239 ChlI Mg-chelatase subu 97.8 0.00027 5.8E-09 78.7 13.5 198 355-577 16-261 (423)
287 KOG0477 DNA replication licens 97.8 9.2E-05 2E-09 84.7 9.8 132 398-542 483-645 (854)
288 PF00910 RNA_helicase: RNA hel 97.8 9.3E-05 2E-09 68.1 8.1 23 400-422 1-23 (107)
289 COG0606 Predicted ATPase with 97.7 2.8E-05 6E-10 87.5 5.1 48 352-421 175-222 (490)
290 PTZ00111 DNA replication licen 97.7 0.00012 2.5E-09 88.9 10.8 173 345-546 443-657 (915)
291 COG1373 Predicted ATPase (AAA+ 97.7 0.0012 2.5E-08 75.0 18.2 120 399-540 39-161 (398)
292 PRK13406 bchD magnesium chelat 97.7 0.00051 1.1E-08 81.2 15.0 190 397-596 25-248 (584)
293 KOG2170 ATPase of the AAA+ sup 97.7 0.00077 1.7E-08 71.9 14.4 226 358-616 84-331 (344)
294 COG5271 MDN1 AAA ATPase contai 97.7 0.00029 6.3E-09 87.3 12.5 172 396-582 1542-1755(4600)
295 PRK08487 DNA polymerase III su 97.7 0.0026 5.5E-08 70.4 19.4 140 471-616 70-215 (328)
296 PLN03210 Resistant to P. syrin 97.7 0.00088 1.9E-08 85.9 17.7 197 352-576 180-395 (1153)
297 KOG2543 Origin recognition com 97.7 0.00063 1.4E-08 74.6 13.7 172 355-544 5-191 (438)
298 PRK12723 flagellar biosynthesi 97.6 0.0007 1.5E-08 76.2 13.8 94 396-500 173-281 (388)
299 cd01124 KaiC KaiC is a circadi 97.6 0.00028 6.1E-09 70.7 9.5 106 399-512 1-139 (187)
300 PF13207 AAA_17: AAA domain; P 97.6 6.8E-05 1.5E-09 69.8 4.4 32 399-430 1-32 (121)
301 COG3283 TyrR Transcriptional r 97.6 0.0014 3.1E-08 71.1 14.4 196 354-581 202-430 (511)
302 KOG2228 Origin recognition com 97.5 0.00098 2.1E-08 72.0 13.0 172 356-546 24-219 (408)
303 PF03969 AFG1_ATPase: AFG1-lik 97.5 0.00018 4E-09 80.2 7.1 122 395-533 60-201 (362)
304 PTZ00202 tuzin; Provisional 97.5 0.0018 4E-08 72.8 14.7 64 351-431 257-320 (550)
305 COG1241 MCM2 Predicted ATPase 97.4 0.00057 1.2E-08 81.2 10.2 151 357-530 287-465 (682)
306 TIGR00174 miaA tRNA isopenteny 97.4 0.00076 1.6E-08 72.9 9.7 156 400-587 2-172 (287)
307 PF07693 KAP_NTPase: KAP famil 97.4 0.011 2.5E-07 64.6 19.3 37 396-432 19-61 (325)
308 PHA02624 large T antigen; Prov 97.4 0.0011 2.3E-08 77.4 11.4 41 395-435 429-469 (647)
309 PRK00091 miaA tRNA delta(2)-is 97.4 0.00047 1E-08 75.3 8.0 160 397-587 4-177 (307)
310 TIGR01618 phage_P_loop phage n 97.3 0.00043 9.2E-09 72.0 7.2 22 397-418 12-33 (220)
311 KOG0482 DNA replication licens 97.3 0.0017 3.7E-08 73.1 12.0 230 346-595 332-635 (721)
312 PLN02840 tRNA dimethylallyltra 97.3 0.0014 3.1E-08 74.0 11.4 164 396-588 20-199 (421)
313 cd01121 Sms Sms (bacterial rad 97.3 0.0011 2.5E-08 74.3 10.6 107 396-511 81-208 (372)
314 PRK14722 flhF flagellar biosyn 97.3 0.0015 3.2E-08 73.1 11.1 39 396-434 136-179 (374)
315 COG1466 HolA DNA polymerase II 97.3 0.025 5.5E-07 62.7 20.4 195 396-615 15-221 (334)
316 COG5271 MDN1 AAA ATPase contai 97.3 0.0016 3.4E-08 81.2 11.4 163 397-574 888-1071(4600)
317 COG0324 MiaA tRNA delta(2)-iso 97.3 0.0023 5E-08 69.4 11.7 161 397-588 3-177 (308)
318 PRK14729 miaA tRNA delta(2)-is 97.2 0.0012 2.6E-08 71.7 9.4 158 397-587 4-176 (300)
319 PRK14532 adenylate kinase; Pro 97.2 0.005 1.1E-07 62.1 13.3 30 399-428 2-31 (188)
320 PRK14737 gmk guanylate kinase; 97.2 0.0077 1.7E-07 61.1 14.5 26 396-421 3-28 (186)
321 PLN03123 poly [ADP-ribose] pol 97.2 0.001 2.2E-08 82.2 9.5 77 203-280 392-470 (981)
322 PRK11823 DNA repair protein Ra 97.2 0.00097 2.1E-08 76.7 8.8 107 396-511 79-206 (446)
323 PF09848 DUF2075: Uncharacteri 97.2 0.00098 2.1E-08 74.4 8.6 24 398-421 2-25 (352)
324 COG3284 AcoR Transcriptional a 97.2 0.00072 1.6E-08 78.5 7.6 180 397-582 336-539 (606)
325 cd01129 PulE-GspE PulE/GspE Th 97.2 0.004 8.6E-08 66.8 12.8 122 352-509 56-180 (264)
326 PRK05703 flhF flagellar biosyn 97.2 0.0029 6.2E-08 72.4 12.1 38 397-434 221-263 (424)
327 cd03283 ABC_MutS-like MutS-lik 97.2 0.002 4.4E-08 66.1 9.9 23 397-419 25-47 (199)
328 PF00437 T2SE: Type II/IV secr 97.2 0.0029 6.2E-08 67.8 11.5 104 352-484 100-209 (270)
329 PRK10536 hypothetical protein; 97.2 0.0068 1.5E-07 64.3 13.8 23 398-420 75-97 (262)
330 TIGR02782 TrbB_P P-type conjug 97.1 0.0015 3.3E-08 71.2 9.1 25 397-421 132-156 (299)
331 PRK00131 aroK shikimate kinase 97.1 0.00048 1E-08 68.0 4.7 33 396-428 3-35 (175)
332 PRK13900 type IV secretion sys 97.1 0.0096 2.1E-07 65.9 15.3 26 397-422 160-185 (332)
333 PRK14738 gmk guanylate kinase; 97.1 0.0034 7.3E-08 64.7 11.1 26 395-420 11-36 (206)
334 PRK08118 topology modulation p 97.1 0.00042 9.2E-09 69.0 4.2 32 399-430 3-34 (167)
335 PF00448 SRP54: SRP54-type pro 97.1 0.0025 5.3E-08 65.3 9.8 41 397-437 1-44 (196)
336 PF06144 DNA_pol3_delta: DNA p 97.1 0.0013 2.9E-08 65.0 7.6 111 471-581 56-172 (172)
337 PRK00771 signal recognition pa 97.1 0.011 2.5E-07 67.6 15.9 40 396-435 94-136 (437)
338 PRK05800 cobU adenosylcobinami 97.1 0.0014 3.1E-08 65.5 7.5 107 399-514 3-127 (170)
339 COG2804 PulE Type II secretory 97.1 0.0019 4.1E-08 73.7 9.2 54 349-423 231-284 (500)
340 cd01131 PilT Pilus retraction 97.1 0.0025 5.4E-08 65.2 9.3 25 398-422 2-26 (198)
341 PRK14712 conjugal transfer nic 97.0 0.0034 7.3E-08 80.9 12.2 177 361-578 837-1024(1623)
342 PRK15455 PrkA family serine pr 97.0 0.00075 1.6E-08 78.3 5.6 56 353-422 73-128 (644)
343 PF06309 Torsin: Torsin; Inte 97.0 0.0013 2.9E-08 62.0 6.2 53 356-421 25-77 (127)
344 TIGR01448 recD_rel helicase, p 97.0 0.0026 5.6E-08 77.4 10.2 108 397-512 338-452 (720)
345 PRK14974 cell division protein 97.0 0.0059 1.3E-07 67.6 12.1 40 396-435 139-181 (336)
346 PRK14528 adenylate kinase; Pro 97.0 0.0069 1.5E-07 61.4 11.7 31 398-428 2-32 (186)
347 PF10923 DUF2791: P-loop Domai 97.0 0.042 9.1E-07 62.3 19.0 96 471-566 238-372 (416)
348 KOG3347 Predicted nucleotide k 97.0 0.00064 1.4E-08 65.5 3.8 34 396-429 6-39 (176)
349 TIGR02688 conserved hypothetic 97.0 0.0044 9.6E-08 69.8 10.9 24 397-420 209-232 (449)
350 cd00046 DEXDc DEAD-like helica 97.0 0.0026 5.7E-08 58.9 7.9 24 398-421 1-24 (144)
351 PRK11889 flhF flagellar biosyn 97.0 0.0046 1E-07 69.2 10.7 96 397-500 241-347 (436)
352 PRK03839 putative kinase; Prov 96.9 0.0008 1.7E-08 67.5 4.3 31 399-429 2-32 (180)
353 cd00267 ABC_ATPase ABC (ATP-bi 96.9 0.0056 1.2E-07 59.9 10.2 109 396-512 24-139 (157)
354 PRK09361 radB DNA repair and r 96.9 0.0048 1E-07 64.2 10.2 36 396-431 22-60 (225)
355 PRK08533 flagellar accessory p 96.9 0.0055 1.2E-07 64.3 10.7 37 396-432 23-62 (230)
356 cd01128 rho_factor Transcripti 96.9 0.0022 4.8E-08 68.0 7.7 28 396-423 15-42 (249)
357 PRK13947 shikimate kinase; Pro 96.9 0.00087 1.9E-08 66.4 4.4 32 399-430 3-34 (171)
358 cd03115 SRP The signal recogni 96.9 0.0077 1.7E-07 59.9 11.0 36 399-434 2-40 (173)
359 PF13671 AAA_33: AAA domain; P 96.9 0.00083 1.8E-08 64.2 3.8 30 399-428 1-30 (143)
360 TIGR02768 TraA_Ti Ti-type conj 96.9 0.0085 1.8E-07 73.3 13.2 104 398-511 369-475 (744)
361 COG1936 Predicted nucleotide k 96.9 0.00077 1.7E-08 66.7 3.4 30 399-429 2-31 (180)
362 COG1102 Cmk Cytidylate kinase 96.9 0.00089 1.9E-08 65.5 3.8 29 399-427 2-30 (179)
363 PRK00625 shikimate kinase; Pro 96.9 0.001 2.2E-08 66.8 4.3 31 399-429 2-32 (173)
364 PRK13709 conjugal transfer nic 96.9 0.0058 1.3E-07 79.8 12.1 108 397-512 984-1099(1747)
365 KOG0478 DNA replication licens 96.8 0.0057 1.2E-07 71.4 10.6 127 398-536 463-616 (804)
366 COG4088 Predicted nucleotide k 96.8 0.0035 7.6E-08 63.7 7.8 25 398-422 2-26 (261)
367 PF12780 AAA_8: P-loop contain 96.8 0.011 2.3E-07 63.5 12.2 134 396-546 30-210 (268)
368 COG4650 RtcR Sigma54-dependent 96.8 0.0033 7.1E-08 66.6 7.9 95 396-497 207-307 (531)
369 TIGR02237 recomb_radB DNA repa 96.8 0.0067 1.5E-07 62.2 10.2 38 395-432 10-50 (209)
370 cd00544 CobU Adenosylcobinamid 96.8 0.0072 1.6E-07 60.4 10.0 104 400-513 2-126 (169)
371 PF04665 Pox_A32: Poxvirus A32 96.8 0.03 6.6E-07 59.0 15.0 143 397-543 13-167 (241)
372 cd03281 ABC_MSH5_euk MutS5 hom 96.8 0.0032 6.9E-08 65.3 7.6 23 397-419 29-51 (213)
373 cd00464 SK Shikimate kinase (S 96.8 0.0012 2.5E-08 64.0 4.1 31 399-429 1-31 (154)
374 COG2909 MalT ATP-dependent tra 96.8 0.026 5.6E-07 67.8 15.7 185 351-569 14-227 (894)
375 TIGR02322 phosphon_PhnN phosph 96.8 0.0088 1.9E-07 59.8 10.3 26 398-423 2-27 (179)
376 cd03280 ABC_MutS2 MutS2 homolo 96.8 0.0035 7.6E-08 64.1 7.5 21 398-418 29-49 (200)
377 PRK13949 shikimate kinase; Pro 96.8 0.0013 2.8E-08 65.7 4.1 32 398-429 2-33 (169)
378 TIGR00416 sms DNA repair prote 96.8 0.0082 1.8E-07 69.2 11.2 107 396-511 93-220 (454)
379 PRK13808 adenylate kinase; Pro 96.7 0.015 3.3E-07 64.0 12.6 30 399-428 2-31 (333)
380 cd00984 DnaB_C DnaB helicase C 96.7 0.013 2.7E-07 61.5 11.5 37 396-432 12-52 (242)
381 PLN02674 adenylate kinase 96.7 0.025 5.4E-07 59.8 13.6 32 397-428 31-62 (244)
382 TIGR02788 VirB11 P-type DNA tr 96.7 0.041 8.8E-07 60.4 15.9 26 397-422 144-169 (308)
383 TIGR02012 tigrfam_recA protein 96.7 0.01 2.2E-07 65.2 11.1 110 395-511 53-190 (321)
384 cd03282 ABC_MSH4_euk MutS4 hom 96.7 0.0068 1.5E-07 62.5 9.2 22 397-418 29-50 (204)
385 PLN02748 tRNA dimethylallyltra 96.7 0.003 6.6E-08 72.5 7.2 34 396-429 21-54 (468)
386 PRK06067 flagellar accessory p 96.7 0.011 2.4E-07 61.9 10.9 38 395-432 23-63 (234)
387 PRK10875 recD exonuclease V su 96.7 0.0063 1.4E-07 72.5 10.0 110 397-512 167-301 (615)
388 cd03216 ABC_Carb_Monos_I This 96.7 0.011 2.4E-07 58.5 10.2 109 396-512 25-141 (163)
389 PF05970 PIF1: PIF1-like helic 96.7 0.0036 7.8E-08 70.2 7.6 28 396-423 21-48 (364)
390 PRK13889 conjugal transfer rel 96.7 0.012 2.6E-07 73.3 12.7 105 398-512 363-470 (988)
391 PRK06762 hypothetical protein; 96.7 0.002 4.3E-08 63.6 4.9 34 397-430 2-35 (166)
392 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0016 3.4E-08 65.3 4.1 29 400-428 2-30 (183)
393 cd00983 recA RecA is a bacter 96.7 0.011 2.4E-07 65.0 10.9 38 395-432 53-93 (325)
394 PRK12726 flagellar biosynthesi 96.7 0.012 2.6E-07 65.7 11.2 94 396-497 205-309 (407)
395 cd03243 ABC_MutS_homologs The 96.7 0.011 2.4E-07 60.6 10.4 22 397-418 29-50 (202)
396 PRK07261 topology modulation p 96.7 0.0017 3.6E-08 65.0 4.2 31 399-429 2-32 (171)
397 COG0194 Gmk Guanylate kinase [ 96.7 0.013 2.9E-07 58.9 10.4 27 397-423 4-30 (191)
398 cd03238 ABC_UvrA The excision 96.7 0.013 2.8E-07 59.0 10.5 25 396-420 20-44 (176)
399 PRK14531 adenylate kinase; Pro 96.6 0.002 4.3E-08 65.0 4.6 31 398-428 3-33 (183)
400 PRK06217 hypothetical protein; 96.6 0.0018 3.9E-08 65.3 4.2 31 399-429 3-33 (183)
401 COG1116 TauB ABC-type nitrate/ 96.6 0.0033 7.2E-08 65.8 6.2 26 396-421 28-53 (248)
402 PRK06696 uridine kinase; Valid 96.6 0.0047 1E-07 64.3 7.4 55 361-432 3-60 (223)
403 cd02021 GntK Gluconate kinase 96.6 0.0018 4E-08 62.7 4.1 28 400-427 2-29 (150)
404 cd03214 ABC_Iron-Siderophores_ 96.6 0.014 3.1E-07 58.5 10.7 26 396-421 24-49 (180)
405 smart00072 GuKc Guanylate kina 96.6 0.016 3.5E-07 58.4 11.1 25 397-421 2-26 (184)
406 PRK14530 adenylate kinase; Pro 96.6 0.0022 4.8E-08 66.4 4.8 31 398-428 4-34 (215)
407 cd02020 CMPK Cytidine monophos 96.6 0.0019 4E-08 61.9 3.9 30 400-429 2-31 (147)
408 cd01394 radB RadB. The archaea 96.6 0.014 3E-07 60.3 10.6 36 396-431 18-56 (218)
409 PRK05973 replicative DNA helic 96.6 0.0097 2.1E-07 62.6 9.4 109 396-511 63-191 (237)
410 cd00227 CPT Chloramphenicol (C 96.6 0.0019 4.2E-08 64.5 4.0 31 397-427 2-32 (175)
411 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0023 5E-08 64.1 4.5 32 397-428 3-34 (188)
412 cd01122 GP4d_helicase GP4d_hel 96.6 0.0082 1.8E-07 64.1 9.0 38 395-432 28-69 (271)
413 cd01428 ADK Adenylate kinase ( 96.6 0.002 4.4E-08 64.9 4.1 29 400-428 2-30 (194)
414 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0043 9.4E-08 65.7 6.7 31 400-430 2-35 (249)
415 cd03246 ABCC_Protease_Secretio 96.6 0.0046 1E-07 61.7 6.6 26 396-421 27-52 (173)
416 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.012 2.6E-07 61.9 9.9 37 395-431 19-58 (237)
417 cd03222 ABC_RNaseL_inhibitor T 96.6 0.016 3.4E-07 58.4 10.3 104 396-512 24-131 (177)
418 smart00534 MUTSac ATPase domai 96.6 0.017 3.6E-07 58.5 10.6 19 400-418 2-20 (185)
419 PRK12727 flagellar biosynthesi 96.6 0.019 4.1E-07 66.7 12.1 39 396-434 349-392 (559)
420 PRK12724 flagellar biosynthesi 96.5 0.018 4E-07 65.2 11.6 39 397-435 223-265 (432)
421 PRK12337 2-phosphoglycerate ki 96.5 0.028 6.1E-07 64.3 13.1 29 396-424 254-282 (475)
422 cd01130 VirB11-like_ATPase Typ 96.5 0.0084 1.8E-07 60.7 8.1 26 397-422 25-50 (186)
423 smart00487 DEXDc DEAD-like hel 96.5 0.0069 1.5E-07 59.8 7.4 40 473-513 130-170 (201)
424 TIGR02533 type_II_gspE general 96.5 0.0086 1.9E-07 69.6 9.2 52 350-422 216-267 (486)
425 TIGR00767 rho transcription te 96.5 0.0066 1.4E-07 68.2 7.8 27 396-422 167-193 (415)
426 COG4619 ABC-type uncharacteriz 96.5 0.015 3.3E-07 57.4 9.3 26 396-421 28-53 (223)
427 PRK10867 signal recognition pa 96.5 0.068 1.5E-06 61.2 16.2 41 396-436 99-143 (433)
428 PF05272 VirE: Virulence-assoc 96.5 0.014 3E-07 60.0 9.6 93 363-497 27-120 (198)
429 TIGR01313 therm_gnt_kin carboh 96.5 0.0022 4.8E-08 63.1 3.6 28 400-427 1-28 (163)
430 PRK06547 hypothetical protein; 96.5 0.003 6.4E-08 63.3 4.5 34 396-429 14-47 (172)
431 cd03284 ABC_MutS1 MutS1 homolo 96.5 0.011 2.3E-07 61.5 8.8 22 398-419 31-52 (216)
432 TIGR01420 pilT_fam pilus retra 96.5 0.022 4.7E-07 63.5 11.7 26 397-422 122-147 (343)
433 cd03228 ABCC_MRP_Like The MRP 96.5 0.017 3.7E-07 57.5 9.9 26 396-421 27-52 (171)
434 TIGR03499 FlhF flagellar biosy 96.5 0.011 2.4E-07 63.9 9.2 39 396-434 193-236 (282)
435 PRK13948 shikimate kinase; Pro 96.5 0.0034 7.4E-08 63.5 4.8 34 396-429 9-42 (182)
436 COG0703 AroK Shikimate kinase 96.5 0.0024 5.3E-08 63.5 3.7 32 398-429 3-34 (172)
437 PRK13826 Dtr system oriT relax 96.4 0.02 4.3E-07 72.0 12.3 107 397-513 397-506 (1102)
438 PF00493 MCM: MCM2/3/5 family 96.4 0.0019 4E-08 71.6 3.1 159 344-528 16-201 (331)
439 PRK13946 shikimate kinase; Pro 96.4 0.0028 6.1E-08 64.0 4.2 33 397-429 10-42 (184)
440 PRK03731 aroL shikimate kinase 96.4 0.0033 7.2E-08 62.3 4.6 32 398-429 3-34 (171)
441 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.024 5.1E-07 55.0 10.3 26 396-421 25-50 (144)
442 PF13086 AAA_11: AAA domain; P 96.4 0.0029 6.4E-08 64.9 4.3 23 399-421 19-41 (236)
443 COG2842 Uncharacterized ATPase 96.4 0.017 3.7E-07 61.9 9.9 168 397-577 94-273 (297)
444 COG1485 Predicted ATPase [Gene 96.4 0.011 2.4E-07 64.8 8.5 123 394-533 62-204 (367)
445 TIGR03878 thermo_KaiC_2 KaiC d 96.4 0.014 3.1E-07 62.3 9.3 37 395-431 34-73 (259)
446 PTZ00088 adenylate kinase 1; P 96.4 0.0031 6.6E-08 66.2 4.2 32 398-429 7-38 (229)
447 PTZ00293 thymidine kinase; Pro 96.4 0.015 3.2E-07 60.0 9.0 99 397-511 4-111 (211)
448 TIGR01447 recD exodeoxyribonuc 96.4 0.0075 1.6E-07 71.7 7.8 24 398-421 161-184 (586)
449 PF13245 AAA_19: Part of AAA d 96.4 0.006 1.3E-07 52.7 5.2 25 397-421 10-35 (76)
450 PRK02496 adk adenylate kinase; 96.4 0.0034 7.3E-08 63.2 4.2 30 399-428 3-32 (184)
451 TIGR01613 primase_Cterm phage/ 96.4 0.021 4.5E-07 62.5 10.6 141 355-532 47-203 (304)
452 PRK13833 conjugal transfer pro 96.4 0.016 3.6E-07 63.7 9.7 25 397-421 144-168 (323)
453 PRK04040 adenylate kinase; Pro 96.3 0.004 8.7E-08 63.3 4.5 31 397-427 2-34 (188)
454 cd03287 ABC_MSH3_euk MutS3 hom 96.3 0.028 6E-07 58.8 10.8 23 397-419 31-53 (222)
455 TIGR00064 ftsY signal recognit 96.3 0.066 1.4E-06 57.7 13.9 40 396-435 71-113 (272)
456 PRK10436 hypothetical protein; 96.3 0.019 4.2E-07 66.2 10.4 50 352-422 194-243 (462)
457 PF00488 MutS_V: MutS domain V 96.3 0.032 7E-07 58.8 11.3 25 397-421 43-67 (235)
458 PRK05057 aroK shikimate kinase 96.3 0.0045 9.7E-08 62.0 4.5 34 397-430 4-37 (172)
459 PF00625 Guanylate_kin: Guanyl 96.3 0.019 4.2E-07 57.8 9.2 29 397-425 2-30 (183)
460 PLN02200 adenylate kinase fami 96.3 0.0046 1E-07 65.1 4.8 32 396-427 42-73 (234)
461 PRK14527 adenylate kinase; Pro 96.3 0.0035 7.6E-08 63.6 3.8 32 396-427 5-36 (191)
462 PRK09376 rho transcription ter 96.3 0.0086 1.9E-07 67.0 7.0 26 397-422 169-194 (416)
463 PRK09354 recA recombinase A; P 96.3 0.019 4.1E-07 63.7 9.7 109 395-510 58-194 (349)
464 TIGR02858 spore_III_AA stage I 96.2 0.0052 1.1E-07 66.0 5.1 26 397-422 111-136 (270)
465 COG1066 Sms Predicted ATP-depe 96.2 0.029 6.3E-07 62.6 10.8 107 396-511 92-218 (456)
466 PF13479 AAA_24: AAA domain 96.2 0.0098 2.1E-07 61.6 6.9 76 397-484 3-80 (213)
467 TIGR01351 adk adenylate kinase 96.2 0.0042 9.1E-08 64.0 4.0 29 400-428 2-30 (210)
468 PRK13894 conjugal transfer ATP 96.2 0.022 4.8E-07 62.7 9.8 25 397-421 148-172 (319)
469 PRK00279 adk adenylate kinase; 96.2 0.0045 9.8E-08 64.0 4.2 30 399-428 2-31 (215)
470 PRK08154 anaerobic benzoate ca 96.2 0.01 2.2E-07 65.1 7.0 34 396-429 132-165 (309)
471 PRK01184 hypothetical protein; 96.2 0.0056 1.2E-07 61.5 4.6 30 398-428 2-31 (184)
472 PF13238 AAA_18: AAA domain; P 96.2 0.0039 8.5E-08 58.0 3.2 22 400-421 1-22 (129)
473 cd01393 recA_like RecA is a b 96.2 0.036 7.7E-07 57.5 10.6 37 396-432 18-63 (226)
474 PRK10416 signal recognition pa 96.2 0.056 1.2E-06 59.5 12.6 36 396-431 113-151 (318)
475 TIGR02760 TraI_TIGR conjugativ 96.1 0.019 4E-07 76.9 10.3 109 397-514 1036-1151(1960)
476 cd03223 ABCD_peroxisomal_ALDP 96.1 0.047 1E-06 54.1 10.9 26 396-421 26-51 (166)
477 PRK04182 cytidylate kinase; Pr 96.1 0.0057 1.2E-07 60.7 4.3 29 399-427 2-30 (180)
478 PF08433 KTI12: Chromatin asso 96.1 0.0059 1.3E-07 65.6 4.6 32 398-429 2-36 (270)
479 TIGR03881 KaiC_arch_4 KaiC dom 96.1 0.054 1.2E-06 56.4 11.8 35 396-430 19-56 (229)
480 cd03247 ABCC_cytochrome_bd The 96.1 0.04 8.7E-07 55.1 10.3 26 396-421 27-52 (178)
481 cd01125 repA Hexameric Replica 96.1 0.033 7.2E-07 58.6 10.1 36 399-434 3-53 (239)
482 PRK04328 hypothetical protein; 96.1 0.033 7.1E-07 59.2 10.1 35 396-430 22-59 (249)
483 TIGR03263 guanyl_kin guanylate 96.1 0.019 4.2E-07 57.2 7.9 26 398-423 2-27 (180)
484 PRK14529 adenylate kinase; Pro 96.0 0.033 7.1E-07 58.2 9.5 29 399-427 2-30 (223)
485 PHA02530 pseT polynucleotide k 96.0 0.0065 1.4E-07 66.0 4.5 30 398-427 3-33 (300)
486 cd03237 ABC_RNaseL_inhibitor_d 96.0 0.068 1.5E-06 56.7 12.1 26 396-421 24-49 (246)
487 PF00270 DEAD: DEAD/DEAH box h 96.0 0.016 3.5E-07 56.6 6.9 41 473-513 120-162 (169)
488 COG1419 FlhF Flagellar GTP-bin 96.0 0.071 1.5E-06 59.8 12.5 25 397-421 203-227 (407)
489 cd03229 ABC_Class3 This class 96.0 0.037 8E-07 55.5 9.6 26 396-421 25-50 (178)
490 KOG0922 DEAH-box RNA helicase 96.0 0.028 6.1E-07 65.7 9.7 27 397-423 66-92 (674)
491 TIGR02173 cyt_kin_arch cytidyl 96.0 0.0071 1.5E-07 59.6 4.3 29 399-427 2-30 (171)
492 cd03230 ABC_DR_subfamily_A Thi 96.0 0.044 9.6E-07 54.6 10.0 26 396-421 25-50 (173)
493 cd02019 NK Nucleoside/nucleoti 96.0 0.0084 1.8E-07 50.6 4.1 22 400-421 2-23 (69)
494 TIGR02538 type_IV_pilB type IV 96.0 0.028 6.1E-07 66.7 9.9 50 352-422 292-341 (564)
495 TIGR02760 TraI_TIGR conjugativ 95.9 0.055 1.2E-06 72.5 13.4 110 396-512 445-566 (1960)
496 PRK00300 gmk guanylate kinase; 95.9 0.039 8.4E-07 56.3 9.5 27 396-422 4-30 (205)
497 PF06745 KaiC: KaiC; InterPro 95.9 0.019 4.2E-07 59.6 7.3 110 395-511 17-159 (226)
498 cd03215 ABC_Carb_Monos_II This 95.9 0.0089 1.9E-07 60.1 4.6 26 396-421 25-50 (182)
499 PRK14721 flhF flagellar biosyn 95.9 0.063 1.4E-06 61.2 11.8 26 396-421 190-215 (420)
500 TIGR02525 plasmid_TraJ plasmid 95.9 0.075 1.6E-06 59.7 12.3 24 398-421 150-173 (372)
No 1
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=100.00 E-value=2.5e-55 Score=520.20 Aligned_cols=572 Identities=31% Similarity=0.440 Sum_probs=432.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCc
Q 003873 187 KDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266 (790)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ 266 (790)
..+.++..++.|.+.++|+.|.+|++||.++.+.|..++.+++.+|+.++.+++.+|+++++|+++++.|++.++++.|+
T Consensus 156 ~~k~~p~~k~~~~~~~~~~s~~~~~~tg~ld~~~~~s~~~~~k~~~~~~~~~ls~kt~~s~~~~e~~~~kle~~~~~~~~ 235 (871)
T KOG1968|consen 156 ELKKNPEEKPTPLDWSKPLSGIKFTPTGVLDDIGTGSAEPSLKEFGASKTESLSDKTVESCLGDEAIAKKLEKIKELEIP 235 (871)
T ss_pred ccccCccccCCcccccCCCcCceeeecCcccccccccchhhhhhccccccccCCCCcceeecCccccchhhccccccccc
Confidence 34467788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCHHHHHHHHhhcCCch----HHHHHhhhhhHHHHHhcCCCCCCchhhhcccCCCCCcccc-ccccCCCCCCCCCcCCC
Q 003873 267 FLTEDGLFDMIRASKPMK----ALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIER-MKTVASPAKRKGQNIQQ 341 (790)
Q Consensus 267 ii~e~~f~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 341 (790)
++.|+ +...+... +.. +.+.....+. +....+ +....+.. . ......+. ......-.... .....
T Consensus 236 ~~~e~-~~~~~~~~-~~~~~~~~kvk~a~~~~-e~~e~~----s~~~~e~~-t-~~~~~~~~~~~~~~~~~~~~-P~~~~ 305 (871)
T KOG1968|consen 236 VLLEE-RKELFAPL-LALQKDEPKVKKARRKS-EEGETS----SSKKAEKP-T-ARKRKSNKVIQFSEPRKAYS-PAKSS 305 (871)
T ss_pred ccchh-hhhhhcch-hcccCCcccchhhhhhh-hhhccc----cccccccc-c-cccccccchhcccccccccC-Ccccc
Confidence 99999 65554321 111 1111100000 000000 00000000 0 00000000 00000000000 01122
Q ss_pred ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCc-EEEEECCCCCChHHHHHHHHHH
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK-AAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~-~lLLsGPpGtGKTTlA~~lAke 420 (790)
....|++||+|+...+++|+......+..||..|++. -....+... .....+ +++++||||+|||++++++|++
T Consensus 306 ~~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~-~~~sy~~~~----~~ss~~~~~l~~G~pGigKT~~~h~~~k~ 380 (871)
T KOG1968|consen 306 EGAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDK-EKSSYKENE----PDSSKKKALLLSGPPGIGKTTAAHKAAKE 380 (871)
T ss_pred cccccccccccccHHhhhcccchhhhhhhHHHhhhcc-ccccccccC----cchhhHHHHHhcCCCCCCchhhHhhhhhh
Confidence 3689999999999999999999999999999999553 111111111 111223 6899999999999999999999
Q ss_pred hCCcEEEEeCCCCCCchhhhhhcccCC-CchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHh
Q 003873 421 LGFQAIEVNASDSRGKADAKISKGIGG-SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI 499 (790)
Q Consensus 421 lg~~iiEinaSd~rsk~~~~i~~~~g~-s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i 499 (790)
+|+.++|.|+++.|++.. +...++. .....+...+.. ... .........||||||+|.|+.++++++..+...+
T Consensus 381 ~g~~v~E~Nas~~RSk~~--l~~~~~~~~~s~si~~~~~~--~~~-~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~ 455 (871)
T KOG1968|consen 381 LGFKVVEKNASDVRSKKE--LLNKLGNATSSHSIKGSKKK--KGN-RQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLC 455 (871)
T ss_pred cccceeecCccccccccH--HHhhhhccccccchhhhhcc--ccc-ccccccceeEEEEeccccccchhhhhHHHHHHHH
Confidence 999999999999998753 2222222 122223333311 000 0111233459999999999999999999999999
Q ss_pred hcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 003873 500 KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579 (790)
Q Consensus 500 ~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~ 579 (790)
+.+..||||||||+.+...+++.+.|+.++|..|..+.+..+|+.+|..|++.|++..++.|++.++||||++|++||+|
T Consensus 456 ~ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 456 KKSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFW 535 (871)
T ss_pred HhccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhccCC---CcccHHHHHhhcCCCcchHHHHHHHHhhhhcCCCCCCc
Q 003873 580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG---GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRD 656 (790)
Q Consensus 580 ~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~~~~---~~~~~~e~id~~~~d~~~~~l~i~ENYl~~~~~~~~~~ 656 (790)
+..............+....++..+..|++..++|.+.+ .....++..++||.|+.+.|+++++||+++.+.... .
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~L~~~~~~s~~~~~~~k~~~~~ed~~~~p~~v~~n~~~~~~~~~~-~ 614 (871)
T KOG1968|consen 536 SLSKPAELPKKKGTPIKTSKKNITVKDFDAAEGLLDISRVASEETSNQSKAELYFEDYSISPLKVQENYLQVLPRSMK-Q 614 (871)
T ss_pred hccchhhhccccCccccccccccccchhHHHhhhccHhhhhhhhhhccchHHHhccccccchhhcchhhhcccchhhh-h
Confidence 876332111111122333457888899999999998321 223567789999999999999999999999887432 2
Q ss_pred hHHhHHHHHHHHHhcChhhHhhhHhhcc-cccchhcccchhhcccchhhhccCcchhcccccccccccchhhhhchhhHH
Q 003873 657 EVKRLSLIARAAESISDGDIFNVQIRRN-QQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKN 735 (790)
Q Consensus 657 ~~~~l~~~~~aad~lS~aD~v~~~i~~~-q~wsL~~~~~~~ssv~p~~~~~g~~~~~~~g~~~~~~Fp~wlgk~s~~~K~ 735 (790)
...+++.+++++|+||.+|++...+++- +.|.|+++|++++.+.|+..+.|... +.+.||+|+++|++.++.
T Consensus 615 ~~~~l~~~~~~ad~is~~d~~~~~~r~~~~~~~L~~~~a~~s~~~p~~~~~~~~~-------~~i~f~~~~~~~sk~~~~ 687 (871)
T KOG1968|consen 615 ILDELEDVSEAADSISLGDLRPKSIRGPELDWKLNPLHAVDSKVLPASKVGGHLL-------FRLGFPQWLGENSKSGKL 687 (871)
T ss_pred hHHHHHHHhhhhhhhhhhhhcchhhcCccchhhhhhhhhhhhhhcchhhhhhccc-------cccccccccCccccccch
Confidence 2367889999999999999999999985 55999999999999999997777643 346799999999999999
Q ss_pred HHHHHHHHHhhccccccccCchhhhhccHHHHHHHhchhhhcCCcchHHHhhhc
Q 003873 736 LRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDELLRKLLS 789 (790)
Q Consensus 736 ~r~l~el~~~~~~~~~~~~~~~~~~~~Ylp~L~~~l~~pL~~~~~~~~v~~vi~ 789 (790)
.|++++++.|++.. .+..+..++.+|.|.+++.+..|+.... .|++..+|+
T Consensus 688 ~~~l~el~~h~~~~--~s~~~~~~~~~y~~i~~~~~~~~~~~~~-~d~~p~~i~ 738 (871)
T KOG1968|consen 688 KRFLQELLPHTRLK--QSANKARVRESYNPISRQFSPVPLALQS-KDGKPSAIE 738 (871)
T ss_pred hHHHHHhchhhhhh--hccchhhhhhhhhhhhhhccCCcccccc-CCCCchhHH
Confidence 99999999999875 4778899999999999999999999876 456666654
No 2
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=2.5e-49 Score=454.70 Aligned_cols=374 Identities=29% Similarity=0.457 Sum_probs=304.5
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
++|++||+|++++||+||+.+++.|..|+..|.+. ...+++||+|||||||||+|++||+++++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g----------------~~~~~lLL~GppG~GKTtla~ala~el~~ 65 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKG----------------KPKKALLLYGPPGVGKTSLAHALANDYGW 65 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcC----------------CCCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999998631 23689999999999999999999999999
Q ss_pred cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc-cchhHHHHHHHHhhcC
Q 003873 424 QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKIS 502 (790)
Q Consensus 424 ~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~-~~~~~l~~Ll~~i~~s 502 (790)
+++++|+++.++.. .+..++.......... ...+.||||||+|+|.. .+.+++..|++.++..
T Consensus 66 ~~ielnasd~r~~~--------------~i~~~i~~~~~~~sl~--~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~ 129 (482)
T PRK04195 66 EVIELNASDQRTAD--------------VIERVAGEAATSGSLF--GARRKLILLDEVDGIHGNEDRGGARAILELIKKA 129 (482)
T ss_pred CEEEEcccccccHH--------------HHHHHHHHhhccCccc--CCCCeEEEEecCcccccccchhHHHHHHHHHHcC
Confidence 99999999876532 3444443332211111 12568999999999986 5567788888888889
Q ss_pred CCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 003873 503 KIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS 582 (790)
Q Consensus 503 ~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~ 582 (790)
.+|||||||+.+....++|+++|..|.|.+|+..++..+|..+|..+++.+++++++.|++.++||+|.+||.||.++.+
T Consensus 130 ~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~ 209 (482)
T PRK04195 130 KQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEG 209 (482)
T ss_pred CCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 99999999987766556899999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCCCHHHHHHHHHhccCCCCCChHHHHHHHhccCCCcccHHHHHhhcCCCcchHHHHHHHHhhhhcCCCCCCchHHhHH
Q 003873 583 LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLS 662 (790)
Q Consensus 583 ~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~~~~~~~~~~e~id~~~~d~~~~~l~i~ENYl~~~~~~~~~~~~~~l~ 662 (790)
...++.++++... .++...++|++++.+|........+. .+.....|++.+++||+|||+..... ++
T Consensus 210 ~~~it~~~v~~~~---~~d~~~~if~~l~~i~~~k~~~~a~~-~~~~~~~~~~~i~~~l~en~~~~~~~---------~~ 276 (482)
T PRK04195 210 YGKLTLEDVKTLG---RRDREESIFDALDAVFKARNADQALE-ASYDVDEDPDDLIEWIDENIPKEYDD---------PE 276 (482)
T ss_pred CCCCcHHHHHHhh---cCCCCCCHHHHHHHHHCCCCHHHHHH-HHHcccCCHHHHHHHHHhccccccCC---------HH
Confidence 7889999887643 38888999999999997443221111 11112368999999999999876543 78
Q ss_pred HHHHHHHhcChhhHhhhHhhcccccchhcccchh--hcccchhhhccCcchhcccccccccccchhhhhchhhHHHHHHH
Q 003873 663 LIARAAESISDGDIFNVQIRRNQQWQLSQSSSLA--SCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLE 740 (790)
Q Consensus 663 ~~~~aad~lS~aD~v~~~i~~~q~wsL~~~~~~~--ssv~p~~~~~g~~~~~~~g~~~~~~Fp~wlgk~s~~~K~~r~l~ 740 (790)
.++.|+++||.||++...++..|+|+|++++..+ +.|.++ .... ..|+ ....||+||+++|++++.++.++
T Consensus 277 ~~~~a~~~ls~ad~~~~~~~~~~~~~l~~~~~~~m~~gv~~~---~~~~---~~~~-~~~~~p~~~~~~~~~~~~~~~~~ 349 (482)
T PRK04195 277 DIARAYDALSRADIFLGRVKRTQNYDLWRYASDLMTAGVALA---KEKK---KRGF-TRYQPPSYWRLLSKTKEKRETRD 349 (482)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcCCcchHHHHHHHhhhHHHHh---cccc---CCCC-CCcCCcHHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999999887543 223222 1111 1222 24689999999999999999999
Q ss_pred HHHHhhccccccccCchhhhhccHHHHHHHh
Q 003873 741 DLHFHHLASRKSKLGRDTLRLDYFSLLLKQL 771 (790)
Q Consensus 741 el~~~~~~~~~~~~~~~~~~~~Ylp~L~~~l 771 (790)
+|..+++. +.+.++..++.+|+|+|.-++
T Consensus 350 ~~~~~~~~--~~~~s~~~~~~~~~~~~~~~~ 378 (482)
T PRK04195 350 SIAKKIAE--KLHTSKRKVRREVLPFLSIIF 378 (482)
T ss_pred HHHHHHHH--HhCCCHHHHHHHHHHHHHHHH
Confidence 99999976 346778899999999997654
No 3
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=1.4e-43 Score=398.83 Aligned_cols=408 Identities=22% Similarity=0.362 Sum_probs=301.0
Q ss_pred ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccc----cCCC----------CcCccCCCcEEEEECCCC
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTK----RNGK----------KQNDASAEKAAILSGSPG 407 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k----~~~~----------~~~~~~~~~~lLLsGPpG 407 (790)
+..||||||+|+.|.||+|++...+.+..||+.|...+|+.... .++. ...+.+..+++|||||||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 34599999999999999999999999999999999999883211 1111 123346789999999999
Q ss_pred CChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc
Q 003873 408 MGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG 487 (790)
Q Consensus 408 tGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~ 487 (790)
.|||||||++|++.||.++|+||||.|+.. .+++.+..+...........++.||||||||+-...
T Consensus 337 lGKTTLAHViAkqaGYsVvEINASDeRt~~--------------~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~ 402 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQAGYSVVEINASDERTAP--------------MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA 402 (877)
T ss_pred CChhHHHHHHHHhcCceEEEecccccccHH--------------HHHHHHHHHHhhccccccCCCcceEEEecccCCcHH
Confidence 999999999999999999999999998753 345555554433332222367789999999998754
Q ss_pred chhHHHHHHHHh--------------------hcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHH
Q 003873 488 DRGGIADLIASI--------------------KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547 (790)
Q Consensus 488 ~~~~l~~Ll~~i--------------------~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~ 547 (790)
.-..++.+++.- +.-..||||||||.|.+.|++|+..|..+.|.+|+...+.++|+.||.
T Consensus 403 ~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~ 482 (877)
T KOG1969|consen 403 AVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICH 482 (877)
T ss_pred HHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHh
Confidence 444455554411 013469999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC----CCHHHHHHHHHhccCCCCCChHHHHHHHhccCCC--cc
Q 003873 548 AEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSV----IKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGG--KL 621 (790)
Q Consensus 548 ~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~----it~~~v~~~~~~~~kd~~ls~F~ai~ki~~~~~~--~~ 621 (790)
+|++.++..+|..|++.+++|||.+||.|||++..... ++...+. ..+.+.++...++|..+..||..... ..
T Consensus 483 rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~-a~~~~~k~~~~slf~~w~ei~ql~k~~~~r 561 (877)
T KOG1969|consen 483 RENMRADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLIC-AKNVGAKSNSDSLFSWWKEIFQLRKKDRHR 561 (877)
T ss_pred hhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhh-hhhhcccccccchHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999987544 3333332 34567899999999999999863221 12
Q ss_pred cHHHHH------hhcCCCcchHHHHHHHHhhhhcCCCCCCchHHhHHHHHHHHHhcChhhHhhhHhhcccccchhcccch
Q 003873 622 RMDERI------DLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSL 695 (790)
Q Consensus 622 ~~~e~i------d~~~~d~~~~~l~i~ENYl~~~~~~~~~~~~~~l~~~~~aad~lS~aD~v~~~i~~~q~wsL~~~~~~ 695 (790)
+.++.+ .....+.+.+....+.+|+...-...+ |..++.+++||-+-|.+...+++.|+|.|+.|..+
T Consensus 562 ~~~~~l~~l~~~~~l~~~servlqg~f~~~~~~~~~D~~------i~~~~~~s~WL~F~D~l~~~~~s~qn~eLlrY~~~ 635 (877)
T KOG1969|consen 562 SIDEQLYGLLNQVELHGNSERVLQGCFSIFLRLKYSDLG------IGKPANASDWLFFHDLLYQSMYSHQNWELLRYSPS 635 (877)
T ss_pred chHHHhhhhhhhhhccCchHHHHhhhhcccccccccccc------ccchhhhhhHHHhhhHHHHHHHhcCCeeecccccc
Confidence 222221 122244555556666666543222112 66789999999999999999999999999977643
Q ss_pred hhcccchhhhccCcchhcccccccccccc--hhhhhchhhHHHHHHHHHHHhhccccccccCchhhhhccHHHHHHHhch
Q 003873 696 ASCIIPAALMHGQRETLEQGERNFNRFGG--WLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTE 773 (790)
Q Consensus 696 ~ssv~p~~~~~g~~~~~~~g~~~~~~Fp~--wlgk~s~~~K~~r~l~el~~~~~~~~~~~~~~~~~~~~Ylp~L~~~l~~ 773 (790)
..+...++++... ...+-||. -..++. ....+..++.+.+.+...+.......++.+|.|++|+.+|.+
T Consensus 636 --~~l~fh~l~at~~------~~~i~~p~~~q~~~~k-l~~~~e~i~s~is~i~s~~~~~~~~ksllldli~~iL~il~P 706 (877)
T KOG1969|consen 636 --VPLHFHQLFATIA------NKRIIRPKNSQYEQRK-LKRANEDIVSLISRIISYQGPLAASKSLLLDLIFEILPILDP 706 (877)
T ss_pred --hhHHHHHHhcccC------CcccCCCchhHHHHHH-HHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHhcCC
Confidence 4555556666532 22344554 222222 222355666666655544433467789999999999999999
Q ss_pred hhhcCC
Q 003873 774 PLRVLP 779 (790)
Q Consensus 774 pL~~~~ 779 (790)
+|++.+
T Consensus 707 ~lkp~~ 712 (877)
T KOG1969|consen 707 TLKPVN 712 (877)
T ss_pred cccchh
Confidence 999875
No 4
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=100.00 E-value=3.1e-43 Score=402.15 Aligned_cols=410 Identities=23% Similarity=0.369 Sum_probs=283.1
Q ss_pred CccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHH
Q 003873 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 341 ~~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
..+++|+|||+|++++||+.|++++++|+.||+.... +....+.+||+||+||||||++++||++
T Consensus 4 ~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~---------------~~~~~~iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 4 DESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS---------------GSSPKRILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred cccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc---------------cCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999997321 1123569999999999999999999999
Q ss_pred hCCcEEEEe-CCCCCCchh--hhhhcc---c--CCCchhHHHHHHHHhhhhccc----cCCCCCceEEEEecCCCCCccc
Q 003873 421 LGFQAIEVN-ASDSRGKAD--AKISKG---I--GGSNANSIKELVSNEALSANM----DRSKHPKTVLIMDEVDGMSAGD 488 (790)
Q Consensus 421 lg~~iiEin-aSd~rsk~~--~~i~~~---~--g~s~~~~i~e~l~~a~~~~~~----~~~~~~~~VLIIDEiD~L~~~~ 488 (790)
+|+.++||. +...+.... ...... . ..+....|.+|+-.+..+... ......++||+|||+++++..+
T Consensus 69 lg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~ 148 (519)
T PF03215_consen 69 LGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD 148 (519)
T ss_pred hCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh
Confidence 999999985 443211100 000000 0 023345677773332222111 1123467899999999999877
Q ss_pred hhHHHHHHH-HhhcCCC-cEEEEeccc--c------h-------hhh-hhcc--ccccccccCCCCHHHHHHHHHHHHHH
Q 003873 489 RGGIADLIA-SIKISKI-PIICICNDR--Y------S-------QKL-KSLV--NYCSDLRFRKPRKQEIAKRLMQIANA 548 (790)
Q Consensus 489 ~~~l~~Ll~-~i~~s~~-pII~I~nd~--~------~-------~~l-~~L~--sR~~~I~F~~pt~~ei~~iL~~I~~~ 548 (790)
...++.++. ++....+ |+|+|+++. . . .++ +.++ .++..|.|+|++++.|++.|.+||..
T Consensus 149 ~~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~ 228 (519)
T PF03215_consen 149 TSRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKK 228 (519)
T ss_pred HHHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHH
Confidence 666776654 5566777 988877632 1 0 112 2333 34677999999999999999999999
Q ss_pred c-----CC-CCC--HHHHHHHHHHccCCHHHHHHHHHHHHhcC-C-------C--CCHHHH------------------H
Q 003873 549 E-----GL-EVN--EIALEELADRVNGDIRMAINQLQYMSLSL-S-------V--IKYDDI------------------R 592 (790)
Q Consensus 549 E-----gi-~i~--~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~-~-------~--it~~~v------------------~ 592 (790)
| +. .++ .++|+.|++.++||||.|||+|||+|..+ . . .....+ .
T Consensus 229 E~~~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~~g~~~~~~~k~g~~~~~~~v~~~~ks~~~~~~~~~~~~~ 308 (519)
T PF03215_consen 229 EARSSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCLKGDNNLRPKKKGFSLKADAVLSLSKSKRKSKPDTVKEES 308 (519)
T ss_pred HhhhhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhcCCCCCCCccccCCcccccceeccccCCCccccccccccc
Confidence 8 22 333 45699999999999999999999999821 0 0 000000 0
Q ss_pred HHHHhccCCCCCChHHHHHHHhccCCCc----------------------ccHHHHHhhcCCCcchHHHHHHHHhhhhcC
Q 003873 593 QRLLSSAKDEDISPFTAVDKLFGFNGGK----------------------LRMDERIDLSMSDPDLVPLLIQENYINYRP 650 (790)
Q Consensus 593 ~~~~~~~kd~~ls~F~ai~ki~~~~~~~----------------------~~~~e~id~~~~d~~~~~l~i~ENYl~~~~ 650 (790)
.......||..|++||+||||||+++.. ...++.++.+..|.++|.+||||||+.|+.
T Consensus 309 ~~~~i~~Rd~sL~lFHAlGKILynKR~~~~~~~~~~l~~~l~~~~R~~l~~~~e~vi~~s~~~~~~f~~~LhENY~~f~~ 388 (519)
T PF03215_consen 309 SLQSIGGRDESLSLFHALGKILYNKREPDDEVDSERLPSHLSHHERDPLLVDPEEVIEESHMDSSTFVLFLHENYLDFCS 388 (519)
T ss_pred ccccccccccchHHHHHhhhheeccccCCCccccccCcchhhhcccCccccCHHHHHHHhcCChHHHHHHHHHhccchhh
Confidence 1122357899999999999999965421 235677888889999999999999999985
Q ss_pred CCCCCchHHhHHHHHHHHHhcChhhHhhhHhhcccccchhcccchhhcccchhhhccCcch--h-----ccccccccccc
Q 003873 651 SSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRET--L-----EQGERNFNRFG 723 (790)
Q Consensus 651 ~~~~~~~~~~l~~~~~aad~lS~aD~v~~~i~~~q~wsL~~~~~~~ssv~p~~~~~g~~~~--~-----~~g~~~~~~Fp 723 (790)
. |++++.++|+||++|++...++.. +.+ ..+..++..++.|+.+... + ..++++ ..-|
T Consensus 389 ~---------i~~~~~~~d~LS~aD~l~~~~~~~--~~~---~~~~~s~a~rg~~~~n~~~~~~~~~~~~~~~~~-~~Kp 453 (519)
T PF03215_consen 389 D---------IEDASDASDYLSDADLLSSDWESR--SSL---REYRASVAVRGLMHSNRGKAFFPRQWKMRRFRP-LHKP 453 (519)
T ss_pred h---------HHHHHHHHHHhhHHHhccCccccc--hhH---HHHHHHHHhhhcchhccCcccCCCccccccccc-ccch
Confidence 4 999999999999999997644322 222 2233344444555333210 0 111111 2227
Q ss_pred chhhhhchhhHHHHHHHHHHHhhccccccccCchhhhhccHHHHHHHhchhhhcCCcchHHHhh
Q 003873 724 GWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDELLRKL 787 (790)
Q Consensus 724 ~wlgk~s~~~K~~r~l~el~~~~~~~~~~~~~~~~~~~~Ylp~L~~~l~~pL~~~~~~~~v~~v 787 (790)
+|++.+.....+.+..+.+...... ..-.+..+++|+| ..+..||+.....+.||+|
T Consensus 454 q~~~~~~~~~~~~~~~~~~~~~~~l------~~l~~~~~~~~~l-~~~~~~~~~~~~i~~~~~i 510 (519)
T PF03215_consen 454 QWFGYYKPYIENCLAAKSLFLDYCL------PPLCLQTELLPYL-AKLTDPMRNDAQIDFLQRI 510 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------hhhccchhhHHHH-HHccccccChhhhHHHHHh
Confidence 8999998888888777776554322 1224556788888 7889999998888888876
No 5
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.2e-36 Score=353.40 Aligned_cols=412 Identities=20% Similarity=0.300 Sum_probs=279.8
Q ss_pred CCCccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHH
Q 003873 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVC 418 (790)
Q Consensus 339 ~~~~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lA 418 (790)
....+.+|++||+|++++||+||++.++.|+.||..+.. .....+.++|+|||||||||+++++|
T Consensus 67 ~~~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~---------------~~~~~~illL~GP~GsGKTTl~~~la 131 (637)
T TIGR00602 67 NLDGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVL---------------ENAPKRILLITGPSGCGKSTTIKILS 131 (637)
T ss_pred cccccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc---------------ccCCCcEEEEECCCCCCHHHHHHHHH
Confidence 345678999999999999999999999999999988421 11234679999999999999999999
Q ss_pred HHhCCcEEEE-eCCCCCCchh-h----hhhccc--CCCchhHHHHHHHHhhhhccc--cCCCCCceEEEEecCCCCCccc
Q 003873 419 QMLGFQAIEV-NASDSRGKAD-A----KISKGI--GGSNANSIKELVSNEALSANM--DRSKHPKTVLIMDEVDGMSAGD 488 (790)
Q Consensus 419 kelg~~iiEi-naSd~rsk~~-~----~i~~~~--g~s~~~~i~e~l~~a~~~~~~--~~~~~~~~VLIIDEiD~L~~~~ 488 (790)
+++++.++|| |+........ . .+...+ ..+....|++++..+...... ......+.||||||+|+++..+
T Consensus 132 ~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~ 211 (637)
T TIGR00602 132 KELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD 211 (637)
T ss_pred HHhhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh
Confidence 9999988884 4332211100 0 000111 123456778888765421100 0113457899999999998876
Q ss_pred hhHHHHHHH--HhhcCCCcEEEEecccch------h-------hh-hhccc--cccccccCCCCHHHHHHHHHHHHHHcC
Q 003873 489 RGGIADLIA--SIKISKIPIICICNDRYS------Q-------KL-KSLVN--YCSDLRFRKPRKQEIAKRLMQIANAEG 550 (790)
Q Consensus 489 ~~~l~~Ll~--~i~~s~~pII~I~nd~~~------~-------~l-~~L~s--R~~~I~F~~pt~~ei~~iL~~I~~~Eg 550 (790)
...++.++. ..+...+|||+|+++... . ++ +.|++ |+..|.|+|++.++|.++|.+||..|+
T Consensus 212 ~~~lq~lLr~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~ 291 (637)
T TIGR00602 212 TRALHEILRWKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEA 291 (637)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 677888877 345778999999986432 1 11 46765 677799999999999999999999875
Q ss_pred CC------C-CHHHHHHHHHHccCCHHHHHHHHHHHHhcCC---------CCCHHHHHH--------------HH-Hhcc
Q 003873 551 LE------V-NEIALEELADRVNGDIRMAINQLQYMSLSLS---------VIKYDDIRQ--------------RL-LSSA 599 (790)
Q Consensus 551 i~------i-~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~---------~it~~~v~~--------------~~-~~~~ 599 (790)
.. + +++++..|+..++||+|+|||+||++|..+. .++...+.. .+ ....
T Consensus 292 ~~~~~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~~l~~~~~ 371 (637)
T TIGR00602 292 KKNGEKIKVPKKTSVELLCQGCSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNENQEIQALGG 371 (637)
T ss_pred hccccccccCCHHHHHHHHHhCCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhHHHHHhhcc
Confidence 42 2 4689999999999999999999999977531 233333221 12 2367
Q ss_pred CCCCCChHHHHHHHhccCCCccc----------------------HHHHHhhcCCCcc-hHHHHHHHHhhhhcCCCCCCc
Q 003873 600 KDEDISPFTAVDKLFGFNGGKLR----------------------MDERIDLSMSDPD-LVPLLIQENYINYRPSSAGRD 656 (790)
Q Consensus 600 kd~~ls~F~ai~ki~~~~~~~~~----------------------~~e~id~~~~d~~-~~~l~i~ENYl~~~~~~~~~~ 656 (790)
+|..|++||++||++|+++.... ..+.++.+..+.. .|.+++||||+.|+..
T Consensus 372 rd~sl~lfhalgkily~Kr~~~~~~~~~~~p~~l~~~~r~~l~~~~~~v~e~~~~~~~~~f~~~lheny~~f~~~----- 446 (637)
T TIGR00602 372 KDVSLFLFRALGKILYCKRATLNELDSPRLPSHLSELSRDTLMVGPEEVVEMSHMPGDKTFNLYSHQNYNDFFVE----- 446 (637)
T ss_pred ccchhHHHHHhChhhcccccCccccccCccchhhhhhcccchhcChHhhhhhccccHHHHHHHHHhcccchhhhh-----
Confidence 89999999999999997654321 1233444444444 8999999999988765
Q ss_pred hHHhHHHHHHHHHhcChhhHhhhHhhcccccchhcccc-hhhcccchhhhccCcchhc---ccc-ccc--ccccchhhhh
Q 003873 657 EVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSS-LASCIIPAALMHGQRETLE---QGE-RNF--NRFGGWLGKN 729 (790)
Q Consensus 657 ~~~~l~~~~~aad~lS~aD~v~~~i~~~q~wsL~~~~~-~~ssv~p~~~~~g~~~~~~---~g~-~~~--~~Fp~wlgk~ 729 (790)
++.+..++++||++|++.. +|....+.. +.+.+..+++|+.+....- +++ .+| ..-|+|+--+
T Consensus 447 ----~~~~~~~~~~ls~~D~l~~------d~~~~~l~~~~~~~~~~r~~m~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 516 (637)
T TIGR00602 447 ----FDDEVKASEFLNFADILSG------DWNTRSLLREYSTSSARRGVMHSNKARGIAHCQGGKSSFRPLHKPQWFLIS 516 (637)
T ss_pred ----hhHHHHHHHHhhHHHhccc------chhhhhhhcccceeeeeeeEEEecCCccchhcccCccccccccchhhhhhh
Confidence 8899999999999999876 454432221 2335566666766543111 111 111 2237898888
Q ss_pred chhhHHHHHHHHHHHhhccccccccCchhhhhccHHHHHHHhchhhhcCCcchHHH
Q 003873 730 STMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDELLR 785 (790)
Q Consensus 730 s~~~K~~r~l~el~~~~~~~~~~~~~~~~~~~~Ylp~L~~~l~~pL~~~~~~~~v~ 785 (790)
++++.+...-+++..+--. ......|..+++|++ -.+.-|++.......||
T Consensus 517 ~~~~~~~~~~~~~~~v~~~----~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~ 567 (637)
T TIGR00602 517 KKYRENCLAAKALFKVEDF----CLPADCLQTQLLPYL-ALDTIPMRNDAQISFID 567 (637)
T ss_pred HHHHHHHHHHHHHhccccc----cchHHHhccccccee-ecccccccchhhhHHhh
Confidence 8888888888888644311 122456667777776 34444554433333333
No 6
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=2.8e-32 Score=300.63 Aligned_cols=343 Identities=21% Similarity=0.304 Sum_probs=238.0
Q ss_pred CccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHH
Q 003873 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 341 ~~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...++|+|||+|.+++||..|++++.+|+.||+.... +. .+-..+.+||+||+||||||++++||++
T Consensus 67 d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~--~~-----------~~l~~~iLLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 67 DEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAE--FT-----------PKLGSRILLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred cccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHH--hc-----------cCCCceEEEEeCCCCCCchhHHHHHHHh
Confidence 4568999999999999999999999999999994211 11 1124579999999999999999999999
Q ss_pred hCCcEEEEeCC-CCCCchh-hhhhccc---CCCchhHHHHHHHHhhhhc----cccCCCCCceEEEEecCCCCCcc-chh
Q 003873 421 LGFQAIEVNAS-DSRGKAD-AKISKGI---GGSNANSIKELVSNEALSA----NMDRSKHPKTVLIMDEVDGMSAG-DRG 490 (790)
Q Consensus 421 lg~~iiEinaS-d~rsk~~-~~i~~~~---g~s~~~~i~e~l~~a~~~~----~~~~~~~~~~VLIIDEiD~L~~~-~~~ 490 (790)
+|+.++||+.. ..+.... ....... ..+....++.|+..+..+. .+......+++|+|||+++.+.. +..
T Consensus 134 lg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~ 213 (634)
T KOG1970|consen 134 LGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSE 213 (634)
T ss_pred hCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHH
Confidence 99999998632 2221110 0000001 1223345666776653321 12222455679999999999886 566
Q ss_pred HHHHHHHH-hhcCCCcEEEEecccch-------h-hhh--hccccccccccCCCCHHHHHHHHHHHHHHcCCCCC-----
Q 003873 491 GIADLIAS-IKISKIPIICICNDRYS-------Q-KLK--SLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVN----- 554 (790)
Q Consensus 491 ~l~~Ll~~-i~~s~~pII~I~nd~~~-------~-~l~--~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~----- 554 (790)
.++.+|.. .....+|+|++.++... . ... ....|...|.|+|++++-|++.|.+||..+.....
T Consensus 214 ~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~ 293 (634)
T KOG1970|consen 214 TFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVP 293 (634)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCc
Confidence 67766653 35677887765443221 0 111 23467778999999999999999999999987766
Q ss_pred -HHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCC-------------------HH-HHHHHHH-hccCCCCCChHHHHH
Q 003873 555 -EIALEELADRVNGDIRMAINQLQYMSLSL-SVIK-------------------YD-DIRQRLL-SSAKDEDISPFTAVD 611 (790)
Q Consensus 555 -~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~-~~it-------------------~~-~v~~~~~-~~~kd~~ls~F~ai~ 611 (790)
...++.|+..++||||.|||.||+++..+ ..+. .+ ...+.+. ...+|+.+.+||+++
T Consensus 294 ~~~~v~~i~~~s~GDIRsAInsLQlssskg~~~~~~~ks~rs~~s~~~kg~~~~~~s~~nq~i~~ig~~de~L~~f~al~ 373 (634)
T KOG1970|consen 294 DTAEVELICQGSGGDIRSAINSLQLSSSKGENNLRPRKSGRSGKSDIGKGKSKRMESPENQELQSIGGRDESLFLFRALG 373 (634)
T ss_pred hhHHHHHHHHhcCccHHHHHhHhhhhcccCccCCCcccccccccchhhccccccccCchHHHHHHhhcchHHHHHHHhhc
Confidence 67899999999999999999999995331 0000 00 0012232 356899999999999
Q ss_pred HHhccCCCccc----------------------HHHHHhhcCCCcchHHHHHHHHhhhhcCCCCCCchHHhHHHHHHHHH
Q 003873 612 KLFGFNGGKLR----------------------MDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAE 669 (790)
Q Consensus 612 ki~~~~~~~~~----------------------~~e~id~~~~d~~~~~l~i~ENYl~~~~~~~~~~~~~~l~~~~~aad 669 (790)
++++.++.... -++.+..+.+....+..|+|+||++++.. ++.+..+++
T Consensus 374 ~~l~pkr~s~~~~~s~~~~~~~a~~~r~~L~~~peevl~~S~~~~~~~v~fl~~N~~~f~~n---------id~i~~~se 444 (634)
T KOG1970|consen 374 KVLYPKRNSDNELKSPRSPSHLAEYERDTLKHEPEEVLEMSHMQGGNFVRFLHQNYSDFFSN---------IDDIVRASE 444 (634)
T ss_pred ccccccccccccccccCCcchhhhhhhhhhhcCchhhhhhcccccchhhhhhhhccchhhhc---------ccceeeehh
Confidence 99985432111 13456667777889999999999999865 667888999
Q ss_pred hcChhhHhhhHhhcccccchhcccchhhcccchhhhccCc
Q 003873 670 SISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQR 709 (790)
Q Consensus 670 ~lS~aD~v~~~i~~~q~wsL~~~~~~~ssv~p~~~~~g~~ 709 (790)
++|.+|.+...+... +|-+ ..+.+.+..+++|+++.
T Consensus 445 ~~~~~d~~s~~w~~~-~~L~---~~y~~~~a~rsvm~~n~ 480 (634)
T KOG1970|consen 445 FLSFADQLSGDWNTR-QSLL---REYRTLIATRSVMNSNK 480 (634)
T ss_pred hhhHHHHhcccchhH-HHHH---HHHHHHHHHHHhhcccc
Confidence 999999988754332 2322 23444556677787764
No 7
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=100.00 E-value=6.6e-32 Score=280.62 Aligned_cols=224 Identities=30% Similarity=0.486 Sum_probs=182.3
Q ss_pred ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..+.|++||||++++|++||+.++..|++.+.. ....++|||||||||||++|+++|+++
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~--------------------~~lp~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLR--------------------RILPHYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhh--------------------cCCceEEeeCCCCCcHhHHHHHHHHHh
Confidence 567899999999999999999999999998886 245799999999999999999999999
Q ss_pred CC------cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHH
Q 003873 422 GF------QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADL 495 (790)
Q Consensus 422 g~------~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~L 495 (790)
++ .+.+.|+|+.|++.. +. .....+..+..... ..........+||||||+|.|+..+++++...
T Consensus 82 ~~~~~~~~rvl~lnaSderGisv--vr-----~Kik~fakl~~~~~--~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~ 152 (346)
T KOG0989|consen 82 NCEQLFPCRVLELNASDERGISV--VR-----EKIKNFAKLTVLLK--RSDGYPCPPFKIIILDECDSMTSDAQAALRRT 152 (346)
T ss_pred cCccccccchhhhcccccccccc--hh-----hhhcCHHHHhhccc--cccCCCCCcceEEEEechhhhhHHHHHHHHHH
Confidence 65 578899999998741 11 11112222221110 11122245568999999999999999999998
Q ss_pred HHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHH
Q 003873 496 IASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575 (790)
Q Consensus 496 l~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~ 575 (790)
++. ..-...+|+|||. ...+++++.+||..++|.++....+..+|+.||.+|++.+++++++.|++.++||+|.|+++
T Consensus 153 mE~-~s~~trFiLIcny-lsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~ 230 (346)
T KOG0989|consen 153 MED-FSRTTRFILICNY-LSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITT 230 (346)
T ss_pred Hhc-cccceEEEEEcCC-hhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 885 2334567889995 45667999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHH
Q 003873 576 LQYMSLSLSVIKYDDIRQRLL 596 (790)
Q Consensus 576 Lq~~~~~~~~it~~~v~~~~~ 596 (790)
||.++..+..|+...+.+.+.
T Consensus 231 Lqsls~~gk~It~~~~~e~~~ 251 (346)
T KOG0989|consen 231 LQSLSLLGKRITTSLVNEELA 251 (346)
T ss_pred HHHhhccCcccchHHHHHHHh
Confidence 999999888888655555444
No 8
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.97 E-value=9.4e-32 Score=268.71 Aligned_cols=217 Identities=29% Similarity=0.490 Sum_probs=185.8
Q ss_pred ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
-+.+|++||||..+.|||||+..++.|+-+... +..++++|+|||||||||.+.++|.++
T Consensus 13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~--------------------gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKE--------------------GNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred ccchHHHhhCchHHHHhhCCHHHHHHHHHHHHc--------------------CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 456799999999999999999999999888876 456899999999999999999999988
Q ss_pred -C--C--cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHH
Q 003873 422 -G--F--QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLI 496 (790)
Q Consensus 422 -g--~--~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll 496 (790)
| + -++|+|+||.|+.... .+.|+.|......- -.++.+|||+||+|.|..+++.++...+
T Consensus 73 LG~~~ke~vLELNASdeRGIDvV----------Rn~IK~FAQ~kv~l-----p~grhKIiILDEADSMT~gAQQAlRRtM 137 (333)
T KOG0991|consen 73 LGDSYKEAVLELNASDERGIDVV----------RNKIKMFAQKKVTL-----PPGRHKIIILDEADSMTAGAQQALRRTM 137 (333)
T ss_pred hChhhhhHhhhccCccccccHHH----------HHHHHHHHHhhccC-----CCCceeEEEeeccchhhhHHHHHHHHHH
Confidence 4 2 3789999999987421 25566665543211 1356689999999999999999999998
Q ss_pred HHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 003873 497 ASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576 (790)
Q Consensus 497 ~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~L 576 (790)
+. +...+.++++||. ...++.++.+||..++|..++..++..+|..+++.|++.++++.++.|+..+.||+|+++|+|
T Consensus 138 Ei-yS~ttRFalaCN~-s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnL 215 (333)
T KOG0991|consen 138 EI-YSNTTRFALACNQ-SEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNL 215 (333)
T ss_pred HH-Hcccchhhhhhcc-hhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHH
Confidence 85 5667889999996 566779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHH
Q 003873 577 QYMSLSLSVIKYDDIRQRL 595 (790)
Q Consensus 577 q~~~~~~~~it~~~v~~~~ 595 (790)
|....+-+.++.+.+-..+
T Consensus 216 Qst~~g~g~Vn~enVfKv~ 234 (333)
T KOG0991|consen 216 QSTVNGFGLVNQENVFKVC 234 (333)
T ss_pred HHHhccccccchhhhhhcc
Confidence 9988887888888776543
No 9
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.97 E-value=2.3e-30 Score=299.29 Aligned_cols=231 Identities=19% Similarity=0.292 Sum_probs=185.0
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.|++||||++|+|||||+.+++.|++||.. +..++.+||+||+||||||++++||+.++
T Consensus 3 Y~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~-------------------gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDG-------------------GRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred cHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhc-------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46799999999999999999999999999986 13467889999999999999999999998
Q ss_pred Cc------------------------EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEE
Q 003873 423 FQ------------------------AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478 (790)
Q Consensus 423 ~~------------------------iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLII 478 (790)
|. ++|+|+++.+ ..+.+++++....+... ..+++||||
T Consensus 64 Ce~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~r--------------gVDdIReLIe~a~~~P~----~gr~KVIII 125 (830)
T PRK07003 64 CETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNR--------------GVDEMAALLERAVYAPV----DARFKVYMI 125 (830)
T ss_pred CccCCCCCCCcccHHHHHHhcCCCceEEEecccccc--------------cHHHHHHHHHHHHhccc----cCCceEEEE
Confidence 63 3444433222 23567777776543322 356789999
Q ss_pred ecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 003873 479 DEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIAL 558 (790)
Q Consensus 479 DEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l 558 (790)
||+|.|+...++.|+++|+. ....+.||++||+ ...++.+|++||..|+|.+++.++|..+|.+||..|++.++++.+
T Consensus 126 DEah~LT~~A~NALLKtLEE-PP~~v~FILaTtd-~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL 203 (830)
T PRK07003 126 DEVHMLTNHAFNAMLKTLEE-PPPHVKFILATTD-PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQAL 203 (830)
T ss_pred eChhhCCHHHHHHHHHHHHh-cCCCeEEEEEECC-hhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999998777776666653 1346678888886 456678999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHH-HHHHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 559 EELADRVNGDIRMAINQL-QYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 559 ~~Ia~~s~GDiR~aIn~L-q~~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
..|++.++||+|.+|++| |.+......|+.+.+..++.....+ .+|+.+..++.
T Consensus 204 ~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~---~i~~ll~aL~~ 258 (830)
T PRK07003 204 RLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQT---YMVRLLDALAA 258 (830)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHH---HHHHHHHHHHc
Confidence 999999999999999996 6666667789999998876443333 26777777765
No 10
>PLN03025 replication factor C subunit; Provisional
Probab=99.97 E-value=1.6e-29 Score=276.45 Aligned_cols=232 Identities=27% Similarity=0.406 Sum_probs=181.8
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC-
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG- 422 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg- 422 (790)
.+|++||||++++|++||+++++.|+.|+.. ...+++||+|||||||||+|+++|+++.
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~--------------------~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARD--------------------GNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhc--------------------CCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3799999999999999999999999888775 2235799999999999999999999983
Q ss_pred ----CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHH
Q 003873 423 ----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIAS 498 (790)
Q Consensus 423 ----~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~ 498 (790)
..++++|+++.++.. .+++.+........ .......+||||||+|.|+...++++..+++.
T Consensus 61 ~~~~~~~~eln~sd~~~~~--------------~vr~~i~~~~~~~~-~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~ 125 (319)
T PLN03025 61 PNYKEAVLELNASDDRGID--------------VVRNKIKMFAQKKV-TLPPGRHKIVILDEADSMTSGAQQALRRTMEI 125 (319)
T ss_pred ccCccceeeecccccccHH--------------HHHHHHHHHHhccc-cCCCCCeEEEEEechhhcCHHHHHHHHHHHhc
Confidence 348899999876542 23333332111100 00123468999999999999888888887764
Q ss_pred hhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 003873 499 IKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578 (790)
Q Consensus 499 i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~ 578 (790)
. ...+.+|++||. ....+++|++||..++|.+++.+++..+|..+|.+||+.+++++++.|++.++||+|.++|.||.
T Consensus 126 ~-~~~t~~il~~n~-~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~ 203 (319)
T PLN03025 126 Y-SNTTRFALACNT-SSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQA 203 (319)
T ss_pred c-cCCceEEEEeCC-ccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 334568888886 45667899999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 579 MSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 579 ~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
+..+...|+.+.+.+... .......|..+..+..
T Consensus 204 ~~~~~~~i~~~~v~~~~~---~~~~~~i~~~i~~~~~ 237 (319)
T PLN03025 204 THSGFGFVNQENVFKVCD---QPHPLHVKNIVRNCLK 237 (319)
T ss_pred HHhcCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHc
Confidence 776666789888876432 2222345666666653
No 11
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=2.6e-29 Score=282.06 Aligned_cols=215 Identities=20% Similarity=0.317 Sum_probs=169.1
Q ss_pred ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..+.|++||||++|+|++||+.++..|+.|+..+ ..++++||+||+||||||+|+++|+.+
T Consensus 4 ~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~-------------------ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 4 THEVLSRKYRPQFFRDVIHQDLAIGALQNALKSG-------------------KIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred CcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcC-------------------CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568999999999999999999999999999872 235789999999999999999999999
Q ss_pred CCc------------------------EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEE
Q 003873 422 GFQ------------------------AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLI 477 (790)
Q Consensus 422 g~~------------------------iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLI 477 (790)
++. +++++++..+ ..+.+++++........ .+.++|+|
T Consensus 65 nce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~--------------gVd~IReL~e~l~~~p~----~g~~KV~I 126 (484)
T PRK14956 65 NCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNR--------------GIENIRELRDNVKFAPM----GGKYKVYI 126 (484)
T ss_pred CcccccCccccCCCcHHHHHHccCCccceeechhhcc--------------cHHHHHHHHHHHHhhhh----cCCCEEEE
Confidence 874 3333332211 13456776665443221 34678999
Q ss_pred EecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 003873 478 MDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIA 557 (790)
Q Consensus 478 IDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~ 557 (790)
|||+|.|+...+++|+..++. ....+.+|++|+ ....++++|++||..+.|.+++.+++..+|.++|..+|+.+++++
T Consensus 127 IDEah~Ls~~A~NALLKtLEE-Pp~~viFILaTt-e~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eA 204 (484)
T PRK14956 127 IDEVHMLTDQSFNALLKTLEE-PPAHIVFILATT-EFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEG 204 (484)
T ss_pred EechhhcCHHHHHHHHHHhhc-CCCceEEEeecC-ChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 999999988766666555542 112333344444 466677999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHH-HHhcCCCCCHHHHHHHH
Q 003873 558 LEELADRVNGDIRMAINQLQY-MSLSLSVIKYDDIRQRL 595 (790)
Q Consensus 558 l~~Ia~~s~GDiR~aIn~Lq~-~~~~~~~it~~~v~~~~ 595 (790)
+..|++.++||+|.++++|+. ++.....|+.+.+.+.+
T Consensus 205 L~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~l 243 (484)
T PRK14956 205 LFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 999999999999999999955 55555679999988766
No 12
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=9.2e-29 Score=283.91 Aligned_cols=290 Identities=20% Similarity=0.282 Sum_probs=210.2
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
+.|++||||++|+||+||+.+++.|.+|+.. +..++++||+||+|+||||+|+++|+.++|
T Consensus 3 ~~LarKyRPktFddVIGQe~vv~~L~~aI~~-------------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSALER-------------------GRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5799999999999999999999999999986 134689999999999999999999999987
Q ss_pred ------------------------cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEe
Q 003873 424 ------------------------QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMD 479 (790)
Q Consensus 424 ------------------------~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIID 479 (790)
+++++++++.+ ....+++++....+... .++++|+|||
T Consensus 64 ~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~--------------~VddIReli~~~~y~P~----~gk~KV~IID 125 (702)
T PRK14960 64 ETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRT--------------KVEDTRELLDNVPYAPT----QGRFKVYLID 125 (702)
T ss_pred CcCCCCCCCccCHHHHHHhcCCCCceEEecccccC--------------CHHHHHHHHHHHhhhhh----cCCcEEEEEe
Confidence 34555544322 24567888877654332 3467899999
Q ss_pred cCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 003873 480 EVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALE 559 (790)
Q Consensus 480 EiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~ 559 (790)
|+|.|+....+.++.+++.. ...+.+|++|++ ...++.++++||..+.|.+++.+++.++|.++|.++++.++++++.
T Consensus 126 EVh~LS~~A~NALLKtLEEP-P~~v~FILaTtd-~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~ 203 (702)
T PRK14960 126 EVHMLSTHSFNALLKTLEEP-PEHVKFLFATTD-PQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIW 203 (702)
T ss_pred chHhcCHHHHHHHHHHHhcC-CCCcEEEEEECC-hHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999987666666666532 245578888876 3445678999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHH-HHHHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhccCCCc--ccHHHHHhhcCCCc--
Q 003873 560 ELADRVNGDIRMAINQL-QYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK--LRMDERIDLSMSDP-- 634 (790)
Q Consensus 560 ~Ia~~s~GDiR~aIn~L-q~~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~~~~~~--~~~~e~id~~~~d~-- 634 (790)
.|++.++||+|.++|.| |.++.+.+.|+.+++..++....++ .+|+.+..++..+... ..+.+..... .|.
T Consensus 204 ~IA~~S~GdLRdALnLLDQaIayg~g~IT~edV~~lLG~~d~e---~IfdLldAI~k~d~~~al~~L~el~~~g-~d~~~ 279 (702)
T PRK14960 204 QIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLIDRT---IIYDLILAVHQNQREKVSQLLLQFRYQA-LDVSL 279 (702)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhccCCHH---HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCHHH
Confidence 99999999999999998 5566667789999999887644443 4778887776532211 1112222221 222
Q ss_pred --chHHHHHHHHhh-hhcCCCCCCchHHhHHHHHHHHHhcChhhH
Q 003873 635 --DLVPLLIQENYI-NYRPSSAGRDEVKRLSLIARAAESISDGDI 676 (790)
Q Consensus 635 --~~~~l~i~ENYl-~~~~~~~~~~~~~~l~~~~~aad~lS~aD~ 676 (790)
+.+-.+++++.+ .+.+...........+.+...+..+|..++
T Consensus 280 ~l~~Ll~~lrdlll~~~~~~~~~~~~~~~~~~~~~la~~~s~~~l 324 (702)
T PRK14960 280 VLDQLISTLHELALLQYLPELGLKYSEEINAKILQLSKLISAQDL 324 (702)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHcCCHHHH
Confidence 344556666664 344432111111223445556666777665
No 13
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=1.4e-28 Score=282.73 Aligned_cols=288 Identities=21% Similarity=0.338 Sum_probs=212.8
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.|++||||++|+|||||+.+++.|++|+.. +..++++||+||+||||||+|+++|+.++
T Consensus 3 y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~-------------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 3 HQVLARKWRPRCFQEVIGQAPVVRALSNALDQ-------------------QYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred chhHHHHHCCCCHHHhcCCHHHHHHHHHHHHh-------------------CCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999999999999986 13567899999999999999999999998
Q ss_pred Cc------------------------EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEE
Q 003873 423 FQ------------------------AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478 (790)
Q Consensus 423 ~~------------------------iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLII 478 (790)
|. ++|+++++. ...+.+++++....+... .++++|+||
T Consensus 64 c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~--------------~~v~~iR~l~~~~~~~p~----~~~~kV~iI 125 (509)
T PRK14958 64 CEKGVSANPCNDCENCREIDEGRFPDLFEVDAASR--------------TKVEDTRELLDNIPYAPT----KGRFKVYLI 125 (509)
T ss_pred CCCCCCcccCCCCHHHHHHhcCCCceEEEEccccc--------------CCHHHHHHHHHHHhhccc----cCCcEEEEE
Confidence 74 444444322 224568888877654332 456789999
Q ss_pred ecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 003873 479 DEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIAL 558 (790)
Q Consensus 479 DEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l 558 (790)
||+|.|+....++++..++.. ...+.+|++|++. ..++.++++||..++|.+++..++..+|..++.++|+.++++++
T Consensus 126 DE~~~ls~~a~naLLk~LEep-p~~~~fIlattd~-~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al 203 (509)
T PRK14958 126 DEVHMLSGHSFNALLKTLEEP-PSHVKFILATTDH-HKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAAL 203 (509)
T ss_pred EChHhcCHHHHHHHHHHHhcc-CCCeEEEEEECCh-HhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 999999987777766666632 2456677788763 45667899999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHH-HHHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhccCCCc-c-cHHHHHhhcCCC--
Q 003873 559 EELADRVNGDIRMAINQLQ-YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK-L-RMDERIDLSMSD-- 633 (790)
Q Consensus 559 ~~Ia~~s~GDiR~aIn~Lq-~~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~~~~~~-~-~~~e~id~~~~d-- 633 (790)
..|++.++||+|.+++.|+ .++.+.+.|+.++|.+++..... -.+|+.+..+..-+... + .++++++.. .|
T Consensus 204 ~~ia~~s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~---~~i~~ll~al~~~d~~~~l~~~~~l~~~g-~~~~ 279 (509)
T PRK14958 204 DLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEP---LLLFDILEALAAKAGDRLLGCVTRLVEQG-VDFS 279 (509)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCHH
Confidence 9999999999999999994 55555678999999987644333 34677777776422211 1 123333322 23
Q ss_pred ---cchHHHHHHHHhhhhcCCCCCCchHHhHHHHHHHHHhcChhhH
Q 003873 634 ---PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDI 676 (790)
Q Consensus 634 ---~~~~~l~i~ENYl~~~~~~~~~~~~~~l~~~~~aad~lS~aD~ 676 (790)
.+++.++.+-.+.++.|......+ .+.+...+..||..|+
T Consensus 280 ~il~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 322 (509)
T PRK14958 280 NALADLLSLLHQIAIIQTVPEALIEND---SEQLRQLAKLLDREDV 322 (509)
T ss_pred HHHHHHHHHHHHHHHHhhCccccccch---HHHHHHHHHhCCHHHH
Confidence 355666666666666665433222 3345555666777774
No 14
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=1.8e-28 Score=280.80 Aligned_cols=230 Identities=19% Similarity=0.300 Sum_probs=181.4
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.|.+||||++|+|||||+.+++.|++++..+ ..++++||+||+|+||||+|+.||+.++
T Consensus 3 y~vLarKYRPqtFddVIGQe~vv~~L~~al~~g-------------------RLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQQ-------------------RLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred chhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhC-------------------CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 568999999999999999999999999999873 3468899999999999999999999998
Q ss_pred Cc-----------------------------EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCc
Q 003873 423 FQ-----------------------------AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK 473 (790)
Q Consensus 423 ~~-----------------------------iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~ 473 (790)
|. ++++++++ ....+.+++++....+... .+++
T Consensus 64 C~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas--------------~~gVDdIReLie~~~~~P~----~gr~ 125 (700)
T PRK12323 64 CTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS--------------NRGVDEMAQLLDKAVYAPT----AGRF 125 (700)
T ss_pred CCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccc--------------cCCHHHHHHHHHHHHhchh----cCCc
Confidence 72 22232221 1235678888876654332 4567
Q ss_pred eEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCC
Q 003873 474 TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEV 553 (790)
Q Consensus 474 ~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i 553 (790)
+|+||||+|.|+....+.|++.|+. ...++.||++||+ ...++.+|++||..|.|.+++.+++.++|.++|..|++.+
T Consensus 126 KViIIDEah~Ls~~AaNALLKTLEE-PP~~v~FILaTte-p~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~ 203 (700)
T PRK12323 126 KVYMIDEVHMLTNHAFNAMLKTLEE-PPEHVKFILATTD-PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH 203 (700)
T ss_pred eEEEEEChHhcCHHHHHHHHHhhcc-CCCCceEEEEeCC-hHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC
Confidence 8999999999998776666665553 2245667777775 5667799999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHccCCHHHHHHHHH-HHHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHh
Q 003873 554 NEIALEELADRVNGDIRMAINQLQ-YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614 (790)
Q Consensus 554 ~~~~l~~Ia~~s~GDiR~aIn~Lq-~~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~ 614 (790)
+++++..|+..++|++|.++++|+ .++.+...|+.+.+.+++.....+. ++..+..++
T Consensus 204 d~eAL~~IA~~A~Gs~RdALsLLdQaia~~~~~It~~~V~~~LG~~d~~~---i~~Ll~aL~ 262 (700)
T PRK12323 204 EVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEAVRGMLGAIDQSY---LVRLLDALA 262 (700)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHH---HHHHHHHHH
Confidence 999999999999999999999985 5555667789988888764433332 344444444
No 15
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.96 E-value=4.7e-28 Score=280.54 Aligned_cols=305 Identities=22% Similarity=0.333 Sum_probs=210.2
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.|++||||++|+|||||+.+++.|++|+.. +..++++||+||+||||||+|++||+.++
T Consensus 3 y~vLarKYRP~tFddIIGQe~vv~~L~~ai~~-------------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDE-------------------GRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred chhHHHHhCCCCHHHHcCcHHHHHHHHHHHHc-------------------CCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 46799999999999999999999999999987 13468899999999999999999999987
Q ss_pred CcEE-EEeCCCCCCchhhhhhcc----------cCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhH
Q 003873 423 FQAI-EVNASDSRGKADAKISKG----------IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG 491 (790)
Q Consensus 423 ~~ii-EinaSd~rsk~~~~i~~~----------~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~ 491 (790)
|... ...++..+..+ ..+..+ ......+.+++++..+.+... ...++||||||+|.|+....+.
T Consensus 64 C~~~~~~~pCg~C~sC-r~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~----~gk~KVIIIDEad~Ls~~A~NA 138 (709)
T PRK08691 64 CENAQHGEPCGVCQSC-TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPT----AGKYKVYIIDEVHMLSKSAFNA 138 (709)
T ss_pred ccCCCCCCCCcccHHH-HHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhh----hCCcEEEEEECccccCHHHHHH
Confidence 6421 11111100000 000000 011224568888876544332 2456899999999998766666
Q ss_pred HHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHH
Q 003873 492 IADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571 (790)
Q Consensus 492 l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~ 571 (790)
|+..++. ....+.+|++|++ ...++.++++||..|.|.+++.+++..+|.++|.++|+.++++++..|++.++||+|.
T Consensus 139 LLKtLEE-Pp~~v~fILaTtd-~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 139 MLKTLEE-PPEHVKFILATTD-PHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRD 216 (709)
T ss_pred HHHHHHh-CCCCcEEEEEeCC-ccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHH
Confidence 6655553 1345678888876 4456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhccCCCc--ccHHHHHhhcCCCc-----chHHHHHHH
Q 003873 572 AINQLQY-MSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGK--LRMDERIDLSMSDP-----DLVPLLIQE 643 (790)
Q Consensus 572 aIn~Lq~-~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~~~~~~--~~~~e~id~~~~d~-----~~~~l~i~E 643 (790)
+++.|+. ++.+.+.|+.+.|..++....++ .+|+.+..++.-+... ..++++++..+ |. +++.++.+-
T Consensus 217 AlnLLDqaia~g~g~It~e~V~~lLG~~d~~---~If~LldAL~~~d~~~al~~l~~L~~~G~-d~~~~l~~L~~~l~~l 292 (709)
T PRK08691 217 ALSLLDQAIALGSGKVAENDVRQMIGAVDKQ---YLYELLTGIINQDGAALLAKAQEMAACAV-GFDNALGELAILLQQL 292 (709)
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHcccCHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 9999954 44456679999998877554333 4788888887533211 11233332221 22 333444444
Q ss_pred HhhhhcCCCCCCchHHhHHHHHHHHHhcChhhHhh
Q 003873 644 NYINYRPSSAGRDEVKRLSLIARAAESISDGDIFN 678 (790)
Q Consensus 644 NYl~~~~~~~~~~~~~~l~~~~~aad~lS~aD~v~ 678 (790)
.+.++.+.....+. ...+.+...+..+|..++..
T Consensus 293 ~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~l~~ 326 (709)
T PRK08691 293 ALIQAVPSALAHDD-PDSDILHRLAQTISGEQIQL 326 (709)
T ss_pred HHhhcCchhccccc-hHHHHHHHHHHcCCHHHHHH
Confidence 44444444222211 22455677778888888643
No 16
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.96 E-value=1.7e-27 Score=277.27 Aligned_cols=230 Identities=21% Similarity=0.317 Sum_probs=175.3
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.|.+||||++|+|||||+.+++.|.+.+.. +..++++||+||+||||||+|+++|+.++
T Consensus 3 y~~La~KyRP~~f~divGQe~vv~~L~~~l~~-------------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 3 YQVLARKWRPQTFAEVVGQEHVLTALANALDL-------------------GRLHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 56899999999999999999999999988876 13467899999999999999999999998
Q ss_pred CcEE-EEeCCCCCCchhhhhhcc-------cC---CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhH
Q 003873 423 FQAI-EVNASDSRGKADAKISKG-------IG---GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG 491 (790)
Q Consensus 423 ~~ii-EinaSd~rsk~~~~i~~~-------~g---~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~ 491 (790)
|... ..+++..+..+ ..+..+ +. ....+.+++++....+... .+.++|+||||+|.|+...++.
T Consensus 64 c~~~~~~~pCg~C~~C-~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~----~g~~KV~IIDEah~Ls~~a~NA 138 (647)
T PRK07994 64 CETGITATPCGECDNC-REIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPA----RGRFKVYLIDEVHMLSRHSFNA 138 (647)
T ss_pred hccCCCCCCCCCCHHH-HHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhh----cCCCEEEEEechHhCCHHHHHH
Confidence 7421 01111111000 011100 01 1234668888777554332 4567899999999999877777
Q ss_pred HHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHH
Q 003873 492 IADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571 (790)
Q Consensus 492 l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~ 571 (790)
|+.+++. ....+.||++|++ ...++.+|++||..|+|.+++.+++..+|.++|..+++.+++.++..|+..++||+|.
T Consensus 139 LLKtLEE-Pp~~v~FIL~Tt~-~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~ 216 (647)
T PRK07994 139 LLKTLEE-PPEHVKFLLATTD-PQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRD 216 (647)
T ss_pred HHHHHHc-CCCCeEEEEecCC-ccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 7776663 1234567777765 4456689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHhcCCCCCHHHHHHHHHhc
Q 003873 572 AINQLQ-YMSLSLSVIKYDDIRQRLLSS 598 (790)
Q Consensus 572 aIn~Lq-~~~~~~~~it~~~v~~~~~~~ 598 (790)
++++|+ .++.+...|+.+.+..++...
T Consensus 217 Al~lldqaia~~~~~it~~~v~~~lg~~ 244 (647)
T PRK07994 217 ALSLTDQAIASGNGQVTTDDVSAMLGTL 244 (647)
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHccC
Confidence 999995 455556779999988876543
No 17
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=5e-27 Score=272.97 Aligned_cols=244 Identities=20% Similarity=0.318 Sum_probs=182.5
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.|++||||++|+|||||+.+++.|++++..+ ..++++||+||+||||||+|+++|+.++
T Consensus 3 y~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~-------------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 3 YLVLARKYRPRSFSEMVGQEHVVQALTNALTQQ-------------------RLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcC-------------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 568999999999999999999999999999872 3468899999999999999999999998
Q ss_pred CcEEE------EeCCCCCCchhhhhhc----------ccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc
Q 003873 423 FQAIE------VNASDSRGKADAKISK----------GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA 486 (790)
Q Consensus 423 ~~iiE------inaSd~rsk~~~~i~~----------~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~ 486 (790)
|.--. ..++..+..+ ..+.. .......+.+++++....+... .++++|+||||+|.|+.
T Consensus 64 C~~~~~~~~~~~~pCg~C~~C-~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~----~g~~KV~IIDEvh~Ls~ 138 (618)
T PRK14951 64 CQGPDGQGGITATPCGVCQAC-RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPV----QGRFKVFMIDEVHMLTN 138 (618)
T ss_pred CCCcccccCCCCCCCCccHHH-HHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcc----cCCceEEEEEChhhCCH
Confidence 73110 0111111000 00100 0011224578888877654432 35678999999999998
Q ss_pred cchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc
Q 003873 487 GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN 566 (790)
Q Consensus 487 ~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~ 566 (790)
...+.|+..++. ....+.+|++|++ ...++.++++||..|.|.+++.+++..+|.+++.++|+.++++++..|+..++
T Consensus 139 ~a~NaLLKtLEE-PP~~~~fIL~Ttd-~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~ 216 (618)
T PRK14951 139 TAFNAMLKTLEE-PPEYLKFVLATTD-PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAAR 216 (618)
T ss_pred HHHHHHHHhccc-CCCCeEEEEEECC-chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 776666655552 1233456777766 44567889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 567 GDIRMAINQL-QYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 567 GDiR~aIn~L-q~~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
||+|.++++| |.++.+...|+.+.+++++....++ .+|..+..+..
T Consensus 217 GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~---~i~~LldaL~~ 263 (618)
T PRK14951 217 GSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRS---HVFRLIDALAQ 263 (618)
T ss_pred CCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHH---HHHHHHHHHHc
Confidence 9999999998 4555666789999999877554333 35666666553
No 18
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=4.1e-27 Score=277.20 Aligned_cols=227 Identities=19% Similarity=0.321 Sum_probs=170.7
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.|.+||||++|+|||||+.+++.|++++... ..++++||+||+||||||+|++||+.++
T Consensus 3 Y~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~-------------------rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQ-------------------RLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhC-------------------CCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 468999999999999999999999999998861 3467889999999999999999999998
Q ss_pred CcEE-EEeCCCCCCchhhhhhcc-------cCC---CchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhH
Q 003873 423 FQAI-EVNASDSRGKADAKISKG-------IGG---SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG 491 (790)
Q Consensus 423 ~~ii-EinaSd~rsk~~~~i~~~-------~g~---s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~ 491 (790)
|... ...++..+..+ ..+..+ +.. ...+.+++++....+... .++++||||||+|.|+...++.
T Consensus 64 ce~~~~~~pCg~C~sC-~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~----~gk~KViIIDEAh~LT~eAqNA 138 (944)
T PRK14949 64 CEQGVTATPCGVCSSC-VEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPS----RGRFKVYLIDEVHMLSRSSFNA 138 (944)
T ss_pred CccCCCCCCCCCchHH-HHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhh----cCCcEEEEEechHhcCHHHHHH
Confidence 7521 00111111000 001100 011 224567777766544322 3567899999999998877777
Q ss_pred HHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHH
Q 003873 492 IADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571 (790)
Q Consensus 492 l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~ 571 (790)
|+.+|+. ....+.||++|++ ...++.+|++||..|+|.+++.+++..+|.++|..+++.++++++..|+..++||+|.
T Consensus 139 LLKtLEE-PP~~vrFILaTTe-~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ 216 (944)
T PRK14949 139 LLKTLEE-PPEHVKFLLATTD-PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRD 216 (944)
T ss_pred HHHHHhc-cCCCeEEEEECCC-chhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 6666653 1234556666665 4456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHhcCCCCCHHHHHHHH
Q 003873 572 AINQLQ-YMSLSLSVIKYDDIRQRL 595 (790)
Q Consensus 572 aIn~Lq-~~~~~~~~it~~~v~~~~ 595 (790)
++++|+ .++.....++.+.+.+++
T Consensus 217 ALnLLdQala~~~~~It~~~V~~ll 241 (944)
T PRK14949 217 ALSLTDQAIAFGGGQVMLTQVQTML 241 (944)
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHh
Confidence 999994 455556678887777655
No 19
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=2.5e-27 Score=268.85 Aligned_cols=230 Identities=22% Similarity=0.353 Sum_probs=183.6
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
+.|..||||++|+|||||+.+++.|++++.. +..++++||+||+|+||||+|+++|+.++|
T Consensus 1 ~~la~KyRP~~f~dliGQe~vv~~L~~a~~~-------------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 1 MNLALKYRPSSFKDLVGQDVLVRILRNAFTL-------------------NKIPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred CChhHHhCCCCHHHhcCcHHHHHHHHHHHHc-------------------CCCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 4689999999999999999999999888876 135689999999999999999999998754
Q ss_pred ------------------------cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEe
Q 003873 424 ------------------------QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMD 479 (790)
Q Consensus 424 ------------------------~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIID 479 (790)
+++|+|+++.++ .+.+++++..+.+.+. ...++|+|||
T Consensus 62 ~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~--------------vddIR~Iie~~~~~P~----~~~~KVvIID 123 (491)
T PRK14964 62 SNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTS--------------VDDIKVILENSCYLPI----SSKFKVYIID 123 (491)
T ss_pred cCCCCCCCccccHHHHHHhccCCCCEEEEecccCCC--------------HHHHHHHHHHHHhccc----cCCceEEEEe
Confidence 356666654332 3568888877654433 3567899999
Q ss_pred cCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 003873 480 EVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALE 559 (790)
Q Consensus 480 EiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~ 559 (790)
|+|.|+..+.++|...++.. ...+.+|++|++ ......++++||..+.|.+++..++..+|..++.+|++.++++++.
T Consensus 124 Eah~Ls~~A~NaLLK~LEeP-p~~v~fIlatte-~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~ 201 (491)
T PRK14964 124 EVHMLSNSAFNALLKTLEEP-APHVKFILATTE-VKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLK 201 (491)
T ss_pred ChHhCCHHHHHHHHHHHhCC-CCCeEEEEEeCC-hHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999887666666665531 233456666654 4456688999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 560 ELADRVNGDIRMAINQLQYMSL-SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 560 ~Ia~~s~GDiR~aIn~Lq~~~~-~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
.|++.++||+|.+++.|+.++. ....|+.+++.+++....++ .+|+.+..++.
T Consensus 202 lIa~~s~GslR~alslLdqli~y~~~~It~e~V~~llg~~~~~---~If~L~~aI~~ 255 (491)
T PRK14964 202 LIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCVDKH---ILEDLVEAILL 255 (491)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHccCCHH---HHHHHHHHHHC
Confidence 9999999999999999966554 45689999999877544433 26777777765
No 20
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=7.8e-27 Score=270.49 Aligned_cols=242 Identities=17% Similarity=0.241 Sum_probs=176.2
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
+.|++||||++|+||+||+.+++.|++|+.. +..++++||+||+||||||+|+++|+.++|
T Consensus 1 ~al~~kyRP~~f~eivGq~~i~~~L~~~i~~-------------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 1 MALYRKYRPATFAEVVGQEHVTEPLSSALDA-------------------GRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred CcHHHHhCCCcHHHhcCcHHHHHHHHHHHHc-------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3578999999999999999999999999987 135678999999999999999999999986
Q ss_pred cEEE-EeCCCCCC-----------chhhhhh-cccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchh
Q 003873 424 QAIE-VNASDSRG-----------KADAKIS-KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG 490 (790)
Q Consensus 424 ~iiE-inaSd~rs-----------k~~~~i~-~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~ 490 (790)
.--. ..++..+. ..+ .++ ........+.++++.....+... ...++|+||||+|.|+...++
T Consensus 62 ~~~~~~~pCg~C~~C~~i~~~~~~~~d-vieidaas~~gvd~iRel~~~~~~~P~----~~~~KVvIIDEah~Lt~~A~N 136 (584)
T PRK14952 62 AQGPTATPCGVCESCVALAPNGPGSID-VVELDAASHGGVDDTRELRDRAFYAPA----QSRYRIFIVDEAHMVTTAGFN 136 (584)
T ss_pred ccCCCCCcccccHHHHHhhcccCCCce-EEEeccccccCHHHHHHHHHHHHhhhh----cCCceEEEEECCCcCCHHHHH
Confidence 3100 00000000 000 000 00001135667777666544332 356789999999999987766
Q ss_pred HHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHH
Q 003873 491 GIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570 (790)
Q Consensus 491 ~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR 570 (790)
.|+..++.. ...+.+|++|++ ...++++|++||..|.|.+++.+++..+|..+|.++|+.++++++..|+..++||+|
T Consensus 137 ALLK~LEEp-p~~~~fIL~tte-~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 137 ALLKIVEEP-PEHLIFIFATTE-PEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred HHHHHHhcC-CCCeEEEEEeCC-hHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 666655531 234445556654 456678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCCCCHHHHHHHHHhccCCCCCChHHHHHHHh
Q 003873 571 MAINQLQYMSLS--LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614 (790)
Q Consensus 571 ~aIn~Lq~~~~~--~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~ 614 (790)
.++|+|+.++.. ...|+.+.+...+.... .-.+|+.+..+.
T Consensus 215 ~aln~Ldql~~~~~~~~It~~~v~~llg~~~---~~~i~~lv~al~ 257 (584)
T PRK14952 215 DTLSVLDQLLAGAADTHVTYQRALGLLGATD---VALIDDAVDALA 257 (584)
T ss_pred HHHHHHHHHHhccCCCCcCHHHHHHHHCCCC---HHHHHHHHHHHH
Confidence 999999876654 46799999887664322 223455555554
No 21
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.95 E-value=2.2e-26 Score=275.80 Aligned_cols=241 Identities=20% Similarity=0.292 Sum_probs=176.5
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
+.|.+||||++|+|||||+.+++.|+.+|.. +...+++||+||+||||||+|++||+.|+|
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~-------------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDS-------------------GRINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHh-------------------CCCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 4588999999999999999999999999987 134678999999999999999999999987
Q ss_pred cEEEEeCCCCCCchh--hhhhcc---------cCC---CchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccch
Q 003873 424 QAIEVNASDSRGKAD--AKISKG---------IGG---SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR 489 (790)
Q Consensus 424 ~iiEinaSd~rsk~~--~~i~~~---------~g~---s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~ 489 (790)
.-- ....-++.+. ..+... +.. ...+.++++.....+.. ....++||||||+|.|+...+
T Consensus 64 ~~~--~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p----~~~~~KV~IIDEad~lt~~a~ 137 (824)
T PRK07764 64 VEG--PTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAP----AESRYKIFIIDEAHMVTPQGF 137 (824)
T ss_pred ccC--CCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhch----hcCCceEEEEechhhcCHHHH
Confidence 421 0000111110 001000 111 23566777665544332 245678999999999998776
Q ss_pred hHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCH
Q 003873 490 GGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDI 569 (790)
Q Consensus 490 ~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDi 569 (790)
+.|+.+|+.. ...+.|||+|++ ...++.+|++||..|.|.+++.++|..+|.++|.++++.++++++..|+..++||+
T Consensus 138 NaLLK~LEEp-P~~~~fIl~tt~-~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdl 215 (824)
T PRK07764 138 NALLKIVEEP-PEHLKFIFATTE-PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSV 215 (824)
T ss_pred HHHHHHHhCC-CCCeEEEEEeCC-hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 7666666532 234455666654 45567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCCCCHHHHHHHHHhccCCCCCChHHHHHHHh
Q 003873 570 RMAINQLQYMSLS--LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614 (790)
Q Consensus 570 R~aIn~Lq~~~~~--~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~ 614 (790)
|.+++.|+.++.. ...|+.+++..++... ....+|+++..+.
T Consensus 216 R~Al~eLEKLia~~~~~~IT~e~V~allg~~---~~~~I~~lidAL~ 259 (824)
T PRK07764 216 RDSLSVLDQLLAGAGPEGVTYERAVALLGVT---DSALIDEAVDALA 259 (824)
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHhcCC---CHHHHHHHHHHHH
Confidence 9999999776643 4578999888765332 2223455555554
No 22
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=1.9e-26 Score=265.14 Aligned_cols=230 Identities=22% Similarity=0.351 Sum_probs=179.1
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.|++||||++|+||+||+.+++.|..++..+ ..++++||+||+|+||||+|+++|+.++
T Consensus 3 y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~-------------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQ-------------------KVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred chhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcC-------------------CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 568999999999999999999999999999872 2457899999999999999999999997
Q ss_pred Cc------------------------EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEE
Q 003873 423 FQ------------------------AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478 (790)
Q Consensus 423 ~~------------------------iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLII 478 (790)
|. ++++++... .....+++++........ .+.++||||
T Consensus 64 c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~--------------~gvd~ir~ii~~~~~~p~----~g~~kViII 125 (546)
T PRK14957 64 CKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASR--------------TGVEETKEILDNIQYMPS----QGRYKVYLI 125 (546)
T ss_pred CCCCCCCCCCcccHHHHHHhcCCCCceEEeecccc--------------cCHHHHHHHHHHHHhhhh----cCCcEEEEE
Confidence 62 233332211 123456677766543322 356789999
Q ss_pred ecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 003873 479 DEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIAL 558 (790)
Q Consensus 479 DEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l 558 (790)
||+|.|+...++.|+.+++. ....+.+|++|++ ...++.++++||..++|.+++.+++..+|.+++.++++.++++++
T Consensus 126 DEa~~ls~~a~naLLK~LEe-pp~~v~fIL~Ttd-~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al 203 (546)
T PRK14957 126 DEVHMLSKQSFNALLKTLEE-PPEYVKFILATTD-YHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSL 203 (546)
T ss_pred echhhccHHHHHHHHHHHhc-CCCCceEEEEECC-hhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999998777777766663 1234557777776 566777899999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHh
Q 003873 559 EELADRVNGDIRMAINQLQYMS-LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614 (790)
Q Consensus 559 ~~Ia~~s~GDiR~aIn~Lq~~~-~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~ 614 (790)
..|++.++||+|.++|+|+.++ .....|+.+++++++.....+ ..|+.+..+.
T Consensus 204 ~~Ia~~s~GdlR~alnlLek~i~~~~~~It~~~V~~~l~~~~~~---~v~~ll~Al~ 257 (546)
T PRK14957 204 EYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQMLGIIDSE---EVYSIINAII 257 (546)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHHccCCHH---HHHHHHHHHH
Confidence 9999999999999999997654 335779999998876543222 2455555443
No 23
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=2.9e-26 Score=254.86 Aligned_cols=244 Identities=24% Similarity=0.327 Sum_probs=176.3
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
-+.|++||||++|+||+||+..++.|++++.. +..++++||+||+|+||||+|+++|+.++
T Consensus 3 ~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~-------------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSL-------------------GRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred cHHHHHHhCCCchhhccChHHHHHHHHHHHHc-------------------CCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999999999988876 13467899999999999999999999997
Q ss_pred CcEEE-EeCCCCCCchhhhhhcc-------cC---CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhH
Q 003873 423 FQAIE-VNASDSRGKADAKISKG-------IG---GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG 491 (790)
Q Consensus 423 ~~iiE-inaSd~rsk~~~~i~~~-------~g---~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~ 491 (790)
+.... .++...+..+ ..+... +. ......+++++......+ ..+.++|+||||+|.|+....+.
T Consensus 64 c~~~~~~~pc~~c~~c-~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p----~~~~~kviIIDEa~~l~~~a~na 138 (363)
T PRK14961 64 CQNGITSNPCRKCIIC-KEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSP----SKSRFKVYLIDEVHMLSRHSFNA 138 (363)
T ss_pred CCCCCCCCCCCCCHHH-HHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCc----ccCCceEEEEEChhhcCHHHHHH
Confidence 63211 1111000000 000000 00 122455777766544322 13456899999999998766665
Q ss_pred HHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHH
Q 003873 492 IADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571 (790)
Q Consensus 492 l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~ 571 (790)
+...++.. ...+.+|++|++ ....++++++||..++|.+++.+++..+|..++.++++.++++++..|+..++||+|.
T Consensus 139 LLk~lEe~-~~~~~fIl~t~~-~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 139 LLKTLEEP-PQHIKFILATTD-VEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred HHHHHhcC-CCCeEEEEEcCC-hHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 55555431 234456677765 4456689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 572 AINQLQYM-SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 572 aIn~Lq~~-~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
+++.|+.+ +.+...++.+++.+.+.... .-.+|..+..+..
T Consensus 217 al~~l~~~~~~~~~~It~~~v~~~l~~~~---~~~i~~l~~ai~~ 258 (363)
T PRK14961 217 ALNLLEHAINLGKGNINIKNVTDMLGLLN---EKQSFLLTDALLK 258 (363)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCCC---HHHHHHHHHHHHc
Confidence 99999655 44557899998887664332 2245666666643
No 24
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.95 E-value=1.7e-26 Score=264.02 Aligned_cols=246 Identities=20% Similarity=0.302 Sum_probs=180.5
Q ss_pred CccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHH
Q 003873 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 341 ~~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.+.++|++||||++|+|++||+.+++.|+.++.. +..++++||+||+||||||+|+++|+.
T Consensus 6 ~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~-------------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 6 NQYIPFARKYRPSNFAELQGQEVLVKVLSYTILN-------------------DRLAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred ccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHc-------------------CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999999999887776 134689999999999999999999999
Q ss_pred hCCcEEE-----EeCCCCCCchhhhhhcc----------cCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCC
Q 003873 421 LGFQAIE-----VNASDSRGKADAKISKG----------IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS 485 (790)
Q Consensus 421 lg~~iiE-----inaSd~rsk~~~~i~~~----------~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~ 485 (790)
++|.... +.++..+..+ ..+... ......+.+++++..+...+. .+.++|+||||+|.|+
T Consensus 67 Lnc~~~~~~~~~~~~C~~C~~C-~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~----~~~~KVvIIDEa~~Ls 141 (507)
T PRK06645 67 VNCSALITENTTIKTCEQCTNC-ISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPL----QGKHKIFIIDEVHMLS 141 (507)
T ss_pred hcCccccccCcCcCCCCCChHH-HHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccc----cCCcEEEEEEChhhcC
Confidence 9874211 0111111000 001000 011235678888877654432 3567899999999998
Q ss_pred ccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 003873 486 AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV 565 (790)
Q Consensus 486 ~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s 565 (790)
....+.|...++. ....+.+|++|+ ....+.+++++||..+.|.+++.+++..+|..++.++++.++++++..|+..+
T Consensus 142 ~~a~naLLk~LEe-pp~~~vfI~aTt-e~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s 219 (507)
T PRK06645 142 KGAFNALLKTLEE-PPPHIIFIFATT-EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKS 219 (507)
T ss_pred HHHHHHHHHHHhh-cCCCEEEEEEeC-ChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 7665655555542 112333444554 34456688999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHh-cC---CCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 566 NGDIRMAINQLQYMSL-SL---SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 566 ~GDiR~aIn~Lq~~~~-~~---~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
+||+|.+++.|+.++. .. ..|+.++|.+++.....+ .+|+.+..++.
T Consensus 220 ~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~---~if~L~~ai~~ 270 (507)
T PRK06645 220 EGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSS---VIIEFVEYIIH 270 (507)
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHH---HHHHHHHHHHc
Confidence 9999999999977643 32 369999999877544443 46666666654
No 25
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=4.6e-26 Score=263.45 Aligned_cols=244 Identities=20% Similarity=0.330 Sum_probs=182.5
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.|++||||++|+||+||+.+++.|.+|+..+ ..++++||+||+|+||||+|+++|+.++
T Consensus 3 ~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~-------------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQQ-------------------RLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred cHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcC-------------------CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999999999999999872 2467899999999999999999999998
Q ss_pred CcEE-EEeCCCCCCchhhhhhc----------ccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhH
Q 003873 423 FQAI-EVNASDSRGKADAKISK----------GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG 491 (790)
Q Consensus 423 ~~ii-EinaSd~rsk~~~~i~~----------~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~ 491 (790)
|... ..+++..+..+ ..+.. .......+.+++++..+.+.+. .+.++|+||||+|.|+....+.
T Consensus 64 c~~~~~~~pcg~C~~C-~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~----~~~~kVvIIDEad~ls~~a~na 138 (527)
T PRK14969 64 CETGVTATPCGVCSAC-LEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPT----RGRFKVYIIDEVHMLSKSAFNA 138 (527)
T ss_pred CCCCCCCCCCCCCHHH-HHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcc----cCCceEEEEcCcccCCHHHHHH
Confidence 7421 11111111000 00000 0011235678888877654332 4567899999999999876666
Q ss_pred HHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHH
Q 003873 492 IADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571 (790)
Q Consensus 492 l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~ 571 (790)
+...++. ....+.+|++|++ ...++.++++||..++|.+++.+++..+|.+++.+||+.++++++..|+..++||+|.
T Consensus 139 LLK~LEe-pp~~~~fIL~t~d-~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 139 MLKTLEE-PPEHVKFILATTD-PQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRD 216 (527)
T ss_pred HHHHHhC-CCCCEEEEEEeCC-hhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 6666553 1245567777776 3456678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 572 AINQLQ-YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 572 aIn~Lq-~~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
++++|+ .++.+.+.|+.+++..++.....+ .+|+.+..+..
T Consensus 217 al~lldqai~~~~~~I~~~~v~~~~~~~~~~---~i~~ll~al~~ 258 (527)
T PRK14969 217 ALSLLDQAIAYGGGTVNESEVRAMLGAIDQD---YLFALLEALLA 258 (527)
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHCCCCHH---HHHHHHHHHHc
Confidence 999995 555567789999998876443222 35666666653
No 26
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=7.8e-26 Score=257.60 Aligned_cols=230 Identities=25% Similarity=0.371 Sum_probs=174.1
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
+.|.+||||++|+|++||+++++.|+.++.. +..++++||+|||||||||+|+++|+.+++
T Consensus 2 ~~l~~kyRP~~~~divGq~~i~~~L~~~i~~-------------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKK-------------------NSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred chhHHHHCCCCHHHccCcHHHHHHHHHHHHc-------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4699999999999999999999999888876 124578999999999999999999999976
Q ss_pred ------------------------cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEe
Q 003873 424 ------------------------QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMD 479 (790)
Q Consensus 424 ------------------------~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIID 479 (790)
+++++|++..++ .+.++++...+..... ...++|||||
T Consensus 63 ~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~g--------------id~iR~i~~~~~~~p~----~~~~kVvIID 124 (472)
T PRK14962 63 ENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRG--------------IDEIRKIRDAVGYRPM----EGKYKVYIID 124 (472)
T ss_pred ccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCC--------------HHHHHHHHHHHhhChh----cCCeEEEEEE
Confidence 466666654333 2345655554433221 3456899999
Q ss_pred cCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 003873 480 EVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALE 559 (790)
Q Consensus 480 EiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~ 559 (790)
|+|.|....++.+...++.. ...+.+|++|++ .....++|++||..+.|.+++.+++..+|..++..+++.+++++++
T Consensus 125 E~h~Lt~~a~~~LLk~LE~p-~~~vv~Ilattn-~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~ 202 (472)
T PRK14962 125 EVHMLTKEAFNALLKTLEEP-PSHVVFVLATTN-LEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALS 202 (472)
T ss_pred ChHHhHHHHHHHHHHHHHhC-CCcEEEEEEeCC-hHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999876555555444421 123344555553 3455688999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 560 ELADRVNGDIRMAINQLQYMSLS-LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 560 ~Ia~~s~GDiR~aIn~Lq~~~~~-~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
.|++.++||+|.++|.|+.++.. ...|+.+++.+.+..... -.+|..+..+..
T Consensus 203 ~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~---~~i~~li~si~~ 256 (472)
T PRK14962 203 FIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPI---EVVRDYINAIFN 256 (472)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCH---HHHHHHHHHHHc
Confidence 99999999999999999876543 346999999887643322 134555555543
No 27
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=7.1e-26 Score=261.66 Aligned_cols=230 Identities=19% Similarity=0.327 Sum_probs=173.9
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.|++||||++|+||+||+.+++.|.+++.. +...+++||+||+||||||+|++||+.++
T Consensus 3 ~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~-------------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 3 HASLTARYRPQTFAEVAGQETVKAILSRAAQE-------------------NRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred cchHHHHhCCCCHHHhcCCHHHHHHHHHHHHc-------------------CCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 56899999999999999999999999999886 12468999999999999999999999998
Q ss_pred Cc------------------------EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEE
Q 003873 423 FQ------------------------AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478 (790)
Q Consensus 423 ~~------------------------iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLII 478 (790)
|. +++++++..+ ..+.++.+.....+.. ....++||||
T Consensus 64 C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~--------------~Id~iR~L~~~~~~~p----~~g~~kVIII 125 (624)
T PRK14959 64 CETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNR--------------GIDDAKRLKEAIGYAP----MEGRYKVFII 125 (624)
T ss_pred ccCCCCCCCCcccHHHHHHhcCCCCceEEEeccccc--------------CHHHHHHHHHHHHhhh----hcCCceEEEE
Confidence 64 3334332211 1344555544433222 1345689999
Q ss_pred ecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 003873 479 DEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIAL 558 (790)
Q Consensus 479 DEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l 558 (790)
||+|.|....++.|...++. ....+.+|++|++ ....+.+|++||..|.|.+++.+++..+|..++..+++.++++++
T Consensus 126 DEad~Lt~~a~naLLk~LEE-P~~~~ifILaTt~-~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal 203 (624)
T PRK14959 126 DEAHMLTREAFNALLKTLEE-PPARVTFVLATTE-PHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAV 203 (624)
T ss_pred EChHhCCHHHHHHHHHHhhc-cCCCEEEEEecCC-hhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999987666666555553 1234445566664 445667899999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHH-HhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHh
Q 003873 559 EELADRVNGDIRMAINQLQYM-SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614 (790)
Q Consensus 559 ~~Ia~~s~GDiR~aIn~Lq~~-~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~ 614 (790)
+.|++.++||+|.++++|+.+ ..+...|+.++|...+.....+ ..|+.+..+.
T Consensus 204 ~lIA~~s~GdlR~Al~lLeqll~~g~~~It~d~V~~~lg~~~~e---~vfeLl~AL~ 257 (624)
T PRK14959 204 RLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGVLGLAGQE---LFLRLMEALA 257 (624)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCCCHH---HHHHHHHHHh
Confidence 999999999999999999644 4455689999888776433222 2455555543
No 28
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=4.3e-26 Score=260.89 Aligned_cols=214 Identities=24% Similarity=0.348 Sum_probs=173.7
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
+.|++||||++|+||+||+.+++.|+.++... ..++++|||||+|+|||++|+++|+.+.+
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~g-------------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNN-------------------RLAHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcC-------------------CCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999861 35678899999999999999999999853
Q ss_pred ------------------------cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEe
Q 003873 424 ------------------------QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMD 479 (790)
Q Consensus 424 ------------------------~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIID 479 (790)
+++++++++.++ .+.+++++....+.+. .+.++|+|||
T Consensus 63 ~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~g--------------Id~IRelie~~~~~P~----~~~~KVvIID 124 (535)
T PRK08451 63 EQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRG--------------IDDIRELIEQTKYKPS----MARFKIFIID 124 (535)
T ss_pred CCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccC--------------HHHHHHHHHHHhhCcc----cCCeEEEEEE
Confidence 244444443222 3567777765433222 3467899999
Q ss_pred cCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 003873 480 EVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALE 559 (790)
Q Consensus 480 EiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~ 559 (790)
|+|.|+...+++|+..++.. ...+.+|++|++. ..++++|++||..++|.+++.+++..+|..+|.++|+.++++++.
T Consensus 125 Ead~Lt~~A~NALLK~LEEp-p~~t~FIL~ttd~-~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~ 202 (535)
T PRK08451 125 EVHMLTKEAFNALLKTLEEP-PSYVKFILATTDP-LKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALE 202 (535)
T ss_pred CcccCCHHHHHHHHHHHhhc-CCceEEEEEECCh-hhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999988777777777643 3445678888774 666789999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHH
Q 003873 560 ELADRVNGDIRMAINQLQYMSL-SLSVIKYDDIRQRLL 596 (790)
Q Consensus 560 ~Ia~~s~GDiR~aIn~Lq~~~~-~~~~it~~~v~~~~~ 596 (790)
.|+..++||+|.+++.|+.++. ....|+.+.+...+.
T Consensus 203 ~Ia~~s~GdlR~alnlLdqai~~~~~~It~~~V~~~lg 240 (535)
T PRK08451 203 ILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLG 240 (535)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHhC
Confidence 9999999999999999965444 456788988877653
No 29
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=4.4e-26 Score=262.10 Aligned_cols=228 Identities=21% Similarity=0.359 Sum_probs=169.0
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.|++||||++|+||+||+.+++.|.+++... ..++++||+||+|+||||+|+++|+.+.
T Consensus 3 ~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~-------------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNN-------------------KLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-------------------CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999999999988761 3468999999999999999999999997
Q ss_pred CcEE-EEeCCCCCCchhhhhh----------cccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhH
Q 003873 423 FQAI-EVNASDSRGKADAKIS----------KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG 491 (790)
Q Consensus 423 ~~ii-EinaSd~rsk~~~~i~----------~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~ 491 (790)
|.-. ...++..+..+ ..+. ........+.+++++......+. ...++|+||||+|.|+..+++.
T Consensus 64 C~~~~~~~~Cg~C~sC-r~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~----~~~~KVIIIDEad~Lt~~A~Na 138 (605)
T PRK05896 64 CLNPKDGDCCNSCSVC-ESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPT----TFKYKVYIIDEAHMLSTSAWNA 138 (605)
T ss_pred CCCCCCCCCCcccHHH-HHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchh----hCCcEEEEEechHhCCHHHHHH
Confidence 5321 11111111000 0000 00011234567777766554332 3457899999999998776666
Q ss_pred HHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHH
Q 003873 492 IADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571 (790)
Q Consensus 492 l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~ 571 (790)
|..+++. .+...+++++++.....++++++||..+.|.+++..++..+|..++.++++.++++++..|+..++||+|.
T Consensus 139 LLKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~ 216 (605)
T PRK05896 139 LLKTLEE--PPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRD 216 (605)
T ss_pred HHHHHHh--CCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHH
Confidence 6666652 23333333333445666689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCCCHHHHHHHHH
Q 003873 572 AINQLQYMSLS-LSVIKYDDIRQRLL 596 (790)
Q Consensus 572 aIn~Lq~~~~~-~~~it~~~v~~~~~ 596 (790)
+++.|+.++.. ...|+.+++.+.+.
T Consensus 217 AlnlLekL~~y~~~~It~e~V~ellg 242 (605)
T PRK05896 217 GLSILDQLSTFKNSEIDIEDINKTFG 242 (605)
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHhc
Confidence 99999886654 33488888887643
No 30
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=1.6e-25 Score=261.70 Aligned_cols=245 Identities=20% Similarity=0.359 Sum_probs=182.2
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.|++||||++|+||+||+++++.|.+++.. +..++++|||||+|+||||+|+++|+.++
T Consensus 3 y~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~-------------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 3 YLVLARKYRPQTFSDLTGQEHVSRTLQNAIDT-------------------GRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHc-------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 46799999999999999999999999999987 13468899999999999999999999997
Q ss_pred CcEE-EEeCCCCCCchh--------hhhh-cccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHH
Q 003873 423 FQAI-EVNASDSRGKAD--------AKIS-KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGI 492 (790)
Q Consensus 423 ~~ii-EinaSd~rsk~~--------~~i~-~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l 492 (790)
|.-- ...++..+..+. ..++ ........+.+++++....+... ...++|+||||+|.|+....+.|
T Consensus 64 c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~----~~~~KVvIIdev~~Lt~~a~naL 139 (576)
T PRK14965 64 CEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPS----RSRYKIFIIDEVHMLSTNAFNAL 139 (576)
T ss_pred CCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccc----cCCceEEEEEChhhCCHHHHHHH
Confidence 6410 011111100000 0000 00111234567887776654432 35678999999999998777777
Q ss_pred HHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHH
Q 003873 493 ADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMA 572 (790)
Q Consensus 493 ~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~a 572 (790)
+.+++. ....+.+|++|++ ...++.+|++||..|.|.+++..++..+|..++.++|+.++++++..|+..++||+|.+
T Consensus 140 Lk~LEe-pp~~~~fIl~t~~-~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~a 217 (576)
T PRK14965 140 LKTLEE-PPPHVKFIFATTE-PHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDS 217 (576)
T ss_pred HHHHHc-CCCCeEEEEEeCC-hhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHH
Confidence 766663 1235566777765 45666899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 573 INQLQYM-SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 573 In~Lq~~-~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
++.|+.+ +..+..|+.+++...+.....+ .+|+.+..++.
T Consensus 218 l~~Ldqliay~g~~It~edV~~llG~~~~~---~l~~ll~al~~ 258 (576)
T PRK14965 218 LSTLDQVLAFCGDAVGDDDVAELLGVVDRR---LLLDISAAVFG 258 (576)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHhCCCCHH---HHHHHHHHHHc
Confidence 9999654 4445679999998876443333 26666666654
No 31
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.94 E-value=2e-25 Score=243.10 Aligned_cols=233 Identities=28% Similarity=0.445 Sum_probs=179.3
Q ss_pred ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.+.+|++||||++++|++|++.+++.|..|+.. ...+++||+||||+|||++++++++++
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~--------------------~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKE--------------------KNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHHHHhC--------------------CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999976 123468999999999999999999987
Q ss_pred C-----CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHH
Q 003873 422 G-----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLI 496 (790)
Q Consensus 422 g-----~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll 496 (790)
. ..++++++++..+.. .+ ...+.++.... +. ....+.||||||+|.+....+..+..++
T Consensus 63 ~~~~~~~~~i~~~~~~~~~~~--~~--------~~~i~~~~~~~---~~---~~~~~~vviiDe~~~l~~~~~~~L~~~l 126 (319)
T PRK00440 63 YGEDWRENFLELNASDERGID--VI--------RNKIKEFARTA---PV---GGAPFKIIFLDEADNLTSDAQQALRRTM 126 (319)
T ss_pred cCCccccceEEeccccccchH--HH--------HHHHHHHHhcC---CC---CCCCceEEEEeCcccCCHHHHHHHHHHH
Confidence 3 346777776543321 00 01222222211 11 1134679999999999876666666666
Q ss_pred HHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 003873 497 ASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576 (790)
Q Consensus 497 ~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~L 576 (790)
+.. ...+.+|++||.. ...++++.+||..+.|.+++.+++..+|..++.++++.+++++++.|+..++||+|.+++.|
T Consensus 127 e~~-~~~~~lIl~~~~~-~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 127 EMY-SQNTRFILSCNYS-SKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred hcC-CCCCeEEEEeCCc-cccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 643 3346677777753 44568899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 577 QYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 577 q~~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
+.++..+..||.+++...+... .....|..+..++.
T Consensus 205 ~~~~~~~~~it~~~v~~~~~~~---~~~~i~~l~~~~~~ 240 (319)
T PRK00440 205 QAAAATGKEVTEEAVYKITGTA---RPEEIREMIELALN 240 (319)
T ss_pred HHHHHcCCCCCHHHHHHHhCCC---CHHHHHHHHHHHHc
Confidence 9988887789999998765332 22356777777764
No 32
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.4e-26 Score=261.75 Aligned_cols=234 Identities=24% Similarity=0.388 Sum_probs=179.4
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.++.||||++|+|++||+.++..|++.|.. +...+++||+||.||||||+||.+|+.++
T Consensus 3 yq~L~rKyRP~~F~evvGQe~v~~~L~nal~~-------------------~ri~hAYlfsG~RGvGKTt~Ari~AkalN 63 (515)
T COG2812 3 YQVLARKYRPKTFDDVVGQEHVVKTLSNALEN-------------------GRIAHAYLFSGPRGVGKTTIARILAKALN 63 (515)
T ss_pred hHHHHHHhCcccHHHhcccHHHHHHHHHHHHh-------------------CcchhhhhhcCCCCcCchhHHHHHHHHhc
Confidence 35688999999999999999999999999998 24679999999999999999999999998
Q ss_pred CcE-EEEeCCCCCCchhhhhhcc----------cCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhH
Q 003873 423 FQA-IEVNASDSRGKADAKISKG----------IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG 491 (790)
Q Consensus 423 ~~i-iEinaSd~rsk~~~~i~~~----------~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~ 491 (790)
|.- ....++..+..+ ..|..+ ......+.+++++++..+.+. ..+++|+||||+|+|+....++
T Consensus 64 C~~~~~~ePC~~C~~C-k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~----~~ryKVyiIDEvHMLS~~afNA 138 (515)
T COG2812 64 CENGPTAEPCGKCISC-KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPS----EGRYKVYIIDEVHMLSKQAFNA 138 (515)
T ss_pred CCCCCCCCcchhhhhh-HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCc----cccceEEEEecHHhhhHHHHHH
Confidence 863 111111111000 011111 122346789999888766543 6778999999999998876665
Q ss_pred HHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHH
Q 003873 492 IADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571 (790)
Q Consensus 492 l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~ 571 (790)
|+..++. ....+-+|+.|+ .......++++||+.+.|++++.++|...|..|+.+|++.++++++..|++.++|.+|.
T Consensus 139 LLKTLEE-PP~hV~FIlATT-e~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RD 216 (515)
T COG2812 139 LLKTLEE-PPSHVKFILATT-EPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRD 216 (515)
T ss_pred Hhccccc-CccCeEEEEecC-CcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhh
Confidence 5555542 122233333444 35556689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHhcCCCCCHHHHHHHHHhccCCC
Q 003873 572 AINQL-QYMSLSLSVIKYDDIRQRLLSSAKDE 602 (790)
Q Consensus 572 aIn~L-q~~~~~~~~it~~~v~~~~~~~~kd~ 602 (790)
++++| |++..+.+.|+.+.+..++.....+.
T Consensus 217 alslLDq~i~~~~~~It~~~v~~~lG~~~~~~ 248 (515)
T COG2812 217 ALSLLDQAIAFGEGEITLESVRDMLGLTDIEK 248 (515)
T ss_pred HHHHHHHHHHccCCcccHHHHHHHhCCCCHHH
Confidence 99999 66666677899999988776544443
No 33
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.94 E-value=5.7e-25 Score=241.42 Aligned_cols=246 Identities=23% Similarity=0.329 Sum_probs=180.9
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.++|++||+|++|++|+|++.+++.|..|+.. +..+++||+|||||||||+|+++++++.
T Consensus 2 ~~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~--------------------~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 2 APLWTEKYRPALLEDILGQDEVVERLSRAVDS--------------------PNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CCchHHhhCCCcHHHhcCCHHHHHHHHHHHhC--------------------CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 46999999999999999999999999998876 1234799999999999999999999984
Q ss_pred C-----cEEEEeCCCCCCchhhhhhc------ccC------CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCC
Q 003873 423 F-----QAIEVNASDSRGKADAKISK------GIG------GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS 485 (790)
Q Consensus 423 ~-----~iiEinaSd~rsk~~~~i~~------~~g------~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~ 485 (790)
. .++++|+++........+.. .++ ......+++++........ ......+|||||+|.|.
T Consensus 62 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vlilDe~~~l~ 138 (337)
T PRK12402 62 GDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRP---LSADYKTILLDNAEALR 138 (337)
T ss_pred CcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCC---CCCCCcEEEEeCcccCC
Confidence 3 46788887642111000100 000 0112334444333221111 12345699999999998
Q ss_pred ccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 003873 486 AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV 565 (790)
Q Consensus 486 ~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s 565 (790)
...++.+..+++... ..+.+|++++. ....+++|.+||..+.|.+++.+++..+|..+|.++++.+++++++.|+..+
T Consensus 139 ~~~~~~L~~~le~~~-~~~~~Il~~~~-~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~ 216 (337)
T PRK12402 139 EDAQQALRRIMEQYS-RTCRFIIATRQ-PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA 216 (337)
T ss_pred HHHHHHHHHHHHhcc-CCCeEEEEeCC-hhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 766677777666432 23456666654 3455688999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 566 NGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 566 ~GDiR~aIn~Lq~~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
+||+|.+++.|+.++.....|+.+++.+.+..... ..++|+.+..+..
T Consensus 217 ~gdlr~l~~~l~~~~~~~~~It~~~v~~~~~~~~~--~~~i~~l~~ai~~ 264 (337)
T PRK12402 217 GGDLRKAILTLQTAALAAGEITMEAAYEALGDVGT--DEVIESLLDAAEA 264 (337)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCC--HHHHHHHHHHHHc
Confidence 99999999999998876778999999886543221 2356777777754
No 34
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.94 E-value=5.9e-25 Score=236.51 Aligned_cols=210 Identities=24% Similarity=0.350 Sum_probs=166.8
Q ss_pred chhhhhcCCCCCccccCCHHHHH---HHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHH
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVK---QLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~---~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
+++.++.||++++|+|||++.+. -|...++. +...+++|||||||||||+|++||+.
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~--------------------~~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEA--------------------GHLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhc--------------------CCCceeEEECCCCCCHHHHHHHHHHh
Confidence 59999999999999999999873 44555554 45689999999999999999999999
Q ss_pred hCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh
Q 003873 421 LGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK 500 (790)
Q Consensus 421 lg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~ 500 (790)
.++.|..+|+... ...++++++..+..... .+++.||||||||+++...|.+++-.++
T Consensus 72 ~~~~f~~~sAv~~---------------gvkdlr~i~e~a~~~~~----~gr~tiLflDEIHRfnK~QQD~lLp~vE--- 129 (436)
T COG2256 72 TNAAFEALSAVTS---------------GVKDLREIIEEARKNRL----LGRRTILFLDEIHRFNKAQQDALLPHVE--- 129 (436)
T ss_pred hCCceEEeccccc---------------cHHHHHHHHHHHHHHHh----cCCceEEEEehhhhcChhhhhhhhhhhc---
Confidence 9999999998753 13468888887743322 3567899999999999988887776665
Q ss_pred cCCCcEEEEe--c-ccchhhhhhccccccccccCCCCHHHHHHHHHHHHHH--cCCC-----CCHHHHHHHHHHccCCHH
Q 003873 501 ISKIPIICIC--N-DRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA--EGLE-----VNEIALEELADRVNGDIR 570 (790)
Q Consensus 501 ~s~~pII~I~--n-d~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~--Egi~-----i~~~~l~~Ia~~s~GDiR 570 (790)
+..||+|+ + +.+....+.|++||.++.|.+++.++|.++|.+.+.. .++. +++++++.|+..++||.|
T Consensus 130 --~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 130 --NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred --CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 34445543 3 3345556899999999999999999999999995543 3444 789999999999999999
Q ss_pred HHHHHHHHHHhcCC---CCCHHHHHHHHHh
Q 003873 571 MAINQLQYMSLSLS---VIKYDDIRQRLLS 597 (790)
Q Consensus 571 ~aIn~Lq~~~~~~~---~it~~~v~~~~~~ 597 (790)
.++|.|+++..... .++.+.+++.+..
T Consensus 208 ~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~ 237 (436)
T COG2256 208 RALNLLELAALSAEPDEVLILELLEEILQR 237 (436)
T ss_pred HHHHHHHHHHHhcCCCcccCHHHHHHHHhh
Confidence 99999999877632 2346777666543
No 35
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=1.7e-25 Score=260.64 Aligned_cols=244 Identities=20% Similarity=0.346 Sum_probs=184.5
Q ss_pred ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..+.|.+||||++|+||+||+.+++.|.+++.. +..++++||+||+|+||||+|+++|+.+
T Consensus 10 ~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~-------------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 10 PYRVLARKYRPQTFDDLIGQEAMVRTLTNAFET-------------------GRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred cchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHc-------------------CCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999999999999999999999986 1357899999999999999999999999
Q ss_pred CCcEEEEe------CCCCCCchhhhhhcc----------cCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCC
Q 003873 422 GFQAIEVN------ASDSRGKADAKISKG----------IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS 485 (790)
Q Consensus 422 g~~iiEin------aSd~rsk~~~~i~~~----------~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~ 485 (790)
+|.....+ ++..+.. ...+... -.....+.|++++..+.+... ...++||||||+|.|+
T Consensus 71 ~c~~~~~~~~~~~~~cg~c~~-C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~----~a~~KVvIIDEad~Ls 145 (598)
T PRK09111 71 NYEGPDGDGGPTIDLCGVGEH-CQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPV----SARYKVYIIDEVHMLS 145 (598)
T ss_pred CcCCccccCCCccccCcccHH-HHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchh----cCCcEEEEEEChHhCC
Confidence 87643322 1111111 1111111 011235678888877654432 3567899999999999
Q ss_pred ccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 003873 486 AGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV 565 (790)
Q Consensus 486 ~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s 565 (790)
....+.|+..++.. ...+.||++|++ ...++.++++||..|.|.+++.+++..+|.++|.++++.+++++++.|+..+
T Consensus 146 ~~a~naLLKtLEeP-p~~~~fIl~tte-~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a 223 (598)
T PRK09111 146 TAAFNALLKTLEEP-PPHVKFIFATTE-IRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAA 223 (598)
T ss_pred HHHHHHHHHHHHhC-CCCeEEEEEeCC-hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 87666666666531 234556677754 4557789999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHH-HHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHh
Q 003873 566 NGDIRMAINQLQY-MSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614 (790)
Q Consensus 566 ~GDiR~aIn~Lq~-~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~ 614 (790)
+||+|.+++.|+. ++.+.+.|+.++|..++....++. .|+.+..++
T Consensus 224 ~Gdlr~al~~Ldkli~~g~g~It~e~V~~llg~~~~~~---if~L~~ai~ 270 (598)
T PRK09111 224 EGSVRDGLSLLDQAIAHGAGEVTAEAVRDMLGLADRAR---VIDLFEALM 270 (598)
T ss_pred CCCHHHHHHHHHHHHhhcCCCcCHHHHHHHhCCCCHHH---HHHHHHHHH
Confidence 9999999999954 444556899999998775544443 444444443
No 36
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=2.1e-25 Score=255.92 Aligned_cols=226 Identities=22% Similarity=0.310 Sum_probs=172.2
Q ss_pred hhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc-
Q 003873 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ- 424 (790)
Q Consensus 346 W~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~- 424 (790)
+.+||||++|+||+||+.+++.|+.|+..+ ..++++||+|||||||||+|+++|+.+.+.
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~-------------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQG-------------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcC-------------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 349999999999999999999999999872 245778999999999999999999998652
Q ss_pred ----------------------EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCC
Q 003873 425 ----------------------AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVD 482 (790)
Q Consensus 425 ----------------------iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD 482 (790)
++++|+++.+ ....++++......... ...++||||||+|
T Consensus 65 ~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~--------------~vd~iR~l~~~~~~~p~----~~~~kVVIIDEad 126 (504)
T PRK14963 65 EDPKPCGECESCLAVRRGAHPDVLEIDAASNN--------------SVEDVRDLREKVLLAPL----RGGRKVYILDEAH 126 (504)
T ss_pred CCCCCCCcChhhHHHhcCCCCceEEecccccC--------------CHHHHHHHHHHHhhccc----cCCCeEEEEECcc
Confidence 4444443221 23456665554433221 3456899999999
Q ss_pred CCCccchhHHHHHHHHhhcC--CCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003873 483 GMSAGDRGGIADLIASIKIS--KIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEE 560 (790)
Q Consensus 483 ~L~~~~~~~l~~Ll~~i~~s--~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~ 560 (790)
.|+....+. |+..++.. .+.+|++|+. .....+.+.+||..++|.+++.+++..+|.++|.++|+.++++++..
T Consensus 127 ~ls~~a~na---LLk~LEep~~~t~~Il~t~~-~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ 202 (504)
T PRK14963 127 MMSKSAFNA---LLKTLEEPPEHVIFILATTE-PEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQL 202 (504)
T ss_pred ccCHHHHHH---HHHHHHhCCCCEEEEEEcCC-hhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 997654444 44444443 2334445543 34556789999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 561 LADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 561 Ia~~s~GDiR~aIn~Lq~~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
|++.++||+|.++|.||.++.....|+.+++.+.+.... .-.+|+.+..++.
T Consensus 203 ia~~s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~---~~~if~Li~al~~ 254 (504)
T PRK14963 203 VARLADGAMRDAESLLERLLALGTPVTRKQVEEALGLPP---QERLRGIAAALAQ 254 (504)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCc---HHHHHHHHHHHHc
Confidence 999999999999999999877767899999987654332 2245666666653
No 37
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.93 E-value=3.3e-25 Score=257.98 Aligned_cols=216 Identities=23% Similarity=0.385 Sum_probs=168.3
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.|++||||++|+||+||+.+++.|++|+.. +..++++||+||+|||||++|+.+|+.++
T Consensus 3 y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~-------------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 3 YQALYRKWRPQTFEDVVGQEHITKTLKNAIKQ-------------------GKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred cHHHHHHhCCCcHHhccCcHHHHHHHHHHHHc-------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35799999999999999999999999999987 13468899999999999999999999987
Q ss_pred Cc------------------------EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEE
Q 003873 423 FQ------------------------AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478 (790)
Q Consensus 423 ~~------------------------iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLII 478 (790)
|. +++++++.. ...+.+++++..+.+.+. ...++|+||
T Consensus 64 c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~--------------~~vd~ir~i~~~v~~~p~----~~~~kViII 125 (559)
T PRK05563 64 CLNPPDGEPCNECEICKAITNGSLMDVIEIDAASN--------------NGVDEIRDIRDKVKYAPS----EAKYKVYII 125 (559)
T ss_pred CCCCCCCCCCCccHHHHHHhcCCCCCeEEeecccc--------------CCHHHHHHHHHHHhhCcc----cCCeEEEEE
Confidence 53 233333211 224567777777654332 456789999
Q ss_pred ecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 003873 479 DEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIAL 558 (790)
Q Consensus 479 DEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l 558 (790)
||+|.|+....+.|...++.. ...+.+|++|+ ....+++++++||..+.|.+++..++..+|..++.++|+.++++++
T Consensus 126 DE~~~Lt~~a~naLLKtLEep-p~~~ifIlatt-~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al 203 (559)
T PRK05563 126 DEVHMLSTGAFNALLKTLEEP-PAHVIFILATT-EPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEAL 203 (559)
T ss_pred ECcccCCHHHHHHHHHHhcCC-CCCeEEEEEeC-ChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 999999876656555544421 12233444444 3455668899999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHH-HhcCCCCCHHHHHHHHHh
Q 003873 559 EELADRVNGDIRMAINQLQYM-SLSLSVIKYDDIRQRLLS 597 (790)
Q Consensus 559 ~~Ia~~s~GDiR~aIn~Lq~~-~~~~~~it~~~v~~~~~~ 597 (790)
..|+..++||+|.+++.|+.. +.+...|+.+++.+.+..
T Consensus 204 ~~ia~~s~G~~R~al~~Ldq~~~~~~~~It~~~V~~vlg~ 243 (559)
T PRK05563 204 RLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEVTGS 243 (559)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCC
Confidence 999999999999999999654 444667899888776543
No 38
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=4.5e-25 Score=248.06 Aligned_cols=244 Identities=22% Similarity=0.324 Sum_probs=174.6
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.+++||||++|+||+||+.+++.|+.++.. +..++++||+||+||||||+|+++|+.+.
T Consensus 3 ~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~-------------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 3 YQVIARKYRPKKFADITAQEHITRTIQNSLRM-------------------GRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred cHHHHHhcCCCcHhhccChHHHHHHHHHHHHh-------------------CCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45689999999999999999999999999986 13567899999999999999999999998
Q ss_pred CcEEEEeC------CCCCCch--hhhhhcc-------c---CCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCC
Q 003873 423 FQAIEVNA------SDSRGKA--DAKISKG-------I---GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGM 484 (790)
Q Consensus 423 ~~iiEina------Sd~rsk~--~~~i~~~-------~---g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L 484 (790)
|.-..-++ ...++.+ ...+..+ + .....+.++++.......+. ...++||||||+|.|
T Consensus 64 c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~----~~~~kvvIIdea~~l 139 (397)
T PRK14955 64 CQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQ----KGRYRVYIIDEVHML 139 (397)
T ss_pred CCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchh----cCCeEEEEEeChhhC
Confidence 74211000 1111111 0011100 0 11224667777666543332 356689999999999
Q ss_pred CccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003873 485 SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR 564 (790)
Q Consensus 485 ~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~ 564 (790)
+....+.+...++.. .....+|+++++ ....+++|++||..+.|.+++.+++..+|..++..+++.+++++++.|++.
T Consensus 140 ~~~~~~~LLk~LEep-~~~t~~Il~t~~-~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~ 217 (397)
T PRK14955 140 SIAAFNAFLKTLEEP-PPHAIFIFATTE-LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRK 217 (397)
T ss_pred CHHHHHHHHHHHhcC-CCCeEEEEEeCC-hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 876655555554421 123345555544 456668999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHhc------CCCCCHHHHHHHHHhccCCCCCChHHHHHHHh
Q 003873 565 VNGDIRMAINQLQYMSLS------LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614 (790)
Q Consensus 565 s~GDiR~aIn~Lq~~~~~------~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~ 614 (790)
++||+|.+++.|+.++.. ...|+.+++.+.+..... -+.|..+..+.
T Consensus 218 s~g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v~~~~~---~~vf~l~~ai~ 270 (397)
T PRK14955 218 AQGSMRDAQSILDQVIAFSVESEGEGSIRYDKVAELLNYIDD---EHFFAVTDAVA 270 (397)
T ss_pred cCCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHCCCCH---HHHHHHHHHHH
Confidence 999999999999865432 357888888776543222 23565555554
No 39
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=7e-25 Score=255.83 Aligned_cols=242 Identities=21% Similarity=0.307 Sum_probs=174.8
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
+...+||||++|+||+||+.+++.|++++.. +..++++||+||+||||||+|+++|+.++|
T Consensus 4 ~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~-------------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 4 QVIARKYRPSKFADITAQEHITHTIQNSLRM-------------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHc-------------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999999998876 135688999999999999999999999988
Q ss_pred cEEEEe------CCCCCCch--hhhhhc--------ccC--CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCC
Q 003873 424 QAIEVN------ASDSRGKA--DAKISK--------GIG--GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS 485 (790)
Q Consensus 424 ~iiEin------aSd~rsk~--~~~i~~--------~~g--~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~ 485 (790)
....-+ ..+.++.+ ...+.. .-+ ....+.|++++....+.+. ...++|+||||+|.|+
T Consensus 65 ~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~----~~~~KVvIIdEad~Lt 140 (620)
T PRK14954 65 QRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQ----KGRYRVYIIDEVHMLS 140 (620)
T ss_pred CCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhh----cCCCEEEEEeChhhcC
Confidence 421000 00111111 001110 011 1225677777766654332 3567899999999998
Q ss_pred ccchhHHHHHHHHhhcCC-CcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003873 486 AGDRGGIADLIASIKISK-IPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR 564 (790)
Q Consensus 486 ~~~~~~l~~Ll~~i~~s~-~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~ 564 (790)
....+.|...++. .+. ..+|++++ ....++++|++||..+.|.+++.+++..+|..++..+|+.+++++++.|++.
T Consensus 141 ~~a~naLLK~LEe--Pp~~tv~IL~t~-~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~ 217 (620)
T PRK14954 141 TAAFNAFLKTLEE--PPPHAIFIFATT-ELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARK 217 (620)
T ss_pred HHHHHHHHHHHhC--CCCCeEEEEEeC-ChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7665655555542 222 33445554 3566668999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHhc------CCCCCHHHHHHHHHhccCCCCCChHHHHHHHh
Q 003873 565 VNGDIRMAINQLQYMSLS------LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614 (790)
Q Consensus 565 s~GDiR~aIn~Lq~~~~~------~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~ 614 (790)
++||+|.+++.|+.++.. ...|+.+++.+.+.....+ +.|+.+..+.
T Consensus 218 s~Gdlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv~~~~e~---~iF~L~dai~ 270 (620)
T PRK14954 218 AQGSMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELLNYIDDE---QFFDVTDAIA 270 (620)
T ss_pred hCCCHHHHHHHHHHHHHhccccccCCccCHHHHHHHHcCCCHH---HHHHHHHHHH
Confidence 999999999999865443 4578888887765433222 3455555543
No 40
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=6.2e-25 Score=251.29 Aligned_cols=244 Identities=23% Similarity=0.339 Sum_probs=174.6
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
..+|++||||++|+|++||+.+++.|++++.. +..++++|||||+|+||||+|+++|+.++
T Consensus 3 y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~-------------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 3 YIPFARKYRPKFFKEVIGQEIVVRILKNAVKL-------------------QRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred chHHHHhhCCCcHHHccChHHHHHHHHHHHHc-------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999999999999999987 12467899999999999999999999997
Q ss_pred CcE-EEEeCCCCCCchhhhhhc-----c--c---CCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhH
Q 003873 423 FQA-IEVNASDSRGKADAKISK-----G--I---GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG 491 (790)
Q Consensus 423 ~~i-iEinaSd~rsk~~~~i~~-----~--~---g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~ 491 (790)
|.- ...++...+.. ...+.. . + .....+.++.+...+...+. .+.++|+||||+|.|+....+.
T Consensus 64 c~~~~~~~pc~~c~n-c~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~----~~~~KVvIIDEad~Lt~~a~na 138 (486)
T PRK14953 64 CLNPQEGEPCGKCEN-CVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPI----KGKYKVYIIDEAHMLTKEAFNA 138 (486)
T ss_pred CcCCCCCCCCCccHH-HHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcc----cCCeeEEEEEChhhcCHHHHHH
Confidence 631 00011100000 000000 0 0 01123456666555443322 3567899999999998766555
Q ss_pred HHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHH
Q 003873 492 IADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571 (790)
Q Consensus 492 l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~ 571 (790)
+...++. .+...+++++++.....++++++||..+.|.+++.+++..+|..++..+|+.++++++..|++.++||+|.
T Consensus 139 LLk~LEe--pp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~ 216 (486)
T PRK14953 139 LLKTLEE--PPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRD 216 (486)
T ss_pred HHHHHhc--CCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 5555542 22233444444445566678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-cCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 572 AINQLQYMSL-SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 572 aIn~Lq~~~~-~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
+++.|+.++. ....++.+++.+.+.....+ .+|+.+..++.
T Consensus 217 al~~Ldkl~~~~~~~It~~~V~~~lg~~~~~---~vf~Li~ai~~ 258 (486)
T PRK14953 217 AASLLDQASTYGEGKVTIKVVEEFLGIVSQE---SVRKFLNLLLE 258 (486)
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHhCCCCHH---HHHHHHHHHHC
Confidence 9999976643 45678999998866443322 35666665553
No 41
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.93 E-value=2.4e-24 Score=234.94 Aligned_cols=282 Identities=23% Similarity=0.291 Sum_probs=192.3
Q ss_pred CCCccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHH
Q 003873 339 IQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVC 418 (790)
Q Consensus 339 ~~~~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lA 418 (790)
+.....+|++||||++|+|++||+.+++.|..|+.. +..++.+||+||||+|||++|+++|
T Consensus 4 ~~~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~lll~G~~G~GKT~la~~l~ 64 (316)
T PHA02544 4 VNPNEFMWEQKYRPSTIDECILPAADKETFKSIVKK-------------------GRIPNMLLHSPSPGTGKTTVAKALC 64 (316)
T ss_pred cCCCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhc-------------------CCCCeEEEeeCcCCCCHHHHHHHHH
Confidence 345678999999999999999999999999999975 1245677889999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCC-CccchhHHHHHHH
Q 003873 419 QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGM-SAGDRGGIADLIA 497 (790)
Q Consensus 419 kelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L-~~~~~~~l~~Ll~ 497 (790)
++++.+++++|+++.+ .+ .+. ..+.++...... ...++||||||+|.+ ....+..+..+++
T Consensus 65 ~~~~~~~~~i~~~~~~--~~-~i~--------~~l~~~~~~~~~-------~~~~~vliiDe~d~l~~~~~~~~L~~~le 126 (316)
T PHA02544 65 NEVGAEVLFVNGSDCR--ID-FVR--------NRLTRFASTVSL-------TGGGKVIIIDEFDRLGLADAQRHLRSFME 126 (316)
T ss_pred HHhCccceEeccCccc--HH-HHH--------HHHHHHHHhhcc-------cCCCeEEEEECcccccCHHHHHHHHHHHH
Confidence 9999999999998721 11 111 112232222110 134679999999999 4444555555555
Q ss_pred HhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHH-------HHHHHHHcCCCCCHHHHHHHHHHccCCHH
Q 003873 498 SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR-------LMQIANAEGLEVNEIALEELADRVNGDIR 570 (790)
Q Consensus 498 ~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~i-------L~~I~~~Egi~i~~~~l~~Ia~~s~GDiR 570 (790)
.. ...++||++||. ....+++|++||..+.|..|+.+++..+ +..++..+++.++++++..|++.+.||+|
T Consensus 127 ~~-~~~~~~Ilt~n~-~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r 204 (316)
T PHA02544 127 AY-SKNCSFIITANN-KNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFR 204 (316)
T ss_pred hc-CCCceEEEEcCC-hhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHH
Confidence 42 356788888875 3556789999999999999998876643 44567778999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhccCCCcccHHHHHhhcCCCcchHHHHHHHHhhhhcC
Q 003873 571 MAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRP 650 (790)
Q Consensus 571 ~aIn~Lq~~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~~~~~~~~~~e~id~~~~d~~~~~l~i~ENYl~~~~ 650 (790)
.+++.|+.++.. ..++.+++.... ....++.+..+-..+ ...+......+..+++.+-..+.++.....
T Consensus 205 ~~l~~l~~~~~~-~~i~~~~l~~~~-------~~~~~~l~~~l~~~d--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 273 (316)
T PHA02544 205 RTINELQRYAST-GKIDAGILSEVT-------NSDIDDVVEALKAKD--FKAVRALAPNYANDYASFVGKLYDELYPQV- 273 (316)
T ss_pred HHHHHHHHHHcc-CCCCHHHHHHhh-------HHHHHHHHHHHHcCC--HHHHHHHHHHhccCHHHHHHHHHHHHHHhC-
Confidence 999999988754 567776655422 112344444432221 111222334444455444444444443321
Q ss_pred CCCCCchHHhHHHHHHHHHhcChhhHhhh
Q 003873 651 SSAGRDEVKRLSLIARAAESISDGDIFNV 679 (790)
Q Consensus 651 ~~~~~~~~~~l~~~~~aad~lS~aD~v~~ 679 (790)
. ...+..+.+.++.+|....
T Consensus 274 ~---------~~~~~~~~~~l~~~~~~~~ 293 (316)
T PHA02544 274 T---------PPSIIRLIEIIGENNQYHG 293 (316)
T ss_pred C---------HHHHHHHHHHHHHHHHHHH
Confidence 1 3345667777777775443
No 42
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.93 E-value=5.9e-25 Score=257.30 Aligned_cols=244 Identities=20% Similarity=0.292 Sum_probs=175.6
Q ss_pred ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....|++||||++|+||+||+.+++.|+.++.. +..++++||+||+|+|||++|+++|+.+
T Consensus 4 ~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~-------------------~rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 4 KYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKS-------------------NKISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred chhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-------------------CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 356899999999999999999999999999987 1356889999999999999999999999
Q ss_pred CCcEEEEeCCCCCCchhh-------hhh-cccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHH
Q 003873 422 GFQAIEVNASDSRGKADA-------KIS-KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIA 493 (790)
Q Consensus 422 g~~iiEinaSd~rsk~~~-------~i~-~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~ 493 (790)
.|.-... ....++.+.. .++ ...+......+++++..+...+. .+.++|+||||+|.|+..+.+.|+
T Consensus 65 nC~~~~~-~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~----~g~~KV~IIDEa~~LT~~A~NALL 139 (725)
T PRK07133 65 NCSHKTD-LLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPT----QSKYKIYIIDEVHMLSKSAFNALL 139 (725)
T ss_pred cccccCC-CCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchh----cCCCEEEEEEChhhCCHHHHHHHH
Confidence 8742100 0001111100 000 00011235567887776654332 456789999999999876656555
Q ss_pred HHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHH
Q 003873 494 DLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAI 573 (790)
Q Consensus 494 ~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aI 573 (790)
..++.. ...+.+|++|+ ....++++|++||..+.|.+++.+++..+|..++.++|+.++++++..|+..++||+|.|+
T Consensus 140 KtLEEP-P~~tifILaTt-e~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~Al 217 (725)
T PRK07133 140 KTLEEP-PKHVIFILATT-EVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDAL 217 (725)
T ss_pred HHhhcC-CCceEEEEEcC-ChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 555421 12233444554 3455668999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-cCCCCCHHHHHHHHHhccCCCCCChHHHHHHHh
Q 003873 574 NQLQYMSL-SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614 (790)
Q Consensus 574 n~Lq~~~~-~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~ 614 (790)
++|+.++. +...|+.+.+.+.+.....+ .+|..+..++
T Consensus 218 slLekl~~y~~~~It~e~V~ellg~~~~e---~If~Ll~aI~ 256 (725)
T PRK07133 218 SIAEQVSIFGNNKITLKNVEELFGLVSNE---NLINLLNLLY 256 (725)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHcCCCHH---HHHHHHHHHH
Confidence 99976543 34568888887765443322 2444444443
No 43
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=3.2e-24 Score=251.51 Aligned_cols=228 Identities=21% Similarity=0.361 Sum_probs=173.8
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
..+|.+||||++|++|+||+.+++.|+.|+... ...+++||+||+|+||||+|+++|+.++
T Consensus 3 ~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~-------------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 3 YEPLHHKYRPQRFDELVGQEAIATTLKNALISN-------------------RIAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred cchHHHHhCCCcHhhccChHHHHHHHHHHHHcC-------------------CCCceEEEECCCCCChHHHHHHHHHHhc
Confidence 458999999999999999999999999999871 2457999999999999999999999998
Q ss_pred CcEEEEeCCCCCCchh--hhhhc----------ccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchh
Q 003873 423 FQAIEVNASDSRGKAD--AKISK----------GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG 490 (790)
Q Consensus 423 ~~iiEinaSd~rsk~~--~~i~~----------~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~ 490 (790)
|..........++.+. ..+.. .......+.+++++..+..... ...++||||||+|.|+....+
T Consensus 64 c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~----~~~~KViIIDEad~Lt~~a~n 139 (620)
T PRK14948 64 CLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPV----QARWKVYVIDECHMLSTAAFN 139 (620)
T ss_pred CCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChh----cCCceEEEEECccccCHHHHH
Confidence 7532110001111110 01110 0112335678888876654332 345689999999999887666
Q ss_pred HHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHH
Q 003873 491 GIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570 (790)
Q Consensus 491 ~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR 570 (790)
.|+..++. ....+.+|++|++ ...++++|++||..+.|.+++.+++..+|..++.++++.++++++..|++.++||+|
T Consensus 140 aLLK~LEe-Pp~~tvfIL~t~~-~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr 217 (620)
T PRK14948 140 ALLKTLEE-PPPRVVFVLATTD-PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLR 217 (620)
T ss_pred HHHHHHhc-CCcCeEEEEEeCC-hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHH
Confidence 66666652 1233446666765 445779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHH
Q 003873 571 MAINQLQYMSLSLSVIKYDDIRQRL 595 (790)
Q Consensus 571 ~aIn~Lq~~~~~~~~it~~~v~~~~ 595 (790)
.++++|+.+++....|+.+.+.+.+
T Consensus 218 ~A~~lLeklsL~~~~It~e~V~~lv 242 (620)
T PRK14948 218 DAESLLDQLSLLPGPITPEAVWDLL 242 (620)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHh
Confidence 9999999887776778888877654
No 44
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=3.4e-24 Score=251.33 Aligned_cols=244 Identities=20% Similarity=0.324 Sum_probs=178.3
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
...|++||||.+|+||+||+..++.|..|+.. +..++++|||||+|+||||+|+++|+.++
T Consensus 4 ~~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~-------------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 4 YIVSARKYRPSTFESVVGQEALTTTLKNAIAT-------------------NKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHc-------------------CCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999999999999986 13568899999999999999999999997
Q ss_pred CcEEE--EeCCCCCCchhhhhh----------cccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchh
Q 003873 423 FQAIE--VNASDSRGKADAKIS----------KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG 490 (790)
Q Consensus 423 ~~iiE--inaSd~rsk~~~~i~----------~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~ 490 (790)
|.... ..++..+..+ ..+. ...+....+.+++++..+...+. ...++|+||||+|.|+..+++
T Consensus 65 c~~~~~~~~~Cg~C~sC-~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~----~~~~KVvIIdea~~Ls~~a~n 139 (614)
T PRK14971 65 CQNLTADGEACNECESC-VAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQ----IGKYKIYIIDEVHMLSQAAFN 139 (614)
T ss_pred CCCCCCCCCCCCcchHH-HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcc----cCCcEEEEEECcccCCHHHHH
Confidence 64211 0011100000 0000 00011124567777766544332 346789999999999887777
Q ss_pred HHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHH
Q 003873 491 GIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570 (790)
Q Consensus 491 ~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR 570 (790)
.|..+++... ....+|++++. ...++++|++||..+.|.+++.+++..+|..++.++|+.+++++++.|++.++||+|
T Consensus 140 aLLK~LEepp-~~tifIL~tt~-~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 140 AFLKTLEEPP-SYAIFILATTE-KHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMR 217 (614)
T ss_pred HHHHHHhCCC-CCeEEEEEeCC-chhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 7776666321 22335555553 567779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 571 MAINQLQYMS-LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 571 ~aIn~Lq~~~-~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
.+++.|+..+ ..+..|+.+.+.+.+.. ...-..|+.+..++.
T Consensus 218 ~al~~Lekl~~y~~~~It~~~V~~~l~~---~~~~~iF~L~dai~~ 260 (614)
T PRK14971 218 DALSIFDQVVSFTGGNITYKSVIENLNI---LDYDYYFRLTDALLA 260 (614)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHHhCC---CCHHHHHHHHHHHHc
Confidence 9999997654 34445888877665532 222345777766654
No 45
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.92 E-value=2.1e-24 Score=245.52 Aligned_cols=243 Identities=21% Similarity=0.301 Sum_probs=173.6
Q ss_pred ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
+.+.|++||||++|+||+||+.+++.|+.|+.. +..++++||+||+|+|||++|+++|+.+
T Consensus 3 ~~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~-------------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAVLKNALRF-------------------NRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred chHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-------------------CCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999999999986 1346889999999999999999999998
Q ss_pred CCcEEEEeCCCCCCch--hhh--------hhcccC--CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccch
Q 003873 422 GFQAIEVNASDSRGKA--DAK--------ISKGIG--GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR 489 (790)
Q Consensus 422 g~~iiEinaSd~rsk~--~~~--------i~~~~g--~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~ 489 (790)
.+....-+.. .++.+ ... +...-+ ....+.++++.....+.. ....++||||||+|.|+....
T Consensus 64 ~c~~~~~~~~-~c~~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~----~~~~~kvvIIdead~lt~~~~ 138 (451)
T PRK06305 64 NCQNPTEDQE-PCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTP----SKSRYKIYIIDEVHMLTKEAF 138 (451)
T ss_pred cCCCcccCCC-CCcccHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhh----hcCCCEEEEEecHHhhCHHHH
Confidence 6531110000 00000 000 000001 111345665554433221 135678999999999987666
Q ss_pred hHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCH
Q 003873 490 GGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDI 569 (790)
Q Consensus 490 ~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDi 569 (790)
+.|..+++.. ...+.+|++|+. ...++++|++||..+.|.+++.+++..+|..++.++|+.+++++++.|+..++||+
T Consensus 139 n~LLk~lEep-~~~~~~Il~t~~-~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdl 216 (451)
T PRK06305 139 NSLLKTLEEP-PQHVKFFLATTE-IHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSL 216 (451)
T ss_pred HHHHHHhhcC-CCCceEEEEeCC-hHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 6665555531 234456666654 45667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCCCCHHHHHHHHHhccCCCCCChHHHHHHH
Q 003873 570 RMAINQLQYMSLS-LSVIKYDDIRQRLLSSAKDEDISPFTAVDKL 613 (790)
Q Consensus 570 R~aIn~Lq~~~~~-~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki 613 (790)
|.+++.|+..+.. ...|+.+++.+.+.....+ ..|+.+..+
T Consensus 217 r~a~~~Lekl~~~~~~~It~~~V~~l~~~~~~~---~vf~L~~ai 258 (451)
T PRK06305 217 RDAESLYDYVVGLFPKSLDPDSVAKALGLLSQD---SLYTLDEAI 258 (451)
T ss_pred HHHHHHHHHHHHhccCCcCHHHHHHHHCCCCHH---HHHHHHHHH
Confidence 9999999876643 4558888887765433222 345555444
No 46
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=1.1e-23 Score=247.21 Aligned_cols=244 Identities=20% Similarity=0.302 Sum_probs=176.5
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.|.+||||++|+||+||+.+++.|+.|+..+ ...+++||+||+|+||||+|+++|+.++
T Consensus 3 ~~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~-------------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 3 VQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEG-------------------RVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred cHHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhC-------------------CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356899999999999999999999999999872 2457899999999999999999999997
Q ss_pred CcEEE--EeCCCCCCchhhhhhcc-------c---CCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchh
Q 003873 423 FQAIE--VNASDSRGKADAKISKG-------I---GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG 490 (790)
Q Consensus 423 ~~iiE--inaSd~rsk~~~~i~~~-------~---g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~ 490 (790)
|.... ..++..+..+ ..+... + .....+.+++++........ ...++||||||+|.|.....+
T Consensus 64 c~~~~~~~~~c~~c~~c-~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~----~~~~kVvIIDEa~~L~~~a~n 138 (585)
T PRK14950 64 CTTNDPKGRPCGTCEMC-RAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPA----LARYKVYIIDEVHMLSTAAFN 138 (585)
T ss_pred CCCCCCCCCCCccCHHH-HHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcc----cCCeEEEEEeChHhCCHHHHH
Confidence 53311 0111000000 011000 0 11224566776655443322 345789999999999876666
Q ss_pred HHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHH
Q 003873 491 GIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570 (790)
Q Consensus 491 ~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR 570 (790)
.|...++.. ...+.||+++++ ...++++|++||..+.|.+++..++..+|..++.++++.++++++..|+..++||+|
T Consensus 139 aLLk~LEep-p~~tv~Il~t~~-~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr 216 (585)
T PRK14950 139 ALLKTLEEP-PPHAIFILATTE-VHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMR 216 (585)
T ss_pred HHHHHHhcC-CCCeEEEEEeCC-hhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 555555431 123345555543 556778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-cCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 571 MAINQLQYMSL-SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 571 ~aIn~Lq~~~~-~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
.+++.|+.++. ....|+.+++...+..... ..+|+.+..++.
T Consensus 217 ~al~~LekL~~y~~~~It~e~V~~ll~~s~~---~~vf~Lidal~~ 259 (585)
T PRK14950 217 DAENLLQQLATTYGGEISLSQVQSLLGISGD---EEVKALAEALLA 259 (585)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhcCCCH---HHHHHHHHHHHc
Confidence 99999987665 3567999998876644332 345666666653
No 47
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=1.4e-23 Score=233.98 Aligned_cols=230 Identities=19% Similarity=0.330 Sum_probs=172.6
Q ss_pred ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..+.|.+||||.+|+||+||+..++.|.++++. +..++++|||||||+|||++|+++|+.+
T Consensus 3 ~~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~-------------------~~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 3 NFVVSARKYRPQTFDDVVGQSHITNTLLNAIEN-------------------NHLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred chHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHc-------------------CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999999999999986 1246799999999999999999999998
Q ss_pred CCc------------EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccch
Q 003873 422 GFQ------------AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR 489 (790)
Q Consensus 422 g~~------------iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~ 489 (790)
++. ++++++... .....+.+++..+...+. ...++||||||+|.|.....
T Consensus 64 ~~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~i~~l~~~~~~~p~----~~~~kiviIDE~~~l~~~~~ 125 (367)
T PRK14970 64 NQPGYDDPNEDFSFNIFELDAASN--------------NSVDDIRNLIDQVRIPPQ----TGKYKIYIIDEVHMLSSAAF 125 (367)
T ss_pred cCCCCCCCCCCCCcceEEeccccC--------------CCHHHHHHHHHHHhhccc----cCCcEEEEEeChhhcCHHHH
Confidence 652 233332211 113456666665433221 34567999999999986544
Q ss_pred hHHHHHHHHhhcC-C-CcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Q 003873 490 GGIADLIASIKIS-K-IPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567 (790)
Q Consensus 490 ~~l~~Ll~~i~~s-~-~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G 567 (790)
+.+. ..++.. . ..+|++|+ .....++++.+||..+.|.+++.+++..+|..++.++|+.+++++++.|+..++|
T Consensus 126 ~~ll---~~le~~~~~~~~Il~~~-~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 126 NAFL---KTLEEPPAHAIFILATT-EKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred HHHH---HHHhCCCCceEEEEEeC-CcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 4444 444332 2 23444554 3456678999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc-CCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 568 DIRMAINQLQYMSLS-LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 568 DiR~aIn~Lq~~~~~-~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
|+|.+++.|+.++.. ...|+.+++...+.... .-++|+.+..++.
T Consensus 202 dlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~---~~~if~l~~ai~~ 247 (367)
T PRK14970 202 ALRDALSIFDRVVTFCGKNITRQAVTENLNILD---YDTYINVTDLILE 247 (367)
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCC---HHHHHHHHHHHHc
Confidence 999999999987753 33488888887654322 2246666666653
No 48
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.91 E-value=1.2e-23 Score=244.11 Aligned_cols=243 Identities=19% Similarity=0.241 Sum_probs=172.1
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
..-|+.||||++|+||+||+.+++.|+.|+.. +..++++|||||+|+||||+|+++|+.++
T Consensus 3 y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~-------------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 3 YRGTATKRRPRDFNSLEGQDFVVETLKHSIES-------------------NKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHc-------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 35689999999999999999999999999987 13467899999999999999999999997
Q ss_pred CcEEE-EeCCCCCCchhhhhhcc-------cC-C--CchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhH
Q 003873 423 FQAIE-VNASDSRGKADAKISKG-------IG-G--SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG 491 (790)
Q Consensus 423 ~~iiE-inaSd~rsk~~~~i~~~-------~g-~--s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~ 491 (790)
+.--. ..+...+..+ ..+... +. . ...+.++++.......+. ...++|+||||+|.|+..+.+.
T Consensus 64 c~~~~~~~pC~~C~~C-~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~----~~~~KVvIIDEa~~Ls~~a~na 138 (563)
T PRK06647 64 CVNGPTPMPCGECSSC-KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPA----SSRYRVYIIDEVHMLSNSAFNA 138 (563)
T ss_pred cccCCCCCCCccchHH-HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchh----cCCCEEEEEEChhhcCHHHHHH
Confidence 64100 0011000000 000000 11 1 224567666655443332 3567899999999998766555
Q ss_pred HHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHH
Q 003873 492 IADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571 (790)
Q Consensus 492 l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~ 571 (790)
|...++. ....+.+|+++++ ....+++|++||..+.|.+++.+++..+|..++..+++.++++++..|++.++||+|.
T Consensus 139 LLK~LEe-pp~~~vfI~~tte-~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~ 216 (563)
T PRK06647 139 LLKTIEE-PPPYIVFIFATTE-VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRD 216 (563)
T ss_pred HHHhhcc-CCCCEEEEEecCC-hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 5544442 1122334444543 4555689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHh
Q 003873 572 AINQLQYM-SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 614 (790)
Q Consensus 572 aIn~Lq~~-~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~ 614 (790)
+++.|+.+ +.....++.+++.+.+..... ..+|..+..++
T Consensus 217 alslLdklis~~~~~It~e~V~~llg~~~~---~~if~LidaI~ 257 (563)
T PRK06647 217 AYTLFDQVVSFSDSDITLEQIRSKMGLTGD---EFLEKLASSIL 257 (563)
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHhCCCCH---HHHHHHHHHHH
Confidence 99999654 444567999888876533211 23445444443
No 49
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.91 E-value=2.4e-23 Score=230.51 Aligned_cols=230 Identities=23% Similarity=0.409 Sum_probs=173.7
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
++|++||+|.++++++||+..++.|..|+.. +..++++||+||||+|||++|+.+++.+.+
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~-------------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKN-------------------GRIAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHc-------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999976 124578999999999999999999999865
Q ss_pred c------------------------EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEe
Q 003873 424 Q------------------------AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMD 479 (790)
Q Consensus 424 ~------------------------iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIID 479 (790)
. ++++++.+ ......+++++..+...+. ...++|||||
T Consensus 63 ~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~p~----~~~~~vviid 124 (355)
T TIGR02397 63 QNGPDGEPCNECESCKEINSGSSLDVIEIDAAS--------------NNGVDDIREILDNVKYAPS----SGKYKVYIID 124 (355)
T ss_pred CCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc--------------cCCHHHHHHHHHHHhcCcc----cCCceEEEEe
Confidence 4 22222221 1123456677766543221 3456799999
Q ss_pred cCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 003873 480 EVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALE 559 (790)
Q Consensus 480 EiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~ 559 (790)
|+|.|.....+.+...++.. ...+.+|+++++ ....++++++||..+.|.+++.+++..+|..++.++|+.++++++.
T Consensus 125 ea~~l~~~~~~~Ll~~le~~-~~~~~lIl~~~~-~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~ 202 (355)
T TIGR02397 125 EVHMLSKSAFNALLKTLEEP-PEHVVFILATTE-PHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALE 202 (355)
T ss_pred ChhhcCHHHHHHHHHHHhCC-ccceeEEEEeCC-HHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999875555555444321 223445556654 4455688999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 560 ELADRVNGDIRMAINQLQYMSL-SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 560 ~Ia~~s~GDiR~aIn~Lq~~~~-~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
.|++.++||+|.+++.|+..+. ..+.|+.+++++.+.... ..+.|+.+..++.
T Consensus 203 ~l~~~~~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~~~~---~~~i~~l~~ai~~ 256 (355)
T TIGR02397 203 LIARAADGSLRDALSLLDQLISFGNGNITYEDVNELLGLVD---DEKLIELLEAILN 256 (355)
T ss_pred HHHHHcCCChHHHHHHHHHHHhhcCCCCCHHHHHHHhCCCC---HHHHHHHHHHHHc
Confidence 9999999999999999976654 345689999987654332 2346666666653
No 50
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.91 E-value=7.8e-23 Score=209.81 Aligned_cols=209 Identities=22% Similarity=0.421 Sum_probs=169.8
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-C
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML-G 422 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel-g 422 (790)
++|++||+|+++..+.+|++....|+..... ....++|+|||+|.||-|.+.++.+++ |
T Consensus 1 ~LWvdkyrpksl~~l~~~~e~~~~Lksl~~~--------------------~d~PHll~yGPSGaGKKTrimclL~elYG 60 (351)
T KOG2035|consen 1 MLWVDKYRPKSLDELIYHEELANLLKSLSST--------------------GDFPHLLVYGPSGAGKKTRIMCLLRELYG 60 (351)
T ss_pred CcchhhcCcchhhhcccHHHHHHHHHHhccc--------------------CCCCeEEEECCCCCCchhhHHHHHHHHhC
Confidence 4899999999999999999998888766653 246899999999999999999999888 3
Q ss_pred C----------------------------cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccc-cCCCCCc
Q 003873 423 F----------------------------QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANM-DRSKHPK 473 (790)
Q Consensus 423 ~----------------------------~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~-~~~~~~~ 473 (790)
. ..+|+++||.-.. ..--+.+++......... ...+...
T Consensus 61 ~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~------------DRvViQellKevAQt~qie~~~qr~f 128 (351)
T KOG2035|consen 61 VGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNY------------DRVVIQELLKEVAQTQQIETQGQRPF 128 (351)
T ss_pred CCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcc------------cHHHHHHHHHHHHhhcchhhccccce
Confidence 1 1255666654222 122345555543322111 1224567
Q ss_pred eEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCC
Q 003873 474 TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEV 553 (790)
Q Consensus 474 ~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i 553 (790)
+|++|-|+|.|+.++|.++...++. +...+.+|++||. .+.+++++++||..++.+.|+.+++..+|..+|.+|++.+
T Consensus 129 Kvvvi~ead~LT~dAQ~aLRRTMEk-Ys~~~RlIl~cns-~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l 206 (351)
T KOG2035|consen 129 KVVVINEADELTRDAQHALRRTMEK-YSSNCRLILVCNS-TSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL 206 (351)
T ss_pred EEEEEechHhhhHHHHHHHHHHHHH-HhcCceEEEEecC-cccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC
Confidence 8999999999999999999988885 4567889999986 6778899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 003873 554 NEIALEELADRVNGDIRMAINQLQYMSLSLSVI 586 (790)
Q Consensus 554 ~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~i 586 (790)
+.+.+..|++.|+||+|.||-+|+..+..+...
T Consensus 207 p~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~ 239 (351)
T KOG2035|consen 207 PKELLKRIAEKSNRNLRRALLMLEAVRVNNEPF 239 (351)
T ss_pred cHHHHHHHHHHhcccHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999998875443
No 51
>PF08519 RFC1: Replication factor RFC1 C terminal domain; InterPro: IPR013725 This is the C-terminal domain of replication factor C, RFC1. RFC complexes hydrolyse ATP and load sliding clamps such as PCNA (proliferating cell nuclear antigen) onto double-stranded DNA. RFC1 is essential for RFC function in vivo [, ]. ; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_A.
Probab=99.91 E-value=1.3e-25 Score=218.91 Aligned_cols=110 Identities=39% Similarity=0.675 Sum_probs=59.9
Q ss_pred cChhhHhhhHhhcccccchhcccchhhcccchhhhccCcchhcccccccccccchhhhhchhhHHHHHHHHHHHhhcccc
Q 003873 671 ISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASR 750 (790)
Q Consensus 671 lS~aD~v~~~i~~~q~wsL~~~~~~~ssv~p~~~~~g~~~~~~~g~~~~~~Fp~wlgk~s~~~K~~r~l~el~~~~~~~~ 750 (790)
||+||+|++.||+.|+|+|||+|+++|||+|+.+++|+.. ..++.||+||||||+++|++|+++||+.||+.+.
T Consensus 1 IS~gDlv~~~Ir~~q~WsLlP~~a~~S~V~P~~~~~g~~~------~~~~~FP~wLGknS~~~K~~Rll~el~~h~~~~~ 74 (155)
T PF08519_consen 1 ISDGDLVDRQIRSTQQWSLLPTHAFFSCVLPASFMRGSMS------GERPNFPSWLGKNSKQNKNKRLLQELQSHMRLKT 74 (155)
T ss_dssp HHHHHHHHHHHTT-SSGGGHHHHHHHHTHHHHHTT-EE-S------S------SHHHHHHHHHHHHHHHHHHHTTTTT--
T ss_pred CcHHHHHHHHhhcCCchhhhHHHHHHHhhhhHHHhcCCCC------cccCCCcHHHHHHhHHHHHHHHHHHHHHHhcccc
Confidence 6899999999999999999999999999999999999732 1256799999999999999999999999998754
Q ss_pred ccccCchhhhhccHHHHHHHhchhhhcCCcchHHHhhhc
Q 003873 751 KSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDELLRKLLS 789 (790)
Q Consensus 751 ~~~~~~~~~~~~Ylp~L~~~l~~pL~~~~~~~~v~~vi~ 789 (790)
++++.+++++|+|+|+..|++||...++ |+|++||+
T Consensus 75 --s~~~~~v~~~Ylp~L~~~l~~pL~~~~~-~~v~~vi~ 110 (155)
T PF08519_consen 75 --SASKSEVRLDYLPLLRQKLTQPLIEQGK-DGVDEVID 110 (155)
T ss_dssp ---------------------------------------
T ss_pred --cCCHHHHHHHHHHHHHHHHHHHHHHcCc-ccHHHHHH
Confidence 8999999999999999999999999764 59999986
No 52
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.90 E-value=1.1e-22 Score=230.08 Aligned_cols=211 Identities=24% Similarity=0.383 Sum_probs=165.1
Q ss_pred hhhhhcCCCCCccccCCHHHHHH---HHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQ---LHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~---L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
+|++||||++++|++||++.+.. |..++.. ....++||+|||||||||+|+++|+.+
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~--------------------~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEA--------------------GRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHc--------------------CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999877 8888865 234689999999999999999999999
Q ss_pred CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhc
Q 003873 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKI 501 (790)
Q Consensus 422 g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~ 501 (790)
+..+++++++... ...+++++....... ......||||||+|.|....+..+..+++ .
T Consensus 61 ~~~~~~l~a~~~~---------------~~~ir~ii~~~~~~~----~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~ 118 (413)
T PRK13342 61 DAPFEALSAVTSG---------------VKDLREVIEEARQRR----SAGRRTILFIDEIHRFNKAQQDALLPHVE---D 118 (413)
T ss_pred CCCEEEEeccccc---------------HHHHHHHHHHHHHhh----hcCCceEEEEechhhhCHHHHHHHHHHhh---c
Confidence 9999999987531 123455554432211 12356799999999998876666655554 3
Q ss_pred CCCcEEEEeccc-chhhhhhccccccccccCCCCHHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHccCCHHHHHHHHH
Q 003873 502 SKIPIICICNDR-YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAE--GL-EVNEIALEELADRVNGDIRMAINQLQ 577 (790)
Q Consensus 502 s~~pII~I~nd~-~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~E--gi-~i~~~~l~~Ia~~s~GDiR~aIn~Lq 577 (790)
..+.+|++++.. .....++|++||..+.|.+++.+++..+|.+++... ++ .+++++++.|++.++||+|.++|+|+
T Consensus 119 ~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 119 GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 333344333332 334558899999999999999999999999988653 44 89999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHh
Q 003873 578 YMSLSLSVIKYDDIRQRLLS 597 (790)
Q Consensus 578 ~~~~~~~~it~~~v~~~~~~ 597 (790)
.++.....|+.+++.+.+..
T Consensus 199 ~~~~~~~~It~~~v~~~~~~ 218 (413)
T PRK13342 199 LAALGVDSITLELLEEALQK 218 (413)
T ss_pred HHHHccCCCCHHHHHHHHhh
Confidence 88766677899988876643
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.90 E-value=2.8e-23 Score=211.22 Aligned_cols=200 Identities=22% Similarity=0.322 Sum_probs=138.7
Q ss_pred CccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHH
Q 003873 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 341 ~~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
..+..+.+++||++|+|+|||++.+..++-+++.... .+....++|||||||+||||+|+.+|++
T Consensus 9 ~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~---------------r~~~l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 9 EEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKK---------------RGEALDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp ---S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHC---------------TTS---EEEEESSTTSSHHHHHHHHHHH
T ss_pred CcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHh---------------cCCCcceEEEECCCccchhHHHHHHHhc
Confidence 3467899999999999999999999999999887321 1134679999999999999999999999
Q ss_pred hCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh
Q 003873 421 LGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK 500 (790)
Q Consensus 421 lg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~ 500 (790)
++.++..+++...... .++..++.+ ...+.||||||||.|+...+..|+..++...
T Consensus 74 ~~~~~~~~sg~~i~k~--------------~dl~~il~~----------l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~ 129 (233)
T PF05496_consen 74 LGVNFKITSGPAIEKA--------------GDLAAILTN----------LKEGDILFIDEIHRLNKAQQEILLPAMEDGK 129 (233)
T ss_dssp CT--EEEEECCC--SC--------------HHHHHHHHT------------TT-EEEECTCCC--HHHHHHHHHHHHCSE
T ss_pred cCCCeEeccchhhhhH--------------HHHHHHHHh----------cCCCcEEEEechhhccHHHHHHHHHHhccCe
Confidence 9999998887643221 234444443 1345799999999999988888888887321
Q ss_pred c---------------CCCcEEEEecccchhh-hhhcccccccc-ccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003873 501 I---------------SKIPIICICNDRYSQK-LKSLVNYCSDL-RFRKPRKQEIAKRLMQIANAEGLEVNEIALEELAD 563 (790)
Q Consensus 501 ~---------------s~~pII~I~nd~~~~~-l~~L~sR~~~I-~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~ 563 (790)
- .-.|+-+|+.+..... ..+|++|+..+ ++..++.+++.+++.+.+...++.++++++.+|+.
T Consensus 130 idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~ 209 (233)
T PF05496_consen 130 IDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIAR 209 (233)
T ss_dssp EEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHH
T ss_pred EEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 0 0013444433323333 47899999875 79999999999999999999999999999999999
Q ss_pred HccCCHHHHHHHHHHH
Q 003873 564 RVNGDIRMAINQLQYM 579 (790)
Q Consensus 564 ~s~GDiR~aIn~Lq~~ 579 (790)
+|.|+.|-|+++|..+
T Consensus 210 rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 210 RSRGTPRIANRLLRRV 225 (233)
T ss_dssp CTTTSHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHH
Confidence 9999999999999875
No 54
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.88 E-value=2.6e-21 Score=229.85 Aligned_cols=213 Identities=22% Similarity=0.326 Sum_probs=157.8
Q ss_pred ccchhhhhcCCCCCccccCCHHHHH---HHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHH
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVK---QLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVC 418 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~---~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lA 418 (790)
...+|++||||++|+|++||+..+. .|+.++.. ....++||+|||||||||+|+++|
T Consensus 14 ~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~--------------------~~~~slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKA--------------------DRVGSLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred ccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc--------------------CCCceEEEECCCCCCHHHHHHHHH
Confidence 3458999999999999999999885 45566554 234689999999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHH
Q 003873 419 QMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIAS 498 (790)
Q Consensus 419 kelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~ 498 (790)
+.++..++++|++.. + ...+++.+..+..... ......||||||||.|+...+..+..+++
T Consensus 74 ~~~~~~f~~lna~~~-~--------------i~dir~~i~~a~~~l~---~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE- 134 (725)
T PRK13341 74 NHTRAHFSSLNAVLA-G--------------VKDLRAEVDRAKERLE---RHGKRTILFIDEVHRFNKAQQDALLPWVE- 134 (725)
T ss_pred HHhcCcceeehhhhh-h--------------hHHHHHHHHHHHHHhh---hcCCceEEEEeChhhCCHHHHHHHHHHhc-
Confidence 999999999988742 1 1123333333211100 01345799999999998866666555443
Q ss_pred hhcCCCcEEEEeccc-chhhhhhccccccccccCCCCHHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHccCCHH
Q 003873 499 IKISKIPIICICNDR-YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN-------AEGLEVNEIALEELADRVNGDIR 570 (790)
Q Consensus 499 i~~s~~pII~I~nd~-~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~-------~Egi~i~~~~l~~Ia~~s~GDiR 570 (790)
...+.+|+.++.. +....+++++||..+.|.+++.+++..+|.+++. .+++.+++++++.|++.+.||+|
T Consensus 135 --~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 135 --NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred --CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 3333333333332 2345588999999999999999999999999987 56788999999999999999999
Q ss_pred HHHHHHHHHHhcC-------CCCCHHHHHHHH
Q 003873 571 MAINQLQYMSLSL-------SVIKYDDIRQRL 595 (790)
Q Consensus 571 ~aIn~Lq~~~~~~-------~~it~~~v~~~~ 595 (790)
.++|.|+.++... ..++.+.+++.+
T Consensus 213 ~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l 244 (725)
T PRK13341 213 SLLNALELAVESTPPDEDGLIDITLAIAEESI 244 (725)
T ss_pred HHHHHHHHHHHhcccCCCCceeccHHHHHHHH
Confidence 9999999876431 126666666654
No 55
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.88 E-value=1.7e-21 Score=205.85 Aligned_cols=217 Identities=24% Similarity=0.386 Sum_probs=161.2
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML- 421 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel- 421 (790)
.+++.|+.||++++|+|||++.+.+ ...|.+.-+ ......++|+|||||||||+|++|++..
T Consensus 125 h~PLaermRPktL~dyvGQ~hlv~q-~gllrs~ie----------------q~~ipSmIlWGppG~GKTtlArlia~tsk 187 (554)
T KOG2028|consen 125 HKPLAERMRPKTLDDYVGQSHLVGQ-DGLLRSLIE----------------QNRIPSMILWGPPGTGKTTLARLIASTSK 187 (554)
T ss_pred cCChhhhcCcchHHHhcchhhhcCc-chHHHHHHH----------------cCCCCceEEecCCCCchHHHHHHHHhhcC
Confidence 4589999999999999999988765 333433111 1346789999999999999999999766
Q ss_pred --CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHh
Q 003873 422 --GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI 499 (790)
Q Consensus 422 --g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i 499 (790)
.|.+|++.+.... .+++++++..+...... ..++.|||||||++++..+|..++-.+
T Consensus 188 ~~SyrfvelSAt~a~---------------t~dvR~ife~aq~~~~l---~krkTilFiDEiHRFNksQQD~fLP~V--- 246 (554)
T KOG2028|consen 188 KHSYRFVELSATNAK---------------TNDVRDIFEQAQNEKSL---TKRKTILFIDEIHRFNKSQQDTFLPHV--- 246 (554)
T ss_pred CCceEEEEEeccccc---------------hHHHHHHHHHHHHHHhh---hcceeEEEeHHhhhhhhhhhhccccee---
Confidence 4668998877542 35677777776543322 456789999999999987766544433
Q ss_pred hcCCCcEEEEeccc-chhhhhhccccccccccCCCCHHHHHHHHHHHHH----HcC---------CCCCHHHHHHHHHHc
Q 003873 500 KISKIPIICICNDR-YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN----AEG---------LEVNEIALEELADRV 565 (790)
Q Consensus 500 ~~s~~pII~I~nd~-~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~----~Eg---------i~i~~~~l~~Ia~~s 565 (790)
+...+.+|..++++ ..+...+|++||.+|.+.+++.+.+..+|++... .+. +.+++.+++.|+..+
T Consensus 247 E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ls 326 (554)
T KOG2028|consen 247 ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLS 326 (554)
T ss_pred ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhc
Confidence 34444555544433 3445588999999999999999999999998433 111 247789999999999
Q ss_pred cCCHHHHHHHHHHH----HhcC-----CCCCHHHHHHHHHh
Q 003873 566 NGDIRMAINQLQYM----SLSL-----SVIKYDDIRQRLLS 597 (790)
Q Consensus 566 ~GDiR~aIn~Lq~~----~~~~-----~~it~~~v~~~~~~ 597 (790)
.||.|.++|+|++. |... ..++.+++++.+..
T Consensus 327 dGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 327 DGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred CchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 99999999999987 2222 36888999887643
No 56
>COG5275 BRCT domain type II [General function prediction only]
Probab=99.87 E-value=1.1e-21 Score=192.38 Aligned_cols=85 Identities=38% Similarity=0.659 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHH
Q 003873 196 EVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFD 275 (790)
Q Consensus 196 ~~~~~~~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~ 275 (790)
.+|+|.++||.|++|||||.|..++|++++.+|+.|||+|+.++|.+|+|||+|+++|++|++++++|+|+.|+|++|..
T Consensus 148 S~peg~~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidEegf~~ 227 (276)
T COG5275 148 SVPEGERECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGFDS 227 (276)
T ss_pred CCCCCCcccccccEEEEecccccccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHhCCccccHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 003873 276 MIRAS 280 (790)
Q Consensus 276 ~l~~~ 280 (790)
||...
T Consensus 228 LI~~~ 232 (276)
T COG5275 228 LIKDT 232 (276)
T ss_pred HHhcC
Confidence 99864
No 57
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.9e-20 Score=193.62 Aligned_cols=266 Identities=24% Similarity=0.331 Sum_probs=193.0
Q ss_pred hhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
..-...||++|+|+|||++++++|.-+++.-. ..+...-++||+||||.||||||+.+|+++|.+
T Consensus 15 ~~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk---------------~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 15 KIERSLRPKTLDEFIGQEKVKEQLQIFIKAAK---------------KRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred hhhcccCcccHHHhcChHHHHHHHHHHHHHHH---------------hcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 35557899999999999999999999999822 122456899999999999999999999999987
Q ss_pred EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh----
Q 003873 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK---- 500 (790)
Q Consensus 425 iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~---- 500 (790)
+-....... ++ ..++..++.+ ...+.||||||||.|+....+.+.-.++-..
T Consensus 80 ~k~tsGp~l--------eK------~gDlaaiLt~----------Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~ 135 (332)
T COG2255 80 LKITSGPAL--------EK------PGDLAAILTN----------LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDII 135 (332)
T ss_pred eEecccccc--------cC------hhhHHHHHhc----------CCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEE
Confidence 655443321 11 2345556655 3456799999999999877666666665321
Q ss_pred -----------cCCCcEEEEecccchhh-hhhccccccc-cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Q 003873 501 -----------ISKIPIICICNDRYSQK-LKSLVNYCSD-LRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567 (790)
Q Consensus 501 -----------~s~~pII~I~nd~~~~~-l~~L~sR~~~-I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G 567 (790)
-.-.|+-+|+.+...-. ..+|+.|+.. .++.-++.+++..++.+-+...++.++++...+|+.+|.|
T Consensus 136 IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG 215 (332)
T COG2255 136 IGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG 215 (332)
T ss_pred EccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC
Confidence 11235666655444434 4789988765 7788899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH-----hcCCCCCHHHHHHHHHhccCCCCCChHHHHH-HHh-----ccCCCcccHHHHHhhcCCCcch
Q 003873 568 DIRMAINQLQYMS-----LSLSVIKYDDIRQRLLSSAKDEDISPFTAVD-KLF-----GFNGGKLRMDERIDLSMSDPDL 636 (790)
Q Consensus 568 DiR~aIn~Lq~~~-----~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~-ki~-----~~~~~~~~~~e~id~~~~d~~~ 636 (790)
..|-|.++|.... .....|+.+-+.+++....-|.. -|+.++ ++| .+.++++.++.....--.|.+.
T Consensus 216 TPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L~Vd~~--GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~T 293 (332)
T COG2255 216 TPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKMLDVDEL--GLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDT 293 (332)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHhCcccc--cccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhH
Confidence 9999999996543 23567888877777766554432 223322 222 2556677666544333334443
Q ss_pred H-----HHHHHHHhhhhcCC
Q 003873 637 V-----PLLIQENYINYRPS 651 (790)
Q Consensus 637 ~-----~l~i~ENYl~~~~~ 651 (790)
+ |.+||++|++-.|.
T Consensus 294 iEdv~EPyLiq~gfi~RTpR 313 (332)
T COG2255 294 IEDVIEPYLIQQGFIQRTPR 313 (332)
T ss_pred HHHHHhHHHHHhchhhhCCC
Confidence 3 89999999988776
No 58
>PRK04132 replication factor C small subunit; Provisional
Probab=99.86 E-value=1e-20 Score=225.68 Aligned_cols=197 Identities=27% Similarity=0.332 Sum_probs=158.4
Q ss_pred cEEEEEC--CCCCChHHHHHHHHHHh-----CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCC
Q 003873 398 KAAILSG--SPGMGKTTAAKLVCQML-----GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSK 470 (790)
Q Consensus 398 ~~lLLsG--PpGtGKTTlA~~lAkel-----g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~ 470 (790)
-..++.| |+++||||+|++||+++ +.+++|+|||+.++. +.+++.+.......... .
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi--------------d~IR~iIk~~a~~~~~~--~ 628 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI--------------NVIREKVKEFARTKPIG--G 628 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH--------------HHHHHHHHHHHhcCCcC--C
Confidence 3456779 99999999999999998 568999999998764 34666655433221111 1
Q ss_pred CCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcC
Q 003873 471 HPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEG 550 (790)
Q Consensus 471 ~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Eg 550 (790)
.+++|+||||+|.|+..++++|+.+++. ....+++|++||+ ...++++|++||..++|.+++.+++..+|..+|.+|+
T Consensus 629 ~~~KVvIIDEaD~Lt~~AQnALLk~lEe-p~~~~~FILi~N~-~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg 706 (846)
T PRK04132 629 ASFKIIFLDEADALTQDAQQALRRTMEM-FSSNVRFILSCNY-SSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG 706 (846)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHhhC-CCCCeEEEEEeCC-hhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 2468999999999999888888888874 2467889999997 4677899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 551 LEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 551 i~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
+.++++++..|+..++||+|.+||+||.++.....|+.+.+..... ......+++.+..++.
T Consensus 707 i~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~~~~It~~~V~~~~~---~~~~~~I~~il~~~l~ 768 (846)
T PRK04132 707 LELTEEGLQAILYIAEGDMRRAINILQAAAALDDKITDENVFLVAS---RARPEDIREMMLLALK 768 (846)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHhC---CCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999887777899888876542 2222245666666654
No 59
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.86 E-value=1.7e-21 Score=204.08 Aligned_cols=210 Identities=22% Similarity=0.310 Sum_probs=165.0
Q ss_pred CccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHH
Q 003873 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 341 ~~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...++|++||+|.++.|+++|+..+..+..+... ...+++|+|||||+|||+++.+.|..
T Consensus 26 ~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~--------------------~~lPh~L~YgPPGtGktsti~a~a~~ 85 (360)
T KOG0990|consen 26 QYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGM--------------------PGLPHLLFYGPPGTGKTSTILANARD 85 (360)
T ss_pred ccCCCCccCCCCchhhhHhcCCchhhHHHHhccC--------------------CCCCcccccCCCCCCCCCchhhhhhh
Confidence 4568999999999999999999988776655332 23459999999999999999999998
Q ss_pred hCC------cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHH
Q 003873 421 LGF------QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIAD 494 (790)
Q Consensus 421 lg~------~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~ 494 (790)
+-+ .+.|+|+||.|+.... ...+..|-....... .......+++|+||+|.|...+|++++.
T Consensus 86 ly~~~~~~~m~lelnaSd~rgid~v----------r~qi~~fast~~~~~--fst~~~fKlvILDEADaMT~~AQnALRR 153 (360)
T KOG0990|consen 86 FYSPHPTTSMLLELNASDDRGIDPV----------RQQIHLFASTQQPTT--YSTHAAFKLVILDEADAMTRDAQNALRR 153 (360)
T ss_pred hcCCCCchhHHHHhhccCccCCcch----------HHHHHHHHhhcccee--ccccCceeEEEecchhHhhHHHHHHHHH
Confidence 833 3688999999886411 123333322211111 1112356899999999999999999998
Q ss_pred HHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHH
Q 003873 495 LIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAIN 574 (790)
Q Consensus 495 Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn 574 (790)
.++. ...+..|++|||. .....+.+++||..++|.+++..++..++.++|..|.+.++++....++..+.||+|.++|
T Consensus 154 viek-~t~n~rF~ii~n~-~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n 231 (360)
T KOG0990|consen 154 VIEK-YTANTRFATISNP-PQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALN 231 (360)
T ss_pred HHHH-hccceEEEEeccC-hhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHH
Confidence 7764 2345566677774 3445589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC
Q 003873 575 QLQYMSLSLS 584 (790)
Q Consensus 575 ~Lq~~~~~~~ 584 (790)
.||..+....
T Consensus 232 ~Lqs~~~~~~ 241 (360)
T KOG0990|consen 232 YLQSILKKVM 241 (360)
T ss_pred HHHHHHHHhC
Confidence 9998876543
No 60
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.86 E-value=6.4e-20 Score=201.55 Aligned_cols=265 Identities=20% Similarity=0.303 Sum_probs=183.0
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
..+|-.+|||.+|++++|+++.++.|..++..+... +...+++||+||||||||++|+++|++++
T Consensus 12 ~~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~---------------~~~~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 12 EDEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKR---------------GEALDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred cchhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc---------------CCCCCcEEEECCCCccHHHHHHHHHHHhC
Confidence 468899999999999999999999999999875321 13467899999999999999999999999
Q ss_pred CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhc-
Q 003873 423 FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKI- 501 (790)
Q Consensus 423 ~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~- 501 (790)
..+...+...... ...+..++.. .....||||||||.+.....+.+..+++....
T Consensus 77 ~~~~~~~~~~~~~--------------~~~l~~~l~~----------l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~ 132 (328)
T PRK00080 77 VNIRITSGPALEK--------------PGDLAAILTN----------LEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLD 132 (328)
T ss_pred CCeEEEecccccC--------------hHHHHHHHHh----------cccCCEEEEecHhhcchHHHHHHHHHHHhccee
Confidence 9887766543211 1234444433 12356999999999987655555555543210
Q ss_pred ----------------CCCcEEEEecccchhhhhhccccc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003873 502 ----------------SKIPIICICNDRYSQKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR 564 (790)
Q Consensus 502 ----------------s~~pII~I~nd~~~~~l~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~ 564 (790)
....+|+++|. ......+|++|| ..+.|.+++.+++..+|.+.+...++.++++++..|++.
T Consensus 133 ~~l~~~~~~~~~~~~l~~~~li~at~~-~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~ 211 (328)
T PRK00080 133 IMIGKGPAARSIRLDLPPFTLIGATTR-AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARR 211 (328)
T ss_pred eeeccCccccceeecCCCceEEeecCC-cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 11223333432 333446788997 468999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHH---h--cCCCCCHHHHHHHHHhccCCC-CCChH--HHHHHHhc-cCCCcccHHHHHhhcCCCcc
Q 003873 565 VNGDIRMAINQLQYMS---L--SLSVIKYDDIRQRLLSSAKDE-DISPF--TAVDKLFG-FNGGKLRMDERIDLSMSDPD 635 (790)
Q Consensus 565 s~GDiR~aIn~Lq~~~---~--~~~~it~~~v~~~~~~~~kd~-~ls~F--~ai~ki~~-~~~~~~~~~e~id~~~~d~~ 635 (790)
+.|++|.+++.|+.+. . ....|+.+.++..+.....+. .++.. ..+..++. +..+..+++..-..--.+.+
T Consensus 212 ~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~ 291 (328)
T PRK00080 212 SRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERD 291 (328)
T ss_pred cCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcc
Confidence 9999999999997543 2 246788888888776543332 23322 22221221 33445555554433333333
Q ss_pred hH-----HHHHHHHhhh
Q 003873 636 LV-----PLLIQENYIN 647 (790)
Q Consensus 636 ~~-----~l~i~ENYl~ 647 (790)
.+ |.+|..+++.
T Consensus 292 ~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 292 TIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred hHHHHhhHHHHHcCCcc
Confidence 22 3666666664
No 61
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.84 E-value=5e-20 Score=213.85 Aligned_cols=233 Identities=23% Similarity=0.288 Sum_probs=164.9
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML- 421 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel- 421 (790)
+.+|.+||||.+|++|+|++..++.|+..+.. ....++||+||||||||++|+++++..
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~--------------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCG--------------------PNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC--------------------CCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 56899999999999999999999999876543 235789999999999999999998753
Q ss_pred ---------CCcEEEEeCCCCCCchhhhhhcccCCCchhHH---HHHHHHhh-hhc-cccCCCCCceEEEEecCCCCCcc
Q 003873 422 ---------GFQAIEVNASDSRGKADAKISKGIGGSNANSI---KELVSNEA-LSA-NMDRSKHPKTVLIMDEVDGMSAG 487 (790)
Q Consensus 422 ---------g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i---~e~l~~a~-~~~-~~~~~~~~~~VLIIDEiD~L~~~ 487 (790)
+..++++|++..+.... .+...+-++....+ ...+.... ... ..........+|||||++.|+..
T Consensus 112 ~~~~s~~~~~~~fi~id~~~~~~~~~-~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~ 190 (531)
T TIGR02902 112 KNPASPFKEGAAFVEIDATTARFDER-GIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV 190 (531)
T ss_pred hccCCCcCCCCCEEEEccccccCCcc-ccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH
Confidence 35689999864321110 01100000000000 00000000 000 00001234579999999999998
Q ss_pred chhHHHHHHHHhh---------------------------cCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHH
Q 003873 488 DRGGIADLIASIK---------------------------ISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK 540 (790)
Q Consensus 488 ~~~~l~~Ll~~i~---------------------------~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~ 540 (790)
.++.|..+++.-. ...+.+|+.|+.....+.+++++||..+.|.+++.+++..
T Consensus 191 ~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~ 270 (531)
T TIGR02902 191 QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKE 270 (531)
T ss_pred HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHH
Confidence 8888887776311 1223566666665666778999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHh
Q 003873 541 RLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS-----LSVIKYDDIRQRLLS 597 (790)
Q Consensus 541 iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~-----~~~it~~~v~~~~~~ 597 (790)
+++..+.++++.+++++++.|+..+. |.|.++|+++.++.. ...|+.+++...+..
T Consensus 271 Il~~~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 271 IAKNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 99999999999999999999888775 899999999987642 246888888887653
No 62
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.81 E-value=1.9e-19 Score=196.35 Aligned_cols=182 Identities=30% Similarity=0.361 Sum_probs=146.4
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC-------------
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG------------- 422 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg------------- 422 (790)
+++++++..+..+..|+..|.+ .++++||+||||+|||++|+++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~------------------~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~ 62 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGR------------------LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC 62 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCC------------------CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch
Confidence 4789999999999999998632 356799999999999999999999997
Q ss_pred -----------CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhH
Q 003873 423 -----------FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG 491 (790)
Q Consensus 423 -----------~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~ 491 (790)
.+++++|+++.+... ...+.++++........ ..+..+||||||+|.|+..+.++
T Consensus 63 ~~~~~~~~~~~~d~lel~~s~~~~~~----------i~~~~vr~~~~~~~~~~----~~~~~kviiidead~mt~~A~na 128 (325)
T COG0470 63 RSCKLIPAGNHPDFLELNPSDLRKID----------IIVEQVRELAEFLSESP----LEGGYKVVIIDEADKLTEDAANA 128 (325)
T ss_pred hhhhHHhhcCCCceEEecccccCCCc----------chHHHHHHHHHHhccCC----CCCCceEEEeCcHHHHhHHHHHH
Confidence 589999999987642 01234566555433221 13567899999999999988888
Q ss_pred HHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHH
Q 003873 492 IADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571 (790)
Q Consensus 492 l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~ 571 (790)
+..+++. .....+||++|| .....++++++||..++|.+ ..++..||..+ ++.+..++..+.||+|.
T Consensus 129 llk~lEe-p~~~~~~il~~n-~~~~il~tI~SRc~~i~f~~------~~~~~~i~~~e-----~~~l~~i~~~~~gd~r~ 195 (325)
T COG0470 129 LLKTLEE-PPKNTRFILITN-DPSKILPTIRSRCQRIRFKP------PSRLEAIAWLE-----DQGLEEIAAVAEGDARK 195 (325)
T ss_pred HHHHhcc-CCCCeEEEEEcC-ChhhccchhhhcceeeecCC------chHHHHHHHhh-----ccchhHHHHHHHHHHHc
Confidence 8888874 567788999999 46677899999999999998 44555666555 67888999999999999
Q ss_pred HHHHHHHHHhc
Q 003873 572 AINQLQYMSLS 582 (790)
Q Consensus 572 aIn~Lq~~~~~ 582 (790)
++|.||.++..
T Consensus 196 ~i~~lq~~~~~ 206 (325)
T COG0470 196 AINPLQALAAL 206 (325)
T ss_pred CCCHHHHHHHh
Confidence 99999998765
No 63
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.80 E-value=1.7e-18 Score=187.98 Aligned_cols=204 Identities=20% Similarity=0.265 Sum_probs=146.9
Q ss_pred CCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCC
Q 003873 353 KTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432 (790)
Q Consensus 353 ~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd 432 (790)
++|+|++|+++.++.|..|+..+... .....++||+||||||||++|+++|++++..+...+++.
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~---------------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~ 65 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMR---------------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPA 65 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhc---------------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccch
Confidence 47899999999999999999874321 123568999999999999999999999998876665442
Q ss_pred CCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh------------
Q 003873 433 SRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK------------ 500 (790)
Q Consensus 433 ~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~------------ 500 (790)
... ...+..++.. .....||||||+|.+.......+..+++...
T Consensus 66 ~~~--------------~~~l~~~l~~----------~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~ 121 (305)
T TIGR00635 66 LEK--------------PGDLAAILTN----------LEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR 121 (305)
T ss_pred hcC--------------chhHHHHHHh----------cccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc
Confidence 211 1223333333 1234699999999999866666655554222
Q ss_pred ---cCCCcEEEEecccc-hhhhhhcccccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHH
Q 003873 501 ---ISKIPIICICNDRY-SQKLKSLVNYCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575 (790)
Q Consensus 501 ---~s~~pII~I~nd~~-~~~l~~L~sR~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~ 575 (790)
....|+++|..... .....++++||. .+.|.+++.+++..+|...+...++.+++++++.|++.+.|++|.++++
T Consensus 122 ~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~l 201 (305)
T TIGR00635 122 SVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRL 201 (305)
T ss_pred ceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHH
Confidence 11123444332222 233467889984 5799999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-----cCCCCCHHHHHHHH
Q 003873 576 LQYMSL-----SLSVIKYDDIRQRL 595 (790)
Q Consensus 576 Lq~~~~-----~~~~it~~~v~~~~ 595 (790)
+..+.. ....++.+.++..+
T Consensus 202 l~~~~~~a~~~~~~~it~~~v~~~l 226 (305)
T TIGR00635 202 LRRVRDFAQVRGQKIINRDIALKAL 226 (305)
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 876532 23446666665544
No 64
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.76 E-value=1.7e-17 Score=183.09 Aligned_cols=202 Identities=17% Similarity=0.272 Sum_probs=146.2
Q ss_pred hcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcE---
Q 003873 349 KYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA--- 425 (790)
Q Consensus 349 KY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~i--- 425 (790)
...|+.+.+|+||+.+++.|...+.. +..++++||+||+|+||||+|+.+|+.+.+..
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~-------------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~ 76 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYRE-------------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPA 76 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHc-------------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccc
Confidence 37899999999999999999988876 13568999999999999999999999997621
Q ss_pred ---EE-EeCCCCCCchhhhhhcc-------c------------CCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCC
Q 003873 426 ---IE-VNASDSRGKADAKISKG-------I------------GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVD 482 (790)
Q Consensus 426 ---iE-inaSd~rsk~~~~i~~~-------~------------g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD 482 (790)
.. .++...+. ....+... + .....+.++++....... ...+.++||||||+|
T Consensus 77 ~~~~~~~~~~~~c~-~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~----~~~g~~rVviIDeAd 151 (351)
T PRK09112 77 EAPETLADPDPASP-VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQT----SGDGNWRIVIIDPAD 151 (351)
T ss_pred cCccccCCCCCCCH-HHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhc----cccCCceEEEEEchh
Confidence 11 11111111 10111000 0 011234555444332221 124567899999999
Q ss_pred CCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003873 483 GMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELA 562 (790)
Q Consensus 483 ~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia 562 (790)
.|+....+.+..+++. ...+..+|++++. ....++++++||..++|.+++.+++..+|...+..++ ++++++..|+
T Consensus 152 ~l~~~aanaLLk~LEE-pp~~~~fiLit~~-~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~ 227 (351)
T PRK09112 152 DMNRNAANAILKTLEE-PPARALFILISHS-SGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALL 227 (351)
T ss_pred hcCHHHHHHHHHHHhc-CCCCceEEEEECC-hhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHH
Confidence 9998888887777774 2334556666654 5567799999999999999999999999998664444 7799999999
Q ss_pred HHccCCHHHHHHHHHH
Q 003873 563 DRVNGDIRMAINQLQY 578 (790)
Q Consensus 563 ~~s~GDiR~aIn~Lq~ 578 (790)
..++|++|.++++|+.
T Consensus 228 ~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 228 QRSKGSVRKALLLLNY 243 (351)
T ss_pred HHcCCCHHHHHHHHhc
Confidence 9999999999999864
No 65
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.76 E-value=3.5e-17 Score=171.57 Aligned_cols=196 Identities=17% Similarity=0.158 Sum_probs=142.9
Q ss_pred CCcccc--CCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEE
Q 003873 354 TPNEIV--GNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEV 428 (790)
Q Consensus 354 sl~dLv--G~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEi 428 (790)
+|++++ .|...+..+..|...| ....++|+||+|||||++++++|+++ |..+.++
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~--------------------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~ 79 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQE--------------------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYV 79 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCC--------------------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 577777 3666777776666542 23589999999999999999999876 4556666
Q ss_pred eCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc--chhHHHHHHHHhhcCC-Cc
Q 003873 429 NASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG--DRGGIADLIASIKISK-IP 505 (790)
Q Consensus 429 naSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~--~~~~l~~Ll~~i~~s~-~p 505 (790)
+...... ...+++... ....+|||||++.+... .+..+..+++.+.... ..
T Consensus 80 ~~~~~~~----------------~~~~~~~~~----------~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~ 133 (235)
T PRK08084 80 PLDKRAW----------------FVPEVLEGM----------EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTR 133 (235)
T ss_pred EHHHHhh----------------hhHHHHHHh----------hhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCe
Confidence 5543110 111222211 01248999999999763 3456666776654444 46
Q ss_pred EEEEecccchh---hhhhccccc---cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 003873 506 IICICNDRYSQ---KLKSLVNYC---SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579 (790)
Q Consensus 506 II~I~nd~~~~---~l~~L~sR~---~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~ 579 (790)
+|++++..... .++.|++|+ ..+.+.+|+.+++..+|++.+..+++.+++++++.|++++.||+|.+++.|+.+
T Consensus 134 li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 134 LLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred EEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 77777754433 458899998 789999999999999999989989999999999999999999999999999875
Q ss_pred Hh----cCCCCCHHHHHHHH
Q 003873 580 SL----SLSVIKYDDIRQRL 595 (790)
Q Consensus 580 ~~----~~~~it~~~v~~~~ 595 (790)
.. .+..||.+.+++.+
T Consensus 214 ~~~~l~~~~~it~~~~k~~l 233 (235)
T PRK08084 214 DRASITAQRKLTIPFVKEIL 233 (235)
T ss_pred HHHHHhcCCCCCHHHHHHHH
Confidence 42 24668887777654
No 66
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.75 E-value=2.1e-17 Score=184.77 Aligned_cols=202 Identities=15% Similarity=0.230 Sum_probs=140.7
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCC
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDS 433 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~ 433 (790)
.|++|+||+.+++.|++++..+...+ .......++++||+||+|+|||++|+.+|+.+.|+.....+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~----------~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~ 72 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV----------AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGE 72 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc----------cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 57899999999999999999853211 01112357899999999999999999999998775211111111
Q ss_pred CCch---------hh-hhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCC
Q 003873 434 RGKA---------DA-KISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISK 503 (790)
Q Consensus 434 rsk~---------~~-~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~ 503 (790)
+..+ +. .+...-.....+.+++++..+...+ ....++|+||||+|.|+....+.+..+++.- ...
T Consensus 73 C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p----~~~~~kViiIDead~m~~~aanaLLk~LEep-~~~ 147 (394)
T PRK07940 73 CRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRP----STGRWRIVVIEDADRLTERAANALLKAVEEP-PPR 147 (394)
T ss_pred CHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCc----ccCCcEEEEEechhhcCHHHHHHHHHHhhcC-CCC
Confidence 1000 00 0000001123566788777665433 2456789999999999987777777776631 223
Q ss_pred CcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 003873 504 IPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576 (790)
Q Consensus 504 ~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~L 576 (790)
..+|+++++ ....++++++||..+.|.+|+.+++..+|.. .+ .++++.+..++..++|+++.++.++
T Consensus 148 ~~fIL~a~~-~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~--~~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 148 TVWLLCAPS-PEDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RD--GVDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CeEEEEECC-hHHChHHHHhhCeEEECCCCCHHHHHHHHHH---hc--CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 345555555 6677899999999999999999999888873 22 3678889999999999999988776
No 67
>PRK08727 hypothetical protein; Validated
Probab=99.75 E-value=7.4e-17 Score=168.92 Aligned_cols=173 Identities=16% Similarity=0.234 Sum_probs=132.5
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK 473 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~ 473 (790)
...++|+||+|||||++++++|.++ |+.+++++..+.. ..+.+.+... ...
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~----------------~~~~~~~~~l----------~~~ 94 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA----------------GRLRDALEAL----------EGR 94 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh----------------hhHHHHHHHH----------hcC
Confidence 3569999999999999999997765 6677777654321 1122333221 223
Q ss_pred eEEEEecCCCCCcc--chhHHHHHHHHhhcCCCcEEEEecccchh---hhhhcccc---ccccccCCCCHHHHHHHHHHH
Q 003873 474 TVLIMDEVDGMSAG--DRGGIADLIASIKISKIPIICICNDRYSQ---KLKSLVNY---CSDLRFRKPRKQEIAKRLMQI 545 (790)
Q Consensus 474 ~VLIIDEiD~L~~~--~~~~l~~Ll~~i~~s~~pII~I~nd~~~~---~l~~L~sR---~~~I~F~~pt~~ei~~iL~~I 545 (790)
.+|+|||++.+... .+..+..+++.......+||++++..... .++.|++| |..+.|.+|+.+++..+|+++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 59999999998753 34556677777666677899999864433 35788888 889999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh----cCCCCCHHHHHHHH
Q 003873 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL----SLSVIKYDDIRQRL 595 (790)
Q Consensus 546 ~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~----~~~~it~~~v~~~~ 595 (790)
|..+++.+++++++.|++.+.||+|.++++|+.+.. .+..||.+.+++.+
T Consensus 175 a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~~~l 228 (233)
T PRK08727 175 AQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPFLRRVL 228 (233)
T ss_pred HHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999999999999999999976542 24567777777655
No 68
>PRK06893 DNA replication initiation factor; Validated
Probab=99.75 E-value=7e-17 Score=168.65 Aligned_cols=201 Identities=16% Similarity=0.205 Sum_probs=140.5
Q ss_pred CCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEE
Q 003873 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIE 427 (790)
Q Consensus 351 ~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiE 427 (790)
.+.+|+++++++... .+..+.+.|.. ...+.++|+||||||||++++++|+++ +..+.+
T Consensus 11 ~~~~fd~f~~~~~~~-~~~~~~~~~~~-----------------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y 72 (229)
T PRK06893 11 DDETLDNFYADNNLL-LLDSLRKNFID-----------------LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIY 72 (229)
T ss_pred CcccccccccCChHH-HHHHHHHHhhc-----------------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 356899999876432 33444443311 123568999999999999999999886 445555
Q ss_pred EeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--hhHHHHHHHHhhcCCCc
Q 003873 428 VNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--RGGIADLIASIKISKIP 505 (790)
Q Consensus 428 inaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--~~~l~~Ll~~i~~s~~p 505 (790)
++...... ...+++.. -....+|+|||++.+.... +..+..+++.+.....+
T Consensus 73 ~~~~~~~~----------------~~~~~~~~----------~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~ 126 (229)
T PRK06893 73 IPLSKSQY----------------FSPAVLEN----------LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKT 126 (229)
T ss_pred eeHHHhhh----------------hhHHHHhh----------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCc
Confidence 55432100 01122222 1233699999999987532 34677777776666666
Q ss_pred EEEEecccchh----hhhhcccccc---ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 003873 506 IICICNDRYSQ----KLKSLVNYCS---DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578 (790)
Q Consensus 506 II~I~nd~~~~----~l~~L~sR~~---~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~ 578 (790)
+|+++.+.... .++.|++|+. .+.+.+|+.+++..+|++.|..+++.+++++++.|++++.||+|.+++.|+.
T Consensus 127 illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~ 206 (229)
T PRK06893 127 LLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDL 206 (229)
T ss_pred EEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 65554433222 2367888875 7999999999999999999999999999999999999999999999999976
Q ss_pred HHh---c-CCCCCHHHHHHHH
Q 003873 579 MSL---S-LSVIKYDDIRQRL 595 (790)
Q Consensus 579 ~~~---~-~~~it~~~v~~~~ 595 (790)
+.. . +..||...+++.+
T Consensus 207 l~~~~~~~~~~it~~~v~~~L 227 (229)
T PRK06893 207 LDKASLQAQRKLTIPFVKEIL 227 (229)
T ss_pred HHHHHHhcCCCCCHHHHHHHh
Confidence 532 2 4567877777654
No 69
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.74 E-value=1.3e-16 Score=165.48 Aligned_cols=198 Identities=15% Similarity=0.173 Sum_probs=146.4
Q ss_pred CCCCccccC--CHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEE
Q 003873 352 PKTPNEIVG--NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAI 426 (790)
Q Consensus 352 P~sl~dLvG--~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~ii 426 (790)
|.+|++++. +...++.++.|+..| ....++|+||+|||||++|+.+++++ +..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~ 70 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGK--------------------GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAI 70 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcC--------------------CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEE
Confidence 456777773 677889988887652 35799999999999999999999876 46778
Q ss_pred EEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--hhHHHHHHHHhhcCCC
Q 003873 427 EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--RGGIADLIASIKISKI 504 (790)
Q Consensus 427 EinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--~~~l~~Ll~~i~~s~~ 504 (790)
++++++... ...+++.. .....+|||||+|.+.... +..+..+++.+.....
T Consensus 71 ~i~~~~~~~----------------~~~~~~~~----------~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~ 124 (226)
T TIGR03420 71 YLPLAELAQ----------------ADPEVLEG----------LEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGG 124 (226)
T ss_pred EEeHHHHHH----------------hHHHHHhh----------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCC
Confidence 887764311 11122221 1123599999999998744 6777777776655556
Q ss_pred cEEEEecccchhh--h-hhccccc---cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 003873 505 PIICICNDRYSQK--L-KSLVNYC---SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578 (790)
Q Consensus 505 pII~I~nd~~~~~--l-~~L~sR~---~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~ 578 (790)
++|++++...... . ..|.+|+ ..+.+.+++.+++..+|...+.+.++.+++++++.|+..+.||+|.+.+.|+.
T Consensus 125 ~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 125 RLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred eEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 7888777543221 1 4566664 57999999999999999999988999999999999999999999999999865
Q ss_pred HH----hcCCCCCHHHHHHHH
Q 003873 579 MS----LSLSVIKYDDIRQRL 595 (790)
Q Consensus 579 ~~----~~~~~it~~~v~~~~ 595 (790)
+. ..++.|+.+.+++.+
T Consensus 205 ~~~~~~~~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 205 LDRASLAAKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHhCCCCCHHHHHHHh
Confidence 43 235667777776643
No 70
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.73 E-value=9.4e-17 Score=187.18 Aligned_cols=225 Identities=20% Similarity=0.238 Sum_probs=156.0
Q ss_pred hhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh------
Q 003873 348 EKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML------ 421 (790)
Q Consensus 348 eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel------ 421 (790)
.-|-| +.|.+++..+++|..+|..+... ......|+|+|+||||||++++.+++++
T Consensus 750 ~DYVP---D~LPhREeEIeeLasfL~paIkg---------------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeq 811 (1164)
T PTZ00112 750 LDVVP---KYLPCREKEIKEVHGFLESGIKQ---------------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQ 811 (1164)
T ss_pred cccCC---CcCCChHHHHHHHHHHHHHHHhc---------------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 45666 67999999999999999884321 1233567899999999999999998877
Q ss_pred ----CCcEEEEeCCCCCCchh--hhhhccc-CC------CchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc
Q 003873 422 ----GFQAIEVNASDSRGKAD--AKISKGI-GG------SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD 488 (790)
Q Consensus 422 ----g~~iiEinaSd~rsk~~--~~i~~~~-g~------s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~ 488 (790)
.+.++++||........ ..|...+ +. .....+..++.... .......||||||||.|....
T Consensus 812 k~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~------k~~r~v~IIILDEID~L~kK~ 885 (1164)
T PTZ00112 812 KLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNK------KDNRNVSILIIDEIDYLITKT 885 (1164)
T ss_pred ccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhh------cccccceEEEeehHhhhCccH
Confidence 26789999975443321 1222222 11 11122333332211 012334699999999999876
Q ss_pred hhHHHHHHHHhh--cCCCcEEEEeccc--chhhhhhccccccc--cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003873 489 RGGIADLIASIK--ISKIPIICICNDR--YSQKLKSLVNYCSD--LRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELA 562 (790)
Q Consensus 489 ~~~l~~Ll~~i~--~s~~pII~I~nd~--~~~~l~~L~sR~~~--I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia 562 (790)
+..|..|+++.. ..++.||+|+|+. ...+++.+++|+.. |.|.|++.+++..+|...+......+++++++.||
T Consensus 886 QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIA 965 (1164)
T PTZ00112 886 QKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCA 965 (1164)
T ss_pred HHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 777887887654 3345566778753 23334677777654 99999999999999999887654568999999999
Q ss_pred H---HccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHH
Q 003873 563 D---RVNGDIRMAINQLQYMSLS--LSVIKYDDIRQRLL 596 (790)
Q Consensus 563 ~---~s~GDiR~aIn~Lq~~~~~--~~~it~~~v~~~~~ 596 (790)
+ ..+||+|.||++|..+... ...|+.++|..+..
T Consensus 966 rkVAq~SGDARKALDILRrAgEikegskVT~eHVrkAle 1004 (1164)
T PTZ00112 966 RKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATN 1004 (1164)
T ss_pred HhhhhcCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 8 6689999999999877653 34567777766553
No 71
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.73 E-value=3.3e-16 Score=163.08 Aligned_cols=196 Identities=15% Similarity=0.162 Sum_probs=145.1
Q ss_pred CCCCCcccc--CCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcE
Q 003873 351 RPKTPNEIV--GNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQA 425 (790)
Q Consensus 351 ~P~sl~dLv--G~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~i 425 (790)
.|.+|++++ ++...+..++.|...+ ....+++|+||+|||||++|+++++++ +..+
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~-------------------~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~ 73 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGP-------------------VADRFFYLWGEAGSGRSHLLQALVADASYGGRNA 73 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhcc-------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcE
Confidence 456789988 3566667776666521 134789999999999999999999876 6677
Q ss_pred EEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCc
Q 003873 426 IEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIP 505 (790)
Q Consensus 426 iEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~p 505 (790)
+++++.+.. ..+.. .....+|||||+|.+....+..+..+++.......+
T Consensus 74 ~~i~~~~~~--------------------~~~~~----------~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~ 123 (227)
T PRK08903 74 RYLDAASPL--------------------LAFDF----------DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQG 123 (227)
T ss_pred EEEehHHhH--------------------HHHhh----------cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCc
Confidence 777765420 00100 122458999999999877777788888766655566
Q ss_pred EEEEecccch---hhhhhccccc---cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 003873 506 IICICNDRYS---QKLKSLVNYC---SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579 (790)
Q Consensus 506 II~I~nd~~~---~~l~~L~sR~---~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~ 579 (790)
+|+++++... ...+.|.+|+ ..+.+.+|+..+...+|..++..+++.+++++++.|+..+.||+|++++.|+.+
T Consensus 124 ~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 124 ALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred EEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5555544222 1225566664 789999999999999999999999999999999999999999999988888765
Q ss_pred H----hcCCCCCHHHHHHHH
Q 003873 580 S----LSLSVIKYDDIRQRL 595 (790)
Q Consensus 580 ~----~~~~~it~~~v~~~~ 595 (790)
. ..+..||...+++.+
T Consensus 204 ~~~~~~~~~~i~~~~~~~~l 223 (227)
T PRK08903 204 DRYSLEQKRPVTLPLLREML 223 (227)
T ss_pred HHHHHHhCCCCCHHHHHHHH
Confidence 4 335678888887765
No 72
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=99.72 E-value=1.8e-17 Score=180.26 Aligned_cols=102 Identities=22% Similarity=0.355 Sum_probs=85.5
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCc-chHH
Q 003873 180 FMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAG-AKST 258 (790)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~-~K~~ 258 (790)
|..-..+.+++.+++...+.|. ..++|++|||||.|+ ++|+|++++|+++||+|.+|||++|||||+|+.+|. +|++
T Consensus 209 ~~~~~~~~~~~~~np~~~~~~~-~l~~g~~~v~TG~l~-~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~ 286 (313)
T PRK06063 209 LKALAARMPCPYLNPGRYVAGR-PLVQGMRVALSAEVS-RTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGY 286 (313)
T ss_pred hhhcccCCCCCCCCCCCCCCCC-cccCCCEEEEecCCC-CCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHH
Confidence 4445555556666554444442 236899999999997 899999999999999999999999999999998874 8999
Q ss_pred HHHHhCCceeCHHHHHHHHhhcCCc
Q 003873 259 KAKELGTPFLTEDGLFDMIRASKPM 283 (790)
Q Consensus 259 kA~~~~i~ii~e~~f~~~l~~~~~~ 283 (790)
||+++||+||+|++|++||....|+
T Consensus 287 kA~~~gi~ii~e~~f~~ll~~~~~~ 311 (313)
T PRK06063 287 HARQLGVPVLDEAAFLELLRAVVGG 311 (313)
T ss_pred HHHHcCCccccHHHHHHHHHhhcCC
Confidence 9999999999999999999876553
No 73
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.72 E-value=1.7e-16 Score=168.98 Aligned_cols=203 Identities=19% Similarity=0.274 Sum_probs=136.0
Q ss_pred CccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---C----CcEEE
Q 003873 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---G----FQAIE 427 (790)
Q Consensus 355 l~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g----~~iiE 427 (790)
+++|+|.+.+++.|+.+.. |........ ..|. ...+...++||+|||||||||+|+++|+.+ + ..+++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~-~~~~~~~~~--~~g~--~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~ 79 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYA-WIQINEKRK--EEGL--KTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE 79 (261)
T ss_pred HHHhcChHHHHHHHHHHHH-HHHHHHHHH--HcCC--CCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE
Confidence 6789999988888776553 332211110 1111 112345789999999999999999999876 2 25666
Q ss_pred EeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-----hhHHHHHHHHhhcC
Q 003873 428 VNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-----RGGIADLIASIKIS 502 (790)
Q Consensus 428 inaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-----~~~l~~Ll~~i~~s 502 (790)
+++++..+. .++. ....+.+++..+ ...||||||+|.|.... ...+..|+..++..
T Consensus 80 ~~~~~l~~~-------~~g~-~~~~~~~~~~~a-----------~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~ 140 (261)
T TIGR02881 80 VERADLVGE-------YIGH-TAQKTREVIKKA-----------LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN 140 (261)
T ss_pred ecHHHhhhh-------hccc-hHHHHHHHHHhc-----------cCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc
Confidence 666553221 2222 223455566543 13599999999997421 23556667666555
Q ss_pred CCcEEEEe-ccc-----chhhhhhccccc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----------c
Q 003873 503 KIPIICIC-NDR-----YSQKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR----------V 565 (790)
Q Consensus 503 ~~pII~I~-nd~-----~~~~l~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~----------s 565 (790)
...+++|+ +.. +....+.|++|+ ..|.|++++.+++..++++++...++.++++++..|++. +
T Consensus 141 ~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~ 220 (261)
T TIGR02881 141 RNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSRE 220 (261)
T ss_pred CCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCC
Confidence 44444332 211 112236888998 569999999999999999999999999999999988654 3
Q ss_pred cCCHHHHHHHHHHHHh
Q 003873 566 NGDIRMAINQLQYMSL 581 (790)
Q Consensus 566 ~GDiR~aIn~Lq~~~~ 581 (790)
.||.|.+.|+++.+..
T Consensus 221 ~gn~R~~~n~~e~a~~ 236 (261)
T TIGR02881 221 FSNARYVRNIIEKAIR 236 (261)
T ss_pred CchHHHHHHHHHHHHH
Confidence 6999999999987653
No 74
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=99.71 E-value=9.4e-18 Score=191.98 Aligned_cols=75 Identities=40% Similarity=0.717 Sum_probs=72.9
Q ss_pred CCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHh
Q 003873 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR 278 (790)
Q Consensus 203 ~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~ 278 (790)
.+|+||||||||+|+.|+|+|++++++++||+|++|||+||||||+|+++| ||++||++|||+||+|++|+++|.
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aG-SKl~kA~eLgv~i~~E~~~~~ll~ 667 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAG-SKLAKAQELGVKIIDEEEFLALLG 667 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceecccccEEEEcCCCC-hHHHHHHHcCCeEecHHHHHHhhC
Confidence 689999999999999999999999999999999999999999999999999 799999999999999999999973
No 75
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.71 E-value=1.8e-16 Score=175.80 Aligned_cols=197 Identities=17% Similarity=0.258 Sum_probs=140.2
Q ss_pred cCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEE-E
Q 003873 350 YRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE-V 428 (790)
Q Consensus 350 Y~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE-i 428 (790)
.+|+++++|+||+.+++.|.+.+.. +..++++||+||+|+||+++|..+|+.+.|.--. -
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-------------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~ 73 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-------------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGG 73 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-------------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCC
Confidence 6899999999999999999988876 2457899999999999999999999998653210 0
Q ss_pred eC----------CCCCCchhhhh-----------hc---cc-----CCCchhHHHHHHHHhhhhccccCCCCCceEEEEe
Q 003873 429 NA----------SDSRGKADAKI-----------SK---GI-----GGSNANSIKELVSNEALSANMDRSKHPKTVLIMD 479 (790)
Q Consensus 429 na----------Sd~rsk~~~~i-----------~~---~~-----g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIID 479 (790)
.+ .... .....+ +. .- .....+.++++........ ....++|||||
T Consensus 74 ~~~~~~~~~l~~~~~c-~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~----~~~~~kVviID 148 (365)
T PRK07471 74 DGAVPPPTSLAIDPDH-PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTA----AEGGWRVVIVD 148 (365)
T ss_pred CccccccccccCCCCC-hHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCc----ccCCCEEEEEe
Confidence 00 0000 000011 00 00 0112456776665543322 24567899999
Q ss_pred cCCCCCccchhHHHHHHHHhhcCCCc-EEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 003873 480 EVDGMSAGDRGGIADLIASIKISKIP-IICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIAL 558 (790)
Q Consensus 480 EiD~L~~~~~~~l~~Ll~~i~~s~~p-II~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l 558 (790)
|+|.|+....+.|..+++ +.+..+ +|++|++ ....++++++||..+.|.+++.+++...|... ....++..+
T Consensus 149 ead~m~~~aanaLLK~LE--epp~~~~~IL~t~~-~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~ 221 (365)
T PRK07471 149 TADEMNANAANALLKVLE--EPPARSLFLLVSHA-PARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPR 221 (365)
T ss_pred chHhcCHHHHHHHHHHHh--cCCCCeEEEEEECC-chhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHH
Confidence 999999877777777776 333344 5555554 45677999999999999999999999988764 234556666
Q ss_pred HHHHHHccCCHHHHHHHHH
Q 003873 559 EELADRVNGDIRMAINQLQ 577 (790)
Q Consensus 559 ~~Ia~~s~GDiR~aIn~Lq 577 (790)
..++..++|+++.++++++
T Consensus 222 ~~l~~~s~Gsp~~Al~ll~ 240 (365)
T PRK07471 222 AALAALAEGSVGRALRLAG 240 (365)
T ss_pred HHHHHHcCCCHHHHHHHhc
Confidence 8899999999999998875
No 76
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.71 E-value=3.7e-16 Score=170.69 Aligned_cols=182 Identities=17% Similarity=0.261 Sum_probs=138.1
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc--------E
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ--------A 425 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~--------i 425 (790)
+|+||+||+.+++.|..|+.. +..++++||+||+|+|||++|+.+|+.+.|. +
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~ 62 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDI 62 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCe
Confidence 589999999999999999876 1357899999999999999999999988553 2
Q ss_pred EEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCc
Q 003873 426 IEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIP 505 (790)
Q Consensus 426 iEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~p 505 (790)
+++.+.+. .....+.+++++......+ ..+.++|+|||++|.|+..+.+.+...++. ....+.
T Consensus 63 ~~~~~~~~------------~~i~v~~ir~~~~~~~~~p----~~~~~kv~iI~~ad~m~~~a~naLLK~LEe-pp~~t~ 125 (313)
T PRK05564 63 IEFKPINK------------KSIGVDDIRNIIEEVNKKP----YEGDKKVIIIYNSEKMTEQAQNAFLKTIEE-PPKGVF 125 (313)
T ss_pred EEeccccC------------CCCCHHHHHHHHHHHhcCc----ccCCceEEEEechhhcCHHHHHHHHHHhcC-CCCCeE
Confidence 33332111 1122456777776544322 245678999999999998888877777773 233445
Q ss_pred EEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 003873 506 IICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576 (790)
Q Consensus 506 II~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~L 576 (790)
+|++|++ ....++++++||..+.|.+++.+++...|...+. .++++.+..++..++|.+..++..+
T Consensus 126 ~il~~~~-~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~ 191 (313)
T PRK05564 126 IILLCEN-LEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFI 191 (313)
T ss_pred EEEEeCC-hHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 6666654 5677899999999999999999999988876432 5778889999999999998887655
No 77
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.70 E-value=1.5e-16 Score=162.44 Aligned_cols=222 Identities=21% Similarity=0.328 Sum_probs=153.2
Q ss_pred hhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 348 EKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 348 eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
+-..-.+|+|+|||+...++.+-.++...+. ...+.-.++++|||||||||||.+|++||++...+++-
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenP-----------e~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~ 181 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENP-----------ERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLL 181 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhCh-----------HHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEE
Confidence 4555668999999998776655444432111 00112357999999999999999999999999999999
Q ss_pred EeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-----hh----HHHHHHHH
Q 003873 428 VNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-----RG----GIADLIAS 498 (790)
Q Consensus 428 inaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-----~~----~l~~Ll~~ 498 (790)
+++... |...+|. ....|.++...+. +..++|+||||+|.+.-.. ++ .++.|+-.
T Consensus 182 vkat~l-------iGehVGd-gar~Ihely~rA~--------~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTe 245 (368)
T COG1223 182 VKATEL-------IGEHVGD-GARRIHELYERAR--------KAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTE 245 (368)
T ss_pred echHHH-------HHHHhhh-HHHHHHHHHHHHH--------hcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHh
Confidence 998753 4444433 2456888888765 4668999999999875421 12 33344433
Q ss_pred hhc--CCCcEEEEecccchhhh-hhccccccc-cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC----CHH
Q 003873 499 IKI--SKIPIICICNDRYSQKL-KSLVNYCSD-LRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG----DIR 570 (790)
Q Consensus 499 i~~--s~~pII~I~nd~~~~~l-~~L~sR~~~-I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G----DiR 570 (790)
+.. .+--|+.||.++....| +.+++|+.. |.|.-|+.+++..+|...++...+.++.. ++.++..+.| ||-
T Consensus 246 lDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdik 324 (368)
T COG1223 246 LDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIK 324 (368)
T ss_pred ccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHH
Confidence 321 23346666665566666 678899764 99999999999999999998888877765 7778877654 443
Q ss_pred H-HH-HHH-HHHHhcCCCCCHHHHHHHHHh
Q 003873 571 M-AI-NQL-QYMSLSLSVIKYDDIRQRLLS 597 (790)
Q Consensus 571 ~-aI-n~L-q~~~~~~~~it~~~v~~~~~~ 597 (790)
. +| ..| +.++.....|+.+++..++..
T Consensus 325 ekvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 325 EKVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred HHHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 2 11 222 555556677888887776654
No 78
>PRK06620 hypothetical protein; Validated
Probab=99.70 E-value=4e-16 Score=161.15 Aligned_cols=188 Identities=13% Similarity=0.212 Sum_probs=134.0
Q ss_pred CCccccC---CHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeC
Q 003873 354 TPNEIVG---NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430 (790)
Q Consensus 354 sl~dLvG---~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEina 430 (790)
+|+++|. |......++.|...|.. ++..+.++||||||||||++++++|+..+..++. .
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~----------------~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~ 75 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGV----------------NPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--D 75 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHcccc----------------CCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--h
Confidence 4666555 45566666666655421 0113689999999999999999999887642211 0
Q ss_pred CCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEe
Q 003873 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICIC 510 (790)
Q Consensus 431 Sd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~ 510 (790)
.. ...+++ ....+|+|||||.+. ...+..+++.+......+|+++
T Consensus 76 ~~-------------------~~~~~~-------------~~~d~lliDdi~~~~---~~~lf~l~N~~~e~g~~ilits 120 (214)
T PRK06620 76 IF-------------------FNEEIL-------------EKYNAFIIEDIENWQ---EPALLHIFNIINEKQKYLLLTS 120 (214)
T ss_pred hh-------------------hchhHH-------------hcCCEEEEeccccch---HHHHHHHHHHHHhcCCEEEEEc
Confidence 00 000111 123589999999652 2467778887777777666666
Q ss_pred cccchh-hhhhcccccc---ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh----c
Q 003873 511 NDRYSQ-KLKSLVNYCS---DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL----S 582 (790)
Q Consensus 511 nd~~~~-~l~~L~sR~~---~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~----~ 582 (790)
+..... .++.|++|+. .+.+.+|+.+++..+|++.+...++.+++++++.|++++.||+|.+++.|+.+.. .
T Consensus 121 ~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~ 200 (214)
T PRK06620 121 SDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALIS 200 (214)
T ss_pred CCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHc
Confidence 533221 1478899977 8999999999999999999998999999999999999999999999999987542 2
Q ss_pred CCCCCHHHHHHH
Q 003873 583 LSVIKYDDIRQR 594 (790)
Q Consensus 583 ~~~it~~~v~~~ 594 (790)
+..||...+++.
T Consensus 201 ~~~it~~~~~~~ 212 (214)
T PRK06620 201 KRKITISLVKEV 212 (214)
T ss_pred CCCCCHHHHHHH
Confidence 345777766654
No 79
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.1e-16 Score=167.14 Aligned_cols=225 Identities=20% Similarity=0.283 Sum_probs=152.2
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
.|=+++---.+++||=|-+.++++|++.++.=.. +.. .....+-.+++.+|||||||||||.||+++|++.++
T Consensus 139 ~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~---~PE----lF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A 211 (406)
T COG1222 139 VMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLK---NPE----LFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA 211 (406)
T ss_pred eeeeccCCCCChhhccCHHHHHHHHHHHhccccc---CHH----HHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc
Confidence 3445554455899999999999999999886111 000 001123367899999999999999999999999999
Q ss_pred cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc--------cchh---HH
Q 003873 424 QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA--------GDRG---GI 492 (790)
Q Consensus 424 ~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~--------~~~~---~l 492 (790)
.|+.+..|. .+.+++|... ..++++|.-+. .+.++||||||||.+.. +++. .+
T Consensus 212 tFIrvvgSE-------lVqKYiGEGa-RlVRelF~lAr--------ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTm 275 (406)
T COG1222 212 TFIRVVGSE-------LVQKYIGEGA-RLVRELFELAR--------EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTM 275 (406)
T ss_pred eEEEeccHH-------HHHHHhccch-HHHHHHHHHHh--------hcCCeEEEEechhhhhcccccCCCCchHHHHHHH
Confidence 999999885 4566665443 46888887765 46789999999999854 2333 44
Q ss_pred HHHHHHhh----cCCCcEEEEecccchhhhhhccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 003873 493 ADLIASIK----ISKIPIICICNDRYSQKLKSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV 565 (790)
Q Consensus 493 ~~Ll~~i~----~s~~pII~I~nd~~~~~l~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s 565 (790)
.+|+..+. ..++.||+.+|. ...+-+.|++ |+. .|.|+.|+.....++|+-.+.+-.+. ++-.++.|+..+
T Consensus 276 leLL~qlDGFD~~~nvKVI~ATNR-~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~ 353 (406)
T COG1222 276 LELLNQLDGFDPRGNVKVIMATNR-PDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLT 353 (406)
T ss_pred HHHHHhccCCCCCCCeEEEEecCC-ccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhc
Confidence 45555443 345567777763 3323344542 333 48999999999999999888765543 112255566555
Q ss_pred c----CCHHHHHHHHHHHHhc--CCCCCHHHHHH
Q 003873 566 N----GDIRMAINQLQYMSLS--LSVIKYDDIRQ 593 (790)
Q Consensus 566 ~----GDiR~aIn~Lq~~~~~--~~~it~~~v~~ 593 (790)
. -|++.+..-.-+++.. ...++.++..+
T Consensus 354 ~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~ 387 (406)
T COG1222 354 EGFSGADLKAICTEAGMFAIRERRDEVTMEDFLK 387 (406)
T ss_pred CCCchHHHHHHHHHHhHHHHHhccCeecHHHHHH
Confidence 3 3777777666666654 45566665544
No 80
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.69 E-value=1.3e-15 Score=169.42 Aligned_cols=227 Identities=18% Similarity=0.215 Sum_probs=152.0
Q ss_pred hhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC--
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG-- 422 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg-- 422 (790)
.+...|.|. +|+|++..+++|..+|..+.. +..+.+++|+||||||||++++.+++++.
T Consensus 7 ~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~----------------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 7 LLEPDYVPD---RIVHRDEQIEELAKALRPILR----------------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred hCCCCCCCC---CCCCcHHHHHHHHHHHHHHHc----------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 456788884 789999999999999987432 12356899999999999999999998763
Q ss_pred -------CcEEEEeCCCCCCchh--hhhhccc---CCC------c-hhHHHHHHHHhhhhccccCCCCCceEEEEecCCC
Q 003873 423 -------FQAIEVNASDSRGKAD--AKISKGI---GGS------N-ANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG 483 (790)
Q Consensus 423 -------~~iiEinaSd~rsk~~--~~i~~~~---g~s------~-~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~ 483 (790)
+.++++||....+... ..+...+ +.. . ...+..++.... ......||||||+|.
T Consensus 68 ~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~~~vlvIDE~d~ 140 (365)
T TIGR02928 68 AEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELN-------ERGDSLIIVLDEIDY 140 (365)
T ss_pred hhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH-------hcCCeEEEEECchhh
Confidence 6789999976554321 1111111 110 1 111222222111 123457899999999
Q ss_pred CCccchhHHHHHHHHh-----hcCCCcEEEEecccch--hhhhhccccc--cccccCCCCHHHHHHHHHHHHHH--cCCC
Q 003873 484 MSAGDRGGIADLIASI-----KISKIPIICICNDRYS--QKLKSLVNYC--SDLRFRKPRKQEIAKRLMQIANA--EGLE 552 (790)
Q Consensus 484 L~~~~~~~l~~Ll~~i-----~~s~~pII~I~nd~~~--~~l~~L~sR~--~~I~F~~pt~~ei~~iL~~I~~~--Egi~ 552 (790)
+.......+..|+... ...++.+|+++|+... ...+.+.+|+ ..+.|.+++.+++..+|...+.. ....
T Consensus 141 L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~ 220 (365)
T TIGR02928 141 LVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGV 220 (365)
T ss_pred hccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCC
Confidence 9755555566666541 1244567888886432 2234556666 36899999999999999988752 2334
Q ss_pred CCHHHHHHHHH---HccCCHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHh
Q 003873 553 VNEIALEELAD---RVNGDIRMAINQLQYMSL-----SLSVIKYDDIRQRLLS 597 (790)
Q Consensus 553 i~~~~l~~Ia~---~s~GDiR~aIn~Lq~~~~-----~~~~it~~~v~~~~~~ 597 (790)
+++++++.++. .+.||+|.++++|+.+.. +...|+.+++..++..
T Consensus 221 ~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~ 273 (365)
T TIGR02928 221 LDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEK 273 (365)
T ss_pred CChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 78887776554 557999999999976543 2356888888776544
No 81
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=99.68 E-value=1.4e-16 Score=173.34 Aligned_cols=78 Identities=33% Similarity=0.478 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCC--------CCcchHHHHHHh-----CCcee
Q 003873 202 PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDED--------IAGAKSTKAKEL-----GTPFL 268 (790)
Q Consensus 202 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~--------~g~~K~~kA~~~-----~i~ii 268 (790)
..+|+|++|||||.|++|+|+|++++|+++||+|+++||++|||||+|+. ..++|++||++| ||+||
T Consensus 218 ~~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii 297 (309)
T PRK06195 218 FTAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFL 297 (309)
T ss_pred CccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEe
Confidence 45899999999999999999999999999999999999999999999963 245999999999 99999
Q ss_pred CHHHHHHHHhh
Q 003873 269 TEDGLFDMIRA 279 (790)
Q Consensus 269 ~e~~f~~~l~~ 279 (790)
+|++|++||..
T Consensus 298 ~E~~f~~l~~~ 308 (309)
T PRK06195 298 NEEEFLQKCKE 308 (309)
T ss_pred cHHHHHHHHhh
Confidence 99999999974
No 82
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.67 E-value=1.2e-15 Score=166.24 Aligned_cols=197 Identities=18% Similarity=0.266 Sum_probs=140.7
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcE--------
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA-------- 425 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~i-------- 425 (790)
.|++|+||+.+++.|...+.. +..++++||+||+|+||+++|..+|+.+.+.-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~ 62 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRR 62 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhc
Confidence 478999999999999999987 23579999999999999999999999985431
Q ss_pred --EEEeCCCCC---------Cch--hhhhh------cccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc
Q 003873 426 --IEVNASDSR---------GKA--DAKIS------KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA 486 (790)
Q Consensus 426 --iEinaSd~r---------sk~--~~~i~------~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~ 486 (790)
...|..|.. ++. ..... ........+.++++.......+ ..+.++|+|||++|.|+.
T Consensus 63 ~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p----~~~~~kVvII~~ae~m~~ 138 (314)
T PRK07399 63 RLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPP----LEAPRKVVVIEDAETMNE 138 (314)
T ss_pred ccccCCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCc----ccCCceEEEEEchhhcCH
Confidence 111111110 000 00000 0000112345666655543322 245678999999999999
Q ss_pred cchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc
Q 003873 487 GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN 566 (790)
Q Consensus 487 ~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~ 566 (790)
.+.++|+.+++. .++..+|++|++ ...+++++++||..+.|.+++.+++..+|...+..++.. ..+..|+..++
T Consensus 139 ~aaNaLLK~LEE--Pp~~~fILi~~~-~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~ 212 (314)
T PRK07399 139 AAANALLKTLEE--PGNGTLILIAPS-PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQ 212 (314)
T ss_pred HHHHHHHHHHhC--CCCCeEEEEECC-hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcC
Confidence 888888888874 335557777764 577889999999999999999999999999876443332 23578899999
Q ss_pred CCHHHHHHHHHHH
Q 003873 567 GDIRMAINQLQYM 579 (790)
Q Consensus 567 GDiR~aIn~Lq~~ 579 (790)
|++|.+++.++.+
T Consensus 213 Gs~~~al~~l~~~ 225 (314)
T PRK07399 213 GSPGAAIANIEQL 225 (314)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988754
No 83
>PRK05642 DNA replication initiation factor; Validated
Probab=99.67 E-value=2.2e-15 Score=157.93 Aligned_cols=173 Identities=16% Similarity=0.199 Sum_probs=130.4
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK 473 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~ 473 (790)
.+.++|+||+|+|||+|++++|+++ +..++++++.+... ....++... ...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~----------------~~~~~~~~~----------~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD----------------RGPELLDNL----------EQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh----------------hhHHHHHhh----------hhC
Confidence 4789999999999999999999765 66777777653210 011222211 112
Q ss_pred eEEEEecCCCCCcc--chhHHHHHHHHhhcCCCcEEEEecccc---hhhhhhccccc---cccccCCCCHHHHHHHHHHH
Q 003873 474 TVLIMDEVDGMSAG--DRGGIADLIASIKISKIPIICICNDRY---SQKLKSLVNYC---SDLRFRKPRKQEIAKRLMQI 545 (790)
Q Consensus 474 ~VLIIDEiD~L~~~--~~~~l~~Ll~~i~~s~~pII~I~nd~~---~~~l~~L~sR~---~~I~F~~pt~~ei~~iL~~I 545 (790)
.+|+|||++.+... .+..+..+++.+.....++|++++... ...++.|++|+ ..+.+.+|+.+++..+|+..
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 48999999988653 346678888877777778888776433 22347889997 78999999999999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH---hc-CCCCCHHHHHHHH
Q 003873 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS---LS-LSVIKYDDIRQRL 595 (790)
Q Consensus 546 ~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~---~~-~~~it~~~v~~~~ 595 (790)
|...++.+++++++.|++++.+|+|.+++.|+.+. +. +..||...+++.+
T Consensus 179 a~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~~~~L 232 (234)
T PRK05642 179 ASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFLKETL 232 (234)
T ss_pred HHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHh
Confidence 88889999999999999999999999998887653 22 4668877777654
No 84
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1e-15 Score=171.26 Aligned_cols=198 Identities=19% Similarity=0.335 Sum_probs=143.8
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCC
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDS 433 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~ 433 (790)
+|+||-|.+..+.+|...+...... ......+-.+++.+||+||||||||.+|+++|.+++.+++.+++..
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~P--------e~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApe- 258 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHP--------EVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPE- 258 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCc--------hhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchh-
Confidence 5999999999999998887763211 0001223357899999999999999999999999999999999874
Q ss_pred CCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchh--------HHHHHHHHhh---c-
Q 003873 434 RGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG--------GIADLIASIK---I- 501 (790)
Q Consensus 434 rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~--------~l~~Ll~~i~---~- 501 (790)
+..++.|.....|+++|+.+. ...++|+||||||.+.+.... -+..|+..+. .
T Consensus 259 -------ivSGvSGESEkkiRelF~~A~--------~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~ 323 (802)
T KOG0733|consen 259 -------IVSGVSGESEKKIRELFDQAK--------SNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE 323 (802)
T ss_pred -------hhcccCcccHHHHHHHHHHHh--------ccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc
Confidence 334455566678999999976 456799999999999874322 2333333332 1
Q ss_pred --CCCcEEEEecccchhhhhhcccccc----ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHH
Q 003873 502 --SKIPIICICNDRYSQKLKSLVNYCS----DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575 (790)
Q Consensus 502 --s~~pII~I~nd~~~~~l~~L~sR~~----~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~ 575 (790)
..-||++|+.++....+++-++|.. .|.+.-|+..+..++|..+|....+.- +-.+.+||..+.|-+..-+..
T Consensus 324 ~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~A 402 (802)
T KOG0733|consen 324 KTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMA 402 (802)
T ss_pred ccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHH
Confidence 2457888877666666655554432 388999999999999999997555443 234778999998866665555
Q ss_pred H
Q 003873 576 L 576 (790)
Q Consensus 576 L 576 (790)
|
T Consensus 403 L 403 (802)
T KOG0733|consen 403 L 403 (802)
T ss_pred H
Confidence 4
No 85
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=99.67 E-value=8.7e-17 Score=188.98 Aligned_cols=76 Identities=24% Similarity=0.357 Sum_probs=73.5
Q ss_pred CCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHh
Q 003873 202 PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR 278 (790)
Q Consensus 202 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~ 278 (790)
.++|+|+||||||+|+.++|++++++|+++||+|++|||++|||||+|+++| +|++||++|||+||+|++|++||+
T Consensus 591 ~~~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aG-sKl~KA~~LGI~Ii~e~~f~~~l~ 666 (669)
T PRK14350 591 NSFLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAG-LKLKKANNLGIKIMSLFDIKSYVD 666 (669)
T ss_pred CCccCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCC-chHHHHHHcCCEEecHHHHHHHhc
Confidence 4579999999999999999999999999999999999999999999999998 999999999999999999999986
No 86
>PRK09087 hypothetical protein; Validated
Probab=99.67 E-value=2.1e-15 Score=157.09 Aligned_cols=166 Identities=16% Similarity=0.193 Sum_probs=127.3
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLI 477 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLI 477 (790)
+.++|+||+|||||||++++|+..+..+ ++..+. ..+++... ...+|+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~-------------------~~~~~~~~-----------~~~~l~ 92 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEI-------------------GSDAANAA-----------AEGPVL 92 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHc-------------------chHHHHhh-----------hcCeEE
Confidence 5699999999999999999998876543 332211 01111111 013899
Q ss_pred EecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccc---hhhhhhccccc---cccccCCCCHHHHHHHHHHHHHHcCC
Q 003873 478 MDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY---SQKLKSLVNYC---SDLRFRKPRKQEIAKRLMQIANAEGL 551 (790)
Q Consensus 478 IDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~---~~~l~~L~sR~---~~I~F~~pt~~ei~~iL~~I~~~Egi 551 (790)
|||++.+. .++..+..+++.+.....++|++++... ...++.|++|+ ..+.+.+|+.+++..+|++.+...++
T Consensus 93 iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~ 171 (226)
T PRK09087 93 IEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQL 171 (226)
T ss_pred EECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 99999885 4577888899888887888888877432 22357788887 88999999999999999999999999
Q ss_pred CCCHHHHHHHHHHccCCHHHHHHHHHHH---Hhc-CCCCCHHHHHHHHH
Q 003873 552 EVNEIALEELADRVNGDIRMAINQLQYM---SLS-LSVIKYDDIRQRLL 596 (790)
Q Consensus 552 ~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~---~~~-~~~it~~~v~~~~~ 596 (790)
.+++++++.|++++.||+|.++..|..+ +.. +..+|...+++.+.
T Consensus 172 ~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~ 220 (226)
T PRK09087 172 YVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLN 220 (226)
T ss_pred CCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999988755433 333 57788888887664
No 87
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.66 E-value=3.1e-15 Score=171.35 Aligned_cols=184 Identities=14% Similarity=0.222 Sum_probs=132.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh-----CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML-----GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKH 471 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel-----g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~ 471 (790)
.+.++||||+|+|||+|++++++++ +..++++++.+..... ...+.. ..+.++... -.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~----~~~~~~---~~~~~~~~~----------~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF----VNALRN---NTMEEFKEK----------YR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH----HHHHHc---CcHHHHHHH----------Hh
Confidence 4679999999999999999999988 5678888876532211 010100 011222211 01
Q ss_pred CceEEEEecCCCCCccc--hhHHHHHHHHhhcCCCcEEEEecccchh---hhhhccccc---cccccCCCCHHHHHHHHH
Q 003873 472 PKTVLIMDEVDGMSAGD--RGGIADLIASIKISKIPIICICNDRYSQ---KLKSLVNYC---SDLRFRKPRKQEIAKRLM 543 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~--~~~l~~Ll~~i~~s~~pII~I~nd~~~~---~l~~L~sR~---~~I~F~~pt~~ei~~iL~ 543 (790)
...||||||++.+.... +..+..+++.+.....++|++++..... ..+.|++|+ ..+.|.+|+.+++..+|+
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 24599999999987632 4556666666666666777777754322 235677887 579999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH---H-hcCCCCCHHHHHHHHHh
Q 003873 544 QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM---S-LSLSVIKYDDIRQRLLS 597 (790)
Q Consensus 544 ~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~---~-~~~~~it~~~v~~~~~~ 597 (790)
..+...++.+++++++.|++.+.||+|.++..|..+ + ..+..++.+.+++.+..
T Consensus 291 ~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 291 KKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKD 348 (450)
T ss_pred HHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999966666443 3 23567888888887764
No 88
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.64 E-value=1.4e-14 Score=163.02 Aligned_cols=232 Identities=21% Similarity=0.261 Sum_probs=153.3
Q ss_pred hhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML--- 421 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel--- 421 (790)
.+..-|.| +.++|++..+++|..+|..+.. +..+.+++|+||||+|||++++.+++++
T Consensus 22 ~l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~----------------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 22 VLEPDYVP---ENLPHREEQIEELAFALRPALR----------------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred hCCCCCcC---CCCCCHHHHHHHHHHHHHHHhC----------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 34445555 6799999999999999987532 1235679999999999999999999887
Q ss_pred --CCcEEEEeCCCCCCchh--hhhhcccCC----CchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCC-ccchhHH
Q 003873 422 --GFQAIEVNASDSRGKAD--AKISKGIGG----SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS-AGDRGGI 492 (790)
Q Consensus 422 --g~~iiEinaSd~rsk~~--~~i~~~~g~----s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~-~~~~~~l 492 (790)
++.++++|+....+... ..+...+.+ .....+.+++........ ......||+|||+|.+. ......+
T Consensus 83 ~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~viviDE~d~l~~~~~~~~l 159 (394)
T PRK00411 83 AVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD---ERDRVLIVALDDINYLFEKEGNDVL 159 (394)
T ss_pred cCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCHhHhhccCCchHH
Confidence 57899999976554321 111111211 000112222222111100 12345799999999997 3334556
Q ss_pred HHHHHHhh---cCCCcEEEEecccch-hhh-hhccccc--cccccCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH
Q 003873 493 ADLIASIK---ISKIPIICICNDRYS-QKL-KSLVNYC--SDLRFRKPRKQEIAKRLMQIANAE--GLEVNEIALEELAD 563 (790)
Q Consensus 493 ~~Ll~~i~---~s~~pII~I~nd~~~-~~l-~~L~sR~--~~I~F~~pt~~ei~~iL~~I~~~E--gi~i~~~~l~~Ia~ 563 (790)
..++..+. ..++.+|+|+|+... ..+ +.+.+|+ ..+.|.+++.+++..+|+..+... ...+++++++.|++
T Consensus 160 ~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~ 239 (394)
T PRK00411 160 YSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIAD 239 (394)
T ss_pred HHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHH
Confidence 66665443 235568888886432 122 3344444 468999999999999999887543 23589999999988
Q ss_pred Hc---cCCHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHhc
Q 003873 564 RV---NGDIRMAINQLQYMSL-----SLSVIKYDDIRQRLLSS 598 (790)
Q Consensus 564 ~s---~GDiR~aIn~Lq~~~~-----~~~~it~~~v~~~~~~~ 598 (790)
.+ .||+|.++++|..++. +...|+.+++..++...
T Consensus 240 ~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 240 LTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 87 8999999999975432 23568888887766543
No 89
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=99.64 E-value=2.8e-16 Score=185.47 Aligned_cols=79 Identities=38% Similarity=0.645 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 202 PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 202 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
.++|.|++|||||+|..++|++++++|+++||+|++|||++|||||+|+++|+||++||+++||+||+|++|++||.+.
T Consensus 607 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~ll~~~ 685 (689)
T PRK14351 607 GDALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEELLAER 685 (689)
T ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHHHHhc
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999999863
No 90
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.64 E-value=9.1e-15 Score=167.42 Aligned_cols=218 Identities=17% Similarity=0.236 Sum_probs=139.6
Q ss_pred CCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCC
Q 003873 352 PKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431 (790)
Q Consensus 352 P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaS 431 (790)
..+|+||.|.+..++.|......|...... .+...++++||+||||||||++|+++|.+++..++.++++
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~----------~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~ 293 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASN----------YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVG 293 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHh----------cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhH
Confidence 347899999777665555444333221111 1124678999999999999999999999999999999986
Q ss_pred CCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc-----chh----HHHHHHHHhhcC
Q 003873 432 DSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-----DRG----GIADLIASIKIS 502 (790)
Q Consensus 432 d~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~-----~~~----~l~~Ll~~i~~s 502 (790)
...++ .+|. ....+++++..+. ...++||||||+|.++.. +.+ .+..++..+...
T Consensus 294 ~l~~~-------~vGe-se~~l~~~f~~A~--------~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~ 357 (489)
T CHL00195 294 KLFGG-------IVGE-SESRMRQMIRIAE--------ALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK 357 (489)
T ss_pred Hhccc-------ccCh-HHHHHHHHHHHHH--------hcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC
Confidence 53322 2222 2345777776553 245689999999987652 111 233455555544
Q ss_pred CCcEEEEecccchhhh-hhccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHccC----CHHHHH
Q 003873 503 KIPIICICNDRYSQKL-KSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLE-VNEIALEELADRVNG----DIRMAI 573 (790)
Q Consensus 503 ~~pII~I~nd~~~~~l-~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~-i~~~~l~~Ia~~s~G----DiR~aI 573 (790)
..+|++|++.+....+ +.+++ |+. .|.|..|+.++...++...+.+.+.. ..+..++.|++.+.| ||++++
T Consensus 358 ~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv 437 (489)
T CHL00195 358 KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSI 437 (489)
T ss_pred CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHH
Confidence 5565555444344455 44543 553 47889999999999999888765433 334557788887644 777766
Q ss_pred HHHHHHHh-cCCCCCHHHHHHHH
Q 003873 574 NQLQYMSL-SLSVIKYDDIRQRL 595 (790)
Q Consensus 574 n~Lq~~~~-~~~~it~~~v~~~~ 595 (790)
...-..+. ....++.+++..++
T Consensus 438 ~eA~~~A~~~~~~lt~~dl~~a~ 460 (489)
T CHL00195 438 IEAMYIAFYEKREFTTDDILLAL 460 (489)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHH
Confidence 55433333 24556666665544
No 91
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.63 E-value=1.3e-14 Score=164.14 Aligned_cols=185 Identities=14% Similarity=0.202 Sum_probs=131.5
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh-----CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML-----GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKH 471 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel-----g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~ 471 (790)
.+.++||||+|+|||+|++++++++ +..++++++.+.... +...+... .+..+.... .
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~----~~~~~~~~---~~~~~~~~~----------~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND----FVNALRNN---KMEEFKEKY----------R 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH----HHHHHHcC---CHHHHHHHH----------H
Confidence 5679999999999999999999987 577888887643211 10001001 112222111 1
Q ss_pred CceEEEEecCCCCCcc--chhHHHHHHHHhhcCCCcEEEEecccchh---hhhhccccc---cccccCCCCHHHHHHHHH
Q 003873 472 PKTVLIMDEVDGMSAG--DRGGIADLIASIKISKIPIICICNDRYSQ---KLKSLVNYC---SDLRFRKPRKQEIAKRLM 543 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~--~~~~l~~Ll~~i~~s~~pII~I~nd~~~~---~l~~L~sR~---~~I~F~~pt~~ei~~iL~ 543 (790)
...+|||||++.+... .+..+..+++.+.....++|++++..... ..+.|++|+ ..+.|.+|+.+++..+|.
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 1359999999998764 34556667766655667888877743322 225677776 469999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH---H-hcCCCCCHHHHHHHHHhc
Q 003873 544 QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM---S-LSLSVIKYDDIRQRLLSS 598 (790)
Q Consensus 544 ~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~---~-~~~~~it~~~v~~~~~~~ 598 (790)
..+...++.+++++++.|++.+.+|+|.+...|..+ + ..+..+|.+.+++.+...
T Consensus 279 ~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 279 KKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999865555433 3 235678888888776543
No 92
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.63 E-value=1.2e-14 Score=165.52 Aligned_cols=185 Identities=13% Similarity=0.164 Sum_probs=130.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh-----CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML-----GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKH 471 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel-----g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~ 471 (790)
.+.++||||+|+|||+|++++++++ +..++++++.+.... +...+.. ..+.++.... ..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~----~~~~~~~---~~~~~f~~~~---------~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND----LVDSMKE---GKLNEFREKY---------RK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH----HHHHHhc---ccHHHHHHHH---------Hh
Confidence 4679999999999999999999986 467888887643211 1011110 1122222211 11
Q ss_pred CceEEEEecCCCCCcc--chhHHHHHHHHhhcCCCcEEEEecccch---hhhhhcccccc---ccccCCCCHHHHHHHHH
Q 003873 472 PKTVLIMDEVDGMSAG--DRGGIADLIASIKISKIPIICICNDRYS---QKLKSLVNYCS---DLRFRKPRKQEIAKRLM 543 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~--~~~~l~~Ll~~i~~s~~pII~I~nd~~~---~~l~~L~sR~~---~I~F~~pt~~ei~~iL~ 543 (790)
...+|||||++.+.+. .+..+..+++.+.....+||++++.... ...+.+.+|+. .+.|.+|+.+.+..+|+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 3469999999988653 2445666666665556677777763322 23366778865 78999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH----hcCCCCCHHHHHHHHHh
Q 003873 544 QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS----LSLSVIKYDDIRQRLLS 597 (790)
Q Consensus 544 ~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~----~~~~~it~~~v~~~~~~ 597 (790)
..+..+++.+++++++.|++.+.||+|.+...|..+. ..+..+|.+.+++.+..
T Consensus 274 ~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~ 331 (440)
T PRK14088 274 KMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKD 331 (440)
T ss_pred HHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999777774432 23567888888776653
No 93
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.62 E-value=6.5e-15 Score=148.95 Aligned_cols=165 Identities=17% Similarity=0.242 Sum_probs=113.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcE-EEEeCCCCC---------Cchhh-hhhcccCCCchhHHHHHHHHhhhhc
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQA-IEVNASDSR---------GKADA-KISKGIGGSNANSIKELVSNEALSA 464 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~i-iEinaSd~r---------sk~~~-~i~~~~g~s~~~~i~e~l~~a~~~~ 464 (790)
.++.+||+||+|+|||++|+.+++.+.+.- ...++.... ...+. .+.........+.+++++..+....
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 568899999999999999999999986530 000000000 00000 0000001122456776676654332
Q ss_pred cccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHH
Q 003873 465 NMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544 (790)
Q Consensus 465 ~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~ 544 (790)
. ...++||||||+|.|....++.+..+++. ......+|+++++. ...++++++||..+.|.+++.+++..+|..
T Consensus 93 ~----~~~~kviiide~~~l~~~~~~~Ll~~le~-~~~~~~~il~~~~~-~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~ 166 (188)
T TIGR00678 93 Q----ESGRRVVIIEDAERMNEAAANALLKTLEE-PPPNTLFILITPSP-EKLLPTIRSRCQVLPFPPLSEEALLQWLIR 166 (188)
T ss_pred c----cCCeEEEEEechhhhCHHHHHHHHHHhcC-CCCCeEEEEEECCh-HhChHHHHhhcEEeeCCCCCHHHHHHHHHH
Confidence 2 35678999999999998777766666654 22345567777653 566689999999999999999999998876
Q ss_pred HHHHcCCCCCHHHHHHHHHHccCCHHHH
Q 003873 545 IANAEGLEVNEIALEELADRVNGDIRMA 572 (790)
Q Consensus 545 I~~~Egi~i~~~~l~~Ia~~s~GDiR~a 572 (790)
. | +++++++.|++.++||+|.+
T Consensus 167 ~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 167 Q----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred c----C--CCHHHHHHHHHHcCCCcccC
Confidence 5 4 78999999999999999974
No 94
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=2.2e-14 Score=163.24 Aligned_cols=185 Identities=16% Similarity=0.209 Sum_probs=134.5
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHP 472 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~ 472 (790)
..+.++||||+|+|||+|++++++++ +..++++++.+.... +...+.......++.. ...
T Consensus 140 ~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~----~~~~l~~~~~~~f~~~-------------~~~ 202 (445)
T PRK12422 140 PFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH----LVSAIRSGEMQRFRQF-------------YRN 202 (445)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH----HHHHHhcchHHHHHHH-------------ccc
Confidence 35789999999999999999999876 678888876432110 0000000001111111 123
Q ss_pred ceEEEEecCCCCCcc--chhHHHHHHHHhhcCCCcEEEEecccch---hhhhhccccc---cccccCCCCHHHHHHHHHH
Q 003873 473 KTVLIMDEVDGMSAG--DRGGIADLIASIKISKIPIICICNDRYS---QKLKSLVNYC---SDLRFRKPRKQEIAKRLMQ 544 (790)
Q Consensus 473 ~~VLIIDEiD~L~~~--~~~~l~~Ll~~i~~s~~pII~I~nd~~~---~~l~~L~sR~---~~I~F~~pt~~ei~~iL~~ 544 (790)
..||||||++.+... .+..+..+++.+.....+||++++.... ...+.|++|+ ..+.+.+|+.+++..+|++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 469999999998763 3556667776655556788888875332 2336788887 6899999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHh
Q 003873 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL-------SLSVIKYDDIRQRLLS 597 (790)
Q Consensus 545 I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~-------~~~~it~~~v~~~~~~ 597 (790)
.|...++.+++++++.|+....+|+|.+++.|+.++. .+..++.+.+++.+..
T Consensus 283 k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~ 342 (445)
T PRK12422 283 KAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHD 342 (445)
T ss_pred HHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999987741 2456888888777653
No 95
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.61 E-value=1.2e-14 Score=175.46 Aligned_cols=221 Identities=18% Similarity=0.245 Sum_probs=155.8
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML- 421 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel- 421 (790)
...++++.+|..+++++|+++.++.+...|.. ....++||+||||||||++|+.+|+.+
T Consensus 169 ~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~--------------------~~~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 169 TVDLTEKAKNGKIDPLIGREDELERTIQVLCR--------------------RKKNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred hhhHHHHHhcCCCCcccCcHHHHHHHHHHHhc--------------------CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999998888866 234689999999999999999999988
Q ss_pred ---------CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc----
Q 003873 422 ---------GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD---- 488 (790)
Q Consensus 422 ---------g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~---- 488 (790)
++.+++++.+..-.. ....+.....++.++..+. ...+.||||||+|.+....
T Consensus 229 ~~~~p~~l~~~~~~~~~~~~l~a~------~~~~g~~e~~l~~i~~~~~--------~~~~~ILfiDEih~l~~~g~~~~ 294 (731)
T TIGR02639 229 EGKVPENLKNAKIYSLDMGSLLAG------TKYRGDFEERLKAVVSEIE--------KEPNAILFIDEIHTIVGAGATSG 294 (731)
T ss_pred hCCCchhhcCCeEEEecHHHHhhh------ccccchHHHHHHHHHHHHh--------ccCCeEEEEecHHHHhccCCCCC
Confidence 777888875432100 0011122345667776643 1246799999999987521
Q ss_pred --hhHHHHHHHHhhcCCCcEEEEecc-c---chhhhhhccccccccccCCCCHHHHHHHHHHHHHH----cCCCCCHHHH
Q 003873 489 --RGGIADLIASIKISKIPIICICND-R---YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA----EGLEVNEIAL 558 (790)
Q Consensus 489 --~~~l~~Ll~~i~~s~~pII~I~nd-~---~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~----Egi~i~~~~l 558 (790)
......|...+....+.+|.+||. . +....+.|.+||..|.|..|+.+++..+|+.+... .++.++++++
T Consensus 295 ~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al 374 (731)
T TIGR02639 295 GSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEAL 374 (731)
T ss_pred ccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHH
Confidence 111122333344444455555553 1 22344789999999999999999999999987654 3577999999
Q ss_pred HHHHHHccC---C---HHHHHHHHHHHHhc---------CCCCCHHHHHHHHHh
Q 003873 559 EELADRVNG---D---IRMAINQLQYMSLS---------LSVIKYDDIRQRLLS 597 (790)
Q Consensus 559 ~~Ia~~s~G---D---iR~aIn~Lq~~~~~---------~~~it~~~v~~~~~~ 597 (790)
..++..++. | .+.+|.+|..++.. ...|+.+++...+..
T Consensus 375 ~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~ 428 (731)
T TIGR02639 375 EAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAK 428 (731)
T ss_pred HHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHH
Confidence 999988744 3 67789998766541 234777777776644
No 96
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.60 E-value=2e-14 Score=169.76 Aligned_cols=232 Identities=19% Similarity=0.223 Sum_probs=153.0
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh--
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML-- 421 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel-- 421 (790)
.+..+.|||++|++|+|+...++.+...+.. ....+++|+|||||||||+|++++...
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~--------------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~ 201 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVAS--------------------PFPQHIILYGPPGVGKTTAARLALEEAKK 201 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhc--------------------CCCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4577889999999999999988877544432 235689999999999999999998765
Q ss_pred --------CCcEEEEeCCCCCCchhhhhh-cccCCCchhH---HHHHHHHhhhh-c-cccCCCCCceEEEEecCCCCCcc
Q 003873 422 --------GFQAIEVNASDSRGKADAKIS-KGIGGSNANS---IKELVSNEALS-A-NMDRSKHPKTVLIMDEVDGMSAG 487 (790)
Q Consensus 422 --------g~~iiEinaSd~rsk~~~~i~-~~~g~s~~~~---i~e~l~~a~~~-~-~~~~~~~~~~VLIIDEiD~L~~~ 487 (790)
+..++.+++....... ..+. ..++...... .+..+...... . ..........+|||||++.|...
T Consensus 202 ~~~~~~~~~~~fv~i~~~~l~~d~-~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~ 280 (615)
T TIGR02903 202 LKHTPFAEDAPFVEVDGTTLRWDP-REVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL 280 (615)
T ss_pred ccCCcccCCCCeEEEechhccCCH-HHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH
Confidence 3457889886542110 0111 1111111000 11111110000 0 00000123459999999999988
Q ss_pred chhHHHHHHHHhh-------------------------cCCCcEEEEecc--cchhhhhhccccccccccCCCCHHHHHH
Q 003873 488 DRGGIADLIASIK-------------------------ISKIPIICICND--RYSQKLKSLVNYCSDLRFRKPRKQEIAK 540 (790)
Q Consensus 488 ~~~~l~~Ll~~i~-------------------------~s~~pII~I~nd--~~~~~l~~L~sR~~~I~F~~pt~~ei~~ 540 (790)
.+..+..+++.-. .....+|+|+++ ......++|++||..+.|.+++.+++..
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 7887777775311 012235665432 2334457899999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc-------------CCCCCHHHHHHHHHh
Q 003873 541 RLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS-------------LSVIKYDDIRQRLLS 597 (790)
Q Consensus 541 iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~-------------~~~it~~~v~~~~~~ 597 (790)
++.+++.+.++.+++++++.|+..+. +.|.++|.|+.++.. ...|+.+++.+.+..
T Consensus 361 Il~~~a~~~~v~ls~eal~~L~~ys~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 361 IVLNAAEKINVHLAAGVEELIARYTI-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 99999998888899999999988764 889999999655321 114667777765543
No 97
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.60 E-value=2.8e-14 Score=165.28 Aligned_cols=228 Identities=19% Similarity=0.270 Sum_probs=146.4
Q ss_pred hhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
.+.+.....+|+||+|++.++++|+.++..+...... .. .+...++++||+||||||||++|+++|.+++.+
T Consensus 44 ~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~---~~-----~g~~~~~giLL~GppGtGKT~la~alA~~~~~~ 115 (495)
T TIGR01241 44 LLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKF---TK-----LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 115 (495)
T ss_pred cccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHH---Hh-----cCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4455555678999999999999888877643221100 00 112456889999999999999999999999999
Q ss_pred EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-----------hhHHH
Q 003873 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-----------RGGIA 493 (790)
Q Consensus 425 iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-----------~~~l~ 493 (790)
++++++++... ...+ .....++.+|..+. ...++||||||+|.+.... ...+.
T Consensus 116 ~~~i~~~~~~~-------~~~g-~~~~~l~~~f~~a~--------~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~ 179 (495)
T TIGR01241 116 FFSISGSDFVE-------MFVG-VGASRVRDLFEQAK--------KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLN 179 (495)
T ss_pred eeeccHHHHHH-------HHhc-ccHHHHHHHHHHHH--------hcCCCEEEEechhhhhhccccCcCCccHHHHHHHH
Confidence 99998775321 1111 22345777777653 2346799999999986421 12334
Q ss_pred HHHHHhhc--CCCcEEEEecccchhhh-hhccc--cc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc-
Q 003873 494 DLIASIKI--SKIPIICICNDRYSQKL-KSLVN--YC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN- 566 (790)
Q Consensus 494 ~Ll~~i~~--s~~pII~I~nd~~~~~l-~~L~s--R~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~- 566 (790)
.++..+.. ....|++|+.++....+ +.|++ |+ ..|.|..|+.++...+|...+....+. ++..+..|+..+.
T Consensus 180 ~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G 258 (495)
T TIGR01241 180 QLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPG 258 (495)
T ss_pred HHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCC
Confidence 44444421 12234444333344444 44543 33 358899999999999998877654443 3345677887764
Q ss_pred ---CCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHh
Q 003873 567 ---GDIRMAINQLQYMSL--SLSVIKYDDIRQRLLS 597 (790)
Q Consensus 567 ---GDiR~aIn~Lq~~~~--~~~~it~~~v~~~~~~ 597 (790)
+|++.+++.....+. ....|+.+++..++..
T Consensus 259 ~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~ 294 (495)
T TIGR01241 259 FSGADLANLLNEAALLAARKNKTEITMNDIEEAIDR 294 (495)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 577777764433322 3456999998887654
No 98
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.60 E-value=8e-15 Score=165.58 Aligned_cols=227 Identities=19% Similarity=0.259 Sum_probs=145.7
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
..++++++.+.+++||.|.+.++++|..++..+...- .-.+ ..+...++++||+||||||||++|+++|.+++
T Consensus 170 ~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p--~~~~-----~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 170 SVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHP--ELYD-----DIGIKPPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred hhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCH--HHHH-----hcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4678899988999999999999999999998642210 0000 01123568999999999999999999999999
Q ss_pred CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc--------c---hhH
Q 003873 423 FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG--------D---RGG 491 (790)
Q Consensus 423 ~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~--------~---~~~ 491 (790)
..++.+..++..+ .+++. ....++++|..+. ...+.||||||+|.+... . +..
T Consensus 243 ~~fi~V~~seL~~-------k~~Ge-~~~~vr~lF~~A~--------~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ 306 (438)
T PTZ00361 243 ATFLRVVGSELIQ-------KYLGD-GPKLVRELFRVAE--------ENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRT 306 (438)
T ss_pred CCEEEEecchhhh-------hhcch-HHHHHHHHHHHHH--------hCCCcEEeHHHHHHHhccCCCCCCcccHHHHHH
Confidence 9999998765422 12221 2234666665543 235679999999988531 1 123
Q ss_pred HHHHHHHhh----cCCCcEEEEecccchhhh-hhccc--cc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003873 492 IADLIASIK----ISKIPIICICNDRYSQKL-KSLVN--YC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELAD 563 (790)
Q Consensus 492 l~~Ll~~i~----~s~~pII~I~nd~~~~~l-~~L~s--R~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~ 563 (790)
+..++..+. ...+.||+++|. ...+ +.+++ |+ ..|.|..|+..+...+|...+.+..+.- +-.+..++.
T Consensus 307 ll~LL~~Ldg~~~~~~V~VI~ATNr--~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-dvdl~~la~ 383 (438)
T PTZ00361 307 MLELLNQLDGFDSRGDVKVIMATNR--IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-DVDLEEFIM 383 (438)
T ss_pred HHHHHHHHhhhcccCCeEEEEecCC--hHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-CcCHHHHHH
Confidence 444554442 234455555553 3344 44442 43 3589999999999999997776554431 123455554
Q ss_pred Hc----cCCHHHHHHHHHHHHhc--CCCCCHHHHHHHH
Q 003873 564 RV----NGDIRMAINQLQYMSLS--LSVIKYDDIRQRL 595 (790)
Q Consensus 564 ~s----~GDiR~aIn~Lq~~~~~--~~~it~~~v~~~~ 595 (790)
.+ +.|++.++...-+.+.. ...|+.+++..++
T Consensus 384 ~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~ 421 (438)
T PTZ00361 384 AKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAK 421 (438)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Confidence 44 45777766555444433 3467777766543
No 99
>CHL00181 cbbX CbbX; Provisional
Probab=99.59 E-value=6e-14 Score=151.21 Aligned_cols=203 Identities=19% Similarity=0.218 Sum_probs=129.2
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CC----cEEEE
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GF----QAIEV 428 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~----~iiEi 428 (790)
++|+|.+.++++|.+++. |.... ......+. .......++||+||||||||++|+++|+.+ |+ +++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~-~~~~~--~~~~~~g~--~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v 97 (287)
T CHL00181 23 EELVGLAPVKTRIREIAA-LLLID--RLRKNLGL--TSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTV 97 (287)
T ss_pred HhcCCcHHHHHHHHHHHH-HHHHH--HHHHHcCC--CCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEe
Confidence 379999998888877653 21110 00001111 111235679999999999999999999876 22 46777
Q ss_pred eCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc------chhHHHHHHHHhhcC
Q 003873 429 NASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG------DRGGIADLIASIKIS 502 (790)
Q Consensus 429 naSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~------~~~~l~~Ll~~i~~s 502 (790)
+.++. +...+|... ..+.+++..+ .+.||||||++.|... ....+..|+..++..
T Consensus 98 ~~~~l-------~~~~~g~~~-~~~~~~l~~a-----------~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~ 158 (287)
T CHL00181 98 TRDDL-------VGQYIGHTA-PKTKEVLKKA-----------MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ 158 (287)
T ss_pred cHHHH-------HHHHhccch-HHHHHHHHHc-----------cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC
Confidence 75532 222233222 2244455442 2359999999998432 123444555555433
Q ss_pred CC--cEEEEecccc-h---hhhhhcccccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------ccC
Q 003873 503 KI--PIICICNDRY-S---QKLKSLVNYCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR--------VNG 567 (790)
Q Consensus 503 ~~--pII~I~nd~~-~---~~l~~L~sR~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~--------s~G 567 (790)
.. .||++++... . ...+.|++||. .|.|.+++.+++..++..++.+++..++++.+..+... .-|
T Consensus 159 ~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~G 238 (287)
T CHL00181 159 RDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFA 238 (287)
T ss_pred CCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCc
Confidence 33 3333333211 1 11267888876 59999999999999999999999999999887776664 248
Q ss_pred CHHHHHHHHHHHHhc
Q 003873 568 DIRMAINQLQYMSLS 582 (790)
Q Consensus 568 DiR~aIn~Lq~~~~~ 582 (790)
|.|.+.|.++.+...
T Consensus 239 NaR~vrn~ve~~~~~ 253 (287)
T CHL00181 239 NARSVRNALDRARMR 253 (287)
T ss_pred cHHHHHHHHHHHHHH
Confidence 899999999876543
No 100
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=99.58 E-value=2.3e-15 Score=177.86 Aligned_cols=76 Identities=38% Similarity=0.608 Sum_probs=73.3
Q ss_pred CCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhh
Q 003873 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA 279 (790)
Q Consensus 203 ~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~ 279 (790)
..|+|++|||||+|+.++|++++++|+.+||+|++|||++|||||||+++| +|++||++|||+||+|++|++||.+
T Consensus 589 ~~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~g-sK~~kA~~lgI~ii~E~~f~~~l~~ 664 (665)
T PRK07956 589 VDLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAG-SKLAKAQELGIEVLDEEEFLRLLGE 664 (665)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCC-hHHHHHHHcCCeEEcHHHHHHHHhc
Confidence 359999999999999999999999999999999999999999999999998 9999999999999999999999965
No 101
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=6.5e-14 Score=162.17 Aligned_cols=184 Identities=15% Similarity=0.146 Sum_probs=132.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh-----CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML-----GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKH 471 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel-----g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~ 471 (790)
.+.++|||++|+|||+|++++|+++ ++.++++++.+..... +. .+.. ..+..|... -.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el---~~-al~~---~~~~~f~~~----------y~ 376 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF---IN-SIRD---GKGDSFRRR----------YR 376 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH---HH-HHHh---ccHHHHHHH----------hh
Confidence 3569999999999999999999976 5788888876432111 00 0000 011111111 11
Q ss_pred CceEEEEecCCCCCccc--hhHHHHHHHHhhcCCCcEEEEecccch---hhhhhcccc---ccccccCCCCHHHHHHHHH
Q 003873 472 PKTVLIMDEVDGMSAGD--RGGIADLIASIKISKIPIICICNDRYS---QKLKSLVNY---CSDLRFRKPRKQEIAKRLM 543 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~--~~~l~~Ll~~i~~s~~pII~I~nd~~~---~~l~~L~sR---~~~I~F~~pt~~ei~~iL~ 543 (790)
...|||||||+.+.... +..|..+++.+.....+||++++.... ...+.|++| ...+.+.+|+.+.+..+|+
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 24699999999997633 466778888877777888887775322 223557776 4568999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH----hcCCCCCHHHHHHHHHh
Q 003873 544 QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS----LSLSVIKYDDIRQRLLS 597 (790)
Q Consensus 544 ~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~----~~~~~it~~~v~~~~~~ 597 (790)
..+...++.++++++++|+.+..+|+|.+...|..+. ..+..|+.+.++..+..
T Consensus 457 kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~ 514 (617)
T PRK14086 457 KKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRD 514 (617)
T ss_pred HHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999777775432 23566888777766643
No 102
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.57 E-value=3.5e-14 Score=147.35 Aligned_cols=192 Identities=19% Similarity=0.254 Sum_probs=129.7
Q ss_pred CCcccc-C--CHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-----CCcE
Q 003873 354 TPNEIV-G--NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML-----GFQA 425 (790)
Q Consensus 354 sl~dLv-G--~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel-----g~~i 425 (790)
+|+.+| | |+.....++..... .+.....++||||+|+|||+|++++++++ +..+
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~------------------~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v 67 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAEN------------------PGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRV 67 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHS------------------TTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-E
T ss_pred ccccCCcCCcHHHHHHHHHHHHhc------------------CCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccc
Confidence 678875 4 55555555544433 01235679999999999999999999875 5778
Q ss_pred EEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--hhHHHHHHHHhhcCC
Q 003873 426 IEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--RGGIADLIASIKISK 503 (790)
Q Consensus 426 iEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--~~~l~~Ll~~i~~s~ 503 (790)
+++++.+........+. . ..+.++.... ....+|+||+++.+.... +..+..+++.+....
T Consensus 68 ~y~~~~~f~~~~~~~~~----~---~~~~~~~~~~----------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~ 130 (219)
T PF00308_consen 68 VYLSAEEFIREFADALR----D---GEIEEFKDRL----------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESG 130 (219)
T ss_dssp EEEEHHHHHHHHHHHHH----T---TSHHHHHHHH----------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTT
T ss_pred eeecHHHHHHHHHHHHH----c---ccchhhhhhh----------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhC
Confidence 88887643211100000 0 1122222221 234699999999998743 678888888888888
Q ss_pred CcEEEEecccchh---hhhhcccc---ccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 003873 504 IPIICICNDRYSQ---KLKSLVNY---CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577 (790)
Q Consensus 504 ~pII~I~nd~~~~---~l~~L~sR---~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq 577 (790)
.++|++++..... ..+.|.+| +..+.+.+|+.+....+|++.+...++.+++++++.|++...+|+|.+...|+
T Consensus 131 k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 131 KQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp SEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 8999988754332 23556666 56799999999999999999999999999999999999999999999888886
Q ss_pred HHH
Q 003873 578 YMS 580 (790)
Q Consensus 578 ~~~ 580 (790)
.+.
T Consensus 211 ~l~ 213 (219)
T PF00308_consen 211 RLD 213 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 103
>CHL00176 ftsH cell division protein; Validated
Probab=99.57 E-value=7e-14 Score=164.82 Aligned_cols=219 Identities=18% Similarity=0.265 Sum_probs=143.2
Q ss_pred CCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCC
Q 003873 353 KTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432 (790)
Q Consensus 353 ~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd 432 (790)
.+|+|++|.++..++|...+..+..... . ...+...++++||+||||||||++|+++|.+++.+++++++++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~---~-----~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~ 251 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPER---F-----TAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSE 251 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHH---H-----hhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHH
Confidence 5799999999888888877765432211 0 0112245789999999999999999999999999999998876
Q ss_pred CCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc-----------chhHHHHHHHHhhc
Q 003873 433 SRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-----------DRGGIADLIASIKI 501 (790)
Q Consensus 433 ~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~-----------~~~~l~~Ll~~i~~ 501 (790)
.... ..+ .....+++++..+. ...++||||||+|.+... .+..+..|+..+..
T Consensus 252 f~~~-------~~g-~~~~~vr~lF~~A~--------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg 315 (638)
T CHL00176 252 FVEM-------FVG-VGAARVRDLFKKAK--------ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG 315 (638)
T ss_pred HHHH-------hhh-hhHHHHHHHHHHHh--------cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc
Confidence 4221 111 12345667776653 345689999999988531 12345555554431
Q ss_pred --CCCcEEEEecccchhhh-hhccc--cc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC----CHHH
Q 003873 502 --SKIPIICICNDRYSQKL-KSLVN--YC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG----DIRM 571 (790)
Q Consensus 502 --s~~pII~I~nd~~~~~l-~~L~s--R~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G----DiR~ 571 (790)
.+..|++|+..+....+ +.|++ |+ ..+.|..|+.++...+|+..+....+ .++..+..|+..+.| |++.
T Consensus 316 ~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~ 394 (638)
T CHL00176 316 FKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLAN 394 (638)
T ss_pred ccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHH
Confidence 22233333332233344 44553 33 45889999999999999988876333 345668889998877 6776
Q ss_pred HHHHHHHHH--hcCCCCCHHHHHHHHH
Q 003873 572 AINQLQYMS--LSLSVIKYDDIRQRLL 596 (790)
Q Consensus 572 aIn~Lq~~~--~~~~~it~~~v~~~~~ 596 (790)
++|..-..+ .....++.+++..++.
T Consensus 395 lvneAal~a~r~~~~~It~~dl~~Ai~ 421 (638)
T CHL00176 395 LLNEAAILTARRKKATITMKEIDTAID 421 (638)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 666543332 2345688888877664
No 104
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.57 E-value=7.5e-14 Score=150.40 Aligned_cols=200 Identities=20% Similarity=0.247 Sum_probs=131.8
Q ss_pred cccCCHHHHHHHHHHHHh--hhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CC----cEEE
Q 003873 357 EIVGNQQLVKQLHTWLAH--WNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GF----QAIE 427 (790)
Q Consensus 357 dLvG~e~~i~~L~~wL~~--w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~----~iiE 427 (790)
+|+|.+.++++|..+... +.......|.. ......++||+||||||||++|+++|+.+ |+ .+++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~-------~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~ 95 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLA-------SAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS 95 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCC-------cCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE
Confidence 689998888887765442 11111111111 01234589999999999999999999877 22 5777
Q ss_pred EeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc------chhHHHHHHHHhhc
Q 003873 428 VNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG------DRGGIADLIASIKI 501 (790)
Q Consensus 428 inaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~------~~~~l~~Ll~~i~~ 501 (790)
+++++. +...+|.+ ...+.+++..+ ...||||||++.|... ....+..|++.++.
T Consensus 96 v~~~~l-------~~~~~g~~-~~~~~~~~~~a-----------~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~ 156 (284)
T TIGR02880 96 VTRDDL-------VGQYIGHT-APKTKEILKRA-----------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN 156 (284)
T ss_pred ecHHHH-------hHhhcccc-hHHHHHHHHHc-----------cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhc
Confidence 776432 22223322 23355555542 2359999999988421 12334455555554
Q ss_pred CCCcEEEEec--cc----chhhhhhcccccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------cc
Q 003873 502 SKIPIICICN--DR----YSQKLKSLVNYCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR--------VN 566 (790)
Q Consensus 502 s~~pII~I~n--d~----~~~~l~~L~sR~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~--------s~ 566 (790)
....+++|+. .. +....+.|.+|+. .|.|++++.+++..++...+.+.+..++++++..+... ..
T Consensus 157 ~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~ 236 (284)
T TIGR02880 157 QRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHF 236 (284)
T ss_pred CCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCC
Confidence 4333333333 21 1112367888875 69999999999999999999999999999999888775 25
Q ss_pred CCHHHHHHHHHHHHhc
Q 003873 567 GDIRMAINQLQYMSLS 582 (790)
Q Consensus 567 GDiR~aIn~Lq~~~~~ 582 (790)
||+|.+.|.++.+...
T Consensus 237 GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 237 ANARSIRNAIDRARLR 252 (284)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 9999999999887654
No 105
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=1.6e-13 Score=156.51 Aligned_cols=186 Identities=13% Similarity=0.163 Sum_probs=132.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh-----CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML-----GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKH 471 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel-----g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~ 471 (790)
.+.++|||++|+|||+|++++++++ ++.++++++.+..... ...++. ....+.++... -.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~----~~~l~~-~~~~~~~~~~~----------~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKA----VDILQK-THKEIEQFKNE----------IC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH----HHHHHH-hhhHHHHHHHH----------hc
Confidence 4679999999999999999999865 5778888876432111 100000 00112222211 12
Q ss_pred CceEEEEecCCCCCc--cchhHHHHHHHHhhcCCCcEEEEecccchh---hhhhccccc---cccccCCCCHHHHHHHHH
Q 003873 472 PKTVLIMDEVDGMSA--GDRGGIADLIASIKISKIPIICICNDRYSQ---KLKSLVNYC---SDLRFRKPRKQEIAKRLM 543 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~--~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~---~l~~L~sR~---~~I~F~~pt~~ei~~iL~ 543 (790)
...+|||||++.+.. ..+..+..+++.+.....+||++++..... ..+.|.+|+ ..+.+.+|+.+++..+|+
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 346999999999875 345678888887777777888877743221 124566664 478999999999999999
Q ss_pred HHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHH---hc---CCCCCHHHHHHHHHh
Q 003873 544 QIANAEGL--EVNEIALEELADRVNGDIRMAINQLQYMS---LS---LSVIKYDDIRQRLLS 597 (790)
Q Consensus 544 ~I~~~Egi--~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~---~~---~~~it~~~v~~~~~~ 597 (790)
+.+...|+ .+++++++.|++.+.||+|.++++|..+. .. +..|+.+.+++.+..
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhh
Confidence 99998885 69999999999999999999999885543 22 257888888877654
No 106
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=8e-14 Score=153.30 Aligned_cols=191 Identities=20% Similarity=0.283 Sum_probs=129.6
Q ss_pred CCccccC-CHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcE-EEEeCC
Q 003873 354 TPNEIVG-NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA-IEVNAS 431 (790)
Q Consensus 354 sl~dLvG-~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~i-iEinaS 431 (790)
.++.|+| |+.+++.|+..+.. +..++++||+||+|+||+++|+.+|+.+.+.- ....+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~c 63 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPC 63 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC
Confidence 3677899 89999999888876 23578999999999999999999999986531 000010
Q ss_pred CCCCchhhhhhcc----------cC-CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh
Q 003873 432 DSRGKADAKISKG----------IG-GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK 500 (790)
Q Consensus 432 d~rsk~~~~i~~~----------~g-~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~ 500 (790)
..+. ....+..+ -+ ....+.+++++....... ..+.++|+||||+|.|+....+.|+..++. .
T Consensus 64 g~C~-~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~----~~~~~kvviI~~a~~~~~~a~NaLLK~LEE-P 137 (329)
T PRK08058 64 GTCT-NCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSG----VESNKKVYIIEHADKMTASAANSLLKFLEE-P 137 (329)
T ss_pred CcCH-HHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCC----cccCceEEEeehHhhhCHHHHHHHHHHhcC-C
Confidence 0000 00001000 01 123456777776544322 235678999999999998877877777763 1
Q ss_pred cCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 003873 501 ISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577 (790)
Q Consensus 501 ~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq 577 (790)
...+-+|+++++ ....++++++||..+.|.+++.+++..+|. .+| ++++....++.. .|+++.|+.+++
T Consensus 138 p~~~~~Il~t~~-~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~-~g~~~~A~~l~~ 206 (329)
T PRK08058 138 SGGTTAILLTEN-KHQILPTILSRCQVVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGL-TNSVEEALALSE 206 (329)
T ss_pred CCCceEEEEeCC-hHhCcHHHHhhceeeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHH-cCCHHHHHHHhc
Confidence 234445666654 557789999999999999999999977775 345 556666666666 478998887663
No 107
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=8e-14 Score=154.15 Aligned_cols=217 Identities=16% Similarity=0.258 Sum_probs=143.9
Q ss_pred hcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 349 KYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 349 KY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
+..-.+|+|+.|.++..++|.+.++-.+..-. ....++..++.+||+||||+|||.||+++|-+.|.++++.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~k--------ftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEFLKDPTK--------FTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHHhcCcHH--------hhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 44456899999998887777766654221100 0123456789999999999999999999999999999998
Q ss_pred eCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc----c----hhHHHHHHHHhh
Q 003873 429 NASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG----D----RGGIADLIASIK 500 (790)
Q Consensus 429 naSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~----~----~~~l~~Ll~~i~ 500 (790)
..|.. ...+-+.....++++|..+. ...++||||||+|.+... + ...++.|+-.+.
T Consensus 369 sGSEF--------dEm~VGvGArRVRdLF~aAk--------~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmD 432 (752)
T KOG0734|consen 369 SGSEF--------DEMFVGVGARRVRDLFAAAK--------ARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMD 432 (752)
T ss_pred cccch--------hhhhhcccHHHHHHHHHHHH--------hcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhc
Confidence 77753 23333444678999998876 456899999999998752 1 134455554443
Q ss_pred --cCCCcEEEEecccchhhhhhccc---ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHccC----CH
Q 003873 501 --ISKIPIICICNDRYSQKLKSLVN---YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEI-ALEELADRVNG----DI 569 (790)
Q Consensus 501 --~s~~pII~I~nd~~~~~l~~L~s---R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~-~l~~Ia~~s~G----Di 569 (790)
..+-+||+|+.+++...|+.-+- |+. .|..+.|+..-..+||...+.+ +..+++ .+..||+.+.| |+
T Consensus 433 GF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdL 510 (752)
T KOG0734|consen 433 GFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADL 510 (752)
T ss_pred CcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHH
Confidence 23447888877777777754443 333 4778888888888888877643 333322 24567776654 66
Q ss_pred HHHHHHHHHHHhc--CCCCCHHHH
Q 003873 570 RMAINQLQYMSLS--LSVIKYDDI 591 (790)
Q Consensus 570 R~aIn~Lq~~~~~--~~~it~~~v 591 (790)
-.++|..-..+.. ...++..++
T Consensus 511 aNlVNqAAlkAa~dga~~VtM~~L 534 (752)
T KOG0734|consen 511 ANLVNQAALKAAVDGAEMVTMKHL 534 (752)
T ss_pred HHHHHHHHHHHHhcCcccccHHHH
Confidence 6666554333322 344555544
No 108
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.2e-13 Score=157.26 Aligned_cols=208 Identities=21% Similarity=0.280 Sum_probs=137.3
Q ss_pred hhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 348 EKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 348 eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
...-..+++||-|.++++++|++.+. |.-.+...- . ..+..+++.||||||||||||++|+++|++.+++++.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~-~p~~~pe~F-~-----r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls 498 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVE-WPLKHPEKF-A-----RFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS 498 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHh-hhhhchHHH-H-----HhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeee
Confidence 34455688999999999999987665 333221110 0 1123578999999999999999999999999999999
Q ss_pred EeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--------hhHHHHHHHHh
Q 003873 428 VNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--------RGGIADLIASI 499 (790)
Q Consensus 428 inaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--------~~~l~~Ll~~i 499 (790)
+.... .+..++|.+. ..++++|+.+. +..++|||+||+|.+.... ...+..|+..+
T Consensus 499 vkgpE-------L~sk~vGeSE-r~ir~iF~kAR--------~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEm 562 (693)
T KOG0730|consen 499 VKGPE-------LFSKYVGESE-RAIREVFRKAR--------QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEM 562 (693)
T ss_pred ccCHH-------HHHHhcCchH-HHHHHHHHHHh--------hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHc
Confidence 97764 3444455443 46888998876 3456899999999987521 12344455444
Q ss_pred h---cCCCcEEEEecccchhhhhhccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHccC-CHHH
Q 003873 500 K---ISKIPIICICNDRYSQKLKSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEI-ALEELADRVNG-DIRM 571 (790)
Q Consensus 500 ~---~s~~pII~I~nd~~~~~l~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~-~l~~Ia~~s~G-DiR~ 571 (790)
. ..+.-+|+.++++...+-+.|++ |+. .|.+..|+.+....+|+..++ ++.++++ .+++|++.+.| .-+.
T Consensus 563 DG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k--kmp~~~~vdl~~La~~T~g~SGAe 640 (693)
T KOG0730|consen 563 DGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK--KMPFSEDVDLEELAQATEGYSGAE 640 (693)
T ss_pred ccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh--cCCCCccccHHHHHHHhccCChHH
Confidence 3 33333444344444444466665 544 488888999988899887664 4556555 68889987755 2233
Q ss_pred HHHHHHHHH
Q 003873 572 AINQLQYMS 580 (790)
Q Consensus 572 aIn~Lq~~~ 580 (790)
+.+.+|.++
T Consensus 641 l~~lCq~A~ 649 (693)
T KOG0730|consen 641 IVAVCQEAA 649 (693)
T ss_pred HHHHHHHHH
Confidence 333444443
No 109
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.55 E-value=1.7e-13 Score=153.85 Aligned_cols=222 Identities=18% Similarity=0.249 Sum_probs=141.1
Q ss_pred hcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 349 KYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 349 KY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
..-..+++||.|.+.++++|+.++..+..+. ..... .+-..++++||+||||||||++|+++|.+++..++.+
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~--~~~~~-----~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCP--ELYEQ-----IGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCH--HHHHh-----cCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 3344589999999999999999988643210 00001 1124578999999999999999999999999999998
Q ss_pred eCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc--------c---hhHHHHHHH
Q 003873 429 NASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG--------D---RGGIADLIA 497 (790)
Q Consensus 429 naSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~--------~---~~~l~~Ll~ 497 (790)
.+++. +..+++. ....+++++..+. ...+.||||||+|.+... + +..+..++.
T Consensus 211 ~~s~l-------~~k~~ge-~~~~lr~lf~~A~--------~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~ 274 (398)
T PTZ00454 211 VGSEF-------VQKYLGE-GPRMVRDVFRLAR--------ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLN 274 (398)
T ss_pred ehHHH-------HHHhcch-hHHHHHHHHHHHH--------hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHH
Confidence 76543 2222222 2234666665543 245689999999988531 1 123445555
Q ss_pred Hhhc----CCCcEEEEecccchhhh-hhccc--cc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc---
Q 003873 498 SIKI----SKIPIICICNDRYSQKL-KSLVN--YC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN--- 566 (790)
Q Consensus 498 ~i~~----s~~pII~I~nd~~~~~l-~~L~s--R~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~--- 566 (790)
.+.. ..+.||+++| ....+ +.+++ |+ ..|.|..|+.++...+++.++.+.++.- +-.+..|+..+.
T Consensus 275 ~ld~~~~~~~v~VI~aTN--~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-dvd~~~la~~t~g~s 351 (398)
T PTZ00454 275 QMDGFDQTTNVKVIMATN--RADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-EVDLEDFVSRPEKIS 351 (398)
T ss_pred HhhccCCCCCEEEEEecC--CchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-ccCHHHHHHHcCCCC
Confidence 4432 2334555555 33444 44543 43 3489999999999999998877655542 223566777654
Q ss_pred -CCHHHHHHHHHHHHhc--CCCCCHHHHHHHHH
Q 003873 567 -GDIRMAINQLQYMSLS--LSVIKYDDIRQRLL 596 (790)
Q Consensus 567 -GDiR~aIn~Lq~~~~~--~~~it~~~v~~~~~ 596 (790)
.||..+++...+.+.. ...|+.+++..++.
T Consensus 352 gaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~ 384 (398)
T PTZ00454 352 AADIAAICQEAGMQAVRKNRYVILPKDFEKGYK 384 (398)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 4666665555444433 34577777666543
No 110
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.55 E-value=7e-14 Score=157.09 Aligned_cols=219 Identities=21% Similarity=0.270 Sum_probs=138.9
Q ss_pred CCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCC
Q 003873 352 PKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431 (790)
Q Consensus 352 P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaS 431 (790)
..+++||.|.+.++++|..++......- .... ..+...++++||+||||||||++|+++|++++..++.++++
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~--~~~~-----~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~ 199 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKP--ELFE-----EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 199 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCH--HHHH-----hcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehH
Confidence 3478899999999999999886522110 0000 11124578999999999999999999999999999999887
Q ss_pred CCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc--------c---hhHHHHHHHHhh
Q 003873 432 DSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG--------D---RGGIADLIASIK 500 (790)
Q Consensus 432 d~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~--------~---~~~l~~Ll~~i~ 500 (790)
+... .++|. ....++.++..+. ...+.||||||+|.+... + +..+..++..+.
T Consensus 200 ~l~~-------~~~g~-~~~~i~~~f~~a~--------~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld 263 (389)
T PRK03992 200 ELVQ-------KFIGE-GARLVRELFELAR--------EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD 263 (389)
T ss_pred HHhH-------hhccc-hHHHHHHHHHHHH--------hcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcc
Confidence 5422 12221 2234556665543 234679999999998531 1 123444444333
Q ss_pred c----CCCcEEEEecccchhhh-hhccc--cc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc----CC
Q 003873 501 I----SKIPIICICNDRYSQKL-KSLVN--YC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN----GD 568 (790)
Q Consensus 501 ~----s~~pII~I~nd~~~~~l-~~L~s--R~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~----GD 568 (790)
. .++.||+++|. ...+ +.+++ |+ ..|.|.+|+.++..++|...+....+.- ...+..|+..+. +|
T Consensus 264 ~~~~~~~v~VI~aTn~--~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~~~~la~~t~g~sgad 340 (389)
T PRK03992 264 GFDPRGNVKIIAATNR--IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVDLEELAELTEGASGAD 340 (389)
T ss_pred ccCCCCCEEEEEecCC--hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCCHHHHHHHcCCCCHHH
Confidence 1 23445556654 2334 44543 44 3589999999999999998775443321 133666777654 47
Q ss_pred HHHHHHHHHHHHhc--CCCCCHHHHHHHHH
Q 003873 569 IRMAINQLQYMSLS--LSVIKYDDIRQRLL 596 (790)
Q Consensus 569 iR~aIn~Lq~~~~~--~~~it~~~v~~~~~ 596 (790)
++.+++..-+.+.. ...|+.+++.+++.
T Consensus 341 l~~l~~eA~~~a~~~~~~~i~~~d~~~A~~ 370 (389)
T PRK03992 341 LKAICTEAGMFAIRDDRTEVTMEDFLKAIE 370 (389)
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 77776665554443 34577777766544
No 111
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.54 E-value=8.7e-14 Score=169.53 Aligned_cols=206 Identities=15% Similarity=0.233 Sum_probs=144.7
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
...++++.+|..+++++|+++.++.+..+|.. ....++||+||||||||++|+.+|+.+.
T Consensus 174 ~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r--------------------~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 174 TTDLTAQAREGKIDPVLGRDDEIRQMIDILLR--------------------RRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred hhhHHHHhcCCCCCcccCCHHHHHHHHHHHhc--------------------CCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 34678888999999999999999999888876 2346899999999999999999999872
Q ss_pred ----------CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc-----c
Q 003873 423 ----------FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA-----G 487 (790)
Q Consensus 423 ----------~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~-----~ 487 (790)
.+++.++.+..... ....+.....++.++..... ...+.||||||+|.|.+ +
T Consensus 234 ~~~v~~~l~~~~i~~l~l~~l~ag------~~~~ge~e~~lk~ii~e~~~-------~~~~~ILfIDEih~l~~~g~~~~ 300 (852)
T TIGR03345 234 AGDVPPALRNVRLLSLDLGLLQAG------ASVKGEFENRLKSVIDEVKA-------SPQPIILFIDEAHTLIGAGGQAG 300 (852)
T ss_pred hCCCCccccCCeEEEeehhhhhcc------cccchHHHHHHHHHHHHHHh-------cCCCeEEEEeChHHhccCCCccc
Confidence 44555554421100 00011112456667766431 13467999999999975 1
Q ss_pred chhHHHHHHHHhhcCCCcEEEEecc----cchhhhhhccccccccccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHH
Q 003873 488 DRGGIADLIASIKISKIPIICICND----RYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA----EGLEVNEIALE 559 (790)
Q Consensus 488 ~~~~l~~Ll~~i~~s~~pII~I~nd----~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~----Egi~i~~~~l~ 559 (790)
....-..|...+....+.+|..||. .+..+.+.|.+||..|.|.+|+.++...+|..+... .++.++++++.
T Consensus 301 ~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~ 380 (852)
T TIGR03345 301 QGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVV 380 (852)
T ss_pred cccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHH
Confidence 1222122334445555666666653 233345789999999999999999999998766543 36889999999
Q ss_pred HHHHHccCC------HHHHHHHHHHHHh
Q 003873 560 ELADRVNGD------IRMAINQLQYMSL 581 (790)
Q Consensus 560 ~Ia~~s~GD------iR~aIn~Lq~~~~ 581 (790)
.++..+.+- +..||.+|..+|.
T Consensus 381 ~~~~ls~ryi~~r~LPDKAIdlldea~a 408 (852)
T TIGR03345 381 AAVELSHRYIPGRQLPDKAVSLLDTACA 408 (852)
T ss_pred HHHHHcccccccccCccHHHHHHHHHHH
Confidence 999988653 4568888876553
No 112
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=9.7e-14 Score=152.10 Aligned_cols=173 Identities=19% Similarity=0.214 Sum_probs=120.8
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCcEE-EEeCCCCCCch---------hh-hhhccc--CCCchhHHHHHHHHhh
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI-EVNASDSRGKA---------DA-KISKGI--GGSNANSIKELVSNEA 461 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ii-EinaSd~rsk~---------~~-~i~~~~--g~s~~~~i~e~l~~a~ 461 (790)
..++++||+||+|+|||++|+.+|+.+.|.-- ...+...+..+ +. .+...- .....+.++++.....
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999999976421 11111111000 00 010000 1124577888777665
Q ss_pred hhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHH
Q 003873 462 LSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541 (790)
Q Consensus 462 ~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~i 541 (790)
.... .+.++|+||||+|.|+....+.+...++. ....+.+|++|++ ....+++++|||..+.|.+|+.+++...
T Consensus 100 ~~~~----~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-Pp~~~~fiL~t~~-~~~ll~TI~SRc~~~~~~~~~~~~~~~~ 173 (328)
T PRK05707 100 QTAQ----LGGRKVVLIEPAEAMNRNAANALLKSLEE-PSGDTVLLLISHQ-PSRLLPTIKSRCQQQACPLPSNEESLQW 173 (328)
T ss_pred hccc----cCCCeEEEECChhhCCHHHHHHHHHHHhC-CCCCeEEEEEECC-hhhCcHHHHhhceeeeCCCcCHHHHHHH
Confidence 4332 45678999999999999888888888774 2234555555554 5668899999999999999999999998
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 003873 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577 (790)
Q Consensus 542 L~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq 577 (790)
|...+ -..+++.+..++..++|.+..|+.+++
T Consensus 174 L~~~~----~~~~~~~~~~~l~la~Gsp~~A~~l~~ 205 (328)
T PRK05707 174 LQQAL----PESDERERIELLTLAGGSPLRALQLHE 205 (328)
T ss_pred HHHhc----ccCChHHHHHHHHHcCCCHHHHHHHHC
Confidence 87542 134566777888999999999887753
No 113
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=99.53 E-value=1.1e-14 Score=172.15 Aligned_cols=71 Identities=45% Similarity=0.767 Sum_probs=68.5
Q ss_pred CCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHH
Q 003873 202 PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGL 273 (790)
Q Consensus 202 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f 273 (790)
.++|+|++|||||+|+.++|++++++|+++||+|++|||++|||||+|+++| +|++||++|||+||+|++|
T Consensus 582 ~~~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~g-sKl~kA~~lgi~ii~E~~~ 652 (652)
T TIGR00575 582 GSPLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVSKKTDYVIAGEKAG-SKLAKAQELGIPIINEEEL 652 (652)
T ss_pred CCCccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCC-hHHHHHHHcCCcEechhhC
Confidence 4579999999999999999999999999999999999999999999999998 7999999999999999987
No 114
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=6.2e-13 Score=147.56 Aligned_cols=223 Identities=23% Similarity=0.311 Sum_probs=151.5
Q ss_pred hhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC----
Q 003873 347 TEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG---- 422 (790)
Q Consensus 347 ~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg---- 422 (790)
-+-|-|.. |.+.+..+++|...|..+... ..+.+++|+||||||||++++.+++++.
T Consensus 11 ~~~~iP~~---l~~Re~ei~~l~~~l~~~~~~----------------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~ 71 (366)
T COG1474 11 LEDYIPEE---LPHREEEINQLASFLAPALRG----------------ERPSNIIIYGPTGTGKTATVKFVMEELEESSA 71 (366)
T ss_pred CCCCCccc---ccccHHHHHHHHHHHHHHhcC----------------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhc
Confidence 34466644 999999999999998885431 3456799999999999999999999993
Q ss_pred -CcEEEEeCCCCCCchh--hhhhcccC------CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHH
Q 003873 423 -FQAIEVNASDSRGKAD--AKISKGIG------GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIA 493 (790)
Q Consensus 423 -~~iiEinaSd~rsk~~--~~i~~~~g------~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~ 493 (790)
..++++||-..++... ..+...++ .+....+..+.+... ......||++||+|.|...+...+.
T Consensus 72 ~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~-------~~~~~~IvvLDEid~L~~~~~~~LY 144 (366)
T COG1474 72 NVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLS-------KKGKTVIVILDEVDALVDKDGEVLY 144 (366)
T ss_pred cCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHH-------hcCCeEEEEEcchhhhccccchHHH
Confidence 3489999987665432 12222121 111222222222211 1345679999999999987777777
Q ss_pred HHHHHhhcCC--CcEEEEecccc-hhhh-hhcccccc--ccccCCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHH-
Q 003873 494 DLIASIKISK--IPIICICNDRY-SQKL-KSLVNYCS--DLRFRKPRKQEIAKRLMQIANA--EGLEVNEIALEELADR- 564 (790)
Q Consensus 494 ~Ll~~i~~s~--~pII~I~nd~~-~~~l-~~L~sR~~--~I~F~~pt~~ei~~iL~~I~~~--Egi~i~~~~l~~Ia~~- 564 (790)
.|+....... +-+|.+.|+.. ...+ +.+.++.. .|.|+|++.+|+..+|...+.. ..-.+++.+++.++..
T Consensus 145 ~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~ 224 (366)
T COG1474 145 SLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALV 224 (366)
T ss_pred HHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 7776544333 34666777642 2222 33444422 3889999999999999987753 2345788888887754
Q ss_pred --ccCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Q 003873 565 --VNGDIRMAINQLQYMSLS-----LSVIKYDDIRQRL 595 (790)
Q Consensus 565 --s~GDiR~aIn~Lq~~~~~-----~~~it~~~v~~~~ 595 (790)
.+||.|.+|.+|..++.. ...++.+++..+.
T Consensus 225 a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~ 262 (366)
T COG1474 225 AAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQ 262 (366)
T ss_pred HHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Confidence 478999999999877643 5678888887753
No 115
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.52 E-value=1.8e-13 Score=148.45 Aligned_cols=159 Identities=19% Similarity=0.319 Sum_probs=113.0
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCce
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~ 474 (790)
..++.++||||||||||.+|+++|+++|+.++.+++++..++ ++ +.....+++++..+.... ..+..++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk-------~v-GEsEk~IR~~F~~A~~~a---~~~~aPc 214 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE-------NA-GEPGKLIRQRYREAADII---KKKGKMS 214 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC-------cC-CcHHHHHHHHHHHHHHHh---hccCCCe
Confidence 468999999999999999999999999999999998854332 23 334456888888765321 1145679
Q ss_pred EEEEecCCCCCcc---chhH------HHHHHHHhh----------------cCCCcEEEEecccchhhhhhccc--cccc
Q 003873 475 VLIMDEVDGMSAG---DRGG------IADLIASIK----------------ISKIPIICICNDRYSQKLKSLVN--YCSD 527 (790)
Q Consensus 475 VLIIDEiD~L~~~---~~~~------l~~Ll~~i~----------------~s~~pII~I~nd~~~~~l~~L~s--R~~~ 527 (790)
||||||||.+.+. .+.. ...|+..+. ...++||+++|+ ...+-++|++ |+..
T Consensus 215 VLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNr-pd~LDpALlRpGRfDk 293 (413)
T PLN00020 215 CLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGND-FSTLYAPLIRDGRMEK 293 (413)
T ss_pred EEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCC-cccCCHhHcCCCCCCc
Confidence 9999999988762 1111 134444321 344667777775 3444466665 6655
Q ss_pred cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCC
Q 003873 528 LRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGD 568 (790)
Q Consensus 528 I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GD 568 (790)
+ |..|+.++...+|+.+++..+ ++...+..|+....|-
T Consensus 294 ~-i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 294 F-YWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred e-eCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 4 457999999999999887765 5678888999888663
No 116
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=3e-13 Score=148.60 Aligned_cols=171 Identities=13% Similarity=0.126 Sum_probs=123.4
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCcEE-EEeCCCCCCchhhhhhcc----------cC---CCchhHHHHHHHHh
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI-EVNASDSRGKADAKISKG----------IG---GSNANSIKELVSNE 460 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ii-EinaSd~rsk~~~~i~~~----------~g---~s~~~~i~e~l~~a 460 (790)
..++++||+||+|+||+++|..+|+.+.|.-- ...+...+.. ...+..+ -+ ....++++++....
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~s-C~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRG-CQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 46799999999999999999999999966311 0011111100 0011100 01 12366788877765
Q ss_pred hhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHH
Q 003873 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAK 540 (790)
Q Consensus 461 ~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~ 540 (790)
.... ..+.++|+|||++|.|+..+.++++++++ +.+...+++.+++.....+++++|||+.+.|.+++.+++..
T Consensus 101 ~~~~----~~g~~kV~iI~~ae~m~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~ 174 (334)
T PRK07993 101 YEHA----RLGGAKVVWLPDAALLTDAAANALLKTLE--EPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALT 174 (334)
T ss_pred hhcc----ccCCceEEEEcchHhhCHHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHH
Confidence 5443 25677899999999999988888888887 44455555555555788899999999999999999999998
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 003873 541 RLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577 (790)
Q Consensus 541 iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq 577 (790)
.|.. ...++++.+..++..++|++..|+.+++
T Consensus 175 ~L~~-----~~~~~~~~a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 175 WLSR-----EVTMSQDALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred HHHH-----ccCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 8863 2347777788899999999999998874
No 117
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=5.3e-13 Score=145.52 Aligned_cols=172 Identities=11% Similarity=0.134 Sum_probs=120.3
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCcEE-EEeCCCCCCc---------hhh-hhhcccC-CCchhHHHHHHHHhhh
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI-EVNASDSRGK---------ADA-KISKGIG-GSNANSIKELVSNEAL 462 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ii-EinaSd~rsk---------~~~-~i~~~~g-~s~~~~i~e~l~~a~~ 462 (790)
..++++||+||.|+||+++|+.+|+.+.|.-- ...+...+.. .|. .+...-+ ....+.++++......
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 45799999999999999999999999976321 1111111100 000 0110001 1236678887766554
Q ss_pred hccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHH
Q 003873 463 SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRL 542 (790)
Q Consensus 463 ~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL 542 (790)
.+. .+.++|+|||++|.|+..+.++++++++ +.+...+++++++.....+++++|||..+.|.+++.+++...|
T Consensus 102 ~~~----~g~~KV~iI~~a~~m~~~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L 175 (325)
T PRK06871 102 HAQ----QGGNKVVYIQGAERLTEAAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWL 175 (325)
T ss_pred ccc----cCCceEEEEechhhhCHHHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHH
Confidence 332 4667899999999999988888888887 3444445555555577888999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 003873 543 MQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577 (790)
Q Consensus 543 ~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq 577 (790)
.... ..+...+..++..++|.+..++..++
T Consensus 176 ~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~ 205 (325)
T PRK06871 176 QAQS-----SAEISEILTALRINYGRPLLALTFLE 205 (325)
T ss_pred HHHh-----ccChHHHHHHHHHcCCCHHHHHHHhh
Confidence 8653 23444566778889999988877663
No 118
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.50 E-value=3.1e-13 Score=164.19 Aligned_cols=203 Identities=16% Similarity=0.253 Sum_probs=131.4
Q ss_pred CCCc-cccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCC
Q 003873 353 KTPN-EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431 (790)
Q Consensus 353 ~sl~-dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaS 431 (790)
..|+ ++.|++.+++.|..|+..+... . .....++||+||||||||++|+++|+.++.+++.++.+
T Consensus 316 ~~l~~~~~G~~~~k~~i~~~~~~~~~~-------~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~ 381 (775)
T TIGR00763 316 EILDEDHYGLKKVKERILEYLAVQKLR-------G-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLG 381 (775)
T ss_pred HHhhhhcCChHHHHHHHHHHHHHHHhh-------c-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCC
Confidence 3444 4889999999999998864321 0 11235899999999999999999999999999999876
Q ss_pred CCCCchhhh--hhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccch----hHHHHHHHHh------
Q 003873 432 DSRGKADAK--ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR----GGIADLIASI------ 499 (790)
Q Consensus 432 d~rsk~~~~--i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~----~~l~~Ll~~i------ 499 (790)
..+...+.. ...++|.. ...+.+.+..+. ....||||||||.+....+ +.+..+++..
T Consensus 382 ~~~~~~~i~g~~~~~~g~~-~g~i~~~l~~~~---------~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~ 451 (775)
T TIGR00763 382 GVRDEAEIRGHRRTYVGAM-PGRIIQGLKKAK---------TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFS 451 (775)
T ss_pred CcccHHHHcCCCCceeCCC-CchHHHHHHHhC---------cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccc
Confidence 543211100 01112221 223334443321 2234999999999987433 3444444310
Q ss_pred --------hcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHH
Q 003873 500 --------KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIA-----NA-----EGLEVNEIALEEL 561 (790)
Q Consensus 500 --------~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~-----~~-----Egi~i~~~~l~~I 561 (790)
..+++.+|+++|. ...+.++|++||..|.|.+++.++...++.+.+ .. +++.++++++..|
T Consensus 452 d~~~~~~~d~s~v~~I~TtN~-~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i 530 (775)
T TIGR00763 452 DHYLDVPFDLSKVIFIATANS-IDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLL 530 (775)
T ss_pred cccCCceeccCCEEEEEecCC-chhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHH
Confidence 0133445555554 344558899999999999999999988887654 22 2457899999999
Q ss_pred HHHcc--CCHHHHHHHHHHHH
Q 003873 562 ADRVN--GDIRMAINQLQYMS 580 (790)
Q Consensus 562 a~~s~--GDiR~aIn~Lq~~~ 580 (790)
++... ..+|.+-..++..|
T Consensus 531 ~~~~~~e~g~R~l~r~i~~~~ 551 (775)
T TIGR00763 531 IKYYTREAGVRNLERQIEKIC 551 (775)
T ss_pred HHhcChhcCChHHHHHHHHHH
Confidence 98652 35565555555444
No 119
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4.9e-13 Score=156.34 Aligned_cols=221 Identities=18% Similarity=0.289 Sum_probs=149.0
Q ss_pred CCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeC
Q 003873 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430 (790)
Q Consensus 351 ~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEina 430 (790)
.+.+|.|++|.++++++|.+++.-..+.- .... .+-..++.+||+||||||||.||+++|.|.|.+++.+++
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP~---~Y~~-----lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSG 377 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKFLKNPE---QYQE-----LGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSG 377 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHHhcCHH---HHHH-----cCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeech
Confidence 34689999999999888887776422110 0011 223578999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc------------hhHHHHHHHH
Q 003873 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD------------RGGIADLIAS 498 (790)
Q Consensus 431 Sd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~------------~~~l~~Ll~~ 498 (790)
|+. ++...+ .....+++++..+. ...++||||||+|.+.... ...|+.|+-.
T Consensus 378 SEF-------vE~~~g-~~asrvr~lf~~ar--------~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~e 441 (774)
T KOG0731|consen 378 SEF-------VEMFVG-VGASRVRDLFPLAR--------KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVE 441 (774)
T ss_pred HHH-------HHHhcc-cchHHHHHHHHHhh--------ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHH
Confidence 863 333333 33567889988865 4567899999999886522 1345555544
Q ss_pred hh--cCCCcEEEEecccchhhhh-hcc--ccc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC----C
Q 003873 499 IK--ISKIPIICICNDRYSQKLK-SLV--NYC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG----D 568 (790)
Q Consensus 499 i~--~s~~pII~I~nd~~~~~l~-~L~--sR~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G----D 568 (790)
+. .+..-||+++.++....+. .|+ .|+ ..|....|+.....+++...+..-.+..++..+..|+..+.| |
T Consensus 442 mDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gad 521 (774)
T KOG0731|consen 442 MDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGAD 521 (774)
T ss_pred hcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHH
Confidence 43 2223466655544555554 444 233 348888999999999998877766666566777779988876 4
Q ss_pred HHHHHHHHHHHHh--cCCCCCHHHHHHHH
Q 003873 569 IRMAINQLQYMSL--SLSVIKYDDIRQRL 595 (790)
Q Consensus 569 iR~aIn~Lq~~~~--~~~~it~~~v~~~~ 595 (790)
|..+.|.....+. ....|+.+++..++
T Consensus 522 l~n~~neaa~~a~r~~~~~i~~~~~~~a~ 550 (774)
T KOG0731|consen 522 LANLCNEAALLAARKGLREIGTKDLEYAI 550 (774)
T ss_pred HHhhhhHHHHHHHHhccCccchhhHHHHH
Confidence 4444444433333 34566666665544
No 120
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.49 E-value=3.8e-13 Score=150.08 Aligned_cols=221 Identities=19% Similarity=0.266 Sum_probs=136.2
Q ss_pred hcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 349 KYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 349 KY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.....+++||.|.+.++++|..++......- .... ..+...++++||+||||||||++|+++|++++..++.+
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~--~~~~-----~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHP--ELFE-----EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCH--HHHH-----hcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 4445578999999999999999987532210 0000 01123578899999999999999999999999998888
Q ss_pred eCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc--------c---hhHHHHHHH
Q 003873 429 NASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG--------D---RGGIADLIA 497 (790)
Q Consensus 429 naSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~--------~---~~~l~~Ll~ 497 (790)
.+++.. ...++. ....++.++..+. ...+.||||||+|.+... + +..+..++.
T Consensus 188 ~~~~l~-------~~~~g~-~~~~i~~~f~~a~--------~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~ 251 (364)
T TIGR01242 188 VGSELV-------RKYIGE-GARLVREIFELAK--------EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLA 251 (364)
T ss_pred chHHHH-------HHhhhH-HHHHHHHHHHHHH--------hcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHH
Confidence 654321 111111 1223455554432 234579999999998532 1 123444554
Q ss_pred Hhh----cCCCcEEEEecccchhhh-hhccc--cc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC--
Q 003873 498 SIK----ISKIPIICICNDRYSQKL-KSLVN--YC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG-- 567 (790)
Q Consensus 498 ~i~----~s~~pII~I~nd~~~~~l-~~L~s--R~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G-- 567 (790)
.+. ...+.||+++|.. ..+ +.+++ |+ ..|.|..|+.++...++...+....+.- +..+..|+..+.|
T Consensus 252 ~ld~~~~~~~v~vI~ttn~~--~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~~~~la~~t~g~s 328 (364)
T TIGR01242 252 ELDGFDPRGNVKVIAATNRP--DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVDLEAIAKMTEGAS 328 (364)
T ss_pred HhhCCCCCCCEEEEEecCCh--hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCCHHHHHHHcCCCC
Confidence 433 2344455566632 333 44442 33 3588999999999999987765433321 1235666666644
Q ss_pred --CHHHHHHHHHHHHh--cCCCCCHHHHHHHH
Q 003873 568 --DIRMAINQLQYMSL--SLSVIKYDDIRQRL 595 (790)
Q Consensus 568 --DiR~aIn~Lq~~~~--~~~~it~~~v~~~~ 595 (790)
|++.+++..-+.+. ....|+.+++..++
T Consensus 329 g~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~ 360 (364)
T TIGR01242 329 GADLKAICTEAGMFAIREERDYVTMDDFIKAV 360 (364)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Confidence 77766665544443 24567777776654
No 121
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.9e-13 Score=144.45 Aligned_cols=214 Identities=21% Similarity=0.286 Sum_probs=133.5
Q ss_pred CCccccCCHHHHHHHHHHHHh--hhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCC
Q 003873 354 TPNEIVGNQQLVKQLHTWLAH--WNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~--w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaS 431 (790)
.++||+|...+++-|++.+-. |.-.+|+.. ..+-++||++||||+|||.||++||-++|..|+-+.++
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi----------rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSss 279 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI----------RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSS 279 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc----------ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechh
Confidence 457899999999998887653 444444321 13578999999999999999999999999999999888
Q ss_pred CCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc-----c----hhHHHHHHHHh---
Q 003873 432 DSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-----D----RGGIADLIASI--- 499 (790)
Q Consensus 432 d~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~-----~----~~~l~~Ll~~i--- 499 (790)
...+|+. |.....++=+|.-+.. ..+.+|||||||.|... . +..-.+|+-.+
T Consensus 280 tltSKwR--------GeSEKlvRlLFemARf--------yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~ 343 (491)
T KOG0738|consen 280 TLTSKWR--------GESEKLVRLLFEMARF--------YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGV 343 (491)
T ss_pred hhhhhhc--------cchHHHHHHHHHHHHH--------hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcc
Confidence 7655542 1222345556665553 34569999999999651 1 11222333332
Q ss_pred ----hcCCCcEEEEecccchhhhhhccccccc-cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC----CHH
Q 003873 500 ----KISKIPIICICNDRYSQKLKSLVNYCSD-LRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG----DIR 570 (790)
Q Consensus 500 ----~~s~~pII~I~nd~~~~~l~~L~sR~~~-I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G----DiR 570 (790)
+..++.+|+.+++..-.+-..|++|+.. |.++-|+.+.....| .++..+-...++-.++.|++.+.| ||+
T Consensus 344 ~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li-~~~l~~~~~~~~~~~~~lae~~eGySGaDI~ 422 (491)
T KOG0738|consen 344 QGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALI-KILLRSVELDDPVNLEDLAERSEGYSGADIT 422 (491)
T ss_pred ccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHH-HHhhccccCCCCccHHHHHHHhcCCChHHHH
Confidence 2233344444444333444678888765 555556655555444 455444444455557777776644 788
Q ss_pred HHHHHHHHHHhc--CCCCCHHHHHHH
Q 003873 571 MAINQLQYMSLS--LSVIKYDDIRQR 594 (790)
Q Consensus 571 ~aIn~Lq~~~~~--~~~it~~~v~~~ 594 (790)
.+.....+..+. -..++.+.+...
T Consensus 423 nvCreAsm~~mRR~i~g~~~~ei~~l 448 (491)
T KOG0738|consen 423 NVCREASMMAMRRKIAGLTPREIRQL 448 (491)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHhhhh
Confidence 777666555544 123445555443
No 122
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=8.6e-13 Score=143.66 Aligned_cols=171 Identities=19% Similarity=0.276 Sum_probs=117.9
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCcEEE-EeCCCC------CCchhhh-hh---cccC-----CCchhHHHHHHH
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE-VNASDS------RGKADAK-IS---KGIG-----GSNANSIKELVS 458 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE-inaSd~------rsk~~~~-i~---~~~g-----~s~~~~i~e~l~ 458 (790)
..++++||+||+|+||+++|..+|+.+.|.-.. ...... .+..|.. ++ ..-+ ....+.|+++..
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 457899999999999999999999998663100 000000 0000000 00 0000 123567777776
Q ss_pred HhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHH
Q 003873 459 NEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEI 538 (790)
Q Consensus 459 ~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei 538 (790)
...... ..+.++|+|||++|.|+..+.++++++++. ....+.||++|+. ...++++|+|||..+.|.+|+.+++
T Consensus 104 ~~~~~p----~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-Pp~~~~fiL~~~~-~~~lLpTIrSRCq~i~~~~~~~~~~ 177 (319)
T PRK08769 104 KLALTP----QYGIAQVVIVDPADAINRAACNALLKTLEE-PSPGRYLWLISAQ-PARLPATIRSRCQRLEFKLPPAHEA 177 (319)
T ss_pred HHhhCc----ccCCcEEEEeccHhhhCHHHHHHHHHHhhC-CCCCCeEEEEECC-hhhCchHHHhhheEeeCCCcCHHHH
Confidence 654332 245678999999999999888888888874 2334556666654 6678899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 003873 539 AKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577 (790)
Q Consensus 539 ~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq 577 (790)
...|.. .+ +++..+..++..++|.+..++..++
T Consensus 178 ~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~ 210 (319)
T PRK08769 178 LAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLR 210 (319)
T ss_pred HHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhc
Confidence 988864 23 5666677788999999998887764
No 123
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.45 E-value=1.3e-12 Score=158.22 Aligned_cols=199 Identities=20% Similarity=0.277 Sum_probs=128.8
Q ss_pred CCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCC
Q 003873 352 PKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431 (790)
Q Consensus 352 P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaS 431 (790)
..+++||.|.+.+++.|+.++..+...- . -... .+...++++||+||||||||++|+++|.+++++++.++++
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~-~-~~~~-----~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~ 521 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHP-E-IFEK-----MGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGP 521 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCH-H-HHHh-----cCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehH
Confidence 3478999999999999998887533210 0 0000 1124568899999999999999999999999999999887
Q ss_pred CCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc---------hhHHHHHHHHhhc-
Q 003873 432 DSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD---------RGGIADLIASIKI- 501 (790)
Q Consensus 432 d~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~---------~~~l~~Ll~~i~~- 501 (790)
+..+ .++|.+ ...++.++..+. ...++||||||+|.+.... ...+..|+..+..
T Consensus 522 ~l~~-------~~vGes-e~~i~~~f~~A~--------~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~ 585 (733)
T TIGR01243 522 EILS-------KWVGES-EKAIREIFRKAR--------QAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGI 585 (733)
T ss_pred HHhh-------cccCcH-HHHHHHHHHHHH--------hcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcc
Confidence 5422 233332 345778887764 3456899999999986421 1233445554432
Q ss_pred -CCCcEEEEecccchhhh-hhccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHccC----CHHH
Q 003873 502 -SKIPIICICNDRYSQKL-KSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNE-IALEELADRVNG----DIRM 571 (790)
Q Consensus 502 -s~~pII~I~nd~~~~~l-~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~-~~l~~Ia~~s~G----DiR~ 571 (790)
....+++|++++....+ +.+++ |+. .|.|..|+.++...+++.... ++.+++ ..+..|++.+.| ||..
T Consensus 586 ~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~--~~~~~~~~~l~~la~~t~g~sgadi~~ 663 (733)
T TIGR01243 586 QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR--SMPLAEDVDLEELAEMTEGYTGADIEA 663 (733)
T ss_pred cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc--CCCCCccCCHHHHHHHcCCCCHHHHHH
Confidence 22234444433344455 45553 654 488999999999999876553 344433 347788887754 5555
Q ss_pred HHHH
Q 003873 572 AINQ 575 (790)
Q Consensus 572 aIn~ 575 (790)
+++.
T Consensus 664 ~~~~ 667 (733)
T TIGR01243 664 VCRE 667 (733)
T ss_pred HHHH
Confidence 4433
No 124
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.1e-12 Score=147.26 Aligned_cols=204 Identities=19% Similarity=0.264 Sum_probs=131.6
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCC
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDS 433 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~ 433 (790)
+++||-+.+++..+|..++.. .-.... -. +..+-..+..+|||||||||||.+|+++|++.|.+|+.+....
T Consensus 509 tW~dIGaL~~vR~eL~~aI~~-PiK~pd-~~-----k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPE- 580 (802)
T KOG0733|consen 509 TWDDIGALEEVRLELNMAILA-PIKRPD-LF-----KALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPE- 580 (802)
T ss_pred ChhhcccHHHHHHHHHHHHhh-hccCHH-HH-----HHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHH-
Confidence 566777788888888776654 211000 00 1122356789999999999999999999999999999987653
Q ss_pred CCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc--ch------hHHHHHHHHhhc--CC
Q 003873 434 RGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG--DR------GGIADLIASIKI--SK 503 (790)
Q Consensus 434 rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~--~~------~~l~~Ll~~i~~--s~ 503 (790)
.+..++|.+. ..++.+|.++. ...++|||+||+|.|... +. ..+..|+-.+.. .+
T Consensus 581 ------LlNkYVGESE-rAVR~vFqRAR--------~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R 645 (802)
T KOG0733|consen 581 ------LLNKYVGESE-RAVRQVFQRAR--------ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER 645 (802)
T ss_pred ------HHHHHhhhHH-HHHHHHHHHhh--------cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccc
Confidence 4555565544 46888888875 456899999999999762 11 123444433321 23
Q ss_pred CcEEEEecccchhhhhh-cc--cccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHc------cCCHHHH
Q 003873 504 IPIICICNDRYSQKLKS-LV--NYCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIA-LEELADRV------NGDIRMA 572 (790)
Q Consensus 504 ~pII~I~nd~~~~~l~~-L~--sR~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~-l~~Ia~~s------~GDiR~a 572 (790)
.-|.+|+.++...++++ ++ .|.. .+....|+.++...+|+.+.+..+..+++++ ++.|+... +.|+-.+
T Consensus 646 ~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaL 725 (802)
T KOG0733|consen 646 RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAAL 725 (802)
T ss_pred cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHH
Confidence 34555544445555543 43 2333 3556778999999999999887666666544 77777643 3366555
Q ss_pred HHHHHHHH
Q 003873 573 INQLQYMS 580 (790)
Q Consensus 573 In~Lq~~~ 580 (790)
+.--.+.+
T Consensus 726 vreAsi~A 733 (802)
T KOG0733|consen 726 VREASILA 733 (802)
T ss_pred HHHHHHHH
Confidence 44433333
No 125
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.42 E-value=1.6e-12 Score=149.07 Aligned_cols=192 Identities=18% Similarity=0.203 Sum_probs=116.4
Q ss_pred hhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
+..+++.+.+++||.|.+..+++|+.++.....+. .-... .+-..++.+|||||||||||++|+++|++++..
T Consensus 171 l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~--~l~~~-----~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 171 LVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHP--ELYRE-----YDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred ceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCH--HHHHh-----ccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 45577888899999999999999999987522110 00000 112356899999999999999999999999755
Q ss_pred EE--------EEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--------
Q 003873 425 AI--------EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-------- 488 (790)
Q Consensus 425 ii--------EinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-------- 488 (790)
++ .++.... ..+..+++. ....++.++..+.... ....+.||||||+|.+....
T Consensus 244 i~~~~~~~~~fl~v~~~-----eLl~kyvGe-te~~ir~iF~~Ar~~a----~~g~p~IIfIDEiD~L~~~R~~~~s~d~ 313 (512)
T TIGR03689 244 IGAETGDKSYFLNIKGP-----ELLNKYVGE-TERQIRLIFQRAREKA----SDGRPVIVFFDEMDSIFRTRGSGVSSDV 313 (512)
T ss_pred cccccCCceeEEeccch-----hhcccccch-HHHHHHHHHHHHHHHh----hcCCCceEEEehhhhhhcccCCCccchH
Confidence 22 2222110 112222222 2334566665543221 12456899999999986421
Q ss_pred -hhHHHHHHHHhhcC--CCcEEEEecccchhhh-hhccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCC
Q 003873 489 -RGGIADLIASIKIS--KIPIICICNDRYSQKL-KSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVN 554 (790)
Q Consensus 489 -~~~l~~Ll~~i~~s--~~pII~I~nd~~~~~l-~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~ 554 (790)
...+..|+..+... ...+++|+..+....+ +.|++ |+. .|.|.+|+.++...+|...+.. .+.++
T Consensus 314 e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~ 385 (512)
T TIGR03689 314 ETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLD 385 (512)
T ss_pred HHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCch
Confidence 11234555544321 1234444333344455 45654 544 4899999999999999887643 34553
No 126
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.42 E-value=1.6e-12 Score=128.64 Aligned_cols=138 Identities=22% Similarity=0.352 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcE--------------
Q 003873 360 GNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA-------------- 425 (790)
Q Consensus 360 G~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~i-------------- 425 (790)
||+.+++.|...+.+ +..++++||+||+|+||+++|+.+|+.+.+.-
T Consensus 1 gq~~~~~~L~~~~~~-------------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~ 61 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRR 61 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHH
T ss_pred CcHHHHHHHHHHHHc-------------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHH
Confidence 788899999888876 23578999999999999999999999985432
Q ss_pred ---------EEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHH
Q 003873 426 ---------IEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLI 496 (790)
Q Consensus 426 ---------iEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll 496 (790)
++++...... ....++++++........ ....++|+||||+|.|+..++++|+..+
T Consensus 62 ~~~~~~~d~~~~~~~~~~~-----------~i~i~~ir~i~~~~~~~~----~~~~~KviiI~~ad~l~~~a~NaLLK~L 126 (162)
T PF13177_consen 62 IEEGNHPDFIIIKPDKKKK-----------SIKIDQIREIIEFLSLSP----SEGKYKVIIIDEADKLTEEAQNALLKTL 126 (162)
T ss_dssp HHTT-CTTEEEEETTTSSS-----------SBSHHHHHHHHHHCTSS-----TTSSSEEEEEETGGGS-HHHHHHHHHHH
T ss_pred HHhccCcceEEEecccccc-----------hhhHHHHHHHHHHHHHHH----hcCCceEEEeehHhhhhHHHHHHHHHHh
Confidence 2222211100 123467777776654332 2456889999999999999999988888
Q ss_pred HHhhcCCC-cEEEEecccchhhhhhccccccccccCCCC
Q 003873 497 ASIKISKI-PIICICNDRYSQKLKSLVNYCSDLRFRKPR 534 (790)
Q Consensus 497 ~~i~~s~~-pII~I~nd~~~~~l~~L~sR~~~I~F~~pt 534 (790)
+ +.+.. .+|++|+ ....+++++++||..|+|.+++
T Consensus 127 E--epp~~~~fiL~t~-~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 127 E--EPPENTYFILITN-NPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp H--STTTTEEEEEEES--GGGS-HHHHTTSEEEEE----
T ss_pred c--CCCCCEEEEEEEC-ChHHChHHHHhhceEEecCCCC
Confidence 8 34444 4555555 4677899999999999998864
No 127
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.42 E-value=8.4e-12 Score=138.61 Aligned_cols=183 Identities=17% Similarity=0.246 Sum_probs=129.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh-----CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML-----GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSK 470 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel-----g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~ 470 (790)
..+.++||||.|+|||+|+++++++. +..++++.+.+........+. ......|++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~----~~~~~~Fk~~y------------- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALR----DNEMEKFKEKY------------- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHH----hhhHHHHHHhh-------------
Confidence 46899999999999999999999887 234666655443211100000 00111222222
Q ss_pred CCceEEEEecCCCCCccc--hhHHHHHHHHhhcCCCcEEEEecccchhhh----hhcccc---ccccccCCCCHHHHHHH
Q 003873 471 HPKTVLIMDEVDGMSAGD--RGGIADLIASIKISKIPIICICNDRYSQKL----KSLVNY---CSDLRFRKPRKQEIAKR 541 (790)
Q Consensus 471 ~~~~VLIIDEiD~L~~~~--~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l----~~L~sR---~~~I~F~~pt~~ei~~i 541 (790)
.-.+|+||+++.+.+.+ +..+..+++.+.....-|| ++.|+.+..+ +.|++| +..+.+.+|+.+....+
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIv-ltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIV-LTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEE-EEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 23589999999998853 5667777777665555444 4555444333 456666 66799999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh----cCCCCCHHHHHHHHHh
Q 003873 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL----SLSVIKYDDIRQRLLS 597 (790)
Q Consensus 542 L~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~----~~~~it~~~v~~~~~~ 597 (790)
|+..+...++.++++++..|+.....|+|.+...|..+.. .+..||.+.+++.+..
T Consensus 253 L~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~ 312 (408)
T COG0593 253 LRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKD 312 (408)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHH
Confidence 9999999999999999999999999999997777754432 2457899888887654
No 128
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.41 E-value=2e-12 Score=158.04 Aligned_cols=204 Identities=19% Similarity=0.282 Sum_probs=143.8
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh--
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML-- 421 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel-- 421 (790)
.-++++-+...++.++|++..++.+..+|..+ ..+++||+||||||||++|+.+|..+
T Consensus 167 ~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~--------------------~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 167 TNLTKEAIDGNLDPVIGREKEIERVIQILGRR--------------------TKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred HHHHHHHHcCCCCCCCCcHHHHHHHHHHHccc--------------------ccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 35667778888999999999999999999872 34688999999999999999999987
Q ss_pred --------CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--hhH
Q 003873 422 --------GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--RGG 491 (790)
Q Consensus 422 --------g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--~~~ 491 (790)
++.+++++.+..-.. .. ..+.....++.++..+. ...+.||||||+|.+.+.. .+.
T Consensus 227 ~~vp~~l~~~~i~~l~~~~l~ag-----~~-~~ge~e~rl~~i~~~~~--------~~~~~ILfiDEih~l~~~g~~~g~ 292 (821)
T CHL00095 227 RDVPDILEDKLVITLDIGLLLAG-----TK-YRGEFEERLKRIFDEIQ--------ENNNIILVIDEVHTLIGAGAAEGA 292 (821)
T ss_pred CCCChhhcCCeEEEeeHHHHhcc-----CC-CccHHHHHHHHHHHHHH--------hcCCeEEEEecHHHHhcCCCCCCc
Confidence 467888876532100 00 01111235666666543 2345799999999887521 111
Q ss_pred --HHHHH-HHhhcCCCcEEEEeccc-ch---hhhhhccccccccccCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHH
Q 003873 492 --IADLI-ASIKISKIPIICICNDR-YS---QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN----AEGLEVNEIALEE 560 (790)
Q Consensus 492 --l~~Ll-~~i~~s~~pII~I~nd~-~~---~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~----~Egi~i~~~~l~~ 560 (790)
+..++ ..+....+.+|+++|.. |. ..-+.|.+||..|.+..|+.++...+|+.+.. ..++.++++++..
T Consensus 293 ~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~ 372 (821)
T CHL00095 293 IDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEA 372 (821)
T ss_pred ccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 22222 33445566677766643 22 23367889999999999999998888876543 2467799999999
Q ss_pred HHHHccC---C---HHHHHHHHHHHHh
Q 003873 561 LADRVNG---D---IRMAINQLQYMSL 581 (790)
Q Consensus 561 Ia~~s~G---D---iR~aIn~Lq~~~~ 581 (790)
++..+.+ | ++.+|.+|..+|.
T Consensus 373 i~~ls~~yi~~r~lPdkaidlld~a~a 399 (821)
T CHL00095 373 AAKLSDQYIADRFLPDKAIDLLDEAGS 399 (821)
T ss_pred HHHHhhccCccccCchHHHHHHHHHHH
Confidence 9988865 3 6679999977664
No 129
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.40 E-value=3.5e-12 Score=156.43 Aligned_cols=206 Identities=16% Similarity=0.234 Sum_probs=142.7
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML- 421 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel- 421 (790)
...++++.+|..++.++|++..++.+...|.. ...+++||+||||||||++|+.+|..+
T Consensus 160 ~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r--------------------~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 160 ARDLTERAREGKLDPVIGRDEEIRRTIQVLSR--------------------RTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred hhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhc--------------------CCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 34689999999999999999999999888876 235788999999999999999999986
Q ss_pred ---------CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc--cchh
Q 003873 422 ---------GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA--GDRG 490 (790)
Q Consensus 422 ---------g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~--~~~~ 490 (790)
+++++.++.+..-. .....+.....++.++..... ...+.||||||+|.+.+ ...+
T Consensus 220 ~~~~p~~l~~~~~~~l~~~~l~a------~~~~~g~~e~~l~~~l~~~~~-------~~~~~ILfIDEih~l~~~g~~~~ 286 (852)
T TIGR03346 220 NGDVPESLKNKRLLALDMGALIA------GAKYRGEFEERLKAVLNEVTK-------SEGQIILFIDELHTLVGAGKAEG 286 (852)
T ss_pred ccCCchhhcCCeEEEeeHHHHhh------cchhhhhHHHHHHHHHHHHHh-------cCCCeEEEeccHHHhhcCCCCcc
Confidence 56677766442110 000011112345666655321 13467999999999974 1111
Q ss_pred ---HHHHHHHHhhcCCCcEEEEeccc-c---hhhhhhccccccccccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHH
Q 003873 491 ---GIADLIASIKISKIPIICICNDR-Y---SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA----EGLEVNEIALE 559 (790)
Q Consensus 491 ---~l~~Ll~~i~~s~~pII~I~nd~-~---~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~----Egi~i~~~~l~ 559 (790)
....|...+....+.+|+.+|.. + ...-+.|.+||..|.+..|+.++...+|..+..+ .++.+.++++.
T Consensus 287 ~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~ 366 (852)
T TIGR03346 287 AMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIV 366 (852)
T ss_pred hhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHH
Confidence 12222223344455566655533 2 2234778999999999999999999999876554 35678899999
Q ss_pred HHHHHccC---C---HHHHHHHHHHHHh
Q 003873 560 ELADRVNG---D---IRMAINQLQYMSL 581 (790)
Q Consensus 560 ~Ia~~s~G---D---iR~aIn~Lq~~~~ 581 (790)
.++..+.+ | +..||.+|..+|.
T Consensus 367 ~~~~ls~~yi~~r~lPdkAidlld~a~a 394 (852)
T TIGR03346 367 AAATLSHRYITDRFLPDKAIDLIDEAAA 394 (852)
T ss_pred HHHHhccccccccCCchHHHHHHHHHHH
Confidence 98887744 3 6779999987764
No 130
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=8.9e-12 Score=135.64 Aligned_cols=168 Identities=13% Similarity=0.191 Sum_probs=115.2
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcc-------c-----C-CCchhHHHHHHHHhh
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG-------I-----G-GSNANSIKELVSNEA 461 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~-------~-----g-~s~~~~i~e~l~~a~ 461 (790)
..++++||+||.|+||+++|+.+|+.+.|.-..-.+...+. ....+..+ + + ....+.|+++.....
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~-sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~ 101 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCH-SCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQ 101 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCH-HHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHh
Confidence 46789999999999999999999999966421111111110 00011110 0 1 123567777655443
Q ss_pred hhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHH
Q 003873 462 LSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKR 541 (790)
Q Consensus 462 ~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~i 541 (790)
... ..+.++|+|||++|.|+....+++.++++ +.+...+++++++.....+++++|||..+.|.+|+.+++...
T Consensus 102 ~~~----~~~~~kV~iI~~ae~m~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~ 175 (319)
T PRK06090 102 ESS----QLNGYRLFVIEPADAMNESASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQW 175 (319)
T ss_pred hCc----ccCCceEEEecchhhhCHHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHH
Confidence 322 24567899999999999988888888887 344444444444457788999999999999999999999988
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 003873 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577 (790)
Q Consensus 542 L~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq 577 (790)
|.. +++. ....++..++|++..++..++
T Consensus 176 L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 176 LKG----QGIT----VPAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred HHH----cCCc----hHHHHHHHcCCCHHHHHHHhC
Confidence 864 3443 234677889999999887763
No 131
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=6e-12 Score=128.38 Aligned_cols=207 Identities=18% Similarity=0.255 Sum_probs=132.1
Q ss_pred chhhhhcCCC-CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 344 LTWTEKYRPK-TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 344 ~lW~eKY~P~-sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.++..--+|. ++.|+-|-+-+.+++++.++.-.. +. ...++.+-.+++.+|||||||||||.||+++|+..-
T Consensus 142 ~ml~~~ekpdvsy~diggld~qkqeireavelplt---~~----~ly~qigidpprgvllygppg~gktml~kava~~t~ 214 (408)
T KOG0727|consen 142 SMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLT---HA----DLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 214 (408)
T ss_pred cccCCCCCCCccccccccchhhHHHHHHHHhccch---HH----HHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc
Confidence 3445555565 788998887777888777764110 00 001123346789999999999999999999999999
Q ss_pred CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc--------cchh---H
Q 003873 423 FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA--------GDRG---G 491 (790)
Q Consensus 423 ~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~--------~~~~---~ 491 (790)
..+|.++.|.. +.+++|... ..++++|.-+. ...+.||||||+|.+.. .++. .
T Consensus 215 a~firvvgsef-------vqkylgegp-rmvrdvfrlak--------enapsiifideidaiatkrfdaqtgadrevqri 278 (408)
T KOG0727|consen 215 AAFIRVVGSEF-------VQKYLGEGP-RMVRDVFRLAK--------ENAPSIIFIDEIDAIATKRFDAQTGADREVQRI 278 (408)
T ss_pred hheeeeccHHH-------HHHHhccCc-HHHHHHHHHHh--------ccCCcEEEeehhhhHhhhhccccccccHHHHHH
Confidence 99999998853 445555433 35777776654 45668999999998854 2333 3
Q ss_pred HHHHHHHhh----cCCCcEEEEecccchhhhhhccc--c-ccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 003873 492 IADLIASIK----ISKIPIICICNDRYSQKLKSLVN--Y-CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELAD- 563 (790)
Q Consensus 492 l~~Ll~~i~----~s~~pII~I~nd~~~~~l~~L~s--R-~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~- 563 (790)
+.+|++.+. .+++.+|+.+|. ...+-+.|++ | -..|.|+-|+..+-+-++..|+.+.++.-+-+ ++.++.
T Consensus 279 l~ellnqmdgfdq~~nvkvimatnr-adtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vd-le~~v~r 356 (408)
T KOG0727|consen 279 LIELLNQMDGFDQTTNVKVIMATNR-ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVD-LEDLVAR 356 (408)
T ss_pred HHHHHHhccCcCcccceEEEEecCc-ccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccC-HHHHhcC
Confidence 445555442 456667777763 2333344442 2 23488998888888888888887766543222 344433
Q ss_pred ---HccCCHHHHHHH
Q 003873 564 ---RVNGDIRMAINQ 575 (790)
Q Consensus 564 ---~s~GDiR~aIn~ 575 (790)
.++.||..+..-
T Consensus 357 pdkis~adi~aicqe 371 (408)
T KOG0727|consen 357 PDKISGADINAICQE 371 (408)
T ss_pred ccccchhhHHHHHHH
Confidence 334455544433
No 132
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.37 E-value=1.4e-11 Score=146.78 Aligned_cols=226 Identities=16% Similarity=0.213 Sum_probs=146.0
Q ss_pred hhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
.|.......++.|+.|.....+.|...+..+...... . ......++++||+||||||||++++++|.+++.+
T Consensus 141 ~~~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~---~-----~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~ 212 (644)
T PRK10733 141 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRF---Q-----KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 212 (644)
T ss_pred ccCchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHH---H-----hcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4444455668999999988888777766542211000 0 0112346789999999999999999999999999
Q ss_pred EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-----------hhHHH
Q 003873 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-----------RGGIA 493 (790)
Q Consensus 425 iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-----------~~~l~ 493 (790)
++.+++++.... .. +.....+++++..+. ...++||||||+|.+.... ...+.
T Consensus 213 f~~is~~~~~~~-------~~-g~~~~~~~~~f~~a~--------~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln 276 (644)
T PRK10733 213 FFTISGSDFVEM-------FV-GVGASRVRDMFEQAK--------KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN 276 (644)
T ss_pred EEEEehHHhHHh-------hh-cccHHHHHHHHHHHH--------hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHH
Confidence 999988764221 11 122345666666643 2356899999999985411 12344
Q ss_pred HHHHHhhc--CCCcEEEEecccchhhhh-hccc--cc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Q 003873 494 DLIASIKI--SKIPIICICNDRYSQKLK-SLVN--YC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567 (790)
Q Consensus 494 ~Ll~~i~~--s~~pII~I~nd~~~~~l~-~L~s--R~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G 567 (790)
.++..+.. ....+|+|+..+....++ .+++ |+ ..|.|..|+.++...+|...+.+..+.. +..+..|++.+.|
T Consensus 277 ~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-~~d~~~la~~t~G 355 (644)
T PRK10733 277 QMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-DIDAAIIARGTPG 355 (644)
T ss_pred HHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-cCCHHHHHhhCCC
Confidence 45443331 233455544443555554 4442 44 3588999999999999998876544322 2235678888887
Q ss_pred ----CHHHHHHHHHHHHhc--CCCCCHHHHHHHH
Q 003873 568 ----DIRMAINQLQYMSLS--LSVIKYDDIRQRL 595 (790)
Q Consensus 568 ----DiR~aIn~Lq~~~~~--~~~it~~~v~~~~ 595 (790)
|+..+++.....+.. ...|+..++.++.
T Consensus 356 ~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~ 389 (644)
T PRK10733 356 FSGADLANLVNEAALFAARGNKRVVSMVEFEKAK 389 (644)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 999988887665543 4568888876654
No 133
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.36 E-value=1.4e-11 Score=148.88 Aligned_cols=184 Identities=16% Similarity=0.234 Sum_probs=123.1
Q ss_pred cccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCc
Q 003873 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436 (790)
Q Consensus 357 dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk 436 (790)
+..|.+.+++.|..||...... .......++|+|||||||||+++.+|+.++.+++.++.+..+..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~--------------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~ 388 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV--------------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDE 388 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc--------------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCH
Confidence 4889999999999999963221 01234689999999999999999999999999999987765432
Q ss_pred hhhh-hhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccch----hHHHHHHHHh------------
Q 003873 437 ADAK-ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR----GGIADLIASI------------ 499 (790)
Q Consensus 437 ~~~~-i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~----~~l~~Ll~~i------------ 499 (790)
.... ......+.....+...+..+ .....||||||+|.+....+ ..+..+++--
T Consensus 389 ~~i~g~~~~~~g~~~G~~~~~l~~~---------~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~ 459 (784)
T PRK10787 389 AEIRGHRRTYIGSMPGKLIQKMAKV---------GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEV 459 (784)
T ss_pred HHhccchhccCCCCCcHHHHHHHhc---------CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccc
Confidence 1100 00111111222233323221 12345999999999987543 4455554310
Q ss_pred --hcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHHc
Q 003873 500 --KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN-----A-----EGLEVNEIALEELADRV 565 (790)
Q Consensus 500 --~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~-----~-----Egi~i~~~~l~~Ia~~s 565 (790)
..+++-+||++| +..+.++|++||..|.|.+++.+++..+.++.+. + ..+.++++++..|++.+
T Consensus 460 ~~dls~v~~i~TaN--~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~y 535 (784)
T PRK10787 460 DYDLSDVMFVATSN--SMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYY 535 (784)
T ss_pred cccCCceEEEEcCC--CCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhC
Confidence 114444555554 3456689999999999999999999988876653 1 13568999999999865
No 134
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.35 E-value=3.4e-12 Score=120.20 Aligned_cols=112 Identities=26% Similarity=0.425 Sum_probs=75.5
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEe
Q 003873 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMD 479 (790)
Q Consensus 400 lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIID 479 (790)
+||+||||||||++|+.+|+.+++++++++++...+. ........+..++..+... ..+.||+||
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~--------~~~~~~~~i~~~~~~~~~~-------~~~~vl~iD 65 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISS--------YAGDSEQKIRDFFKKAKKS-------AKPCVLFID 65 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTS--------STTHHHHHHHHHHHHHHHT-------STSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccc--------ccccccccccccccccccc-------ccceeeeec
Confidence 6999999999999999999999999999998854321 1112234566777665321 136899999
Q ss_pred cCCCCCccc--------hhHHHHHHHHhh---c--CCCcEEEEecccchhhhhhcc-ccccc
Q 003873 480 EVDGMSAGD--------RGGIADLIASIK---I--SKIPIICICNDRYSQKLKSLV-NYCSD 527 (790)
Q Consensus 480 EiD~L~~~~--------~~~l~~Ll~~i~---~--s~~pII~I~nd~~~~~l~~L~-sR~~~ 527 (790)
|+|.+.... ...+..|+..+. . .++.||++||+ .....++++ +||..
T Consensus 66 e~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~-~~~i~~~l~~~rf~~ 126 (132)
T PF00004_consen 66 EIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS-PDKIDPALLRSRFDR 126 (132)
T ss_dssp TGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS-GGGSCHHHHSTTSEE
T ss_pred cchhcccccccccccccccccceeeecccccccccccceeEEeeCC-hhhCCHhHHhCCCcE
Confidence 999998755 223344444443 2 23466667776 454556677 66653
No 135
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.5e-11 Score=125.31 Aligned_cols=222 Identities=22% Similarity=0.337 Sum_probs=140.4
Q ss_pred ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
-+++.++|.--.+++-+-|-+.+++++++.++.--+ +.. .....+-..++.+|||||||+|||.+|+++|.+.
T Consensus 133 VsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvK---HPE----LF~aLGIaQPKGvlLygppgtGktLlaraVahht 205 (404)
T KOG0728|consen 133 VSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK---HPE----LFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 205 (404)
T ss_pred hHHHhhhhCCccHHHHhccHHHHHHHHHHHHhcccc---CHH----HHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc
Confidence 466777777665666565678889999988875111 000 0011233568999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc--------cc---hh
Q 003873 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA--------GD---RG 490 (790)
Q Consensus 422 g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~--------~~---~~ 490 (790)
.|.++.+..|. .+..++|.. ...++++|--+. .+.+.||||||||.+.. ++ +.
T Consensus 206 ~c~firvsgse-------lvqk~igeg-srmvrelfvmar--------ehapsiifmdeidsigs~r~e~~~ggdsevqr 269 (404)
T KOG0728|consen 206 DCTFIRVSGSE-------LVQKYIGEG-SRMVRELFVMAR--------EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQR 269 (404)
T ss_pred ceEEEEechHH-------HHHHHhhhh-HHHHHHHHHHHH--------hcCCceEeeecccccccccccCCCCccHHHHH
Confidence 99999998764 344444433 335667665543 46678999999999854 12 23
Q ss_pred HHHHHHHHhh---cC-CCcEEEEecccchhhh-hhccc--cc-cccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHH
Q 003873 491 GIADLIASIK---IS-KIPIICICNDRYSQKL-KSLVN--YC-SDLRFRKPRKQEIAKRLMQIANAEGLE--VNEIALEE 560 (790)
Q Consensus 491 ~l~~Ll~~i~---~s-~~pII~I~nd~~~~~l-~~L~s--R~-~~I~F~~pt~~ei~~iL~~I~~~Egi~--i~~~~l~~ 560 (790)
.+++|++.+. .+ ++.+|+.+| + ..++ +.|++ |. ..|.|++|+.+....+|+-...+.++. ++ +..
T Consensus 270 tmlellnqldgfeatknikvimatn-r-idild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~---l~k 344 (404)
T KOG0728|consen 270 TMLELLNQLDGFEATKNIKVIMATN-R-IDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGIN---LRK 344 (404)
T ss_pred HHHHHHHhccccccccceEEEEecc-c-cccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccC---HHH
Confidence 4556665553 23 344555555 2 3344 34442 22 349999999999999988666554432 22 445
Q ss_pred HHHHc----cCCHHHHHHHHHHHHhcC--CCCCHHHH
Q 003873 561 LADRV----NGDIRMAINQLQYMSLSL--SVIKYDDI 591 (790)
Q Consensus 561 Ia~~s----~GDiR~aIn~Lq~~~~~~--~~it~~~v 591 (790)
|++.. +.++..+..-.-++++.. -.+|.++.
T Consensus 345 iaekm~gasgaevk~vcteagm~alrerrvhvtqedf 381 (404)
T KOG0728|consen 345 IAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 381 (404)
T ss_pred HHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHH
Confidence 55544 335666655555665542 34455544
No 136
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=5.2e-12 Score=135.86 Aligned_cols=192 Identities=23% Similarity=0.295 Sum_probs=126.7
Q ss_pred CCccccCCHHHHHHHHHHHHh---hhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeC
Q 003873 354 TPNEIVGNQQLVKQLHTWLAH---WNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~---w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEina 430 (790)
+|+||-|-+.+++.|++.+.- +...|. .+. --..++++||+||||||||.+|+++|++.|..++-+..
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~------~g~---Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~ 160 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFA------KGK---LLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV 160 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhc------ccc---cccCCccceecCCCCchHHHHHHHHHHHcCCCcceeec
Confidence 688999999999988877654 111111 111 12468999999999999999999999999999999988
Q ss_pred CCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHH--------Hh---
Q 003873 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIA--------SI--- 499 (790)
Q Consensus 431 Sd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~--------~i--- 499 (790)
+...+++ +|.. ...++.+|.-+. +-.++||||||+|.+...-+..-++... ..
T Consensus 161 s~lt~KW-------fgE~-eKlv~AvFslAs--------Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl 224 (386)
T KOG0737|consen 161 SNLTSKW-------FGEA-QKLVKAVFSLAS--------KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGL 224 (386)
T ss_pred cccchhh-------HHHH-HHHHHHHHhhhh--------hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccc
Confidence 8665543 2211 122344444332 4567899999999987532221112211 11
Q ss_pred -hcCCCcEEEEec-ccchhhhhhcccc-ccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHH
Q 003873 500 -KISKIPIICICN-DRYSQKLKSLVNY-CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571 (790)
Q Consensus 500 -~~s~~pII~I~n-d~~~~~l~~L~sR-~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~ 571 (790)
......|++++. ++....-..+++| +.+++..-|+..+..+||+-++..|.+. +.-.+..|+..+.|--.+
T Consensus 225 ~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGS 298 (386)
T KOG0737|consen 225 SSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGS 298 (386)
T ss_pred cCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHH
Confidence 123334555544 3344444555555 7789999999999999999999998876 333467788877664433
No 137
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.34 E-value=4.8e-11 Score=127.08 Aligned_cols=194 Identities=13% Similarity=0.169 Sum_probs=119.4
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCC-cEE--EE-eCCCCCCchhhhhhcccCCCc-----hh---HHHHHHHHhhhhc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGF-QAI--EV-NASDSRGKADAKISKGIGGSN-----AN---SIKELVSNEALSA 464 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~-~ii--Ei-naSd~rsk~~~~i~~~~g~s~-----~~---~i~e~l~~a~~~~ 464 (790)
...++|+||+|+||||+++.+++++.. .++ .+ ++..........+...+|... .. .+.+++....
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~--- 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF--- 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH---
Confidence 457999999999999999999999863 222 11 111110001112222222211 11 1222222211
Q ss_pred cccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcC--CCcEEEEecccchhh-----hhhcccc-ccccccCCCCHH
Q 003873 465 NMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKIS--KIPIICICNDRYSQK-----LKSLVNY-CSDLRFRKPRKQ 536 (790)
Q Consensus 465 ~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s--~~pII~I~nd~~~~~-----l~~L~sR-~~~I~F~~pt~~ 536 (790)
..+...||||||++.+.......+..+.+..... ..+||++........ +..+.+| +..+.+.+++.+
T Consensus 120 ----~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 120 ----AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred ----hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 1345579999999999865555555444432212 234556655433222 2345666 456889999999
Q ss_pred HHHHHHHHHHHHcC----CCCCHHHHHHHHHHccCCHHHHHHHHHHHH-----hcCCCCCHHHHHHHHHh
Q 003873 537 EIAKRLMQIANAEG----LEVNEIALEELADRVNGDIRMAINQLQYMS-----LSLSVIKYDDIRQRLLS 597 (790)
Q Consensus 537 ei~~iL~~I~~~Eg----i~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~-----~~~~~it~~~v~~~~~~ 597 (790)
++..++...+...+ ..+++++++.|++.++|++|.+..++..+. .+...|+.+.+...+..
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 99999998887655 368999999999999999999665554432 23567888888876644
No 138
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.33 E-value=1.2e-11 Score=151.42 Aligned_cols=207 Identities=15% Similarity=0.244 Sum_probs=136.9
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML- 421 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel- 421 (790)
...++++.+|..+++++|++..++.+...|.. ....++||+||||||||++|+.+|..+
T Consensus 165 ~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r--------------------~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 165 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR--------------------RTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred hhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhc--------------------CCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 34688999999999999999999999888877 234689999999999999999999988
Q ss_pred ---------CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--hh
Q 003873 422 ---------GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--RG 490 (790)
Q Consensus 422 ---------g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--~~ 490 (790)
++.++.++.+..-.. ....+.....++.++..... ...+.||||||+|.+.+.. .+
T Consensus 225 ~~~vp~~l~~~~~~~l~l~~l~ag------~~~~g~~e~~lk~~~~~~~~-------~~~~~ILfIDEih~l~~~~~~~~ 291 (857)
T PRK10865 225 NGEVPEGLKGRRVLALDMGALVAG------AKYRGEFEERLKGVLNDLAK-------QEGNVILFIDELHTMVGAGKADG 291 (857)
T ss_pred cCCCchhhCCCEEEEEehhhhhhc------cchhhhhHHHHHHHHHHHHH-------cCCCeEEEEecHHHhccCCCCcc
Confidence 677777766532100 00111112346666655321 2346799999999997531 11
Q ss_pred H--HHH-HHHHhhcCCCcEEEEeccc-c---hhhhhhccccccccccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHH
Q 003873 491 G--IAD-LIASIKISKIPIICICNDR-Y---SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA----EGLEVNEIALE 559 (790)
Q Consensus 491 ~--l~~-Ll~~i~~s~~pII~I~nd~-~---~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~----Egi~i~~~~l~ 559 (790)
. ... |...+......+|..+|.. + ..+-+.|.+||..|.+..|+.++...+|+.+..+ .++.++++++.
T Consensus 292 ~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~ 371 (857)
T PRK10865 292 AMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIV 371 (857)
T ss_pred chhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHH
Confidence 1 112 2223333444444444422 1 1234788999999999999999999988876543 25677888888
Q ss_pred HHHHHccC------CHHHHHHHHHHHHhc
Q 003873 560 ELADRVNG------DIRMAINQLQYMSLS 582 (790)
Q Consensus 560 ~Ia~~s~G------DiR~aIn~Lq~~~~~ 582 (790)
..+..+++ -...|+.++..++..
T Consensus 372 ~a~~ls~ry~~~~~~pdkAi~LiD~aaa~ 400 (857)
T PRK10865 372 AAATLSHRYIADRQLPDKAIDLIDEAASS 400 (857)
T ss_pred HHHHHhhccccCCCCChHHHHHHHHHhcc
Confidence 77665533 234466666555443
No 139
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.33 E-value=1.9e-11 Score=146.80 Aligned_cols=215 Identities=13% Similarity=0.207 Sum_probs=139.0
Q ss_pred hhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh----
Q 003873 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---- 421 (790)
Q Consensus 346 W~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---- 421 (790)
++++-+--.++.++|.+..++.+...|.. ....++||+||||||||++|+.+|..+
T Consensus 176 l~~~a~~g~~~~liGR~~ei~~~i~iL~r--------------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~ 235 (758)
T PRK11034 176 LNQLARVGGIDPLIGREKELERAIQVLCR--------------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGD 235 (758)
T ss_pred HHHHHHcCCCCcCcCCCHHHHHHHHHHhc--------------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 44445666788899999999999998886 234678999999999999999999875
Q ss_pred ------CCcEEEEeCCCCCCchhhhhh-cccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-----h
Q 003873 422 ------GFQAIEVNASDSRGKADAKIS-KGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-----R 489 (790)
Q Consensus 422 ------g~~iiEinaSd~rsk~~~~i~-~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-----~ 489 (790)
++.++.++.+.. +. ....+.....++.++.... ...+.||||||+|.+.+.. +
T Consensus 236 vP~~l~~~~~~~l~~~~l-------laG~~~~Ge~e~rl~~l~~~l~--------~~~~~ILfIDEIh~L~g~g~~~~g~ 300 (758)
T PRK11034 236 VPEVMADCTIYSLDIGSL-------LAGTKYRGDFEKRFKALLKQLE--------QDTNSILFIDEIHTIIGAGAASGGQ 300 (758)
T ss_pred CCchhcCCeEEeccHHHH-------hcccchhhhHHHHHHHHHHHHH--------hcCCCEEEeccHHHHhccCCCCCcH
Confidence 334444332211 10 0001111233455554432 1235699999999985421 1
Q ss_pred hHHHH-HHHHhhcCCCcEEEEeccc-c---hhhhhhccccccccccCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHH
Q 003873 490 GGIAD-LIASIKISKIPIICICNDR-Y---SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN----AEGLEVNEIALEE 560 (790)
Q Consensus 490 ~~l~~-Ll~~i~~s~~pII~I~nd~-~---~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~----~Egi~i~~~~l~~ 560 (790)
..+.. |...+...++.+|..+|.. + ...-+.|.+|+..|.+..|+.++...+|..+.. ..++.++++++..
T Consensus 301 ~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~ 380 (758)
T PRK11034 301 VDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRA 380 (758)
T ss_pred HHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHH
Confidence 11222 2233344455555555532 1 123477899999999999999999999997654 3478899999999
Q ss_pred HHHHccC------CHHHHHHHHHHHHhc---------CCCCCHHHHHHHH
Q 003873 561 LADRVNG------DIRMAINQLQYMSLS---------LSVIKYDDIRQRL 595 (790)
Q Consensus 561 Ia~~s~G------DiR~aIn~Lq~~~~~---------~~~it~~~v~~~~ 595 (790)
+++.+.. -+..+|.+|..+|.. ...++.+++.+.+
T Consensus 381 a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~ 430 (758)
T PRK11034 381 AVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_pred HHHHhhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHH
Confidence 8887643 234799999877642 2235666665544
No 140
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.33 E-value=5.4e-12 Score=136.75 Aligned_cols=105 Identities=24% Similarity=0.219 Sum_probs=73.9
Q ss_pred ceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccc------------hhhhhhccccccccccCCCCHHHHHH
Q 003873 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY------------SQKLKSLVNYCSDLRFRKPRKQEIAK 540 (790)
Q Consensus 473 ~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~------------~~~l~~L~sR~~~I~F~~pt~~ei~~ 540 (790)
+.||||||+|.|.-+...+|..++ +..-.|||++++++- +-....|+.||..|+-.|++.+++++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnral---Es~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~ 355 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRAL---ESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQ 355 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHH---TSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHh---cCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHH
Confidence 469999999999766655555544 567788877655432 22224789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHH
Q 003873 541 RLMQIANAEGLEVNEIALEELADRV-NGDIRMAINQLQYMS 580 (790)
Q Consensus 541 iL~~I~~~Egi~i~~~~l~~Ia~~s-~GDiR~aIn~Lq~~~ 580 (790)
+|...|..|++.+++++++.|+... ...+|.|+++|..+.
T Consensus 356 Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 356 ILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred HHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 9999999999999999999999865 678999999987653
No 141
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=1.6e-11 Score=134.99 Aligned_cols=168 Identities=14% Similarity=0.221 Sum_probs=114.3
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCcEEE--EeCCCCCCch---------hh-hhh-cc-----------------
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE--VNASDSRGKA---------DA-KIS-KG----------------- 444 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE--inaSd~rsk~---------~~-~i~-~~----------------- 444 (790)
..++++||+||+|+||+++|+.+|+.+.|.--. ..++..+..+ +. .+. ..
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 467999999999999999999999999774310 1111111000 00 000 00
Q ss_pred --c--------CCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccc
Q 003873 445 --I--------GGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY 514 (790)
Q Consensus 445 --~--------g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~ 514 (790)
- .....++|+++........ ..+.++|+|||++|.|+..+.+.|+++++ +.+...+++.++++.
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~----~~~~~kV~iI~~ae~m~~~AaNaLLKtLE--EPp~~t~fiL~t~~~ 172 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGT----HRGGARVVVLYPAEALNVAAANALLKTLE--EPPPGTVFLLVSARI 172 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCC----ccCCceEEEEechhhcCHHHHHHHHHHhc--CCCcCcEEEEEECCh
Confidence 0 1123567777776544332 24667899999999999988888888887 344444444444446
Q ss_pred hhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 003873 515 SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576 (790)
Q Consensus 515 ~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~L 576 (790)
..++++++|||..|.|.+|+.+++...|... + +++ .+.++..++|.+..++.++
T Consensus 173 ~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~--~~~--~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 173 DRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----G--VAD--ADALLAEAGGAPLAALALA 226 (342)
T ss_pred hhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----C--CCh--HHHHHHHcCCCHHHHHHHH
Confidence 7788999999999999999999999998752 3 333 2345677899999988776
No 142
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.6e-11 Score=140.81 Aligned_cols=221 Identities=22% Similarity=0.290 Sum_probs=136.1
Q ss_pred CCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCC
Q 003873 353 KTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432 (790)
Q Consensus 353 ~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd 432 (790)
.++.|+.|.+...+.++..+.. ...+... ... .....++.+||+||||||||++|+++|.+++.+++.+..++
T Consensus 239 v~~~diggl~~~k~~l~e~v~~-~~~~~e~-~~~-----~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~ 311 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIET-PLKRPEL-FRK-----LGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE 311 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHh-HhhChHH-HHh-----cCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH
Confidence 4678888877666666555543 1111110 000 11245679999999999999999999999999999999885
Q ss_pred CCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccch--------hHHHHHHHHhh--cC
Q 003873 433 SRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR--------GGIADLIASIK--IS 502 (790)
Q Consensus 433 ~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~--------~~l~~Ll~~i~--~s 502 (790)
.-+ .++|.+ ...++++|..+. ...++||||||+|.+..... ..+..++..+. ..
T Consensus 312 l~s-------k~vGes-ek~ir~~F~~A~--------~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~ 375 (494)
T COG0464 312 LLS-------KWVGES-EKNIRELFEKAR--------KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK 375 (494)
T ss_pred Hhc-------cccchH-HHHHHHHHHHHH--------cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc
Confidence 433 333333 346888888875 35678999999999976321 34445554442 22
Q ss_pred CCcEEEEecccchhhhh-hccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHccC----CHHHHH
Q 003873 503 KIPIICICNDRYSQKLK-SLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLE-VNEIALEELADRVNG----DIRMAI 573 (790)
Q Consensus 503 ~~pII~I~nd~~~~~l~-~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~-i~~~~l~~Ia~~s~G----DiR~aI 573 (790)
...|++|+.++....++ .+++ |+. .+.|.+|+..+...+++..+...... ..+-.++.|++.+.| ||..++
T Consensus 376 ~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~ 455 (494)
T COG0464 376 AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALV 455 (494)
T ss_pred cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHH
Confidence 23344444433444454 4444 543 48899999999999999888765554 345567777775544 444433
Q ss_pred HHHHHHHhc---CCCCCHHHHHHHHH
Q 003873 574 NQLQYMSLS---LSVIKYDDIRQRLL 596 (790)
Q Consensus 574 n~Lq~~~~~---~~~it~~~v~~~~~ 596 (790)
.-.-+.+.. ...++.+++..++.
T Consensus 456 ~ea~~~~~~~~~~~~~~~~~~~~a~~ 481 (494)
T COG0464 456 REAALEALREARRREVTLDDFLDALK 481 (494)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHH
Confidence 332222222 22455555555443
No 143
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.5e-11 Score=141.59 Aligned_cols=185 Identities=20% Similarity=0.362 Sum_probs=123.1
Q ss_pred CCccccCCHHHHHHHHHHHHhh--hhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCC
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHW--NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w--~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaS 431 (790)
+++||-|-++++.+|..-++.= +...+..|. ....++|||||||||||.+|+++|-++...++.+...
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssgl----------rkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGP 739 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGL----------RKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGP 739 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccc----------cccceeEEECCCCCchHHHHHHHHhhceeeEEeecCH
Confidence 6789999999999988877751 112222222 2346899999999999999999999999999888654
Q ss_pred CCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc-----cchhH-----HHHHHHHhh-
Q 003873 432 DSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA-----GDRGG-----IADLIASIK- 500 (790)
Q Consensus 432 d~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~-----~~~~~-----l~~Ll~~i~- 500 (790)
. .+..++|.+.. .++++|.++. ...++|||+||+|.+.+ +|.++ +..|+..+.
T Consensus 740 E-------LLNMYVGqSE~-NVR~VFerAR--------~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDg 803 (953)
T KOG0736|consen 740 E-------LLNMYVGQSEE-NVREVFERAR--------SAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDG 803 (953)
T ss_pred H-------HHHHHhcchHH-HHHHHHHHhh--------ccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhc
Confidence 3 56677776655 5999999876 56789999999999976 33343 233443332
Q ss_pred ---cCCCcEEEEecccchhhhh-hcc--cccccccc-CCCCHHH-HHHHHHHHHHHcCCCCCHHH-HHHHHHHcc
Q 003873 501 ---ISKIPIICICNDRYSQKLK-SLV--NYCSDLRF-RKPRKQE-IAKRLMQIANAEGLEVNEIA-LEELADRVN 566 (790)
Q Consensus 501 ---~s~~pII~I~nd~~~~~l~-~L~--sR~~~I~F-~~pt~~e-i~~iL~~I~~~Egi~i~~~~-l~~Ia~~s~ 566 (790)
.+..+|++|+.++...+++ +|+ .|+..+-+ .+....+ -..+|+.+-++ +.+++++ +.+||+.|.
T Consensus 804 ls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLdedVdL~eiAk~cp 876 (953)
T KOG0736|consen 804 LSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDEDVDLVEIAKKCP 876 (953)
T ss_pred ccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCCcCHHHHHhhCC
Confidence 2556788887766666774 444 35555444 4443333 33444444433 3444433 777888774
No 144
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.32 E-value=9.1e-11 Score=125.17 Aligned_cols=193 Identities=14% Similarity=0.112 Sum_probs=118.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhh-------c--c-c
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS-------A--N-M 466 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~-------~--~-~ 466 (790)
..++||+||||||||++|+.+|+.+|.+++.+++.......+ .+....+......+..++...... + . .
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~d-llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSD-LVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHH-HhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 468999999999999999999999999999998875322211 111111111111111221110000 0 0 0
Q ss_pred cCCCCCceEEEEecCCCCCccchhHHHHHHHHhh---------------cCCCcEEEEecccc----hhhhhhccccccc
Q 003873 467 DRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK---------------ISKIPIICICNDRY----SQKLKSLVNYCSD 527 (790)
Q Consensus 467 ~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~---------------~s~~pII~I~nd~~----~~~l~~L~sR~~~ 527 (790)
........+|+|||++.+....++.|..+++.-. .....||+++|... ......|.+||..
T Consensus 100 ~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~ 179 (262)
T TIGR02640 100 TLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLIT 179 (262)
T ss_pred HHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEE
Confidence 0001123599999999999888888888875311 01334777777532 1224678899999
Q ss_pred cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc----------CCHHHHHHHHHHHHhcC--CCCCHHHHHHHH
Q 003873 528 LRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN----------GDIRMAINQLQYMSLSL--SVIKYDDIRQRL 595 (790)
Q Consensus 528 I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~----------GDiR~aIn~Lq~~~~~~--~~it~~~v~~~~ 595 (790)
+.+..|+.++..++|...+ .++++.++.|++... -.+|.+|.+.+.+.... ..++.+++++.+
T Consensus 180 i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~ 254 (262)
T TIGR02640 180 IFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQDIPVDVDDEDFVDLC 254 (262)
T ss_pred EECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHH
Confidence 9999999999888888643 467777777776431 12677777766655442 345555555543
No 145
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1e-11 Score=129.42 Aligned_cols=193 Identities=16% Similarity=0.219 Sum_probs=115.5
Q ss_pred CCC-CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 351 RPK-TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 351 ~P~-sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
+|. ..+|+.|-+...+.|++.+-.=-+ |..-+.++. .+.+++||+||||+|||.||+++|-+.+..++.+.
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIK--FPqlFtGkR------~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIK--FPQLFTGKR------KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeeccc--chhhhcCCC------CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 454 678999999999999887653100 000111111 35689999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccch----hHHH----HHHHHh--
Q 003873 430 ASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR----GGIA----DLIASI-- 499 (790)
Q Consensus 430 aSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~----~~l~----~Ll~~i-- 499 (790)
.||.-++ ++|.+ ...++++|.-+. .+++.||||||||.|.+... .+.. +++-.+
T Consensus 199 SSDLvSK-------WmGES-EkLVknLFemAR--------e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqG 262 (439)
T KOG0739|consen 199 SSDLVSK-------WMGES-EKLVKNLFEMAR--------ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQG 262 (439)
T ss_pred hHHHHHH-------HhccH-HHHHHHHHHHHH--------hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhc
Confidence 8885444 44433 235677776654 46778999999998876321 1111 222111
Q ss_pred -hcCCCcEEEEecccchhhh-hhccccccc-cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Q 003873 500 -KISKIPIICICNDRYSQKL-KSLVNYCSD-LRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567 (790)
Q Consensus 500 -~~s~~pII~I~nd~~~~~l-~~L~sR~~~-I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G 567 (790)
-...--|++++..+..-.| ..+++|+.. |.++-|........++-.+-.-...+++..+.+|+..+.|
T Consensus 263 VG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739|consen 263 VGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEG 333 (439)
T ss_pred cccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCC
Confidence 1222233333332233334 556666654 5555444444333333222222234677778888877655
No 146
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.30 E-value=3.1e-11 Score=146.40 Aligned_cols=196 Identities=19% Similarity=0.287 Sum_probs=124.4
Q ss_pred CCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeC
Q 003873 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430 (790)
Q Consensus 351 ~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEina 430 (790)
...+++||.|.+..++.|+.++...... .. -... .+-..++++||+||||||||++|+++|++++..++.+++
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~-~~-~~~~-----~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~ 245 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKH-PE-LFEH-----LGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISING 245 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhC-HH-HHHh-----cCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEec
Confidence 3458999999999999999998753211 00 0000 112356899999999999999999999999999999988
Q ss_pred CCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--------hhHHHHHHHHhhc-
Q 003873 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--------RGGIADLIASIKI- 501 (790)
Q Consensus 431 Sd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--------~~~l~~Ll~~i~~- 501 (790)
++..++ .. +.....+..++..+. ...+.||||||+|.+.... ...+..|+..+..
T Consensus 246 ~~i~~~-------~~-g~~~~~l~~lf~~a~--------~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l 309 (733)
T TIGR01243 246 PEIMSK-------YY-GESEERLREIFKEAE--------ENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL 309 (733)
T ss_pred HHHhcc-------cc-cHHHHHHHHHHHHHH--------hcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc
Confidence 754322 11 122345666776653 2345799999999986521 1223344444321
Q ss_pred -CCCcEEEEecccchhhh-hhccc--cc-cccccCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHccCCHHH
Q 003873 502 -SKIPIICICNDRYSQKL-KSLVN--YC-SDLRFRKPRKQEIAKRLMQIANAEGLEVN-EIALEELADRVNGDIRM 571 (790)
Q Consensus 502 -s~~pII~I~nd~~~~~l-~~L~s--R~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~-~~~l~~Ia~~s~GDiR~ 571 (790)
....+++|+..+....+ +.+++ |+ ..+.|..|+.++...+|+..+. ++.+. +..++.|++.+.|-...
T Consensus 310 ~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 310 KGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLAEVTHGFVGA 383 (733)
T ss_pred ccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHHHhCCCCCHH
Confidence 23344444332233334 33433 33 3588999999999999886553 34443 34578888888775444
No 147
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.30 E-value=3e-11 Score=145.08 Aligned_cols=197 Identities=17% Similarity=0.251 Sum_probs=129.6
Q ss_pred cccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCc
Q 003873 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436 (790)
Q Consensus 357 dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk 436 (790)
.|+||+..++.|..++..|..... .. ..+...+||+||||||||++|+.+|+.++..++.+++++....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~-----~~------~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~ 527 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG-----HE------HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMER 527 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc-----CC------CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhccc
Confidence 489999999999999998643211 11 1234579999999999999999999999999999998865432
Q ss_pred hhhhhhcccCCC-------chhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh---------
Q 003873 437 ADAKISKGIGGS-------NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK--------- 500 (790)
Q Consensus 437 ~~~~i~~~~g~s-------~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~--------- 500 (790)
. .+...+|.. ....+.+.+. ..++.||||||||.+....++.+..+++.-.
T Consensus 528 ~--~~~~LiG~~~gyvg~~~~g~L~~~v~-----------~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~v 594 (758)
T PRK11034 528 H--TVSRLIGAPPGYVGFDQGGLLTDAVI-----------KHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKA 594 (758)
T ss_pred c--cHHHHcCCCCCcccccccchHHHHHH-----------hCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCcee
Confidence 1 122222211 0111222221 2345799999999999887777777776321
Q ss_pred -cCCCcEEEEecccch-----------------------h-hhhhcccccc-ccccCCCCHHHHHHHHHHHHH-------
Q 003873 501 -ISKIPIICICNDRYS-----------------------Q-KLKSLVNYCS-DLRFRKPRKQEIAKRLMQIAN------- 547 (790)
Q Consensus 501 -~s~~pII~I~nd~~~-----------------------~-~l~~L~sR~~-~I~F~~pt~~ei~~iL~~I~~------- 547 (790)
..++.||+++|.... . ..+.|++|+. +|.|++++.+++..++...+.
T Consensus 595 d~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~ 674 (758)
T PRK11034 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLD 674 (758)
T ss_pred cCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 123346666662100 0 1166778875 689999999999988876543
Q ss_pred HcC--CCCCHHHHHHHHHHcc---CCHHHHHHHHH
Q 003873 548 AEG--LEVNEIALEELADRVN---GDIRMAINQLQ 577 (790)
Q Consensus 548 ~Eg--i~i~~~~l~~Ia~~s~---GDiR~aIn~Lq 577 (790)
..+ +.+++++++.|++... --.|.+-+.++
T Consensus 675 ~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~ 709 (758)
T PRK11034 675 QKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_pred HCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHH
Confidence 234 4578999999997651 12444444444
No 148
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.30 E-value=6.9e-11 Score=126.24 Aligned_cols=119 Identities=21% Similarity=0.223 Sum_probs=91.4
Q ss_pred ceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccc------------hhhhhhccccccccccCCCCHHHHHH
Q 003873 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY------------SQKLKSLVNYCSDLRFRKPRKQEIAK 540 (790)
Q Consensus 473 ~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~------------~~~l~~L~sR~~~I~F~~pt~~ei~~ 540 (790)
+.||||||+|.|.-+...+|+..+ +..-.|||++++++- +-+...|+.|...|.-.|++.++++.
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAl---Ese~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~Eire 368 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRAL---ESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIRE 368 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHh---hcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHH
Confidence 569999999999766655555444 556788888765432 22235788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc-cCCHHHHHHHHH----HHHhc-CCCCCHHHHHHH
Q 003873 541 RLMQIANAEGLEVNEIALEELADRV-NGDIRMAINQLQ----YMSLS-LSVIKYDDIRQR 594 (790)
Q Consensus 541 iL~~I~~~Egi~i~~~~l~~Ia~~s-~GDiR~aIn~Lq----~~~~~-~~~it~~~v~~~ 594 (790)
+|...|..+++.+++++++.|+... .-.+|.++++|. .+... +..+..+++..+
T Consensus 369 Ii~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a 428 (450)
T COG1224 369 IIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERA 428 (450)
T ss_pred HHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHH
Confidence 9999999999999999999999865 568999999995 22222 446666666543
No 149
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.29 E-value=3.7e-11 Score=149.89 Aligned_cols=196 Identities=15% Similarity=0.211 Sum_probs=126.2
Q ss_pred ccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchh-----hhh--------h--------------c--
Q 003873 393 DASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKAD-----AKI--------S--------------K-- 443 (790)
Q Consensus 393 ~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~-----~~i--------~--------------~-- 443 (790)
+...++++||+||||||||.+|++||.+.+++++.+.+++...... ..+ . .
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhc
Confidence 3467899999999999999999999999999999998876432210 000 0 0
Q ss_pred -----ccCCC-chhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchh--HHHHHHHHhhc-----CCCcEEEEe
Q 003873 444 -----GIGGS-NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG--GIADLIASIKI-----SKIPIICIC 510 (790)
Q Consensus 444 -----~~g~s-~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~--~l~~Ll~~i~~-----s~~pII~I~ 510 (790)
.++.. ....++.++..|. ...++||+|||||.+...+.. .+..|+..+.. +...||+|+
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFelAR--------k~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIA 1777 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFELAK--------AMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIA 1777 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHH--------HCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEE
Confidence 00000 1112556666654 356799999999999875432 24556555532 234566666
Q ss_pred cccchhhh-hhccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHccC----CHHHHHHHHHHHH
Q 003873 511 NDRYSQKL-KSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEI--ALEELADRVNG----DIRMAINQLQYMS 580 (790)
Q Consensus 511 nd~~~~~l-~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~--~l~~Ia~~s~G----DiR~aIn~Lq~~~ 580 (790)
++.....+ ++|++ |+. .|.+..|+..+..+++..++...++.+.+. .++.||..+.| |+..++|-.-.++
T Consensus 1778 ATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliA 1857 (2281)
T CHL00206 1778 STHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSIS 1857 (2281)
T ss_pred eCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 65566666 44553 443 477888888777777765555556666543 37888888855 6666555554444
Q ss_pred hc--CCCCCHHHHHHHHH
Q 003873 581 LS--LSVIKYDDIRQRLL 596 (790)
Q Consensus 581 ~~--~~~it~~~v~~~~~ 596 (790)
.. ...|+.+++..++.
T Consensus 1858 irq~ks~Id~~~I~~Al~ 1875 (2281)
T CHL00206 1858 ITQKKSIIDTNTIRSALH 1875 (2281)
T ss_pred HHcCCCccCHHHHHHHHH
Confidence 43 46788888776653
No 150
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.2e-11 Score=127.06 Aligned_cols=217 Identities=19% Similarity=0.270 Sum_probs=134.6
Q ss_pred CCccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHH
Q 003873 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQ 419 (790)
Q Consensus 340 ~~~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAk 419 (790)
++-.++-++.---.+++|+-|.++++++|++.++. ..++... ....+-.+++.+|||||||+|||.+|+++|+
T Consensus 161 psvtmm~veekpdvty~dvggckeqieklrevve~---pll~per----fv~lgidppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 161 PSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVEL---PLLHPER----FVNLGIDPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred CceeEEEeecCCCcccccccchHHHHHHHHHHHhc---cccCHHH----HhhcCCCCCCceEEeCCCCCchhHHHHHHhc
Confidence 34455556655556899999999999999998875 1111100 0112335789999999999999999999999
Q ss_pred HhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc--------c---
Q 003873 420 MLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG--------D--- 488 (790)
Q Consensus 420 elg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~--------~--- 488 (790)
..+..+|.+-.|. .+.+++|.. ...++++|.-+. ..+-+|||+||||.+.+. +
T Consensus 234 rtdacfirvigse-------lvqkyvgeg-armvrelf~mar--------tkkaciiffdeidaiggarfddg~ggdnev 297 (435)
T KOG0729|consen 234 RTDACFIRVIGSE-------LVQKYVGEG-ARMVRELFEMAR--------TKKACIIFFDEIDAIGGARFDDGAGGDNEV 297 (435)
T ss_pred ccCceEEeehhHH-------HHHHHhhhh-HHHHHHHHHHhc--------ccceEEEEeeccccccCccccCCCCCcHHH
Confidence 9999898887664 344444432 345778777654 345689999999988651 1
Q ss_pred hhHHHHHHHHhh----cCCCcEEEEecccchhhhhhccc--c-ccccccCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHH
Q 003873 489 RGGIADLIASIK----ISKIPIICICNDRYSQKLKSLVN--Y-CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIA-LEE 560 (790)
Q Consensus 489 ~~~l~~Ll~~i~----~s~~pII~I~nd~~~~~l~~L~s--R-~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~-l~~ 560 (790)
+..+++|+..+. ..++.+++.+| +...+-+.|++ | -..+.|.-|+.+-...+++-.++. +.++.+. .+.
T Consensus 298 qrtmleli~qldgfdprgnikvlmatn-rpdtldpallrpgrldrkvef~lpdlegrt~i~kihaks--msverdir~el 374 (435)
T KOG0729|consen 298 QRTMLELINQLDGFDPRGNIKVLMATN-RPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS--MSVERDIRFEL 374 (435)
T ss_pred HHHHHHHHHhccCCCCCCCeEEEeecC-CCCCcCHhhcCCcccccceeccCCcccccceeEEEeccc--cccccchhHHH
Confidence 234555555543 23344555555 33333344442 2 223778878777666665543322 2333222 334
Q ss_pred HHHHc----cCCHHHHHHHHHHHHhc
Q 003873 561 LADRV----NGDIRMAINQLQYMSLS 582 (790)
Q Consensus 561 Ia~~s----~GDiR~aIn~Lq~~~~~ 582 (790)
|+..| +.++|++..-.-+++..
T Consensus 375 larlcpnstgaeirsvcteagmfair 400 (435)
T KOG0729|consen 375 LARLCPNSTGAEIRSVCTEAGMFAIR 400 (435)
T ss_pred HHhhCCCCcchHHHHHHHHhhHHHHH
Confidence 44444 44888877766655543
No 151
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.28 E-value=7e-11 Score=133.14 Aligned_cols=115 Identities=17% Similarity=0.295 Sum_probs=71.6
Q ss_pred ccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCch
Q 003873 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA 437 (790)
Q Consensus 358 LvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~ 437 (790)
|+||+.+++.|...+.+..+...... ... ........++||+||||||||++|+++|+.++.+++.++++.....
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~-~~~---~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~- 147 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGD-KKD---DDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA- 147 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhccc-ccc---cccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC-
Confidence 89999999999888765333221110 000 0001235789999999999999999999999999999988753211
Q ss_pred hhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc
Q 003873 438 DAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA 486 (790)
Q Consensus 438 ~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~ 486 (790)
.++|....+.+..++..+.... ....+.||||||||.+..
T Consensus 148 -----gyvG~d~e~~l~~l~~~~~~~~----~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 148 -----GYVGEDVENILLKLLQAADYDV----EKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred -----CcccchHHHHHHHHHHhccccH----HHcCCcEEEEechhhhcc
Confidence 1122211222333333221100 123467999999999975
No 152
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.2e-11 Score=137.40 Aligned_cols=198 Identities=20% Similarity=0.313 Sum_probs=133.8
Q ss_pred CCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCC
Q 003873 353 KTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432 (790)
Q Consensus 353 ~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd 432 (790)
.+|.|+.|+++.+++|.+.+.--... . + ....+...++.+||+||||+|||.+|+++|.+.+.+++.+..|+
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p-----~--k-y~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~ 218 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNP-----K--K-YQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 218 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCc-----h--h-hHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchh
Confidence 47999999999888887766642211 0 0 01123357899999999999999999999999999999998887
Q ss_pred CCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-----------hhHHHHHHHHhhc
Q 003873 433 SRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-----------RGGIADLIASIKI 501 (790)
Q Consensus 433 ~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-----------~~~l~~Ll~~i~~ 501 (790)
. ++-.+| .....+++++.++. +..++||||||+|.+.... ...+..|+-.+..
T Consensus 219 F-------VemfVG-vGAsRVRdLF~qAk--------k~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG 282 (596)
T COG0465 219 F-------VEMFVG-VGASRVRDLFEQAK--------KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 282 (596)
T ss_pred h-------hhhhcC-CCcHHHHHHHHHhh--------ccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc
Confidence 4 333333 33457888988875 4567999999999886522 1245555554443
Q ss_pred --CCCcEEEEecccchhhhh-hccc--c-ccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC----CHHH
Q 003873 502 --SKIPIICICNDRYSQKLK-SLVN--Y-CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG----DIRM 571 (790)
Q Consensus 502 --s~~pII~I~nd~~~~~l~-~L~s--R-~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G----DiR~ 571 (790)
.+.+||+|++++....+. +|++ | ...|....|+.....++|+-.++.-.+. +.-.+..|++.+.| |+-.
T Consensus 283 F~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~n 361 (596)
T COG0465 283 FGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLAN 361 (596)
T ss_pred CCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhh
Confidence 346888887776766664 4442 2 3457788899899999998555444433 11124447777755 4444
Q ss_pred HHHH
Q 003873 572 AINQ 575 (790)
Q Consensus 572 aIn~ 575 (790)
++|.
T Consensus 362 l~NE 365 (596)
T COG0465 362 LLNE 365 (596)
T ss_pred hHHH
Confidence 4433
No 153
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.27 E-value=6.6e-11 Score=144.58 Aligned_cols=201 Identities=16% Similarity=0.213 Sum_probs=135.6
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
+.|+||+..++.|..++..... +...+ ..+...+||+||+|||||.+|++||+.+ .-.++.++.++
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~-----gl~~~------~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse 634 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARA-----GLEDP------RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSE 634 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhc-----CCCCC------CCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHH
Confidence 4689999999999999987322 11111 1122368999999999999999999998 34678888775
Q ss_pred CCCchhhhhhcccCC-------CchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh-----
Q 003873 433 SRGKADAKISKGIGG-------SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK----- 500 (790)
Q Consensus 433 ~rsk~~~~i~~~~g~-------s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~----- 500 (790)
..... .+...+|. .....+.+.+. ..++.||+||||+.+.....+.|..+++.-.
T Consensus 635 ~~~~~--~~~~l~g~~~gyvg~~~~g~L~~~v~-----------~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~ 701 (852)
T TIGR03345 635 FQEAH--TVSRLKGSPPGYVGYGEGGVLTEAVR-----------RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGE 701 (852)
T ss_pred hhhhh--hhccccCCCCCcccccccchHHHHHH-----------hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCC
Confidence 43221 11111111 11112222222 2456799999999998877777777775321
Q ss_pred -----cCCCcEEEEecccc----------h-----h-------------hhhhccccccccccCCCCHHHHHHHHHHHHH
Q 003873 501 -----ISKIPIICICNDRY----------S-----Q-------------KLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547 (790)
Q Consensus 501 -----~s~~pII~I~nd~~----------~-----~-------------~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~ 547 (790)
..++.|||++|-.. . . ..+.|++|+..|.|++++.+++.+++...+.
T Consensus 702 Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 702 GREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred CcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHH
Confidence 24455666666210 0 0 1156789999999999999999988876543
Q ss_pred H--------cC--CCCCHHHHHHHHHHccC---CHHHHHHHHHHHH
Q 003873 548 A--------EG--LEVNEIALEELADRVNG---DIRMAINQLQYMS 580 (790)
Q Consensus 548 ~--------Eg--i~i~~~~l~~Ia~~s~G---DiR~aIn~Lq~~~ 580 (790)
. .+ +.+++++++.|++.+.+ +.|.+.+.|+...
T Consensus 782 ~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 782 RIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 2 14 45899999999999876 7999999987643
No 154
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.3e-10 Score=128.37 Aligned_cols=164 Identities=15% Similarity=0.217 Sum_probs=109.7
Q ss_pred cCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 350 YRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 350 Y~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
-.|.+|+-|+-.....+.|..=|..+-+. +.-.+..| ....|.+|||||||||||+++.++|++|+|+++.++
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~--k~~YkrvG-----kawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLe 267 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKG--KDFYKRVG-----KAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLE 267 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhc--chHHHhcC-----cchhccceeeCCCCCCHHHHHHHHHhhcCCceEEee
Confidence 36789999999998888888777764331 00112223 367899999999999999999999999999999998
Q ss_pred CCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc--c--------ch-----hHHHH
Q 003873 430 ASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA--G--------DR-----GGIAD 494 (790)
Q Consensus 430 aSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~--~--------~~-----~~l~~ 494 (790)
.+..... ..++.+|... ..+.||+|++||.-.. + .+ -.|.-
T Consensus 268 Lt~v~~n--------------~dLr~LL~~t----------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSG 323 (457)
T KOG0743|consen 268 LTEVKLD--------------SDLRHLLLAT----------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSG 323 (457)
T ss_pred eccccCc--------------HHHHHHHHhC----------CCCcEEEEeecccccccccccccccccccCCcceeehHH
Confidence 8765332 3477777663 4567999999997643 0 01 11333
Q ss_pred HHHHhh---cC---CCcEEEEecccchhhh-hhcccc--c-cccccCCCCHHHHHHHHHHHH
Q 003873 495 LIASIK---IS---KIPIICICNDRYSQKL-KSLVNY--C-SDLRFRKPRKQEIAKRLMQIA 546 (790)
Q Consensus 495 Ll~~i~---~s---~~pII~I~nd~~~~~l-~~L~sR--~-~~I~F~~pt~~ei~~iL~~I~ 546 (790)
|++.+. .+ ...||+++| +..+| ++|+++ . ..|.+...+...++....+.+
T Consensus 324 LLNfiDGlwSscg~ERIivFTTN--h~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL 383 (457)
T KOG0743|consen 324 LLNFLDGLWSSCGDERIIVFTTN--HKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYL 383 (457)
T ss_pred hhhhhccccccCCCceEEEEecC--ChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhc
Confidence 444443 22 233444555 44555 566653 2 237778888887777766654
No 155
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.2e-10 Score=132.94 Aligned_cols=205 Identities=20% Similarity=0.265 Sum_probs=131.7
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCC
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDS 433 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~ 433 (790)
..+||-|-.++++.|.+.|+ |...+..--.. ..-+...++|||||||||||.+|.++|..+++.+|.+....
T Consensus 665 ~w~digg~~~~k~~l~~~i~-~P~kyp~if~~------~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPE- 736 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIE-WPSKYPQIFAN------CPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPE- 736 (952)
T ss_pred CceecccHHHHHHHHHHHHh-ccccchHHHhh------CCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHH-
Confidence 46788886666655555444 33321111011 11245679999999999999999999999999999986653
Q ss_pred CCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc---ch-----hHHHHHHHHhh---cC
Q 003873 434 RGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG---DR-----GGIADLIASIK---IS 502 (790)
Q Consensus 434 rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~---~~-----~~l~~Ll~~i~---~s 502 (790)
.+.+++|.+. ..++++|.++. ..+++|||+||+|.+.+. |. ..+..|+-.+. .-
T Consensus 737 ------lL~KyIGaSE-q~vR~lF~rA~--------~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl 801 (952)
T KOG0735|consen 737 ------LLSKYIGASE-QNVRDLFERAQ--------SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL 801 (952)
T ss_pred ------HHHHHhcccH-HHHHHHHHHhh--------ccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc
Confidence 4556666554 35899998875 467899999999999762 21 23444554443 33
Q ss_pred CCcEEEEecccchhhhhhccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC----CHHHHHHH
Q 003873 503 KIPIICICNDRYSQKLKSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG----DIRMAINQ 575 (790)
Q Consensus 503 ~~pII~I~nd~~~~~l~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G----DiR~aIn~ 575 (790)
..-+|+.|+.+..-+-+.|++ |.. .+....|+..+...+|+.+....-+ -++-.++.|+..+.| |+..++..
T Consensus 802 ~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-~~~vdl~~~a~~T~g~tgADlq~ll~~ 880 (952)
T KOG0735|consen 802 DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-DTDVDLECLAQKTDGFTGADLQSLLYN 880 (952)
T ss_pred ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-ccccchHHHhhhcCCCchhhHHHHHHH
Confidence 334555555544333344442 322 2556778888888888877643322 234457778876644 88888877
Q ss_pred HHHHHhc
Q 003873 576 LQYMSLS 582 (790)
Q Consensus 576 Lq~~~~~ 582 (790)
.|+.+..
T Consensus 881 A~l~avh 887 (952)
T KOG0735|consen 881 AQLAAVH 887 (952)
T ss_pred HHHHHHH
Confidence 7777643
No 156
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=6.4e-11 Score=121.42 Aligned_cols=189 Identities=19% Similarity=0.318 Sum_probs=117.1
Q ss_pred CCC-CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 351 RPK-TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 351 ~P~-sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
+|+ +++||-|-++++++|.+.+-.--. + +.+. ...+-.+++.+|+|||||+|||.+|+++|.+.+..++.+-
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmt---h---~ekF-~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLA 237 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMT---H---KEKF-ENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLA 237 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccc---c---HHHH-HhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhc
Confidence 455 689999999999998877654100 0 0000 1123357899999999999999999999999887766554
Q ss_pred CCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc--------cch---hHHHHHHHH
Q 003873 430 ASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA--------GDR---GGIADLIAS 498 (790)
Q Consensus 430 aSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~--------~~~---~~l~~Ll~~ 498 (790)
... .+..++|. ....+++.|.-+. ...+.||||||+|.+.. +++ ..+++|++.
T Consensus 238 gPQ-------LVQMfIGd-GAkLVRDAFaLAK--------EkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ 301 (424)
T KOG0652|consen 238 GPQ-------LVQMFIGD-GAKLVRDAFALAK--------EKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 301 (424)
T ss_pred chH-------HHhhhhcc-hHHHHHHHHHHhh--------ccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh
Confidence 331 22223332 2334555555443 45678999999998854 233 345555555
Q ss_pred hh----cCCCcEEEEecccchhhhhh-ccc--c-ccccccCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcc
Q 003873 499 IK----ISKIPIICICNDRYSQKLKS-LVN--Y-CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIA-LEELADRVN 566 (790)
Q Consensus 499 i~----~s~~pII~I~nd~~~~~l~~-L~s--R-~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~-l~~Ia~~s~ 566 (790)
+. ..++.||..+| ...++.+ |++ | -..|.|+-|+.+....+|+-..++.++ ++++ .++|++.++
T Consensus 302 LDGFss~~~vKviAATN--RvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv--~~DvNfeELaRsTd 374 (424)
T KOG0652|consen 302 LDGFSSDDRVKVIAATN--RVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV--SDDVNFEELARSTD 374 (424)
T ss_pred hcCCCCccceEEEeecc--cccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC--CCCCCHHHHhhccc
Confidence 53 22334554454 4455543 332 2 234899999988888887766655443 3332 566776663
No 157
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1e-10 Score=134.63 Aligned_cols=200 Identities=18% Similarity=0.276 Sum_probs=131.1
Q ss_pred cccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCc
Q 003873 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436 (790)
Q Consensus 357 dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk 436 (790)
|=.|-+++.+.+.++|.-.... ..-...+++|+||||+|||++++.+|+.+|-.|+.+.....|..
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~--------------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDE 389 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT--------------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDE 389 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh--------------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccH
Confidence 3456678888888888762211 11234799999999999999999999999999999987655432
Q ss_pred hhhhh--hcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccch----hHHHHHHHHh-----------
Q 003873 437 ADAKI--SKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR----GGIADLIASI----------- 499 (790)
Q Consensus 437 ~~~~i--~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~----~~l~~Ll~~i----------- 499 (790)
...+= ..++|.-.. .|-+-+..+ ...+.|++|||||.|+..-+ .+|+++++--
T Consensus 390 AEIRGHRRTYIGamPG-rIiQ~mkka---------~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLe 459 (782)
T COG0466 390 AEIRGHRRTYIGAMPG-KIIQGMKKA---------GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLE 459 (782)
T ss_pred HHhccccccccccCCh-HHHHHHHHh---------CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhcccc
Confidence 21000 112333222 333333332 23456999999999987544 4566665311
Q ss_pred ---hcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHH-----HHHcC-----CCCCHHHHHHHHHHc-
Q 003873 500 ---KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQI-----ANAEG-----LEVNEIALEELADRV- 565 (790)
Q Consensus 500 ---~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I-----~~~Eg-----i~i~~~~l~~Ia~~s- 565 (790)
.-+++-+||++|. ...+..+|+.|..+|++..++.++-..+.++. ....| +.++++++..|++..
T Consensus 460 v~yDLS~VmFiaTANs-l~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YT 538 (782)
T COG0466 460 VPYDLSKVMFIATANS-LDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYT 538 (782)
T ss_pred CccchhheEEEeecCc-cccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHh
Confidence 1234445555553 44566899999999999999999887776653 33334 458999999999876
Q ss_pred -cCCHHHHHHHHHHHHh
Q 003873 566 -NGDIRMAINQLQYMSL 581 (790)
Q Consensus 566 -~GDiR~aIn~Lq~~~~ 581 (790)
..-+|.+=..|..+|.
T Consensus 539 REAGVR~LeR~i~ki~R 555 (782)
T COG0466 539 REAGVRNLEREIAKICR 555 (782)
T ss_pred HhhhhhHHHHHHHHHHH
Confidence 2346666556555553
No 158
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.4e-10 Score=132.90 Aligned_cols=200 Identities=19% Similarity=0.290 Sum_probs=132.2
Q ss_pred cccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCc
Q 003873 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436 (790)
Q Consensus 357 dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk 436 (790)
|=-|-+++++.|.++|.--. ..+....+++.|+||||+|||++++.||+.||-.|+.+.....+.-
T Consensus 412 DHYgm~dVKeRILEfiAV~k--------------Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDv 477 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGK--------------LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDV 477 (906)
T ss_pred cccchHHHHHHHHHHHHHHh--------------hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccH
Confidence 45567788888888887611 1223456899999999999999999999999999999875432211
Q ss_pred hhhh-h-hcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccch----hHHHHHHHHh-----------
Q 003873 437 ADAK-I-SKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR----GGIADLIASI----------- 499 (790)
Q Consensus 437 ~~~~-i-~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~----~~l~~Ll~~i----------- 499 (790)
.+.. . ..++| .....+-+-|... ...+.+++|||||.+..+-+ .+|+++++--
T Consensus 478 AeIkGHRRTYVG-AMPGkiIq~LK~v---------~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLd 547 (906)
T KOG2004|consen 478 AEIKGHRRTYVG-AMPGKIIQCLKKV---------KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLD 547 (906)
T ss_pred Hhhcccceeeec-cCChHHHHHHHhh---------CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccc
Confidence 1000 0 11122 2223344444442 23446999999999986433 4566666311
Q ss_pred ---hcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHHc-
Q 003873 500 ---KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN-----A-----EGLEVNEIALEELADRV- 565 (790)
Q Consensus 500 ---~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~-----~-----Egi~i~~~~l~~Ia~~s- 565 (790)
.-+++-+||++|. ...+-++|+.|...|.+..+..++-.++.++.+. . +.+++++.++..|++..
T Consensus 548 Vp~DLSkVLFicTAN~-idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Yc 626 (906)
T KOG2004|consen 548 VPVDLSKVLFICTANV-IDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYC 626 (906)
T ss_pred cccchhheEEEEeccc-cccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHH
Confidence 2345556666664 4455589999999999999999988877766432 2 34568999998888765
Q ss_pred -cCCHHHHHHHHHHHHh
Q 003873 566 -NGDIRMAINQLQYMSL 581 (790)
Q Consensus 566 -~GDiR~aIn~Lq~~~~ 581 (790)
..-+|.+-..++.+|.
T Consensus 627 rEaGVRnLqk~iekI~R 643 (906)
T KOG2004|consen 627 REAGVRNLQKQIEKICR 643 (906)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 2346776666666554
No 159
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=5.3e-10 Score=122.65 Aligned_cols=137 Identities=15% Similarity=0.316 Sum_probs=99.0
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCc-------------------------EEEEeCCC---CCCchhhhhhcccC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQ-------------------------AIEVNASD---SRGKADAKISKGIG 446 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~-------------------------iiEinaSd---~rsk~~~~i~~~~g 446 (790)
..++++||+||+|+|||++|+.+|+.+.|. ++++.+.. ..++. ..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~-------~~ 91 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRK-------LL 91 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccccccccc-------CC
Confidence 467899999999999999999999998653 22222210 00000 00
Q ss_pred CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhcccccc
Q 003873 447 GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCS 526 (790)
Q Consensus 447 ~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~ 526 (790)
....++++++.......+. .+.++|+|||++++|....++.+..+++... ..+.+|+++.+ ....++++++||.
T Consensus 92 ~I~id~iR~l~~~~~~~p~----~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~-~~~ll~ti~SRc~ 165 (325)
T PRK08699 92 QIKIDAVREIIDNVYLTSV----RGGLRVILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHA-ADKVLPTIKSRCR 165 (325)
T ss_pred CcCHHHHHHHHHHHhhCcc----cCCceEEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCC-hHhChHHHHHHhh
Confidence 1235778887776654332 4567899999999999988888888887643 34556665554 4567789999999
Q ss_pred ccccCCCCHHHHHHHHHH
Q 003873 527 DLRFRKPRKQEIAKRLMQ 544 (790)
Q Consensus 527 ~I~F~~pt~~ei~~iL~~ 544 (790)
.+.|.+++.+++...|..
T Consensus 166 ~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 166 KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hhcCCCCCHHHHHHHHHh
Confidence 999999999999988864
No 160
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=1.9e-10 Score=123.22 Aligned_cols=155 Identities=12% Similarity=0.095 Sum_probs=106.1
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCC--CCCCchhh-hhhcccC--CCchhHHHHHHHHhhhhccccCC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS--DSRGKADA-KISKGIG--GSNANSIKELVSNEALSANMDRS 469 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaS--d~rsk~~~-~i~~~~g--~s~~~~i~e~l~~a~~~~~~~~~ 469 (790)
..++++||+||.|+||+++|..+|+.+.|.-..-.|. ......|. .+..... ....+.++++.......+ .
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p----~ 92 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHP----Y 92 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCc----c
Confidence 4679999999999999999999999986631000000 00000000 0100000 023566777766654433 2
Q ss_pred CCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHc
Q 003873 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAE 549 (790)
Q Consensus 470 ~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~E 549 (790)
.+.++|+|||++|.|+..+.++++.+++ +.+...+++++++.....+++++|||..+.|.++ +
T Consensus 93 e~~~kv~ii~~ad~mt~~AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~---------------~ 155 (290)
T PRK05917 93 ESPYKIYIIHEADRMTLDAISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME---------------E 155 (290)
T ss_pred CCCceEEEEechhhcCHHHHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHhcceEEEccch---------------h
Confidence 4677899999999999999999888888 4444445555555577888999999999999886 2
Q ss_pred CCCCCHHHHHHHHHHccCCHH
Q 003873 550 GLEVNEIALEELADRVNGDIR 570 (790)
Q Consensus 550 gi~i~~~~l~~Ia~~s~GDiR 570 (790)
...++++.+..++..+.|+++
T Consensus 156 ~~~i~~~~~~~l~~~~~g~~~ 176 (290)
T PRK05917 156 KTLVSKEDIAYLIGYAQGKES 176 (290)
T ss_pred ccCCCHHHHHHHHHHhCCChh
Confidence 224788889999999999886
No 161
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.22 E-value=1.8e-10 Score=139.41 Aligned_cols=201 Identities=19% Similarity=0.254 Sum_probs=130.4
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG 435 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rs 435 (790)
+.|+||+..++.|..++..... +...+ ..+..++||+||+|||||++|++||+.++..++.+++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~-----g~~~~------~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~ 522 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRA-----GLGNP------NKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYME 522 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhc-----CCCCC------CCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhh
Confidence 4589999999999999886321 11111 123346899999999999999999999999999999887543
Q ss_pred ch--hhhhhc---ccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh----------
Q 003873 436 KA--DAKISK---GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK---------- 500 (790)
Q Consensus 436 k~--~~~i~~---~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~---------- 500 (790)
.. ...+.. ++|-.....+.+.+. ..++.||||||+|.+....++.|..+++.-.
T Consensus 523 ~~~~~~lig~~~gyvg~~~~~~l~~~~~-----------~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd 591 (731)
T TIGR02639 523 KHTVSRLIGAPPGYVGFEQGGLLTEAVR-----------KHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKAD 591 (731)
T ss_pred cccHHHHhcCCCCCcccchhhHHHHHHH-----------hCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccC
Confidence 21 111111 011111112222222 2356899999999999887787777776321
Q ss_pred cCCCcEEEEecccch-----------------------h-hhhhcccccc-ccccCCCCHHHHHHHHHHHHHH-------
Q 003873 501 ISKIPIICICNDRYS-----------------------Q-KLKSLVNYCS-DLRFRKPRKQEIAKRLMQIANA------- 548 (790)
Q Consensus 501 ~s~~pII~I~nd~~~-----------------------~-~l~~L~sR~~-~I~F~~pt~~ei~~iL~~I~~~------- 548 (790)
..++.||+++|-... . ..+.|++|+. +|.|++++.+++.+++...+..
T Consensus 592 ~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~ 671 (731)
T TIGR02639 592 FRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNE 671 (731)
T ss_pred CCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 123335555553110 0 1246778875 6899999999999998877652
Q ss_pred cC--CCCCHHHHHHHHHHc---cCCHHHHHHHHHH
Q 003873 549 EG--LEVNEIALEELADRV---NGDIRMAINQLQY 578 (790)
Q Consensus 549 Eg--i~i~~~~l~~Ia~~s---~GDiR~aIn~Lq~ 578 (790)
.+ +.+++++++.|++.+ .-..|.+-..++.
T Consensus 672 ~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~ 706 (731)
T TIGR02639 672 KNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQE 706 (731)
T ss_pred CCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHH
Confidence 22 568999999999865 2235555555543
No 162
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=6.7e-11 Score=124.35 Aligned_cols=145 Identities=21% Similarity=0.294 Sum_probs=98.9
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCC
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDS 433 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~ 433 (790)
+|+.+-|--.++.+|++-+.---. +.. .....+-..+++++||||||+|||.+|+++|..+|++++-+.++..
T Consensus 130 s~~~~ggl~~qirelre~ielpl~---np~----lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~l 202 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLT---NPE----LFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSAL 202 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeecc---Cch----hccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhh
Confidence 788888888888888777664111 100 0011233578999999999999999999999999999999988753
Q ss_pred CCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc--------cchh---HHHHHHHHhh--
Q 003873 434 RGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA--------GDRG---GIADLIASIK-- 500 (790)
Q Consensus 434 rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~--------~~~~---~l~~Ll~~i~-- 500 (790)
-+ .++| .....|++.+..+. ...++||||||||.+.+ .++. .|.+|++.+.
T Consensus 203 v~-------kyiG-EsaRlIRemf~yA~--------~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgf 266 (388)
T KOG0651|consen 203 VD-------KYIG-ESARLIRDMFRYAR--------EVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGF 266 (388)
T ss_pred hh-------hhcc-cHHHHHHHHHHHHh--------hhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccc
Confidence 22 2333 23446778777764 45569999999998764 2333 3444444332
Q ss_pred --cCCCcEEEEecccchhhhhhcc
Q 003873 501 --ISKIPIICICNDRYSQKLKSLV 522 (790)
Q Consensus 501 --~s~~pII~I~nd~~~~~l~~L~ 522 (790)
..++|+||++|+ +..+-++|+
T Consensus 267 d~l~rVk~ImatNr-pdtLdpaLl 289 (388)
T KOG0651|consen 267 DTLHRVKTIMATNR-PDTLDPALL 289 (388)
T ss_pred hhcccccEEEecCC-ccccchhhc
Confidence 467899999996 333334444
No 163
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.21 E-value=2.8e-10 Score=126.48 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=53.4
Q ss_pred cccCCHHHHHHHHHHHHh-hhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCC
Q 003873 357 EIVGNQQLVKQLHTWLAH-WNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432 (790)
Q Consensus 357 dLvG~e~~i~~L~~wL~~-w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd 432 (790)
.|+||+..++.|..|+.+ |.......+. .....++++||+||||||||++|+.||+.++.+++.++++.
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~-------~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~ 85 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEEL-------RDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCccc-------ccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchh
Confidence 399999999999999965 5443221111 11123588999999999999999999999999999998863
No 164
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.18 E-value=1.7e-10 Score=109.06 Aligned_cols=139 Identities=22% Similarity=0.295 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCc
Q 003873 360 GNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGK 436 (790)
Q Consensus 360 G~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk 436 (790)
|++..+..+..++.. ...++++|+||||||||++++.+++.+ +..++.+++......
T Consensus 2 ~~~~~~~~i~~~~~~--------------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~ 61 (151)
T cd00009 2 GQEEAIEALREALEL--------------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG 61 (151)
T ss_pred chHHHHHHHHHHHhC--------------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhh
Confidence 566777777777765 235789999999999999999999998 888998887754332
Q ss_pred hhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh-----cCCCcEEEEec
Q 003873 437 ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK-----ISKIPIICICN 511 (790)
Q Consensus 437 ~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~-----~s~~pII~I~n 511 (790)
..... .+.......... ........+|||||++.+.......+..+++.+. ...+++|++++
T Consensus 62 ~~~~~----------~~~~~~~~~~~~---~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~ 128 (151)
T cd00009 62 LVVAE----------LFGHFLVRLLFE---LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATN 128 (151)
T ss_pred hHHHH----------HhhhhhHhHHHH---hhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecC
Confidence 11000 000000000000 0012346799999999996655566666666553 25678888888
Q ss_pred ccch-hhhhhccccc-cccccC
Q 003873 512 DRYS-QKLKSLVNYC-SDLRFR 531 (790)
Q Consensus 512 d~~~-~~l~~L~sR~-~~I~F~ 531 (790)
+... .....+.+|+ ..+.|.
T Consensus 129 ~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 129 RPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ccccCCcChhHHhhhccEeecC
Confidence 6554 3446677887 455554
No 165
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=3.7e-10 Score=124.66 Aligned_cols=211 Identities=19% Similarity=0.211 Sum_probs=141.0
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC-
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG- 422 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg- 422 (790)
.....-|.| .-++|.+.....++.|+.... +......+.++|-||+|||.+..-+...+.
T Consensus 141 ~~l~~t~~p---~~l~gRe~e~~~v~~F~~~hl----------------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~ 201 (529)
T KOG2227|consen 141 ESLLNTAPP---GTLKGRELEMDIVREFFSLHL----------------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSK 201 (529)
T ss_pred HHHHhcCCC---CCccchHHHHHHHHHHHHhhh----------------hcccCcceEeeCCCCcchHHHHHHHHHhhhh
Confidence 344555566 557899999999999998721 123467899999999999999987766553
Q ss_pred ----CcEEEEeCCCCCCchh------hhhhcc-cCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhH
Q 003873 423 ----FQAIEVNASDSRGKAD------AKISKG-IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG 491 (790)
Q Consensus 423 ----~~iiEinaSd~rsk~~------~~i~~~-~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~ 491 (790)
...+++||........ ..+... .+.....++.+.|...... ....-||++||+|.|....+..
T Consensus 202 ~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q------~k~~~llVlDEmD~L~tr~~~v 275 (529)
T KOG2227|consen 202 SSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQ------SKFMLLLVLDEMDHLITRSQTV 275 (529)
T ss_pred hcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhc------ccceEEEEechhhHHhhcccce
Confidence 3568899875433211 111111 1111111222223221110 1245689999999999888888
Q ss_pred HHHHHHHhhcCCC--cEEEEec--ccchhhhhhccccc----cccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 003873 492 IADLIASIKISKI--PIICICN--DRYSQKLKSLVNYC----SDLRFRKPRKQEIAKRLMQIANAEGLE-VNEIALEELA 562 (790)
Q Consensus 492 l~~Ll~~i~~s~~--pII~I~n--d~~~~~l~~L~sR~----~~I~F~~pt~~ei~~iL~~I~~~Egi~-i~~~~l~~Ia 562 (790)
+..|+++-..... .+|.|+| |...+.|+.|..++ ..+.|.|++.++|..||...+..+... +-+.+++.+|
T Consensus 276 Ly~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~A 355 (529)
T KOG2227|consen 276 LYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCA 355 (529)
T ss_pred eeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 9998887654444 4445666 34455667776654 359999999999999999887766544 4456788777
Q ss_pred HHc---cCCHHHHHHHHHHH
Q 003873 563 DRV---NGDIRMAINQLQYM 579 (790)
Q Consensus 563 ~~s---~GDiR~aIn~Lq~~ 579 (790)
... .||+|.|+..++.+
T Consensus 356 rKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 356 RKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred HHhccCchhHHHHHHHHHHH
Confidence 643 79999999998754
No 166
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.17 E-value=7.2e-10 Score=123.16 Aligned_cols=69 Identities=23% Similarity=0.369 Sum_probs=53.1
Q ss_pred cccCCHHHHHHHHHHHHh-hhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCC
Q 003873 357 EIVGNQQLVKQLHTWLAH-WNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432 (790)
Q Consensus 357 dLvG~e~~i~~L~~wL~~-w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd 432 (790)
-|+||++.++.|...+.+ |....+... ..+...++++||+||||||||++|++||+.++.+++.++++.
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~-------~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~ 82 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEE-------LKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 82 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccc-------cccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecce
Confidence 489999999999888875 544321111 011234689999999999999999999999999999998763
No 167
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.7e-10 Score=126.68 Aligned_cols=202 Identities=17% Similarity=0.164 Sum_probs=133.9
Q ss_pred hhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 348 EKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 348 eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
+.-++..++|+.|.+...+.+...+.- .-.. ...+ ..-....+.+||.||||+|||.++++||-|.+..++.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~-p~lr-~d~F------~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~ 216 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVIL-PLLR-PDLF------LGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFN 216 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhh-cccc-hHhh------hccccccchhheecCCCCchHHHHHHHHhhhcceEee
Confidence 455678889999987777766665542 1100 0000 0112467899999999999999999999999999999
Q ss_pred EeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc---------hhHHHHHHHH
Q 003873 428 VNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD---------RGGIADLIAS 498 (790)
Q Consensus 428 inaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~---------~~~l~~Ll~~ 498 (790)
+.++...+++ +|.. ...++.+|.-+. ...+.||||||+|.++... +-....|++.
T Consensus 217 iSassLtsK~-------~Ge~-eK~vralf~vAr--------~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~ 280 (428)
T KOG0740|consen 217 ISASSLTSKY-------VGES-EKLVRALFKVAR--------SLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQF 280 (428)
T ss_pred ccHHHhhhhc-------cChH-HHHHHHHHHHHH--------hcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhh
Confidence 9998765543 3333 344666665554 3567899999999987521 1122233333
Q ss_pred hh---cCCCcEEEEecccchhhh-hhcccccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc----CCH
Q 003873 499 IK---ISKIPIICICNDRYSQKL-KSLVNYCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN----GDI 569 (790)
Q Consensus 499 i~---~s~~pII~I~nd~~~~~l-~~L~sR~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~----GDi 569 (790)
.- ...-.|++|+.++...-+ ..+++|+. .+.++.|+.+....++.+.+...+..+.+..+..|++.+. +||
T Consensus 281 ~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi 360 (428)
T KOG0740|consen 281 DGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDI 360 (428)
T ss_pred ccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccH
Confidence 32 222245555544444333 44555544 4668889999999999999888888888889999998774 466
Q ss_pred HHHH
Q 003873 570 RMAI 573 (790)
Q Consensus 570 R~aI 573 (790)
.+++
T Consensus 361 ~~l~ 364 (428)
T KOG0740|consen 361 TALC 364 (428)
T ss_pred HHHH
Confidence 5543
No 168
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.16 E-value=5.3e-10 Score=125.54 Aligned_cols=116 Identities=21% Similarity=0.295 Sum_probs=70.8
Q ss_pred ccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCc-cCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCc
Q 003873 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQND-ASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436 (790)
Q Consensus 358 LvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~-~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk 436 (790)
++||+.+++.|...+.+.++........ .. ..+ .....++||+||||||||++|++||+.++.+++.++++.....
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~-~~--~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~ 155 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNK-KS--DNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEA 155 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhcccccc-cc--ccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccc
Confidence 7999999999988886644332110000 00 000 0124689999999999999999999999999988887643110
Q ss_pred hhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc
Q 003873 437 ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA 486 (790)
Q Consensus 437 ~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~ 486 (790)
.++|....+.+..++....... ....+.||||||+|.+..
T Consensus 156 ------gyvG~d~e~~L~~~~~~~~~~l----~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 156 ------GYVGEDVENILLKLLQAADYDV----EKAQKGIIYIDEIDKISR 195 (413)
T ss_pred ------ccccccHHHHHHHHHHhCcccH----HhcccceEEecccchhch
Confidence 1122212233344433221110 123456999999999875
No 169
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.15 E-value=2.3e-09 Score=111.30 Aligned_cols=192 Identities=20% Similarity=0.262 Sum_probs=123.2
Q ss_pred hhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CC
Q 003873 347 TEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GF 423 (790)
Q Consensus 347 ~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~ 423 (790)
+....|..+++|+|-+.+++.|..-...+-. +.+.+++||+|++|||||++++++..++ |+
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~----------------G~pannvLL~G~rGtGKSSlVkall~~y~~~GL 81 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQ----------------GLPANNVLLWGARGTGKSSLVKALLNEYADQGL 81 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHc----------------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCc
Confidence 3455688899999999988888776665321 2357899999999999999999999877 78
Q ss_pred cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--hhHHHHHHHHh--
Q 003873 424 QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--RGGIADLIASI-- 499 (790)
Q Consensus 424 ~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--~~~l~~Ll~~i-- 499 (790)
.+||+...+.. .+.+++..... ...+-|||+|++- +...+ ...|..+++--
T Consensus 82 RlIev~k~~L~-----------------~l~~l~~~l~~-------~~~kFIlf~DDLs-Fe~~d~~yk~LKs~LeGgle 136 (249)
T PF05673_consen 82 RLIEVSKEDLG-----------------DLPELLDLLRD-------RPYKFILFCDDLS-FEEGDTEYKALKSVLEGGLE 136 (249)
T ss_pred eEEEECHHHhc-----------------cHHHHHHHHhc-------CCCCEEEEecCCC-CCCCcHHHHHHHHHhcCccc
Confidence 99999766532 23333333221 3346799999865 22222 23444555421
Q ss_pred hcCCCcEEEEecccch-------h-------hh---------hhccccc-cccccCCCCHHHHHHHHHHHHHHcCCCCCH
Q 003873 500 KISKIPIICICNDRYS-------Q-------KL---------KSLVNYC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNE 555 (790)
Q Consensus 500 ~~s~~pII~I~nd~~~-------~-------~l---------~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~ 555 (790)
..+...+|+.++++.+ . -+ -+|..|+ ..|.|.+++.++..+++...+.+.|+.+++
T Consensus 137 ~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~ 216 (249)
T PF05673_consen 137 ARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDE 216 (249)
T ss_pred cCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 1233334444332211 0 01 1244454 359999999999999999999999999996
Q ss_pred HHHHHHH-----HHccCCHHHHHHHHHHH
Q 003873 556 IALEELA-----DRVNGDIRMAINQLQYM 579 (790)
Q Consensus 556 ~~l~~Ia-----~~s~GDiR~aIn~Lq~~ 579 (790)
+.+..-| .+.+.+-|.|-..+..+
T Consensus 217 e~l~~~Al~wa~~rg~RSGRtA~QF~~~l 245 (249)
T PF05673_consen 217 EELRQEALQWALRRGGRSGRTARQFIDDL 245 (249)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5444333 23334666665554444
No 170
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.15 E-value=7e-10 Score=127.41 Aligned_cols=208 Identities=19% Similarity=0.269 Sum_probs=139.2
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh----------CCcE
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML----------GFQA 425 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel----------g~~i 425 (790)
+-|-+.+....+|..+++.... +.....++.|+|-||+|||.+++.+-++| -|.+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~---------------~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y 460 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFIS---------------DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY 460 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcC---------------CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE
Confidence 3456677888888888887321 11234599999999999999999998876 4789
Q ss_pred EEEeCCCCCCchh--hhhhcccCCCch--hHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh-
Q 003873 426 IEVNASDSRGKAD--AKISKGIGGSNA--NSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK- 500 (790)
Q Consensus 426 iEinaSd~rsk~~--~~i~~~~g~s~~--~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~- 500 (790)
+|+|+--..+... ..|...+.+... ..--+.|.. ++.........+||+|||+|.|....|..+..++++..
T Consensus 461 veINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~---~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~ 537 (767)
T KOG1514|consen 461 VEINGLRLASPREIYEKIWEALSGERVTWDAALEALNF---RFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTL 537 (767)
T ss_pred EEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHH---hhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcC
Confidence 9999876554321 122222222221 111112221 11122335667899999999999988999999999864
Q ss_pred -cCCCcEEEEeccc--chhhhh-hcccc--ccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---ccCCHHH
Q 003873 501 -ISKIPIICICNDR--YSQKLK-SLVNY--CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR---VNGDIRM 571 (790)
Q Consensus 501 -~s~~pII~I~nd~--~~~~l~-~L~sR--~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~---s~GDiR~ 571 (790)
.++..||+|+|+. ....+. ..-+| ...+.|.|++.+++..++...+.-. -.+...+++.++.. ..||.|+
T Consensus 538 ~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRr 616 (767)
T KOG1514|consen 538 KNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARR 616 (767)
T ss_pred CCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHH
Confidence 5555677777743 233332 23344 4569999999999999988665332 24677777777764 3799999
Q ss_pred HHHHHHHHHhc
Q 003873 572 AINQLQYMSLS 582 (790)
Q Consensus 572 aIn~Lq~~~~~ 582 (790)
|+..+..+...
T Consensus 617 aldic~RA~Ei 627 (767)
T KOG1514|consen 617 ALDICRRAAEI 627 (767)
T ss_pred HHHHHHHHHHH
Confidence 99999887643
No 171
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=9.1e-10 Score=115.73 Aligned_cols=168 Identities=11% Similarity=0.094 Sum_probs=111.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcc-----------cCCCchhHHHHHHHHhhhhc
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG-----------IGGSNANSIKELVSNEALSA 464 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~-----------~g~s~~~~i~e~l~~a~~~~ 464 (790)
.++++||+||.|+||..+|..+|+.+-|.--. .+...+. ....+..+ ......++++++........
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~-~~Cg~C~-sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s 83 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKAN-GFCKTCE-SCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPS 83 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCC-CCCCCCH-HHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCc
Confidence 57999999999999999999999998664211 1111110 01111111 01123566777666543221
Q ss_pred cccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCC----------C
Q 003873 465 NMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKP----------R 534 (790)
Q Consensus 465 ~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~p----------t 534 (790)
. ..+.++|+||+++|.|+..+.++++.+++ +.+...++++.++.....+++++|||+.+.|.++ .
T Consensus 84 ~---e~~~~KV~II~~ae~m~~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~ 158 (261)
T PRK05818 84 V---ESNGKKIYIIYGIEKLNKQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESN 158 (261)
T ss_pred h---hcCCCEEEEeccHhhhCHHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccC
Confidence 1 12457899999999999988888888887 3444444444445578889999999999999888 4
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 003873 535 KQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM 579 (790)
Q Consensus 535 ~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~ 579 (790)
..++...|.. ...+++ .++..++|++..++..++.+
T Consensus 159 ~~~i~~~L~~-----~~~~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 159 DRYFQYILLS-----FYSVDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred hHHHHHHHHH-----ccCccH----HHHHHcCCCHHHHHHHHHHH
Confidence 4455554432 122444 67778899999999999854
No 172
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=99.14 E-value=1.1e-10 Score=139.37 Aligned_cols=80 Identities=26% Similarity=0.383 Sum_probs=73.6
Q ss_pred CCCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCC---CCcchHHHHHHhCCceeCHHHHHHHH
Q 003873 201 APDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDED---IAGAKSTKAKELGTPFLTEDGLFDMI 277 (790)
Q Consensus 201 ~~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~---~g~~K~~kA~~~~i~ii~e~~f~~~l 277 (790)
.+.+|.|++|||||.|.. +|++++.+|+.+||+|.++|+++|++||.|.+ +|++|+++|+++||+||+|++|++++
T Consensus 186 ~~kpL~G~~fviTGtl~~-sr~elK~~Ie~~GGkvsssVs~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~L~d~i 264 (815)
T PLN03122 186 PGKPFSGMMISLSGRLSR-THQYWKKDIEKHGGKVANSVEGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAWLIDSI 264 (815)
T ss_pred cCCCcCCcEEEEeCCCCC-CHHHHHHHHHHcCCEEccccccceEEEEcCccccccCccHHHHHHHcCCcCccHHHHHHHH
Confidence 445799999999999976 99999999999999999999999999999976 56799999999999999999999999
Q ss_pred hhcC
Q 003873 278 RASK 281 (790)
Q Consensus 278 ~~~~ 281 (790)
....
T Consensus 265 ~~~k 268 (815)
T PLN03122 265 EKQE 268 (815)
T ss_pred hcCC
Confidence 8753
No 173
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.14 E-value=7.6e-10 Score=135.62 Aligned_cols=186 Identities=22% Similarity=0.260 Sum_probs=122.6
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
+.|+||+..++.|...+..-.. +...+ ..+...+||+||+|||||++|++||+.+ +..++.++.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~-----gl~~~------~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~ 577 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARV-----GLKNP------NRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSE 577 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhh-----cccCC------CCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchh
Confidence 5699999999999998876211 11111 1233568999999999999999999988 35688888776
Q ss_pred CCCchhhhhhcccC-------CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh-----
Q 003873 433 SRGKADAKISKGIG-------GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK----- 500 (790)
Q Consensus 433 ~rsk~~~~i~~~~g-------~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~----- 500 (790)
..... .+...+| -.....+.+.+. ..+++||||||+|.+....++.|..+++.-.
T Consensus 578 ~~~~~--~~~~l~g~~~gyvg~~~~~~l~~~~~-----------~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~ 644 (821)
T CHL00095 578 YMEKH--TVSKLIGSPPGYVGYNEGGQLTEAVR-----------KKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSK 644 (821)
T ss_pred ccccc--cHHHhcCCCCcccCcCccchHHHHHH-----------hCCCeEEEECChhhCCHHHHHHHHHHhccCceecCC
Confidence 43321 1111111 111122333222 2456899999999999887788777776421
Q ss_pred -----cCCCcEEEEecccch-------------------h-----------------hhhhccccc-cccccCCCCHHHH
Q 003873 501 -----ISKIPIICICNDRYS-------------------Q-----------------KLKSLVNYC-SDLRFRKPRKQEI 538 (790)
Q Consensus 501 -----~s~~pII~I~nd~~~-------------------~-----------------~l~~L~sR~-~~I~F~~pt~~ei 538 (790)
..++.||+++|-... . .-+.|++|+ .+|.|++++.+++
T Consensus 645 g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l 724 (821)
T CHL00095 645 GRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDV 724 (821)
T ss_pred CcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHH
Confidence 234456666652100 0 014578888 6799999999999
Q ss_pred HHHHHHHHHH-------cC--CCCCHHHHHHHHHHc
Q 003873 539 AKRLMQIANA-------EG--LEVNEIALEELADRV 565 (790)
Q Consensus 539 ~~iL~~I~~~-------Eg--i~i~~~~l~~Ia~~s 565 (790)
.+++...+.. .+ +.+++++++.|++..
T Consensus 725 ~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 725 WEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence 9988766543 22 468999999999974
No 174
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=1.6e-09 Score=117.29 Aligned_cols=169 Identities=11% Similarity=0.114 Sum_probs=113.0
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCcEEE-EeCCCCCCchhhhhhcccC-CCchhHHHHHHHHhhhhccccCCCCC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE-VNASDSRGKADAKISKGIG-GSNANSIKELVSNEALSANMDRSKHP 472 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE-inaSd~rsk~~~~i~~~~g-~s~~~~i~e~l~~a~~~~~~~~~~~~ 472 (790)
...+++||+|+.|+||+++|+.+++.+.|..-. ++..+. ..+..+....+ ....+.++++.......+. ..+.
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~--p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~---~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQEL--PANIILFDIFDKDLSKSEFLSAINKLYFSSF---VQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCC--CcceEEeccCCCcCCHHHHHHHHHHhccCCc---ccCC
Confidence 357899999999999999999999998552100 111000 00000001001 1224567777766543321 1247
Q ss_pred ceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCC
Q 003873 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLE 552 (790)
Q Consensus 473 ~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~ 552 (790)
++|+|||+++.|...+.+++..+++. ....+-+|++|+ .....++++++||..+.|.+++.+++...|... +
T Consensus 91 ~KvvII~~~e~m~~~a~NaLLK~LEE-Pp~~t~~il~~~-~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~----~-- 162 (299)
T PRK07132 91 KKILIIKNIEKTSNSLLNALLKTIEE-PPKDTYFLLTTK-NINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK----N-- 162 (299)
T ss_pred ceEEEEecccccCHHHHHHHHHHhhC-CCCCeEEEEEeC-ChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc----C--
Confidence 78999999999998777877777774 223334555565 456777999999999999999999999888742 3
Q ss_pred CCHHHHHHHHHHccCCHHHHHHHHH
Q 003873 553 VNEIALEELADRVNGDIRMAINQLQ 577 (790)
Q Consensus 553 i~~~~l~~Ia~~s~GDiR~aIn~Lq 577 (790)
++++....++..++ ++..|+.+++
T Consensus 163 ~~~~~a~~~a~~~~-~~~~a~~~~~ 186 (299)
T PRK07132 163 KEKEYNWFYAYIFS-NFEQAEKYIN 186 (299)
T ss_pred CChhHHHHHHHHcC-CHHHHHHHHh
Confidence 67777777777776 5988887753
No 175
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.1e-10 Score=121.45 Aligned_cols=226 Identities=21% Similarity=0.300 Sum_probs=140.1
Q ss_pred ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
-+.+-++|---.++.|+-|-+.++++|++.++.-. .+.... ...+-.+++.++|||+||+|||.||+++|++.
T Consensus 171 v~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPL---thPE~Y----eemGikpPKGVIlyG~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 171 VSVMKVEKAPQETYADIGGLESQIQEIKESVELPL---THPEYY----EEMGIKPPKGVILYGEPGTGKTLLAKAVANQT 243 (440)
T ss_pred ceeeecccCchhhhcccccHHHHHHHHHHhhcCCC---CCHHHH----HHcCCCCCCeeEEeCCCCCchhHHHHHHhccc
Confidence 34566777666699999999999999998887511 000000 00122568999999999999999999999998
Q ss_pred CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc--------cc---hh
Q 003873 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA--------GD---RG 490 (790)
Q Consensus 422 g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~--------~~---~~ 490 (790)
...|+.+-.|+ .|..++|... ..++++|.-+. ...+.|+||||||.+.. +. +.
T Consensus 244 SATFlRvvGse-------LiQkylGdGp-klvRqlF~vA~--------e~apSIvFiDEIdAiGtKRyds~SggerEiQr 307 (440)
T KOG0726|consen 244 SATFLRVVGSE-------LIQKYLGDGP-KLVRELFRVAE--------EHAPSIVFIDEIDAIGTKRYDSNSGGEREIQR 307 (440)
T ss_pred chhhhhhhhHH-------HHHHHhccch-HHHHHHHHHHH--------hcCCceEEeehhhhhccccccCCCccHHHHHH
Confidence 88777766553 5666666543 35778887664 35568999999998854 11 23
Q ss_pred HHHHHHHHhh----cCCCcEEEEecccchhhhhhccc--cc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHH
Q 003873 491 GIADLIASIK----ISKIPIICICNDRYSQKLKSLVN--YC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIA-LEELA 562 (790)
Q Consensus 491 ~l~~Ll~~i~----~s~~pII~I~nd~~~~~l~~L~s--R~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~-l~~Ia 562 (790)
.+++|++.+. ...+.||+.+|. ...+-+.|.+ |. ..|.|..|+...-++++.-.- -++.+..++ ++.++
T Consensus 308 tmLELLNQldGFdsrgDvKvimATnr-ie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHT--s~Mtl~~dVnle~li 384 (440)
T KOG0726|consen 308 TMLELLNQLDGFDSRGDVKVIMATNR-IETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHT--SRMTLAEDVNLEELI 384 (440)
T ss_pred HHHHHHHhccCccccCCeEEEEeccc-ccccCHhhcCCCccccccccCCCchhhhceeEEEee--cccchhccccHHHHh
Confidence 4556666553 234456666663 3333344442 22 238898888777666554211 122222221 33333
Q ss_pred ----HHccCCHHHHHHHHHHHHhc--CCCCCHHHHHH
Q 003873 563 ----DRVNGDIRMAINQLQYMSLS--LSVIKYDDIRQ 593 (790)
Q Consensus 563 ----~~s~GDiR~aIn~Lq~~~~~--~~~it~~~v~~ 593 (790)
+.++.||..+..-.-++++. ...++.++.++
T Consensus 385 ~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~k 421 (440)
T KOG0726|consen 385 MTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKK 421 (440)
T ss_pred hcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHH
Confidence 35677888777666555554 23445554443
No 176
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=7.2e-10 Score=126.79 Aligned_cols=195 Identities=17% Similarity=0.254 Sum_probs=131.6
Q ss_pred CCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeC
Q 003873 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430 (790)
Q Consensus 351 ~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEina 430 (790)
.|-. .++.|....+..++..+..=.. ..... ...+-..++.+|+|||||||||.+++++|++.++.++.+|+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~--~~~~~-----~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~ 251 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLR--HPALF-----KSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLING 251 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhc--chhhh-----hhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEeccc
Confidence 4555 6777777777777776664111 01111 11223578999999999999999999999999999999998
Q ss_pred CCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCC-ceEEEEecCCCCCccc--------h--hHHHHHHHHh
Q 003873 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHP-KTVLIMDEVDGMSAGD--------R--GGIADLIASI 499 (790)
Q Consensus 431 Sd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~-~~VLIIDEiD~L~~~~--------~--~~l~~Ll~~i 499 (790)
+.. +... .+.+...++..|..+. +.. +.+|+|||+|.+.+.. + ..+..|++.+
T Consensus 252 pel-------i~k~-~gEte~~LR~~f~~a~--------k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~ 315 (693)
T KOG0730|consen 252 PEL-------ISKF-PGETESNLRKAFAEAL--------KFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGL 315 (693)
T ss_pred HHH-------HHhc-ccchHHHHHHHHHHHh--------ccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhC
Confidence 742 3333 3334445777777764 233 7899999999998621 1 2455555555
Q ss_pred hcCCCcEEEE-ecccchhhhhhccc-ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHH
Q 003873 500 KISKIPIICI-CNDRYSQKLKSLVN-YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRM 571 (790)
Q Consensus 500 ~~s~~pII~I-~nd~~~~~l~~L~s-R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~ 571 (790)
... .-+|++ ++++...+-+.+++ |+. .+.+.-|+..+...+|+.++.+.++. ++..+..|+..++|-+..
T Consensus 316 ~~~-~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGa 388 (693)
T KOG0730|consen 316 KPD-AKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGA 388 (693)
T ss_pred cCc-CcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHH
Confidence 432 334444 44434434455653 543 48888899999999999999887776 677889999998875543
No 177
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=1.1e-09 Score=117.60 Aligned_cols=180 Identities=19% Similarity=0.214 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEE-EeCCCCCCchhh
Q 003873 361 NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE-VNASDSRGKADA 439 (790)
Q Consensus 361 ~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE-inaSd~rsk~~~ 439 (790)
|+.+++.|+..+.. +..++++||+|| +||+++|+.+|+.+.|.-.. ..+...+.. ..
T Consensus 7 q~~~~~~L~~~~~~-------------------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~-C~ 64 (290)
T PRK07276 7 QPKVFQRFQTILEQ-------------------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRS-CR 64 (290)
T ss_pred HHHHHHHHHHHHHc-------------------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHH-HH
Confidence 56677777777766 246799999996 68999999999998664211 011111000 01
Q ss_pred hhhcc----------cC-CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEE
Q 003873 440 KISKG----------IG-GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIIC 508 (790)
Q Consensus 440 ~i~~~----------~g-~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~ 508 (790)
.+..+ -+ ....+.|+++.......+ ..+.++|+|||++|.|+..+.++++++++ +.+...+++
T Consensus 65 ~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p----~~~~~kV~II~~ad~m~~~AaNaLLKtLE--EPp~~t~~i 138 (290)
T PRK07276 65 LIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG----YEGKQQVFIIKDADKMHVNAANSLLKVIE--EPQSEIYIF 138 (290)
T ss_pred HHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc----ccCCcEEEEeehhhhcCHHHHHHHHHHhc--CCCCCeEEE
Confidence 11110 01 123567888777654432 24567899999999999988888887777 344434444
Q ss_pred EecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 003873 509 ICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576 (790)
Q Consensus 509 I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~L 576 (790)
++++.....+++++|||..|.|.+ +.+++..+|. .+|+ +......++.. .|++..|+.++
T Consensus 139 L~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~----~~g~--~~~~a~~la~~-~~s~~~A~~l~ 198 (290)
T PRK07276 139 LLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE----QKGL--LKTQAELLAKL-AQSTSEAEKLA 198 (290)
T ss_pred EEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH----HcCC--ChHHHHHHHHH-CCCHHHHHHHh
Confidence 444447788999999999999976 6666665553 4564 34444445544 46798888776
No 178
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.11 E-value=2.1e-09 Score=132.24 Aligned_cols=201 Identities=19% Similarity=0.257 Sum_probs=133.0
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
..|+||+..++.|...+..-.. +... ...+...+||+||+|||||++|++||+.+ +..++.++++.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~-----gl~~------~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRA-----GLSD------PNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhc-----cCCC------CCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 4699999999999999887211 1111 11234579999999999999999999987 45788888876
Q ss_pred CCCchhhhhhcccCC-------CchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh-----
Q 003873 433 SRGKADAKISKGIGG-------SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK----- 500 (790)
Q Consensus 433 ~rsk~~~~i~~~~g~-------s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~----- 500 (790)
..... .+...+|. .....+.+.+. ..++.|||||||+.+....++.|..+++.-.
T Consensus 634 ~~~~~--~~~~l~g~~~g~~g~~~~g~l~~~v~-----------~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~ 700 (852)
T TIGR03346 634 YMEKH--SVARLIGAPPGYVGYEEGGQLTEAVR-----------RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQ 700 (852)
T ss_pred hcccc--hHHHhcCCCCCccCcccccHHHHHHH-----------cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCC
Confidence 53321 11111111 01112222221 2345799999999999888888887775321
Q ss_pred -----cCCCcEEEEecccch---h------------h----h-----hhccccc-cccccCCCCHHHHHHHHHHHHH---
Q 003873 501 -----ISKIPIICICNDRYS---Q------------K----L-----KSLVNYC-SDLRFRKPRKQEIAKRLMQIAN--- 547 (790)
Q Consensus 501 -----~s~~pII~I~nd~~~---~------------~----l-----~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~--- 547 (790)
..++.||+++|-... . . + +.|++|+ .++.|.|++.+++..++...+.
T Consensus 701 g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~ 780 (852)
T TIGR03346 701 GRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLR 780 (852)
T ss_pred CeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHH
Confidence 233446667664111 0 0 1 4566777 4688999999999888776543
Q ss_pred ----HcC--CCCCHHHHHHHHHHc---cCCHHHHHHHHHHHH
Q 003873 548 ----AEG--LEVNEIALEELADRV---NGDIRMAINQLQYMS 580 (790)
Q Consensus 548 ----~Eg--i~i~~~~l~~Ia~~s---~GDiR~aIn~Lq~~~ 580 (790)
..+ +.+++++++.|++.. .+.+|.+-+.++...
T Consensus 781 ~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 781 KRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 222 568999999999974 478999888887654
No 179
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.11 E-value=7.7e-10 Score=120.09 Aligned_cols=182 Identities=15% Similarity=0.178 Sum_probs=114.8
Q ss_pred cCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 350 YRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 350 Y~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
|.|..-.+.+-+......+..||.. .+++||.||||||||++|+.||+.+|++++.++
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~----------------------~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~ 96 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAY----------------------DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVN 96 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhc----------------------CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEE
Confidence 3455455677788888888777754 468999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhcccCCCch-----hHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHH-----h
Q 003873 430 ASDSRGKADAKISKGIGGSNA-----NSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIAS-----I 499 (790)
Q Consensus 430 aSd~rsk~~~~i~~~~g~s~~-----~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~-----i 499 (790)
++..-...+ .+|.... ..+..+...... .....+.+||+||+|......+..++.+++. +
T Consensus 97 ~~~~l~~~D-----liG~~~~~l~~g~~~~~f~~GpL~-----~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i 166 (327)
T TIGR01650 97 LDSHVSRID-----LVGKDAIVLKDGKQITEFRDGILP-----WALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTL 166 (327)
T ss_pred ecCCCChhh-----cCCCceeeccCCcceeEEecCcch-----hHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEE
Confidence 875433221 1111100 000011000000 0012346899999999998888888888873 1
Q ss_pred hc--------CCCcEEEEeccc--------c---hhhhhhcccccc-ccccCCCCHHHHHHHHHHHHHHcCCC--CCHHH
Q 003873 500 KI--------SKIPIICICNDR--------Y---SQKLKSLVNYCS-DLRFRKPRKQEIAKRLMQIANAEGLE--VNEIA 557 (790)
Q Consensus 500 ~~--------s~~pII~I~nd~--------~---~~~l~~L~sR~~-~I~F~~pt~~ei~~iL~~I~~~Egi~--i~~~~ 557 (790)
.. ....+|.++|.. | ......+++|+. .+.+..|+.++-.++|...+. ++. .++..
T Consensus 167 ~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~--~~~~~~~~~i 244 (327)
T TIGR01650 167 LDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAK--GFDDTEGKDI 244 (327)
T ss_pred CCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhcc--CCCccchHHH
Confidence 11 112245556642 1 112367888886 468999999998888876542 221 13556
Q ss_pred HHHHHHHc
Q 003873 558 LEELADRV 565 (790)
Q Consensus 558 l~~Ia~~s 565 (790)
++.+++.+
T Consensus 245 ~~~mV~la 252 (327)
T TIGR01650 245 INAMVRVA 252 (327)
T ss_pred HHHHHHHH
Confidence 66666654
No 180
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6e-10 Score=117.76 Aligned_cols=174 Identities=17% Similarity=0.192 Sum_probs=99.8
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC---------CcEE
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG---------FQAI 426 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg---------~~ii 426 (790)
+.|+-....+++|..|...-... ...+... +--...+.+||+||||||||+|++++|+.+. ..++
T Consensus 142 EsLiyds~lK~~ll~Ya~s~l~f-sek~vnt-----nlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 142 ESLIYDSNLKERLLSYAASALLF-SEKKVNT-----NLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred HHHhhcccHHHHHHHHHHHHHHH-HhcCCCC-----ceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 34555556667776665542111 1101000 1113568999999999999999999999994 3578
Q ss_pred EEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc------------ch---hH
Q 003873 427 EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG------------DR---GG 491 (790)
Q Consensus 427 EinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~------------~~---~~ 491 (790)
|+|+...-+|+ ++.+. ..+..+|....--.. ..+.-.+++||||+.+... .- ++
T Consensus 216 EinshsLFSKW-------FsESg-KlV~kmF~kI~ELv~---d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNa 284 (423)
T KOG0744|consen 216 EINSHSLFSKW-------FSESG-KLVAKMFQKIQELVE---DRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNA 284 (423)
T ss_pred EEehhHHHHHH-------Hhhhh-hHHHHHHHHHHHHHh---CCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHH
Confidence 99986543332 22221 123333332211110 0234468899999987531 11 33
Q ss_pred HHHHHHHhhcCCCcEEEEecccchhhhhhccccccc-cccCCCCHHHHHHHHHHHH
Q 003873 492 IADLIASIKISKIPIICICNDRYSQKLKSLVNYCSD-LRFRKPRKQEIAKRLMQIA 546 (790)
Q Consensus 492 l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~-I~F~~pt~~ei~~iL~~I~ 546 (790)
++.-++.++....-+|+.+.+-...+-..+..|... +...+|+...+.++++...
T Consensus 285 lLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 285 LLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred HHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHH
Confidence 444445555444445554444334444678888765 5567899999988887644
No 181
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.09 E-value=2e-09 Score=132.06 Aligned_cols=207 Identities=15% Similarity=0.201 Sum_probs=130.3
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeC
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNA 430 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEina 430 (790)
-.+.|+||...++.|...+..... +...+ ..+...+||+||+|+|||++|++||+.+ +..++.+++
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~-----gl~~~------~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~ 634 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRA-----GLSDP------NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDM 634 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHh-----cccCC------CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEh
Confidence 345799999999999999987321 10000 1123479999999999999999999987 346788888
Q ss_pred CCCCCchhhhhhcccCCCc---hhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh-------
Q 003873 431 SDSRGKADAKISKGIGGSN---ANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK------- 500 (790)
Q Consensus 431 Sd~rsk~~~~i~~~~g~s~---~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~------- 500 (790)
+...... .+...+|... ...-..++..+.. ..++.||||||++.+....++.+..+++.-.
T Consensus 635 se~~~~~--~~~~LiG~~pgy~g~~~~g~l~~~v~-------~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr 705 (857)
T PRK10865 635 SEFMEKH--SVSRLVGAPPGYVGYEEGGYLTEAVR-------RRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGR 705 (857)
T ss_pred HHhhhhh--hHHHHhCCCCcccccchhHHHHHHHH-------hCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCce
Confidence 7643221 1111111110 0000112222211 2345799999999999888888877776321
Q ss_pred ---cCCCcEEEEecccch---------------h---------hhhhccccc-cccccCCCCHHHHHHHHHHHHHH----
Q 003873 501 ---ISKIPIICICNDRYS---------------Q---------KLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANA---- 548 (790)
Q Consensus 501 ---~s~~pII~I~nd~~~---------------~---------~l~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~---- 548 (790)
..++.||+++|-... . ..+.|++|+ ..+.|.|++.+++..++...+..
T Consensus 706 ~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~r 785 (857)
T PRK10865 706 TVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKR 785 (857)
T ss_pred EEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 122335666663110 0 014678888 67999999999999887765543
Q ss_pred ---cC--CCCCHHHHHHHHHHcc---CCHHHHHHHHHHHH
Q 003873 549 ---EG--LEVNEIALEELADRVN---GDIRMAINQLQYMS 580 (790)
Q Consensus 549 ---Eg--i~i~~~~l~~Ia~~s~---GDiR~aIn~Lq~~~ 580 (790)
.+ +.+++++++.|++... --.|.+-+.++..+
T Consensus 786 l~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i 825 (857)
T PRK10865 786 LEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQI 825 (857)
T ss_pred HHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHH
Confidence 23 4579999999998652 13666666666544
No 182
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.08 E-value=2.1e-09 Score=117.99 Aligned_cols=222 Identities=15% Similarity=0.205 Sum_probs=123.8
Q ss_pred CCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC-cEE---
Q 003873 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF-QAI--- 426 (790)
Q Consensus 351 ~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~-~ii--- 426 (790)
.|..|++|+|++..++.|...+-. ....++||+||||+||||+|++++..+.. ..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~--------------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~ 62 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID--------------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGC 62 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc--------------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhccc
Confidence 588899999999999888754432 12368999999999999999999999832 111
Q ss_pred EEeCC------CCCCc-hhhhhh---------------cccCCCchhHHHHHHHHhhhhcccc-CCCCCceEEEEecCCC
Q 003873 427 EVNAS------DSRGK-ADAKIS---------------KGIGGSNANSIKELVSNEALSANMD-RSKHPKTVLIMDEVDG 483 (790)
Q Consensus 427 EinaS------d~rsk-~~~~i~---------------~~~g~s~~~~i~e~l~~a~~~~~~~-~~~~~~~VLIIDEiD~ 483 (790)
++++. +.+.. ....+. ..+|+ ..+...+.......... .......+|||||++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~---~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInr 139 (334)
T PRK13407 63 PVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGA---LDIERALTRGEKAFEPGLLARANRGYLYIDEVNL 139 (334)
T ss_pred ccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecc---hhhhhhhhcCCeeecCCceEEcCCCeEEecChHh
Confidence 11110 00000 000000 01111 11222221111100000 0123346999999999
Q ss_pred CCccchhHHHHHHHHhh----------cCCCcEEEEecccc-h-hhhhhcccccc-ccccCCCCH-HHHHHHHHHHHH--
Q 003873 484 MSAGDRGGIADLIASIK----------ISKIPIICICNDRY-S-QKLKSLVNYCS-DLRFRKPRK-QEIAKRLMQIAN-- 547 (790)
Q Consensus 484 L~~~~~~~l~~Ll~~i~----------~s~~pII~I~nd~~-~-~~l~~L~sR~~-~I~F~~pt~-~ei~~iL~~I~~-- 547 (790)
+....+..+..+++.-. ....++++|++.+. . ...+.|+.|+. .+.+.++.. ++...+|.+...
T Consensus 140 l~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~ 219 (334)
T PRK13407 140 LEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYD 219 (334)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhccc
Confidence 99888888888776321 12346777665332 2 23356777754 355555544 444444443211
Q ss_pred ---------------------------HcCCCCCHHHHHHHHHHc----cCCHHHHHHHHHHHHh-----cCCCCCHHHH
Q 003873 548 ---------------------------AEGLEVNEIALEELADRV----NGDIRMAINQLQYMSL-----SLSVIKYDDI 591 (790)
Q Consensus 548 ---------------------------~Egi~i~~~~l~~Ia~~s----~GDiR~aIn~Lq~~~~-----~~~~it~~~v 591 (790)
-..+.++++++++|++.+ ....|..|.++..+.. +...|+.+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di 299 (334)
T PRK13407 220 ADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHL 299 (334)
T ss_pred ccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHH
Confidence 123567888888877654 2357777765544322 2567888888
Q ss_pred HHHH
Q 003873 592 RQRL 595 (790)
Q Consensus 592 ~~~~ 595 (790)
+...
T Consensus 300 ~~~~ 303 (334)
T PRK13407 300 RSVA 303 (334)
T ss_pred HHHH
Confidence 7654
No 183
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.08 E-value=1.7e-09 Score=111.47 Aligned_cols=188 Identities=16% Similarity=0.278 Sum_probs=106.2
Q ss_pred ccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC---CcEEEEeCCCCC
Q 003873 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG---FQAIEVNASDSR 434 (790)
Q Consensus 358 LvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg---~~iiEinaSd~r 434 (790)
++|+++.++.|..++.. ...+.++|+||.|+|||++++.+.+.+. +..++++.....
T Consensus 1 F~gR~~el~~l~~~l~~--------------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~ 60 (234)
T PF01637_consen 1 FFGREKELEKLKELLES--------------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEES 60 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----------------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBS
T ss_pred CCCHHHHHHHHHHHHHh--------------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccch
Confidence 47899999999998886 2357999999999999999999999883 223333332221
Q ss_pred Cchh--hh-------------hhcccCC------------CchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCC-c
Q 003873 435 GKAD--AK-------------ISKGIGG------------SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS-A 486 (790)
Q Consensus 435 sk~~--~~-------------i~~~~g~------------s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~-~ 486 (790)
.... .. +...+.. .....+..++..... ...+.||||||++.+. .
T Consensus 61 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-------~~~~~iiviDe~~~~~~~ 133 (234)
T PF01637_consen 61 NESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK-------KGKKVIIVIDEFQYLAIA 133 (234)
T ss_dssp HHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH-------CHCCEEEEEETGGGGGBC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh-------cCCcEEEEEecHHHHhhc
Confidence 1100 00 0000000 011223333332211 2234899999999998 2
Q ss_pred --cchhHHHHHHHHhhc----CCCcEEEEecc-cchh----hhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCC--
Q 003873 487 --GDRGGIADLIASIKI----SKIPIICICND-RYSQ----KLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEV-- 553 (790)
Q Consensus 487 --~~~~~l~~Ll~~i~~----s~~pII~I~nd-~~~~----~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i-- 553 (790)
.....+..+...+.. .++.+|++++. .... ...++..|+..+.+.+++.++..+++...+... ..+
T Consensus 134 ~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~ 212 (234)
T PF01637_consen 134 SEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPF 212 (234)
T ss_dssp TTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------
T ss_pred ccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccC
Confidence 234444555554433 33334444432 1211 225677888889999999999999999877665 554
Q ss_pred CHHHHHHHHHHccCCHHHHH
Q 003873 554 NEIALEELADRVNGDIRMAI 573 (790)
Q Consensus 554 ~~~~l~~Ia~~s~GDiR~aI 573 (790)
+++.++.|...++|.++.+.
T Consensus 213 ~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 213 SDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp -HHHHHHHHHHHTT-HHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHh
Confidence 99999999999999998753
No 184
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.3e-09 Score=118.06 Aligned_cols=171 Identities=19% Similarity=0.254 Sum_probs=116.4
Q ss_pred CCCC-CccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 351 RPKT-PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 351 ~P~s-l~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
+++. |+++|-+......|...-..-. +.+ ....+++++|||||||+|||.+|+-||...|.++--+.
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTa------NTK------~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mT 416 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATA------NTK------KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMT 416 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhc------ccc------cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhc
Confidence 3454 8999999988888776655411 111 12257899999999999999999999999999987777
Q ss_pred CCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCC---------CccchhHHHHHHHHh-
Q 003873 430 ASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGM---------SAGDRGGIADLIASI- 499 (790)
Q Consensus 430 aSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L---------~~~~~~~l~~Ll~~i- 499 (790)
..|.-- +|...+..|.++|+-+.. ..+..+|||||+|.+ +...+.+|+.|+-..
T Consensus 417 GGDVAP---------lG~qaVTkiH~lFDWakk-------S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG 480 (630)
T KOG0742|consen 417 GGDVAP---------LGAQAVTKIHKLFDWAKK-------SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 480 (630)
T ss_pred CCCccc---------cchHHHHHHHHHHHHHhh-------cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc
Confidence 666421 233335567788877643 345679999999964 334556677666433
Q ss_pred hcCCCcEEEEecccchhhhhhccccc-cccccCCCCHHHHHHHHHHHHHHc
Q 003873 500 KISKIPIICICNDRYSQKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAE 549 (790)
Q Consensus 500 ~~s~~pII~I~nd~~~~~l~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~E 549 (790)
..++-.++++++++..+.--.+..|+ ..|.|.-|..++..++|...+.+.
T Consensus 481 dqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 481 DQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred ccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 33443444444444444444555564 458999999999999888776543
No 185
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.05 E-value=1.1e-09 Score=128.29 Aligned_cols=217 Identities=15% Similarity=0.195 Sum_probs=137.8
Q ss_pred cCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEE
Q 003873 350 YRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAI 426 (790)
Q Consensus 350 Y~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~ii 426 (790)
++..++++|+|+...++++..-+...- .....|||+|++||||+++|++|.... +..++
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a------------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv 251 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVA------------------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFV 251 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHh------------------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeE
Confidence 334578899999999888888777621 235689999999999999999999875 46899
Q ss_pred EEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhc-----
Q 003873 427 EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKI----- 501 (790)
Q Consensus 427 EinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~----- 501 (790)
.+||...... .++..+.+.....+ ..+..............+||||||+.|+...+..+..+++.-..
T Consensus 252 ~i~c~~~~~~---~~~~~lfg~~~~~~----~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 252 KVNCAALSET---LLESELFGHEKGAF----TGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGG 324 (534)
T ss_pred EeecCCCCHH---HHHHHHcCCCCCcc----CCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCC
Confidence 9999865221 12211111100000 00000000000123356899999999999888888877764221
Q ss_pred -----CCCcEEEEecccchhhh------hhcccccc--ccccCCCC--HHHHHHHHHHH----HHHcC--CCCCHHHHHH
Q 003873 502 -----SKIPIICICNDRYSQKL------KSLVNYCS--DLRFRKPR--KQEIAKRLMQI----ANAEG--LEVNEIALEE 560 (790)
Q Consensus 502 -----s~~pII~I~nd~~~~~l------~~L~sR~~--~I~F~~pt--~~ei~~iL~~I----~~~Eg--i~i~~~~l~~ 560 (790)
.++.||++++......+ ..|..|+. .|.++++. .++|..++... +.+.+ +.++++++..
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 404 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRV 404 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 23567777775443332 34555544 35566665 45555444443 33333 5689999999
Q ss_pred HHHHc-cCCHHHHHHHHHHHHhc--CCCCCHHHH
Q 003873 561 LADRV-NGDIRMAINQLQYMSLS--LSVIKYDDI 591 (790)
Q Consensus 561 Ia~~s-~GDiR~aIn~Lq~~~~~--~~~it~~~v 591 (790)
|..+. .||+|++-|.|+.++.. ...|+.+++
T Consensus 405 L~~~~WPGNvrEL~~v~~~a~~~~~~~~I~~~~l 438 (534)
T TIGR01817 405 LMSCKWPGNVRELENCLERTATLSRSGTITRSDF 438 (534)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhCCCCcccHHHC
Confidence 99986 89999999999887654 335665554
No 186
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.01 E-value=7.6e-09 Score=108.01 Aligned_cols=102 Identities=25% Similarity=0.259 Sum_probs=80.2
Q ss_pred ceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccc-------------hhhhhhccccccccccCCCCHHHHH
Q 003873 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY-------------SQKLKSLVNYCSDLRFRKPRKQEIA 539 (790)
Q Consensus 473 ~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~-------------~~~l~~L~sR~~~I~F~~pt~~ei~ 539 (790)
+.||||||++.|.-+....|+. .++.+-.|||+.++++- +-....|+.|...|+-.+++.++++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~k---alES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r 373 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHK---ALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIR 373 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHH---HhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHH
Confidence 5699999999997665555444 44566778766543321 2223578899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHc-cCCHHHHHHHHH
Q 003873 540 KRLMQIANAEGLEVNEIALEELADRV-NGDIRMAINQLQ 577 (790)
Q Consensus 540 ~iL~~I~~~Egi~i~~~~l~~Ia~~s-~GDiR~aIn~Lq 577 (790)
++|...+..|++.++++++..+++.. .-.+|.++.+|.
T Consensus 374 ~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~ 412 (456)
T KOG1942|consen 374 QIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLT 412 (456)
T ss_pred HHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcC
Confidence 99999999999999999999999854 568999988874
No 187
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.9e-09 Score=126.10 Aligned_cols=200 Identities=19% Similarity=0.257 Sum_probs=131.2
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC---CcEEEEeCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG---FQAIEVNASD 432 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg---~~iiEinaSd 432 (790)
.-++||+..+..|...++.-. .|.+.+ +.+...+||.||+|+|||-||++||..+. -.++.+|.|.
T Consensus 491 ~rViGQd~AV~avs~aIrraR-----aGL~dp------~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSE 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRAR-----AGLGDP------NRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSE 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHh-----cCCCCC------CCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHH
Confidence 358999999999999998722 222222 23456899999999999999999999995 6788999887
Q ss_pred CCCchhhhhhcccCCC-------chhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHh------
Q 003873 433 SRGKADAKISKGIGGS-------NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI------ 499 (790)
Q Consensus 433 ~rsk~~~~i~~~~g~s-------~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i------ 499 (790)
+..+. .+...+|.. ....+.+.+. ..+++||++|||+...+.-.+.++.+++.-
T Consensus 560 y~EkH--sVSrLIGaPPGYVGyeeGG~LTEaVR-----------r~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 560 YMEKH--SVSRLIGAPPGYVGYEEGGQLTEAVR-----------RKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred HHHHH--HHHHHhCCCCCCceeccccchhHhhh-----------cCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCC
Confidence 64332 122222111 1111222111 356889999999999887777777666532
Q ss_pred ----hcCCCcEEEEeccc-------c-----h-------hh---h-----hhcccccc-ccccCCCCHHHHHHHHHHHHH
Q 003873 500 ----KISKIPIICICNDR-------Y-----S-------QK---L-----KSLVNYCS-DLRFRKPRKQEIAKRLMQIAN 547 (790)
Q Consensus 500 ----~~s~~pII~I~nd~-------~-----~-------~~---l-----~~L~sR~~-~I~F~~pt~~ei~~iL~~I~~ 547 (790)
...+..||+++|-- . . .. + +.|++|.. +|.|++++.+.+.+++...+.
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHH
Confidence 12334455566510 0 0 00 1 45778877 799999999998887765433
Q ss_pred -------HcCC--CCCHHHHHHHHHHc---cCCHHHHHHHHHHH
Q 003873 548 -------AEGL--EVNEIALEELADRV---NGDIRMAINQLQYM 579 (790)
Q Consensus 548 -------~Egi--~i~~~~l~~Ia~~s---~GDiR~aIn~Lq~~ 579 (790)
..++ .+++++.+.|++.+ ..-.|-+.+.||..
T Consensus 707 ~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~ 750 (786)
T COG0542 707 RLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQE 750 (786)
T ss_pred HHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHH
Confidence 2344 47899999999987 23456666666644
No 188
>PHA02244 ATPase-like protein
Probab=98.98 E-value=6.9e-09 Score=113.92 Aligned_cols=126 Identities=16% Similarity=0.125 Sum_probs=81.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VL 476 (790)
..++||+||||||||++|+++|..++.+++.++...... .+...+.....-.-..++.. .....+|
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~----~L~G~i~~~g~~~dgpLl~A----------~~~GgvL 184 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEF----ELKGFIDANGKFHETPFYEA----------FKKGGLF 184 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHH----hhcccccccccccchHHHHH----------hhcCCEE
Confidence 467999999999999999999999999999998432100 00000000000000011111 1234699
Q ss_pred EEecCCCCCccchhHHHHHHHHh----------hcCCCcEEEEecccc----------hhhhhhccccccccccCCCCHH
Q 003873 477 IMDEVDGMSAGDRGGIADLIASI----------KISKIPIICICNDRY----------SQKLKSLVNYCSDLRFRKPRKQ 536 (790)
Q Consensus 477 IIDEiD~L~~~~~~~l~~Ll~~i----------~~s~~pII~I~nd~~----------~~~l~~L~sR~~~I~F~~pt~~ 536 (790)
||||++.+....+..|..+++.- ...+..+|+++|... .....++++|+..|.|..|+..
T Consensus 185 iLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~~ 264 (383)
T PHA02244 185 FIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYDEKI 264 (383)
T ss_pred EEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCCcHH
Confidence 99999999987777777777521 124567888888631 2334789999999999988743
No 189
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.97 E-value=3e-08 Score=106.06 Aligned_cols=193 Identities=15% Similarity=0.157 Sum_probs=113.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC---------CcEEEEeCCCCCC--chhhhhhcccCCCc--hhHHHHHHHHhhh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG---------FQAIEVNASDSRG--KADAKISKGIGGSN--ANSIKELVSNEAL 462 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg---------~~iiEinaSd~rs--k~~~~i~~~~g~s~--~~~i~e~l~~a~~ 462 (790)
..+++||+|++|.|||++++.+++.+. ++++.+.+...-+ .....|...++... .............
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ 139 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLR 139 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHH
Confidence 457899999999999999999998773 3455554432211 11122222222211 1111111111100
Q ss_pred hccccCCCCCceEEEEecCCCCCccchh---HHHHHHHH-hhcCCCcEEEEecccchhhh---hhccccccccccCCCCH
Q 003873 463 SANMDRSKHPKTVLIMDEVDGMSAGDRG---GIADLIAS-IKISKIPIICICNDRYSQKL---KSLVNYCSDLRFRKPRK 535 (790)
Q Consensus 463 ~~~~~~~~~~~~VLIIDEiD~L~~~~~~---~l~~Ll~~-i~~s~~pII~I~nd~~~~~l---~~L~sR~~~I~F~~pt~ 535 (790)
.. ..-.-++|||||++++..+... .+..++.. ....++||||+++..-...+ +.+.+|+..+.+++...
T Consensus 140 ll----r~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~ 215 (302)
T PF05621_consen 140 LL----RRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWEL 215 (302)
T ss_pred HH----HHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCC
Confidence 00 0123469999999998664333 33333332 24678999999875443334 67899999999988775
Q ss_pred H-HHHHHHHHHHHHcCCC-----CCHHHHHHHHHHccCCHHHHHHHHHHHHhc-----CCCCCHHHHH
Q 003873 536 Q-EIAKRLMQIANAEGLE-----VNEIALEELADRVNGDIRMAINQLQYMSLS-----LSVIKYDDIR 592 (790)
Q Consensus 536 ~-ei~~iL~~I~~~Egi~-----i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~-----~~~it~~~v~ 592 (790)
+ +....|...-....+. -+++....|...|+|.+..+.++|..++.. ...||.+.+.
T Consensus 216 d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG~E~It~~~l~ 283 (302)
T PF05621_consen 216 DEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAIRSGEERITREILD 283 (302)
T ss_pred CcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcCCceecHHHHh
Confidence 5 3444444433222221 346777899999999999999988776643 3445554443
No 190
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.96 E-value=7.8e-09 Score=113.83 Aligned_cols=200 Identities=14% Similarity=0.174 Sum_probs=125.7
Q ss_pred ccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCC
Q 003873 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSR 434 (790)
Q Consensus 358 LvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~r 434 (790)
|+|+...++.+..-+...- .....|||+|++||||+++|++|.... +.+++.+||....
T Consensus 1 liG~S~~m~~~~~~~~~~a------------------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~ 62 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA------------------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALS 62 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh------------------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCC
Confidence 4677777777766666521 235789999999999999999998655 4689999998542
Q ss_pred CchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh----------cCCC
Q 003873 435 GKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK----------ISKI 504 (790)
Q Consensus 435 sk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~----------~s~~ 504 (790)
.. .++..+.+.....+ ..+..............+||||||+.|+...+..|..+++.-. ...+
T Consensus 63 ~~---~l~~~lfG~~~g~~----~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 63 EN---LLDSELFGHEAGAF----TGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred hH---HHHHHHhccccccc----cCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccce
Confidence 21 12211111100000 0000000000012335689999999999988888888876422 1345
Q ss_pred cEEEEecccchhh------hhhccccc--cccccCCCC--HHHHHHHHHH----HHHHcC----CCCCHHHHHHHHHHc-
Q 003873 505 PIICICNDRYSQK------LKSLVNYC--SDLRFRKPR--KQEIAKRLMQ----IANAEG----LEVNEIALEELADRV- 565 (790)
Q Consensus 505 pII~I~nd~~~~~------l~~L~sR~--~~I~F~~pt--~~ei~~iL~~----I~~~Eg----i~i~~~~l~~Ia~~s- 565 (790)
.||++++...... ...|..|+ ..|.++|+. .++|..++.. .+.+.+ ..++++++..|..+.
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~W 215 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHW 215 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCC
Confidence 6777776543222 24566665 346677766 4555544443 344434 358999999999987
Q ss_pred cCCHHHHHHHHHHHHhc
Q 003873 566 NGDIRMAINQLQYMSLS 582 (790)
Q Consensus 566 ~GDiR~aIn~Lq~~~~~ 582 (790)
.||+|++-|.++.++..
T Consensus 216 PGNvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 216 PGNVRELKNVVERSVYR 232 (329)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 89999999999887764
No 191
>PRK08116 hypothetical protein; Validated
Probab=98.92 E-value=4.8e-09 Score=112.24 Aligned_cols=157 Identities=20% Similarity=0.260 Sum_probs=93.4
Q ss_pred hcCCCCCccccC---CHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---C
Q 003873 349 KYRPKTPNEIVG---NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---G 422 (790)
Q Consensus 349 KY~P~sl~dLvG---~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g 422 (790)
+|+-.+|+.++. +...+..++.++.+|.... ....+++|+|++|+|||+||.++|+++ +
T Consensus 78 ~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~---------------~~~~gl~l~G~~GtGKThLa~aia~~l~~~~ 142 (268)
T PRK08116 78 KFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMK---------------KENVGLLLWGSVGTGKTYLAACIANELIEKG 142 (268)
T ss_pred HHHhcchhcccCChHHHHHHHHHHHHHHHHHhhc---------------cCCceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 344445555543 3345666777777764321 123579999999999999999999987 7
Q ss_pred CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCC--CCccchhHHHHHHHHhh
Q 003873 423 FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG--MSAGDRGGIADLIASIK 500 (790)
Q Consensus 423 ~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~--L~~~~~~~l~~Ll~~i~ 500 (790)
..++.++.++... .+...+.........+++.. .....+|||||+.. .+...+..+..+++...
T Consensus 143 ~~v~~~~~~~ll~----~i~~~~~~~~~~~~~~~~~~----------l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~ 208 (268)
T PRK08116 143 VPVIFVNFPQLLN----RIKSTYKSSGKEDENEIIRS----------LVNADLLILDDLGAERDTEWAREKVYNIIDSRY 208 (268)
T ss_pred CeEEEEEHHHHHH----HHHHHHhccccccHHHHHHH----------hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHH
Confidence 7888887654211 11111111001111222222 12235999999954 44445566777887766
Q ss_pred cCCCcEEEEecccchhhh----hhcccc----ccccccCCCC
Q 003873 501 ISKIPIICICNDRYSQKL----KSLVNY----CSDLRFRKPR 534 (790)
Q Consensus 501 ~s~~pII~I~nd~~~~~l----~~L~sR----~~~I~F~~pt 534 (790)
....|+|+++|.....+. ..+.+| |..|.|..++
T Consensus 209 ~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 209 RKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS 250 (268)
T ss_pred HCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC
Confidence 777899999996543321 234444 6566666555
No 192
>PRK12377 putative replication protein; Provisional
Probab=98.92 E-value=4.9e-09 Score=110.67 Aligned_cols=131 Identities=17% Similarity=0.197 Sum_probs=81.5
Q ss_pred cCCCCCcccc----CCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---C
Q 003873 350 YRPKTPNEIV----GNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---G 422 (790)
Q Consensus 350 Y~P~sl~dLv----G~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g 422 (790)
|.-.+|+.+. ++..++..++.++..|.. ....++|+||||||||+||.++|+++ |
T Consensus 68 ~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~------------------~~~~l~l~G~~GtGKThLa~AIa~~l~~~g 129 (248)
T PRK12377 68 HRKCSFANYQVQNDGQRYALSQAKSIADELMT------------------GCTNFVFSGKPGTGKNHLAAAIGNRLLAKG 129 (248)
T ss_pred cccCCcCCcccCChhHHHHHHHHHHHHHHHHh------------------cCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3334555554 344466677777777532 13689999999999999999999988 6
Q ss_pred CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCC--CccchhHHHHHHHHhh
Q 003873 423 FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGM--SAGDRGGIADLIASIK 500 (790)
Q Consensus 423 ~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L--~~~~~~~l~~Ll~~i~ 500 (790)
+.++.++..+.... +....... ....+++.. -....||||||+... +...+..+..+++.-.
T Consensus 130 ~~v~~i~~~~l~~~----l~~~~~~~--~~~~~~l~~----------l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~ 193 (248)
T PRK12377 130 RSVIVVTVPDVMSR----LHESYDNG--QSGEKFLQE----------LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRT 193 (248)
T ss_pred CCeEEEEHHHHHHH----HHHHHhcc--chHHHHHHH----------hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 77777766542111 11000000 011122222 133469999999654 3345566777787766
Q ss_pred cCCCcEEEEecccc
Q 003873 501 ISKIPIICICNDRY 514 (790)
Q Consensus 501 ~s~~pII~I~nd~~ 514 (790)
....|+|+++|-..
T Consensus 194 ~~~~ptiitSNl~~ 207 (248)
T PRK12377 194 ASMRSVGMLTNLNH 207 (248)
T ss_pred hcCCCEEEEcCCCH
Confidence 77899999999543
No 193
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.91 E-value=2.2e-08 Score=104.99 Aligned_cols=105 Identities=22% Similarity=0.191 Sum_probs=84.5
Q ss_pred ceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccc------------hhhhhhccccccccccCCCCHHHHHH
Q 003873 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY------------SQKLKSLVNYCSDLRFRKPRKQEIAK 540 (790)
Q Consensus 473 ~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~------------~~~l~~L~sR~~~I~F~~pt~~ei~~ 540 (790)
+.||||||+|.|.-+...+++..+ +..-.|||++++++- +-+...|+.|...|.-.|++.+++++
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAl---E~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~ 365 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRAL---ENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKK 365 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHh---hhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHH
Confidence 579999999999777666666554 455788888765432 22235688999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHH
Q 003873 541 RLMQIANAEGLEVNEIALEELADRV-NGDIRMAINQLQYMS 580 (790)
Q Consensus 541 iL~~I~~~Egi~i~~~~l~~Ia~~s-~GDiR~aIn~Lq~~~ 580 (790)
+|...|..|.+.+++++++.|.... .-.+|.+|+++....
T Consensus 366 IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~ 406 (454)
T KOG2680|consen 366 ILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAAS 406 (454)
T ss_pred HHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999998765 568999999985543
No 194
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3.2e-08 Score=113.62 Aligned_cols=184 Identities=17% Similarity=0.200 Sum_probs=119.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC----CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKH 471 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg----~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~ 471 (790)
...++||+||+|||||.||+++++++. +++..++|+..++... ..|..++.+..... ...
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~------------e~iQk~l~~vfse~----~~~ 493 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL------------EKIQKFLNNVFSEA----LWY 493 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH------------HHHHHHHHHHHHHH----Hhh
Confidence 467999999999999999999999983 5566688887665532 23444444432111 135
Q ss_pred CceEEEEecCCCCCccch----------h----HHHHHHHHhhcCCCcEEEEecccchhhhhhccc---cc-cccccCCC
Q 003873 472 PKTVLIMDEVDGMSAGDR----------G----GIADLIASIKISKIPIICICNDRYSQKLKSLVN---YC-SDLRFRKP 533 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~~----------~----~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~s---R~-~~I~F~~p 533 (790)
.+.||++|++|.+.+.+. . ++..++...-..+..|.+|++-...+.+.+++. ++ ..+.+++|
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 678999999999976211 1 222333322233444555655444444444332 22 24778999
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCC----H----HHHHHHH--HHHHhcCCCCCHHHHHHHH
Q 003873 534 RKQEIAKRLMQIANAEGLEVNEIALEELADRVNGD----I----RMAINQL--QYMSLSLSVIKYDDIRQRL 595 (790)
Q Consensus 534 t~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GD----i----R~aIn~L--q~~~~~~~~it~~~v~~~~ 595 (790)
...+..++|..++.+....+....++.++..+.|- + .++|..+ +..+...+.++.+++.+.+
T Consensus 574 ~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL 645 (952)
T KOG0735|consen 574 AVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSL 645 (952)
T ss_pred chhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence 99999999999999887777788888899888773 2 2233333 3455555567777766544
No 195
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.90 E-value=4.3e-08 Score=108.06 Aligned_cols=226 Identities=15% Similarity=0.146 Sum_probs=128.0
Q ss_pred hhcCCC-CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC-cE
Q 003873 348 EKYRPK-TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF-QA 425 (790)
Q Consensus 348 eKY~P~-sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~-~i 425 (790)
++-+|. .|++||||++.+..|...+.+ +....+||+||+|+||||+|+.+++.+.. .+
T Consensus 8 ~~~~~~~pf~~ivGq~~~k~al~~~~~~--------------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~ 67 (350)
T CHL00081 8 KKERPVFPFTAIVGQEEMKLALILNVID--------------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEV 67 (350)
T ss_pred hccCCCCCHHHHhChHHHHHHHHHhccC--------------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCc
Confidence 333555 699999999988888766655 23468999999999999999999887731 11
Q ss_pred EE---EeC-CC--------CCCchh-------------------hhhh-cccCCCchhHHHHHHHHhhhhcc-ccCCCCC
Q 003873 426 IE---VNA-SD--------SRGKAD-------------------AKIS-KGIGGSNANSIKELVSNEALSAN-MDRSKHP 472 (790)
Q Consensus 426 iE---ina-Sd--------~rsk~~-------------------~~i~-~~~g~s~~~~i~e~l~~a~~~~~-~~~~~~~ 472 (790)
+. +|+ .+ .++... ...+ ..+|+. ++...+........ .......
T Consensus 68 ~~~~pf~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~i---D~~~al~~g~~~~~~GlL~~A~ 144 (350)
T CHL00081 68 VKDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTI---DIEKALTEGVKAFEPGLLAKAN 144 (350)
T ss_pred cCCCCCCCCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcc---cHHHHhhcCcccccCCeeeecC
Confidence 11 110 00 000000 0000 001110 12222222111000 0011234
Q ss_pred ceEEEEecCCCCCccchhHHHHHHHHh--h--------cCCCcEEEEecccch--hhhhhcccccc-ccccCCCC-HHHH
Q 003873 473 KTVLIMDEVDGMSAGDRGGIADLIASI--K--------ISKIPIICICNDRYS--QKLKSLVNYCS-DLRFRKPR-KQEI 538 (790)
Q Consensus 473 ~~VLIIDEiD~L~~~~~~~l~~Ll~~i--~--------~s~~pII~I~nd~~~--~~l~~L~sR~~-~I~F~~pt-~~ei 538 (790)
..+|+|||++.|....+..+..+++.- . ....++|+|++.+.. ...+.|+.|+. .+.+..++ .+..
T Consensus 145 ~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 145 RGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELR 224 (350)
T ss_pred CCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHH
Confidence 579999999999998888888877541 1 124567887764332 23355666644 35566665 3444
Q ss_pred HHHHHHHHH-----------------------------HcCCCCCHHHHHHHHHHc---c-CCHHHHHHHHHHHHh----
Q 003873 539 AKRLMQIAN-----------------------------AEGLEVNEIALEELADRV---N-GDIRMAINQLQYMSL---- 581 (790)
Q Consensus 539 ~~iL~~I~~-----------------------------~Egi~i~~~~l~~Ia~~s---~-GDiR~aIn~Lq~~~~---- 581 (790)
.++|.+... -..+.+++.++++|++.+ + -..|..|.+++.+..
T Consensus 225 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal 304 (350)
T CHL00081 225 VKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAF 304 (350)
T ss_pred HHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHH
Confidence 444443210 124668888888887755 2 258888877754322
Q ss_pred -cCCCCCHHHHHHHHH
Q 003873 582 -SLSVIKYDDIRQRLL 596 (790)
Q Consensus 582 -~~~~it~~~v~~~~~ 596 (790)
+...++.++++.++.
T Consensus 305 ~GR~~V~pdDv~~~a~ 320 (350)
T CHL00081 305 EGRTEVTPKDIFKVIT 320 (350)
T ss_pred cCCCCCCHHHHHHHHH
Confidence 356788888887653
No 196
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.88 E-value=1.9e-08 Score=117.01 Aligned_cols=204 Identities=14% Similarity=0.177 Sum_probs=127.8
Q ss_pred CCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHH-----------h
Q 003873 353 KTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM-----------L 421 (790)
Q Consensus 353 ~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAke-----------l 421 (790)
.+|++|+|+...++.+..-+...- .....|||+|++||||+++|++|... .
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A------------------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~ 277 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA------------------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKK 277 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh------------------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccC
Confidence 368899999999998888877621 23578999999999999999999887 3
Q ss_pred CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhh--hccccCCCCCceEEEEecCCCCCccchhHHHHHHHHh
Q 003873 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL--SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI 499 (790)
Q Consensus 422 g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~--~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i 499 (790)
+.+++.+||+..... .++..+.+.....+ ..+.. .... -.......||||||+.|+...|..|..+++.-
T Consensus 278 ~~pfv~inCaal~e~---lleseLFG~~~gaf----tga~~~~~~Gl-~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~ 349 (538)
T PRK15424 278 SHPFVAVNCGAIAES---LLEAELFGYEEGAF----TGSRRGGRAGL-FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEK 349 (538)
T ss_pred CCCeEEeecccCChh---hHHHHhcCCccccc----cCccccccCCc-hhccCCCEEEEcChHhCCHHHHHHHHhhhhcC
Confidence 568999999865321 22222211110000 00000 0000 00223458999999999998888888887642
Q ss_pred h----------cCCCcEEEEecccchhhh------hhccccc--cccccCCCCH--HHHHHHHHHHH----HHcCCCCCH
Q 003873 500 K----------ISKIPIICICNDRYSQKL------KSLVNYC--SDLRFRKPRK--QEIAKRLMQIA----NAEGLEVNE 555 (790)
Q Consensus 500 ~----------~s~~pII~I~nd~~~~~l------~~L~sR~--~~I~F~~pt~--~ei~~iL~~I~----~~Egi~i~~ 555 (790)
. ..++.||++++......+ ..|..|. ..|.++|+.. ++|..++...+ ...+..+++
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~ 429 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSA 429 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCH
Confidence 2 123467887775544333 2355554 3455555543 35554444443 345667888
Q ss_pred HHHH-------HHHHHc-cCCHHHHHHHHHHHHhc
Q 003873 556 IALE-------ELADRV-NGDIRMAINQLQYMSLS 582 (790)
Q Consensus 556 ~~l~-------~Ia~~s-~GDiR~aIn~Lq~~~~~ 582 (790)
+++. .|..+. .||+|++-|.++.++..
T Consensus 430 ~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 430 ALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred HHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 7763 344333 79999999999887753
No 197
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.86 E-value=2.8e-08 Score=115.51 Aligned_cols=214 Identities=15% Similarity=0.236 Sum_probs=134.9
Q ss_pred CCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEe
Q 003873 353 KTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVN 429 (790)
Q Consensus 353 ~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEin 429 (790)
.+|++|+|+...++.+..-+...- ....+|||+|++||||+++|+++.... +.+++.+|
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A------------------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~in 270 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYA------------------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAIN 270 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh------------------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEec
Confidence 568899999999888888887621 235789999999999999999998764 56899999
Q ss_pred CCCCCCchhhhhhcccCCCchhHHHHHHHHhhh--hccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh-------
Q 003873 430 ASDSRGKADAKISKGIGGSNANSIKELVSNEAL--SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK------- 500 (790)
Q Consensus 430 aSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~--~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~------- 500 (790)
|...... .++..+.+.....+ ..+.. ..... .......||||||+.|+...|..|..+++.-.
T Consensus 271 C~~l~e~---lleseLFG~~~gaf----tga~~~~~~Gl~-e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 271 CGAIAES---LLEAELFGYEEGAF----TGARRGGRTGLI-EAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred cccCChh---HHHHHhcCCccccc----ccccccccccch-hhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCC
Confidence 9865321 22222211110000 00000 00000 01234589999999999988888888876422
Q ss_pred ---cCCCcEEEEecccchhhh------hhccccc--cccccCCCCH--HHHHHH----HHHHHHHcCCCCCHHHHHH---
Q 003873 501 ---ISKIPIICICNDRYSQKL------KSLVNYC--SDLRFRKPRK--QEIAKR----LMQIANAEGLEVNEIALEE--- 560 (790)
Q Consensus 501 ---~s~~pII~I~nd~~~~~l------~~L~sR~--~~I~F~~pt~--~ei~~i----L~~I~~~Egi~i~~~~l~~--- 560 (790)
...+.||++++......+ ..|..|. ..|.++|+.. ++|..+ |.+.+...++.++++++..
T Consensus 343 ~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~ 422 (526)
T TIGR02329 343 EPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAG 422 (526)
T ss_pred ceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHH
Confidence 123467887775543332 2344443 3466666653 344443 3344444567789998887
Q ss_pred ----HHHHc-cCCHHHHHHHHHHHHhc-----CCCCCHHHHH
Q 003873 561 ----LADRV-NGDIRMAINQLQYMSLS-----LSVIKYDDIR 592 (790)
Q Consensus 561 ----Ia~~s-~GDiR~aIn~Lq~~~~~-----~~~it~~~v~ 592 (790)
|.... .||+|++-|.++.++.. ...|+.+++.
T Consensus 423 ~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~ 464 (526)
T TIGR02329 423 VADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLR 464 (526)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhh
Confidence 66554 89999999999887753 2356665543
No 198
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.86 E-value=4.4e-08 Score=111.12 Aligned_cols=206 Identities=12% Similarity=0.085 Sum_probs=118.2
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC--cEEEEeCCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF--QAIEVNASDS 433 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~--~iiEinaSd~ 433 (790)
..|+|++++++.+...+.. ..++||.||||||||++|++|++.++. .+..+++...
T Consensus 20 ~~i~gre~vI~lll~aala----------------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ft 77 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALS----------------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS 77 (498)
T ss_pred hhccCcHHHHHHHHHHHcc----------------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeec
Confidence 3588899999888877765 478999999999999999999998742 2333333211
Q ss_pred CCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh--------cCCCc
Q 003873 434 RGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK--------ISKIP 505 (790)
Q Consensus 434 rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~--------~s~~p 505 (790)
. .. ..+|. ..+........+.......-....+||+|||..++...+..|..+++.-. ....|
T Consensus 78 t-p~-----DLfG~---l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~r 148 (498)
T PRK13531 78 T-PE-----EVFGP---LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMR 148 (498)
T ss_pred C-cH-----HhcCc---HHHhhhhhcCchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCc
Confidence 0 00 11111 01111111111100000000122499999999999988888888885321 23456
Q ss_pred EEEEecccchh---hhhhcccccc-ccccCCCC-HHHHHHHHHHHHH-----------------------HcCCCCCHHH
Q 003873 506 IICICNDRYSQ---KLKSLVNYCS-DLRFRKPR-KQEIAKRLMQIAN-----------------------AEGLEVNEIA 557 (790)
Q Consensus 506 II~I~nd~~~~---~l~~L~sR~~-~I~F~~pt-~~ei~~iL~~I~~-----------------------~Egi~i~~~~ 557 (790)
+|+++++.... .+..+..|+. .+.+++|+ .++...+|..... -..+.+++.+
T Consensus 149 fiv~ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v 228 (498)
T PRK13531 149 LLVTASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHV 228 (498)
T ss_pred EEEEECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHH
Confidence 77776643332 2345666663 36666775 3444555543110 1345677777
Q ss_pred HHHHHHHcc----------CCHHHHHHHH---HHHHh--cCCCCCHHHHH
Q 003873 558 LEELADRVN----------GDIRMAINQL---QYMSL--SLSVIKYDDIR 592 (790)
Q Consensus 558 l~~Ia~~s~----------GDiR~aIn~L---q~~~~--~~~~it~~~v~ 592 (790)
+++|+.... -..|..+.++ +.++. ++..++.+++.
T Consensus 229 ~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 229 FELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred HHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 777765431 2456655554 44333 35678888887
No 199
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.85 E-value=2.2e-08 Score=110.21 Aligned_cols=204 Identities=15% Similarity=0.190 Sum_probs=126.7
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeC
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNA 430 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEina 430 (790)
.+++|+|+....+.+.+-+...- .....|||+|++||||+++|+++.... +..++.+||
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a------------------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c 65 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA------------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh------------------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeC
Confidence 35789999988888888777621 235689999999999999999998655 357999999
Q ss_pred CCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh----------
Q 003873 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK---------- 500 (790)
Q Consensus 431 Sd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~---------- 500 (790)
...... .++..+.+.....+.... ...... ........||||||+.|+...+..+..+++.-.
T Consensus 66 ~~~~~~---~~~~~lfg~~~~~~~g~~---~~~~g~-l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~ 138 (326)
T PRK11608 66 AALNEN---LLDSELFGHEAGAFTGAQ---KRHPGR-FERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPL 138 (326)
T ss_pred CCCCHH---HHHHHHccccccccCCcc---cccCCc-hhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 864211 111111110000000000 000000 012334689999999999988888888776422
Q ss_pred cCCCcEEEEecccchhhh------hhcccccc--ccccCCCCH--HHHHHHH----HHHHHHcCC----CCCHHHHHHHH
Q 003873 501 ISKIPIICICNDRYSQKL------KSLVNYCS--DLRFRKPRK--QEIAKRL----MQIANAEGL----EVNEIALEELA 562 (790)
Q Consensus 501 ~s~~pII~I~nd~~~~~l------~~L~sR~~--~I~F~~pt~--~ei~~iL----~~I~~~Egi----~i~~~~l~~Ia 562 (790)
..++.||++++......+ ..|..|+. .|.++|+.. ++|..++ ...+.+.+. .++++++..|.
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~ 218 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLL 218 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 123567777765433221 44555543 355665543 3444333 334444442 48999999999
Q ss_pred HHc-cCCHHHHHHHHHHHHhc
Q 003873 563 DRV-NGDIRMAINQLQYMSLS 582 (790)
Q Consensus 563 ~~s-~GDiR~aIn~Lq~~~~~ 582 (790)
... .||+|++-|.++.++..
T Consensus 219 ~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 219 NYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred hCCCCcHHHHHHHHHHHHHHh
Confidence 876 89999999999887654
No 200
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.9e-08 Score=106.49 Aligned_cols=113 Identities=18% Similarity=0.326 Sum_probs=78.2
Q ss_pred ccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCch
Q 003873 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA 437 (790)
Q Consensus 358 LvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~ 437 (790)
+|||+...+-|.-.+.+.++.......+. .-.-...++||.||.|||||.||+.||+.++.+|.-.+|+..
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~-----dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL---- 133 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDND-----DVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL---- 133 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCC-----ceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccch----
Confidence 78999988888777777665543322110 001234689999999999999999999999999888777643
Q ss_pred hhhhhcc-cCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc
Q 003873 438 DAKISKG-IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA 486 (790)
Q Consensus 438 ~~~i~~~-~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~ 486 (790)
.+.+ +|....+-+..++..+.+... ...+.||+|||||.+..
T Consensus 134 ---TEAGYVGEDVENillkLlqaadydV~----rAerGIIyIDEIDKIar 176 (408)
T COG1219 134 ---TEAGYVGEDVENILLKLLQAADYDVE----RAERGIIYIDEIDKIAR 176 (408)
T ss_pred ---hhccccchhHHHHHHHHHHHcccCHH----HHhCCeEEEechhhhhc
Confidence 2222 333334566677776654332 34567999999999865
No 201
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.83 E-value=4e-08 Score=117.79 Aligned_cols=209 Identities=14% Similarity=0.169 Sum_probs=132.6
Q ss_pred CCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEE
Q 003873 352 PKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEV 428 (790)
Q Consensus 352 P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEi 428 (790)
..+|++|+|....++++...+...- .....|||+|++||||+++|++|.... +..++.+
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a------------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~v 382 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA------------------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAV 382 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh------------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEE
Confidence 3479999999988888877777621 134579999999999999999998875 3589999
Q ss_pred eCCCCCCchhhhhhcccCCCchhHHHHHHHHhh---hhcc-ccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhc---
Q 003873 429 NASDSRGKADAKISKGIGGSNANSIKELVSNEA---LSAN-MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKI--- 501 (790)
Q Consensus 429 naSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~---~~~~-~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~--- 501 (790)
||...... .++. ++|.... .... ..........||||||+.|....+..|..+++.-..
T Consensus 383 nc~~~~~~---~~~~-----------elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~ 448 (638)
T PRK11388 383 NCQLYPDE---ALAE-----------EFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRL 448 (638)
T ss_pred ECCCCChH---HHHH-----------HhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeC
Confidence 99864221 1111 1111100 0000 000023356899999999999888888888763211
Q ss_pred -------CCCcEEEEecccchhhh------hhccccc--cccccCCCCH--HHHHHHHHHHHH----Hc--CCCCCHHHH
Q 003873 502 -------SKIPIICICNDRYSQKL------KSLVNYC--SDLRFRKPRK--QEIAKRLMQIAN----AE--GLEVNEIAL 558 (790)
Q Consensus 502 -------s~~pII~I~nd~~~~~l------~~L~sR~--~~I~F~~pt~--~ei~~iL~~I~~----~E--gi~i~~~~l 558 (790)
.++.||++++......+ +.|..|. ..|.++|+.. ++|..++..++. +. .+.++++++
T Consensus 449 ~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~ 528 (638)
T PRK11388 449 DSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDAL 528 (638)
T ss_pred CCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHH
Confidence 13457777765443322 2333342 3355555553 345544444433 22 246899999
Q ss_pred HHHHHHc-cCCHHHHHHHHHHHHhc--CCCCCHHHHH
Q 003873 559 EELADRV-NGDIRMAINQLQYMSLS--LSVIKYDDIR 592 (790)
Q Consensus 559 ~~Ia~~s-~GDiR~aIn~Lq~~~~~--~~~it~~~v~ 592 (790)
..|..+. .||+|++-|.|+.++.. ...|+.+++.
T Consensus 529 ~~L~~y~WPGNvreL~~~l~~~~~~~~~~~i~~~~lp 565 (638)
T PRK11388 529 ARLVSYRWPGNDFELRSVIENLALSSDNGRIRLSDLP 565 (638)
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHhCCCCeecHHHCc
Confidence 9999988 89999999999887654 2345555543
No 202
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=3.7e-08 Score=118.98 Aligned_cols=197 Identities=18% Similarity=0.242 Sum_probs=130.5
Q ss_pred CCCccccCCHHHHHHHHHHHHhh---hhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC--c---
Q 003873 353 KTPNEIVGNQQLVKQLHTWLAHW---NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF--Q--- 424 (790)
Q Consensus 353 ~sl~dLvG~e~~i~~L~~wL~~w---~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~--~--- 424 (790)
..|++|-|-+.++..|++-+..- .+.+.+ ..-.+++.+||+||||+|||..|+++|..+.- +
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~----------~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kis 331 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDN----------FNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKIS 331 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhh----------cccCCCcceeecCCCCCchhHHHHhhhhhhcccccccc
Confidence 36889999888888887765541 111111 11246899999999999999999999998832 1
Q ss_pred EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc---h--------hHHH
Q 003873 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD---R--------GGIA 493 (790)
Q Consensus 425 iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~---~--------~~l~ 493 (790)
++.-...| .+..++|.. ..+++-++..+. ...+.|||+||||+|..-. + ..++
T Consensus 332 ffmrkgaD-------~lskwvgEa-ERqlrllFeeA~--------k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLL 395 (1080)
T KOG0732|consen 332 FFMRKGAD-------CLSKWVGEA-ERQLRLLFEEAQ--------KTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLL 395 (1080)
T ss_pred hhhhcCch-------hhccccCcH-HHHHHHHHHHHh--------ccCceEEeccccccccccccchHHHhhhhHHHHHH
Confidence 11112222 333344433 245777777764 4567899999999997621 1 1233
Q ss_pred HHHHHhhcCCCcEEEEecccchhhhh-hcccc--c-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCH
Q 003873 494 DLIASIKISKIPIICICNDRYSQKLK-SLVNY--C-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDI 569 (790)
Q Consensus 494 ~Ll~~i~~s~~pII~I~nd~~~~~l~-~L~sR--~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDi 569 (790)
.|+.-+ .++.+||+|+..+....+. +|+++ + ..+.|.-|+.+...++|...-.+..-.+....+..|++.+.|-.
T Consensus 396 aLmdGl-dsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~ 474 (1080)
T KOG0732|consen 396 ALMDGL-DSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYG 474 (1080)
T ss_pred HhccCC-CCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccc
Confidence 333332 4567888887766666664 44432 2 24889999999988888866666666788999999999987766
Q ss_pred HHHHHHH
Q 003873 570 RMAINQL 576 (790)
Q Consensus 570 R~aIn~L 576 (790)
+.-|..|
T Consensus 475 gaDlkaL 481 (1080)
T KOG0732|consen 475 GADLKAL 481 (1080)
T ss_pred hHHHHHH
Confidence 6554444
No 203
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.83 E-value=3.4e-08 Score=115.20 Aligned_cols=204 Identities=14% Similarity=0.167 Sum_probs=129.1
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeC
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNA 430 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEina 430 (790)
.+.+|+|+...++.+..-+...- .....|||+|++||||+++|++|.... +..++.+||
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a------------------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c 246 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA------------------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNC 246 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh------------------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEc
Confidence 45789999999999888888721 235789999999999999999998875 468999999
Q ss_pred CCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh----------
Q 003873 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK---------- 500 (790)
Q Consensus 431 Sd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~---------- 500 (790)
...... .++..+.+.....+. .+...............||||||+.|....+..|..+++.-.
T Consensus 247 ~~~~~~---~~e~~lfG~~~g~~~----ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 247 AALPES---LAESELFGHVKGAFT----GAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred ccCChH---HHHHHhcCccccccC----CCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcce
Confidence 865321 222211111000000 000000000002334589999999999988888877776422
Q ss_pred cCCCcEEEEecccchhhh------hhcccccc--ccccCCCCH--HHHHHH----HHHHHHHcC---CCCCHHHHHHHHH
Q 003873 501 ISKIPIICICNDRYSQKL------KSLVNYCS--DLRFRKPRK--QEIAKR----LMQIANAEG---LEVNEIALEELAD 563 (790)
Q Consensus 501 ~s~~pII~I~nd~~~~~l------~~L~sR~~--~I~F~~pt~--~ei~~i----L~~I~~~Eg---i~i~~~~l~~Ia~ 563 (790)
...+.||++++......+ ..|..|.. .|.++|+.. ++|..+ |.+.+.+.+ +.++++++..|..
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~ 399 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLA 399 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 124578888876543322 33444433 355555542 344333 333444433 5689999999998
Q ss_pred Hc-cCCHHHHHHHHHHHHhc
Q 003873 564 RV-NGDIRMAINQLQYMSLS 582 (790)
Q Consensus 564 ~s-~GDiR~aIn~Lq~~~~~ 582 (790)
+. .||+|++-|.++.++..
T Consensus 400 y~WPGNvrEL~~~i~ra~~~ 419 (509)
T PRK05022 400 YDWPGNVRELEHVISRAALL 419 (509)
T ss_pred CCCCCcHHHHHHHHHHHHHh
Confidence 76 89999999999988764
No 204
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.82 E-value=4.2e-08 Score=110.89 Aligned_cols=212 Identities=18% Similarity=0.217 Sum_probs=138.7
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeC
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNA 430 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEina 430 (790)
...+|||+...+++|..-+..-- ...-.|||+|++||||-.+|++|.+.- +-+||.+||
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA------------------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNc 200 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVA------------------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNC 200 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHh------------------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeec
Confidence 46789999999999988887621 235689999999999999999998766 458999999
Q ss_pred CCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh----------
Q 003873 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK---------- 500 (790)
Q Consensus 431 Sd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~---------- 500 (790)
..... ..++..+.|.....|. .+.......-.......||||||..|.-..|..|+.+++.-.
T Consensus 201 aAip~---~l~ESELFGhekGAFT----GA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 201 AAIPE---NLLESELFGHEKGAFT----GAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred ccCCH---HHHHHHhhcccccCcC----CcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCccc
Confidence 86432 2344333322211111 111000000012345689999999999988888888887432
Q ss_pred cCCCcEEEEecccchhhh------hhccccccccccCCCC----HHH----HHHHHHHHHHHcCC---CCCHHHHHHHHH
Q 003873 501 ISKIPIICICNDRYSQKL------KSLVNYCSDLRFRKPR----KQE----IAKRLMQIANAEGL---EVNEIALEELAD 563 (790)
Q Consensus 501 ~s~~pII~I~nd~~~~~l------~~L~sR~~~I~F~~pt----~~e----i~~iL~~I~~~Egi---~i~~~~l~~Ia~ 563 (790)
..++.||+.+|-.....+ ..|..|..++.+.-|+ .++ ...+|.+.|...+. .++++++..|..
T Consensus 274 ~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~ 353 (464)
T COG2204 274 KVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLA 353 (464)
T ss_pred ceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 224558888876554443 3455665554444333 122 33455566666654 489999999988
Q ss_pred Hc-cCCHHHHHHHHHHHHhcC--CCCCHHH
Q 003873 564 RV-NGDIRMAINQLQYMSLSL--SVIKYDD 590 (790)
Q Consensus 564 ~s-~GDiR~aIn~Lq~~~~~~--~~it~~~ 590 (790)
+. .||+|++-|.++.++... ..++.++
T Consensus 354 y~WPGNVREL~N~ver~~il~~~~~i~~~~ 383 (464)
T COG2204 354 YDWPGNVRELENVVERAVILSEGPEIEVED 383 (464)
T ss_pred CCCChHHHHHHHHHHHHHhcCCccccchhh
Confidence 76 899999999999887653 3344443
No 205
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.82 E-value=4.1e-08 Score=114.63 Aligned_cols=208 Identities=14% Similarity=0.170 Sum_probs=133.8
Q ss_pred CCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEE
Q 003873 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIE 427 (790)
Q Consensus 351 ~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiE 427 (790)
...+|++|+|.....+++...+...- .....+||+|++||||+++|+++.... +..++.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A------------------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~ 260 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLA------------------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLA 260 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHh------------------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEE
Confidence 45689999999988888877776521 134679999999999999999987654 357899
Q ss_pred EeCCCCCCchhhhhhcccCCCchhHH-------HHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh
Q 003873 428 VNASDSRGKADAKISKGIGGSNANSI-------KELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK 500 (790)
Q Consensus 428 inaSd~rsk~~~~i~~~~g~s~~~~i-------~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~ 500 (790)
+||+..... .++..+.+.....+ ..++. ......||||||+.|+...|..+..+++.-.
T Consensus 261 inca~~~~~---~~e~elFG~~~~~~~~~~~~~~g~~e-----------~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~ 326 (520)
T PRK10820 261 LNCASIPDD---VVESELFGHAPGAYPNALEGKKGFFE-----------QANGGSVLLDEIGEMSPRMQAKLLRFLNDGT 326 (520)
T ss_pred eccccCCHH---HHHHHhcCCCCCCcCCcccCCCChhh-----------hcCCCEEEEeChhhCCHHHHHHHHHHHhcCC
Confidence 999865321 22221111100000 00111 1234589999999999988888887776421
Q ss_pred ----------cCCCcEEEEecccchhhh------hhccccc--cccccCCCCH--HHHHH----HHHHHHHHcCC---CC
Q 003873 501 ----------ISKIPIICICNDRYSQKL------KSLVNYC--SDLRFRKPRK--QEIAK----RLMQIANAEGL---EV 553 (790)
Q Consensus 501 ----------~s~~pII~I~nd~~~~~l------~~L~sR~--~~I~F~~pt~--~ei~~----iL~~I~~~Egi---~i 553 (790)
..++.|||+++......+ ..|..|. ..|.++|+.. +++.. +|...+.+.+. .+
T Consensus 327 ~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~l 406 (520)
T PRK10820 327 FRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKL 406 (520)
T ss_pred cccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 123457776665443332 3355553 4466666653 24443 34455555553 58
Q ss_pred CHHHHHHHHHH-ccCCHHHHHHHHHHHHhc--CCCCCHHH
Q 003873 554 NEIALEELADR-VNGDIRMAINQLQYMSLS--LSVIKYDD 590 (790)
Q Consensus 554 ~~~~l~~Ia~~-s~GDiR~aIn~Lq~~~~~--~~~it~~~ 590 (790)
+++++..|..+ ..||+|++-|.|+.+... +..|+.++
T Consensus 407 s~~a~~~L~~y~WPGNvreL~nvl~~a~~~~~~~~i~~~~ 446 (520)
T PRK10820 407 AADLNTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQD 446 (520)
T ss_pred CHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCcccHHH
Confidence 99999999988 599999999999877653 33455554
No 206
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.81 E-value=1e-07 Score=104.94 Aligned_cols=222 Identities=15% Similarity=0.148 Sum_probs=122.9
Q ss_pred CccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcE----EEEeC
Q 003873 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA----IEVNA 430 (790)
Q Consensus 355 l~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~i----iEina 430 (790)
|..|+||+..+..|...+-+ +...+++|.|++|+||||++++++..+..-- ...++
T Consensus 3 f~~ivgq~~~~~al~~~~~~--------------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~ 62 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVID--------------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNS 62 (337)
T ss_pred ccccccHHHHHHHHHHHhcC--------------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCC
Confidence 67899999999887655544 2346899999999999999999998872100 01111
Q ss_pred C---------CCCCchhh-----h------hhcccCCCc------hhHHHHHHHHhhhhcccc-CCCCCceEEEEecCCC
Q 003873 431 S---------DSRGKADA-----K------ISKGIGGSN------ANSIKELVSNEALSANMD-RSKHPKTVLIMDEVDG 483 (790)
Q Consensus 431 S---------d~rsk~~~-----~------i~~~~g~s~------~~~i~e~l~~a~~~~~~~-~~~~~~~VLIIDEiD~ 483 (790)
. ..|..... . +-....+.. ...+...+.......... .....+.+|||||++.
T Consensus 63 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~ 142 (337)
T TIGR02030 63 SPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNL 142 (337)
T ss_pred CCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHh
Confidence 0 00000000 0 000000000 012222222211111100 1123457999999999
Q ss_pred CCccchhHHHHHHHHhh----------cCCCcEEEEecccc-h-hhhhhcccccc-ccccCCCCH-HHHHHHHHHHHH--
Q 003873 484 MSAGDRGGIADLIASIK----------ISKIPIICICNDRY-S-QKLKSLVNYCS-DLRFRKPRK-QEIAKRLMQIAN-- 547 (790)
Q Consensus 484 L~~~~~~~l~~Ll~~i~----------~s~~pII~I~nd~~-~-~~l~~L~sR~~-~I~F~~pt~-~ei~~iL~~I~~-- 547 (790)
|....+..+..+++.-. ....++++|++.+. . ...+.|+.|+. .+.+..+.. ++..++|.+...
T Consensus 143 L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~ 222 (337)
T TIGR02030 143 LEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYD 222 (337)
T ss_pred CCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcc
Confidence 99888888887775311 12346777665432 2 23356777755 355555554 554445544110
Q ss_pred ---------------------------HcCCCCCHHHHHHHHHHc---cC-CHHHHHHHHHHHHh-----cCCCCCHHHH
Q 003873 548 ---------------------------AEGLEVNEIALEELADRV---NG-DIRMAINQLQYMSL-----SLSVIKYDDI 591 (790)
Q Consensus 548 ---------------------------~Egi~i~~~~l~~Ia~~s---~G-DiR~aIn~Lq~~~~-----~~~~it~~~v 591 (790)
-..+.++++++++|+..+ +. ..|..|.++..+.. +...|+.+++
T Consensus 223 ~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv 302 (337)
T TIGR02030 223 ADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDI 302 (337)
T ss_pred cCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 124568888888777644 33 46888877754322 3567888888
Q ss_pred HHHHH
Q 003873 592 RQRLL 596 (790)
Q Consensus 592 ~~~~~ 596 (790)
+.++.
T Consensus 303 ~~~a~ 307 (337)
T TIGR02030 303 RRVAV 307 (337)
T ss_pred HHHHH
Confidence 87553
No 207
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.81 E-value=3.4e-08 Score=108.95 Aligned_cols=157 Identities=17% Similarity=0.226 Sum_probs=98.1
Q ss_pred cccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCc
Q 003873 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436 (790)
Q Consensus 357 dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk 436 (790)
.++|.+..+..+..++.. ..++||-||||||||++|+.+|+.++.+++.+++...-..
T Consensus 25 ~~~g~~~~~~~~l~a~~~----------------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p 82 (329)
T COG0714 25 VVVGDEEVIELALLALLA----------------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLP 82 (329)
T ss_pred eeeccHHHHHHHHHHHHc----------------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCH
Confidence 378888888887777765 4789999999999999999999999999999998754332
Q ss_pred hhhhhhcccCCCchhHHHHHHH-Hhhhhcc-ccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh----c-----CCCc
Q 003873 437 ADAKISKGIGGSNANSIKELVS-NEALSAN-MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK----I-----SKIP 505 (790)
Q Consensus 437 ~~~~i~~~~g~s~~~~i~e~l~-~a~~~~~-~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~----~-----s~~p 505 (790)
.+ .+|.. .+..... ....... ......-..|+++|||+......++.++.+++... . ...|
T Consensus 83 ~d-----~~G~~---~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~ 154 (329)
T COG0714 83 SD-----LLGTY---AYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPP 154 (329)
T ss_pred HH-----hcCch---hHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCC
Confidence 21 11111 1111100 0000000 00000011499999999999999999998887521 1 1133
Q ss_pred EEE-Ee-cc----cchhhhhhccccc-cccccCCCCHH-HHHHHHH
Q 003873 506 IIC-IC-ND----RYSQKLKSLVNYC-SDLRFRKPRKQ-EIAKRLM 543 (790)
Q Consensus 506 II~-I~-nd----~~~~~l~~L~sR~-~~I~F~~pt~~-ei~~iL~ 543 (790)
+++ .+ |. ........+++|| ..+.+..|... +...++.
T Consensus 155 f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 155 FIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred CEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHH
Confidence 444 34 31 2233457899999 77888888444 4444443
No 208
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=7.7e-08 Score=114.17 Aligned_cols=202 Identities=19% Similarity=0.297 Sum_probs=134.5
Q ss_pred hhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh----
Q 003873 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---- 421 (790)
Q Consensus 346 W~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---- 421 (790)
.++.-+--.++-++|.++.++.+.+.|.. ...++-+|.|+||+|||++|.-+|..+
T Consensus 160 lt~~Ar~gklDPvIGRd~EI~r~iqIL~R--------------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~ 219 (786)
T COG0542 160 LTELAREGKLDPVIGRDEEIRRTIQILSR--------------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGD 219 (786)
T ss_pred hHHHHhcCCCCCCcChHHHHHHHHHHHhc--------------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCC
Confidence 44455556678899999999999999987 235678899999999999999999887
Q ss_pred ------CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc-ch-hHHH
Q 003873 422 ------GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DR-GGIA 493 (790)
Q Consensus 422 ------g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~-~~-~~l~ 493 (790)
+..++.++.+.... ...+.|.-...++.++.... ...+.||||||+|.+-+. .. ++-.
T Consensus 220 VP~~L~~~~i~sLD~g~LvA------GakyRGeFEeRlk~vl~ev~--------~~~~vILFIDEiHtiVGAG~~~G~a~ 285 (786)
T COG0542 220 VPESLKDKRIYSLDLGSLVA------GAKYRGEFEERLKAVLKEVE--------KSKNVILFIDEIHTIVGAGATEGGAM 285 (786)
T ss_pred CCHHHcCCEEEEecHHHHhc------cccccCcHHHHHHHHHHHHh--------cCCCeEEEEechhhhcCCCccccccc
Confidence 34555555432110 00111222345666666543 233789999999999762 22 1112
Q ss_pred HHHHHhhc--CCCcEEEEec---ccch---hhhhhccccccccccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHH
Q 003873 494 DLIASIKI--SKIPIICICN---DRYS---QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA----EGLEVNEIALEEL 561 (790)
Q Consensus 494 ~Ll~~i~~--s~~pII~I~n---d~~~---~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~----Egi~i~~~~l~~I 561 (790)
..-+.++. ++.-+-||+. +.|. .+-..|-+|++.|....|+.++...+|+-+..+ .++.++++++...
T Consensus 286 DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aA 365 (786)
T COG0542 286 DAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAA 365 (786)
T ss_pred chhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHH
Confidence 23333321 2333444433 2333 333788899999999999999999999876554 4788999999999
Q ss_pred HHHccCCH------HHHHHHHHHHHh
Q 003873 562 ADRVNGDI------RMAINQLQYMSL 581 (790)
Q Consensus 562 a~~s~GDi------R~aIn~Lq~~~~ 581 (790)
+..|..-| ..||.+|..+|.
T Consensus 366 v~LS~RYI~dR~LPDKAIDLiDeA~a 391 (786)
T COG0542 366 VTLSDRYIPDRFLPDKAIDLLDEAGA 391 (786)
T ss_pred HHHHHhhcccCCCCchHHHHHHHHHH
Confidence 98874433 458888865553
No 209
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.80 E-value=4.6e-08 Score=108.76 Aligned_cols=205 Identities=16% Similarity=0.222 Sum_probs=130.9
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh----CCcEEEEe
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML----GFQAIEVN 429 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel----g~~iiEin 429 (790)
.+.+|||.....+++.+-+... .+...++||.|++|+||+.+|++|.... +-++|.+|
T Consensus 76 ~~~~LIG~~~~~~~~~eqik~~------------------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~N 137 (403)
T COG1221 76 ALDDLIGESPSLQELREQIKAY------------------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFN 137 (403)
T ss_pred hhhhhhccCHHHHHHHHHHHhh------------------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEE
Confidence 4678999887777776666651 1346799999999999999999887432 56799999
Q ss_pred CCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHh----------
Q 003873 430 ASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI---------- 499 (790)
Q Consensus 430 aSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i---------- 499 (790)
|+....... +..+.|.. +..+..+......--.......||+|||+.|....+..+..+++.-
T Consensus 138 Ca~~~en~~---~~eLFG~~----kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~ 210 (403)
T COG1221 138 CAAYSENLQ---EAELFGHE----KGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQP 210 (403)
T ss_pred HHHhCcCHH---HHHHhccc----cceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCC
Confidence 987643321 10011100 0001111100000001234569999999999999888888888752
Q ss_pred hcCCCcEEEEecccchhhh-h--hccccccc--cccCCCCH--HHHH----HHHHHHHHHcCCCC---CHHHHHHHHHH-
Q 003873 500 KISKIPIICICNDRYSQKL-K--SLVNYCSD--LRFRKPRK--QEIA----KRLMQIANAEGLEV---NEIALEELADR- 564 (790)
Q Consensus 500 ~~s~~pII~I~nd~~~~~l-~--~L~sR~~~--I~F~~pt~--~ei~----~iL~~I~~~Egi~i---~~~~l~~Ia~~- 564 (790)
....+++||.+|......+ . +|..|+.. |+++++.. .+|. ..|...|.+.++.+ +++++..+...
T Consensus 211 ~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~ 290 (403)
T COG1221 211 RPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYD 290 (403)
T ss_pred cCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 2356678898887665554 5 67776554 55555442 2333 34445566666553 35777777665
Q ss_pred ccCCHHHHHHHHHHHHhcC
Q 003873 565 VNGDIRMAINQLQYMSLSL 583 (790)
Q Consensus 565 s~GDiR~aIn~Lq~~~~~~ 583 (790)
..||+|.+-|.++++|...
T Consensus 291 ~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 291 WPGNIRELKNLVERAVAQA 309 (403)
T ss_pred CCCcHHHHHHHHHHHHHHh
Confidence 4899999999999998763
No 210
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.80 E-value=1.2e-07 Score=113.07 Aligned_cols=212 Identities=15% Similarity=0.144 Sum_probs=119.2
Q ss_pred CccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-------CCcE--
Q 003873 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML-------GFQA-- 425 (790)
Q Consensus 355 l~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel-------g~~i-- 425 (790)
|.+|+||+..+..|...+.+ +...+|||+|++|+|||++|++|++.+ |+.+
T Consensus 3 f~~ivGq~~~~~al~~~av~--------------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c 62 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVD--------------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSC 62 (633)
T ss_pred cchhcChHHHHHHHHHHhhC--------------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCC
Confidence 67999999998887655554 123579999999999999999999988 2211
Q ss_pred --------------------------EEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhcc-ccCCCCCceEEEE
Q 003873 426 --------------------------IEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN-MDRSKHPKTVLIM 478 (790)
Q Consensus 426 --------------------------iEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~-~~~~~~~~~VLII 478 (790)
+.+.++.. ....+|+ ..+...+........ .........||||
T Consensus 63 ~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t-------~~~l~G~---~d~~~~l~~g~~~~~~G~L~~A~~GiL~l 132 (633)
T TIGR02442 63 DPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGAT-------EDRVVGS---LDIERALREGEKAFQPGLLAEAHRGILYI 132 (633)
T ss_pred CCCCccccChhhhhcccccccCCCCeeeCCCCCc-------HHHcCCc---ccHHHHhhcCCeeecCcceeecCCCeEEe
Confidence 11111000 0000111 112222221110000 0001234569999
Q ss_pred ecCCCCCccchhHHHHHHHHhh------------cCCCcEEEEecccchhhhhhccccccc-cccCCCC-HHHHHHHHHH
Q 003873 479 DEVDGMSAGDRGGIADLIASIK------------ISKIPIICICNDRYSQKLKSLVNYCSD-LRFRKPR-KQEIAKRLMQ 544 (790)
Q Consensus 479 DEiD~L~~~~~~~l~~Ll~~i~------------~s~~pII~I~nd~~~~~l~~L~sR~~~-I~F~~pt-~~ei~~iL~~ 544 (790)
|||+.|....+..|..+++.-. ..++.+|++.|.........|+.|+.. |.+..+. .++..+++.+
T Consensus 133 DEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 133 DEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHH
Confidence 9999999988888888876321 122334444442222233567777642 4444333 2332233322
Q ss_pred H-------------------------H----HHcCCCCCHHHHHHHHHHc---cC-CHHHHHHHHHHHH-----hcCCCC
Q 003873 545 I-------------------------A----NAEGLEVNEIALEELADRV---NG-DIRMAINQLQYMS-----LSLSVI 586 (790)
Q Consensus 545 I-------------------------~----~~Egi~i~~~~l~~Ia~~s---~G-DiR~aIn~Lq~~~-----~~~~~i 586 (790)
. + ....+.+++++++.|+..+ +- .+|..+.++..+. .+...|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V 292 (633)
T TIGR02442 213 RLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRV 292 (633)
T ss_pred HHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcC
Confidence 1 0 0124678888888888766 22 4788777775542 236789
Q ss_pred CHHHHHHHHH
Q 003873 587 KYDDIRQRLL 596 (790)
Q Consensus 587 t~~~v~~~~~ 596 (790)
+.++++.++.
T Consensus 293 ~~~Dv~~A~~ 302 (633)
T TIGR02442 293 TAEDVREAAE 302 (633)
T ss_pred CHHHHHHHHH
Confidence 9999987654
No 211
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.79 E-value=2.3e-08 Score=105.28 Aligned_cols=135 Identities=16% Similarity=0.259 Sum_probs=83.5
Q ss_pred hhhcCCCCCccccCC----HHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-
Q 003873 347 TEKYRPKTPNEIVGN----QQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML- 421 (790)
Q Consensus 347 ~eKY~P~sl~dLvG~----e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel- 421 (790)
.+.|++.+|+++... ...+..+..|+..+.. ....++|+|++|||||+++.++|+++
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~------------------~~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDG------------------NIASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhcc------------------CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 456777788887643 3345555555554211 13589999999999999999999988
Q ss_pred --CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--hhHHHHHHH
Q 003873 422 --GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--RGGIADLIA 497 (790)
Q Consensus 422 --g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--~~~l~~Ll~ 497 (790)
|..++.++..+.... +...... .......++.. -....||||||++.....+ ...+..+++
T Consensus 125 ~~g~~v~~it~~~l~~~----l~~~~~~-~~~~~~~~l~~----------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~ 189 (244)
T PRK07952 125 LRGKSVLIITVADIMSA----MKDTFSN-SETSEEQLLND----------LSNVDLLVIDEIGVQTESRYEKVIINQIVD 189 (244)
T ss_pred hcCCeEEEEEHHHHHHH----HHHHHhh-ccccHHHHHHH----------hccCCEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 777877765542111 1100000 00011222222 1234699999998876433 235667777
Q ss_pred HhhcCCCcEEEEecccc
Q 003873 498 SIKISKIPIICICNDRY 514 (790)
Q Consensus 498 ~i~~s~~pII~I~nd~~ 514 (790)
.-...+.|+|+++|-..
T Consensus 190 ~Ry~~~~~tiitSNl~~ 206 (244)
T PRK07952 190 RRSSSKRPTGMLTNSNM 206 (244)
T ss_pred HHHhCCCCEEEeCCCCH
Confidence 65666899999999544
No 212
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.76 E-value=8.5e-08 Score=115.81 Aligned_cols=198 Identities=15% Similarity=0.220 Sum_probs=128.1
Q ss_pred CCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEe
Q 003873 353 KTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVN 429 (790)
Q Consensus 353 ~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEin 429 (790)
..|.+++|+...++.+..-+..+- ....+|||+|++|||||++|++|.... +..++.+|
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a------------------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~ 434 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA------------------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 434 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh------------------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEe
Confidence 367899999988888877777642 134689999999999999999998765 56899999
Q ss_pred CCCCCCchhhhhhcccCCCch-------hHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh--
Q 003873 430 ASDSRGKADAKISKGIGGSNA-------NSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK-- 500 (790)
Q Consensus 430 aSd~rsk~~~~i~~~~g~s~~-------~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~-- 500 (790)
|...... .++..+.+... ..-...+. .....+||||||+.|....+..+..+++.-.
T Consensus 435 c~~~~~~---~~~~~lfg~~~~~~~g~~~~~~g~le-----------~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~ 500 (686)
T PRK15429 435 CAAMPAG---LLESDLFGHERGAFTGASAQRIGRFE-----------LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFE 500 (686)
T ss_pred cccCChh---HhhhhhcCcccccccccccchhhHHH-----------hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEE
Confidence 9864221 12211111000 00001111 1234689999999999988888888876432
Q ss_pred --------cCCCcEEEEecccchhhh------hhccccc--cccccCCCCH--HHHHHHH----HHHHHHcCC---CCCH
Q 003873 501 --------ISKIPIICICNDRYSQKL------KSLVNYC--SDLRFRKPRK--QEIAKRL----MQIANAEGL---EVNE 555 (790)
Q Consensus 501 --------~s~~pII~I~nd~~~~~l------~~L~sR~--~~I~F~~pt~--~ei~~iL----~~I~~~Egi---~i~~ 555 (790)
...+.||++++......+ ..|..|. ..|.++|+.. ++|..++ .+++.+.+. .+++
T Consensus 501 ~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~ 580 (686)
T PRK15429 501 RLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPA 580 (686)
T ss_pred eCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 134568888775443332 2244443 3355655542 3444333 344444443 3789
Q ss_pred HHHHHHHHHc-cCCHHHHHHHHHHHHhc
Q 003873 556 IALEELADRV-NGDIRMAINQLQYMSLS 582 (790)
Q Consensus 556 ~~l~~Ia~~s-~GDiR~aIn~Lq~~~~~ 582 (790)
+++..|.... .||+|++-|.++.++..
T Consensus 581 ~al~~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 581 ETLRTLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 9999998876 89999999999887754
No 213
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=98.76 E-value=3.2e-08 Score=108.24 Aligned_cols=105 Identities=14% Similarity=0.245 Sum_probs=92.4
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecC-CCCcc
Q 003873 177 RGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDE-DIAGA 255 (790)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~-~~g~~ 255 (790)
+..+..-..+.++++.+++....|.+. .+||.|||||.. .++|+++.+.+...|..+..+||..|++|||.. .+...
T Consensus 268 ~s~ir~~a~~~p~~~~nPG~~~~~~~l-v~Gm~v~~~~e~-~~~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~g 345 (377)
T PRK05601 268 RSIIRVDAQEAPRTLENPGTYEPGKGL-VAGMEVVVAPEI-TMDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDG 345 (377)
T ss_pred ccccccccccCCCCCCCCCccCCCCcc-ccCcEEEEeCCc-cCCHHHHHHHHHHccchhhhccccceeEEEeCCCCCccc
Confidence 344555667888888888888777664 899999999999 589999999999999999999999999999986 56678
Q ss_pred hHHHHHHhCCceeCHHHHHHHHhhcCCc
Q 003873 256 KSTKAKELGTPFLTEDGLFDMIRASKPM 283 (790)
Q Consensus 256 K~~kA~~~~i~ii~e~~f~~~l~~~~~~ 283 (790)
|...|..+||++|+|.+|+++|....++
T Consensus 346 k~~~a~~~gipl~~d~~fl~~~~~v~~g 373 (377)
T PRK05601 346 KAMHAQRKGIPLLSDVAFLAAVERVKEG 373 (377)
T ss_pred hhhhhhhcCCCccCHHHHHHHHHHhcCC
Confidence 9999999999999999999999887554
No 214
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.75 E-value=3.1e-09 Score=101.91 Aligned_cols=87 Identities=25% Similarity=0.423 Sum_probs=53.6
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhcc---ccCCCCCceE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN---MDRSKHPKTV 475 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~---~~~~~~~~~V 475 (790)
+|||+||||||||++|+.+|+.++.+++.++++......+ .+... ... ....... ....-....+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~d-l~g~~----~~~-------~~~~~~~~~~l~~a~~~~~i 68 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEED-LIGSY----DPS-------NGQFEFKDGPLVRAMRKGGI 68 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHH-HHCEE----ET--------TTTTCEEE-CCCTTHHEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecccccccc-ceeee----eec-------ccccccccccccccccceeE
Confidence 5899999999999999999999999999998876543321 11110 000 0000000 0000124679
Q ss_pred EEEecCCCCCccchhHHHHHHH
Q 003873 476 LIMDEVDGMSAGDRGGIADLIA 497 (790)
Q Consensus 476 LIIDEiD~L~~~~~~~l~~Ll~ 497 (790)
+||||++.........+..+++
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999999988766666666665
No 215
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.73 E-value=7.4e-07 Score=91.50 Aligned_cols=195 Identities=19% Similarity=0.235 Sum_probs=123.0
Q ss_pred hhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CC
Q 003873 347 TEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GF 423 (790)
Q Consensus 347 ~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~ 423 (790)
+..|-|..+.+|+|-+.+.+.|..-...+-. +.+.+++||+|..|+|||++++++..++ |.
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~----------------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl 114 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAE----------------GLPANNVLLWGARGTGKSSLVKALLNEYADEGL 114 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHc----------------CCcccceEEecCCCCChHHHHHHHHHHHHhcCC
Confidence 4456788999999998888877665555321 2357899999999999999999999888 67
Q ss_pred cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-hhHHHHHHHH-hhc
Q 003873 424 QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-RGGIADLIAS-IKI 501 (790)
Q Consensus 424 ~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-~~~l~~Ll~~-i~~ 501 (790)
++||++-.+.- .+..++..... ...+-|||+|++-.=.+++ ...+..+++- +..
T Consensus 115 rLVEV~k~dl~-----------------~Lp~l~~~Lr~-------~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~ 170 (287)
T COG2607 115 RLVEVDKEDLA-----------------TLPDLVELLRA-------RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEG 170 (287)
T ss_pred eEEEEcHHHHh-----------------hHHHHHHHHhc-------CCceEEEEecCCCCCCCchHHHHHHHHhcCCccc
Confidence 89999876531 23333332211 3456799999875433322 2333344431 111
Q ss_pred CCCcEEE--Eecccch--h----------hh---------hhcccccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 003873 502 SKIPIIC--ICNDRYS--Q----------KL---------KSLVNYCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIA 557 (790)
Q Consensus 502 s~~pII~--I~nd~~~--~----------~l---------~~L~sR~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~ 557 (790)
...-|++ +.|.++. . -+ -+|-.|+. -+.|.+++.++..+++...+...++.++++.
T Consensus 171 rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~ 250 (287)
T COG2607 171 RPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEE 250 (287)
T ss_pred CCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 1111333 3332210 0 00 02233433 4889999999999999999999999998766
Q ss_pred HHHHH-----HHccCCHHHHHHHHHHHHh
Q 003873 558 LEELA-----DRVNGDIRMAINQLQYMSL 581 (790)
Q Consensus 558 l~~Ia-----~~s~GDiR~aIn~Lq~~~~ 581 (790)
++.=| .+.+.+-|-|-..++.++.
T Consensus 251 l~~eAl~WAt~rg~RSGR~A~QF~~~~~g 279 (287)
T COG2607 251 LHAEALQWATTRGGRSGRVAWQFIRDLAG 279 (287)
T ss_pred HHHHHHHHHHhcCCCccHhHHHHHHHHHh
Confidence 65433 2334466666666666553
No 216
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.73 E-value=7.1e-08 Score=108.65 Aligned_cols=157 Identities=20% Similarity=0.217 Sum_probs=90.9
Q ss_pred CccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc-------EEE
Q 003873 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ-------AIE 427 (790)
Q Consensus 355 l~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~-------iiE 427 (790)
++++++.+..++.+...|.. .++++|+||||||||++|+.+|..+... .++
T Consensus 174 l~d~~i~e~~le~l~~~L~~----------------------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----------------------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----------------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 67888889888888777765 4689999999999999999999988532 233
Q ss_pred EeCCCCCCchhhhhhcc----cCCC-chhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-hhHHHHHHHHhh-
Q 003873 428 VNASDSRGKADAKISKG----IGGS-NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-RGGIADLIASIK- 500 (790)
Q Consensus 428 inaSd~rsk~~~~i~~~----~g~s-~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-~~~l~~Ll~~i~- 500 (790)
+..+. +..+ .+... ++-. ....+.+++..+... ...+.||||||+++..... .+.+..+++.-+
T Consensus 232 FHpsy--SYeD-FI~G~rP~~vgy~~~~G~f~~~~~~A~~~------p~~~~vliIDEINRani~kiFGel~~lLE~~~r 302 (459)
T PRK11331 232 FHQSY--SYED-FIQGYRPNGVGFRRKDGIFYNFCQQAKEQ------PEKKYVFIIDEINRANLSKVFGEVMMLMEHDKR 302 (459)
T ss_pred ecccc--cHHH-HhcccCCCCCCeEecCchHHHHHHHHHhc------ccCCcEEEEehhhccCHHHhhhhhhhhcccccc
Confidence 32221 1111 11111 0000 012345555554321 2346799999999887532 455555554210
Q ss_pred --------------------cCCCcEEEEecccc--hhhh-hhccccccccccCC-CCHHHHHHHH
Q 003873 501 --------------------ISKIPIICICNDRY--SQKL-KSLVNYCSDLRFRK-PRKQEIAKRL 542 (790)
Q Consensus 501 --------------------~s~~pII~I~nd~~--~~~l-~~L~sR~~~I~F~~-pt~~ei~~iL 542 (790)
..++-||+++|... ...+ .+|++|+..|.+.+ ++...+...+
T Consensus 303 g~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l 368 (459)
T PRK11331 303 GENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFL 368 (459)
T ss_pred ccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHH
Confidence 11223666766432 1123 56778887777775 3444444443
No 217
>PRK08181 transposase; Validated
Probab=98.73 E-value=3.4e-08 Score=105.55 Aligned_cols=99 Identities=18% Similarity=0.273 Sum_probs=62.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK 473 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~ 473 (790)
..+++|+||||||||+++.+++.++ |+.++++++.+.... +..... ...+..++.. -...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~----l~~a~~---~~~~~~~l~~----------l~~~ 168 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK----LQVARR---ELQLESAIAK----------LDKF 168 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH----HHHHHh---CCcHHHHHHH----------HhcC
Confidence 3679999999999999999999765 778888776532110 000000 0111222222 1234
Q ss_pred eEEEEecCCCCCccc--hhHHHHHHHHhhcCCCcEEEEeccc
Q 003873 474 TVLIMDEVDGMSAGD--RGGIADLIASIKISKIPIICICNDR 513 (790)
Q Consensus 474 ~VLIIDEiD~L~~~~--~~~l~~Ll~~i~~s~~pII~I~nd~ 513 (790)
.+|||||++.+.... ...+..+++.... +.++|+++|-.
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~-~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYE-RRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHh-CCCEEEEcCCC
Confidence 699999999876633 3457777775544 46899988853
No 218
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.72 E-value=9.2e-08 Score=89.16 Aligned_cols=108 Identities=22% Similarity=0.330 Sum_probs=66.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCc---EEEEeCCCCCCchhhh-----h-hcccCCCchhHHHHHHHHhhhhcccc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQ---AIEVNASDSRGKADAK-----I-SKGIGGSNANSIKELVSNEALSANMD 467 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~---iiEinaSd~rsk~~~~-----i-~~~~g~s~~~~i~e~l~~a~~~~~~~ 467 (790)
...++|+|||||||||+++.+|..+... +++++++......... . ...........+...+..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK----- 76 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHh-----
Confidence 3689999999999999999999999765 7888776543221110 0 000111112233333333321
Q ss_pred CCCCCceEEEEecCCCCCccchhHHHH-------HHHHhhcCCCcEEEEecc
Q 003873 468 RSKHPKTVLIMDEVDGMSAGDRGGIAD-------LIASIKISKIPIICICND 512 (790)
Q Consensus 468 ~~~~~~~VLIIDEiD~L~~~~~~~l~~-------Ll~~i~~s~~pII~I~nd 512 (790)
....||||||++.+.......... ...........+|+++|.
T Consensus 77 ---~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 ---LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred ---cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 124799999999998755443332 133334566778888885
No 219
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=98.68 E-value=5.6e-08 Score=83.20 Aligned_cols=76 Identities=41% Similarity=0.541 Sum_probs=68.6
Q ss_pred CCCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCC-CCcchHHHHHHhCCceeCHHHHHHHH
Q 003873 201 APDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDED-IAGAKSTKAKELGTPFLTEDGLFDMI 277 (790)
Q Consensus 201 ~~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~-~g~~K~~kA~~~~i~ii~e~~f~~~l 277 (790)
.+..|.|.+|+| +.+...+|++++.+|+.+||+|...++.+|++||++.. ....|+..|...+++||+++-+.+-|
T Consensus 2 ~~~~F~g~~f~i-~~~~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 2 KPKIFEGCTFCI-SGFDSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDCI 78 (78)
T ss_dssp STTTTTTEEEEE-SSTSSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred CCCCCCCEEEEE-ccCCCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHhC
Confidence 356899999999 66778999999999999999999999999999999987 56689999999999999999887654
No 220
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=8.8e-07 Score=94.70 Aligned_cols=67 Identities=27% Similarity=0.468 Sum_probs=52.5
Q ss_pred ccCCHHHHHHHHHHHHh-hhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCC
Q 003873 358 IVGNQQLVKQLHTWLAH-WNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431 (790)
Q Consensus 358 LvG~e~~i~~L~~wL~~-w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaS 431 (790)
||||+...+.+--.|++ |.+..+... ..+.-.++++|+.||.|+|||-+||.||+..|.+|+-+.|+
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~-------lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEAT 84 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEE-------LRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEAT 84 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHH-------HhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEee
Confidence 89999999999988886 444332221 12234689999999999999999999999999888777664
No 221
>PF13173 AAA_14: AAA domain
Probab=98.64 E-value=1.4e-07 Score=89.48 Aligned_cols=121 Identities=21% Similarity=0.215 Sum_probs=79.3
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhC--CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCce
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLG--FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg--~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~ 474 (790)
.+.++|+||.||||||+++.+++.+. -+++++|..+.+.... . ...+.+.+.+.. .....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~---~-------~~~~~~~~~~~~--------~~~~~ 63 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRL---A-------DPDLLEYFLELI--------KPGKK 63 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHH---h-------hhhhHHHHHHhh--------ccCCc
Confidence 36899999999999999999998886 7888898876532110 0 000222222210 12457
Q ss_pred EEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchh---hhhhccccccccccCCCCHHHH
Q 003873 475 VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQ---KLKSLVNYCSDLRFRKPRKQEI 538 (790)
Q Consensus 475 VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~---~l~~L~sR~~~I~F~~pt~~ei 538 (790)
+||||||+.+.. -...+..+.+. ..++.||++++..... ....+..|...+.+.|++-.|+
T Consensus 64 ~i~iDEiq~~~~-~~~~lk~l~d~--~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 64 YIFIDEIQYLPD-WEDALKFLVDN--GPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEEEehhhhhcc-HHHHHHHHHHh--ccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 999999999863 33444444442 2457888887753221 2356788999999999987764
No 222
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.62 E-value=3.1e-08 Score=93.46 Aligned_cols=110 Identities=23% Similarity=0.341 Sum_probs=65.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh--------CCcEEEEeCCCCCCch--hhhhhcccCCC-----chhHHHHHHHHhh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML--------GFQAIEVNASDSRGKA--DAKISKGIGGS-----NANSIKELVSNEA 461 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel--------g~~iiEinaSd~rsk~--~~~i~~~~g~s-----~~~~i~e~l~~a~ 461 (790)
.+.++|+||+|+|||++++.+++.+ ...++.+++....+.. ...+...++.. ....+.+.+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4789999999999999999999988 6788888776544221 11222222211 1122222222221
Q ss_pred hhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccch
Q 003873 462 LSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYS 515 (790)
Q Consensus 462 ~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~ 515 (790)
. .....+|||||+|.+. ....+..|........++||+++++...
T Consensus 84 ~-------~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~~l~ 128 (131)
T PF13401_consen 84 D-------RRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTPELE 128 (131)
T ss_dssp H-------HCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESSTTT
T ss_pred H-------hcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEEChhhH
Confidence 1 1222699999999984 2455555655556788899999987443
No 223
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.62 E-value=2.4e-07 Score=101.83 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=65.4
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCce
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~ 474 (790)
.+++|+||+|+|||+|+.++|+++ |+.++++++.+.-.. +........ ......+.. -..-.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~----l~~~~~~~~-~~~~~~~~~----------l~~~D 248 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI----LREIRFNND-KELEEVYDL----------LINCD 248 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH----HHHHHhccc-hhHHHHHHH----------hccCC
Confidence 689999999999999999999987 788888877643110 100000000 001111111 12236
Q ss_pred EEEEecCCCCCc--cchhHHHHHHHHhhcCCCcEEEEecccc
Q 003873 475 VLIMDEVDGMSA--GDRGGIADLIASIKISKIPIICICNDRY 514 (790)
Q Consensus 475 VLIIDEiD~L~~--~~~~~l~~Ll~~i~~s~~pII~I~nd~~ 514 (790)
+|||||+..... .....+..+++.......|+|+++|-..
T Consensus 249 LLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~ 290 (329)
T PRK06835 249 LLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSL 290 (329)
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCH
Confidence 999999976644 3346677777766666789999998544
No 224
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.61 E-value=4.7e-08 Score=97.68 Aligned_cols=102 Identities=24% Similarity=0.357 Sum_probs=64.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCC----cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGF----QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHP 472 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~----~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~ 472 (790)
..++||.||+|||||.+|+++|+.+.. .++.+|++......+ . ...+..++.....+.. ...
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~--~--------~~~~~~l~~~~~~~v~----~~~ 68 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDD--V--------ESSVSKLLGSPPGYVG----AEE 68 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHH--C--------SCHCHHHHHHTTCHHH----HHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccch--H--------Hhhhhhhhhcccceee----ccc
Confidence 358999999999999999999999996 899999986544110 0 0112222322211110 011
Q ss_pred ceEEEEecCCCCCc-----------cchhHHHHHHHHh----------hcCCCcEEEEecc
Q 003873 473 KTVLIMDEVDGMSA-----------GDRGGIADLIASI----------KISKIPIICICND 512 (790)
Q Consensus 473 ~~VLIIDEiD~L~~-----------~~~~~l~~Ll~~i----------~~s~~pII~I~nd 512 (790)
..||+|||||.+.. ..++.|+.+++.- ...++-|||++|-
T Consensus 69 ~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~ 129 (171)
T PF07724_consen 69 GGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNF 129 (171)
T ss_dssp HTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESS
T ss_pred hhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccc
Confidence 23999999999998 6667777777532 1234456666663
No 225
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.61 E-value=3.7e-07 Score=104.62 Aligned_cols=204 Identities=12% Similarity=0.188 Sum_probs=123.1
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeC
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNA 430 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEina 430 (790)
.+.+++|.....+.+...+..-- .....++|+|++|+||+++|+.+.... +.+++.+||
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a------------------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c 198 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA------------------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINC 198 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh------------------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEEC
Confidence 34568888777777776665410 134678999999999999999998765 357899998
Q ss_pred CCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh----------
Q 003873 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK---------- 500 (790)
Q Consensus 431 Sd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~---------- 500 (790)
...... .++..+.+.....+ ..+..............+||||||+.|+...+..+..+++.-.
T Consensus 199 ~~~~~~---~~~~~lfg~~~~~~----~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 199 AAIPEN---LLESELFGYEKGAF----TGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred CCCChH---HHHHHhcCCCCCCc----CCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCcee
Confidence 864221 22221111000000 0000000000012335689999999999988888888776422
Q ss_pred cCCCcEEEEecccchhhh------hhccccccc--cccCCCCH--HHHHH----HHHHHHHHcC---CCCCHHHHHHHHH
Q 003873 501 ISKIPIICICNDRYSQKL------KSLVNYCSD--LRFRKPRK--QEIAK----RLMQIANAEG---LEVNEIALEELAD 563 (790)
Q Consensus 501 ~s~~pII~I~nd~~~~~l------~~L~sR~~~--I~F~~pt~--~ei~~----iL~~I~~~Eg---i~i~~~~l~~Ia~ 563 (790)
...+.||++++......+ +.|..|... |.++|+.. ++|.. +|...+...+ ..++++++..|..
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 351 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEA 351 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHh
Confidence 124567777775443322 234455443 44444432 23333 3334444434 4589999999988
Q ss_pred Hc-cCCHHHHHHHHHHHHhc
Q 003873 564 RV-NGDIRMAINQLQYMSLS 582 (790)
Q Consensus 564 ~s-~GDiR~aIn~Lq~~~~~ 582 (790)
.. .||+|++-|.++.++..
T Consensus 352 ~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 352 HAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred CCCCChHHHHHHHHHHHHHh
Confidence 77 89999999999887754
No 226
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.58 E-value=1.1e-06 Score=94.23 Aligned_cols=182 Identities=19% Similarity=0.267 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHH--h--CCcE-EEEeCCCCCC
Q 003873 361 NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM--L--GFQA-IEVNASDSRG 435 (790)
Q Consensus 361 ~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAke--l--g~~i-iEinaSd~rs 435 (790)
++..+++|..+|..- ....+.+.|+|++|+|||++|..+++. . .|+. +.++.+....
T Consensus 1 re~~~~~l~~~L~~~------------------~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~ 62 (287)
T PF00931_consen 1 REKEIEKLKDWLLDN------------------SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPS 62 (287)
T ss_dssp -HHHHHHHHHHHHTT------------------TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SC
T ss_pred CHHHHHHHHHHhhCC------------------CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccc
Confidence 356788999998871 034689999999999999999999977 3 3443 3344443222
Q ss_pred chh--hhhhcccCCC--------chhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHh--hcCC
Q 003873 436 KAD--AKISKGIGGS--------NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI--KISK 503 (790)
Q Consensus 436 k~~--~~i~~~~g~s--------~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i--~~s~ 503 (790)
... ..+...++.. ........+.... ...+.+||+|+++... .+..+...+ ....
T Consensus 63 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L--------~~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~~ 129 (287)
T PF00931_consen 63 LEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL--------KDKRCLLVLDDVWDEE-----DLEELREPLPSFSSG 129 (287)
T ss_dssp CHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH--------CCTSEEEEEEEE-SHH-----HH-------HCHHSS
T ss_pred cccccccccccccccccccccccccccccccchhhh--------ccccceeeeeeecccc-----ccccccccccccccc
Confidence 211 1122222211 1222223332221 2347899999988654 222222222 1235
Q ss_pred CcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHccCCHHHHHHHH
Q 003873 504 IPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEG---LEVNEIALEELADRVNGDIRMAINQL 576 (790)
Q Consensus 504 ~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Eg---i~i~~~~l~~Ia~~s~GDiR~aIn~L 576 (790)
+.||+++-+. .....+...+..+.+.+++.++....+...+.... ....++....|++.++|-+-. |.++
T Consensus 130 ~kilvTTR~~--~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-l~~~ 202 (287)
T PF00931_consen 130 SKILVTTRDR--SVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLA-LKLI 202 (287)
T ss_dssp -EEEEEESCG--GGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHH-HHHH
T ss_pred cccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 6677766542 22222222266788999999999999998865443 112245678999999876544 4444
No 227
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=98.58 E-value=5.2e-08 Score=80.80 Aligned_cols=62 Identities=35% Similarity=0.603 Sum_probs=51.7
Q ss_pred cEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHH
Q 003873 208 LTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTED 271 (790)
Q Consensus 208 ~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~ 271 (790)
.+||||| |..-+|++++.++..+||.+...++++|++||++... +.|+++|.+.||+|++.+
T Consensus 1 ~~i~~sg-~~~~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~-~~K~~~A~~~gi~vV~~~ 62 (63)
T PF12738_consen 1 VVICFSG-FSGKERSQLRKLIEALGGKYSKDLTKKTTHLICSSPE-GKKYRKAKEWGIPVVSPD 62 (63)
T ss_dssp -EEEEEE-B-TTTCCHHHHHHHCTT-EEESSSSTT-SEEEEES---HHHHHHHHHCTSEEEEHH
T ss_pred CEEEECC-CCHHHHHHHHHHHHHCCCEEeccccCCceEEEEeCCC-cHHHHHHHHCCCcEECCC
Confidence 3799999 5567999999999999999999999999999996554 499999999999999854
No 228
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=8.8e-07 Score=103.05 Aligned_cols=155 Identities=21% Similarity=0.380 Sum_probs=99.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceE
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTV 475 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~V 475 (790)
....+||+|+|||||||+++++|+++|.++++++|....... .+.....+..++.++. ...+.|
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s--------~~~~etkl~~~f~~a~--------~~~pav 493 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAES--------ASHTETKLQAIFSRAR--------RCSPAV 493 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcc--------cchhHHHHHHHHHHHh--------hcCceE
Confidence 457899999999999999999999999999999885432111 1111234555666654 235689
Q ss_pred EEEecCCCCCccch-hH-------HHHHHH--HhhcCCCcEEEEecccchhhhhh-cccc-ccccccCCCCHHHHHHHHH
Q 003873 476 LIMDEVDGMSAGDR-GG-------IADLIA--SIKISKIPIICICNDRYSQKLKS-LVNY-CSDLRFRKPRKQEIAKRLM 543 (790)
Q Consensus 476 LIIDEiD~L~~~~~-~~-------l~~Ll~--~i~~s~~pII~I~nd~~~~~l~~-L~sR-~~~I~F~~pt~~ei~~iL~ 543 (790)
||+-.+|.+..... +. ++.++. .......++|++|+......+++ +++- .+.|.+..++.++..++|+
T Consensus 494 ifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq 573 (953)
T KOG0736|consen 494 LFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQ 573 (953)
T ss_pred EEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHH
Confidence 99999998765222 21 222221 12235566777777555555654 4333 3458889999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHccC
Q 003873 544 QIANAEGLEVNEIALEELADRVNG 567 (790)
Q Consensus 544 ~I~~~Egi~i~~~~l~~Ia~~s~G 567 (790)
.+.....+. .+..+..++..+.|
T Consensus 574 ~y~~~~~~n-~~v~~k~~a~~t~g 596 (953)
T KOG0736|consen 574 WYLNHLPLN-QDVNLKQLARKTSG 596 (953)
T ss_pred HHHhccccc-hHHHHHHHHHhcCC
Confidence 887654432 12234455555544
No 229
>PRK06526 transposase; Provisional
Probab=98.55 E-value=9.3e-08 Score=101.54 Aligned_cols=100 Identities=19% Similarity=0.247 Sum_probs=58.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK 473 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~ 473 (790)
..+++|+||||+|||++|.+|+.++ |+.++.+++.+.-. .+.... ....+...+.. -...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~----~l~~~~---~~~~~~~~l~~----------l~~~ 160 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVA----RLAAAH---HAGRLQAELVK----------LGRY 160 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHH----HHHHHH---hcCcHHHHHHH----------hccC
Confidence 4689999999999999999998775 66665554432100 000000 00011111211 1234
Q ss_pred eEEEEecCCCCCcc--chhHHHHHHHHhhcCCCcEEEEecccc
Q 003873 474 TVLIMDEVDGMSAG--DRGGIADLIASIKISKIPIICICNDRY 514 (790)
Q Consensus 474 ~VLIIDEiD~L~~~--~~~~l~~Ll~~i~~s~~pII~I~nd~~ 514 (790)
.+|||||++.+... .+..+..+++.... +.++|+++|-..
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~-~~s~IitSn~~~ 202 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYE-RASLIVTSNKPF 202 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHh-cCCEEEEcCCCH
Confidence 69999999987643 33456666665333 357888888543
No 230
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.54 E-value=2.1e-06 Score=99.06 Aligned_cols=211 Identities=14% Similarity=0.230 Sum_probs=127.5
Q ss_pred CccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCC
Q 003873 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNAS 431 (790)
Q Consensus 355 l~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaS 431 (790)
+.+++|.......+...+...- .....+||+|++|||||++|+++.... +..++.+||+
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~------------------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~ 198 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLS------------------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMA 198 (469)
T ss_pred cccceecCHHHHHHHHHHHHHh------------------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCC
Confidence 4578898877777766665411 234689999999999999999998876 4578999998
Q ss_pred CCCCchhhhhhcccCCCchhHHHHHHHHh-hhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh----------
Q 003873 432 DSRGKADAKISKGIGGSNANSIKELVSNE-ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK---------- 500 (790)
Q Consensus 432 d~rsk~~~~i~~~~g~s~~~~i~e~l~~a-~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~---------- 500 (790)
..... .++..+.+.....+ ..+ ...... ........||||||+.|....+..+..+++.-.
T Consensus 199 ~~~~~---~~~~~lfg~~~g~~----~~~~~~~~g~-~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 199 AIPKD---LIESELFGHEKGAF----TGANTIRQGR-FEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred CCCHH---HHHHHhcCCCCCCC----CCCCcCCCCC-eeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeE
Confidence 65221 11111111000000 000 000000 001234579999999999988887777776422
Q ss_pred cCCCcEEEEecccchhh------hhhcccccc--ccccCCCCH--HHHHHHHH----HHHHHcCC---CCCHHHHHHHHH
Q 003873 501 ISKIPIICICNDRYSQK------LKSLVNYCS--DLRFRKPRK--QEIAKRLM----QIANAEGL---EVNEIALEELAD 563 (790)
Q Consensus 501 ~s~~pII~I~nd~~~~~------l~~L~sR~~--~I~F~~pt~--~ei~~iL~----~I~~~Egi---~i~~~~l~~Ia~ 563 (790)
..++.||++++...... ...|..|+. .|.++|+.. +++..++. ..+...+. .++++++..|..
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 350 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR 350 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 12346777776544322 145556643 455555442 34443333 33443333 479999999998
Q ss_pred Hc-cCCHHHHHHHHHHHHhc--CCCCCHHHH
Q 003873 564 RV-NGDIRMAINQLQYMSLS--LSVIKYDDI 591 (790)
Q Consensus 564 ~s-~GDiR~aIn~Lq~~~~~--~~~it~~~v 591 (790)
+. .||+|++-|.++.++.. +..|+.+++
T Consensus 351 ~~wpgNv~eL~~~i~~~~~~~~~~~i~~~~l 381 (469)
T PRK10923 351 LAWPGNVRQLENTCRWLTVMAAGQEVLIQDL 381 (469)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCCcccHHHC
Confidence 76 89999999999887754 334555554
No 231
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.53 E-value=2.1e-06 Score=101.94 Aligned_cols=124 Identities=12% Similarity=0.120 Sum_probs=76.3
Q ss_pred ceEEEEecCCCCCccchhHHHHHHHHhh--------------------cCCCcEEEEeccc-chhhhhhcccccc----c
Q 003873 473 KTVLIMDEVDGMSAGDRGGIADLIASIK--------------------ISKIPIICICNDR-YSQKLKSLVNYCS----D 527 (790)
Q Consensus 473 ~~VLIIDEiD~L~~~~~~~l~~Ll~~i~--------------------~s~~pII~I~nd~-~~~~l~~L~sR~~----~ 527 (790)
..+|||||++.|....+..|..+++.-+ ..++.||+++|.. .....++|+.|+. .
T Consensus 218 gGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~v~ 297 (608)
T TIGR00764 218 KGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYGYE 297 (608)
T ss_pred CCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCeEE
Confidence 4799999999999877777777775321 0123356666643 2233466777765 2
Q ss_pred cccC---CCCHHH---HHHHHHHHHHHcC-C-CCCHHHHHHHHHHc----------cCCHHHHHHHHHHH---Hh--cCC
Q 003873 528 LRFR---KPRKQE---IAKRLMQIANAEG-L-EVNEIALEELADRV----------NGDIRMAINQLQYM---SL--SLS 584 (790)
Q Consensus 528 I~F~---~pt~~e---i~~iL~~I~~~Eg-i-~i~~~~l~~Ia~~s----------~GDiR~aIn~Lq~~---~~--~~~ 584 (790)
+.|. +.+.+. +..++.+.+.+.| + .++++++..|++.+ ..+.|.+-++|+.+ +. ...
T Consensus 298 v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~ 377 (608)
T TIGR00764 298 VYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKV 377 (608)
T ss_pred EEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCc
Confidence 3332 334444 3455555566663 2 48999999998643 23577777777554 22 245
Q ss_pred CCCHHHHHHHHH
Q 003873 585 VIKYDDIRQRLL 596 (790)
Q Consensus 585 ~it~~~v~~~~~ 596 (790)
.|+.+++.+++.
T Consensus 378 ~I~~ehV~~Ai~ 389 (608)
T TIGR00764 378 YVTAEHVLKAKK 389 (608)
T ss_pred eecHHHHHHHHH
Confidence 788999887653
No 232
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.53 E-value=9e-07 Score=100.42 Aligned_cols=209 Identities=15% Similarity=0.165 Sum_probs=134.2
Q ss_pred hcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcE
Q 003873 349 KYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQA 425 (790)
Q Consensus 349 KY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~i 425 (790)
-++.-+|++|+|.......+..-.... ....-.+||.|.+||||..+|+++.+.- +.+|
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~------------------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PF 299 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRI------------------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPF 299 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhh------------------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCe
Confidence 556678999999888777776665551 1245789999999999999999998766 6789
Q ss_pred EEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh-----
Q 003873 426 IEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK----- 500 (790)
Q Consensus 426 iEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~----- 500 (790)
|.+||..... ..+++.+.|.....|........ .... ......-||+|||.-|+-.-|..|+.+++.-+
T Consensus 300 IaiNCaAiPe---~LlESELFGye~GAFTGA~~~GK--~Glf-E~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG 373 (560)
T COG3829 300 IAINCAAIPE---TLLESELFGYEKGAFTGASKGGK--PGLF-ELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVG 373 (560)
T ss_pred EEEecccCCH---HHHHHHHhCcCCccccccccCCC--Ccce-eeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecC
Confidence 9999986422 24555444433322221111100 0000 01234579999999999988888888886421
Q ss_pred -----cCCCcEEEEecccchhhh------hhccccccc--cccCCCC--HHHHHH----HHHHHHHHcCC--C-CCHHHH
Q 003873 501 -----ISKIPIICICNDRYSQKL------KSLVNYCSD--LRFRKPR--KQEIAK----RLMQIANAEGL--E-VNEIAL 558 (790)
Q Consensus 501 -----~s~~pII~I~nd~~~~~l------~~L~sR~~~--I~F~~pt--~~ei~~----iL~~I~~~Egi--~-i~~~~l 558 (790)
..++.||..+|....+.+ ..|.-|..+ |.++|+- +++|.. .|.+...+.+. . ++++++
T Consensus 374 ~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~ 453 (560)
T COG3829 374 GTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDAL 453 (560)
T ss_pred CCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHH
Confidence 234567777886665555 234455444 3334332 233333 33333444443 2 789999
Q ss_pred HHHHHHc-cCCHHHHHHHHHHHHh
Q 003873 559 EELADRV-NGDIRMAINQLQYMSL 581 (790)
Q Consensus 559 ~~Ia~~s-~GDiR~aIn~Lq~~~~ 581 (790)
..|..+. .||+|.+-|+++.+..
T Consensus 454 ~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 454 ALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHHhCCCCchHHHHHHHHHHHHh
Confidence 9988876 8999999999987763
No 233
>PRK06921 hypothetical protein; Provisional
Probab=98.52 E-value=4.1e-07 Score=97.29 Aligned_cols=99 Identities=15% Similarity=0.228 Sum_probs=61.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh----CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML----GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHP 472 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel----g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~ 472 (790)
...++|+||+|+|||+|+.++|+++ |+.++++...+... .+...+ ..+.+.+.. -..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~----~l~~~~-----~~~~~~~~~----------~~~ 177 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG----DLKDDF-----DLLEAKLNR----------MKK 177 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH----HHHHHH-----HHHHHHHHH----------hcC
Confidence 5789999999999999999999886 66777777543210 000000 011111111 123
Q ss_pred ceEEEEecCCC-------CCccchhHHHHHHHHhhcCCCcEEEEecccc
Q 003873 473 KTVLIMDEVDG-------MSAGDRGGIADLIASIKISKIPIICICNDRY 514 (790)
Q Consensus 473 ~~VLIIDEiD~-------L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~ 514 (790)
..||||||++. +.......+..+++.......|+|+++|-..
T Consensus 178 ~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~~ 226 (266)
T PRK06921 178 VEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELTI 226 (266)
T ss_pred CCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCCH
Confidence 46999999943 1222234577777766566789988888543
No 234
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.52 E-value=1.3e-06 Score=96.17 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=48.7
Q ss_pred cCCCCCc-cccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 350 YRPKTPN-EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 350 Y~P~sl~-dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
++-.-|+ +++|+++.+++|..|+..|.... ....+.++|+||||+||||+|++||+.++.
T Consensus 44 ~~y~~F~~~~~G~~~~i~~lv~~l~~~a~g~--------------~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 44 KRYRFFDHDFFGMEEAIERFVNYFKSAAQGL--------------EERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred eeccccchhccCcHHHHHHHHHHHHHHHhcC--------------CCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4444566 89999999999999999975310 123578999999999999999999999953
No 235
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.52 E-value=3.7e-07 Score=99.57 Aligned_cols=132 Identities=15% Similarity=0.220 Sum_probs=77.5
Q ss_pred hcCCCCCccccCCH----HHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---
Q 003873 349 KYRPKTPNEIVGNQ----QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML--- 421 (790)
Q Consensus 349 KY~P~sl~dLvG~e----~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel--- 421 (790)
.|...+|+++.... ........|+..+.. ....++++|+||+|+|||+|+.++|+++
T Consensus 120 ~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~----------------~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~ 183 (306)
T PRK08939 120 DLLQASLADIDLDDRDRLDALMAALDFLEAYPP----------------GEKVKGLYLYGDFGVGKSYLLAAIANELAKK 183 (306)
T ss_pred hHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhc----------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34456788777543 334444555554211 0135799999999999999999999998
Q ss_pred CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--hh-HHHHHHHH
Q 003873 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--RG-GIADLIAS 498 (790)
Q Consensus 422 g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--~~-~l~~Ll~~ 498 (790)
|+.+..++..+.-. .+...... ..+.+++.. -....||||||+......+ +. .+..+++.
T Consensus 184 g~~v~~~~~~~l~~----~lk~~~~~---~~~~~~l~~----------l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~ 246 (306)
T PRK08939 184 GVSSTLLHFPEFIR----ELKNSISD---GSVKEKIDA----------VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQY 246 (306)
T ss_pred CCCEEEEEHHHHHH----HHHHHHhc---CcHHHHHHH----------hcCCCEEEEecCCCccccHHHHHHHHHHHHHH
Confidence 77777776653211 11111110 112223322 1234699999997654432 22 23345454
Q ss_pred hhcCCCcEEEEeccc
Q 003873 499 IKISKIPIICICNDR 513 (790)
Q Consensus 499 i~~s~~pII~I~nd~ 513 (790)
-...+.|+|+++|-.
T Consensus 247 R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 247 RMQEELPTFFTSNFD 261 (306)
T ss_pred HHHCCCeEEEECCCC
Confidence 334678999999954
No 236
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=98.52 E-value=5.2e-07 Score=74.65 Aligned_cols=71 Identities=48% Similarity=0.696 Sum_probs=64.5
Q ss_pred CcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHH
Q 003873 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMI 277 (790)
Q Consensus 207 g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l 277 (790)
|.+|+|+|.+...+|.+++++++.+||++...++..+++||++......++..|...+++|++++-+.+-+
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~ 71 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCL 71 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHh
Confidence 67999999987789999999999999999999999999999998777666889999999999998887654
No 237
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.52 E-value=3.2e-07 Score=93.59 Aligned_cols=46 Identities=30% Similarity=0.436 Sum_probs=37.8
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
+|+||+||+..++.|.-.... .+++||+||||+|||++|+.+...|
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG----------------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG----------------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC----------------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHcC----------------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 488999999999998877765 4799999999999999999999776
No 238
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.51 E-value=3.1e-06 Score=100.35 Aligned_cols=51 Identities=22% Similarity=0.456 Sum_probs=45.0
Q ss_pred CCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 352 PKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 352 P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
|..+++++||++.++.|..++.. .+.+||+|||||||||+++++++.+.+.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~----------------------~~~~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQ----------------------RRHVMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHh----------------------CCeEEEECCCCCcHHHHHHHHHHHcChH
Confidence 67899999999999999888876 2479999999999999999999988643
No 239
>PRK15115 response regulator GlrR; Provisional
Probab=98.50 E-value=1.4e-06 Score=99.96 Aligned_cols=189 Identities=15% Similarity=0.176 Sum_probs=110.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK 473 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~ 473 (790)
...++|+|++|+|||++|+.+.+.. +..++.+||...... .++..+.+.... .+..+.............
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~---~~~~~lfg~~~~----~~~~~~~~~~g~~~~a~~ 229 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQ---LLESELFGHARG----AFTGAVSNREGLFQAAEG 229 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHH---HHHHHhcCCCcC----CCCCCccCCCCcEEECCC
Confidence 4679999999999999999998775 468999998864221 111111110000 000000000000002234
Q ss_pred eEEEEecCCCCCccchhHHHHHHHHhhc----------CCCcEEEEecccchhhh------hhcccccc--ccccCCCCH
Q 003873 474 TVLIMDEVDGMSAGDRGGIADLIASIKI----------SKIPIICICNDRYSQKL------KSLVNYCS--DLRFRKPRK 535 (790)
Q Consensus 474 ~VLIIDEiD~L~~~~~~~l~~Ll~~i~~----------s~~pII~I~nd~~~~~l------~~L~sR~~--~I~F~~pt~ 535 (790)
..||||||+.|+...+..+..+++.-.. .++.||++++......+ ..|..|.. .|.++|+..
T Consensus 230 gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~ 309 (444)
T PRK15115 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAE 309 (444)
T ss_pred CEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHh
Confidence 5899999999999888888877764321 24467776664332222 22333322 344444432
Q ss_pred --HHHHHHHH----HHHHHcC---CCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhc--CCCCCHHHHH
Q 003873 536 --QEIAKRLM----QIANAEG---LEVNEIALEELADRV-NGDIRMAINQLQYMSLS--LSVIKYDDIR 592 (790)
Q Consensus 536 --~ei~~iL~----~I~~~Eg---i~i~~~~l~~Ia~~s-~GDiR~aIn~Lq~~~~~--~~~it~~~v~ 592 (790)
+++..++. ..+...+ ..++++++..|..+. .||+|++.|.|+.++.. +..|+.+++.
T Consensus 310 R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~~i~~~~l~ 378 (444)
T PRK15115 310 RTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVE 378 (444)
T ss_pred ccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCccChhhhh
Confidence 23433333 3333333 248999999999988 99999999999887653 3346655543
No 240
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=4.3e-06 Score=86.72 Aligned_cols=163 Identities=10% Similarity=0.062 Sum_probs=108.8
Q ss_pred CCCcEEEEECCCC-CChHHHHHHHHHHhCCc---------EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhc
Q 003873 395 SAEKAAILSGSPG-MGKTTAAKLVCQMLGFQ---------AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA 464 (790)
Q Consensus 395 ~~~~~lLLsGPpG-tGKTTlA~~lAkelg~~---------iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~ 464 (790)
...+++||+|..+ .||..++..+++.+.+. ++.+.+.....+ .-..-..++++++.......+
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~-------~~~~I~IdqIReL~~~l~~~p 85 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATS-------NAKNISIEQIRKLQDFLSKTS 85 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccc-------cCCcccHHHHHHHHHHHhhCc
Confidence 3579999999998 99999999998888543 222221100000 001123567777766554332
Q ss_pred cccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHH
Q 003873 465 NMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544 (790)
Q Consensus 465 ~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~ 544 (790)
..+..+|+||+++|.|...+.++++.+++ +.+...++++.+......+++++|||..+.|..+......+....
T Consensus 86 ----~~g~~KViII~~ae~mt~~AANALLKtLE--EPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~~~~ 159 (263)
T PRK06581 86 ----AISGYKVAIIYSAELMNLNAANSCLKILE--DAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNELYSQ 159 (263)
T ss_pred ----ccCCcEEEEEechHHhCHHHHHHHHHhhc--CCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHHHHH
Confidence 25677899999999999988888888887 344444444444457788899999999999999998877766654
Q ss_pred HHHHcCCCCCHHHHHHHHHHccCCHHHHH
Q 003873 545 IANAEGLEVNEIALEELADRVNGDIRMAI 573 (790)
Q Consensus 545 I~~~Egi~i~~~~l~~Ia~~s~GDiR~aI 573 (790)
.+. -..+...++.|.+...-|....+
T Consensus 160 ~~~---p~~~~~~l~~i~~~~~~d~~~w~ 185 (263)
T PRK06581 160 FIQ---PIADNKTLDFINRFTTKDRELWL 185 (263)
T ss_pred hcc---cccccHHHHHHHHHhhhhHHHHH
Confidence 331 12344557777777655554433
No 241
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.48 E-value=1.5e-06 Score=92.91 Aligned_cols=95 Identities=17% Similarity=0.154 Sum_probs=74.1
Q ss_pred cCCCcEEEEec-ccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHccCCHHHHH
Q 003873 501 ISKIPIICICN-DRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAE------GLEVNEIALEELADRVNGDIRMAI 573 (790)
Q Consensus 501 ~s~~pII~I~n-d~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~E------gi~i~~~~l~~Ia~~s~GDiR~aI 573 (790)
...+.+|..++ +.+....++|++||.+|.|.+++.+++..+|++.+..+ .+.+++++++.|++.++||.|.+|
T Consensus 6 ~G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aL 85 (300)
T PRK14700 6 SGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKIL 85 (300)
T ss_pred CCcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHH
Confidence 33444554444 34555669999999999999999999999999988752 367999999999999999999999
Q ss_pred HHHHHHHhc---CC--CCCHHHHHHHH
Q 003873 574 NQLQYMSLS---LS--VIKYDDIRQRL 595 (790)
Q Consensus 574 n~Lq~~~~~---~~--~it~~~v~~~~ 595 (790)
|+|+.++.. .. .||.+.+++.+
T Consensus 86 N~LE~a~~~~~~~~~~~it~~~~~~~~ 112 (300)
T PRK14700 86 NLLERMFLISTRGDEIYLNKELFDQAV 112 (300)
T ss_pred HHHHHHHhhccccCCCccCHHHHHHHH
Confidence 999996642 11 26777776654
No 242
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.48 E-value=1.7e-06 Score=96.96 Aligned_cols=203 Identities=15% Similarity=0.185 Sum_probs=131.6
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeC
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNA 430 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEina 430 (790)
.+.+|||+......+..-+.-- . ...-.|||.|.+||||-..|++|.+.- .-+++.+||
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~V----A--------------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NC 282 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVV----A--------------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNC 282 (550)
T ss_pred ccccceecCHHHHHHHHHHHHH----h--------------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeec
Confidence 4578999998888887776651 1 234689999999999999999999876 467999999
Q ss_pred CCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh----------
Q 003873 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK---------- 500 (790)
Q Consensus 431 Sd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~---------- 500 (790)
...-.. .+++.+.|.....|...+..-.-.+. ...+.-||+|||.-|+-.-|..++.+++.-+
T Consensus 283 AAlPes---LlESELFGHeKGAFTGA~~~r~GrFE----lAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 283 AALPES---LLESELFGHEKGAFTGAINTRRGRFE----LADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred cccchH---HHHHHHhcccccccccchhccCccee----ecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCcee
Confidence 865322 34444433332222222222111111 1334579999999999988888888776432
Q ss_pred cCCCcEEEEecccchhhh------hhcccccccccc--CCCC-----HHHHH-HHHHHHHHHcCC---CCCHHHHHHHHH
Q 003873 501 ISKIPIICICNDRYSQKL------KSLVNYCSDLRF--RKPR-----KQEIA-KRLMQIANAEGL---EVNEIALEELAD 563 (790)
Q Consensus 501 ~s~~pII~I~nd~~~~~l------~~L~sR~~~I~F--~~pt-----~~ei~-~iL~~I~~~Egi---~i~~~~l~~Ia~ 563 (790)
.-.+.||+.+|-.....+ ..|..|..++.+ +|+- .-.+. .++++++.+.|. .+++++++.|..
T Consensus 356 kVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 356 KVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred EEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 223457777775443333 234455444333 3332 12233 344555555554 589999999998
Q ss_pred Hc-cCCHHHHHHHHHHHHh
Q 003873 564 RV-NGDIRMAINQLQYMSL 581 (790)
Q Consensus 564 ~s-~GDiR~aIn~Lq~~~~ 581 (790)
.. .||+|.+-|.++.+++
T Consensus 436 y~wPGNVRELen~veRavl 454 (550)
T COG3604 436 YEWPGNVRELENVVERAVL 454 (550)
T ss_pred CCCCCcHHHHHHHHHHHHH
Confidence 75 8999999999988775
No 243
>PF05729 NACHT: NACHT domain
Probab=98.47 E-value=1.1e-06 Score=85.65 Aligned_cols=142 Identities=18% Similarity=0.268 Sum_probs=81.2
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCC--------c-EEEEeCCCCCCchhh-hhhcccC---CCchhHHHHHHHHhhhhc
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGF--------Q-AIEVNASDSRGKADA-KISKGIG---GSNANSIKELVSNEALSA 464 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~--------~-iiEinaSd~rsk~~~-~i~~~~g---~s~~~~i~e~l~~a~~~~ 464 (790)
|.++|+|+||+||||+++.++..+-. . ++.++..+....... .+...+. ......+...+....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--- 77 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELL--- 77 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHH---
Confidence 46899999999999999999987711 1 223333322111100 1111110 000111111111110
Q ss_pred cccCCCCCceEEEEecCCCCCccchh----HHH----HHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHH
Q 003873 465 NMDRSKHPKTVLIMDEVDGMSAGDRG----GIA----DLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQ 536 (790)
Q Consensus 465 ~~~~~~~~~~VLIIDEiD~L~~~~~~----~l~----~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ 536 (790)
......+||||-+|.+...... .+. .++..-....+.+|++|.......+.........+.+.+++.+
T Consensus 78 ----~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 78 ----EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred ----HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 1345678999999999874332 233 3333212456778888876555445555555567888999999
Q ss_pred HHHHHHHHHH
Q 003873 537 EIAKRLMQIA 546 (790)
Q Consensus 537 ei~~iL~~I~ 546 (790)
++..++....
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 244
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.47 E-value=1.8e-07 Score=94.10 Aligned_cols=100 Identities=23% Similarity=0.288 Sum_probs=58.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK 473 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~ 473 (790)
..+++|+||+|+|||++|.++++++ |+.+..++.++.-. .+....... ...+++... ...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~----~l~~~~~~~---~~~~~~~~l----------~~~ 109 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLD----ELKQSRSDG---SYEELLKRL----------KRV 109 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHH----HHHCCHCCT---THCHHHHHH----------HTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceec----ccccccccc---chhhhcCcc----------ccc
Confidence 4689999999999999999999877 88888887654211 111111111 111222221 123
Q ss_pred eEEEEecCCCCCc--cchhHHHHHHHHhhcCCCcEEEEecccc
Q 003873 474 TVLIMDEVDGMSA--GDRGGIADLIASIKISKIPIICICNDRY 514 (790)
Q Consensus 474 ~VLIIDEiD~L~~--~~~~~l~~Ll~~i~~s~~pII~I~nd~~ 514 (790)
.+|||||+..... .....+..+++.... +.|+|+++|-..
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~-~~~tIiTSN~~~ 151 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYE-RKPTIITSNLSP 151 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHH-T-EEEEEESS-H
T ss_pred cEecccccceeeecccccccchhhhhHhhc-ccCeEeeCCCch
Confidence 5899999976543 233456667766544 468998988543
No 245
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.46 E-value=2.4e-06 Score=101.19 Aligned_cols=190 Identities=12% Similarity=0.131 Sum_probs=109.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCC--cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhcc-ccCCCCCc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGF--QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN-MDRSKHPK 473 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~--~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~-~~~~~~~~ 473 (790)
..+|||.|+||+|||++|+.|++.++. .++.++.+.... ..+|+. .+...+........ ........
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d-------~L~G~i---dl~~~~~~g~~~~~~G~L~~A~~ 85 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTED-------RLIGGI---DVEESLAGGQRVTQPGLLDEAPR 85 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchh-------hcccch---hhhhhhhcCcccCCCCCeeeCCC
Confidence 578999999999999999999998864 377776422110 011111 11111111110000 00012344
Q ss_pred eEEEEecCCCCCccchhHHHHHHHHhh------------cCCCcEEEEecccc--hhhhhhccccccc-cccC-CCCHHH
Q 003873 474 TVLIMDEVDGMSAGDRGGIADLIASIK------------ISKIPIICICNDRY--SQKLKSLVNYCSD-LRFR-KPRKQE 537 (790)
Q Consensus 474 ~VLIIDEiD~L~~~~~~~l~~Ll~~i~------------~s~~pII~I~nd~~--~~~l~~L~sR~~~-I~F~-~pt~~e 537 (790)
.+||||||+.+....+..|..+++.-. ...+.||+++|... ....+.|+.|+.. +.+. .++..+
T Consensus 86 GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~e 165 (589)
T TIGR02031 86 GVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDL 165 (589)
T ss_pred CcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHH
Confidence 699999999999988888888876321 12234555555322 2333567777554 2332 334444
Q ss_pred HHHHHHHHH-------------------H----HcCCCCCHHHHHHHHHHc---cC-CHHHHHHHHHHHHh-----cCCC
Q 003873 538 IAKRLMQIA-------------------N----AEGLEVNEIALEELADRV---NG-DIRMAINQLQYMSL-----SLSV 585 (790)
Q Consensus 538 i~~iL~~I~-------------------~----~Egi~i~~~~l~~Ia~~s---~G-DiR~aIn~Lq~~~~-----~~~~ 585 (790)
...++.+.. . ...+.++++++++|++.+ +- .+|..|.+++.+.. +...
T Consensus 166 r~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~ 245 (589)
T TIGR02031 166 RVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTE 245 (589)
T ss_pred HHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCC
Confidence 344443321 0 124678999988888765 22 37887777754432 3678
Q ss_pred CCHHHHHHHHH
Q 003873 586 IKYDDIRQRLL 596 (790)
Q Consensus 586 it~~~v~~~~~ 596 (790)
|+.++++.++.
T Consensus 246 V~~~Dv~~a~~ 256 (589)
T TIGR02031 246 VTEEDLKLAVE 256 (589)
T ss_pred CCHHHHHHHHH
Confidence 99999987653
No 246
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.7e-07 Score=102.09 Aligned_cols=178 Identities=19% Similarity=0.303 Sum_probs=97.6
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCc-EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCc
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQ-AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK 473 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~-iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~ 473 (790)
..-+.+|||||||||||.+||-+.+.|+.. .--+|... .+.+++|.+. ..++.+|..+............-
T Consensus 254 ~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe-------IL~KYVGeSE-~NvR~LFaDAEeE~r~~g~~SgL 325 (744)
T KOG0741|consen 254 KHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE-------ILNKYVGESE-ENVRKLFADAEEEQRRLGANSGL 325 (744)
T ss_pred cceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH-------HHHHhhcccH-HHHHHHHHhHHHHHHhhCccCCc
Confidence 467899999999999999999999998753 22244332 3455566554 45888888775432222223456
Q ss_pred eEEEEecCCCCCcc-----c-----hhHHHHHHHHhh---c-CCCcEEEEecccchhhhh-hccc--ccc-ccccCCCCH
Q 003873 474 TVLIMDEVDGMSAG-----D-----RGGIADLIASIK---I-SKIPIICICNDRYSQKLK-SLVN--YCS-DLRFRKPRK 535 (790)
Q Consensus 474 ~VLIIDEiD~L~~~-----~-----~~~l~~Ll~~i~---~-s~~pII~I~nd~~~~~l~-~L~s--R~~-~I~F~~pt~ 535 (790)
+|||+||+|.+... . -..+..|+..+. . .++-||.++| ....++ .|++ |.. .+.+.-|+.
T Consensus 326 HIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTN--R~DlIDEALLRPGRlEVqmEIsLPDE 403 (744)
T KOG0741|consen 326 HIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTN--RKDLIDEALLRPGRLEVQMEISLPDE 403 (744)
T ss_pred eEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccC--chhhHHHHhcCCCceEEEEEEeCCCc
Confidence 89999999988641 1 123455554332 2 2334555566 344443 3332 222 244555665
Q ss_pred HHHHHHHHH---HHHHcCCCCCHHHHHHHHHHc----cCCHHHHHHHHHHHHhc
Q 003873 536 QEIAKRLMQ---IANAEGLEVNEIALEELADRV----NGDIRMAINQLQYMSLS 582 (790)
Q Consensus 536 ~ei~~iL~~---I~~~Egi~i~~~~l~~Ia~~s----~GDiR~aIn~Lq~~~~~ 582 (790)
.-..++|+- ..+..++--++-.+++|+..+ +..+.-++...|..++.
T Consensus 404 ~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~n 457 (744)
T KOG0741|consen 404 KGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMN 457 (744)
T ss_pred cCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 544444432 222222211222355666554 23444455555555443
No 247
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=98.43 E-value=1.2e-06 Score=74.08 Aligned_cols=76 Identities=38% Similarity=0.569 Sum_probs=67.5
Q ss_pred CCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccc-cccEEEecCCCCcch-HHHHHHhCCceeCHHHHHHHHhh
Q 003873 204 CLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSK-KTNYLLCDEDIAGAK-STKAKELGTPFLTEDGLFDMIRA 279 (790)
Q Consensus 204 ~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~-kt~~lv~G~~~g~~K-~~kA~~~~i~ii~e~~f~~~l~~ 279 (790)
.|.|.+|+|+|.+...+|+++++++..+||.+...++. .++++|++......+ +..|...+++|++++-+++.+..
T Consensus 2 ~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~~ 79 (80)
T smart00292 2 LFKGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDCLKA 79 (80)
T ss_pred ccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHHHHC
Confidence 58999999999888899999999999999999999999 999999987555443 68888899999999999988754
No 248
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.43 E-value=2.7e-06 Score=97.97 Aligned_cols=212 Identities=14% Similarity=0.224 Sum_probs=129.0
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
..++|......++...+..-. .....++|+|.+||||+++|+++.... +..++.+||..
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a------------------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~ 195 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS------------------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAA 195 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh------------------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCC
Confidence 357777666666666555410 124679999999999999999998765 45788999876
Q ss_pred CCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh----------cC
Q 003873 433 SRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK----------IS 502 (790)
Q Consensus 433 ~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~----------~s 502 (790)
.... .++..+.+.....+...... ... .........||||||+.|+...+..+..+++.-. ..
T Consensus 196 ~~~~---~~~~~lfg~~~~~~~~~~~~---~~g-~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~ 268 (463)
T TIGR01818 196 IPKD---LIESELFGHEKGAFTGANTR---RQG-RFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKV 268 (463)
T ss_pred CCHH---HHHHHhcCCCCCCCCCcccC---CCC-cEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeee
Confidence 5221 12211111000000000000 000 0012234679999999999988887777776321 12
Q ss_pred CCcEEEEecccchhhh------hhcccccc--ccccCCCC--HHHHHHHHHHH----HHHcC---CCCCHHHHHHHHHHc
Q 003873 503 KIPIICICNDRYSQKL------KSLVNYCS--DLRFRKPR--KQEIAKRLMQI----ANAEG---LEVNEIALEELADRV 565 (790)
Q Consensus 503 ~~pII~I~nd~~~~~l------~~L~sR~~--~I~F~~pt--~~ei~~iL~~I----~~~Eg---i~i~~~~l~~Ia~~s 565 (790)
.+.||++++......+ +.|..|.. .|.++|+. .+++..++... +...+ ..++++++..|..+.
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 348 (463)
T TIGR01818 269 DVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLR 348 (463)
T ss_pred eeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 4467777765443322 24555543 56667766 55666555443 33333 358999999999876
Q ss_pred -cCCHHHHHHHHHHHHhc--CCCCCHHHHH
Q 003873 566 -NGDIRMAINQLQYMSLS--LSVIKYDDIR 592 (790)
Q Consensus 566 -~GDiR~aIn~Lq~~~~~--~~~it~~~v~ 592 (790)
.||+|++-|.++.++.. +..|+.+++.
T Consensus 349 wpgNvreL~~~~~~~~~~~~~~~i~~~~l~ 378 (463)
T TIGR01818 349 WPGNVRQLENLCRWLTVMASGDEVLVSDLP 378 (463)
T ss_pred CCChHHHHHHHHHHHHHhCCCCcccHHhch
Confidence 89999999999887764 2345555543
No 249
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.42 E-value=3.3e-07 Score=91.33 Aligned_cols=128 Identities=16% Similarity=0.245 Sum_probs=79.2
Q ss_pred ccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCC
Q 003873 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSR 434 (790)
Q Consensus 358 LvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~r 434 (790)
|||+...++++.+-++..- ....+|||+|++||||+.+|+++.+.. +.+++.+||+...
T Consensus 1 liG~s~~m~~~~~~~~~~a------------------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~ 62 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA------------------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALP 62 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT------------------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-
T ss_pred CEeCCHHHHHHHHHHHHHh------------------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhh
Confidence 5787778888877777621 235789999999999999999999865 4679999998653
Q ss_pred CchhhhhhcccCCCc-------hhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh-------
Q 003873 435 GKADAKISKGIGGSN-------ANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK------- 500 (790)
Q Consensus 435 sk~~~~i~~~~g~s~-------~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~------- 500 (790)
.. .++..+.+.. ...-..++.. .....||||||+.|+...|..|..+++.-.
T Consensus 63 ~~---~~e~~LFG~~~~~~~~~~~~~~G~l~~-----------A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~ 128 (168)
T PF00158_consen 63 EE---LLESELFGHEKGAFTGARSDKKGLLEQ-----------ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSD 128 (168)
T ss_dssp HH---HHHHHHHEBCSSSSTTTSSEBEHHHHH-----------TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSS
T ss_pred cc---hhhhhhhccccccccccccccCCceee-----------ccceEEeecchhhhHHHHHHHHHHHHhhchhcccccc
Confidence 21 1221110000 0001123333 234589999999999999998888887432
Q ss_pred ---cCCCcEEEEecccchhh
Q 003873 501 ---ISKIPIICICNDRYSQK 517 (790)
Q Consensus 501 ---~s~~pII~I~nd~~~~~ 517 (790)
..++.||++++......
T Consensus 129 ~~~~~~~RiI~st~~~l~~~ 148 (168)
T PF00158_consen 129 KPVPVDVRIIASTSKDLEEL 148 (168)
T ss_dssp SEEE--EEEEEEESS-HHHH
T ss_pred ccccccceEEeecCcCHHHH
Confidence 23566888877554443
No 250
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.42 E-value=5.2e-06 Score=96.90 Aligned_cols=168 Identities=16% Similarity=0.187 Sum_probs=91.2
Q ss_pred cccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeC--CCCC
Q 003873 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA--SDSR 434 (790)
Q Consensus 357 dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEina--Sd~r 434 (790)
+|.|++.+...|.-.|-. |..........-...-++||+|+||+|||++|+.+++...... .... ++..
T Consensus 204 ~i~G~~~~k~~l~l~l~g--------g~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~-~~~~~~~~~~ 274 (509)
T smart00350 204 SIYGHEDIKKAILLLLFG--------GVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAV-YTTGKGSSAV 274 (509)
T ss_pred cccCcHHHHHHHHHHHhC--------CCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcce-EcCCCCCCcC
Confidence 589999876666544433 1100000000011234899999999999999999999875332 1111 1110
Q ss_pred CchhhhhhcccCCCchhHHHHHHHHh-hhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh------------c
Q 003873 435 GKADAKISKGIGGSNANSIKELVSNE-ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK------------I 501 (790)
Q Consensus 435 sk~~~~i~~~~g~s~~~~i~e~l~~a-~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~------------~ 501 (790)
+-.... +++..... ..... ........+++|||++.|....+..++++++.-. .
T Consensus 275 ~l~~~~------------~~~~~~g~~~~~~G-~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~ 341 (509)
T smart00350 275 GLTAAV------------TRDPETREFTLEGG-ALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLN 341 (509)
T ss_pred Cccccc------------eEccCcceEEecCc-cEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEec
Confidence 000000 00000000 00000 0012345699999999999998998888886421 2
Q ss_pred CCCcEEEEecccch------------hhhhhccccccc--cccCCCCHHHHHHHHHHHH
Q 003873 502 SKIPIICICNDRYS------------QKLKSLVNYCSD--LRFRKPRKQEIAKRLMQIA 546 (790)
Q Consensus 502 s~~pII~I~nd~~~------------~~l~~L~sR~~~--I~F~~pt~~ei~~iL~~I~ 546 (790)
.++.||+++|.... ..-+++++|+.. +.+..++.+.-..++.+++
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence 45568888885322 233678888833 3345566665555555544
No 251
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.42 E-value=2.6e-06 Score=97.95 Aligned_cols=212 Identities=16% Similarity=0.191 Sum_probs=124.0
Q ss_pred CccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCC
Q 003873 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNAS 431 (790)
Q Consensus 355 l~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaS 431 (790)
+..++|+......+...+..+- .....+||+|++|+||+++|+++.... +.+++.+||.
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a------------------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~ 203 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIA------------------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCA 203 (457)
T ss_pred ccceecccHHHhHHHHHHHHHc------------------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECC
Confidence 3457887777777666666532 134689999999999999999998764 4678999998
Q ss_pred CCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh----------c
Q 003873 432 DSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK----------I 501 (790)
Q Consensus 432 d~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~----------~ 501 (790)
..... .++..+.+.....+ ..+..............+||||||+.|....+..+..+++.-. .
T Consensus 204 ~~~~~---~~~~~lfg~~~~~~----~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~ 276 (457)
T PRK11361 204 ALPES---LLESELFGHEKGAF----TGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred CCCHH---HHHHHhcCCCCCCC----CCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 65321 11211111000000 0000000000012234689999999999988887777776422 1
Q ss_pred CCCcEEEEecccchhhh------hhccccccc--cccCCCC--HHHHHH----HHHHHHHHcC---CCCCHHHHHHHHHH
Q 003873 502 SKIPIICICNDRYSQKL------KSLVNYCSD--LRFRKPR--KQEIAK----RLMQIANAEG---LEVNEIALEELADR 564 (790)
Q Consensus 502 s~~pII~I~nd~~~~~l------~~L~sR~~~--I~F~~pt--~~ei~~----iL~~I~~~Eg---i~i~~~~l~~Ia~~ 564 (790)
..+.||++++....... +.|..|+.. |.++|+. .+++.. +|...+...+ ..+++++++.|...
T Consensus 277 ~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 356 (457)
T PRK11361 277 VDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAW 356 (457)
T ss_pred eceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcC
Confidence 23567777765433221 234444333 4444443 233333 3333333323 35899999999987
Q ss_pred c-cCCHHHHHHHHHHHHhc--CCCCCHHHH
Q 003873 565 V-NGDIRMAINQLQYMSLS--LSVIKYDDI 591 (790)
Q Consensus 565 s-~GDiR~aIn~Lq~~~~~--~~~it~~~v 591 (790)
. .||+|++-|.|+.++.. +..|+.+++
T Consensus 357 ~wpgNv~eL~~~~~~~~~~~~~~~i~~~~l 386 (457)
T PRK11361 357 SWPGNIRELSNVIERAVVMNSGPIIFSEDL 386 (457)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCCcccHHHC
Confidence 6 89999999999877654 234555544
No 252
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.42 E-value=5.8e-06 Score=86.03 Aligned_cols=182 Identities=15% Similarity=0.149 Sum_probs=112.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCc---EEEEeCCCCCCc-hhhhhhcccCCCchhHHHHHHHHhhhhcc-ccCCCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQ---AIEVNASDSRGK-ADAKISKGIGGSNANSIKELVSNEALSAN-MDRSKH 471 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~---iiEinaSd~rsk-~~~~i~~~~g~s~~~~i~e~l~~a~~~~~-~~~~~~ 471 (790)
...+.++|+-|+|||++++++...++-+ ++.+........ ....+...+.......+...+........ ......
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~ 130 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGK 130 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCC
Confidence 3589999999999999999777777422 233333221110 11111111222111112211111100000 000122
Q ss_pred CceEEEEecCCCCCccchhHHHHHHHHhhcCCCc--EEEEecccchh-----hhhhccccccc-cccCCCCHHHHHHHHH
Q 003873 472 PKTVLIMDEVDGMSAGDRGGIADLIASIKISKIP--IICICNDRYSQ-----KLKSLVNYCSD-LRFRKPRKQEIAKRLM 543 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~p--II~I~nd~~~~-----~l~~L~sR~~~-I~F~~pt~~ei~~iL~ 543 (790)
.+.++++||++.+....-.++..|.+.......| |++++-..... .++.+..||.. |.+.|++.++...+|.
T Consensus 131 r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~ 210 (269)
T COG3267 131 RPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLR 210 (269)
T ss_pred CCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHH
Confidence 3379999999999988778888777766666666 67776543333 33566788887 9999999999999999
Q ss_pred HHHHHcCCC---CCHHHHHHHHHHccCCHHHHHHHHHHH
Q 003873 544 QIANAEGLE---VNEIALEELADRVNGDIRMAINQLQYM 579 (790)
Q Consensus 544 ~I~~~Egi~---i~~~~l~~Ia~~s~GDiR~aIn~Lq~~ 579 (790)
..+..-+.. ++++++..|...+.|-. .+||++-..
T Consensus 211 ~~Le~a~~~~~l~~~~a~~~i~~~sqg~P-~lin~~~~~ 248 (269)
T COG3267 211 HRLEGAGLPEPLFSDDALLLIHEASQGIP-RLINNLATL 248 (269)
T ss_pred HHHhccCCCcccCChhHHHHHHHHhccch-HHHHHHHHH
Confidence 888765543 67899999999999955 456665433
No 253
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.38 E-value=8.2e-07 Score=94.36 Aligned_cols=102 Identities=23% Similarity=0.292 Sum_probs=65.4
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK 473 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~ 473 (790)
..+++|+||||+|||+||-++++++ |..++.++..+.-. .++..+............-...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~----------------~Lk~~~~~~~~~~~l~~~l~~~ 168 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS----------------KLKAAFDEGRLEEKLLRELKKV 168 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH----------------HHHHHHhcCchHHHHHHHhhcC
Confidence 5799999999999999999999888 78888888765321 1111111100000000001234
Q ss_pred eEEEEecCCCCCcc--chhHHHHHHHHhhcCCCcEEEEecccch
Q 003873 474 TVLIMDEVDGMSAG--DRGGIADLIASIKISKIPIICICNDRYS 515 (790)
Q Consensus 474 ~VLIIDEiD~L~~~--~~~~l~~Ll~~i~~s~~pII~I~nd~~~ 515 (790)
.||||||+-..... .+..+..+|......+.+ |+++|-.+.
T Consensus 169 dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~~~ 211 (254)
T COG1484 169 DLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLSFG 211 (254)
T ss_pred CEEEEecccCccCCHHHHHHHHHHHHHHHhhccc-eeecCCChH
Confidence 69999999886654 345666677766666667 888885443
No 254
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=2.8e-06 Score=85.75 Aligned_cols=118 Identities=12% Similarity=0.112 Sum_probs=93.4
Q ss_pred hhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccc--
Q 003873 450 ANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSD-- 527 (790)
Q Consensus 450 ~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~-- 527 (790)
.+++++++..+.+... ..+ +||+++|.|+..+.+++..+++ +.+...++++++......++++++||..
T Consensus 39 Vd~iReii~~~~~~~~------~~k-~iI~~a~~l~~~A~NaLLK~LE--EPp~~~~fiL~t~~~~~llpTI~SRc~~~~ 109 (206)
T PRK08485 39 IEDAKEVIAEAYIAES------EEK-IIVIAAPSYGIEAQNALLKILE--EPPKNICFIIVAKSKNLLLPTIRSRLIIEK 109 (206)
T ss_pred HHHHHHHHHHHhhCCC------CcE-EEEEchHhhCHHHHHHHHHHhc--CCCCCeEEEEEeCChHhCchHHHhhheecc
Confidence 4678888887655321 223 4688999999988888888887 3444445555555577888999999985
Q ss_pred -----------cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 003873 528 -----------LRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577 (790)
Q Consensus 528 -----------I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq 577 (790)
+.|.+++..++...|.. +.++++...+++++.|+..+.|.+|.++...+
T Consensus 110 ~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~ 169 (206)
T PRK08485 110 RKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNE 169 (206)
T ss_pred ccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccH
Confidence 77899999999999999 78889888999999999999999999876653
No 255
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=98.34 E-value=3e-05 Score=85.29 Aligned_cols=193 Identities=12% Similarity=0.173 Sum_probs=125.4
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh------CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML------GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKH 471 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel------g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~ 471 (790)
+.+||||+----....+..+.+.+ .+++.++++.+. +.+.+++..+...+. -.
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~-----------------~~~~~~~~~~~t~pf----f~ 60 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDA-----------------DQAIQALNEAMTPPF----GS 60 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccc-----------------hHHHHHHHHhcCCCC----CC
Confidence 478999998866666666776554 223333333321 224455554322221 24
Q ss_pred CceEEEEecCCCCCccchhHHHHHHHHhhc--CCCcEEEEecccch---hhhhhccccccccccCCC---CHHHHHHHHH
Q 003873 472 PKTVLIMDEVDGMSAGDRGGIADLIASIKI--SKIPIICICNDRYS---QKLKSLVNYCSDLRFRKP---RKQEIAKRLM 543 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~--s~~pII~I~nd~~~---~~l~~L~sR~~~I~F~~p---t~~ei~~iL~ 543 (790)
.+++|+|++++.+..........|.+.++. ....+|+++.+... .....+...+....|.++ ..+++..++.
T Consensus 61 ~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~ 140 (326)
T PRK07452 61 GGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVE 140 (326)
T ss_pred CceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHH
Confidence 567999999876543233333445554443 23334443333221 122345455666667654 4577999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 544 QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS----LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 544 ~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~----~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
..+.++|+.+++++++.|++.+++|++.+.+.|+-++.. +..|+.++|...+.. . ..+.|+.+..++.
T Consensus 141 ~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~---~-~~~if~l~dai~~ 212 (326)
T PRK07452 141 RTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSN---T-TQNSLQLADALLQ 212 (326)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhcc---C-cCcHHHHHHHHHC
Confidence 999999999999999999999999999999999887764 447999999986642 2 2479998888875
No 256
>PRK09183 transposase/IS protein; Provisional
Probab=98.31 E-value=1.7e-06 Score=92.38 Aligned_cols=100 Identities=21% Similarity=0.179 Sum_probs=58.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK 473 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~ 473 (790)
..+++|+||+|||||+++.+++.++ |+.+..+++.+.... +..... ...+...+... ....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~----l~~a~~---~~~~~~~~~~~---------~~~~ 165 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ----LSTAQR---QGRYKTTLQRG---------VMAP 165 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH----HHHHHH---CCcHHHHHHHH---------hcCC
Confidence 4689999999999999999997664 777777765432110 000000 00111222211 1234
Q ss_pred eEEEEecCCCCCccc--hhHHHHHHHHhhcCCCcEEEEeccc
Q 003873 474 TVLIMDEVDGMSAGD--RGGIADLIASIKISKIPIICICNDR 513 (790)
Q Consensus 474 ~VLIIDEiD~L~~~~--~~~l~~Ll~~i~~s~~pII~I~nd~ 513 (790)
.+|||||++.+.... .+.+..+++.... +.++|+++|-.
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~-~~s~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYE-KGSMILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHh-cCcEEEecCCC
Confidence 699999998765432 2346666665433 34688887743
No 257
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=98.30 E-value=5.2e-05 Score=83.65 Aligned_cols=143 Identities=17% Similarity=0.277 Sum_probs=105.7
Q ss_pred CCceEEEEecCCCCCccc-hhHHHHHHHHhhcCC--CcEEEEecccch---hh---hhhccccccccccCCCCHHHHHHH
Q 003873 471 HPKTVLIMDEVDGMSAGD-RGGIADLIASIKISK--IPIICICNDRYS---QK---LKSLVNYCSDLRFRKPRKQEIAKR 541 (790)
Q Consensus 471 ~~~~VLIIDEiD~L~~~~-~~~l~~Ll~~i~~s~--~pII~I~nd~~~---~~---l~~L~sR~~~I~F~~pt~~ei~~i 541 (790)
+.++||+|++++.+.... ...+..+.+.+.... ..++++.++... .. ...+..++..+.|.+++..++..+
T Consensus 75 ~~~klvii~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~~~~ 154 (340)
T PRK05574 75 SDRKLVELRLPEFLTGAKGEKALKRLEAYLNPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAELPQW 154 (340)
T ss_pred ccCeEEEEECCCCCCchhHHHHHHHHHHhccCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHHHHH
Confidence 456799999999887642 234555555542122 223344433221 12 456667889999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHhccCCCCCChHHHHHHHhcc
Q 003873 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS--LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGF 616 (790)
Q Consensus 542 L~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~--~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~~ 616 (790)
+...|...|+.+++++++.|++.+++|++.+.+.|+-++.. ...||.++|.+.+.. ....++|+.+..++..
T Consensus 155 i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~---~~~~~~f~l~dai~~~ 228 (340)
T PRK05574 155 IQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPD---SARFDVFDLVDAILAG 228 (340)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhh---hhcCCHHHHHHHHHCC
Confidence 99999999999999999999999999999999999877653 234999999887643 2345789998888763
No 258
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.29 E-value=5.3e-07 Score=89.88 Aligned_cols=67 Identities=13% Similarity=0.253 Sum_probs=40.7
Q ss_pred CceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEeccc-chhhhhhcccc--ccccccCCCCHHHHH
Q 003873 472 PKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDR-YSQKLKSLVNY--CSDLRFRKPRKQEIA 539 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~-~~~~l~~L~sR--~~~I~F~~pt~~ei~ 539 (790)
...+||||||-.|--...++...+.+.+. +..|+|.+.-.. ..+.+..+.+| +..+.+.+-+.+.+.
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~-s~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~ 164 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLD-SNKPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDALP 164 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHC-TTSEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCHH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHc-CCCcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhHh
Confidence 34699999999998777777777777666 788888887665 45566777776 555666655554443
No 259
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=98.28 E-value=4e-05 Score=83.03 Aligned_cols=140 Identities=16% Similarity=0.274 Sum_probs=103.6
Q ss_pred CCceEEEEecCCCCCcc-chhHHHHHHHHhhcCCCcEEEEecccch-h----hhhhccccccccccCCCCHHHHHHHHHH
Q 003873 471 HPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYS-Q----KLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544 (790)
Q Consensus 471 ~~~~VLIIDEiD~L~~~-~~~~l~~Ll~~i~~s~~pII~I~nd~~~-~----~l~~L~sR~~~I~F~~pt~~ei~~iL~~ 544 (790)
..++||+|++++.+... ....+..+++.. .....+|++++.... . .+..+ ++|..+.|.+++..++..++..
T Consensus 45 ~~~kliii~~~~~~~~~~~~~~L~~~l~~~-~~~~~~i~~~~~~~~~~~~~k~~~~~-~~~~~i~~~~~~~~~~~~~i~~ 122 (302)
T TIGR01128 45 SERRLVELRNPEGKPGAKGLKALEEYLANP-PPDTLLLIEAPKLDKRKKLTKWLKAL-KNAQIVECKTPKEQELPRWIQA 122 (302)
T ss_pred cCCeEEEEECCCCCCCHHHHHHHHHHHhcC-CCCEEEEEecCCCCHhHHHHHHHHHh-cCeeEEEecCCCHHHHHHHHHH
Confidence 45679999999988642 223444444432 223345555542111 1 12333 5899999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS--LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 545 I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~--~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
.+.++|+.+++++++.|+..++||++.+.+.|+-++.. ...+|.++|...+... ...++|+.+..++.
T Consensus 123 ~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~---~~~~if~l~dal~~ 192 (302)
T TIGR01128 123 RLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDS---ARFNVFDLTDALLE 192 (302)
T ss_pred HHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhh---hcCCHHHHHHHHHC
Confidence 99999999999999999999999999999999877664 4579999998876433 34578988888875
No 260
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.9e-06 Score=93.34 Aligned_cols=79 Identities=20% Similarity=0.357 Sum_probs=57.4
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VL 476 (790)
..++||.||+|+|||.||+.||+-++.++.-.+|..... .-++|.....-|..++..+.+... .....|+
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQ------AGYVGeDVEsvi~KLl~~A~~nVe----kAQqGIV 295 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQ------AGYVGEDVESVIQKLLQEAEYNVE----KAQQGIV 295 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhh------cccccccHHHHHHHHHHHccCCHH----HHhcCeE
Confidence 468999999999999999999999999998888875311 112333223446666666554332 3456799
Q ss_pred EEecCCCCC
Q 003873 477 IMDEVDGMS 485 (790)
Q Consensus 477 IIDEiD~L~ 485 (790)
||||||.|.
T Consensus 296 flDEvDKi~ 304 (564)
T KOG0745|consen 296 FLDEVDKIT 304 (564)
T ss_pred EEehhhhhc
Confidence 999999997
No 261
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.25 E-value=6.6e-06 Score=95.31 Aligned_cols=47 Identities=30% Similarity=0.356 Sum_probs=38.7
Q ss_pred CCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 353 KTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 353 ~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..|+|++|+...++.|...+.. .++++|.||||+||||+++.++..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~----------------------g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAG----------------------GHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccC----------------------CCEEEEEecCCCCHHHHHHHHhccc
Confidence 3899999999987766544432 4789999999999999999999765
No 262
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.25 E-value=1.3e-06 Score=82.41 Aligned_cols=84 Identities=18% Similarity=0.312 Sum_probs=48.8
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhh-----ccccCCCCCc
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS-----ANMDRSKHPK 473 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~-----~~~~~~~~~~ 473 (790)
++||.|+||+|||++|+++|+.+|..+..+..+...-.. +++....+. .......--.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPs-----------------Di~G~~v~~~~~~~f~~~~GPif~ 63 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPS-----------------DILGFPVYDQETGEFEFRPGPIFT 63 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HH-----------------HHHEEEEEETTTTEEEEEE-TT-S
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcc-----------------cceeeeeeccCCCeeEeecChhhh
Confidence 589999999999999999999999999888765322111 111110000 0000011123
Q ss_pred eEEEEecCCCCCccchhHHHHHHHHh
Q 003873 474 TVLIMDEVDGMSAGDRGGIADLIASI 499 (790)
Q Consensus 474 ~VLIIDEiD~L~~~~~~~l~~Ll~~i 499 (790)
.|+++||+.+.....|.+++++++..
T Consensus 64 ~ill~DEiNrappktQsAlLeam~Er 89 (131)
T PF07726_consen 64 NILLADEINRAPPKTQSALLEAMEER 89 (131)
T ss_dssp SEEEEETGGGS-HHHHHHHHHHHHHS
T ss_pred ceeeecccccCCHHHHHHHHHHHHcC
Confidence 59999999999999999999888754
No 263
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.24 E-value=1.5e-06 Score=83.66 Aligned_cols=110 Identities=19% Similarity=0.361 Sum_probs=72.8
Q ss_pred cCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC---cEEEEeCCCCCC
Q 003873 359 VGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF---QAIEVNASDSRG 435 (790)
Q Consensus 359 vG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~---~iiEinaSd~rs 435 (790)
||....+++++.-+...- .....|||+|++|+||+++|+.|....+. .++.+++...
T Consensus 1 vG~S~~~~~l~~~l~~~a------------------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~-- 60 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA------------------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASL-- 60 (138)
T ss_dssp --SCHHHHHHHHHHHHHH------------------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCT--
T ss_pred CCCCHHHHHHHHHHHHHh------------------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhC--
Confidence 456666777776666621 23578999999999999999999987643 1222222211
Q ss_pred chhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccch
Q 003873 436 KADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYS 515 (790)
Q Consensus 436 k~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~ 515 (790)
. .+++..+ ....|||+|+|.|+...+..+..++...+..++.+|++|.....
T Consensus 61 -------------~----~~~l~~a-----------~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~ 112 (138)
T PF14532_consen 61 -------------P----AELLEQA-----------KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLE 112 (138)
T ss_dssp -------------C----HHHHHHC-----------TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CC
T ss_pred -------------c----HHHHHHc-----------CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHH
Confidence 0 2334332 23489999999999988888888888666678899999886554
Q ss_pred h
Q 003873 516 Q 516 (790)
Q Consensus 516 ~ 516 (790)
.
T Consensus 113 ~ 113 (138)
T PF14532_consen 113 E 113 (138)
T ss_dssp C
T ss_pred H
Confidence 4
No 264
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.21 E-value=1.8e-05 Score=90.56 Aligned_cols=189 Identities=13% Similarity=0.161 Sum_probs=108.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHP 472 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~ 472 (790)
....++|+|.+|+||+++|+++.... +.+++.+||+..... .++..+.+.....+ ..+............
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~---~~~~~lfg~~~~~~----~~~~~~~~g~~~~a~ 233 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNES---LLESELFGHEKGAF----TGADKRREGRFVEAD 233 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHH---HHHHHhcCCCCCCc----CCCCcCCCCceeECC
Confidence 35789999999999999999997655 467999999854221 12211111000000 000000000001233
Q ss_pred ceEEEEecCCCCCccchhHHHHHHHHhhc----------CCCcEEEEecccchhhh------hhccccccc--cccCCCC
Q 003873 473 KTVLIMDEVDGMSAGDRGGIADLIASIKI----------SKIPIICICNDRYSQKL------KSLVNYCSD--LRFRKPR 534 (790)
Q Consensus 473 ~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~----------s~~pII~I~nd~~~~~l------~~L~sR~~~--I~F~~pt 534 (790)
..+||||||+.|....+..+..+++.-.. ..+.||++++......+ +.|..++.. |.++|+.
T Consensus 234 ~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLr 313 (441)
T PRK10365 234 GGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLR 313 (441)
T ss_pred CCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChh
Confidence 56899999999999888777776653211 13456766664433222 223334333 4444443
Q ss_pred H--HHHHHHHH----HHHHHcC---CCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhc--CCCCCHHHH
Q 003873 535 K--QEIAKRLM----QIANAEG---LEVNEIALEELADRV-NGDIRMAINQLQYMSLS--LSVIKYDDI 591 (790)
Q Consensus 535 ~--~ei~~iL~----~I~~~Eg---i~i~~~~l~~Ia~~s-~GDiR~aIn~Lq~~~~~--~~~it~~~v 591 (790)
. +++..++. .++...+ ..++++++..|.... .||+|++.|.|+.++.. ...|+.+++
T Consensus 314 eR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~~~i~~~~l 382 (441)
T PRK10365 314 QRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISEREL 382 (441)
T ss_pred hcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCccchHhC
Confidence 2 23433333 3333333 348999999999987 89999999999887653 334554444
No 265
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.21 E-value=5.7e-06 Score=88.84 Aligned_cols=163 Identities=17% Similarity=0.185 Sum_probs=84.0
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC-Cc--EEEEeC
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG-FQ--AIEVNA 430 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg-~~--iiEina 430 (790)
.+.+++..-........+|+.|-. ..+++||+||+|||||++++.+-..+. .. +..++.
T Consensus 8 ~~~~~~VpT~dt~r~~~ll~~l~~------------------~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~ 69 (272)
T PF12775_consen 8 PFNEILVPTVDTVRYSYLLDLLLS------------------NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINF 69 (272)
T ss_dssp -----T---HHHHHHHHHHHHHHH------------------CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES
T ss_pred ccceEEeCcHHHHHHHHHHHHHHH------------------cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeec
Confidence 356777766665666777777543 257999999999999999988776663 22 344555
Q ss_pred CCCCCchhhhhhcccCCCchhHHHHHHHHhhhh---ccccCCCCCceEEEEecCCCCCccchh------HHHHHHHHh--
Q 003873 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALS---ANMDRSKHPKTVLIMDEVDGMSAGDRG------GIADLIASI-- 499 (790)
Q Consensus 431 Sd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~---~~~~~~~~~~~VLIIDEiD~L~~~~~~------~l~~Ll~~i-- 499 (790)
+.... ...+..++...... .......+++.|+||||++.-..+..+ .|+.+++.-
T Consensus 70 s~~Tt--------------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~ 135 (272)
T PF12775_consen 70 SAQTT--------------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGF 135 (272)
T ss_dssp -TTHH--------------HHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEE
T ss_pred cCCCC--------------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCc
Confidence 43211 12222222221100 001111356679999999866543322 233333210
Q ss_pred -h--------cCCCcEEEEecccc--hhhhhhccccccccccCCCCHHHHHHHHHHHHHH
Q 003873 500 -K--------ISKIPIICICNDRY--SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548 (790)
Q Consensus 500 -~--------~s~~pII~I~nd~~--~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~ 548 (790)
. -.++-+|+.++... ...-+.|.+.+..+.+..|+.+.+..+...++..
T Consensus 136 yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 136 YDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE----TCCHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEecCCChHHHHHHHHHHHhh
Confidence 0 12334566666422 2233667788889999999999999888877653
No 266
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.19 E-value=1.6e-05 Score=77.41 Aligned_cols=138 Identities=17% Similarity=0.293 Sum_probs=73.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCC-----Cch---------hhhhhc------ccCC--Cchh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSR-----GKA---------DAKISK------GIGG--SNAN 451 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~r-----sk~---------~~~i~~------~~g~--s~~~ 451 (790)
..-++++|+||+||||++.-++..+ ||.+-=+-+...| ... ...+.. .+|. ....
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~ 84 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVE 84 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHH
Confidence 4678999999999999999999877 3332111111111 000 000000 0111 1123
Q ss_pred HHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEec-ccchhhhhhcccccccccc
Q 003873 452 SIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICN-DRYSQKLKSLVNYCSDLRF 530 (790)
Q Consensus 452 ~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~n-d~~~~~l~~L~sR~~~I~F 530 (790)
.+.+....+...+. ....|||||||.-|--..+ .+.+.++.+-.+..|+|.+.- ...++.+..++.+...+-|
T Consensus 85 ~le~i~~~al~rA~-----~~aDvIIIDEIGpMElks~-~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~ 158 (179)
T COG1618 85 GLEEIAIPALRRAL-----EEADVIIIDEIGPMELKSK-KFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVF 158 (179)
T ss_pred HHHHHhHHHHHHHh-----hcCCEEEEecccchhhccH-HHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEE
Confidence 34433333222111 1236999999998865443 444555555566778887664 2245566777776666554
Q ss_pred -CCCCHHHHHH
Q 003873 531 -RKPRKQEIAK 540 (790)
Q Consensus 531 -~~pt~~ei~~ 540 (790)
.+-+.+.+..
T Consensus 159 lt~~NR~~i~~ 169 (179)
T COG1618 159 LTPENRNRILN 169 (179)
T ss_pred EccchhhHHHH
Confidence 4444443333
No 267
>PRK05629 hypothetical protein; Validated
Probab=98.15 E-value=9.9e-05 Score=81.13 Aligned_cols=192 Identities=12% Similarity=0.124 Sum_probs=125.6
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHh------CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQML------GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDR 468 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkel------g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~ 468 (790)
...+.+||||+----.-.....|.+.+ .++++++++.+.. ..+++..... +.
T Consensus 4 ~l~~vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~------------------~~~l~~~~t~--sl-- 61 (318)
T PRK05629 4 VQPPVHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEVS------------------QGELLDALSP--SL-- 61 (318)
T ss_pred cCCceEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccCC------------------HHHHHHhhCc--Cc--
Confidence 356789999975422222222233222 3566777665431 2233322111 11
Q ss_pred CCCCceEEEEecCCCCCccchhHHHHHHHHhhc--CCCcEEEEeccc--chhhhhhccccccccccCCCCHHHHHHHHHH
Q 003873 469 SKHPKTVLIMDEVDGMSAGDRGGIADLIASIKI--SKIPIICICNDR--YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544 (790)
Q Consensus 469 ~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~--s~~pII~I~nd~--~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~ 544 (790)
-..+++|+++..+..... ....++..+.. ...-+|++++.. .....+.|...+..+.|.++...++...+..
T Consensus 62 -F~~~rlV~v~~~~~~~~~---~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~ 137 (318)
T PRK05629 62 -FGEDRVIVLTNMEQAGKE---PTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQ 137 (318)
T ss_pred -cCCceEEEEeChHhcChh---HHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHH
Confidence 245679999988764332 22334444332 222344455421 1111245666778899999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS-LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 545 I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~-~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
.+.+.|+.+++++++.|++.+++|+..+-+.|+-++.. ++.||.++|.+.+.. ....++|+.+..++.
T Consensus 138 ~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~---~~~~~iF~l~dAv~~ 206 (318)
T PRK05629 138 EFKNHGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVG---VAEVSGFDIADLACA 206 (318)
T ss_pred HHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCC---CccchHHHHHHHHHc
Confidence 99999999999999999999999999999999877654 567999999886543 345689999999975
No 268
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.13 E-value=1.8e-06 Score=86.07 Aligned_cols=60 Identities=25% Similarity=0.434 Sum_probs=37.7
Q ss_pred cccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC---cEEEEeCCCC
Q 003873 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF---QAIEVNASDS 433 (790)
Q Consensus 357 dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~---~iiEinaSd~ 433 (790)
+++|.++.+++|..+|... ....++.++|+|++|+|||++++.+...+.- -++.+++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~-----------------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA-----------------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT-----------------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHH-----------------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4789999999998888531 1134689999999999999999988776632 2677666544
No 269
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.11 E-value=0.00011 Score=77.07 Aligned_cols=130 Identities=25% Similarity=0.299 Sum_probs=80.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VL 476 (790)
.....++||+|+|||.+++.+|+.+|..++.+|+++.-+. ..+..++...... ..-+
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~--------------~~l~ril~G~~~~---------GaW~ 88 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY--------------QSLSRILKGLAQS---------GAWL 88 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H--------------HHHHHHHHHHHHH---------T-EE
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH--------------HHHHHHHHHHhhc---------Cchh
Confidence 3566789999999999999999999999999999975332 3455566554321 2478
Q ss_pred EEecCCCCCccchhHHHHHHHHh----hc---------------CCCcEEEEecccc---hhhhhhccccccccccCCCC
Q 003873 477 IMDEVDGMSAGDRGGIADLIASI----KI---------------SKIPIICICNDRY---SQKLKSLVNYCSDLRFRKPR 534 (790)
Q Consensus 477 IIDEiD~L~~~~~~~l~~Ll~~i----~~---------------s~~pII~I~nd~~---~~~l~~L~sR~~~I~F~~pt 534 (790)
++||++.|..+.-..+...+..+ .. ..+.|+++.|..+ ......|+.-+..+.+..|+
T Consensus 89 cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD 168 (231)
T PF12774_consen 89 CFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVPD 168 (231)
T ss_dssp EEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCCC
Confidence 99999999876555444444333 11 2234666666544 23335566777778888888
Q ss_pred HHHHHHHHHHHHHHcCCC
Q 003873 535 KQEIAKRLMQIANAEGLE 552 (790)
Q Consensus 535 ~~ei~~iL~~I~~~Egi~ 552 (790)
...|.+++. ...|+.
T Consensus 169 ~~~I~ei~L---~s~GF~ 183 (231)
T PF12774_consen 169 LSLIAEILL---LSQGFK 183 (231)
T ss_dssp HHHHHHHHH---HCCCTS
T ss_pred HHHHHHHHH---HHcCch
Confidence 877776654 345654
No 270
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=98.04 E-value=0.00016 Score=80.17 Aligned_cols=193 Identities=16% Similarity=0.165 Sum_probs=124.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC------CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG------FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRS 469 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg------~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~ 469 (790)
..+.+||||+-.--....+..+.+.+. ++++.++..+.. ..+.+++..+...+.
T Consensus 19 ~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~----------------~~~~~~~~~~~t~sl---- 78 (343)
T PRK06585 19 KIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLD----------------ADPARLEDEANAISL---- 78 (343)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhh----------------cCHHHHHHHHhCCCC----
Confidence 468999999998777777777776652 333444332210 013344444332221
Q ss_pred CCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEeccc-chhhhhhcc---ccccccccCCCCHHHHHHHHHHH
Q 003873 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDR-YSQKLKSLV---NYCSDLRFRKPRKQEIAKRLMQI 545 (790)
Q Consensus 470 ~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~-~~~~l~~L~---sR~~~I~F~~pt~~ei~~iL~~I 545 (790)
-..+++|++.+.+. .....+..++... .....+|+.+... ...++..+. .....+.|.+++..++..+|...
T Consensus 79 F~~~rlViv~~~~~---~~~~~L~~~l~~~-~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~ 154 (343)
T PRK06585 79 FGGRRLIWVRAGSK---NLAAALKALLESP-PGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDE 154 (343)
T ss_pred CCCceEEEEECCch---hHHHHHHHHHcCC-CCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHH
Confidence 24457899995432 1222333344322 2233344433221 112222222 23456788899999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS---LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 546 ~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~---~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
|...|+.+++++++.|++.++||++.+.+.|+-++.. ...||.++|.+.+.. ....++|+.+..++.
T Consensus 155 ~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~---~~e~~if~l~dai~~ 224 (343)
T PRK06585 155 LAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGD---ASALSLDDAADAALA 224 (343)
T ss_pred HHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC---cccccHHHHHHHHHC
Confidence 9999999999999999999999999999999877764 357999999886543 334578999998875
No 271
>PHA00729 NTP-binding motif containing protein
Probab=98.02 E-value=1.3e-05 Score=83.26 Aligned_cols=120 Identities=15% Similarity=0.102 Sum_probs=66.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCC--CchhHHHHHHHHhhhhccccCCCCCce
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGG--SNANSIKELVSNEALSANMDRSKHPKT 474 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~--s~~~~i~e~l~~a~~~~~~~~~~~~~~ 474 (790)
..+++|+|+||+||||+|.+|++.++..+..+...+. ........ .....+.+.+..+... .....
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~------~~d~~~~~~fid~~~Ll~~L~~a~~~------~~~~d 84 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDD------AWQYVQNSYFFELPDALEKIQDAIDN------DYRIP 84 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhh------HHhcCCcEEEEEHHHHHHHHHHHHhc------CCCCC
Confidence 3589999999999999999999998744433321110 00000000 0012222333222110 11235
Q ss_pred EEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHH
Q 003873 475 VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544 (790)
Q Consensus 475 VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~ 544 (790)
+|||||+..-...- .+.. . . + ..+....+.+++||..+.|.+++++++..+|..
T Consensus 85 lLIIDd~G~~~~~~--~wh~------~-~----~---~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 85 LIIFDDAGIWLSKY--VWYE------D-Y----M---KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred EEEEeCCchhhccc--chhh------h-c----c---chHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 89999964222110 0000 0 0 0 113344567788999999999999999888775
No 272
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.01 E-value=1.9e-05 Score=80.71 Aligned_cols=111 Identities=23% Similarity=0.342 Sum_probs=60.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccc-cCCCCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANM-DRSKHP 472 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~-~~~~~~ 472 (790)
.+.++|.||||||||++++.+.+.+ |+.++-+-++.. ....+....+ .....+..++......... ......
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~---Aa~~L~~~~~-~~a~Ti~~~l~~~~~~~~~~~~~~~~ 93 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNK---AAKELREKTG-IEAQTIHSFLYRIPNGDDEGRPELPK 93 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHH---HHHHHHHHHT-S-EEEHHHHTTEECCEECCSSCC-TS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHH---HHHHHHHhhC-cchhhHHHHHhcCCcccccccccCCc
Confidence 4689999999999999999987655 677777655421 1111221111 1112233333332111100 000234
Q ss_pred ceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccc
Q 003873 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY 514 (790)
Q Consensus 473 ~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~ 514 (790)
..+|||||+..+.. ..+..|+..+......+||+.....
T Consensus 94 ~~vliVDEasmv~~---~~~~~ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 94 KDVLIVDEASMVDS---RQLARLLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp TSEEEESSGGG-BH---HHHHHHHHHS-T-T-EEEEEE-TTS
T ss_pred ccEEEEecccccCH---HHHHHHHHHHHhcCCEEEEECCcch
Confidence 57999999998865 3466777777777888999987543
No 273
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.98 E-value=5.2e-05 Score=73.33 Aligned_cols=110 Identities=15% Similarity=0.235 Sum_probs=62.0
Q ss_pred EEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhh--------hh-c--cc-CCCchhHHHHHHHHhhhhc
Q 003873 400 AILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAK--------IS-K--GI-GGSNANSIKELVSNEALSA 464 (790)
Q Consensus 400 lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~--------i~-~--~~-g~s~~~~i~e~l~~a~~~~ 464 (790)
++|+||||+|||+++..++..+ +..++.++........... .. . .+ ..................
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 80 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL- 80 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH-
Confidence 7899999999999999998877 5677777665432211000 00 0 00 000000111110000000
Q ss_pred cccCCCCCceEEEEecCCCCCcc-----------chhHHHHHHHHhhcCCCcEEEEeccc
Q 003873 465 NMDRSKHPKTVLIMDEVDGMSAG-----------DRGGIADLIASIKISKIPIICICNDR 513 (790)
Q Consensus 465 ~~~~~~~~~~VLIIDEiD~L~~~-----------~~~~l~~Ll~~i~~s~~pII~I~nd~ 513 (790)
.......+|||||+..+... ....+..++...+...+++|++++..
T Consensus 81 ---~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 137 (165)
T cd01120 81 ---RERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVP 137 (165)
T ss_pred ---HhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 01345679999999976432 12456666666677789999988754
No 274
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.95 E-value=0.00011 Score=84.95 Aligned_cols=47 Identities=26% Similarity=0.412 Sum_probs=36.8
Q ss_pred CCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 353 KTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 353 ~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.+|.++.|+...++.+.-.+ ...++++|.||+|+|||++++.++..+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa----------------------~~G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA----------------------AGGHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred cCeEEEECcHHHHhhhheec----------------------cCCcEEEEECCCCCcHHHHHHHHhccC
Confidence 37889999987776643211 124799999999999999999999766
No 275
>PRK05907 hypothetical protein; Provisional
Probab=97.93 E-value=0.00067 Score=74.29 Aligned_cols=190 Identities=15% Similarity=0.124 Sum_probs=120.9
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLI 477 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLI 477 (790)
..+||+|.-- ..+.-+.+...++-+..+++..+. .+.+++..+...+. -..+++|+
T Consensus 19 ~~y~~~g~~~--~~~~~~l~~~~~~~~~~~fdg~~~------------------~~~~ii~~aetlPf----FaerRlV~ 74 (311)
T PRK05907 19 PAVIVIGSSS--EEDKDIFIELLVSGRKSEFDGQGL------------------LQQELLSWTEHFGL----FASQETIG 74 (311)
T ss_pred ceEEEecCCc--HHHHHHHHHHhCCCccceecCCCC------------------CHHHHHHHHhcCCc----ccCeEEEE
Confidence 7899999887 333333334433433333333221 24455555543333 23456778
Q ss_pred EecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhh-hhcccccccc----ccCCCCHHHHHHHHHHHHHHcCCC
Q 003873 478 MDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKL-KSLVNYCSDL----RFRKPRKQEIAKRLMQIANAEGLE 552 (790)
Q Consensus 478 IDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l-~~L~sR~~~I----~F~~pt~~ei~~iL~~I~~~Egi~ 552 (790)
+.+.+.+...+...+...++....+.+-||++........+ ..+. ....+ .|.++...++...+...+.++|+.
T Consensus 75 v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~~d~~kkl~K~i~-k~~~v~~~~e~~~l~e~~L~~Wi~~~~~~~g~~ 153 (311)
T PRK05907 75 IYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTKQECFSSLSKKLS-SALCLSLFGEWFADRDKRIAQLLIQRAKELGIS 153 (311)
T ss_pred EecccccccccHHHHHHHHhCCCCCeEEEEEEecccHHHHHHHHHh-hcceeccccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 87766555434444555554332222223233321112222 2232 24444 799999999999999999999999
Q ss_pred CCHHHHHHHHHHc-cCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 553 VNEIALEELADRV-NGDIRMAINQLQYMSLS---LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 553 i~~~~l~~Ia~~s-~GDiR~aIn~Lq~~~~~---~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
+++++++.+++.+ ++|+..+.+.|+-++.. +..||.+++...+.. ...-+.|+.++.++.
T Consensus 154 i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~---s~e~nIF~L~dai~~ 217 (311)
T PRK05907 154 CSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVK---KEAASLWKLRDALLR 217 (311)
T ss_pred cCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcC---cccccHHHHHHHHHc
Confidence 9999999999999 69999999999877664 567999999886543 344478999888874
No 276
>PHA02774 E1; Provisional
Probab=97.93 E-value=4.4e-05 Score=88.31 Aligned_cols=125 Identities=13% Similarity=0.135 Sum_probs=73.5
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEE-EEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAI-EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTV 475 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~ii-EinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~V 475 (790)
.+.++|+||||+|||+++.+|++.++..++ .+|... . +- |.- ....+|
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~----------------Fw--Lqp----------l~d~ki 482 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---H----------------FW--LQP----------LADAKI 482 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---c----------------cc--cch----------hccCCE
Confidence 469999999999999999999999965554 466421 1 00 111 112359
Q ss_pred EEEecCCCCCc-cchhHHHHHHHHh------------hcCCCcEEEEecccc--hhhhhhccccccccccCC--------
Q 003873 476 LIMDEVDGMSA-GDRGGIADLIASI------------KISKIPIICICNDRY--SQKLKSLVNYCSDLRFRK-------- 532 (790)
Q Consensus 476 LIIDEiD~L~~-~~~~~l~~Ll~~i------------~~s~~pII~I~nd~~--~~~l~~L~sR~~~I~F~~-------- 532 (790)
++|||+-.-.. .....+..+++-- .....|+|+++|-.. ......|.+|...+.|+.
T Consensus 483 ~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f~F~n~~P~d~~G 562 (613)
T PHA02774 483 ALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVFEFPNPFPLDENG 562 (613)
T ss_pred EEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEEECCCCCCcCCCC
Confidence 99999922210 0011222222210 012357888888433 334467888887777753
Q ss_pred -----CCHHHHHHHHHHHHHHcCCC
Q 003873 533 -----PRKQEIAKRLMQIANAEGLE 552 (790)
Q Consensus 533 -----pt~~ei~~iL~~I~~~Egi~ 552 (790)
++....+..+.+...+..+.
T Consensus 563 ~P~f~ltd~~WKsFF~rlw~~LdL~ 587 (613)
T PHA02774 563 NPVFELTDANWKSFFERLWSQLDLS 587 (613)
T ss_pred CEeeeeCchhHHHHHHHHHHHcCCC
Confidence 34556667777666555554
No 277
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00025 Score=80.04 Aligned_cols=168 Identities=15% Similarity=0.302 Sum_probs=96.1
Q ss_pred cCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCC-CchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCC
Q 003873 394 ASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR-GKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHP 472 (790)
Q Consensus 394 ~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~r-sk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~ 472 (790)
......+||.||||+|||+||-.+|..-+++++-+-..+.. +-.. ......++..|..+. +..
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sE--------saKc~~i~k~F~DAY--------kS~ 598 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSE--------SAKCAHIKKIFEDAY--------KSP 598 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccH--------HHHHHHHHHHHHHhh--------cCc
Confidence 34567899999999999999999999999999987543221 1100 011245666776654 455
Q ss_pred ceEEEEecCCCCCc----cch--hH-HHHHHHHhh---cCCCcEEEEecccchhhhhhcc-cccc--ccccCCCCH-HHH
Q 003873 473 KTVLIMDEVDGMSA----GDR--GG-IADLIASIK---ISKIPIICICNDRYSQKLKSLV-NYCS--DLRFRKPRK-QEI 538 (790)
Q Consensus 473 ~~VLIIDEiD~L~~----~~~--~~-l~~Ll~~i~---~s~~pII~I~nd~~~~~l~~L~-sR~~--~I~F~~pt~-~ei 538 (790)
-.||++|++++|.. +.+ +. ++.|+=.++ .....++++|+......++..- .-|+ .+..+.++. +++
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~ 678 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQL 678 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHH
Confidence 67999999998864 111 22 233333332 2222344445443333333211 1133 355555554 566
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHccC-----CHHHHHHHHHHHHhc
Q 003873 539 AKRLMQIANAEGLEVNEIALEELADRVNG-----DIRMAINQLQYMSLS 582 (790)
Q Consensus 539 ~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G-----DiR~aIn~Lq~~~~~ 582 (790)
.++|... + .+.++.+..+++.-.+ -|..++.++++....
T Consensus 679 ~~vl~~~----n-~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~q~ 722 (744)
T KOG0741|consen 679 LEVLEEL----N-IFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMARQD 722 (744)
T ss_pred HHHHHHc----c-CCCcchhHHHHHHHhccccchhHHHHHHHHHHHhcc
Confidence 6665532 2 2445555555544322 377777777776544
No 278
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.92 E-value=0.00021 Score=89.08 Aligned_cols=194 Identities=14% Similarity=0.165 Sum_probs=107.4
Q ss_pred hc-CCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 349 KY-RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 349 KY-~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
|+ .|.....+|-.+...+.|... ...+.++|+||+|.||||++..++...+ .+..
T Consensus 6 k~~~p~~~~~~~~R~rl~~~l~~~-----------------------~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w 61 (903)
T PRK04841 6 KLSRPVRLHNTVVRERLLAKLSGA-----------------------NNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGW 61 (903)
T ss_pred ccCCCCCccccCcchHHHHHHhcc-----------------------cCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEE
Confidence 44 355667888777776665321 2357899999999999999999988777 5555
Q ss_pred EeCCCCCCchh---hhhhcccC----C--Cch---------hHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-
Q 003873 428 VNASDSRGKAD---AKISKGIG----G--SNA---------NSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD- 488 (790)
Q Consensus 428 inaSd~rsk~~---~~i~~~~g----~--s~~---------~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~- 488 (790)
++.....+... ..+...++ . ... ..+..++...... .. ....+.+|||||++.+....
T Consensus 62 ~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~-~~~~~~~lvlDD~h~~~~~~~ 138 (903)
T PRK04841 62 YSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIE--LA-DWHQPLYLVIDDYHLITNPEI 138 (903)
T ss_pred EecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHH--Hh-cCCCCEEEEEeCcCcCCChHH
Confidence 54432211110 01111110 0 000 0111111111000 00 12456899999999986432
Q ss_pred hhHHHHHHHHhhcCCCcEEEEecccchhhhhhcc--ccccccccC--CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003873 489 RGGIADLIASIKISKIPIICICNDRYSQKLKSLV--NYCSDLRFR--KPRKQEIAKRLMQIANAEGLEVNEIALEELADR 564 (790)
Q Consensus 489 ~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~--sR~~~I~F~--~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~ 564 (790)
...+..|+... .....+|+++-....--+..+. ..+..+... +++.+++...+... .+..++++.+..|.+.
T Consensus 139 ~~~l~~l~~~~-~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~---~~~~~~~~~~~~l~~~ 214 (903)
T PRK04841 139 HEAMRFFLRHQ-PENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR---LSSPIEAAESSRLCDD 214 (903)
T ss_pred HHHHHHHHHhC-CCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc---cCCCCCHHHHHHHHHH
Confidence 23444555432 2223344443221111122332 223344444 78999998888654 3677899999999999
Q ss_pred ccCCHHHHH
Q 003873 565 VNGDIRMAI 573 (790)
Q Consensus 565 s~GDiR~aI 573 (790)
+.|.+-.+-
T Consensus 215 t~Gwp~~l~ 223 (903)
T PRK04841 215 VEGWATALQ 223 (903)
T ss_pred hCChHHHHH
Confidence 999986543
No 279
>PRK07914 hypothetical protein; Reviewed
Probab=97.91 E-value=0.00041 Score=76.37 Aligned_cols=141 Identities=11% Similarity=0.137 Sum_probs=99.9
Q ss_pred CCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEec-ccchhh-hhhcccc-ccccccCCC-CHHHHHHHHHHHH
Q 003873 471 HPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICN-DRYSQK-LKSLVNY-CSDLRFRKP-RKQEIAKRLMQIA 546 (790)
Q Consensus 471 ~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~n-d~~~~~-l~~L~sR-~~~I~F~~p-t~~ei~~iL~~I~ 546 (790)
..++||++++...+.......+..+++....+ ..+|++++ +....+ ...|... +..+.|.++ ...++...+...+
T Consensus 63 ~~rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~-t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a 141 (320)
T PRK07914 63 AEERVVVLEAAAEAGKDAAALILSAAADLPPG-TVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEF 141 (320)
T ss_pred CCceEEEEeChHhccHHHHHHHHHHHhCCCCC-eEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHH
Confidence 45679999997655432223333333322221 22444433 222222 2455544 347889988 9999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 547 NAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL-SLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 547 ~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~-~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
...|+.+++++++.|++.+++|+..+-+.|+-++. .++.||.++|.+.+. .....++|+.+..++.
T Consensus 142 ~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~---~~~~~~vf~L~dAi~~ 208 (320)
T PRK07914 142 RSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHS---GKAEVKGFDIADKAVA 208 (320)
T ss_pred HHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcC---CCeechHHHHHHHHHC
Confidence 99999999999999999999999999999987765 356799999988653 3445689999999975
No 280
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.90 E-value=0.0004 Score=77.86 Aligned_cols=198 Identities=15% Similarity=0.257 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHH--HHHHHHhCCcEEEEeCCCC---CCc
Q 003873 362 QQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAA--KLVCQMLGFQAIEVNASDS---RGK 436 (790)
Q Consensus 362 e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA--~~lAkelg~~iiEinaSd~---rsk 436 (790)
.+.+++|+.||.. ...-.+++.||.|+||+.++ ++|...-+ ++.++|... |+-
T Consensus 2 ~e~~~~L~~wL~e--------------------~~~TFIvV~GPrGSGK~elV~d~~L~~r~~--vL~IDC~~i~~ar~D 59 (431)
T PF10443_consen 2 KEAIEQLKSWLNE--------------------NPNTFIVVQGPRGSGKRELVMDHVLKDRKN--VLVIDCDQIVKARGD 59 (431)
T ss_pred chHHHHHHHHHhc--------------------CCCeEEEEECCCCCCccHHHHHHHHhCCCC--EEEEEChHhhhccCh
Confidence 4568899999987 23457999999999999999 55554333 666666321 111
Q ss_pred h--------------------------hhhhhcccC------CCchhHHHHHHHHhhhhcc-------------------
Q 003873 437 A--------------------------DAKISKGIG------GSNANSIKELVSNEALSAN------------------- 465 (790)
Q Consensus 437 ~--------------------------~~~i~~~~g------~s~~~~i~e~l~~a~~~~~------------------- 465 (790)
. +..+....| .+...+++.+|........
T Consensus 60 ~~~I~~lA~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~ 139 (431)
T PF10443_consen 60 AAFIKNLASQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEE 139 (431)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCch
Confidence 0 000000011 2334566666654321100
Q ss_pred --ccCCCCCceEEEEecCCCCCccchhHHHHHH-HH----hhcCCCcEEEEecccch-hhh-hhcccc-ccccccCCCCH
Q 003873 466 --MDRSKHPKTVLIMDEVDGMSAGDRGGIADLI-AS----IKISKIPIICICNDRYS-QKL-KSLVNY-CSDLRFRKPRK 535 (790)
Q Consensus 466 --~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll-~~----i~~s~~pII~I~nd~~~-~~l-~~L~sR-~~~I~F~~pt~ 535 (790)
.......+.||+||.+..-... .+.+...+ ++ +...-..|||+|+|... ..| +.|-++ +..|.+...++
T Consensus 140 ~yl~~hPe~~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~ 218 (431)
T PF10443_consen 140 DYLEAHPERRPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASP 218 (431)
T ss_pred hhhhhCCccCCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCH
Confidence 0001123579999999775543 34444333 22 23334468999887543 333 455455 45688999999
Q ss_pred HHHHHHHHHHHHHc-CC-------------------CCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 003873 536 QEIAKRLMQIANAE-GL-------------------EVNEIALEELADRVNGDIRMAINQLQYMSLS 582 (790)
Q Consensus 536 ~ei~~iL~~I~~~E-gi-------------------~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~ 582 (790)
+.-+.++...+..+ .. ......++..++.-+|-+..+-.+.+.+..+
T Consensus 219 ~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 219 ESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred HHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 98888888776543 11 1345567777788888776655455555443
No 281
>PRK04296 thymidine kinase; Provisional
Probab=97.89 E-value=6.9e-05 Score=76.24 Aligned_cols=105 Identities=20% Similarity=0.258 Sum_probs=62.8
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCC-CCCCchhhhhhcccCCCc----hhHHHHHHHHhhhhccccCC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNAS-DSRGKADAKISKGIGGSN----ANSIKELVSNEALSANMDRS 469 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaS-d~rsk~~~~i~~~~g~s~----~~~i~e~l~~a~~~~~~~~~ 469 (790)
...|++||+|+||||++..++..+ |..++.++++ +.+... ..+...++... .....+++..... .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~-~~i~~~lg~~~~~~~~~~~~~~~~~~~~------~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGE-GKVVSRIGLSREAIPVSSDTDIFELIEE------E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccC-CcEecCCCCcccceEeCChHHHHHHHHh------h
Confidence 478999999999999998887665 6666666543 322211 11222222110 1122333332211 1
Q ss_pred CCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 470 ~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
.....+|+|||++.+.. ..+.++++.+....+.||++.-+
T Consensus 76 ~~~~dvviIDEaq~l~~---~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDK---EQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred CCCCCEEEEEccccCCH---HHHHHHHHHHHHcCCeEEEEecC
Confidence 24557999999987743 23566777777788889888654
No 282
>PRK04132 replication factor C small subunit; Provisional
Probab=97.89 E-value=8e-06 Score=99.08 Aligned_cols=51 Identities=33% Similarity=0.754 Sum_probs=44.4
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHH
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTA 413 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTl 413 (790)
..+|++||||++|+||+||+..++.|+.++.. ....+++|+||||+||+.+
T Consensus 6 ~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~--------------------~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 6 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT--------------------GSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred cccHHHhhCCCCHHHhcCcHHHHHHHHHHHHc--------------------CCCCeEEEECCCCCCcccc
Confidence 45999999999999999999999999999987 1234578999999999754
No 283
>PF14516 AAA_35: AAA-like domain
Probab=97.88 E-value=0.0016 Score=72.09 Aligned_cols=184 Identities=18% Similarity=0.206 Sum_probs=105.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCc----hh-------hhhhcccCCC------------ch
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGK----AD-------AKISKGIGGS------------NA 450 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk----~~-------~~i~~~~g~s------------~~ 450 (790)
...+.|.||..+|||++...+.+.+ |+.++.++....... .. ..+...++-. ..
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 5689999999999999998887655 888888887653221 10 1111112111 11
Q ss_pred hHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--hhHHHHHHHHhhc-C-------CCcEEEEecc-cchh--h
Q 003873 451 NSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--RGGIADLIASIKI-S-------KIPIICICND-RYSQ--K 517 (790)
Q Consensus 451 ~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--~~~l~~Ll~~i~~-s-------~~pII~I~nd-~~~~--~ 517 (790)
..+..++..... .....+-||+|||||.++... ...+..++..... . +..+|++... .+.. .
T Consensus 111 ~~~~~~~~~~ll-----~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~ 185 (331)
T PF14516_consen 111 ISCTEYFEEYLL-----KQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDI 185 (331)
T ss_pred hhHHHHHHHHHH-----hcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCC
Confidence 122233332211 112467899999999998732 1233344433221 1 1223333321 1111 1
Q ss_pred hhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH
Q 003873 518 LKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDI 591 (790)
Q Consensus 518 l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~it~~~v 591 (790)
-.+-.+.+..+.+...+.+++...+.. .+..+++..++.|...++|-.=-+-.+++.++. ..++.+++
T Consensus 186 ~~SPFNIg~~i~L~~Ft~~ev~~L~~~----~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~--~~~~~~~l 253 (331)
T PF14516_consen 186 NQSPFNIGQPIELPDFTPEEVQELAQR----YGLEFSQEQLEQLMDWTGGHPYLVQKACYLLVE--EQITLEQL 253 (331)
T ss_pred CCCCcccccceeCCCCCHHHHHHHHHh----hhccCCHHHHHHHHHHHCCCHHHHHHHHHHHHH--ccCcHHHH
Confidence 122236677789999999998876654 467788888999999999987544444444443 24444443
No 284
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=6.1e-05 Score=91.14 Aligned_cols=119 Identities=18% Similarity=0.304 Sum_probs=77.6
Q ss_pred cccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCC
Q 003873 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDS 433 (790)
Q Consensus 357 dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~ 433 (790)
.++||.+.+..|...+..-.. |.+.+ ...-.+||.||.|+|||-+|++||..+ .-.+|.++.+.+
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~-----gl~~~-------~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~ 630 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRA-----GLKDP-------NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEF 630 (898)
T ss_pred hccchHHHHHHHHHHHHhhhc-----ccCCC-------CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhh
Confidence 478889999888888887221 21111 234678999999999999999999988 234777777753
Q ss_pred CCchhhhhhc---ccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHh
Q 003873 434 RGKADAKISK---GIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI 499 (790)
Q Consensus 434 rsk~~~~i~~---~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i 499 (790)
.. ....+.. +.|......+.+.+. ..++.||+|||||......++.+..+++.-
T Consensus 631 ~e-vskligsp~gyvG~e~gg~Lteavr-----------rrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 631 QE-VSKLIGSPPGYVGKEEGGQLTEAVK-----------RRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hh-hhhccCCCcccccchhHHHHHHHHh-----------cCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 22 0000110 112122223333332 357789999999999888888888888743
No 285
>PRK13695 putative NTPase; Provisional
Probab=97.82 E-value=0.00019 Score=71.69 Aligned_cols=72 Identities=13% Similarity=0.229 Sum_probs=43.0
Q ss_pred CceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchh-hhhhcccc--ccccccCCCCHHHHHHHHHH
Q 003873 472 PKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQ-KLKSLVNY--CSDLRFRKPRKQEIAKRLMQ 544 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~-~l~~L~sR--~~~I~F~~pt~~ei~~iL~~ 544 (790)
...+|||||+..+...+.. +..++..+-....|+|+++++.... ..+.+..+ +..+.+.+-+.+++...+..
T Consensus 96 ~~~~lllDE~~~~e~~~~~-~~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~ 170 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPK-FVKAVEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILN 170 (174)
T ss_pred CCCEEEEECCCcchhhhHH-HHHHHHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHH
Confidence 5579999998665443433 3333433335678999999975432 34555544 44566666666665554443
No 286
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.78 E-value=0.00027 Score=78.69 Aligned_cols=198 Identities=19% Similarity=0.216 Sum_probs=104.5
Q ss_pred CccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC-CcEEEEeCCCC
Q 003873 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG-FQAIEVNASDS 433 (790)
Q Consensus 355 l~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg-~~iiEinaSd~ 433 (790)
|.-++|++.....|..-.- .+.-..+||.|+.|+||||++|+|+..|. ..++. .|.-.
T Consensus 16 f~aivGqd~lk~aL~l~av--------------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~ 74 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAV--------------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFN 74 (423)
T ss_pred hhhhcCchHHHHHHhhhhc--------------------ccccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCC
Confidence 5678888876655432111 13457899999999999999999999983 22222 22100
Q ss_pred CC------chhhhhhc---------------ccC---CCch------hHHHHHHHHh--hhhccccCCCCCceEEEEecC
Q 003873 434 RG------KADAKISK---------------GIG---GSNA------NSIKELVSNE--ALSANMDRSKHPKTVLIMDEV 481 (790)
Q Consensus 434 rs------k~~~~i~~---------------~~g---~s~~------~~i~e~l~~a--~~~~~~~~~~~~~~VLIIDEi 481 (790)
+. .++.+... .++ +.+. -++...+... .+.+.. .-...+.||+|||+
T Consensus 75 cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGl-La~AnRGIlYvDEv 153 (423)
T COG1239 75 CDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGL-LARANRGILYVDEV 153 (423)
T ss_pred CCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcc-hhhccCCEEEEecc
Confidence 00 00000000 000 0111 1222333321 111111 11345679999999
Q ss_pred CCCCccchhHHHHHHHHh----h--------cCCCcEEEEecccchhhhhhcccccc-ccccCCC-CHHHHHHHHHHHHH
Q 003873 482 DGMSAGDRGGIADLIASI----K--------ISKIPIICICNDRYSQKLKSLVNYCS-DLRFRKP-RKQEIAKRLMQIAN 547 (790)
Q Consensus 482 D~L~~~~~~~l~~Ll~~i----~--------~s~~pII~I~nd~~~~~l~~L~sR~~-~I~F~~p-t~~ei~~iL~~I~~ 547 (790)
..|...-+..|+.++..- + ..+.-+|.+.|..-..+.++|+.|+. .+....+ ..++...++.+.+.
T Consensus 154 nlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 154 NLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred ccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 999887777777777641 1 12223444556554555688998854 4665544 45566666666554
Q ss_pred HcCCCCCHHHHHHHHHHccCCHH-HHHHHHH
Q 003873 548 AEGLEVNEIALEELADRVNGDIR-MAINQLQ 577 (790)
Q Consensus 548 ~Egi~i~~~~l~~Ia~~s~GDiR-~aIn~Lq 577 (790)
-+ ..++..++.++.. .-.+| ++++..+
T Consensus 234 f~--~~Pe~f~~~~~~~-~~~lR~~ii~ar~ 261 (423)
T COG1239 234 FE--AVPEAFLEKYADA-QRALRARIIAARS 261 (423)
T ss_pred hh--cCcHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 42 3444444444443 34677 3444333
No 287
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.77 E-value=9.2e-05 Score=84.73 Aligned_cols=132 Identities=20% Similarity=0.263 Sum_probs=74.6
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCC-CCCchhhhhhcccCCCchhHHHHH-HHHhhhhccccCCCCCceE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD-SRGKADAKISKGIGGSNANSIKEL-VSNEALSANMDRSKHPKTV 475 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd-~rsk~~~~i~~~~g~s~~~~i~e~-l~~a~~~~~~~~~~~~~~V 475 (790)
-++||+|.||||||-..+.+++-..--++..--.. .-+-. ..+.+. . -.+++ |.... .....+.|
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLT-a~v~Kd----P--vtrEWTLEaGA------LVLADkGv 549 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLT-AYVRKD----P--VTREWTLEAGA------LVLADKGV 549 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcceeEeccCCcccccee-EEEeeC----C--ccceeeeccCe------EEEccCce
Confidence 48999999999999999999887644333321100 00000 000000 0 00000 00000 00234568
Q ss_pred EEEecCCCCCccchhHHHHHHHHh------------hcCCCcEEEEecc---cchhh---------hhhccccccccc--
Q 003873 476 LIMDEVDGMSAGDRGGIADLIASI------------KISKIPIICICND---RYSQK---------LKSLVNYCSDLR-- 529 (790)
Q Consensus 476 LIIDEiD~L~~~~~~~l~~Ll~~i------------~~s~~pII~I~nd---~~~~~---------l~~L~sR~~~I~-- 529 (790)
-+|||+|.|...++..+++.++.- -..+|.||..+|. +|... .+++++|+.++.
T Consensus 550 ClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVv 629 (854)
T KOG0477|consen 550 CLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVV 629 (854)
T ss_pred EEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeee
Confidence 899999999999998888877632 1356788888886 45322 268888866543
Q ss_pred ---cCCCCHHHHHHHH
Q 003873 530 ---FRKPRKQEIAKRL 542 (790)
Q Consensus 530 ---F~~pt~~ei~~iL 542 (790)
+.+...+.+.+.+
T Consensus 630 kD~vd~~~De~lA~fV 645 (854)
T KOG0477|consen 630 KDTVDPVQDEKLAKFV 645 (854)
T ss_pred ecccCchhHHHHHHHH
Confidence 3444444444443
No 288
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.76 E-value=9.3e-05 Score=68.10 Aligned_cols=23 Identities=39% Similarity=0.548 Sum_probs=21.0
Q ss_pred EEEECCCCCChHHHHHHHHHHhC
Q 003873 400 AILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 400 lLLsGPpGtGKTTlA~~lAkelg 422 (790)
|.|+||||+|||++|+.||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998875
No 289
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=2.8e-05 Score=87.52 Aligned_cols=48 Identities=27% Similarity=0.363 Sum_probs=41.2
Q ss_pred CCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 352 PKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 352 P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.-+|.|++||+..++.|...... .+++||+||||||||.+|..+..-|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG----------------------gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG----------------------GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc----------------------CCcEEEecCCCCchHHhhhhhcccC
Confidence 34899999999999988766554 5899999999999999999887666
No 290
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.75 E-value=0.00012 Score=88.93 Aligned_cols=173 Identities=14% Similarity=0.143 Sum_probs=93.1
Q ss_pred hhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccC--CCCc------CccCCCcEEEEECCCCCChHHHHHH
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRN--GKKQ------NDASAEKAAILSGSPGMGKTTAAKL 416 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~--~~~~------~~~~~~~~lLLsGPpGtGKTTlA~~ 416 (790)
.+++..+| .|.|++.+++.|.-.|-. ...+.. +... ..-...-+|||.|+||||||++|+.
T Consensus 443 ~L~~SiaP----~I~G~e~vK~ailL~L~g-------G~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~ 511 (915)
T PTZ00111 443 ILLDSFAP----SIKARNNVKIGLLCQLFS-------GNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHY 511 (915)
T ss_pred HHHHHhCC----eEECCHHHHHHHHHHHhc-------CCccccccccccccccccccccCCceEEEeCCCCccHHHHHHH
Confidence 34444555 589999988877544422 111100 0000 0012345899999999999999999
Q ss_pred HHHHhCCc-------EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHh-hhhccccCCCCCceEEEEecCCCCCccc
Q 003873 417 VCQMLGFQ-------AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE-ALSANMDRSKHPKTVLIMDEVDGMSAGD 488 (790)
Q Consensus 417 lAkelg~~-------iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a-~~~~~~~~~~~~~~VLIIDEiD~L~~~~ 488 (790)
+++..... +..+++... ....+..... ..... ........+++|||++.|...+
T Consensus 512 Ih~lspR~~ytsG~~~s~vgLTa~-----------------~~~~d~~tG~~~le~G-aLvlAdgGtL~IDEidkms~~~ 573 (915)
T PTZ00111 512 THLLSPRSIYTSGKSSSSVGLTAS-----------------IKFNESDNGRAMIQPG-AVVLANGGVCCIDELDKCHNES 573 (915)
T ss_pred HHHhCCccccCCCCCCccccccch-----------------hhhcccccCcccccCC-cEEEcCCCeEEecchhhCCHHH
Confidence 99854211 111111100 0000000000 00000 0012334699999999999999
Q ss_pred hhHHHHHHHHhh------------cCCCcEEEEecccc------------hhhhhhcccccccc--ccCCCCHHHHHHHH
Q 003873 489 RGGIADLIASIK------------ISKIPIICICNDRY------------SQKLKSLVNYCSDL--RFRKPRKQEIAKRL 542 (790)
Q Consensus 489 ~~~l~~Ll~~i~------------~s~~pII~I~nd~~------------~~~l~~L~sR~~~I--~F~~pt~~ei~~iL 542 (790)
+..|+++++.-. ..++.||+++|... ..+.++|++|+..| -+..++.+.=..+-
T Consensus 574 Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA 653 (915)
T PTZ00111 574 RLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLIS 653 (915)
T ss_pred HHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHH
Confidence 999998886421 24567888888532 11226788998543 34555554433444
Q ss_pred HHHH
Q 003873 543 MQIA 546 (790)
Q Consensus 543 ~~I~ 546 (790)
.+|+
T Consensus 654 ~hI~ 657 (915)
T PTZ00111 654 LSIA 657 (915)
T ss_pred HHHH
Confidence 4444
No 291
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.74 E-value=0.0012 Score=75.01 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=75.4
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLII 478 (790)
.++|+||.+|||||++..+.+.+.-.++++|-.|.+...... .+.+..+.... ...+..||+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l---------~d~~~~~~~~~---------~~~~~yifL 100 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL---------LDLLRAYIELK---------EREKSYIFL 100 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH---------HHHHHHHHHhh---------ccCCceEEE
Confidence 999999999999999999988875557888877765432100 11122222111 114568999
Q ss_pred ecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccc---hhhhhhccccccccccCCCCHHHHHH
Q 003873 479 DEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY---SQKLKSLVNYCSDLRFRKPRKQEIAK 540 (790)
Q Consensus 479 DEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~---~~~l~~L~sR~~~I~F~~pt~~ei~~ 540 (790)
|||+.+.. -..++..+.+. ...-|+++++... ......|..|...+.+.|++-.+...
T Consensus 101 DEIq~v~~-W~~~lk~l~d~---~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 101 DEIQNVPD-WERALKYLYDR---GNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred ecccCchh-HHHHHHHHHcc---ccceEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 99998864 22233333332 2224666655322 12225688899999999999888865
No 292
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.70 E-value=0.00051 Score=81.19 Aligned_cols=190 Identities=10% Similarity=0.068 Sum_probs=114.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCC--cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhc-cccCCCCCc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGF--QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA-NMDRSKHPK 473 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~--~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~-~~~~~~~~~ 473 (790)
...|||.|++|++|||+++.++..+.- .++.+..+-+. ...+|+ -++...+....... ........+
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~-------~~L~Gg---~Dl~~~l~~g~~~~~pGlla~Ah~ 94 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIAD-------DRLLGG---LDLAATLRAGRPVAQRGLLAEADG 94 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcH-------HHccCC---chHHhHhhcCCcCCCCCceeeccC
Confidence 468999999999999999999998853 56665433221 112222 12344443322110 011123445
Q ss_pred eEEEEecCCCCCccchhHHHHHHHHhh----------cCCCcEEEEeccc---chhhh-hhcccccc-ccccCCCCHHHH
Q 003873 474 TVLIMDEVDGMSAGDRGGIADLIASIK----------ISKIPIICICNDR---YSQKL-KSLVNYCS-DLRFRKPRKQEI 538 (790)
Q Consensus 474 ~VLIIDEiD~L~~~~~~~l~~Ll~~i~----------~s~~pII~I~nd~---~~~~l-~~L~sR~~-~I~F~~pt~~ei 538 (790)
.||||||+..+.......|.+.++.-. ....++++|+.++ +...+ .+|+.|+. .+.+..++..+.
T Consensus 95 GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~ 174 (584)
T PRK13406 95 GVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDA 174 (584)
T ss_pred CEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHh
Confidence 799999999998877777776665321 1234577777532 33334 45777754 366666554433
Q ss_pred H-------HHHHHHHHHcCCCCCHHHHHHHHHHc---cC-CHHHHHHHHHHHHh-----cCCCCCHHHHHHHHH
Q 003873 539 A-------KRLMQIANAEGLEVNEIALEELADRV---NG-DIRMAINQLQYMSL-----SLSVIKYDDIRQRLL 596 (790)
Q Consensus 539 ~-------~iL~~I~~~Egi~i~~~~l~~Ia~~s---~G-DiR~aIn~Lq~~~~-----~~~~it~~~v~~~~~ 596 (790)
. .++.....-.++.++++.+.+|++.+ +- ..|..+.+|..... +...|+.+++..++.
T Consensus 175 ~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~ 248 (584)
T PRK13406 175 REIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAAR 248 (584)
T ss_pred cccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 2 12211112247889999999888755 22 66888877765432 357899999987653
No 293
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.68 E-value=0.00077 Score=71.87 Aligned_cols=226 Identities=17% Similarity=0.180 Sum_probs=113.2
Q ss_pred ccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCc--EEE-EeCC
Q 003873 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQ--AIE-VNAS 431 (790)
Q Consensus 358 LvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~--iiE-inaS 431 (790)
|.||.-+++.|...|..+-.+ .. ...+-.+=|+|++||||...++.||+.+ |.+ ++. +-+.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n----~~---------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat 150 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWAN----PN---------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVAT 150 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcC----CC---------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhh
Confidence 677776666666666652211 11 1123455588999999999999999887 211 111 0011
Q ss_pred -CCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHh------hcCCC
Q 003873 432 -DSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI------KISKI 504 (790)
Q Consensus 432 -d~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i------~~s~~ 504 (790)
+.-.. ..++.+ ..+++..+..... .-.+.++|+||+|.|..+--..+.-+++.. ...+.
T Consensus 151 ~hFP~~--~~ie~Y-----k~eL~~~v~~~v~-------~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frka 216 (344)
T KOG2170|consen 151 LHFPHA--SKIEDY-----KEELKNRVRGTVQ-------ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKA 216 (344)
T ss_pred ccCCCh--HHHHHH-----HHHHHHHHHHHHH-------hcCCceEEechhhhcCHhHHHHHhhhhccccccccccccce
Confidence 11111 011111 1223322222111 234569999999999986555555555532 23445
Q ss_pred cEEEEecccchhhhhhccc-cccccccCCCCHHHHHHHHHHHHHHc---CC----CCCHHHHHHHHHHccCCHHHHHHHH
Q 003873 505 PIICICNDRYSQKLKSLVN-YCSDLRFRKPRKQEIAKRLMQIANAE---GL----EVNEIALEELADRVNGDIRMAINQL 576 (790)
Q Consensus 505 pII~I~nd~~~~~l~~L~s-R~~~I~F~~pt~~ei~~iL~~I~~~E---gi----~i~~~~l~~Ia~~s~GDiR~aIn~L 576 (790)
.+|++.|-.-..+-+-.+. .-.-.....+.-..+...|+.-+.++ |+ .++...++.++-.-..+=|.+...+
T Consensus 217 IFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~ 296 (344)
T KOG2170|consen 217 IFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCI 296 (344)
T ss_pred EEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHH
Confidence 5777877533222111111 00001122222233333343333322 22 2566777777776677777777777
Q ss_pred HHHHhcCCC-CCHHHHHHHHHhccCCCCCChHHHHHHHhcc
Q 003873 577 QYMSLSLSV-IKYDDIRQRLLSSAKDEDISPFTAVDKLFGF 616 (790)
Q Consensus 577 q~~~~~~~~-it~~~v~~~~~~~~kd~~ls~F~ai~ki~~~ 616 (790)
+..-...+. .+.+-+...+ +.++.|..-+++|..
T Consensus 297 r~el~~rg~~~d~~~~erva------~~l~ffp~~~k~Fs~ 331 (344)
T KOG2170|consen 297 RAELRKRGLAPDQDFVERVA------NSLSFFPESSKLFSS 331 (344)
T ss_pred HHHHHhcccccchHHHHHHH------Hhhcccccccceeec
Confidence 655444333 3333333333 234556566666653
No 294
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.68 E-value=0.00029 Score=87.33 Aligned_cols=172 Identities=19% Similarity=0.240 Sum_probs=109.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHH----HHHHHHhhhhccccCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSI----KELVSNEALSANMDRSKH 471 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i----~e~l~~a~~~~~~~~~~~ 471 (790)
..+.+||-|.||+|||+++.++|+..|-..+.+|.|+...-.+ .+...+.+.....| ..|+.. -+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~D-LfGsd~Pve~~Gef~w~dapfL~a----------mr 1610 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCD-LFGSDLPVEEGGEFRWMDAPFLHA----------MR 1610 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHH-HhCCCCCcccCceeEecccHHHHH----------hh
Confidence 3689999999999999999999999999999999987543221 11111111000111 122222 12
Q ss_pred CceEEEEecCCCCCccchhHHHHHHHHhhcCCCc-------------EEEEecccc-----hhhhhhccccccccccCCC
Q 003873 472 PKTVLIMDEVDGMSAGDRGGIADLIASIKISKIP-------------IICICNDRY-----SQKLKSLVNYCSDLRFRKP 533 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~p-------------II~I~nd~~-----~~~l~~L~sR~~~I~F~~p 533 (790)
...-+++||+...+...-.++...++.-...-+| |+..-|..+ .-+.+++++|+.++.+..+
T Consensus 1611 ~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~l 1690 (4600)
T COG5271 1611 DGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGL 1690 (4600)
T ss_pred cCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEeccc
Confidence 3457999999887776677888888754333333 222333222 1123689999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---------------cC-----CHHHHHHHHHHHHhc
Q 003873 534 RKQEIAKRLMQIANAEGLEVNEIALEELADRV---------------NG-----DIRMAINQLQYMSLS 582 (790)
Q Consensus 534 t~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s---------------~G-----DiR~aIn~Lq~~~~~ 582 (790)
+.++|..++.... -.+.++.+..|+... .| ++|..+..|+.+-..
T Consensus 1691 t~dDi~~Ia~~~y----p~v~~d~~~kiik~ms~lqd~i~k~~~~g~~gsPwefnlrdTLRwl~llNq~ 1755 (4600)
T COG5271 1691 TTDDITHIANKMY----PQVNEDWRLKIIKFMSRLQDNIEKDISFGSFGSPWEFNLRDTLRWLILLNQV 1755 (4600)
T ss_pred ccchHHHHHHhhC----CccChHHHHHHHHHHHHHHHhhhhhhcccCCCCCeEEehHHHHHHHHHhhcc
Confidence 9999887766432 345555555554432 22 678888888776443
No 295
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=97.68 E-value=0.0026 Score=70.36 Aligned_cols=140 Identities=23% Similarity=0.230 Sum_probs=100.4
Q ss_pred CCceEEEEecCCCCCccchhHHHHHHHHhhc-CCCcEEEEecccch--hhhhhccc-c--ccccccCCCCHHHHHHHHHH
Q 003873 471 HPKTVLIMDEVDGMSAGDRGGIADLIASIKI-SKIPIICICNDRYS--QKLKSLVN-Y--CSDLRFRKPRKQEIAKRLMQ 544 (790)
Q Consensus 471 ~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~-s~~pII~I~nd~~~--~~l~~L~s-R--~~~I~F~~pt~~ei~~iL~~ 544 (790)
+.+++|++.+...+.. ..+..|++.++. +...+|+++..... .++..+.. . ...+.|.+++..++..++..
T Consensus 70 ~~~rlViv~~~~~~~~---~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~~ 146 (328)
T PRK08487 70 GGKNLLIIKLDKKIPK---KELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQE 146 (328)
T ss_pred CCceEEEEecccccCH---HHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHHH
Confidence 4557888887654432 233455555432 33345554332221 12222222 2 44688999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhcc
Q 003873 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGF 616 (790)
Q Consensus 545 I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~~ 616 (790)
.+.+.|+.++++++..|+..+++|+..+.+-|+-+++....||.++|...+... ...+.|+.+..++.-
T Consensus 147 ~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v~~~---~e~~vF~l~dai~~g 215 (328)
T PRK08487 147 RAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNEPITLKDIQELVFGL---GSVSFEDFFEKLLNK 215 (328)
T ss_pred HHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHhccc---ccccHHHHHHHHHCC
Confidence 999999999999999999999999999999999888877789999998865433 356789999998753
No 296
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.67 E-value=0.00088 Score=85.91 Aligned_cols=197 Identities=18% Similarity=0.207 Sum_probs=99.8
Q ss_pred CCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcE---EEE
Q 003873 352 PKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA---IEV 428 (790)
Q Consensus 352 P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~i---iEi 428 (790)
+..++++||.+..+++|..||.. +....+.+-|+||+|+||||+|++++..+...+ +.+
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l------------------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv 241 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHL------------------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFI 241 (1153)
T ss_pred CcccccccchHHHHHHHHHHHcc------------------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEe
Confidence 34678999999999999998864 012357899999999999999999988773221 222
Q ss_pred eCCCCCCchhhhhhc-ccCC-C-c----hhHHHHHHHHhhh-----hccccCCCCCceEEEEecCCCCCccchhHHHHHH
Q 003873 429 NASDSRGKADAKISK-GIGG-S-N----ANSIKELVSNEAL-----SANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLI 496 (790)
Q Consensus 429 naSd~rsk~~~~i~~-~~g~-s-~----~~~i~e~l~~a~~-----~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll 496 (790)
+....+.... .... .... . . ...+.+++..... .........++.+||||+++.. ..+..+.
T Consensus 242 ~~~~v~~~~~-~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-----~~l~~L~ 315 (1153)
T PLN03210 242 DRAFISKSME-IYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-----DVLDALA 315 (1153)
T ss_pred eccccccchh-hcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-----HHHHHHH
Confidence 2100000000 0000 0000 0 0 0001111110000 0000011345678999998742 2222222
Q ss_pred HHhh--cCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHccCCHHHH
Q 003873 497 ASIK--ISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVN--EIALEELADRVNGDIRMA 572 (790)
Q Consensus 497 ~~i~--~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~--~~~l~~Ia~~s~GDiR~a 572 (790)
.... .....||+++.+.. .+... .....+.+..++.++-.+++...+.......+ .+....|++.++|-+ -|
T Consensus 316 ~~~~~~~~GsrIIiTTrd~~--vl~~~-~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLP-LA 391 (1153)
T PLN03210 316 GQTQWFGSGSRIIVITKDKH--FLRAH-GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLP-LG 391 (1153)
T ss_pred hhCccCCCCcEEEEEeCcHH--HHHhc-CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCc-HH
Confidence 2211 23445777666432 12111 11235667778888888888777654432211 234566778887754 34
Q ss_pred HHHH
Q 003873 573 INQL 576 (790)
Q Consensus 573 In~L 576 (790)
|..+
T Consensus 392 l~vl 395 (1153)
T PLN03210 392 LNVL 395 (1153)
T ss_pred HHHH
Confidence 4444
No 297
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.66 E-value=0.00063 Score=74.59 Aligned_cols=172 Identities=17% Similarity=0.151 Sum_probs=99.5
Q ss_pred CccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCC
Q 003873 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434 (790)
Q Consensus 355 l~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~r 434 (790)
...+.+.+.+++.|...|-+ ++...+.+++|+|-.|+|||.+++.+.+.++.+.+.+|+-+.-
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~-----------------~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecf 67 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGN-----------------NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECF 67 (438)
T ss_pred ccCccchHHHHHHHHHHhCC-----------------CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhc
Confidence 34677888999999888766 1123567889999999999999999999999998888886543
Q ss_pred Cchh--hhhhcccC------CCc---hhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh---
Q 003873 435 GKAD--AKISKGIG------GSN---ANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK--- 500 (790)
Q Consensus 435 sk~~--~~i~~~~g------~s~---~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~--- 500 (790)
+... ..|...++ ... ...+.+++..-....... ......+||+|.+|.+..-+..-+..+++..+
T Consensus 68 t~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t-~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~ 146 (438)
T KOG2543|consen 68 TYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAAT-NRDQKVFLILDNADALRDMDAILLQCLFRLYELLN 146 (438)
T ss_pred cHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhh-ccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC
Confidence 3211 11111110 000 122333333221111111 12346789999999998655544555554433
Q ss_pred cCCCcEEEEecccchhhhh-hccccccccccCCCCHHHHHHHHHH
Q 003873 501 ISKIPIICICNDRYSQKLK-SLVNYCSDLRFRKPRKQEIAKRLMQ 544 (790)
Q Consensus 501 ~s~~pII~I~nd~~~~~l~-~L~sR~~~I~F~~pt~~ei~~iL~~ 544 (790)
...+.||++...-...-+. .=..-...+.|+.++.+++..++.+
T Consensus 147 ~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 147 EPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred CCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 3333344433211010000 0001133588999999999988875
No 298
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.0007 Score=76.16 Aligned_cols=94 Identities=18% Similarity=0.281 Sum_probs=54.2
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh-------CCcEEEEeCCCCCCchhhhhhcc---cCCC-----chhHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML-------GFQAIEVNASDSRGKADAKISKG---IGGS-----NANSIKELVSNE 460 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel-------g~~iiEinaSd~rsk~~~~i~~~---~g~s-----~~~~i~e~l~~a 460 (790)
.++.++|+||+|+||||++.-+|..+ |..+.-+++...|......+..+ ++.. ....+...+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~- 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ- 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-
Confidence 35789999999999999999888765 34565565555553322122111 1111 11222222222
Q ss_pred hhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh
Q 003873 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK 500 (790)
Q Consensus 461 ~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~ 500 (790)
.....+||||++..+.. +...+.++...+.
T Consensus 252 ---------~~~~DlVLIDTaGr~~~-~~~~l~el~~~l~ 281 (388)
T PRK12723 252 ---------SKDFDLVLVDTIGKSPK-DFMKLAEMKELLN 281 (388)
T ss_pred ---------hCCCCEEEEcCCCCCcc-CHHHHHHHHHHHH
Confidence 13457999999988864 3333445555444
No 299
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.60 E-value=0.00028 Score=70.68 Aligned_cols=106 Identities=20% Similarity=0.251 Sum_probs=58.2
Q ss_pred EEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCCC--------------------chh----
Q 003873 399 AAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGGS--------------------NAN---- 451 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~s--------------------~~~---- 451 (790)
.+||+||||+|||+++..++.+. |..++++............... +|-. ...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~-~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAES-LGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHH-cCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 37999999999999998776544 6677777654322111000000 0000 000
Q ss_pred --HHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc----cchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 452 --SIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA----GDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 452 --~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~----~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
.+...+..... .....+|||||+..+.. ..+..+..++..+....+++|+++..
T Consensus 80 ~~~~~~~i~~~~~-------~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~ 139 (187)
T cd01124 80 RLELIQRLKDAIE-------EFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred hHHHHHHHHHHHH-------HhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 00111111110 23457999999987654 12344556666666667888888764
No 300
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.58 E-value=6.8e-05 Score=69.78 Aligned_cols=32 Identities=44% Similarity=0.740 Sum_probs=29.0
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEEeC
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEina 430 (790)
.++|+||||+||||+|+.||+.+|+.++.++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 37899999999999999999999999887764
No 301
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.56 E-value=0.0014 Score=71.12 Aligned_cols=196 Identities=14% Similarity=0.162 Sum_probs=117.9
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeC
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNA 430 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEina 430 (790)
-|+.|++.....+.+..--+.. . ..--.+||.|..||||-.+|+++...- ..+++-+||
T Consensus 202 ~F~~~v~~S~~mk~~v~qA~k~-------------A-----mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNC 263 (511)
T COG3283 202 GFEQIVAVSPKMKHVVEQAQKL-------------A-----MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNC 263 (511)
T ss_pred chHHHhhccHHHHHHHHHHHHh-------------h-----ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeec
Confidence 4888888877766654433321 0 123579999999999999999886544 567899998
Q ss_pred CCCCCchhhhhhcccCCCc--hhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh--------
Q 003873 431 SDSRGKADAKISKGIGGSN--ANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK-------- 500 (790)
Q Consensus 431 Sd~rsk~~~~i~~~~g~s~--~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~-------- 500 (790)
...-.. ..+..+.+.. ...-..||.. ....-+|+|||.-|+..-|..+..+++--.
T Consensus 264 A~lPe~---~aEsElFG~apg~~gk~GffE~-----------AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~ 329 (511)
T COG3283 264 ASLPED---AAESELFGHAPGDEGKKGFFEQ-----------ANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDH 329 (511)
T ss_pred CCCchh---HhHHHHhcCCCCCCCccchhhh-----------ccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcc
Confidence 754221 1121111110 1111223333 223468999999999987777777765211
Q ss_pred --cCCCcEEEEecccchhhh------hhccccccccccCCCCHH--------HHHHHHHHHHHHcCCC---CCHHHHHHH
Q 003873 501 --ISKIPIICICNDRYSQKL------KSLVNYCSDLRFRKPRKQ--------EIAKRLMQIANAEGLE---VNEIALEEL 561 (790)
Q Consensus 501 --~s~~pII~I~nd~~~~~l------~~L~sR~~~I~F~~pt~~--------ei~~iL~~I~~~Egi~---i~~~~l~~I 561 (790)
...+.|||.+--+..... ..|..|..++.++-|+-. -..-.+.++|.+.++. ++++.+..|
T Consensus 330 Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L 409 (511)
T COG3283 330 EVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVL 409 (511)
T ss_pred eEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Confidence 224456666543333222 234455444443333211 2234566778777765 678888888
Q ss_pred HHHc-cCCHHHHHHHHHHHHh
Q 003873 562 ADRV-NGDIRMAINQLQYMSL 581 (790)
Q Consensus 562 a~~s-~GDiR~aIn~Lq~~~~ 581 (790)
...- .|++|++-|.|-.++.
T Consensus 410 ~~y~WpGNVRqL~N~iyRA~s 430 (511)
T COG3283 410 TRYAWPGNVRQLKNAIYRALT 430 (511)
T ss_pred HHcCCCccHHHHHHHHHHHHH
Confidence 7754 8999999999966554
No 302
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.54 E-value=0.00098 Score=72.02 Aligned_cols=172 Identities=17% Similarity=0.157 Sum_probs=94.6
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHH-HHHH--HhCCcE--EEEeC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAK-LVCQ--MLGFQA--IEVNA 430 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~-~lAk--elg~~i--iEina 430 (790)
--+.|..+.-.+|..||+.--. .+..+.+++.||.|+|||+++. .++. +.|-++ +.+|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~----------------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng 87 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL----------------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNG 87 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH----------------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECc
Confidence 3488899999999999987211 1346899999999999999874 3333 555444 44554
Q ss_pred CCCCCchh-------hhhh--cc--cCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc-chhHHHHHHHH
Q 003873 431 SDSRGKAD-------AKIS--KG--IGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIAS 498 (790)
Q Consensus 431 Sd~rsk~~-------~~i~--~~--~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~-~~~~l~~Ll~~ 498 (790)
.-...+.. ..++ .. ..++....+..++..-.. .......+.|.|+||+|...+. .|.-+..+++.
T Consensus 88 ~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~---~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDi 164 (408)
T KOG2228|consen 88 ELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKK---GDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDI 164 (408)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhc---CCCCCCceEEEEeehhhccccchhhHHHHHHHHH
Confidence 32111100 0000 00 011222223333322111 1111233456667899988774 44566688888
Q ss_pred hhcCCCcEEEEecccchhhh----hhcccccc---ccccCCCCHHHHHHHHHHHH
Q 003873 499 IKISKIPIICICNDRYSQKL----KSLVNYCS---DLRFRKPRKQEIAKRLMQIA 546 (790)
Q Consensus 499 i~~s~~pII~I~nd~~~~~l----~~L~sR~~---~I~F~~pt~~ei~~iL~~I~ 546 (790)
.+..+.||-+|.-+.....+ +...+|+. ++-++..+-.++..+++..+
T Consensus 165 sqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 165 SQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 88888886554322222222 34445543 34445566777777777654
No 303
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.49 E-value=0.00018 Score=80.22 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=74.6
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchh-------hhhhcccCCCchhHHHHHHHHhhhhcccc
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKAD-------AKISKGIGGSNANSIKELVSNEALSANMD 467 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~-------~~i~~~~g~s~~~~i~e~l~~a~~~~~~~ 467 (790)
..+++++|+||+|+|||.|.-++...+... ...|-... ..+....+ ..+.+..+....
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~------~k~R~HFh~Fm~~vh~~l~~~~~--~~~~l~~va~~l------- 124 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIK------RKRRVHFHEFMLDVHSRLHQLRG--QDDPLPQVADEL------- 124 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcc------ccccccccHHHHHHHHHHHHHhC--CCccHHHHHHHH-------
Confidence 468999999999999999999998887531 11111110 00111010 111222222221
Q ss_pred CCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchh-------------hhhhccccccccccCCC
Q 003873 468 RSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQ-------------KLKSLVNYCSDLRFRKP 533 (790)
Q Consensus 468 ~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~-------------~l~~L~sR~~~I~F~~p 533 (790)
.....||++||++--...+...+..|++.+-...+.+|+++|..... .+..|..+|.++.+...
T Consensus 125 --~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 125 --AKESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred --HhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 12335999999987777777777788888777777788888743322 23445577777777654
No 304
>PTZ00202 tuzin; Provisional
Probab=97.49 E-value=0.0018 Score=72.79 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=53.4
Q ss_pred CCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeC
Q 003873 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430 (790)
Q Consensus 351 ~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEina 430 (790)
.|....+++|.+.....|...|.. .+...++.++|+||+||||||+++.+...++...+..|.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~-----------------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNp 319 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRR-----------------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDV 319 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhc-----------------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECC
Confidence 688899999999999999988875 111235689999999999999999999999877777776
Q ss_pred C
Q 003873 431 S 431 (790)
Q Consensus 431 S 431 (790)
.
T Consensus 320 r 320 (550)
T PTZ00202 320 R 320 (550)
T ss_pred C
Confidence 6
No 305
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.42 E-value=0.00057 Score=81.17 Aligned_cols=151 Identities=19% Similarity=0.256 Sum_probs=82.3
Q ss_pred cccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeC--CCCC
Q 003873 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA--SDSR 434 (790)
Q Consensus 357 dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEina--Sd~r 434 (790)
.|.||+.+.+.|.--|-. |..+.......-..--++||.|.||+|||.+.+.+++.+-..+ +.+. |..-
T Consensus 287 sIyG~e~VKkAilLqLfg--------Gv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~v-ytsgkgss~~ 357 (682)
T COG1241 287 SIYGHEDVKKAILLQLFG--------GVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGV-YTSGKGSSAA 357 (682)
T ss_pred cccCcHHHHHHHHHHhcC--------CCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceE-EEcccccccc
Confidence 588999977776533322 1111000000001235899999999999999999998875332 2221 1110
Q ss_pred CchhhhhhcccCCCchhHH-HHH-HHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHh--h----------
Q 003873 435 GKADAKISKGIGGSNANSI-KEL-VSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI--K---------- 500 (790)
Q Consensus 435 sk~~~~i~~~~g~s~~~~i-~e~-l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i--~---------- 500 (790)
+-....+. +.. -++ +.... .....+.|..|||+|.|...++.++++.++.- .
T Consensus 358 GLTAav~r--------d~~tge~~LeaGA------LVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atL 423 (682)
T COG1241 358 GLTAAVVR--------DKVTGEWVLEAGA------LVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATL 423 (682)
T ss_pred CceeEEEE--------ccCCCeEEEeCCE------EEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeec
Confidence 10000000 000 000 00000 01234569999999999999999999988742 1
Q ss_pred cCCCcEEEEecccch------------hhhhhcccccccccc
Q 003873 501 ISKIPIICICNDRYS------------QKLKSLVNYCSDLRF 530 (790)
Q Consensus 501 ~s~~pII~I~nd~~~------------~~l~~L~sR~~~I~F 530 (790)
.+++-|++.||..+. .+..+|++|+..|.+
T Consensus 424 nARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifv 465 (682)
T COG1241 424 NARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFV 465 (682)
T ss_pred chhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEE
Confidence 244556666775431 112678898765443
No 306
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.37 E-value=0.00076 Score=72.87 Aligned_cols=156 Identities=22% Similarity=0.286 Sum_probs=82.6
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhccc--CCCchhHHHHHHHHhhhhccccCCCCCceEEE
Q 003873 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI--GGSNANSIKELVSNEALSANMDRSKHPKTVLI 477 (790)
Q Consensus 400 lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~--g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLI 477 (790)
++|+||+|+|||++|..||++++..++..+.-. +...+ +.... ...+ .. .-+ --+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~q--------vY~~l~IgTakp-~~~e-~~-----------~v~--hhl 58 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQ--------IYKGMDIGTAKP-SLQE-RE-----------GIP--HHL 58 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhh--------eeeeccccCCCC-CHHH-Hc-----------Ccc--EEE
Confidence 789999999999999999999998876665421 11111 11000 0000 00 111 234
Q ss_pred EecCCCCCc---cc-hhHHHHHHH-HhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCC-
Q 003873 478 MDEVDGMSA---GD-RGGIADLIA-SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGL- 551 (790)
Q Consensus 478 IDEiD~L~~---~~-~~~l~~Ll~-~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi- 551 (790)
||-++--.. .. .+.....++ .....+.|||+=++..|.. +|+. -+...++...+++..+...+...|.
T Consensus 59 id~~~~~~~~~v~~f~~~a~~~i~~~~~~g~~pi~vGGTg~Yi~---all~---g~~~~p~~~~~~r~~l~~~~~~~g~~ 132 (287)
T TIGR00174 59 IDILDPSESYSAADFQTLALNAIADITARGKIPLLVGGTGLYLK---ALLE---GLSPTPSADKLIREQLEILAEEQGWD 132 (287)
T ss_pred EEEechhheEcHHHHHHHHHHHHHHHHhCCCCEEEEcCcHHHHH---HHHc---CCCCCCCCCHHHHHHHHHHHHHcCHH
Confidence 443332111 11 122223333 3345677877766654433 3332 1222334455666666665554442
Q ss_pred -------CCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC
Q 003873 552 -------EVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIK 587 (790)
Q Consensus 552 -------~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~it 587 (790)
.++++... ....+|.|++++.|+.+...+..++
T Consensus 133 ~l~~~L~~~DP~~a~---~i~~nd~~Ri~RALEi~~~tG~~~s 172 (287)
T TIGR00174 133 FLYNELKKVDPVAAA---KIHPNDTRRVQRALEVFYATGKPPS 172 (287)
T ss_pred HHHHHHHhcCHHHHH---hcCCccHHHHHHHHHHHHHHCCChH
Confidence 24443322 2346899999999998776665543
No 307
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.37 E-value=0.011 Score=64.60 Aligned_cols=37 Identities=24% Similarity=0.202 Sum_probs=30.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC------CcEEEEeCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG------FQAIEVNASD 432 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg------~~iiEinaSd 432 (790)
.+..+.|+|+=|+|||++++.+-+++. +.++++|+-.
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~ 61 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWE 61 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEcccc
Confidence 467899999999999999999998884 4477777743
No 308
>PHA02624 large T antigen; Provisional
Probab=97.37 E-value=0.0011 Score=77.41 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=34.5
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG 435 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rs 435 (790)
+..+.+||+||||+||||++.+|++.++..++.+|.+..++
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks 469 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL 469 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh
Confidence 34579999999999999999999999977777788766543
No 309
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.35 E-value=0.00047 Score=75.30 Aligned_cols=160 Identities=21% Similarity=0.225 Sum_probs=87.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCc-hhHHHHHHHHhhhhccccCCCCCceE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSN-ANSIKELVSNEALSANMDRSKHPKTV 475 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~-~~~i~e~l~~a~~~~~~~~~~~~~~V 475 (790)
.+.++|+||+|+|||++|..||++++..++..+.-. +...+.-.+ .....+ ...-.-
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Q--------vy~~l~i~Takp~~~E--------------~~gv~h 61 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQ--------VYRGMDIGTAKPTAEE--------------RAGVPH 61 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccc--------eeecccccCCCCCHHH--------------HcCccE
Confidence 468999999999999999999999988776554321 111110000 000000 011123
Q ss_pred EEEecCCCCCcc-chhHH---HHHHH-HhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcC
Q 003873 476 LIMDEVDGMSAG-DRGGI---ADLIA-SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEG 550 (790)
Q Consensus 476 LIIDEiD~L~~~-~~~~l---~~Ll~-~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Eg 550 (790)
-+||.++.-..- ...++ ...++ .....+.|||+=++..|. ..+..- +...|+...+++..|...+...+
T Consensus 62 hlid~~~~~~~~s~~~f~~~a~~~i~~i~~~gk~pIlvGGt~~Y~---~al~~g---~~~~p~~~~~~r~~l~~~~~~~g 135 (307)
T PRK00091 62 HLIDILDPTESYSVADFQRDALAAIADILARGKLPILVGGTGLYI---KALLEG---LSPLPPADPELRAELEALAAEEG 135 (307)
T ss_pred EeecccChhhcccHHHHHHHHHHHHHHHHhCCCCEEEECcHHHHH---HHhccC---CCCCCCCCHHHHHHHHHHHHhcC
Confidence 466655422111 11111 22222 334567788774444333 233321 11446667778888887666555
Q ss_pred CC--------CCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC
Q 003873 551 LE--------VNEIALEELADRVNGDIRMAINQLQYMSLSLSVIK 587 (790)
Q Consensus 551 i~--------i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~it 587 (790)
.. +++..... ...+|.|++++.|+.+...+..++
T Consensus 136 ~~~l~~~L~~~Dp~~a~~---i~~~d~~Ri~RAlEi~~~tG~~~s 177 (307)
T PRK00091 136 WEALHAELAEIDPEAAAR---IHPNDPQRIIRALEVYELTGKPLS 177 (307)
T ss_pred HHHHHHHHHhcCHHHHhh---cCCCCCchhHHHHHHHHHHCCChh
Confidence 21 33433222 246799999999998876665543
No 310
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.35 E-value=0.00043 Score=71.98 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.2
Q ss_pred CcEEEEECCCCCChHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVC 418 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lA 418 (790)
+..+||||+||+||||+|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 5679999999999999999886
No 311
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.33 E-value=0.0017 Score=73.12 Aligned_cols=230 Identities=20% Similarity=0.265 Sum_probs=128.2
Q ss_pred hhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcE
Q 003873 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA 425 (790)
Q Consensus 346 W~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~i 425 (790)
.++|.+-.---+|.||+++++.|.-.|-.-.......|.+-+ ..-+++|.|.||+-||-|.+.+.+-.--.+
T Consensus 332 ~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIR--------GdINicLmGDPGVAKSQLLkyi~rlapRgv 403 (721)
T KOG0482|consen 332 FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIR--------GDINICLMGDPGVAKSQLLKYISRLAPRGV 403 (721)
T ss_pred HHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceee--------cceeEEecCCCchhHHHHHHHHHhcCcccc
Confidence 444444444448999999999998877762222222222211 135799999999999999999987653222
Q ss_pred EEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHh--h---
Q 003873 426 IEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI--K--- 500 (790)
Q Consensus 426 iEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i--~--- 500 (790)
+.. . |+. .++|-+ ..-+++-+.....--..........|-.|||+|.|...|+.+++++++.- .
T Consensus 404 YTT-G---rGS------SGVGLT-AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaK 472 (721)
T KOG0482|consen 404 YTT-G---RGS------SGVGLT-AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAK 472 (721)
T ss_pred eec-C---CCC------Cccccc-hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhh
Confidence 111 1 110 011100 00011111000000000000233457789999999999999999998742 1
Q ss_pred -------cCCCcEEEEecccc---hh---------hhhhcccccc-------------------------------cccc
Q 003873 501 -------ISKIPIICICNDRY---SQ---------KLKSLVNYCS-------------------------------DLRF 530 (790)
Q Consensus 501 -------~s~~pII~I~nd~~---~~---------~l~~L~sR~~-------------------------------~I~F 530 (790)
..++.|+..+|..| .+ +...|++|+. ...|
T Consensus 473 AGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~f 552 (721)
T KOG0482|consen 473 AGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDF 552 (721)
T ss_pred hccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccC
Confidence 23344555555322 11 1134555532 2558
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--------------cCCHHHHHHHHHHHHhc-----CCCCCHHHH
Q 003873 531 RKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV--------------NGDIRMAINQLQYMSLS-----LSVIKYDDI 591 (790)
Q Consensus 531 ~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s--------------~GDiR~aIn~Lq~~~~~-----~~~it~~~v 591 (790)
.|++.+.|+.++. .|+...-.+++...+.|+... .-..|.++.+|.+.... ...+..+++
T Consensus 553 epl~~~~mR~yI~-~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV 631 (721)
T KOG0482|consen 553 EPLDPNLMRRYIS-LAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDV 631 (721)
T ss_pred CCCCHHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhH
Confidence 8888888887774 466555567777777776532 33577777777543211 456777777
Q ss_pred HHHH
Q 003873 592 RQRL 595 (790)
Q Consensus 592 ~~~~ 595 (790)
.+++
T Consensus 632 ~EAL 635 (721)
T KOG0482|consen 632 NEAL 635 (721)
T ss_pred HHHH
Confidence 7665
No 312
>PLN02840 tRNA dimethylallyltransferase
Probab=97.32 E-value=0.0014 Score=74.03 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=86.5
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcc--cCCCchhHHHHHHHHhhhhccccCCCCCc
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKG--IGGSNANSIKELVSNEALSANMDRSKHPK 473 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~--~g~s~~~~i~e~l~~a~~~~~~~~~~~~~ 473 (790)
....++|.||+|+||||++..||+.++..++..+.-.. ... ++.... ...+ . ..-
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qv--------Yr~~~IgTaKp-t~eE---~-----------~~V 76 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQV--------YRGLDVGSAKP-SLSE---R-----------KEV 76 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccce--------ecceeEEcCCC-CHHH---H-----------cCC
Confidence 34689999999999999999999999988776644211 111 111110 0111 0 011
Q ss_pred eEEEEecCCCCCccc-h---hHHHHHHH-HhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHH
Q 003873 474 TVLIMDEVDGMSAGD-R---GGIADLIA-SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548 (790)
Q Consensus 474 ~VLIIDEiD~L~~~~-~---~~l~~Ll~-~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~ 548 (790)
.--+||-++--..-. . .....+++ .....++|||+=++..|.. .|+. -+.+.|....+++..+...+..
T Consensus 77 ~Hhlidil~p~e~ySv~~F~~~A~~~I~~i~~rgkiPIvVGGTGlYl~---aLl~---G~~~~p~~~~~~r~~l~~~l~~ 150 (421)
T PLN02840 77 PHHLIDILHPSDDYSVGAFFDDARRATQDILNRGRVPIVAGGTGLYLR---WYIY---GKPDVPKSSPEITSEVWSELVD 150 (421)
T ss_pred CeEeEeecCCCCceeHHHHHHHHHHHHHHHHhcCCCEEEEcCccHHHH---HHhc---CCCCCCCCCHHHHHHHHHHHHH
Confidence 123555554322111 1 11222333 3346778888766655543 3322 1223344455666656555444
Q ss_pred cCCCCC-HHHHHHHH--------HHccCCHHHHHHHHHHHHhcCCCCCH
Q 003873 549 EGLEVN-EIALEELA--------DRVNGDIRMAINQLQYMSLSLSVIKY 588 (790)
Q Consensus 549 Egi~i~-~~~l~~Ia--------~~s~GDiR~aIn~Lq~~~~~~~~it~ 588 (790)
.+..-. +.+...|. ....+|.|+++..|+.+...+..++.
T Consensus 151 ~~~~~g~~~l~~~Ll~~~DP~A~~i~pnD~~Ri~RALEV~~~TG~~~S~ 199 (421)
T PLN02840 151 FQKNGDWDAAVELVVNAGDPKARSLPRNDWYRLRRSLEIIKSSGSPPSA 199 (421)
T ss_pred hccccCHHHHHHHHHhccCcHHHhcCCCcHHHHHHHHHHHHHHCCCHHH
Confidence 321111 12233322 23468999999999998776655543
No 313
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.31 E-value=0.0011 Score=74.28 Aligned_cols=107 Identities=20% Similarity=0.366 Sum_probs=62.2
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCC-------CchhHHHHHHHHhhhhcc
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGG-------SNANSIKELVSNEALSAN 465 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~-------s~~~~i~e~l~~a~~~~~ 465 (790)
....+||+|+||+||||++..+|..+ +..++++...+......... ..++- .....+.+++....
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra-~rlg~~~~~l~l~~e~~le~I~~~i~---- 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRA-DRLGISTENLYLLAETNLEDILASIE---- 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHH-HHcCCCcccEEEEccCcHHHHHHHHH----
Confidence 35689999999999999999888765 45677776643221110000 01110 00112223332221
Q ss_pred ccCCCCCceEEEEecCCCCCccc-----------hhHHHHHHHHhhcCCCcEEEEec
Q 003873 466 MDRSKHPKTVLIMDEVDGMSAGD-----------RGGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 466 ~~~~~~~~~VLIIDEiD~L~~~~-----------~~~l~~Ll~~i~~s~~pII~I~n 511 (790)
.....+||||++..+.... +..+..|.+..+...+++|++..
T Consensus 156 ----~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvgh 208 (372)
T cd01121 156 ----ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGH 208 (372)
T ss_pred ----hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 2345799999998875321 12334566666788889888864
No 314
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.0015 Score=73.13 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=28.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh----C-CcEEEEeCCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML----G-FQAIEVNASDSR 434 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel----g-~~iiEinaSd~r 434 (790)
....++|.||+|+||||++..||..+ | ..+..+.....|
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 35799999999999999999998764 4 245555544444
No 315
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.025 Score=62.69 Aligned_cols=195 Identities=15% Similarity=0.179 Sum_probs=121.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC---CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG---FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHP 472 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg---~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~ 472 (790)
..+.+||||+-=-=--..+..+++... +++..+...+.. .....++........ -+.
T Consensus 15 ~~~v~ll~G~d~~l~~e~~~~i~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~s~~l----F~~ 74 (334)
T COG1466 15 LMPVYLLYGEDEGLLEEAADAILKRALADGFDENYSFFDDSE----------------LDWADLLSELESPSL----FGE 74 (334)
T ss_pred CccEEEEecCChhHHHHHHHHHHHHHhccchhhHHhhccccc----------------CCHHHHHHHhhcccc----ccC
Confidence 578999999985444455555555544 222222211110 112223332211111 133
Q ss_pred ceEEEEecCCCCCccch-hHHHHHHHHhhcC-CCcEEEEec---ccchhhhhhcccc--ccccccCCCCHHHHHHHHHHH
Q 003873 473 KTVLIMDEVDGMSAGDR-GGIADLIASIKIS-KIPIICICN---DRYSQKLKSLVNY--CSDLRFRKPRKQEIAKRLMQI 545 (790)
Q Consensus 473 ~~VLIIDEiD~L~~~~~-~~l~~Ll~~i~~s-~~pII~I~n---d~~~~~l~~L~sR--~~~I~F~~pt~~ei~~iL~~I 545 (790)
+.+++|.........+. ..+..+.. ..+ ..-++++.. +........+..- +..+.+.+++..++...+...
T Consensus 75 ~~~v~l~~~~~~~~~~~~~~l~~~~~--~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 152 (334)
T COG1466 75 KRLVVLKNAEKKPNKDKNLALLELAA--LLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKKR 152 (334)
T ss_pred CeeEEEECCCCCcCchhHHHHHHHHc--CCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHHHH
Confidence 46889988887763222 22222222 222 333444443 2222222222222 557899999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 546 ANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSL--SVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 546 ~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~--~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
+...|+.+++++++.|+...+||++.+.+.|+.+++.. ..|+.++|...+.. ....++|+.++.++.
T Consensus 153 ~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~---~~~~~~f~l~dail~ 221 (334)
T COG1466 153 AKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSD---VAEFNIFDLADALLK 221 (334)
T ss_pred HHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhc---cccCCHHHHHHHHHC
Confidence 99999999999999999999999999999998777652 37999999887644 344567999999985
No 316
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.25 E-value=0.0016 Score=81.24 Aligned_cols=163 Identities=15% Similarity=0.240 Sum_probs=101.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCc-hhHHHH-HHHHhhhhccccCCCCCce
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSN-ANSIKE-LVSNEALSANMDRSKHPKT 474 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~-~~~i~e-~l~~a~~~~~~~~~~~~~~ 474 (790)
.-.+||.||.-+|||+++..+|++.|..++.+|-..... ....|..++.... .-.|++ ++-.+. ++.-
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTd-lqeYiGTyvTdd~G~lsFkEGvLVeAl---------R~Gy 957 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTD-LQEYIGTYVTDDDGSLSFKEGVLVEAL---------RRGY 957 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccch-HHHHhhceeecCCCceeeehhHHHHHH---------hcCc
Confidence 457999999999999999999999999999998653211 1112222211111 011221 121211 2234
Q ss_pred EEEEecCCCCCccchhHHHHHHHHh-----hcCC-----Cc---EEEEeccc--c---hhhhhhccccccccccCCCCHH
Q 003873 475 VLIMDEVDGMSAGDRGGIADLIASI-----KISK-----IP---IICICNDR--Y---SQKLKSLVNYCSDLRFRKPRKQ 536 (790)
Q Consensus 475 VLIIDEiD~L~~~~~~~l~~Ll~~i-----~~s~-----~p---II~I~nd~--~---~~~l~~L~sR~~~I~F~~pt~~ 536 (790)
-|++||+.......-.++..|++-- ..+. .| ++.+-|.+ | .-+-+++++|+..++|..+..+
T Consensus 958 WIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddiped 1037 (4600)
T COG5271 958 WIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPED 1037 (4600)
T ss_pred EEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHH
Confidence 7899999877666667777777521 1111 11 22222321 1 1122789999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHH
Q 003873 537 EIAKRLMQIANAEGLEVNEIALEELADRVNG-DIRMAIN 574 (790)
Q Consensus 537 ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G-DiR~aIn 574 (790)
++..+|.. ++.+.+.....|++...| .+|+-++
T Consensus 1038 Ele~ILh~-----rc~iapSyakKiVeVyr~Ls~rRs~~ 1071 (4600)
T COG5271 1038 ELEEILHG-----RCEIAPSYAKKIVEVYRGLSSRRSIN 1071 (4600)
T ss_pred HHHHHHhc-----cCccCHHHHHHHHHHHHHhhhhhhHH
Confidence 99999884 457888888888876533 4444444
No 317
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0023 Score=69.42 Aligned_cols=161 Identities=21% Similarity=0.240 Sum_probs=90.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCc-hhHHHHHHHHhhhhccccCCCCCceE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSN-ANSIKELVSNEALSANMDRSKHPKTV 475 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~-~~~i~e~l~~a~~~~~~~~~~~~~~V 475 (790)
++.++|+||.++|||.++-.||+.+|.++|.++.-. +..++.-.+ .-...+. . .- .-
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQ--------vYr~mdIGTAKps~~e~-~------------~v-pH 60 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQ--------VYRGLDIGTAKPSLEEL-A------------GV-PH 60 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhh--------hcCCCcccCCCCCHHHH-c------------CC-CE
Confidence 578999999999999999999999999988876432 222221111 1111111 1 11 13
Q ss_pred EEEecCCCCCc-cch---hHHHHHHHHh-hcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcC
Q 003873 476 LIMDEVDGMSA-GDR---GGIADLIASI-KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEG 550 (790)
Q Consensus 476 LIIDEiD~L~~-~~~---~~l~~Ll~~i-~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Eg 550 (790)
.+||.+|---. ... ......++.+ ...+.|||+=++-.|.+. | ..-+.+.|....+++..+...+...|
T Consensus 61 hliDi~~p~e~ysa~~f~~~a~~~i~~i~~rgk~pIlVGGTglY~~a---L---~~g~~~~p~~~~~~r~~~~~~~~~~g 134 (308)
T COG0324 61 HLIDIRDPTESYSAAEFQRDALAAIDDILARGKLPILVGGTGLYLKA---L---LEGLSLLPEADPEVRRRLEAELAELG 134 (308)
T ss_pred EEecccCccccccHHHHHHHHHHHHHHHHhCCCCcEEEccHHHHHHH---H---HcCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 57777664332 111 2222333333 455778877555433322 2 12234445545555555555554444
Q ss_pred C--------CCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH
Q 003873 551 L--------EVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKY 588 (790)
Q Consensus 551 i--------~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~it~ 588 (790)
. .+++... ++....|.|+++..|+.+-..+.+++.
T Consensus 135 ~~~L~~~L~~~Dp~~a---~~i~pnD~~Ri~RALEv~~~tGk~~s~ 177 (308)
T COG0324 135 NDALHAELKKIDPEAA---AKIHPNDPQRIIRALEVYYLTGKPISE 177 (308)
T ss_pred HHHHHHHHHhhCHHHH---HhcCCCchhHHHHHHHHHHHHCCCHHH
Confidence 3 2333322 233468999999999988887766643
No 318
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.23 E-value=0.0012 Score=71.70 Aligned_cols=158 Identities=16% Similarity=0.140 Sum_probs=85.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhccc--CCCchhHHHHHHHHhhhhccccCCCCCce
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI--GGSNANSIKELVSNEALSANMDRSKHPKT 474 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~--g~s~~~~i~e~l~~a~~~~~~~~~~~~~~ 474 (790)
.+.++|.||+|+|||.||-.||+. +.++|..++- ++.+++ |.... ...+ .. .-+
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~--------QvYr~ldIgTaKp-t~eE---~~---------~i~-- 59 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI--------QVYKEFDIASCKP-SKEL---RK---------HIK-- 59 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH--------HHHCCCceecCCC-CHHH---Hc---------CCC--
Confidence 358999999999999999999999 4444443321 233322 11111 1111 00 011
Q ss_pred EEEEecCCCCCccc-h---hHHHHHHHH-hhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHc
Q 003873 475 VLIMDEVDGMSAGD-R---GGIADLIAS-IKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAE 549 (790)
Q Consensus 475 VLIIDEiD~L~~~~-~---~~l~~Ll~~-i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~E 549 (790)
--+||-+|---.-. . .....+++. ....++||||=++..|... |+. -+.+.++...+++..+...+..+
T Consensus 60 Hhlid~~~p~e~~sv~~f~~~a~~~i~~i~~~gk~PilvGGTglYi~a---ll~---gl~~~p~~~~~~r~~~~~~~~~~ 133 (300)
T PRK14729 60 HHLVDFLEPIKEYNLGIFYKEALKIIKELRQQKKIPIFVGGSAFYFKH---LKY---GLPSTPPVSSKIRIYVNNLFTLK 133 (300)
T ss_pred eeeeeccCCCCceeHHHHHHHHHHHHHHHHHCCCCEEEEeCchHHHHH---HHc---CCCCCCCCCHHHHHHHHHHHHhc
Confidence 23566555322211 1 122223332 2456788888776555433 332 23333455666676666655554
Q ss_pred CC--------CCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC
Q 003873 550 GL--------EVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIK 587 (790)
Q Consensus 550 gi--------~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~it 587 (790)
|. .+||+.. .....+|.|+++..|+.+...+..++
T Consensus 134 g~~~l~~~L~~~DP~~A---~~i~pnd~~Ri~RALEv~~~tG~~~s 176 (300)
T PRK14729 134 GKSYLLEELKRVDFIRY---ESINKNDIYRIKRSLEVYYQTGIPIS 176 (300)
T ss_pred CHHHHHHHHHhcCHHHH---hhCCcCCHHHHHHHHHHHHHhCCChH
Confidence 42 2333322 22346899999999999877765554
No 319
>PRK14532 adenylate kinase; Provisional
Probab=97.23 E-value=0.005 Score=62.12 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=27.0
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.++|.||||+||||+++.||+.+|+.++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 489999999999999999999999877654
No 320
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.22 E-value=0.0077 Score=61.14 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.++.++|+||+|+||||+++.|.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998876
No 321
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=97.21 E-value=0.001 Score=82.24 Aligned_cols=77 Identities=30% Similarity=0.392 Sum_probs=68.2
Q ss_pred CCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecC--CCCcchHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDE--DIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 203 ~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~--~~g~~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
.+|.|+.|++.|.| +-.+.+++.+|+.+||.|.+.|++.|+.||+-. +-...|+++|+++||+||+|+-+.+.+...
T Consensus 392 ~~l~~~~i~i~G~~-~~~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds~~~~ 470 (981)
T PLN03123 392 EFLGDLKVSIVGAS-KEKVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDCFKKK 470 (981)
T ss_pred CCcCCeEEEEecCC-CCcHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHHHhcc
Confidence 57999999999999 467899999999999999999999999998865 224589999999999999999988888764
No 322
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.21 E-value=0.00097 Score=76.69 Aligned_cols=107 Identities=18% Similarity=0.344 Sum_probs=63.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCC-------CchhHHHHHHHHhhhhcc
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGG-------SNANSIKELVSNEALSAN 465 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~-------s~~~~i~e~l~~a~~~~~ 465 (790)
....+||+|+||+||||++..+|..+ +..++++...+......... ..++- .....+.+++....
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra-~rlg~~~~~l~~~~e~~l~~i~~~i~---- 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRA-ERLGLPSDNLYLLAETNLEAILATIE---- 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHH-HHcCCChhcEEEeCCCCHHHHHHHHH----
Confidence 35689999999999999999888765 67888887654321110000 01110 00112333333221
Q ss_pred ccCCCCCceEEEEecCCCCCccc-----------hhHHHHHHHHhhcCCCcEEEEec
Q 003873 466 MDRSKHPKTVLIMDEVDGMSAGD-----------RGGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 466 ~~~~~~~~~VLIIDEiD~L~~~~-----------~~~l~~Ll~~i~~s~~pII~I~n 511 (790)
.....+||||++..+.... +..+..|.+..+...+++|++..
T Consensus 154 ----~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~h 206 (446)
T PRK11823 154 ----EEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGH 206 (446)
T ss_pred ----hhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 2345699999998876421 12333466666788899998853
No 323
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.20 E-value=0.00098 Score=74.37 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=22.3
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..+|+.|.||||||.+|-.+++++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 478999999999999999999988
No 324
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.20 E-value=0.00072 Score=78.54 Aligned_cols=180 Identities=18% Similarity=0.189 Sum_probs=107.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh--CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCce
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML--GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel--g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~ 474 (790)
.-.+||+|.+|+||-.+++++.+.. .-.++-+||...... .++..+.+.....+..+..+.. .....+....
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~---liesELFGy~~GafTga~~kG~---~g~~~~A~gG 409 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEA---LIESELFGYVAGAFTGARRKGY---KGKLEQADGG 409 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHH---hhhHHHhccCccccccchhccc---cccceecCCC
Confidence 3579999999999999999998765 356889998754332 3333322222111211111110 0111133456
Q ss_pred EEEEecCCCCCccchhHHHHHHHHhh-----cCCC----cEEEEecccchhhh------hhcccccc--ccccCCCCHH-
Q 003873 475 VLIMDEVDGMSAGDRGGIADLIASIK-----ISKI----PIICICNDRYSQKL------KSLVNYCS--DLRFRKPRKQ- 536 (790)
Q Consensus 475 VLIIDEiD~L~~~~~~~l~~Ll~~i~-----~s~~----pII~I~nd~~~~~l------~~L~sR~~--~I~F~~pt~~- 536 (790)
.||+|||..|.-..|..|+.+++.-. .+++ .||+.++-...... +.|.-|-. .|.++++...
T Consensus 410 tlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~ 489 (606)
T COG3284 410 TLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERS 489 (606)
T ss_pred ccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhccc
Confidence 89999999999988888888887432 1122 24444443333332 23334433 3444444322
Q ss_pred HHHHHHHHHHHHc---CCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhc
Q 003873 537 EIAKRLMQIANAE---GLEVNEIALEELADRV-NGDIRMAINQLQYMSLS 582 (790)
Q Consensus 537 ei~~iL~~I~~~E---gi~i~~~~l~~Ia~~s-~GDiR~aIn~Lq~~~~~ 582 (790)
+....|.++..++ .+.++++++..|...- .||+|++.|.|+.++..
T Consensus 490 d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l 539 (606)
T COG3284 490 DRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAAL 539 (606)
T ss_pred ccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Confidence 2334444555444 4779999998877654 89999999999988754
No 325
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.20 E-value=0.004 Score=66.76 Aligned_cols=122 Identities=9% Similarity=0.063 Sum_probs=68.4
Q ss_pred CCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC---CcEEEE
Q 003873 352 PKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG---FQAIEV 428 (790)
Q Consensus 352 P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg---~~iiEi 428 (790)
+.+++++--.+..++.|+.++.. ....++|+||+|+||||+++++...+. ..++.+
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~---------------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iiti 114 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEK---------------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITV 114 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEE
Confidence 45778887777777777666654 235799999999999999999987773 334444
Q ss_pred eCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEE
Q 003873 429 NASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIIC 508 (790)
Q Consensus 429 naSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~ 508 (790)
.-....... ......+.......+.+.+..+. ...+.+|+|+|+-. ......+++.... ...++.
T Consensus 115 Edp~E~~~~-~~~q~~v~~~~~~~~~~~l~~~l--------R~~PD~i~vgEiR~-----~e~a~~~~~aa~t-Gh~v~t 179 (264)
T cd01129 115 EDPVEYQIP-GINQVQVNEKAGLTFARGLRAIL--------RQDPDIIMVGEIRD-----AETAEIAVQAALT-GHLVLS 179 (264)
T ss_pred CCCceecCC-CceEEEeCCcCCcCHHHHHHHHh--------ccCCCEEEeccCCC-----HHHHHHHHHHHHc-CCcEEE
Confidence 322111000 00000011111123445554432 34567999999974 3334445554433 334444
Q ss_pred E
Q 003873 509 I 509 (790)
Q Consensus 509 I 509 (790)
+
T Consensus 180 T 180 (264)
T cd01129 180 T 180 (264)
T ss_pred E
Confidence 3
No 326
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.17 E-value=0.0029 Score=72.35 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=29.4
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh-----CCcEEEEeCCCCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML-----GFQAIEVNASDSR 434 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel-----g~~iiEinaSd~r 434 (790)
.+.++|.||+|+||||++..||..+ +..+..+++...|
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 4689999999999999988877543 4667777765554
No 327
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.17 E-value=0.002 Score=66.05 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQ 419 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAk 419 (790)
.+.++|+||+|+||||+++.++.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999999984
No 328
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.17 E-value=0.0029 Score=67.75 Aligned_cols=104 Identities=14% Similarity=0.253 Sum_probs=61.5
Q ss_pred CCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC---CcEEEE
Q 003873 352 PKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG---FQAIEV 428 (790)
Q Consensus 352 P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg---~~iiEi 428 (790)
+-++++|.-.....+.+..+|..-- ....++||+||+|+||||++.+++..+. ..++.+
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v------------------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~i 161 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAV------------------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTI 161 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCH------------------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEE
T ss_pred cccHhhccCchhhHHHHHHHHhhcc------------------ccceEEEEECCCccccchHHHHHhhhccccccceEEe
Confidence 3478889888877777777777610 1257999999999999999999998883 344444
Q ss_pred eCCCCCC---chhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCC
Q 003873 429 NASDSRG---KADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGM 484 (790)
Q Consensus 429 naSd~rs---k~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L 484 (790)
....... .....+... .....+.+.+..+. ...+.+|+|.|+-.-
T Consensus 162 Ed~~E~~l~~~~~~~~~~~---~~~~~~~~~l~~~L--------R~~pD~iiigEiR~~ 209 (270)
T PF00437_consen 162 EDPPELRLPGPNQIQIQTR---RDEISYEDLLKSAL--------RQDPDVIIIGEIRDP 209 (270)
T ss_dssp ESSS-S--SCSSEEEEEEE---TTTBSHHHHHHHHT--------TS--SEEEESCE-SC
T ss_pred ccccceeecccceEEEEee---cCcccHHHHHHHHh--------cCCCCcccccccCCH
Confidence 4322110 000001100 11234555665542 345679999999853
No 329
>PRK10536 hypothetical protein; Provisional
Probab=97.16 E-value=0.0068 Score=64.28 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=21.2
Q ss_pred cEEEEECCCCCChHHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAke 420 (790)
..++++||+|||||++|.+++.+
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 330
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.14 E-value=0.0015 Score=71.23 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..++||+||+|+||||++++++..+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999887
No 331
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.14 E-value=0.00048 Score=67.99 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=29.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.+..++|+|+||+||||+++.||+.+|+.++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 356899999999999999999999999988764
No 332
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.13 E-value=0.0096 Score=65.92 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=24.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
..++|++|++|+||||++++++..+.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999999885
No 333
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.13 E-value=0.0034 Score=64.71 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.8
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
..++.++|+||+||||||+++.|.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45688999999999999999999754
No 334
>PRK08118 topology modulation protein; Reviewed
Probab=97.12 E-value=0.00042 Score=69.03 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=29.3
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEEeC
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEina 430 (790)
-++|.||||+||||+|+.|++.++++++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999888764
No 335
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.11 E-value=0.0025 Score=65.29 Aligned_cols=41 Identities=32% Similarity=0.357 Sum_probs=30.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCch
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKA 437 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~ 437 (790)
++.++|.||+|+||||++--||..+ +..+.-+++...|...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga 44 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGA 44 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccH
Confidence 4689999999999999998887665 6666666666666543
No 336
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=97.10 E-value=0.0013 Score=65.04 Aligned_cols=111 Identities=22% Similarity=0.347 Sum_probs=71.4
Q ss_pred CCceEEEEecCCCCCc-cchhHHHHHHHHhhc--CCCcEEEEecccch---hhhhhccccccccccCCCCHHHHHHHHHH
Q 003873 471 HPKTVLIMDEVDGMSA-GDRGGIADLIASIKI--SKIPIICICNDRYS---QKLKSLVNYCSDLRFRKPRKQEIAKRLMQ 544 (790)
Q Consensus 471 ~~~~VLIIDEiD~L~~-~~~~~l~~Ll~~i~~--s~~pII~I~nd~~~---~~l~~L~sR~~~I~F~~pt~~ei~~iL~~ 544 (790)
..++||+|.+++.+.. .....+..+.+.+.. ..+.+|+.+++... .....+...+..+.|.++...++..+++.
T Consensus 56 ~~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~ 135 (172)
T PF06144_consen 56 GDKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKE 135 (172)
T ss_dssp SSEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHH
T ss_pred CCCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHH
Confidence 4568999999955421 122344455555543 44455555552222 23355667788899999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 003873 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL 581 (790)
Q Consensus 545 I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~ 581 (790)
.+.+.|+.+++++++.|++..++|++.+.+.|+-+++
T Consensus 136 ~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~L 172 (172)
T PF06144_consen 136 RAKKNGLKIDPDAAQYLIERVGNDLSLLQNELEKLSL 172 (172)
T ss_dssp HHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999987763
No 337
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.10 E-value=0.011 Score=67.57 Aligned_cols=40 Identities=30% Similarity=0.388 Sum_probs=32.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRG 435 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rs 435 (790)
.+..++|+|++|+||||++..||..+ |+.+.-+.+...|.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 46789999999999999999998777 67777777655554
No 338
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.08 E-value=0.0014 Score=65.54 Aligned_cols=107 Identities=17% Similarity=0.262 Sum_probs=63.4
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCch-hhhhhccc---CC-----CchhHHHHHHHHhhhhccccCC
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA-DAKISKGI---GG-----SNANSIKELVSNEALSANMDRS 469 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~-~~~i~~~~---g~-----s~~~~i~e~l~~a~~~~~~~~~ 469 (790)
.+||+||||+|||++|..++..++..++++......... ...+.... +. .....+.+++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~--------- 73 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD--------- 73 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh---------
Confidence 689999999999999999999988777776544321110 01111000 00 0011233333221
Q ss_pred CCCceEEEEecCCCCCc-----cc----hhHHHHHHHHhhcCCCcEEEEecccc
Q 003873 470 KHPKTVLIMDEVDGMSA-----GD----RGGIADLIASIKISKIPIICICNDRY 514 (790)
Q Consensus 470 ~~~~~VLIIDEiD~L~~-----~~----~~~l~~Ll~~i~~s~~pII~I~nd~~ 514 (790)
.....+|+||-+..+.. .+ +..+..+++.+.....++|+++|+..
T Consensus 74 ~~~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs~Evg 127 (170)
T PRK05800 74 AAPGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVTNEVG 127 (170)
T ss_pred cCCCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 12245899998776632 11 23456677777888889999998643
No 339
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.07 E-value=0.0019 Score=73.67 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=46.2
Q ss_pred hcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 349 KYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 349 KY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
.+...++++|.........+..++.. +...+|++||.|+||||+.+.+.++++.
T Consensus 231 ~~~~l~l~~Lg~~~~~~~~~~~~~~~---------------------p~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 231 DQVILDLEKLGMSPFQLARLLRLLNR---------------------PQGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred ccccCCHHHhCCCHHHHHHHHHHHhC---------------------CCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 33477899999999998888888876 4578999999999999999999999854
No 340
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.06 E-value=0.0025 Score=65.24 Aligned_cols=25 Identities=20% Similarity=0.431 Sum_probs=22.4
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
..++|+||+|+||||++++++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3689999999999999999988874
No 341
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.05 E-value=0.0034 Score=80.92 Aligned_cols=177 Identities=14% Similarity=0.181 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-------CCcEEEEeCCCC
Q 003873 361 NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML-------GFQAIEVNASDS 433 (790)
Q Consensus 361 ~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel-------g~~iiEinaSd~ 433 (790)
++.+.+.+..+|.. ..+.++|.|.+||||||+++.+...+ ++.++-+-++
T Consensus 837 t~~Qr~Av~~iLts---------------------~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPT-- 893 (1623)
T PRK14712 837 TSGQRAATRMILET---------------------SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPT-- 893 (1623)
T ss_pred CHHHHHHHHHHHhC---------------------CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEech--
Confidence 56666677777664 24789999999999999987775533 4455544332
Q ss_pred CCchhhhhhcccCCCchhHHHHHHHHhhhhc-cccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 434 RGKADAKISKGIGGSNANSIKELVSNEALSA-NMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 434 rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~-~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
++....+.. . +.....+..||....... ..........||||||+-.+...+ +..|+..+......||+++..
T Consensus 894 -gkAa~~L~e-~-Gi~A~TIasfL~~~~~~~~~~~~~~~~~~llIVDEASMV~~~~---m~~ll~~~~~~garvVLVGD~ 967 (1623)
T PRK14712 894 -HRAVGEMRS-A-GVDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTD---MARAYALIAAGGGRAVASGDT 967 (1623)
T ss_pred -HHHHHHHHH-h-CchHhhHHHHhccccchhhcccCCCCCCcEEEEEccccccHHH---HHHHHHhhhhCCCEEEEEcch
Confidence 121112222 1 223344666665321000 000011345799999999887644 334555555566789999864
Q ss_pred cchhhh---hhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 003873 513 RYSQKL---KSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578 (790)
Q Consensus 513 ~~~~~l---~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~ 578 (790)
...+-+ .+|..-. .-..+....|.++++ -.++....+...+.|++..+|..|+.
T Consensus 968 ~QL~sV~aG~~F~~lq---~~~~~~ta~L~eI~R---------Q~~elr~AV~~~~~g~~~~AL~~L~~ 1024 (1623)
T PRK14712 968 DQLQAIAPGQPFRLQQ---TRSAADVVIMKEIVR---------QTPELREAVYSLINRDVERALSGLER 1024 (1623)
T ss_pred hhcCCCCCCHHHHHHH---HcCCCCeEEeCeeec---------CCHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 332222 1111100 000000001111111 13455556666677889888888864
No 342
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.03 E-value=0.00075 Score=78.33 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=44.8
Q ss_pred CCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 353 KTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 353 ~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.-|+|+.|.++++++|..+|..--.. . ....++++|.||||+|||++|+.||+.+.
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~g-----l---------~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQG-----L---------EEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHh-----c---------CCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 46889999999999999999652111 0 12347999999999999999999999883
No 343
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.02 E-value=0.0013 Score=62.03 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=40.2
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..|.||.-+++.|...|..|..+. ....+-.+-|+||+|||||.++++||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~-------------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP-------------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC-------------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 368999988888888888754320 01234456699999999999999999996
No 344
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.00 E-value=0.0026 Score=77.43 Aligned_cols=108 Identities=22% Similarity=0.324 Sum_probs=59.5
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---C--CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhc-cc-cCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---G--FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA-NM-DRS 469 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g--~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~-~~-~~~ 469 (790)
.+.++|+|+|||||||+++.+...+ + ..++-+.++ ++....+....|. ....+..++....... .. ...
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApT---g~AA~~L~e~~g~-~a~Tih~lL~~~~~~~~~~~~~~ 413 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPT---GRAAKRLGEVTGL-TASTIHRLLGYGPDTFRHNHLED 413 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCc---hHHHHHHHHhcCC-ccccHHHHhhccCCccchhhhhc
Confidence 3689999999999999999987655 3 333333322 1111233322221 1223444443211000 00 001
Q ss_pred CCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 470 ~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
.....+|||||+..+... .+..|+..+. ....||++...
T Consensus 414 ~~~~~llIvDEaSMvd~~---~~~~Ll~~~~-~~~rlilvGD~ 452 (720)
T TIGR01448 414 PIDCDLLIVDESSMMDTW---LALSLLAALP-DHARLLLVGDT 452 (720)
T ss_pred cccCCEEEEeccccCCHH---HHHHHHHhCC-CCCEEEEECcc
Confidence 134579999999988653 3455666544 45678888754
No 345
>PRK14974 cell division protein FtsY; Provisional
Probab=97.00 E-value=0.0059 Score=67.58 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=30.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRG 435 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rs 435 (790)
.+..++|+||+|+||||++..+|..+ |+.+.-+++...|.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 35789999999999999988888765 66666665544443
No 346
>PRK14528 adenylate kinase; Provisional
Probab=97.00 E-value=0.0069 Score=61.38 Aligned_cols=31 Identities=42% Similarity=0.743 Sum_probs=27.6
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
+.++|.||||+||||+++.+|+.+|+.++..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4689999999999999999999999877654
No 347
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.00 E-value=0.042 Score=62.31 Aligned_cols=96 Identities=16% Similarity=0.305 Sum_probs=60.9
Q ss_pred CCceEEEEecCCCCCc---cc-h----hHHHHHHHHhhcCCCc---EEEEecccch-------hhhhhcccc--------
Q 003873 471 HPKTVLIMDEVDGMSA---GD-R----GGIADLIASIKISKIP---IICICNDRYS-------QKLKSLVNY-------- 524 (790)
Q Consensus 471 ~~~~VLIIDEiD~L~~---~~-~----~~l~~Ll~~i~~s~~p---II~I~nd~~~-------~~l~~L~sR-------- 524 (790)
.+.-+|+|||++++.. .. + +.++.|++.+...+.| ||+.++..+. ...++|.+|
T Consensus 238 y~GLlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~ 317 (416)
T PF10923_consen 238 YKGLLILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFAD 317 (416)
T ss_pred CCceEEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhcccccc
Confidence 3467999999998754 12 2 4566666655554444 5555553322 112344433
Q ss_pred -------ccccccCCCCHHHHHHHHHHHHHH------cCCCCCHHHHHHHHHHcc
Q 003873 525 -------CSDLRFRKPRKQEIAKRLMQIANA------EGLEVNEIALEELADRVN 566 (790)
Q Consensus 525 -------~~~I~F~~pt~~ei~~iL~~I~~~------Egi~i~~~~l~~Ia~~s~ 566 (790)
..+|++.+++.+++..++.++..- ....++++.+..+++.+.
T Consensus 318 ~~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~~ 372 (416)
T PF10923_consen 318 DGFDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHVA 372 (416)
T ss_pred ccccCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Confidence 335889999999999888876542 224688888888887663
No 348
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.00064 Score=65.50 Aligned_cols=34 Identities=29% Similarity=0.603 Sum_probs=30.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
...++|++|-|||||||++..||..+|+.+|++.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 4578999999999999999999999999887763
No 349
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.98 E-value=0.0044 Score=69.80 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
..++++.||+|||||+++..++..
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHH
Confidence 478999999999999999988765
No 350
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.97 E-value=0.0026 Score=58.88 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=20.8
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
+.++|+||+|+|||+++..++..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999998887766
No 351
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.0046 Score=69.22 Aligned_cols=96 Identities=14% Similarity=0.155 Sum_probs=55.3
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcc---cC-----CCchhHHHHHHHHhhhhcc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKG---IG-----GSNANSIKELVSNEALSAN 465 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~---~g-----~s~~~~i~e~l~~a~~~~~ 465 (790)
++.++|.||+|+||||++..||..+ |..+..+++...|......+..+ .+ ......+.+.+.....
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~--- 317 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE--- 317 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh---
Confidence 4789999999999999999998776 56666666654542211111111 11 1122334444433210
Q ss_pred ccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh
Q 003873 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK 500 (790)
Q Consensus 466 ~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~ 500 (790)
.....+||||-...... +...+.++...+.
T Consensus 318 ----~~~~DvVLIDTaGRs~k-d~~lm~EL~~~lk 347 (436)
T PRK11889 318 ----EARVDYILIDTAGKNYR-ASETVEEMIETMG 347 (436)
T ss_pred ----ccCCCEEEEeCccccCc-CHHHHHHHHHHHh
Confidence 12357999998887664 3344555555443
No 352
>PRK03839 putative kinase; Provisional
Probab=96.94 E-value=0.0008 Score=67.49 Aligned_cols=31 Identities=35% Similarity=0.805 Sum_probs=28.1
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
.++|.|+||+||||+++.||+.+++.++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999887754
No 353
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.0056 Score=59.92 Aligned_cols=109 Identities=18% Similarity=0.297 Sum_probs=57.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCc--EEEEeCCCCCCchhhhhhcccC---CCchhHHH-HHHHHhhhhccccCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQ--AIEVNASDSRGKADAKISKGIG---GSNANSIK-ELVSNEALSANMDRS 469 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~--iiEinaSd~rsk~~~~i~~~~g---~s~~~~i~-e~l~~a~~~~~~~~~ 469 (790)
....+.|.||+|+||||++++++..+... -+.++...............++ .-.....+ -.+..+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l-------- 95 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARAL-------- 95 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHH--------
Confidence 34789999999999999999999766322 2333322111000000000000 00011111 1111111
Q ss_pred CCCceEEEEecCC-CCCccchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 470 KHPKTVLIMDEVD-GMSAGDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 470 ~~~~~VLIIDEiD-~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
...+.++++||.. +|....+..+..++..+......+|+++.+
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~ 139 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 1235799999987 454455666666666554444567777664
No 354
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.94 E-value=0.0048 Score=64.17 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=30.1
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNAS 431 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaS 431 (790)
....++|+||||+|||+++..+|.+. +..++++...
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45789999999999999999988654 7778888765
No 355
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.93 E-value=0.0055 Score=64.31 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=27.2
Q ss_pred CCcEEEEECCCCCChHHHHHHH-HHHh--CCcEEEEeCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLV-CQML--GFQAIEVNASD 432 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~l-Akel--g~~iiEinaSd 432 (790)
....++|+||+||||||++..+ +..+ |..++++....
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~ 62 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL 62 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4568999999999999997544 4332 66777776543
No 356
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.93 E-value=0.0022 Score=68.04 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
...-++|.||+||||||+++.+++.+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 3567999999999999999999988753
No 357
>PRK13947 shikimate kinase; Provisional
Probab=96.93 E-value=0.00087 Score=66.37 Aligned_cols=32 Identities=38% Similarity=0.500 Sum_probs=29.0
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEEeC
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEina 430 (790)
+++|.|+||+||||+++.||+.+|+.++..+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 69999999999999999999999999877543
No 358
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.90 E-value=0.0077 Score=59.90 Aligned_cols=36 Identities=36% Similarity=0.474 Sum_probs=29.7
Q ss_pred EEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCC
Q 003873 399 AAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSR 434 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~r 434 (790)
.++|+||||+||||++..++..+ |..++.+++...+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 57899999999999999998776 7778777766544
No 359
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.89 E-value=0.00083 Score=64.20 Aligned_cols=30 Identities=43% Similarity=0.596 Sum_probs=25.9
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.++|+||||+||||+|+.+++.+++.++..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~ 30 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQ 30 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeH
Confidence 379999999999999999999999655543
No 360
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.88 E-value=0.0085 Score=73.27 Aligned_cols=104 Identities=20% Similarity=0.272 Sum_probs=60.8
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCce
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~ 474 (790)
+.++|+|+|||||||+++.+...+ |+.++-+-++. +....+....|. ....+..++..... .........
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg---~Aa~~L~~~~g~-~a~Ti~~~~~~~~~---~~~~~~~~~ 441 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSG---KAAEGLQAESGI-ESRTLASLEYAWAN---GRDLLSDKD 441 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcH---HHHHHHHhccCC-ceeeHHHHHhhhcc---CcccCCCCc
Confidence 578999999999999999987544 77776664432 111122222121 11223333221100 001123567
Q ss_pred EEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEec
Q 003873 475 VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 475 VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~n 511 (790)
+|||||+-.+.... +..|+.........||++.-
T Consensus 442 llIvDEasMv~~~~---~~~Ll~~~~~~~~kliLVGD 475 (744)
T TIGR02768 442 VLVIDEAGMVGSRQ---MARVLKEAEEAGAKVVLVGD 475 (744)
T ss_pred EEEEECcccCCHHH---HHHHHHHHHhcCCEEEEECC
Confidence 99999999887543 44566655556677888775
No 361
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.00077 Score=66.69 Aligned_cols=30 Identities=47% Similarity=0.845 Sum_probs=27.7
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
.++|+|.||+||||++..|+ ++|+.++++|
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 58899999999999999999 9999988876
No 362
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.00089 Score=65.46 Aligned_cols=29 Identities=38% Similarity=0.657 Sum_probs=26.2
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
.+-++|||||||||+++.||+.+|+.++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 36799999999999999999999998764
No 363
>PRK00625 shikimate kinase; Provisional
Probab=96.87 E-value=0.001 Score=66.77 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=29.0
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
.++|+|.||+||||+++.+|+.+++.++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999988875
No 364
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.86 E-value=0.0058 Score=79.78 Aligned_cols=108 Identities=17% Similarity=0.300 Sum_probs=63.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh-------CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhh-ccccC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML-------GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS-ANMDR 468 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel-------g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~-~~~~~ 468 (790)
.+.++|.|.+||||||+++.+...+ ++.++-+-++. +....+.. . +.....|..||...... .....
T Consensus 984 dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTg---rAAk~L~e-~-Gi~A~TI~s~L~~~~~~~~~~~~ 1058 (1747)
T PRK13709 984 DRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTH---RAVGEMRS-A-GVDAQTLASFLHDTQLQQRSGET 1058 (1747)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcH---HHHHHHHh-c-CcchhhHHHHhcccccccccccC
Confidence 4799999999999999999887664 34444443321 11112222 1 22334556666432110 00001
Q ss_pred CCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 469 SKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 469 ~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
......||||||+-.+...+ +..|+..+......+|+++..
T Consensus 1059 ~~~~~~llIVDEaSMv~~~~---m~~Ll~~~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1059 PDFSNTLFLLDESSMVGNTD---MARAYALIAAGGGRAVSSGDT 1099 (1747)
T ss_pred CCCCCcEEEEEccccccHHH---HHHHHHhhhcCCCEEEEecch
Confidence 12345799999999887543 455666666566789988864
No 365
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=96.85 E-value=0.0057 Score=71.42 Aligned_cols=127 Identities=17% Similarity=0.273 Sum_probs=68.4
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHH-HhhhhccccCCCCCceEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVS-NEALSANMDRSKHPKTVL 476 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~-~a~~~~~~~~~~~~~~VL 476 (790)
-++||+|.||+|||.+.+.+++.+.--+ +.+. ..+.. .-+-.++ ....+-++++- ...+- .....|-
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~-yTSG--kGsSa-vGLTayV--trd~dtkqlVLesGALV------LSD~GiC 530 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGV-YTSG--KGSSA-VGLTAYV--TKDPDTRQLVLESGALV------LSDNGIC 530 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcce-eecC--Cccch-hcceeeE--EecCccceeeeecCcEE------EcCCceE
Confidence 5899999999999999999998773211 1110 00000 0000000 00000111111 11110 1234577
Q ss_pred EEecCCCCCccchhHHHHHHHHh--h----------cCCCcEEEEeccc---ch---------hhhhhccccccccc--c
Q 003873 477 IMDEVDGMSAGDRGGIADLIASI--K----------ISKIPIICICNDR---YS---------QKLKSLVNYCSDLR--F 530 (790)
Q Consensus 477 IIDEiD~L~~~~~~~l~~Ll~~i--~----------~s~~pII~I~nd~---~~---------~~l~~L~sR~~~I~--F 530 (790)
.|||+|.|+...+..|++.++.- . ..++.||..+|.. |. .+-++|++|+..|. |
T Consensus 531 CIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylll 610 (804)
T KOG0478|consen 531 CIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLL 610 (804)
T ss_pred EchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEe
Confidence 89999999999999999998742 1 2344455555521 11 12268889987644 4
Q ss_pred CCCCHH
Q 003873 531 RKPRKQ 536 (790)
Q Consensus 531 ~~pt~~ 536 (790)
.+++..
T Consensus 611 D~~DE~ 616 (804)
T KOG0478|consen 611 DKPDER 616 (804)
T ss_pred cCcchh
Confidence 555544
No 366
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.0035 Score=63.66 Aligned_cols=25 Identities=48% Similarity=0.594 Sum_probs=23.0
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
+.++|+|+||+||||+|+-||++|.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 4689999999999999999999993
No 367
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.85 E-value=0.011 Score=63.54 Aligned_cols=134 Identities=16% Similarity=0.300 Sum_probs=75.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceE
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTV 475 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~V 475 (790)
+..++||.|..|+||++++++.|--.+++++++..+..-+ +.+. .++++.++..+.. ++.+.+
T Consensus 30 ~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~-----~~~f-----~~dLk~~~~~ag~-------~~~~~v 92 (268)
T PF12780_consen 30 PRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS-----IKDF-----KEDLKKALQKAGI-------KGKPTV 92 (268)
T ss_dssp TTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH-----HHHH-----HHHHHHHHHHHHC-------S-S-EE
T ss_pred CCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC-----HHHH-----HHHHHHHHHHHhc-------cCCCeE
Confidence 3468999999999999999999999999999887553211 1100 1234444444322 456678
Q ss_pred EEEecCCCCCccch------------------hHHHHHHHHhh-----------------------cCCCcEEEEeccc-
Q 003873 476 LIMDEVDGMSAGDR------------------GGIADLIASIK-----------------------ISKIPIICICNDR- 513 (790)
Q Consensus 476 LIIDEiD~L~~~~~------------------~~l~~Ll~~i~-----------------------~s~~pII~I~nd~- 513 (790)
++|+|-+-....-- ..+..+++.++ ..+.-||++.+..
T Consensus 93 fll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rvr~nLHivl~~sp~~ 172 (268)
T PF12780_consen 93 FLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERVRKNLHIVLCMSPVG 172 (268)
T ss_dssp EEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHHCCCEEEEEEESTTT
T ss_pred EEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHHHhheeEEEEECCCC
Confidence 88888665432100 11111111110 1223355443321
Q ss_pred --c---hhhhhhccccccccccCCCCHHHHHHHHHHHH
Q 003873 514 --Y---SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIA 546 (790)
Q Consensus 514 --~---~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~ 546 (790)
+ ....|.|.++|.+.-|.+.+.+.+..+-...+
T Consensus 173 ~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l 210 (268)
T PF12780_consen 173 PNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFL 210 (268)
T ss_dssp TCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHC
T ss_pred chHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHH
Confidence 1 23347888889888899999888877766554
No 368
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.84 E-value=0.0033 Score=66.57 Aligned_cols=95 Identities=21% Similarity=0.306 Sum_probs=58.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHH------HhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQ------MLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRS 469 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAk------elg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~ 469 (790)
....+||.||.|.|||.+|+.+-. ++.-.++|+||...|+... +...+| .++..+..+.........
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~a--msalfg-----hvkgaftga~~~r~gllr 279 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTA--MSALFG-----HVKGAFTGARESREGLLR 279 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchH--HHHHHh-----hhccccccchhhhhhhhc
Confidence 456799999999999999988853 3456899999998887531 111111 112122111110000011
Q ss_pred CCCceEEEEecCCCCCccchhHHHHHHH
Q 003873 470 KHPKTVLIMDEVDGMSAGDRGGIADLIA 497 (790)
Q Consensus 470 ~~~~~VLIIDEiD~L~~~~~~~l~~Ll~ 497 (790)
.....+||+|||.-|....+..+...|+
T Consensus 280 sadggmlfldeigelgadeqamllkaie 307 (531)
T COG4650 280 SADGGMLFLDEIGELGADEQAMLLKAIE 307 (531)
T ss_pred cCCCceEehHhhhhcCccHHHHHHHHHH
Confidence 2345699999999998877766666665
No 369
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.83 E-value=0.0067 Score=62.19 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=30.7
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
+....++|+||||+|||+++..++... |..+++++...
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 346789999999999999998887544 66788887754
No 370
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.82 E-value=0.0072 Score=60.41 Aligned_cols=104 Identities=14% Similarity=0.213 Sum_probs=61.3
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCch-hhhhhcc---cC-----CCchhHHHHHHHHhhhhccccCCC
Q 003873 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA-DAKISKG---IG-----GSNANSIKELVSNEALSANMDRSK 470 (790)
Q Consensus 400 lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~-~~~i~~~---~g-----~s~~~~i~e~l~~a~~~~~~~~~~ 470 (790)
+||+|++|+|||++|..++...+.+++++..+...+.. ...+... -. ......+.+.+.. .
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~----------~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKE----------L 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHh----------c
Confidence 68999999999999999998877778787544322211 1111110 00 0011223333322 1
Q ss_pred CCceEEEEecCCCCCc-----cc-------hhHHHHHHHHhhcCCCcEEEEeccc
Q 003873 471 HPKTVLIMDEVDGMSA-----GD-------RGGIADLIASIKISKIPIICICNDR 513 (790)
Q Consensus 471 ~~~~VLIIDEiD~L~~-----~~-------~~~l~~Ll~~i~~s~~pII~I~nd~ 513 (790)
....+|+||-+..+.. +. ...+..+++.++....++|+++|+-
T Consensus 72 ~~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsnEv 126 (169)
T cd00544 72 DPGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNEV 126 (169)
T ss_pred CCCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEECCc
Confidence 1345899998765432 11 1344557777777888899998864
No 371
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.82 E-value=0.03 Score=58.97 Aligned_cols=143 Identities=15% Similarity=0.200 Sum_probs=67.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhC--CcEEEEeCCCCCCchhhhh-hcccCC-CchhHHHHHHH-------Hhhhhcc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLG--FQAIEVNASDSRGKADAKI-SKGIGG-SNANSIKELVS-------NEALSAN 465 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg--~~iiEinaSd~rsk~~~~i-~~~~g~-s~~~~i~e~l~-------~a~~~~~ 465 (790)
+-.+++.|++|+|||+++..+...+. +..+.+-+..........+ ...+.. ...+.+...+. ......
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~- 91 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS- 91 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh-
Confidence 34688999999999999988887663 3333333222211111111 011111 11222222221 111100
Q ss_pred ccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccc-cccCCCCHHHHHHHHH
Q 003873 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSD-LRFRKPRKQEIAKRLM 543 (790)
Q Consensus 466 ~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~-I~F~~pt~~ei~~iL~ 543 (790)
.........+||||++..-.. ....+..++...+..++-+|++|-. +....+.++.-+.. +-|+ .+..++..++.
T Consensus 92 ~~~k~~~~~LiIlDD~~~~~~-k~~~l~~~~~~gRH~~is~i~l~Q~-~~~lp~~iR~n~~y~i~~~-~s~~dl~~i~~ 167 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDKKL-KSKILRQFFNNGRHYNISIIFLSQS-YFHLPPNIRSNIDYFIIFN-NSKRDLENIYR 167 (241)
T ss_pred cccCCCCCeEEEEeCCCCchh-hhHHHHHHHhcccccceEEEEEeee-cccCCHHHhhcceEEEEec-CcHHHHHHHHH
Confidence 011124468999999853111 1233556665555666677777653 22222334433322 3343 56666554444
No 372
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.80 E-value=0.0032 Score=65.30 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQ 419 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAk 419 (790)
.+.++|+||.|+||||+.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999999983
No 373
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.80 E-value=0.0012 Score=64.00 Aligned_cols=31 Identities=32% Similarity=0.624 Sum_probs=27.8
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
.++|+|+||+||||+++.||+.+|+.++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3799999999999999999999999887654
No 374
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.78 E-value=0.026 Score=67.82 Aligned_cols=185 Identities=19% Similarity=0.207 Sum_probs=105.7
Q ss_pred CCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh--CCcEEEE
Q 003873 351 RPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML--GFQAIEV 428 (790)
Q Consensus 351 ~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel--g~~iiEi 428 (790)
+|......|..+..+..|... ...+.+||+-|.|.||||++-.++... +..+.-+
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~-----------------------~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wl 70 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA-----------------------NDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWL 70 (894)
T ss_pred CCCCcccccccHHHHHHHhcC-----------------------CCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEe
Confidence 455667777777776665321 346899999999999999999998633 4555555
Q ss_pred eCCCCCCchh----hhh---hcccCC-----------Cc----hhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc
Q 003873 429 NASDSRGKAD----AKI---SKGIGG-----------SN----ANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA 486 (790)
Q Consensus 429 naSd~rsk~~----~~i---~~~~g~-----------s~----~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~ 486 (790)
+..+..+... ..+ .....+ .. ..-+..++.... .-..+.+|||||.|.+..
T Consensus 71 slde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela-------~~~~pl~LVlDDyHli~~ 143 (894)
T COG2909 71 SLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELA-------SYEGPLYLVLDDYHLISD 143 (894)
T ss_pred ecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHH-------hhcCceEEEeccccccCc
Confidence 5443322211 111 111100 00 112223333221 123457999999999987
Q ss_pred cc-hhHHHHHHHHhhcCCCcEEEEecccchhhhhhcccccccccc----CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003873 487 GD-RGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRF----RKPRKQEIAKRLMQIANAEGLEVNEIALEEL 561 (790)
Q Consensus 487 ~~-~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F----~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~I 561 (790)
.. ..++..+++.. ..+..+|+++-.+..-.+..++-|-..+.+ -..+.++....|... -+..++...+..|
T Consensus 144 ~~l~~~l~fLl~~~-P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~---~~l~Ld~~~~~~L 219 (894)
T COG2909 144 PALHEALRFLLKHA-PENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDR---GSLPLDAADLKAL 219 (894)
T ss_pred ccHHHHHHHHHHhC-CCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHc---CCCCCChHHHHHH
Confidence 54 35666677642 334445555544333233444433222221 234567777666542 3488999999999
Q ss_pred HHHccCCH
Q 003873 562 ADRVNGDI 569 (790)
Q Consensus 562 a~~s~GDi 569 (790)
.+.+.|=+
T Consensus 220 ~~~teGW~ 227 (894)
T COG2909 220 YDRTEGWA 227 (894)
T ss_pred HhhcccHH
Confidence 99998854
No 375
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.78 E-value=0.0088 Score=59.76 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.3
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
..++|.||+|+||||+++.|+..++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999998764
No 376
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.76 E-value=0.0035 Score=64.13 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=20.0
Q ss_pred cEEEEECCCCCChHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVC 418 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lA 418 (790)
+.++|+||.|+||||+.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 579999999999999999998
No 377
>PRK13949 shikimate kinase; Provisional
Probab=96.76 E-value=0.0013 Score=65.68 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=29.0
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
+.++|.||||+||||+++.||+.+++.++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999887754
No 378
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.75 E-value=0.0082 Score=69.23 Aligned_cols=107 Identities=19% Similarity=0.307 Sum_probs=61.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCC-------CchhHHHHHHHHhhhhcc
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGG-------SNANSIKELVSNEALSAN 465 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~-------s~~~~i~e~l~~a~~~~~ 465 (790)
....+||+|+||+||||++..++..+ +..++++...+.......... .++- .....+..++....
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~-rlg~~~~~l~~~~e~~~~~I~~~i~---- 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAI-RLGLPEPNLYVLSETNWEQICANIE---- 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHH-HcCCChHHeEEcCCCCHHHHHHHHH----
Confidence 45689999999999999999887655 456777766443211100000 0110 00111222222211
Q ss_pred ccCCCCCceEEEEecCCCCCccc-----------hhHHHHHHHHhhcCCCcEEEEec
Q 003873 466 MDRSKHPKTVLIMDEVDGMSAGD-----------RGGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 466 ~~~~~~~~~VLIIDEiD~L~~~~-----------~~~l~~Ll~~i~~s~~pII~I~n 511 (790)
.....+||||.+..+...+ +..+..|....+...+++|+++.
T Consensus 168 ----~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~h 220 (454)
T TIGR00416 168 ----EENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGH 220 (454)
T ss_pred ----hcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 2345799999998875421 12233455666778888888854
No 379
>PRK13808 adenylate kinase; Provisional
Probab=96.74 E-value=0.015 Score=64.04 Aligned_cols=30 Identities=37% Similarity=0.553 Sum_probs=26.6
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.|||.||||+||||+++.||+.+|+.++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 388999999999999999999999866654
No 380
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.72 E-value=0.013 Score=61.53 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=28.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh----CCcEEEEeCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML----GFQAIEVNASD 432 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel----g~~iiEinaSd 432 (790)
....++|.|+||+|||+++..++..+ |..+++++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 45689999999999999987765443 77888877543
No 381
>PLN02674 adenylate kinase
Probab=96.72 E-value=0.025 Score=59.84 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=27.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
...++|.||||+||||.++.||+.+|+..+..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 46789999999999999999999999766543
No 382
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.72 E-value=0.041 Score=60.37 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
..+++|+||+|+||||++++++..+.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC
Confidence 47999999999999999999998773
No 383
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.72 E-value=0.01 Score=65.17 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=60.8
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCC-------CchhHHHHHHHHhhhhc
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGG-------SNANSIKELVSNEALSA 464 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~-------s~~~~i~e~l~~a~~~~ 464 (790)
+..+.++|+||||+||||++..++.+. |..++++++....... ....+|- .......+.+.......
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 345789999999999999987765544 6677777664321110 0000110 00111222222211100
Q ss_pred cccCCCCCceEEEEecCCCCCcc---------c------h---hHHHHHHHHhhcCCCcEEEEec
Q 003873 465 NMDRSKHPKTVLIMDEVDGMSAG---------D------R---GGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 465 ~~~~~~~~~~VLIIDEiD~L~~~---------~------~---~~l~~Ll~~i~~s~~pII~I~n 511 (790)
......+||||-+..+... . + ..+..|...++..++++|+|..
T Consensus 130 ----~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 130 ----RSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ----hccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 1234579999998877631 0 1 2344566667788888888743
No 384
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.72 E-value=0.0068 Score=62.48 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.2
Q ss_pred CcEEEEECCCCCChHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVC 418 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lA 418 (790)
.+.++|+||.|+||||+++.++
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999987
No 385
>PLN02748 tRNA dimethylallyltransferase
Probab=96.71 E-value=0.003 Score=72.52 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=29.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
..+.++|.||+|+|||+|+..||..+++.+|..+
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~D 54 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINAD 54 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCc
Confidence 4568999999999999999999999997766543
No 386
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.71 E-value=0.011 Score=61.91 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=30.0
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
+....++|+|+||+|||+++..++.+. |..++++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 356789999999999999999986543 66777776643
No 387
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.71 E-value=0.0063 Score=72.50 Aligned_cols=110 Identities=25% Similarity=0.386 Sum_probs=56.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---C-C--cEEEEeCCCCCCchhhhhhcccCC----------------CchhHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---G-F--QAIEVNASDSRGKADAKISKGIGG----------------SNANSIK 454 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g-~--~iiEinaSd~rsk~~~~i~~~~g~----------------s~~~~i~ 454 (790)
.+..+|+|+|||||||++..+...+ + . ..+.+-+.. ++....+.+.++. .....|.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APT--gkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiH 244 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPT--GKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLH 244 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCc--HHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHH
Confidence 3689999999999999998776554 1 1 123333322 2211122211110 0122333
Q ss_pred HHHHHhhhhc--cc-cCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 455 ELVSNEALSA--NM-DRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 455 e~l~~a~~~~--~~-~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
.++....... .. ....-...||||||+-++.- ..+..|++.+. ....+|+++..
T Consensus 245 rlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~---~lm~~ll~al~-~~~rlIlvGD~ 301 (615)
T PRK10875 245 RLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDL---PMMARLIDALP-PHARVIFLGDR 301 (615)
T ss_pred HHhCcCCCccchhhccccCCCCCeEEEChHhcccH---HHHHHHHHhcc-cCCEEEEecch
Confidence 3433211000 00 00112346999999987753 44556666554 45678888764
No 388
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.70 E-value=0.011 Score=58.50 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=56.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCC--cEEEEeCCCCCCchh-hhhhccc---CCCchhHHHH-HHHHhhhhccccC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGF--QAIEVNASDSRGKAD-AKISKGI---GGSNANSIKE-LVSNEALSANMDR 468 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~--~iiEinaSd~rsk~~-~~i~~~~---g~s~~~~i~e-~l~~a~~~~~~~~ 468 (790)
....+.|.||+|+||||++++++..+.. --+.++..+...... ......+ ..-.....+. .+..+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral------- 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARAL------- 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHH-------
Confidence 4568999999999999999999976521 113333211110000 0000000 0000111111 111111
Q ss_pred CCCCceEEEEecCC-CCCccchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 469 SKHPKTVLIMDEVD-GMSAGDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 469 ~~~~~~VLIIDEiD-~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
...+.|||+||.- +|....+..+..++..+......||+++.+
T Consensus 98 -~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 141 (163)
T cd03216 98 -ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141 (163)
T ss_pred -hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 2345799999976 444455666767776554445566666665
No 389
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.70 E-value=0.0036 Score=70.23 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=24.5
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
.+..++|+||.|||||+++++|...+..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 3578999999999999999999888743
No 390
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.70 E-value=0.012 Score=73.33 Aligned_cols=105 Identities=14% Similarity=0.242 Sum_probs=62.2
Q ss_pred cEEEEECCCCCChHHHHHHHHHH---hCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCce
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQM---LGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAke---lg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~ 474 (790)
..++|+|++||||||++..+... .|+.++-+-++. +....+....| .....|..++...... ........
T Consensus 363 ~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTG---kAA~~L~e~tG-i~a~TI~sll~~~~~~---~~~l~~~~ 435 (988)
T PRK13889 363 DLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSG---IAAENLEGGSG-IASRTIASLEHGWGQG---RDLLTSRD 435 (988)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcH---HHHHHHhhccC-cchhhHHHHHhhhccc---ccccccCc
Confidence 46789999999999998877544 477776654432 22122322222 1223344444221100 11123457
Q ss_pred EEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 475 VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 475 VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
||||||+-.+... .+..|+.........||++.-.
T Consensus 436 vlIVDEASMv~~~---~m~~LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 436 VLVIDEAGMVGTR---QLERVLSHAADAGAKVVLVGDP 470 (988)
T ss_pred EEEEECcccCCHH---HHHHHHHhhhhCCCEEEEECCH
Confidence 9999999988654 3456666556667888888864
No 391
>PRK06762 hypothetical protein; Provisional
Probab=96.69 E-value=0.002 Score=63.61 Aligned_cols=34 Identities=35% Similarity=0.454 Sum_probs=28.3
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEina 430 (790)
+..++|+|+||+||||+|+.|++.++..++.++.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~ 35 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ 35 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH
Confidence 4678999999999999999999999655555543
No 392
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.68 E-value=0.0016 Score=65.28 Aligned_cols=29 Identities=28% Similarity=0.577 Sum_probs=25.7
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 400 lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
++|.||||+||||+++.||+.+|+.++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999999765543
No 393
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.68 E-value=0.011 Score=65.01 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=29.7
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
+..+.++|+||||+||||++..+|.+. |..++++++..
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 345789999999999999998776443 67778887643
No 394
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.012 Score=65.74 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=54.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcc---cC-----CCchhHHHHHHHHhhhhc
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKG---IG-----GSNANSIKELVSNEALSA 464 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~---~g-----~s~~~~i~e~l~~a~~~~ 464 (790)
..+.++|.||.|+||||++..+|..+ |..+..+++...|......+..+ ++ ......+.+.+.....
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~-- 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY-- 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh--
Confidence 46789999999999999999998766 66777777766665322122111 11 1122334443433210
Q ss_pred cccCCCCCceEEEEecCCCCCccchhHHHHHHH
Q 003873 465 NMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIA 497 (790)
Q Consensus 465 ~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~ 497 (790)
.....+||||=+..... +...+.++-.
T Consensus 283 -----~~~~D~VLIDTAGr~~~-d~~~l~EL~~ 309 (407)
T PRK12726 283 -----VNCVDHILIDTVGRNYL-AEESVSEISA 309 (407)
T ss_pred -----cCCCCEEEEECCCCCcc-CHHHHHHHHH
Confidence 12346899998876653 3333444333
No 395
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.68 E-value=0.011 Score=60.57 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCChHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVC 418 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lA 418 (790)
...++|+||.|+||||+++.++
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHH
Confidence 3689999999999999999998
No 396
>PRK07261 topology modulation protein; Provisional
Probab=96.68 E-value=0.0017 Score=64.96 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=27.5
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
-++|.|+||+||||+|+.|++.+++.++.++
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecC
Confidence 4899999999999999999999998877654
No 397
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.013 Score=58.87 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=23.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
...++|+||+|+||||+++.|-+..++
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~~l 30 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDDKL 30 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhcCe
Confidence 468999999999999999999888743
No 398
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.66 E-value=0.013 Score=59.02 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
....+.|.||+|+|||||.+++...
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4578999999999999999998643
No 399
>PRK14531 adenylate kinase; Provisional
Probab=96.64 E-value=0.002 Score=64.98 Aligned_cols=31 Identities=29% Similarity=0.608 Sum_probs=27.4
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
+.++|+||||+||||+++.||+.+|+..+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4699999999999999999999999876553
No 400
>PRK06217 hypothetical protein; Validated
Probab=96.64 E-value=0.0018 Score=65.28 Aligned_cols=31 Identities=19% Similarity=0.405 Sum_probs=28.4
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
.|+|.|++|+||||+++.|++.+|+.+++++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5899999999999999999999999887765
No 401
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0033 Score=65.81 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..-.+-|.||+||||||+.+++|-..
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999665
No 402
>PRK06696 uridine kinase; Validated
Probab=96.63 E-value=0.0047 Score=64.34 Aligned_cols=55 Identities=24% Similarity=0.336 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 361 NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 361 ~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
...++++|-.++..- ....+..|.|+|++|+||||+|+.|+..+ |..++.+...+
T Consensus 3 ~~~~~~~la~~~~~~-----------------~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Dd 60 (223)
T PRK06696 3 RKQLIKELAEHILTL-----------------NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDD 60 (223)
T ss_pred HHHHHHHHHHHHHHh-----------------CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccc
Confidence 345677777777651 01245789999999999999999999999 66666655433
No 403
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.63 E-value=0.0018 Score=62.69 Aligned_cols=28 Identities=32% Similarity=0.538 Sum_probs=25.1
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 400 AILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 400 lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
++|+|+||+||||+|+.+++.+++.++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 7899999999999999999998876654
No 404
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.63 E-value=0.014 Score=58.52 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+||||++++++..+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999765
No 405
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.63 E-value=0.016 Score=58.43 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.+.++|+||+|+||+|++..|++..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3689999999999999999999986
No 406
>PRK14530 adenylate kinase; Provisional
Probab=96.62 E-value=0.0022 Score=66.37 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=27.7
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
+.++|.||||+||||+++.||+.+|+.++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4689999999999999999999999877743
No 407
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.60 E-value=0.0019 Score=61.91 Aligned_cols=30 Identities=33% Similarity=0.625 Sum_probs=27.3
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 400 lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
++|+|+||+||||+|+.||+.+|+.++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 789999999999999999999998877664
No 408
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.59 E-value=0.014 Score=60.30 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=29.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNAS 431 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaS 431 (790)
....++|+|+||+|||+++..+|.+. |..+++++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45789999999999999999988765 5677777654
No 409
>PRK05973 replicative DNA helicase; Provisional
Probab=96.59 E-value=0.0097 Score=62.65 Aligned_cols=109 Identities=15% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhc-c-----------cCCCchhHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISK-G-----------IGGSNANSIKELVSNE 460 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~-~-----------~g~s~~~~i~e~l~~a 460 (790)
....+||.|+||+|||+++..++... |..++++............+.. + +...........+...
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~~~ii~~l 142 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRALGADRAQFADLFEFDTSDAICADYIIARL 142 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHcCCChHHhccceEeecCCCCCHHHHHHHH
Confidence 45689999999999999998776544 7777777654322110000000 0 0000000011112111
Q ss_pred hhhccccCCCCCceEEEEecCCCCCcc--ch---hHHHHHHHHhhcCCCcEEEEec
Q 003873 461 ALSANMDRSKHPKTVLIMDEVDGMSAG--DR---GGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 461 ~~~~~~~~~~~~~~VLIIDEiD~L~~~--~~---~~l~~Ll~~i~~s~~pII~I~n 511 (790)
.. .....+||||=+..+... .. ..+..|....+...+|+|+|+.
T Consensus 143 ~~-------~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQ 191 (237)
T PRK05973 143 AS-------APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQ 191 (237)
T ss_pred HH-------hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEec
Confidence 10 123469999998877432 11 2233355566788999999874
No 410
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.59 E-value=0.0019 Score=64.50 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=26.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
.+.++|+|+||+||||+|+.|++.++..++.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~ 32 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLH 32 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccc
Confidence 3689999999999999999999998765543
No 411
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.58 E-value=0.0023 Score=64.10 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=27.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.+.++|.||||+||||+++.|++.+|+..+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 36899999999999999999999999776554
No 412
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.57 E-value=0.0082 Score=64.13 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=29.4
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHh----CCcEEEEeCCC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQML----GFQAIEVNASD 432 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkel----g~~iiEinaSd 432 (790)
.....++|.||||+|||+++..+|..+ |..++++...+
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 345689999999999999998776553 77777776543
No 413
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.57 E-value=0.002 Score=64.92 Aligned_cols=29 Identities=34% Similarity=0.579 Sum_probs=26.4
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 400 lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
++|.||||+||||+++.||+.+|+.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 79999999999999999999999877654
No 414
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.56 E-value=0.0043 Score=65.68 Aligned_cols=31 Identities=35% Similarity=0.591 Sum_probs=26.4
Q ss_pred EEEECCCCCChHHHHHHHHHHh---CCcEEEEeC
Q 003873 400 AILSGSPGMGKTTAAKLVCQML---GFQAIEVNA 430 (790)
Q Consensus 400 lLLsGPpGtGKTTlA~~lAkel---g~~iiEina 430 (790)
++|+|+||+||||+|+.+++.+ +++++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 7899999999999999999987 566666643
No 415
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.56 E-value=0.0046 Score=61.67 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+||||++++++..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999999875
No 416
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.55 E-value=0.012 Score=61.94 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=27.1
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHH---hCCcEEEEeCC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQM---LGFQAIEVNAS 431 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAke---lg~~iiEinaS 431 (790)
+....+||+||||+|||+++..++.+ -|-.++++...
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 34678999999999999999765543 26566666543
No 417
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.55 E-value=0.016 Score=58.43 Aligned_cols=104 Identities=20% Similarity=0.139 Sum_probs=53.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCc--EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCc
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQ--AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK 473 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~--iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~ 473 (790)
....+.|.||.|+|||||+++++..+... -+.++.... + .+.+...- +...+..+.-+..- ...+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i-~----~~~q~~~L--SgGq~qrv~laral------~~~p 90 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP-V----YKPQYIDL--SGGELQRVAIAAAL------LRNA 90 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEE-E----EEcccCCC--CHHHHHHHHHHHHH------hcCC
Confidence 45689999999999999999999765211 122221100 0 00000000 00111111111100 2345
Q ss_pred eEEEEecCCC-CCccchhHHHHHHHHhhcC-CCcEEEEecc
Q 003873 474 TVLIMDEVDG-MSAGDRGGIADLIASIKIS-KIPIICICND 512 (790)
Q Consensus 474 ~VLIIDEiD~-L~~~~~~~l~~Ll~~i~~s-~~pII~I~nd 512 (790)
.++++||.-. |....+..+..++..+... ...||+++.+
T Consensus 91 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 131 (177)
T cd03222 91 TFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131 (177)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 7999999864 4445555666666554333 3567777664
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.55 E-value=0.017 Score=58.48 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=18.1
Q ss_pred EEEECCCCCChHHHHHHHH
Q 003873 400 AILSGSPGMGKTTAAKLVC 418 (790)
Q Consensus 400 lLLsGPpGtGKTTlA~~lA 418 (790)
++|+||.|.||||+++.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999999998
No 419
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.019 Score=66.69 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=28.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh-----CCcEEEEeCCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML-----GFQAIEVNASDSR 434 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel-----g~~iiEinaSd~r 434 (790)
....++|+||+|+||||++..||..+ +..+..++....|
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 35789999999999999998888654 2455555544334
No 420
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.018 Score=65.15 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=29.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh----CCcEEEEeCCCCCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML----GFQAIEVNASDSRG 435 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel----g~~iiEinaSd~rs 435 (790)
...++|+||+|+||||++..||..+ |..+.-+++-..|.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 4678999999999999999998654 55566565544443
No 421
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.53 E-value=0.028 Score=64.28 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=27.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
.+..++++|++|+||||++..||..+|+.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 46899999999999999999999999986
No 422
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.51 E-value=0.0084 Score=60.67 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.5
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
...++|+||+|+||||++++++..+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46899999999999999999998773
No 423
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.51 E-value=0.0069 Score=59.76 Aligned_cols=40 Identities=13% Similarity=0.289 Sum_probs=25.3
Q ss_pred ceEEEEecCCCCCc-cchhHHHHHHHHhhcCCCcEEEEeccc
Q 003873 473 KTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDR 513 (790)
Q Consensus 473 ~~VLIIDEiD~L~~-~~~~~l~~Ll~~i~~s~~pII~I~nd~ 513 (790)
..+|||||+|.+.. .....+..++..+ .....+|+++.+.
T Consensus 130 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~v~~saT~ 170 (201)
T smart00487 130 VDLVILDEAHRLLDGGFGDQLEKLLKLL-PKNVQLLLLSATP 170 (201)
T ss_pred CCEEEEECHHHHhcCCcHHHHHHHHHhC-CccceEEEEecCC
Confidence 45899999999987 4444455555544 2345566665543
No 424
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.51 E-value=0.0086 Score=69.65 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=40.9
Q ss_pred cCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 350 YRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 350 Y~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
..+.++++|-..+..++.|+..+.. ....+|++||+|+||||+++++..+++
T Consensus 216 ~~~~~l~~Lg~~~~~~~~l~~~~~~---------------------~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 216 AVRLDLETLGMSPELLSRFERLIRR---------------------PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred cCCCCHHHcCCCHHHHHHHHHHHhc---------------------CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 3456788887788888887776654 235789999999999999998887774
No 425
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.50 E-value=0.0066 Score=68.16 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
....++|.||+|+||||+++.+++.+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 456799999999999999999999863
No 426
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.50 E-value=0.015 Score=57.43 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..-.++|+||+||||||+.+.+|...
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34578999999999999999999877
No 427
>PRK10867 signal recognition particle protein; Provisional
Probab=96.50 E-value=0.068 Score=61.22 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=32.1
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh----CCcEEEEeCCCCCCc
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML----GFQAIEVNASDSRGK 436 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel----g~~iiEinaSd~rsk 436 (790)
.+..++|+||+|+||||++..+|..+ |..+.-+++-..|..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 46789999999999999887777654 677777777666653
No 428
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.50 E-value=0.014 Score=59.95 Aligned_cols=93 Identities=20% Similarity=0.359 Sum_probs=55.4
Q ss_pred HHHHHH-HHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhh
Q 003873 363 QLVKQL-HTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKI 441 (790)
Q Consensus 363 ~~i~~L-~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i 441 (790)
.....+ +.||..+-...+..+- ....+++|.|+-|+||||.++.|+.++-.+. + .+...
T Consensus 27 ~~~~~~~~~wl~~~Var~~~pg~----------k~d~~lvl~G~QG~GKStf~~~L~~~~~~d~--~--~~~~~------ 86 (198)
T PF05272_consen 27 EYNRYVFRKWLVGAVARAYEPGC----------KNDTVLVLVGKQGIGKSTFFRKLGPEYFSDS--I--NDFDD------ 86 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC----------cCceeeeEecCCcccHHHHHHHHhHHhccCc--c--ccCCC------
Confidence 334444 6777765443332221 2346899999999999999999976621111 0 11100
Q ss_pred hcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHH
Q 003873 442 SKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIA 497 (790)
Q Consensus 442 ~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~ 497 (790)
.+....+.. .-||.|||++.+...+.+.+..++.
T Consensus 87 ---------kd~~~~l~~-------------~~iveldEl~~~~k~~~~~lK~~iT 120 (198)
T PF05272_consen 87 ---------KDFLEQLQG-------------KWIVELDELDGLSKKDVEALKSFIT 120 (198)
T ss_pred ---------cHHHHHHHH-------------hHheeHHHHhhcchhhHHHHHHHhc
Confidence 111122222 1378999999999877777777774
No 429
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.48 E-value=0.0022 Score=63.09 Aligned_cols=28 Identities=39% Similarity=0.545 Sum_probs=24.5
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 400 AILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 400 lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
++|+||+|+||||+++.+++.+++.++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999866543
No 430
>PRK06547 hypothetical protein; Provisional
Probab=96.48 E-value=0.003 Score=63.35 Aligned_cols=34 Identities=29% Similarity=0.497 Sum_probs=29.5
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
....++|+|++|+||||+++.|++.+++.++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 4678999999999999999999999988776543
No 431
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.47 E-value=0.011 Score=61.54 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.2
Q ss_pred cEEEEECCCCCChHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQ 419 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAk 419 (790)
..++|+||.|+||||+.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6899999999999999999863
No 432
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.47 E-value=0.022 Score=63.50 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
...+||+||+|+||||++++++..+.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 46899999999999999999998774
No 433
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.017 Score=57.47 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+||||++++++..+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45789999999999999999999876
No 434
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.46 E-value=0.011 Score=63.95 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=30.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh----C-CcEEEEeCCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML----G-FQAIEVNASDSR 434 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel----g-~~iiEinaSd~r 434 (790)
.++.++|+||+|+||||++..||..+ | ..+..+++...|
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 35789999999999999999888765 4 677777765544
No 435
>PRK13948 shikimate kinase; Provisional
Probab=96.46 E-value=0.0034 Score=63.50 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=31.2
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
.+..++|.|.+|+||||+++.||+.+|+.++..+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 4688999999999999999999999999998765
No 436
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.45 E-value=0.0024 Score=63.54 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=29.6
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
+.++|.|++|+||||+.+.||+.|+++++..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57999999999999999999999999998764
No 437
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.44 E-value=0.02 Score=71.96 Aligned_cols=107 Identities=19% Similarity=0.284 Sum_probs=64.4
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH---hCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM---LGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK 473 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke---lg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~ 473 (790)
.+.++|.|++||||||+++.+... .|+.++-+-++ ++....+....|. ....|..++...... .......
T Consensus 397 ~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApT---gkAA~~L~e~~Gi-~a~TIas~ll~~~~~---~~~l~~~ 469 (1102)
T PRK13826 397 ARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALA---GKAAEGLEKEAGI-QSRTLSSWELRWNQG---RDQLDNK 469 (1102)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc---HHHHHHHHHhhCC-CeeeHHHHHhhhccC---ccCCCCC
Confidence 468999999999999999998764 47777766443 2222233322221 122344443211000 0112345
Q ss_pred eEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEeccc
Q 003873 474 TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDR 513 (790)
Q Consensus 474 ~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~ 513 (790)
.||||||+-.+... .+..|+..+......||+++-..
T Consensus 470 ~vlVIDEAsMv~~~---~m~~Ll~~~~~~garvVLVGD~~ 506 (1102)
T PRK13826 470 TVFVLDEAGMVASR---QMALFVEAVTRAGAKLVLVGDPE 506 (1102)
T ss_pred cEEEEECcccCCHH---HHHHHHHHHHhcCCEEEEECCHH
Confidence 79999999988653 34456666666778899888643
No 438
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=96.44 E-value=0.0019 Score=71.57 Aligned_cols=159 Identities=17% Similarity=0.291 Sum_probs=76.1
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
..+++-..| +|.|++.++..|.-.|-. +..............-++||.|.||+|||.+.+.+++...
T Consensus 16 ~~l~~s~aP----~i~g~~~iK~aill~L~~--------~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~p- 82 (331)
T PF00493_consen 16 DRLANSIAP----SIYGHEDIKKAILLQLFG--------GVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAP- 82 (331)
T ss_dssp HCCHHHCSS----TTTT-HHHHHHHCCCCTT----------SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-S-
T ss_pred HHHHHHhCC----cCcCcHHHHHHHHHHHHh--------ccccccccccccccccceeeccchhhhHHHHHHHHHhhCC-
Confidence 356667777 677888776655322222 1111000000112346899999999999999997765433
Q ss_pred cEEEEeCCCCCCc-hhhhhhcc-cCCCchhHHH-HHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHh-
Q 003873 424 QAIEVNASDSRGK-ADAKISKG-IGGSNANSIK-ELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI- 499 (790)
Q Consensus 424 ~iiEinaSd~rsk-~~~~i~~~-~g~s~~~~i~-e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i- 499 (790)
..++.+.....+. ....+... .++. ..+. ..+- ...+.|++|||+|.|...++..+++.++.-
T Consensus 83 r~v~~~g~~~s~~gLta~~~~d~~~~~--~~leaGalv-----------lad~GiccIDe~dk~~~~~~~~l~eaMEqq~ 149 (331)
T PF00493_consen 83 RSVYTSGKGSSAAGLTASVSRDPVTGE--WVLEAGALV-----------LADGGICCIDEFDKMKEDDRDALHEAMEQQT 149 (331)
T ss_dssp SEEEEECCGSTCCCCCEEECCCGGTSS--ECEEE-HHH-----------HCTTSEEEECTTTT--CHHHHHHHHHHHCSC
T ss_pred ceEEECCCCcccCCccceeccccccce--eEEeCCchh-----------cccCceeeecccccccchHHHHHHHHHHcCe
Confidence 3344433221110 00000000 0000 0000 0000 123469999999999999999999988742
Q ss_pred -----------hcCCCcEEEEecccch------------hhhhhcccccccc
Q 003873 500 -----------KISKIPIICICNDRYS------------QKLKSLVNYCSDL 528 (790)
Q Consensus 500 -----------~~s~~pII~I~nd~~~------------~~l~~L~sR~~~I 528 (790)
-.+++.|+..||.... ..-.+|++|+..|
T Consensus 150 isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLi 201 (331)
T PF00493_consen 150 ISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLI 201 (331)
T ss_dssp EEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEE
T ss_pred eccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEE
Confidence 1456778888885431 1125788887654
No 439
>PRK13946 shikimate kinase; Provisional
Probab=96.44 E-value=0.0028 Score=63.98 Aligned_cols=33 Identities=27% Similarity=0.587 Sum_probs=30.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
.+.++|.|++|+||||+++.||+.+|+.++..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 478999999999999999999999999987654
No 440
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.43 E-value=0.0033 Score=62.32 Aligned_cols=32 Identities=31% Similarity=0.595 Sum_probs=28.7
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
..++|+|++|+||||+++.||+.+|+.++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 46899999999999999999999999887654
No 441
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.42 E-value=0.024 Score=54.98 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+||||++++++..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45789999999999999999999765
No 442
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.42 E-value=0.0029 Score=64.92 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=17.6
Q ss_pred EEEEECCCCCChHHHHHHHHHHh
Q 003873 399 AAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..+|.||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 59999999999998776666655
No 443
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.41 E-value=0.017 Score=61.95 Aligned_cols=168 Identities=20% Similarity=0.222 Sum_probs=91.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchh--hhhhcccCCCchhHHHHHHHHhhhhccccCCCCCce
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKAD--AKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~--~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~ 474 (790)
.....++|-+|.|||+.++-+|+.... .+.+.++...+... ..++..........+.+++....... .....
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s~p~-~~l~~~~p~~~a~~~i~~i~~~~~~~~~~~~~d~~~~~~~~l-----~~~~~ 167 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPSNPN-ALLIEADPSYTALVLILIICAAAFGATDGTINDLTERLMIRL-----RDTVR 167 (297)
T ss_pred CceEEEeccccchhHHHHHhhcccCcc-ceeecCChhhHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH-----ccCcc
Confidence 358999999999999999999987643 33344443333221 11222222222223333333322111 34456
Q ss_pred EEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhh-------hcccccc---ccccCCCCHHHHHHHHHH
Q 003873 475 VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLK-------SLVNYCS---DLRFRKPRKQEIAKRLMQ 544 (790)
Q Consensus 475 VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~-------~L~sR~~---~I~F~~pt~~ei~~iL~~ 544 (790)
.|++||+++|.......+..+ ...+.+-++++.++.....++ .+.+|.. .+...-++..++..+...
T Consensus 168 ~iivDEA~~L~~~ale~lr~i---~d~~Gi~~vLvG~prL~~~l~~~~~~~~rl~srv~v~~~~~~~~~d~d~~~~~~~~ 244 (297)
T COG2842 168 LIIVDEADRLPYRALEELRRI---HDKTGIGVVLVGMPRLFKVLRRPEDELSRLYSRVRVGKLLGEKFPDADELAEIAAL 244 (297)
T ss_pred eeeeehhhccChHHHHHHHHH---HHhhCceEEEecChHHHhccccchHHHHHHHHHhhhHhhhhhhhhhhHHHHHHHHh
Confidence 899999999987554444443 356788899999976433331 1112211 111122222333333332
Q ss_pred HHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 003873 545 IANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577 (790)
Q Consensus 545 I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq 577 (790)
++. ...+..+..+.....|.+|.+-..|.
T Consensus 245 ~l~----~~~~~~v~~~~~~~~g~~~~L~~~l~ 273 (297)
T COG2842 245 VLP----TEDELVLMQVIKETEGNIRRLDKILA 273 (297)
T ss_pred hCc----cchHHHHHHHHHhcchhHhHHHHHHh
Confidence 221 14667777788888888888766663
No 444
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.40 E-value=0.011 Score=64.75 Aligned_cols=123 Identities=15% Similarity=0.180 Sum_probs=72.3
Q ss_pred cCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchh-------hhhhcccCCCchhHHHHHHHHhhhhccc
Q 003873 394 ASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKAD-------AKISKGIGGSNANSIKELVSNEALSANM 466 (790)
Q Consensus 394 ~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~-------~~i~~~~g~s~~~~i~e~l~~a~~~~~~ 466 (790)
....+++.|+|+-|+|||.|.-.+...+-.+- ..|.... ..+....|.. +.+..+..+.
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~------k~R~HFh~FM~~vH~~l~~l~g~~--dpl~~iA~~~------ 127 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGER------KRRLHFHRFMARVHQRLHTLQGQT--DPLPPIADEL------ 127 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccc------cccccHHHHHHHHHHHHHHHcCCC--CccHHHHHHH------
Confidence 35679999999999999999999988774321 1111100 0011111111 1111111111
Q ss_pred cCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchh-------------hhhhccccccccccCCC
Q 003873 467 DRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQ-------------KLKSLVNYCSDLRFRKP 533 (790)
Q Consensus 467 ~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~-------------~l~~L~sR~~~I~F~~p 533 (790)
.....||.|||+.--.-.|..-+..|++.+-...+.+|+++|..... .|.-|.++|.++.+..+
T Consensus 128 ---~~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~ 204 (367)
T COG1485 128 ---AAETRVLCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDGP 204 (367)
T ss_pred ---HhcCCEEEeeeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEEEEecCC
Confidence 12346999999987666677777788887766678888888853322 23344566666665544
No 445
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.39 E-value=0.014 Score=62.33 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=27.9
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNAS 431 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaS 431 (790)
+....+||+||||+|||+++..+|... |..++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 456789999999999999998776532 5666666543
No 446
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.39 E-value=0.0031 Score=66.18 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=28.5
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
..++|.||||+||||+++.||+.+|+.++.+.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 34999999999999999999999998877754
No 447
>PTZ00293 thymidine kinase; Provisional
Probab=96.38 E-value=0.015 Score=60.03 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=60.1
Q ss_pred CcEEEEECCCCCChHH-HHHHHHHHh--CCcEEEEeC-CCCCC-chhhhhhcccCC----CchhHHHHHHHHhhhhcccc
Q 003873 397 EKAAILSGSPGMGKTT-AAKLVCQML--GFQAIEVNA-SDSRG-KADAKISKGIGG----SNANSIKELVSNEALSANMD 467 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTT-lA~~lAkel--g~~iiEina-Sd~rs-k~~~~i~~~~g~----s~~~~i~e~l~~a~~~~~~~ 467 (790)
...-|++||-++|||| |++.+.+.. |..++-+.+ .|.|. ... .+....|. .....+.+++...
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~DtR~~~~~-~I~Sh~g~~~~a~~v~~~~e~~~~~------- 75 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKDTRYSDEQ-NISSHDKQMLKAIKVSKLKEVLETA------- 75 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecccccCCCCC-cEEecCCCcceeEEcCCHHHHHHhc-------
Confidence 3578999999999999 888876544 566666644 45553 111 12111111 0112233333321
Q ss_pred CCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEec
Q 003873 468 RSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 468 ~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~n 511 (790)
....+|+|||++.+. .+.++.+.+....++|||-+=
T Consensus 76 ---~~~dvI~IDEaQFf~-----~i~~~~~~l~~~g~~VivaGL 111 (211)
T PTZ00293 76 ---KNYDVIAIDEGQFFP-----DLVEFSEAAANLGKIVIVAAL 111 (211)
T ss_pred ---cCCCEEEEEchHhhH-----hHHHHHHHHHHCCCeEEEEec
Confidence 234799999999884 266666766677888888653
No 448
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.37 E-value=0.0075 Score=71.65 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=20.6
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
+.++|+|+|||||||++..+...+
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l 184 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLAL 184 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999987776554
No 449
>PF13245 AAA_19: Part of AAA domain
Probab=96.37 E-value=0.006 Score=52.68 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=19.4
Q ss_pred CcEEEEECCCCCChH-HHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKT-TAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKT-TlA~~lAkel 421 (790)
.+.++|.||||+||| ++++.++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 356788999999999 5566666665
No 450
>PRK02496 adk adenylate kinase; Provisional
Probab=96.36 E-value=0.0034 Score=63.16 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=26.8
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
-++|.||||+||||+++.|++.+|+..+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 388999999999999999999999877654
No 451
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.35 E-value=0.021 Score=62.49 Aligned_cols=141 Identities=21% Similarity=0.195 Sum_probs=76.4
Q ss_pred CccccC-CHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCC
Q 003873 355 PNEIVG-NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDS 433 (790)
Q Consensus 355 l~dLvG-~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~ 433 (790)
+.++.+ ++..++-|++||-. .+... ......++|+|+.|+||||++.+|...+|-..+.+.++..
T Consensus 47 L~~~~~~d~~~~~~l~~~lg~----~L~~~----------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~ 112 (304)
T TIGR01613 47 LLETFGGDNELIEYLQRVIGY----SLTGN----------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLK 112 (304)
T ss_pred HHHHhCCCHHHHHHHHHHHhH----HhcCC----------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchh
Confidence 556655 44455555555544 22111 1346799999999999999999999988854332222210
Q ss_pred CCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHH--Hh-----------h
Q 003873 434 RGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIA--SI-----------K 500 (790)
Q Consensus 434 rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~--~i-----------~ 500 (790)
+.. +++ +.+ ..+. ...+.++++||++.-...+.+.+..+.. .+ -
T Consensus 113 -------~~~-~~~---~~f----~~a~--------l~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~ 169 (304)
T TIGR01613 113 -------MNE-FQE---HRF----GLAR--------LEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEF 169 (304)
T ss_pred -------hhh-ccC---CCc----hhhh--------hcCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEE
Confidence 000 000 000 0000 2345689999997433233344444442 00 0
Q ss_pred cCCCcEEEEecccchh--hhhhccccccccccCC
Q 003873 501 ISKIPIICICNDRYSQ--KLKSLVNYCSDLRFRK 532 (790)
Q Consensus 501 ~s~~pII~I~nd~~~~--~l~~L~sR~~~I~F~~ 532 (790)
.....+|+.+|+...- .-..+.+|...|.|..
T Consensus 170 ~~~~~~i~~tN~~P~~~~~~~a~~RR~~vi~f~~ 203 (304)
T TIGR01613 170 TPKFTLVQSTNHLPRIRGFDGGIKRRLRIIPFTK 203 (304)
T ss_pred EEeeEEEEEcCCCCccCCCChhheeeEEEEeccC
Confidence 1234467777753321 1246788988888864
No 452
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.35 E-value=0.016 Score=63.72 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..++|++|++|+||||++++|+..+
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999876
No 453
>PRK04040 adenylate kinase; Provisional
Probab=96.33 E-value=0.004 Score=63.30 Aligned_cols=31 Identities=29% Similarity=0.586 Sum_probs=26.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh--CCcEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML--GFQAIE 427 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel--g~~iiE 427 (790)
++.++|+|+|||||||+++.+++.+ ++.++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~ 34 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN 34 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe
Confidence 3579999999999999999999999 666543
No 454
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.32 E-value=0.028 Score=58.77 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQ 419 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAk 419 (790)
.+.++|+||.|+||||+.+.++-
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999986
No 455
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.30 E-value=0.066 Score=57.70 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=30.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRG 435 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rs 435 (790)
.++.++|+||+|+||||++..+|..+ |..+.-+.+...|.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 45788899999999999998888766 66666665544443
No 456
>PRK10436 hypothetical protein; Provisional
Probab=96.29 E-value=0.019 Score=66.19 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=40.1
Q ss_pred CCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 352 PKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 352 P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
+.++++|--.+..++.++..+.. ....+|++||+|+||||+++++..+++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~---------------------~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ---------------------PQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh---------------------cCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 34778887777788777777654 346899999999999999998888774
No 457
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.29 E-value=0.032 Score=58.76 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.+.+||+||...||||+++.++-..
T Consensus 43 ~~~~iiTGpN~sGKSt~lk~i~~~~ 67 (235)
T PF00488_consen 43 SRIIIITGPNMSGKSTFLKQIGLIV 67 (235)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eeEEEEeCCCccchhhHHHHHHHHh
Confidence 4789999999999999999987543
No 458
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.29 E-value=0.0045 Score=61.97 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=29.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEina 430 (790)
...++|.||+|+||||+++.||+.+++.++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3579999999999999999999999988877653
No 459
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.29 E-value=0.019 Score=57.76 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=25.5
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQA 425 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~i 425 (790)
.+.++|+||+|+||||+++.|++++.-.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccc
Confidence 47899999999999999999999986444
No 460
>PLN02200 adenylate kinase family protein
Probab=96.28 E-value=0.0046 Score=65.09 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=27.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
.+..++|.||||+||||+++.||+.+|+..+.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his 73 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLS 73 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 45689999999999999999999999976433
No 461
>PRK14527 adenylate kinase; Provisional
Probab=96.27 E-value=0.0035 Score=63.58 Aligned_cols=32 Identities=38% Similarity=0.630 Sum_probs=27.9
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
.+..++|.||||+||||+++.||+.+|+..+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 35789999999999999999999999876544
No 462
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.27 E-value=0.0086 Score=67.03 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
..-.+|.||||+||||+++.|++.+.
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Confidence 45678889999999999999998773
No 463
>PRK09354 recA recombinase A; Provisional
Probab=96.26 E-value=0.019 Score=63.68 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=60.8
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCC-------CchhHHHHHHHHhhhhc
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGG-------SNANSIKELVSNEALSA 464 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~-------s~~~~i~e~l~~a~~~~ 464 (790)
+..+.++|+||+|+||||++..++.+. |..++++++....... ....+|- .......+.+.......
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~---~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH---HHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 345789999999999999997766433 6677787765422211 0011110 01111222222111100
Q ss_pred cccCCCCCceEEEEecCCCCCcc--------c-------h---hHHHHHHHHhhcCCCcEEEEe
Q 003873 465 NMDRSKHPKTVLIMDEVDGMSAG--------D-------R---GGIADLIASIKISKIPIICIC 510 (790)
Q Consensus 465 ~~~~~~~~~~VLIIDEiD~L~~~--------~-------~---~~l~~Ll~~i~~s~~pII~I~ 510 (790)
......+||||=+-.+... + + ..+..|...+...++++|+|.
T Consensus 135 ----~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tN 194 (349)
T PRK09354 135 ----RSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFIN 194 (349)
T ss_pred ----hcCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEE
Confidence 1234579999998877641 1 1 124556666778888888874
No 464
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.24 E-value=0.0052 Score=66.02 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
..+++|.||+|+||||+++.++..+.
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 36899999999999999999998874
No 465
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.029 Score=62.60 Aligned_cols=107 Identities=17% Similarity=0.335 Sum_probs=66.3
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh--CCcEEEEeCCCCCCchhhhhhcccC-------CCchhHHHHHHHHhhhhccc
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML--GFQAIEVNASDSRGKADAKISKGIG-------GSNANSIKELVSNEALSANM 466 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel--g~~iiEinaSd~rsk~~~~i~~~~g-------~s~~~~i~e~l~~a~~~~~~ 466 (790)
....+||.|.||+|||||.--+|..+ ...++++.....-.....+ .+.++ -.....+.+++....
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklR-A~RL~~~~~~l~l~aEt~~e~I~~~l~----- 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLR-ADRLGLPTNNLYLLAETNLEDIIAELE----- 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHH-HHHhCCCccceEEehhcCHHHHHHHHH-----
Confidence 45689999999999999997777666 2378888765422110000 00111 011122334433322
Q ss_pred cCCCCCceEEEEecCCCCCccc-----------hhHHHHHHHHhhcCCCcEEEEec
Q 003873 467 DRSKHPKTVLIMDEVDGMSAGD-----------RGGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 467 ~~~~~~~~VLIIDEiD~L~~~~-----------~~~l~~Ll~~i~~s~~pII~I~n 511 (790)
..++.++|||-|..|...+ +..-.+|+++.+...+++++++.
T Consensus 166 ---~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 166 ---QEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred ---hcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 3467799999999887632 34556777777888999888764
No 466
>PF13479 AAA_24: AAA domain
Probab=96.23 E-value=0.0098 Score=61.61 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=41.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCC--CCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCce
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDS--RGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~--rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~ 474 (790)
+-.++||||||+||||+|..+ -.++.++.... +-..... ...+.-..-..+.+++..... ......
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~-----~k~l~id~E~g~~~~~~~~~-~~~i~i~s~~~~~~~~~~l~~------~~~~y~ 70 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL-----PKPLFIDTENGSDSLKFLDD-GDVIPITSWEDFLEALDELEE------DEADYD 70 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC-----CCeEEEEeCCCccchhhhcC-CCeeCcCCHHHHHHHHHHHHh------ccCCCC
Confidence 357999999999999999877 23445544221 1000000 000111123445555543211 134667
Q ss_pred EEEEecCCCC
Q 003873 475 VLIMDEVDGM 484 (790)
Q Consensus 475 VLIIDEiD~L 484 (790)
+||||-++.+
T Consensus 71 tiVIDsis~~ 80 (213)
T PF13479_consen 71 TIVIDSISWL 80 (213)
T ss_pred EEEEECHHHH
Confidence 9999988765
No 467
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.22 E-value=0.0042 Score=64.05 Aligned_cols=29 Identities=38% Similarity=0.618 Sum_probs=26.3
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 400 lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
++|.||||+||||+|+.||+.+|+.++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999999877654
No 468
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.21 E-value=0.022 Score=62.70 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..++||+|++|+||||++++|+.++
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4789999999999999999999874
No 469
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.20 E-value=0.0045 Score=64.03 Aligned_cols=30 Identities=40% Similarity=0.644 Sum_probs=26.8
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.++|+||||+||||+++.||+.+|+.++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999999877654
No 470
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.17 E-value=0.01 Score=65.15 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=30.5
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
....++|+|++||||||+++.||+.+|+.++.++
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 4578999999999999999999999999998543
No 471
>PRK01184 hypothetical protein; Provisional
Probab=96.17 E-value=0.0056 Score=61.53 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=25.8
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
..++|+||||+||||+++ +++++|+.++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 468999999999999988 788999887664
No 472
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.15 E-value=0.0039 Score=57.98 Aligned_cols=22 Identities=50% Similarity=0.613 Sum_probs=21.0
Q ss_pred EEEECCCCCChHHHHHHHHHHh
Q 003873 400 AILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 400 lLLsGPpGtGKTTlA~~lAkel 421 (790)
|+|+|+||+||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 473
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.15 E-value=0.036 Score=57.45 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=29.3
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---C------CcEEEEeCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---G------FQAIEVNASD 432 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g------~~iiEinaSd 432 (790)
....+.|+||||+|||+++..+|... + ..+++++..+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 45789999999999999999887653 3 5677777654
No 474
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.15 E-value=0.056 Score=59.55 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=28.9
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNAS 431 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaS 431 (790)
.+..++|.||+|+||||++..||..+ |..+.-+.+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 45789999999999999999998776 5666655543
No 475
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.13 E-value=0.019 Score=76.90 Aligned_cols=109 Identities=20% Similarity=0.271 Sum_probs=64.4
Q ss_pred CcEEEEECCCCCChHHHH----HHHHHH---hCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCC
Q 003873 397 EKAAILSGSPGMGKTTAA----KLVCQM---LGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRS 469 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA----~~lAke---lg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~ 469 (790)
.+.++|.|++|+||||++ ..+... .|+.++-+-++. +....+.. . +.....|..|+........ ...
T Consensus 1036 ~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~---~Aa~~L~~-~-g~~a~Ti~s~l~~~~~~~~-~~~ 1109 (1960)
T TIGR02760 1036 DRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTH---EAVGELKS-A-GVQAQTLDSFLTDISLYRN-SGG 1109 (1960)
T ss_pred CcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChH---HHHHHHHh-c-CCchHhHHHHhcCcccccc-cCC
Confidence 468999999999999999 444433 367776664432 11112222 1 2233456666643211110 111
Q ss_pred CCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccc
Q 003873 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY 514 (790)
Q Consensus 470 ~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~ 514 (790)
.....||||||+-.+... .+..|+..+......+|++.....
T Consensus 1110 ~~~~~v~ivDEasMv~~~---~~~~l~~~~~~~~ak~vlvGD~~Q 1151 (1960)
T TIGR02760 1110 DFRNTLFILDESSMVSNF---QLTHATELVQKSGSRAVSLGDIAQ 1151 (1960)
T ss_pred CCcccEEEEEccccccHH---HHHHHHHhccCCCCEEEEeCChhh
Confidence 345679999999888654 344566655666788999886543
No 476
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.13 E-value=0.047 Score=54.13 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||.|+||||++++++..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999776
No 477
>PRK04182 cytidylate kinase; Provisional
Probab=96.11 E-value=0.0057 Score=60.74 Aligned_cols=29 Identities=41% Similarity=0.756 Sum_probs=26.5
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
.++|+|++|+||||+++.||+.+|+.++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 58999999999999999999999987765
No 478
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.11 E-value=0.0059 Score=65.65 Aligned_cols=32 Identities=38% Similarity=0.470 Sum_probs=22.6
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh---CCcEEEEe
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML---GFQAIEVN 429 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEin 429 (790)
..++|+|-||+||||+|+.|++.+ +..++.++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 368999999999999999999876 56666665
No 479
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.11 E-value=0.054 Score=56.36 Aligned_cols=35 Identities=26% Similarity=0.219 Sum_probs=26.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNA 430 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEina 430 (790)
....++|.||||+|||+++..++.+. |..++.++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45789999999999999998776432 556666654
No 480
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.10 E-value=0.04 Score=55.13 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+||||++++++..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999999775
No 481
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.09 E-value=0.033 Score=58.58 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=27.7
Q ss_pred EEEEECCCCCChHHHHHHHHHHh---------------CCcEEEEeCCCCC
Q 003873 399 AAILSGSPGMGKTTAAKLVCQML---------------GFQAIEVNASDSR 434 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkel---------------g~~iiEinaSd~r 434 (790)
.-||.||+|+|||+++..+|-.. +..+++++..+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~ 53 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPR 53 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCH
Confidence 46899999999999998888642 2357778776543
No 482
>PRK04328 hypothetical protein; Provisional
Probab=96.08 E-value=0.033 Score=59.16 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=26.3
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHH-h--CCcEEEEeC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQM-L--GFQAIEVNA 430 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAke-l--g~~iiEina 430 (790)
....+||+||||+|||+++..++.+ + |...++++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4678999999999999998766543 2 556666654
No 483
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.06 E-value=0.019 Score=57.21 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.2
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
+.++|.||+|+||||+++.|++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 57899999999999999999997643
No 484
>PRK14529 adenylate kinase; Provisional
Probab=96.02 E-value=0.033 Score=58.24 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=25.9
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
.++|.||||+||||.++.|++.+++..+.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 38899999999999999999999987653
No 485
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.01 E-value=0.0065 Score=65.96 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=25.9
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh-CCcEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML-GFQAIE 427 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel-g~~iiE 427 (790)
..++|+|+||+||||+|+.|++.+ ++.++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 578999999999999999999998 654443
No 486
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.01 E-value=0.068 Score=56.65 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||.|+||||++++|+..+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999765
No 487
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.01 E-value=0.016 Score=56.59 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=28.7
Q ss_pred ceEEEEecCCCCCccc-hhHHHHHHHHhhcC-CCcEEEEeccc
Q 003873 473 KTVLIMDEVDGMSAGD-RGGIADLIASIKIS-KIPIICICNDR 513 (790)
Q Consensus 473 ~~VLIIDEiD~L~~~~-~~~l~~Ll~~i~~s-~~pII~I~nd~ 513 (790)
..+|||||+|.+.... ...+..+++.+... ..++|+++.+.
T Consensus 120 ~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~ 162 (169)
T PF00270_consen 120 LSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATL 162 (169)
T ss_dssp ESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSS
T ss_pred ceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCC
Confidence 5799999999998843 34456666665443 57777777653
No 488
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.01 E-value=0.071 Score=59.81 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.+.+.|.||.|+||||++--||..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999998876666554
No 489
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.037 Score=55.46 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||.|+||||++++++..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35688999999999999999999765
No 490
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=96.00 E-value=0.028 Score=65.71 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
...++|.|+.||||||=+--+..+.|+
T Consensus 66 nqvlIviGeTGsGKSTQipQyL~eaG~ 92 (674)
T KOG0922|consen 66 NQVLIVIGETGSGKSTQIPQYLAEAGF 92 (674)
T ss_pred CCEEEEEcCCCCCccccHhHHHHhccc
Confidence 478999999999999976555555554
No 491
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.99 E-value=0.0071 Score=59.58 Aligned_cols=29 Identities=41% Similarity=0.683 Sum_probs=26.2
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
.++|+|++|+||||+|+.|++.+|+.++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 58899999999999999999999988654
No 492
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.044 Score=54.59 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+||||++++++..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999765
No 493
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.98 E-value=0.0084 Score=50.59 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.7
Q ss_pred EEEECCCCCChHHHHHHHHHHh
Q 003873 400 AILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 400 lLLsGPpGtGKTTlA~~lAkel 421 (790)
+.|+|++|+||||+++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999996
No 494
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.97 E-value=0.028 Score=66.69 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=40.4
Q ss_pred CCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 352 PKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 352 P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
+.++++|-..+..++.|...+.. ....+|++||+|+||||+.+++.++++
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------------------~~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------------------PQGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------------------cCCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 45788887788888888776664 346789999999999999998888874
No 495
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.94 E-value=0.055 Score=72.53 Aligned_cols=110 Identities=18% Similarity=0.302 Sum_probs=63.2
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhh-------h-hc
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEA-------L-SA 464 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~-------~-~~ 464 (790)
..+..+|.|++|+||||+++.+...+ |+.++-+-++.. ....+....+.. ...|..++.... . .+
T Consensus 445 ~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgr---AA~~L~e~~g~~-A~Ti~~~l~~l~~~~~~~tv~~f 520 (1960)
T TIGR02760 445 TKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSL---SAQELRQKIPRL-ASTFITWVKNLFNDDQDHTVQGL 520 (1960)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHH---HHHHHHHHhcch-hhhHHHHHHhhcccccchhHHHh
Confidence 35799999999999999999986554 777776654421 111222221111 111222221100 0 00
Q ss_pred -cccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 465 -NMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 465 -~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
..........||||||+..+... .+..|++........||++...
T Consensus 521 l~~~~~l~~~~vlIVDEAsMl~~~---~~~~Ll~~a~~~garvVlvGD~ 566 (1960)
T TIGR02760 521 LDKSSPFSNKDIFVVDEANKLSNN---ELLKLIDKAEQHNSKLILLNDS 566 (1960)
T ss_pred hcccCCCCCCCEEEEECCCCCCHH---HHHHHHHHHhhcCCEEEEEcCh
Confidence 00000135679999999988653 4556666666677888888764
No 496
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.93 E-value=0.039 Score=56.32 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
....++|.||+|+||||+++.|+..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 357899999999999999999999875
No 497
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.91 E-value=0.019 Score=59.65 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=59.9
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHh----CCcEEEEeCCCCCCchhhhh-----------hc----cc---C------
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQML----GFQAIEVNASDSRGKADAKI-----------SK----GI---G------ 446 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkel----g~~iiEinaSd~rsk~~~~i-----------~~----~~---g------ 446 (790)
+....+||+||||+|||+++..++... |-.++++............+ .. .+ .
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~ 96 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWS 96 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-T
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccccc
Confidence 356789999999999999997665322 77788877543221100000 00 00 0
Q ss_pred CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc-c----chhHHHHHHHHhhcCCCcEEEEec
Q 003873 447 GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA-G----DRGGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 447 ~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~-~----~~~~l~~Ll~~i~~s~~pII~I~n 511 (790)
......+...+..... ..+..+++||-+..+.. . .+..+..+...++...+.+|+++.
T Consensus 97 ~~~~~~l~~~i~~~i~-------~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~ 159 (226)
T PF06745_consen 97 PNDLEELLSKIREAIE-------ELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSE 159 (226)
T ss_dssp SCCHHHHHHHHHHHHH-------HHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCHHHHHHHHHHHHH-------hcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEc
Confidence 0111222222222211 11236999999887722 1 234566777777888888888766
No 498
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.90 E-value=0.0089 Score=60.14 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+||||++++++..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999776
No 499
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.90 E-value=0.063 Score=61.19 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+||||++..||..+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999888754
No 500
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.90 E-value=0.075 Score=59.74 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=22.2
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..+|++||+|+||||++++++.++
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999887
Done!