Query 003873
Match_columns 790
No_of_seqs 605 out of 4089
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 06:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_A Activator 1 95 kDa subu 100.0 1.5E-59 5.1E-64 543.2 29.8 431 340-789 23-461 (516)
2 3u61_B DNA polymerase accessor 100.0 4.1E-27 1.4E-31 255.1 22.8 284 340-680 10-302 (324)
3 2k6g_A Replication factor C su 99.9 1.6E-25 5.5E-30 204.4 11.0 104 177-280 5-108 (109)
4 2chq_A Replication factor C sm 99.9 8.6E-25 2.9E-29 234.6 15.2 232 343-615 4-240 (319)
5 1iqp_A RFCS; clamp loader, ext 99.9 5E-24 1.7E-28 229.4 20.8 233 342-615 11-248 (327)
6 1sxj_D Activator 1 41 kDa subu 99.9 4.9E-24 1.7E-28 232.5 19.9 224 341-596 22-261 (353)
7 2ebu_A Replication factor C su 99.9 1.5E-24 5E-29 198.4 12.1 95 186-280 4-98 (112)
8 1sxj_C Activator 1 40 kDa subu 99.9 3.6E-24 1.2E-28 234.0 17.6 215 343-595 12-236 (340)
9 2chg_A Replication factor C sm 99.9 1.3E-22 4.6E-27 204.3 24.3 216 343-596 4-224 (226)
10 1sxj_E Activator 1 40 kDa subu 99.9 1E-23 3.5E-28 230.6 17.2 206 344-583 2-244 (354)
11 3pvs_A Replication-associated 99.9 9.7E-23 3.3E-27 231.0 23.9 213 343-597 13-243 (447)
12 1sxj_B Activator 1 37 kDa subu 99.9 5.4E-23 1.8E-27 221.0 20.4 217 342-595 7-228 (323)
13 1jr3_A DNA polymerase III subu 99.9 1.5E-22 5.2E-27 222.3 21.8 215 343-596 3-242 (373)
14 3pfi_A Holliday junction ATP-d 99.9 2.9E-21 1E-25 210.2 25.1 217 341-597 14-253 (338)
15 1njg_A DNA polymerase III subu 99.9 2.1E-21 7.1E-26 197.7 22.2 214 343-595 10-248 (250)
16 3uk6_A RUVB-like 2; hexameric 99.8 1.9E-19 6.5E-24 197.8 21.7 236 343-596 30-328 (368)
17 3bos_A Putative DNA replicatio 99.8 2.2E-19 7.5E-24 184.0 19.1 207 343-595 14-240 (242)
18 1hqc_A RUVB; extended AAA-ATPa 99.8 7E-19 2.4E-23 189.7 22.9 212 345-595 1-235 (324)
19 1l7b_A DNA ligase; BRCT, autos 99.8 1.5E-20 5.1E-25 166.5 7.0 77 202-280 5-81 (92)
20 3vfd_A Spastin; ATPase, microt 99.8 1.4E-18 4.8E-23 193.4 23.3 211 343-578 102-327 (389)
21 1in4_A RUVB, holliday junction 99.8 6.2E-18 2.1E-22 184.5 27.5 252 343-634 12-290 (334)
22 2c9o_A RUVB-like 1; hexameric 99.8 3.1E-18 1.1E-22 194.7 23.1 119 474-595 297-434 (456)
23 3eie_A Vacuolar protein sortin 99.8 3E-18 1E-22 186.0 20.4 199 344-567 6-218 (322)
24 2v1u_A Cell division control p 99.8 6.6E-18 2.2E-22 185.5 20.8 231 342-597 8-275 (387)
25 1fnn_A CDC6P, cell division co 99.8 2.1E-17 7.2E-22 182.0 24.1 232 343-597 7-273 (389)
26 2qby_B CDC6 homolog 3, cell di 99.8 3.2E-18 1.1E-22 188.6 17.4 226 342-597 9-269 (384)
27 2qp9_X Vacuolar protein sortin 99.8 5.6E-18 1.9E-22 186.5 17.4 200 343-567 38-251 (355)
28 3te6_A Regulatory protein SIR3 99.8 1E-17 3.5E-22 181.2 18.6 211 345-581 11-284 (318)
29 3b9p_A CG5977-PA, isoform A; A 99.8 2.3E-17 8E-22 176.0 19.9 207 345-576 10-232 (297)
30 3d8b_A Fidgetin-like protein 1 99.7 4.1E-17 1.4E-21 179.7 21.8 204 345-573 73-291 (357)
31 2z4s_A Chromosomal replication 99.7 2.3E-17 7.9E-22 186.7 18.0 209 354-597 103-331 (440)
32 4b4t_J 26S protease regulatory 99.7 5.9E-17 2E-21 179.5 20.5 226 344-595 136-386 (405)
33 1ofh_A ATP-dependent HSL prote 99.7 3E-17 1E-21 175.3 17.0 230 356-601 15-302 (310)
34 3syl_A Protein CBBX; photosynt 99.7 4.9E-17 1.7E-21 174.2 18.5 201 357-581 32-260 (309)
35 2qz4_A Paraplegin; AAA+, SPG7, 99.7 2.4E-16 8.3E-21 164.4 22.5 204 352-580 2-226 (262)
36 2cok_A Poly [ADP-ribose] polym 99.7 3.9E-18 1.3E-22 156.3 7.6 76 202-280 8-86 (113)
37 4b4t_I 26S protease regulatory 99.7 1.4E-16 4.7E-21 177.1 20.7 228 343-595 169-420 (437)
38 1lv7_A FTSH; alpha/beta domain 99.7 1.3E-16 4.4E-21 167.0 19.2 225 345-596 1-250 (257)
39 1l8q_A Chromosomal replication 99.7 2.9E-17 9.9E-22 177.9 14.7 193 353-582 8-214 (324)
40 4b4t_L 26S protease subunit RP 99.7 1.5E-16 5.2E-21 178.6 20.7 221 347-595 172-419 (437)
41 4b4t_H 26S protease regulatory 99.7 2E-16 6.7E-21 177.5 21.2 222 345-593 198-445 (467)
42 3h4m_A Proteasome-activating n 99.7 1.1E-16 3.8E-21 169.6 17.4 224 347-596 8-256 (285)
43 1xwi_A SKD1 protein; VPS4B, AA 99.7 1.6E-16 5.3E-21 172.7 18.5 202 348-574 4-220 (322)
44 1a5t_A Delta prime, HOLB; zinc 99.7 1.2E-16 4E-21 174.4 16.8 178 361-579 7-208 (334)
45 4b4t_M 26S protease regulatory 99.7 1.5E-16 5E-21 178.6 17.6 229 345-597 170-421 (434)
46 2qby_A CDC6 homolog 1, cell di 99.7 3.8E-16 1.3E-20 171.1 18.7 229 343-596 10-270 (386)
47 4b4t_K 26S protease regulatory 99.7 5.8E-16 2E-20 173.6 19.6 228 345-596 161-412 (428)
48 2zan_A Vacuolar protein sortin 99.7 3.9E-16 1.3E-20 176.9 18.3 200 343-567 121-335 (444)
49 2gno_A DNA polymerase III, gam 99.7 2.1E-16 7.1E-21 170.5 13.5 169 360-578 1-175 (305)
50 3pxg_A Negative regulator of g 99.6 3.3E-16 1.1E-20 178.6 12.6 194 341-580 165-382 (468)
51 2r44_A Uncharacterized protein 99.6 5.2E-16 1.8E-20 168.4 12.9 219 344-596 15-295 (331)
52 1jbk_A CLPB protein; beta barr 99.6 3.5E-16 1.2E-20 153.4 9.3 167 343-542 9-194 (195)
53 2ce7_A Cell division protein F 99.6 8.2E-15 2.8E-19 166.7 19.6 224 346-597 5-255 (476)
54 1qvr_A CLPB protein; coiled co 99.6 4E-15 1.4E-19 181.6 17.1 205 343-580 157-389 (854)
55 1d2n_A N-ethylmaleimide-sensit 99.6 6E-15 2.1E-19 155.7 15.6 195 356-583 33-249 (272)
56 3cf0_A Transitional endoplasmi 99.6 3.7E-15 1.3E-19 160.1 13.9 201 349-578 8-234 (301)
57 4fcw_A Chaperone protein CLPB; 99.6 1.2E-14 4.1E-19 155.6 16.0 202 356-581 17-276 (311)
58 2p65_A Hypothetical protein PF 99.6 1.8E-15 6E-20 148.3 8.6 159 343-534 9-187 (187)
59 1r6b_X CLPA protein; AAA+, N-t 99.6 2.2E-14 7.6E-19 172.8 19.9 223 341-597 171-432 (758)
60 1um8_A ATP-dependent CLP prote 99.6 1.1E-14 3.7E-19 161.0 14.3 214 357-581 22-337 (376)
61 2r62_A Cell division protease 99.6 2.1E-16 7.3E-21 166.0 -0.2 222 348-594 3-249 (268)
62 3hu3_A Transitional endoplasmi 99.6 2.7E-14 9.4E-19 163.4 16.1 203 347-576 195-414 (489)
63 1g8p_A Magnesium-chelatase 38 99.6 2.7E-14 9.2E-19 155.3 15.1 229 348-596 16-320 (350)
64 1jr3_D DNA polymerase III, del 99.5 4.1E-14 1.4E-18 154.4 16.2 193 396-615 17-223 (343)
65 2bjv_A PSP operon transcriptio 99.5 2E-14 6.9E-19 150.9 12.8 203 354-581 4-238 (265)
66 2dhr_A FTSH; AAA+ protein, hex 99.5 6.2E-14 2.1E-18 160.4 17.9 227 344-597 20-270 (499)
67 3pxi_A Negative regulator of g 99.5 1.9E-14 6.7E-19 173.4 14.2 193 342-580 166-382 (758)
68 2owo_A DNA ligase; protein-DNA 99.5 6.6E-16 2.2E-20 180.3 0.0 76 202-278 595-670 (671)
69 3hws_A ATP-dependent CLP prote 99.5 9.4E-15 3.2E-19 160.9 9.1 210 357-581 16-320 (363)
70 1ixz_A ATP-dependent metallopr 99.5 2.2E-13 7.4E-18 142.1 17.7 221 347-594 7-252 (254)
71 3cf2_A TER ATPase, transitiona 99.5 2.8E-14 9.5E-19 170.8 12.0 196 353-574 201-416 (806)
72 1dgs_A DNA ligase; AMP complex 99.5 2E-15 6.7E-20 176.1 0.0 76 202-279 585-660 (667)
73 3m6a_A ATP-dependent protease 99.5 2E-13 6.9E-18 158.4 15.4 202 355-581 80-313 (543)
74 1r6b_X CLPA protein; AAA+, N-t 99.5 5.4E-13 1.8E-17 160.8 17.6 202 356-581 458-713 (758)
75 1iy2_A ATP-dependent metallopr 99.5 1.1E-12 3.9E-17 138.8 18.0 216 350-594 34-276 (278)
76 1w5s_A Origin recognition comp 99.5 2E-12 6.8E-17 143.4 20.3 228 345-595 14-290 (412)
77 1ojl_A Transcriptional regulat 99.4 1E-12 3.5E-17 141.5 16.6 195 356-582 2-234 (304)
78 3pxi_A Negative regulator of g 99.4 5.2E-13 1.8E-17 160.9 15.3 193 356-579 491-720 (758)
79 3cf2_A TER ATPase, transitiona 99.4 2E-13 6.8E-18 163.5 9.3 204 353-580 474-698 (806)
80 1qvr_A CLPB protein; coiled co 99.4 1.4E-12 4.9E-17 159.0 15.1 201 356-580 558-816 (854)
81 3t15_A Ribulose bisphosphate c 99.4 6.8E-12 2.3E-16 134.2 18.0 160 395-570 34-221 (293)
82 1g41_A Heat shock protein HSLU 99.4 2.8E-12 9.4E-17 144.3 15.5 72 356-434 15-87 (444)
83 2x8a_A Nuclear valosin-contain 99.4 1.4E-11 4.7E-16 130.7 17.6 200 352-578 6-231 (274)
84 3k1j_A LON protease, ATP-depen 99.3 4.4E-12 1.5E-16 149.0 12.8 230 345-596 30-373 (604)
85 3ec2_A DNA replication protein 99.3 3.5E-12 1.2E-16 125.9 6.7 134 348-515 2-145 (180)
86 3l3e_A DNA topoisomerase 2-bin 99.3 9.7E-12 3.3E-16 113.2 8.6 83 198-281 9-93 (107)
87 2d8m_A DNA-repair protein XRCC 99.2 9.3E-12 3.2E-16 117.2 7.9 77 202-280 20-96 (129)
88 1ypw_A Transitional endoplasmi 99.2 1.6E-11 5.6E-16 148.5 11.0 201 349-575 197-413 (806)
89 3co5_A Putative two-component 99.2 8.5E-12 2.9E-16 119.1 6.2 113 357-514 5-117 (143)
90 2qen_A Walker-type ATPase; unk 99.2 3.5E-10 1.2E-14 122.0 18.2 195 352-575 8-245 (350)
91 3n70_A Transport activator; si 99.2 3.8E-11 1.3E-15 114.7 8.3 116 356-516 1-119 (145)
92 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 9E-11 3.1E-15 134.4 12.9 206 356-592 22-280 (500)
93 1ypw_A Transitional endoplasmi 99.1 1.6E-12 5.6E-17 157.3 -5.5 209 349-582 470-700 (806)
94 2w58_A DNAI, primosome compone 99.0 6.7E-10 2.3E-14 111.3 10.7 136 346-514 15-160 (202)
95 2fna_A Conserved hypothetical 99.0 5.6E-09 1.9E-13 112.7 16.8 192 353-578 10-252 (357)
96 3f9v_A Minichromosome maintena 99.0 2.5E-10 8.6E-15 133.7 5.5 219 356-595 295-584 (595)
97 1u0j_A DNA replication protein 98.9 4.6E-09 1.6E-13 110.3 12.3 125 397-554 104-258 (267)
98 3dzd_A Transcriptional regulat 98.9 2.8E-09 9.6E-14 117.7 8.5 195 356-582 129-360 (368)
99 2qgz_A Helicase loader, putati 98.9 1.9E-09 6.5E-14 116.2 6.8 135 346-514 114-259 (308)
100 1ny5_A Transcriptional regulat 98.8 7.6E-08 2.6E-12 106.9 17.0 205 355-591 136-380 (387)
101 2kjq_A DNAA-related protein; s 98.7 2.7E-08 9.2E-13 95.7 10.1 99 397-526 36-140 (149)
102 3olc_X DNA topoisomerase 2-bin 98.7 1.5E-08 5E-13 108.7 7.1 78 202-281 197-275 (298)
103 3ef1_A RNA polymerase II subun 98.7 3E-08 1E-12 110.7 8.3 79 201-280 349-431 (442)
104 3ef0_A RNA polymerase II subun 98.6 4E-08 1.4E-12 108.1 8.8 78 202-280 280-361 (372)
105 1tue_A Replication protein E1; 98.6 5.2E-08 1.8E-12 98.2 8.2 105 397-531 58-177 (212)
106 4id3_A DNA repair protein REV1 98.6 8.6E-08 2.9E-12 84.0 7.6 76 202-281 5-82 (92)
107 3upu_A ATP-dependent DNA helic 98.6 1.8E-07 6.1E-12 106.1 11.5 144 340-512 8-164 (459)
108 4akg_A Glutathione S-transfera 98.5 3.9E-07 1.3E-11 121.2 15.1 138 397-548 1267-1433(2695)
109 3olc_X DNA topoisomerase 2-bin 98.5 1.2E-07 4.2E-12 101.5 8.1 76 203-280 104-179 (298)
110 3l46_A Protein ECT2; alternati 98.5 6E-08 2E-12 88.7 3.7 77 204-282 21-97 (112)
111 2cou_A ECT2 protein; BRCT doma 98.3 3E-07 1E-11 83.7 4.9 76 204-281 12-87 (109)
112 1ye8_A Protein THEP1, hypothet 98.3 1.8E-06 6.1E-11 85.4 10.5 72 472-543 99-173 (178)
113 3vkg_A Dynein heavy chain, cyt 98.1 2.4E-05 8E-10 105.1 16.8 137 397-547 1304-1470(3245)
114 4akg_A Glutathione S-transfera 98.1 4.8E-05 1.7E-09 101.5 19.4 157 397-579 645-836 (2695)
115 2ebw_A DNA repair protein REV1 98.1 1.2E-05 4.1E-10 71.2 9.3 76 201-280 9-85 (97)
116 1z6t_A APAF-1, apoptotic prote 98.0 0.00011 3.6E-09 85.5 18.6 193 350-579 118-331 (591)
117 3f8t_A Predicted ATPase involv 97.9 4.6E-05 1.6E-09 85.6 12.5 208 358-595 215-480 (506)
118 2vhj_A Ntpase P4, P4; non- hyd 97.9 3.1E-05 1.1E-09 83.3 9.1 97 397-511 123-234 (331)
119 2a5y_B CED-4; apoptosis; HET: 97.9 0.00017 5.9E-09 83.4 16.1 178 359-572 131-333 (549)
120 2b8t_A Thymidine kinase; deoxy 97.8 5.6E-05 1.9E-09 77.4 9.6 102 397-511 12-124 (223)
121 3crm_A TRNA delta(2)-isopenten 97.8 2.8E-05 9.7E-10 83.9 7.3 161 397-587 5-178 (323)
122 3pa6_A Microcephalin; BRCT dom 97.7 0.00013 4.6E-09 65.9 9.6 76 204-280 7-85 (107)
123 2r8r_A Sensor protein; KDPD, P 97.7 0.00027 9.4E-09 72.3 13.0 134 398-543 7-174 (228)
124 1kzy_C Tumor suppressor P53-bi 97.7 0.0001 3.6E-09 77.1 9.2 83 197-280 9-125 (259)
125 2orw_A Thymidine kinase; TMTK, 97.6 5.9E-05 2E-09 74.8 6.1 101 397-511 3-111 (184)
126 2r2a_A Uncharacterized protein 97.6 7.3E-05 2.5E-09 75.2 6.9 125 397-532 5-152 (199)
127 3sfz_A APAF-1, apoptotic pepti 97.6 0.0011 3.7E-08 83.1 18.7 189 350-576 118-327 (1249)
128 2cvh_A DNA repair and recombin 97.6 0.00054 1.9E-08 68.4 13.0 37 396-432 19-55 (220)
129 3sqd_A PAX-interacting protein 97.5 8.5E-05 2.9E-09 75.9 6.1 76 203-280 12-87 (219)
130 3vkg_A Dynein heavy chain, cyt 97.5 0.0019 6.6E-08 87.1 20.1 158 397-580 604-797 (3245)
131 3foz_A TRNA delta(2)-isopenten 97.5 0.00023 8E-09 76.1 8.8 159 396-586 9-182 (316)
132 1l0b_A BRCA1; TANDEM-BRCT, thr 97.4 0.00018 6.1E-09 73.5 7.4 77 203-280 3-84 (229)
133 2vxb_A DNA repair protein RHP9 97.4 0.00029 9.9E-09 73.0 8.8 78 203-280 1-106 (241)
134 3pc6_A DNA repair protein XRCC 97.4 0.00053 1.8E-08 61.6 9.4 79 202-281 5-85 (104)
135 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00047 1.6E-08 69.2 10.1 36 396-431 22-60 (235)
136 3exa_A TRNA delta(2)-isopenten 97.4 0.00027 9.1E-09 75.8 8.3 158 398-587 4-177 (322)
137 2zr9_A Protein RECA, recombina 97.4 0.00064 2.2E-08 74.2 11.2 106 396-511 60-196 (349)
138 2i3b_A HCR-ntpase, human cance 97.4 0.00072 2.5E-08 67.3 10.6 72 471-543 104-181 (189)
139 3cmu_A Protein RECA, recombina 97.3 0.00063 2.2E-08 88.3 10.7 40 395-434 1425-1467(2050)
140 1t15_A Breast cancer type 1 su 97.3 0.00037 1.3E-08 70.2 7.0 74 206-280 3-81 (214)
141 1xp8_A RECA protein, recombina 97.2 0.0021 7E-08 70.6 13.4 105 396-510 73-208 (366)
142 1wf6_A Similar to S.pombe -RAD 97.2 0.0011 3.9E-08 62.0 9.6 81 198-281 34-117 (132)
143 2dr3_A UPF0273 protein PH0284; 97.2 0.0012 3.9E-08 67.2 10.4 37 396-432 22-61 (247)
144 1n0w_A DNA repair protein RAD5 97.2 0.00094 3.2E-08 67.7 9.5 37 396-432 23-68 (243)
145 1u94_A RECA protein, recombina 97.2 0.0012 4.3E-08 72.1 10.8 106 396-511 62-198 (356)
146 3hr8_A Protein RECA; alpha and 97.2 0.0024 8.1E-08 69.9 12.8 38 396-433 60-100 (356)
147 1vt4_I APAF-1 related killer D 97.1 0.0044 1.5E-07 75.9 15.8 156 358-546 130-311 (1221)
148 3ii6_X DNA ligase 4; XRCC4, NH 97.1 0.0012 4.1E-08 69.2 9.7 80 198-280 4-85 (263)
149 1xx6_A Thymidine kinase; NESG, 97.1 0.00081 2.8E-08 67.1 7.9 101 397-511 8-116 (191)
150 3trf_A Shikimate kinase, SK; a 97.1 0.00026 8.9E-09 69.1 4.1 33 397-429 5-37 (185)
151 1qhx_A CPT, protein (chloramph 97.1 0.00039 1.3E-08 67.3 5.2 33 397-429 3-35 (178)
152 1ex7_A Guanylate kinase; subst 97.1 0.0017 5.9E-08 64.4 9.5 129 398-544 2-134 (186)
153 1nlf_A Regulatory protein REPA 97.1 0.0018 6.3E-08 67.8 10.3 26 396-421 29-54 (279)
154 1w4r_A Thymidine kinase; type 97.1 0.00044 1.5E-08 69.1 5.1 96 396-511 19-125 (195)
155 2ehv_A Hypothetical protein PH 97.0 0.00087 3E-08 68.2 7.4 35 396-430 29-67 (251)
156 3sr0_A Adenylate kinase; phosp 97.0 0.003 1E-07 63.6 11.2 29 399-427 2-30 (206)
157 3kb2_A SPBC2 prophage-derived 97.0 0.00041 1.4E-08 66.4 4.6 32 398-429 2-33 (173)
158 2nte_A BARD-1, BRCA1-associate 97.0 0.00075 2.6E-08 68.0 6.7 73 207-280 2-76 (210)
159 3e1s_A Exodeoxyribonuclease V, 97.0 0.00097 3.3E-08 77.6 8.4 107 398-512 205-315 (574)
160 2fz4_A DNA repair protein RAD2 97.0 0.0035 1.2E-07 64.3 11.4 33 399-431 110-142 (237)
161 3vaa_A Shikimate kinase, SK; s 97.0 0.00046 1.6E-08 68.6 4.3 34 396-429 24-57 (199)
162 3jvv_A Twitching mobility prot 97.0 0.0055 1.9E-07 67.0 13.3 101 397-512 123-230 (356)
163 1v5w_A DMC1, meiotic recombina 96.9 0.0019 6.4E-08 70.2 9.0 38 396-433 121-167 (343)
164 1cr0_A DNA primase/helicase; R 96.9 0.0033 1.1E-07 66.3 10.5 36 396-431 34-73 (296)
165 1g5t_A COB(I)alamin adenosyltr 96.9 0.0023 8E-08 63.9 8.5 116 397-518 28-168 (196)
166 2z43_A DNA repair and recombin 96.9 0.0015 5.1E-08 70.3 7.7 38 396-433 106-152 (324)
167 2etx_A Mediator of DNA damage 96.9 0.0017 5.8E-08 65.6 7.5 72 204-280 9-80 (209)
168 1pzn_A RAD51, DNA repair and r 96.8 0.003 1E-07 68.8 10.0 37 396-432 130-175 (349)
169 1zuh_A Shikimate kinase; alpha 96.8 0.00083 2.8E-08 64.6 4.9 32 397-428 7-38 (168)
170 3iij_A Coilin-interacting nucl 96.8 0.0006 2E-08 66.4 3.9 32 397-428 11-42 (180)
171 2rhm_A Putative kinase; P-loop 96.8 0.00084 2.9E-08 65.7 4.9 32 397-428 5-36 (193)
172 1kag_A SKI, shikimate kinase I 96.8 0.0008 2.7E-08 64.8 4.7 30 398-427 5-34 (173)
173 1via_A Shikimate kinase; struc 96.8 0.00077 2.6E-08 65.3 4.5 31 398-428 5-35 (175)
174 4a74_A DNA repair and recombin 96.8 0.0025 8.7E-08 63.9 8.4 37 396-432 24-69 (231)
175 2iyv_A Shikimate kinase, SK; t 96.8 0.00062 2.1E-08 66.4 3.6 32 398-429 3-34 (184)
176 1y63_A LMAJ004144AAA protein; 96.8 0.00076 2.6E-08 66.2 3.9 33 396-428 9-42 (184)
177 3lw7_A Adenylate kinase relate 96.7 0.001 3.6E-08 63.3 4.7 30 398-428 2-31 (179)
178 2ze6_A Isopentenyl transferase 96.7 0.001 3.5E-08 69.0 4.6 33 398-430 2-34 (253)
179 2j9r_A Thymidine kinase; TK1, 96.7 0.0029 9.8E-08 64.2 7.7 102 396-511 27-136 (214)
180 2cdn_A Adenylate kinase; phosp 96.7 0.0014 4.8E-08 65.0 5.4 33 396-428 19-51 (201)
181 1e6c_A Shikimate kinase; phosp 96.7 0.0011 3.8E-08 63.6 4.5 31 398-428 3-33 (173)
182 3cmw_A Protein RECA, recombina 96.7 0.0036 1.2E-07 80.4 10.3 84 396-487 1081-1175(1706)
183 3t61_A Gluconokinase; PSI-biol 96.7 0.0012 4E-08 65.6 4.7 32 397-428 18-49 (202)
184 3u3z_A Microcephalin; DNA repa 96.7 0.0022 7.4E-08 64.4 6.7 74 206-280 10-84 (199)
185 2r6a_A DNAB helicase, replicat 96.7 0.0077 2.6E-07 67.8 11.9 38 395-432 201-242 (454)
186 2c95_A Adenylate kinase 1; tra 96.7 0.0013 4.6E-08 64.4 4.9 32 397-428 9-40 (196)
187 3al2_A DNA topoisomerase 2-bin 96.7 0.0029 1E-07 65.1 7.5 75 205-280 7-83 (235)
188 1tev_A UMP-CMP kinase; ploop, 96.6 0.0013 4.6E-08 64.1 4.8 32 397-428 3-34 (196)
189 3io5_A Recombination and repai 96.6 0.014 4.9E-07 62.5 13.0 105 399-511 30-170 (333)
190 3cm0_A Adenylate kinase; ATP-b 96.6 0.0012 4.2E-08 64.3 4.3 31 398-428 5-35 (186)
191 3dm5_A SRP54, signal recogniti 96.6 0.021 7.3E-07 64.0 14.8 40 396-435 99-141 (443)
192 2vli_A Antibiotic resistance p 96.6 0.0011 3.7E-08 64.4 3.7 30 397-426 5-34 (183)
193 1kht_A Adenylate kinase; phosp 96.6 0.0013 4.4E-08 64.1 4.3 30 398-427 4-38 (192)
194 3umf_A Adenylate kinase; rossm 96.6 0.0015 5.2E-08 66.5 4.9 33 395-427 27-59 (217)
195 1ly1_A Polynucleotide kinase; 96.6 0.00098 3.4E-08 64.3 3.3 30 398-427 3-33 (181)
196 2bwj_A Adenylate kinase 5; pho 96.6 0.0015 5.2E-08 64.1 4.7 32 397-428 12-43 (199)
197 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.015 5E-07 62.9 12.8 99 397-511 171-273 (330)
198 1qf9_A UMP/CMP kinase, protein 96.6 0.0017 5.8E-08 63.2 4.9 32 397-428 6-37 (194)
199 1aky_A Adenylate kinase; ATP:A 96.6 0.0017 5.9E-08 65.3 5.1 32 397-428 4-35 (220)
200 3lda_A DNA repair protein RAD5 96.6 0.0063 2.2E-07 67.5 10.0 37 396-432 177-222 (400)
201 1l0b_A BRCA1; TANDEM-BRCT, thr 96.6 0.0033 1.1E-07 63.9 7.2 78 203-280 116-202 (229)
202 1knq_A Gluconate kinase; ALFA/ 96.5 0.0021 7.3E-08 62.0 5.3 31 397-427 8-38 (175)
203 3kl4_A SRP54, signal recogniti 96.5 0.024 8.3E-07 63.4 14.6 39 396-434 96-137 (433)
204 1ukz_A Uridylate kinase; trans 96.5 0.0019 6.4E-08 64.0 4.9 33 396-428 14-46 (203)
205 2pt5_A Shikimate kinase, SK; a 96.5 0.0021 7.2E-08 61.4 4.9 30 399-428 2-31 (168)
206 4eun_A Thermoresistant glucoki 96.5 0.0022 7.4E-08 63.7 5.1 32 396-427 28-59 (200)
207 3dl0_A Adenylate kinase; phosp 96.5 0.0018 6.3E-08 64.8 4.6 30 399-428 2-31 (216)
208 3be4_A Adenylate kinase; malar 96.5 0.0019 6.6E-08 65.0 4.7 32 397-428 5-36 (217)
209 3cmw_A Protein RECA, recombina 96.5 0.0085 2.9E-07 77.0 11.6 106 395-510 730-866 (1706)
210 1gvn_B Zeta; postsegregational 96.5 0.0039 1.3E-07 66.0 7.3 35 396-430 32-66 (287)
211 3fb4_A Adenylate kinase; psych 96.5 0.002 6.7E-08 64.5 4.7 30 399-428 2-31 (216)
212 1zd8_A GTP:AMP phosphotransfer 96.4 0.002 6.7E-08 65.3 4.5 32 397-428 7-38 (227)
213 2px0_A Flagellar biosynthesis 96.4 0.024 8.1E-07 60.3 13.1 39 396-434 104-146 (296)
214 2eyu_A Twitching motility prot 96.4 0.0048 1.7E-07 64.4 7.5 25 397-421 25-49 (261)
215 2pez_A Bifunctional 3'-phospho 96.4 0.0028 9.5E-08 61.6 5.3 34 397-430 5-41 (179)
216 2i1q_A DNA repair and recombin 96.4 0.0044 1.5E-07 66.3 7.4 25 396-420 97-121 (322)
217 2orv_A Thymidine kinase; TP4A 96.4 0.0077 2.6E-07 61.7 8.5 100 396-512 18-125 (234)
218 1ak2_A Adenylate kinase isoenz 96.4 0.0028 9.6E-08 64.6 5.2 32 397-428 16-47 (233)
219 2ga8_A Hypothetical 39.9 kDa p 96.4 0.00092 3.2E-08 72.8 1.6 36 397-432 24-59 (359)
220 3zvl_A Bifunctional polynucleo 96.3 0.022 7.5E-07 63.4 12.8 33 395-427 256-288 (416)
221 3tlx_A Adenylate kinase 2; str 96.3 0.0027 9.4E-08 65.3 5.0 33 396-428 28-60 (243)
222 1cke_A CK, MSSA, protein (cyti 96.3 0.0028 9.5E-08 63.7 5.0 30 398-427 6-35 (227)
223 3cmu_A Protein RECA, recombina 96.3 0.0086 2.9E-07 77.9 10.5 41 395-435 1079-1122(2050)
224 2p5t_B PEZT; postsegregational 96.3 0.0043 1.5E-07 64.2 6.4 38 396-433 31-68 (253)
225 3bh0_A DNAB-like replicative h 96.3 0.015 5.2E-07 62.2 10.9 36 396-431 67-105 (315)
226 1zp6_A Hypothetical protein AT 96.3 0.002 6.7E-08 63.0 3.6 34 397-430 9-42 (191)
227 1zak_A Adenylate kinase; ATP:A 96.3 0.002 7E-08 64.9 3.7 31 397-427 5-35 (222)
228 2q6t_A DNAB replication FORK h 96.3 0.011 3.9E-07 66.2 10.1 37 396-432 199-239 (444)
229 2pbr_A DTMP kinase, thymidylat 96.3 0.0035 1.2E-07 61.1 5.2 32 399-430 2-36 (195)
230 1kzy_C Tumor suppressor P53-bi 96.2 0.011 3.9E-07 61.6 9.2 79 202-280 153-241 (259)
231 2jaq_A Deoxyguanosine kinase; 96.2 0.0033 1.1E-07 61.8 4.7 28 399-426 2-29 (205)
232 1w36_D RECD, exodeoxyribonucle 96.2 0.0074 2.5E-07 70.6 8.3 25 397-421 164-188 (608)
233 1e4v_A Adenylate kinase; trans 96.2 0.0031 1.1E-07 63.2 4.4 30 399-428 2-31 (214)
234 3llm_A ATP-dependent RNA helic 96.2 0.019 6.5E-07 58.4 10.4 22 397-418 76-97 (235)
235 1nks_A Adenylate kinase; therm 96.2 0.0021 7.3E-08 62.5 3.0 25 398-422 2-26 (194)
236 3uie_A Adenylyl-sulfate kinase 96.1 0.0048 1.6E-07 61.2 5.5 34 396-429 24-60 (200)
237 2if2_A Dephospho-COA kinase; a 96.1 0.0027 9.4E-08 62.8 3.6 30 399-429 3-32 (204)
238 1t15_A Breast cancer type 1 su 96.1 0.0069 2.4E-07 60.7 6.5 79 202-280 113-200 (214)
239 2v54_A DTMP kinase, thymidylat 96.1 0.0035 1.2E-07 61.8 4.3 34 397-430 4-38 (204)
240 2z0h_A DTMP kinase, thymidylat 96.1 0.0041 1.4E-07 60.8 4.7 32 399-430 2-36 (197)
241 2xb4_A Adenylate kinase; ATP-b 96.1 0.0042 1.4E-07 62.9 4.8 30 399-428 2-31 (223)
242 4a1f_A DNAB helicase, replicat 96.1 0.017 5.8E-07 62.6 9.8 38 395-432 44-84 (338)
243 2ewv_A Twitching motility prot 96.1 0.0086 2.9E-07 65.8 7.6 25 397-421 136-160 (372)
244 3r20_A Cytidylate kinase; stru 96.1 0.0045 1.5E-07 63.6 4.9 32 397-428 9-40 (233)
245 3sqd_A PAX-interacting protein 96.1 0.01 3.4E-07 60.4 7.5 76 203-279 121-208 (219)
246 2etx_A Mediator of DNA damage 96.1 0.013 4.3E-07 59.1 8.2 77 203-280 114-192 (209)
247 3nwj_A ATSK2; P loop, shikimat 96.0 0.0045 1.5E-07 64.3 4.7 32 397-428 48-79 (250)
248 3ake_A Cytidylate kinase; CMP 96.0 0.0051 1.8E-07 60.7 4.9 30 399-428 4-33 (208)
249 2bbw_A Adenylate kinase 4, AK4 96.0 0.0048 1.6E-07 63.3 4.6 31 397-427 27-57 (246)
250 3b6e_A Interferon-induced heli 96.0 0.028 9.5E-07 55.4 10.1 34 398-431 49-91 (216)
251 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.006 2E-07 63.4 5.3 33 397-429 4-39 (260)
252 1tf7_A KAIC; homohexamer, hexa 95.9 0.017 5.7E-07 66.3 9.5 109 396-513 280-417 (525)
253 1jjv_A Dephospho-COA kinase; P 95.9 0.0046 1.6E-07 61.4 4.1 30 398-428 3-32 (206)
254 2plr_A DTMP kinase, probable t 95.9 0.0049 1.7E-07 60.9 4.1 32 397-428 4-37 (213)
255 4e22_A Cytidylate kinase; P-lo 95.9 0.0065 2.2E-07 62.8 5.2 31 397-427 27-57 (252)
256 3bgw_A DNAB-like replicative h 95.9 0.038 1.3E-06 62.1 11.8 38 395-432 195-235 (444)
257 2v3c_C SRP54, signal recogniti 95.9 0.031 1.1E-06 62.6 11.0 39 396-434 98-139 (432)
258 1vma_A Cell division protein F 95.8 0.027 9.1E-07 60.2 9.9 39 396-434 103-144 (306)
259 1q57_A DNA primase/helicase; d 95.8 0.025 8.5E-07 64.4 10.3 38 395-432 240-281 (503)
260 1uf9_A TT1252 protein; P-loop, 95.8 0.0058 2E-07 60.0 4.2 32 396-428 7-38 (203)
261 1mv5_A LMRA, multidrug resista 95.8 0.032 1.1E-06 57.4 9.9 26 396-421 27-52 (243)
262 3a8t_A Adenylate isopentenyltr 95.8 0.0043 1.5E-07 67.1 3.3 34 397-430 40-73 (339)
263 3e2i_A Thymidine kinase; Zn-bi 95.8 0.012 4.1E-07 59.6 6.3 102 396-511 27-136 (219)
264 2grj_A Dephospho-COA kinase; T 95.7 0.0073 2.5E-07 60.1 4.7 32 397-428 12-43 (192)
265 2wwf_A Thymidilate kinase, put 95.7 0.0034 1.2E-07 62.3 2.3 27 397-423 10-36 (212)
266 2zts_A Putative uncharacterize 95.7 0.019 6.6E-07 58.0 7.7 36 396-431 29-68 (251)
267 1q3t_A Cytidylate kinase; nucl 95.6 0.0092 3.2E-07 60.8 5.1 34 395-428 14-47 (236)
268 2qor_A Guanylate kinase; phosp 95.6 0.0063 2.2E-07 60.5 3.7 27 396-422 11-37 (204)
269 1vht_A Dephospho-COA kinase; s 95.6 0.0085 2.9E-07 60.0 4.7 31 397-428 4-34 (218)
270 1kgd_A CASK, peripheral plasma 95.6 0.0077 2.6E-07 58.7 4.1 26 397-422 5-30 (180)
271 1rz3_A Hypothetical protein rb 95.6 0.022 7.7E-07 56.4 7.6 34 396-429 21-57 (201)
272 3t1o_A Gliding protein MGLA; G 95.6 0.026 8.7E-07 54.5 7.8 25 397-421 14-38 (198)
273 2yvu_A Probable adenylyl-sulfa 95.5 0.013 4.5E-07 57.1 5.4 34 396-429 12-48 (186)
274 1uj2_A Uridine-cytidine kinase 95.5 0.0082 2.8E-07 61.9 4.1 28 397-424 22-49 (252)
275 2h92_A Cytidylate kinase; ross 95.5 0.01 3.4E-07 59.4 4.6 31 398-428 4-34 (219)
276 1svm_A Large T antigen; AAA+ f 95.5 0.01 3.5E-07 65.3 5.0 36 396-431 168-203 (377)
277 2bdt_A BH3686; alpha-beta prot 95.5 0.0094 3.2E-07 58.2 4.2 26 398-423 3-28 (189)
278 1nn5_A Similar to deoxythymidy 95.4 0.0073 2.5E-07 59.9 3.2 32 397-428 9-43 (215)
279 3tau_A Guanylate kinase, GMP k 95.4 0.0082 2.8E-07 60.1 3.5 27 396-422 7-33 (208)
280 3l41_A BRCT-containing protein 95.3 0.0058 2E-07 62.2 2.3 71 205-280 6-76 (220)
281 1ltq_A Polynucleotide kinase; 95.3 0.0094 3.2E-07 62.8 3.9 30 398-427 3-33 (301)
282 2f6r_A COA synthase, bifunctio 95.3 0.012 4.2E-07 61.9 4.7 32 396-428 74-105 (281)
283 3a00_A Guanylate kinase, GMP k 95.3 0.0092 3.2E-07 58.4 3.4 25 398-422 2-26 (186)
284 3d3q_A TRNA delta(2)-isopenten 95.3 0.01 3.5E-07 64.3 4.0 32 398-429 8-39 (340)
285 2qt1_A Nicotinamide riboside k 95.2 0.0069 2.4E-07 60.2 2.5 34 396-429 20-54 (207)
286 3fdi_A Uncharacterized protein 95.2 0.013 4.3E-07 58.7 4.5 30 398-427 7-36 (201)
287 1z0f_A RAB14, member RAS oncog 95.2 0.026 8.7E-07 53.5 6.4 25 397-421 15-39 (179)
288 3tr0_A Guanylate kinase, GMP k 95.2 0.012 4.1E-07 58.0 4.2 26 397-422 7-32 (205)
289 2j41_A Guanylate kinase; GMP, 95.2 0.01 3.5E-07 58.5 3.4 25 397-421 6-30 (207)
290 1vec_A ATP-dependent RNA helic 95.2 0.066 2.3E-06 52.5 9.4 40 472-512 146-186 (206)
291 3u3z_A Microcephalin; DNA repa 95.1 0.025 8.7E-07 56.5 6.3 70 203-280 118-187 (199)
292 3nh6_A ATP-binding cassette SU 95.1 0.034 1.2E-06 59.4 7.5 27 396-422 79-105 (306)
293 4b3f_X DNA-binding protein smu 95.1 0.029 1E-06 66.0 7.6 47 361-429 191-240 (646)
294 3e70_C DPA, signal recognition 95.1 0.085 2.9E-06 56.8 10.6 35 396-430 128-165 (328)
295 1hv8_A Putative ATP-dependent 95.1 0.13 4.3E-06 54.8 11.9 33 398-430 45-82 (367)
296 1m7g_A Adenylylsulfate kinase; 95.0 0.017 5.7E-07 57.7 4.5 34 396-429 24-61 (211)
297 1tf7_A KAIC; homohexamer, hexa 95.0 0.044 1.5E-06 62.8 8.6 112 396-512 38-184 (525)
298 4dkx_A RAS-related protein RAB 95.0 0.033 1.1E-06 56.3 6.6 22 399-420 15-36 (216)
299 1ls1_A Signal recognition part 94.9 0.12 4E-06 54.8 11.1 37 396-432 97-136 (295)
300 3ney_A 55 kDa erythrocyte memb 94.9 0.016 5.4E-07 58.0 4.0 27 396-422 18-44 (197)
301 3lxw_A GTPase IMAP family memb 94.9 0.61 2.1E-05 47.6 16.2 24 397-420 21-44 (247)
302 1qde_A EIF4A, translation init 94.9 0.073 2.5E-06 53.1 8.9 40 472-512 155-195 (224)
303 3asz_A Uridine kinase; cytidin 94.9 0.015 5.2E-07 57.7 3.7 31 397-427 6-38 (211)
304 1lvg_A Guanylate kinase, GMP k 94.8 0.015 5E-07 57.8 3.5 26 397-422 4-29 (198)
305 1z0j_A RAB-22, RAS-related pro 94.8 0.025 8.5E-07 53.1 5.0 24 398-421 7-30 (170)
306 3eph_A TRNA isopentenyltransfe 94.8 0.016 5.4E-07 64.2 3.9 31 398-428 3-33 (409)
307 2gza_A Type IV secretion syste 94.8 0.17 5.8E-06 55.1 12.2 33 397-429 175-209 (361)
308 2gxq_A Heat resistant RNA depe 94.8 0.091 3.1E-06 51.5 9.2 40 472-512 144-184 (207)
309 1nrj_B SR-beta, signal recogni 94.8 0.099 3.4E-06 51.7 9.5 26 396-421 11-36 (218)
310 3dz8_A RAS-related protein RAB 94.7 0.028 9.5E-07 54.6 5.2 25 397-421 23-47 (191)
311 3c8u_A Fructokinase; YP_612366 94.7 0.019 6.3E-07 57.3 4.0 27 396-422 21-47 (208)
312 3tkl_A RAS-related protein RAB 94.7 0.028 9.7E-07 54.4 5.1 25 397-421 16-40 (196)
313 2p5s_A RAS and EF-hand domain 94.7 0.031 1.1E-06 54.7 5.5 25 396-420 27-51 (199)
314 1kao_A RAP2A; GTP-binding prot 94.6 0.047 1.6E-06 50.8 6.3 23 398-420 4-26 (167)
315 3vkw_A Replicase large subunit 94.6 0.03 1E-06 62.7 5.5 103 395-512 159-269 (446)
316 2nte_A BARD-1, BRCA1-associate 94.6 0.034 1.2E-06 55.7 5.5 78 202-280 102-203 (210)
317 3ly5_A ATP-dependent RNA helic 94.5 0.095 3.2E-06 54.2 9.0 40 472-512 201-241 (262)
318 1t6n_A Probable ATP-dependent 94.5 0.061 2.1E-06 53.5 7.3 33 398-430 52-90 (220)
319 2efe_B Small GTP-binding prote 94.5 0.038 1.3E-06 52.6 5.6 23 398-420 13-35 (181)
320 1wms_A RAB-9, RAB9, RAS-relate 94.5 0.033 1.1E-06 52.8 5.0 24 397-420 7-30 (177)
321 1odf_A YGR205W, hypothetical 3 94.4 0.05 1.7E-06 57.6 6.7 27 396-422 30-56 (290)
322 2fwr_A DNA repair protein RAD2 94.4 0.095 3.3E-06 58.6 9.5 34 398-431 109-142 (472)
323 2fg5_A RAB-22B, RAS-related pr 94.4 0.048 1.6E-06 53.0 6.1 24 397-420 23-46 (192)
324 3iuy_A Probable ATP-dependent 94.4 0.12 4.1E-06 51.8 9.2 40 472-512 167-207 (228)
325 3hdt_A Putative kinase; struct 94.4 0.027 9.1E-07 57.4 4.3 30 398-427 15-44 (223)
326 2bme_A RAB4A, RAS-related prot 94.4 0.027 9.3E-07 54.0 4.1 24 397-420 10-33 (186)
327 1p9r_A General secretion pathw 94.3 0.047 1.6E-06 60.9 6.5 50 352-422 143-192 (418)
328 1rif_A DAR protein, DNA helica 94.3 0.1 3.6E-06 54.2 8.8 32 399-430 130-165 (282)
329 3fe2_A Probable ATP-dependent 94.3 0.094 3.2E-06 53.2 8.2 40 472-512 176-216 (242)
330 2oil_A CATX-8, RAS-related pro 94.3 0.038 1.3E-06 53.5 5.1 24 397-420 25-48 (193)
331 2il1_A RAB12; G-protein, GDP, 94.3 0.036 1.2E-06 54.0 4.9 22 398-419 27-48 (192)
332 1znw_A Guanylate kinase, GMP k 94.3 0.027 9.2E-07 56.0 3.9 27 396-422 19-45 (207)
333 1wb9_A DNA mismatch repair pro 94.3 0.18 6.2E-06 60.7 11.8 25 396-420 606-630 (800)
334 3b5x_A Lipid A export ATP-bind 94.2 0.13 4.4E-06 59.8 10.2 26 396-421 368-393 (582)
335 1s96_A Guanylate kinase, GMP k 94.2 0.028 9.6E-07 57.0 4.0 27 396-422 15-41 (219)
336 3thx_A DNA mismatch repair pro 94.2 0.17 5.7E-06 62.0 11.5 23 396-418 661-683 (934)
337 2yhs_A FTSY, cell division pro 94.2 0.14 4.7E-06 58.2 9.9 26 396-421 292-317 (503)
338 1ek0_A Protein (GTP-binding pr 94.2 0.048 1.7E-06 51.0 5.4 24 398-421 4-27 (170)
339 2qmh_A HPR kinase/phosphorylas 94.2 0.026 8.7E-07 56.6 3.4 29 397-426 34-62 (205)
340 3dkp_A Probable ATP-dependent 94.1 0.068 2.3E-06 54.2 6.8 41 472-512 175-219 (245)
341 1z6g_A Guanylate kinase; struc 94.1 0.026 9E-07 56.9 3.6 26 396-421 22-47 (218)
342 1r2q_A RAS-related protein RAB 94.1 0.051 1.7E-06 50.8 5.4 23 398-420 7-29 (170)
343 3llu_A RAS-related GTP-binding 94.1 0.21 7.2E-06 48.6 10.0 25 396-420 19-43 (196)
344 1a7j_A Phosphoribulokinase; tr 94.1 0.016 5.6E-07 61.3 2.0 26 397-422 5-30 (290)
345 2y8e_A RAB-protein 6, GH09086P 94.1 0.046 1.6E-06 51.7 5.0 23 398-420 15-37 (179)
346 1r8s_A ADP-ribosylation factor 94.0 0.2 6.7E-06 46.7 9.3 23 399-421 2-24 (164)
347 2hup_A RAS-related protein RAB 94.0 0.066 2.3E-06 52.6 6.2 24 397-420 29-52 (201)
348 1gtv_A TMK, thymidylate kinase 93.9 0.014 4.9E-07 57.8 1.1 24 399-422 2-25 (214)
349 4gp7_A Metallophosphoesterase; 93.9 0.03 1E-06 54.0 3.4 22 397-418 9-30 (171)
350 4eaq_A DTMP kinase, thymidylat 93.9 0.037 1.2E-06 56.4 4.2 33 396-428 25-59 (229)
351 1htw_A HI0065; nucleotide-bind 93.9 0.038 1.3E-06 53.1 4.0 25 397-421 33-57 (158)
352 3bc1_A RAS-related protein RAB 93.9 0.078 2.7E-06 50.7 6.3 24 397-420 11-34 (195)
353 1zu4_A FTSY; GTPase, signal re 93.8 0.14 4.8E-06 54.9 8.8 38 395-432 103-143 (320)
354 3thx_B DNA mismatch repair pro 93.8 0.11 3.9E-06 63.3 9.0 24 396-419 672-695 (918)
355 3gmt_A Adenylate kinase; ssgci 93.8 0.041 1.4E-06 56.3 4.4 31 398-428 9-39 (230)
356 1x6v_B Bifunctional 3'-phospho 93.8 0.047 1.6E-06 63.8 5.4 35 396-430 51-88 (630)
357 3pqc_A Probable GTP-binding pr 93.8 0.25 8.5E-06 47.3 9.8 25 396-420 22-46 (195)
358 2v6i_A RNA helicase; membrane, 93.8 0.074 2.5E-06 59.3 6.8 34 398-431 3-40 (431)
359 1z06_A RAS-related protein RAB 93.8 0.06 2.1E-06 52.0 5.3 24 397-420 20-43 (189)
360 3pey_A ATP-dependent RNA helic 93.8 0.16 5.5E-06 54.5 9.3 23 397-419 44-66 (395)
361 1z2a_A RAS-related protein RAB 93.8 0.046 1.6E-06 51.1 4.3 23 398-420 6-28 (168)
362 2jeo_A Uridine-cytidine kinase 93.7 0.041 1.4E-06 56.3 4.1 28 397-424 25-52 (245)
363 3bor_A Human initiation factor 93.7 0.099 3.4E-06 52.9 7.0 40 472-512 173-213 (237)
364 1z08_A RAS-related protein RAB 93.7 0.037 1.3E-06 52.0 3.5 23 398-420 7-29 (170)
365 2ius_A DNA translocase FTSK; n 93.7 0.16 5.6E-06 57.9 9.3 71 473-543 298-374 (512)
366 1g16_A RAS-related protein SEC 93.6 0.04 1.4E-06 51.7 3.6 23 398-420 4-26 (170)
367 3lxx_A GTPase IMAP family memb 93.6 0.21 7.1E-06 50.5 9.2 25 397-421 29-53 (239)
368 2j37_W Signal recognition part 93.6 0.28 9.5E-06 55.9 11.1 40 396-435 100-142 (504)
369 2wsm_A Hydrogenase expression/ 93.5 0.053 1.8E-06 53.9 4.5 26 397-422 30-55 (221)
370 2z0m_A 337AA long hypothetical 93.5 0.12 4.1E-06 54.3 7.5 34 398-431 32-65 (337)
371 1s2m_A Putative ATP-dependent 93.5 0.17 5.7E-06 54.9 8.8 22 398-419 59-80 (400)
372 3lnc_A Guanylate kinase, GMP k 93.5 0.028 9.6E-07 56.8 2.4 27 396-422 26-53 (231)
373 3b60_A Lipid A export ATP-bind 93.4 0.14 4.7E-06 59.5 8.4 27 396-422 368-394 (582)
374 2ew1_A RAS-related protein RAB 93.4 0.05 1.7E-06 53.8 4.1 24 397-420 26-49 (201)
375 4dsu_A GTPase KRAS, isoform 2B 93.4 0.072 2.5E-06 50.9 5.1 24 398-421 5-28 (189)
376 2iut_A DNA translocase FTSK; n 93.4 0.19 6.6E-06 57.9 9.3 25 397-421 214-238 (574)
377 2pl3_A Probable ATP-dependent 93.4 0.16 5.6E-06 51.0 7.9 40 472-512 171-211 (236)
378 1c1y_A RAS-related protein RAP 93.4 0.11 3.9E-06 48.3 6.3 23 398-420 4-26 (167)
379 2a9k_A RAS-related protein RAL 93.4 0.11 3.7E-06 49.5 6.2 24 397-420 18-41 (187)
380 1xjc_A MOBB protein homolog; s 93.3 0.083 2.8E-06 51.4 5.3 33 397-429 4-39 (169)
381 3h1t_A Type I site-specific re 93.3 0.27 9.3E-06 56.8 10.7 45 359-421 178-222 (590)
382 1ky3_A GTP-binding protein YPT 93.3 0.073 2.5E-06 50.4 4.9 24 397-420 8-31 (182)
383 3cph_A RAS-related protein SEC 93.3 0.06 2E-06 52.8 4.4 24 397-420 20-43 (213)
384 1u8z_A RAS-related protein RAL 93.3 0.11 3.6E-06 48.4 5.9 23 398-420 5-27 (168)
385 4djt_A GTP-binding nuclear pro 93.3 0.024 8.1E-07 56.3 1.4 23 397-419 11-33 (218)
386 2a5j_A RAS-related protein RAB 93.3 0.057 1.9E-06 52.3 4.1 24 397-420 21-44 (191)
387 1zbd_A Rabphilin-3A; G protein 93.2 0.051 1.8E-06 53.1 3.8 24 397-420 8-31 (203)
388 2zj8_A DNA helicase, putative 93.1 0.23 8E-06 58.9 10.0 40 472-512 138-178 (720)
389 1zd9_A ADP-ribosylation factor 93.1 0.23 7.7E-06 47.9 8.2 24 397-420 22-45 (188)
390 1wrb_A DJVLGB; RNA helicase, D 93.1 0.21 7.2E-06 50.8 8.4 41 472-512 174-218 (253)
391 2xgj_A ATP-dependent RNA helic 93.1 0.36 1.2E-05 59.7 11.8 108 398-512 102-232 (1010)
392 2va8_A SSO2462, SKI2-type heli 93.1 0.23 7.7E-06 58.9 9.7 34 397-430 46-83 (715)
393 3p32_A Probable GTPase RV1496/ 93.1 0.036 1.2E-06 60.2 2.6 87 343-429 20-114 (355)
394 1rj9_A FTSY, signal recognitio 93.0 0.063 2.2E-06 57.2 4.4 26 396-421 101-126 (304)
395 1fzq_A ADP-ribosylation factor 93.0 0.14 4.8E-06 49.3 6.5 24 397-420 16-39 (181)
396 2g6b_A RAS-related protein RAB 93.0 0.061 2.1E-06 51.1 3.9 24 397-420 10-33 (180)
397 2gf9_A RAS-related protein RAB 93.0 0.051 1.8E-06 52.5 3.3 24 397-420 22-45 (189)
398 2ce2_X GTPase HRAS; signaling 92.9 0.12 4.2E-06 47.7 5.8 23 399-421 5-27 (166)
399 4a4z_A Antiviral helicase SKI2 92.9 0.31 1.1E-05 60.2 10.9 40 472-512 147-187 (997)
400 4edh_A DTMP kinase, thymidylat 92.8 0.092 3.2E-06 52.9 5.1 33 397-429 6-41 (213)
401 2xau_A PRE-mRNA-splicing facto 92.8 0.3 1E-05 58.6 10.4 24 397-420 109-132 (773)
402 1yks_A Genome polyprotein [con 92.8 0.13 4.5E-06 57.4 6.8 34 397-430 8-45 (440)
403 2bov_A RAla, RAS-related prote 92.8 0.14 4.9E-06 49.7 6.3 24 397-420 14-37 (206)
404 3tqc_A Pantothenate kinase; bi 92.8 0.07 2.4E-06 57.3 4.3 27 396-422 91-117 (321)
405 1upt_A ARL1, ADP-ribosylation 92.8 0.15 5.1E-06 47.7 6.2 24 397-420 7-30 (171)
406 2ocp_A DGK, deoxyguanosine kin 92.8 0.072 2.4E-06 54.2 4.2 27 397-423 2-29 (241)
407 2v9p_A Replication protein E1; 92.8 0.066 2.3E-06 57.1 4.1 30 396-425 125-154 (305)
408 4a82_A Cystic fibrosis transme 92.8 0.2 6.7E-06 58.1 8.4 27 396-422 366-392 (578)
409 3ber_A Probable ATP-dependent 92.8 0.28 9.4E-06 50.2 8.7 40 472-512 186-226 (249)
410 3kkq_A RAS-related protein M-R 92.7 0.11 3.7E-06 49.6 5.2 24 397-420 18-41 (183)
411 1np6_A Molybdopterin-guanine d 92.7 0.07 2.4E-06 52.1 3.9 32 397-428 6-40 (174)
412 2oca_A DAR protein, ATP-depend 92.7 0.55 1.9E-05 52.9 11.9 34 398-431 129-166 (510)
413 3clv_A RAB5 protein, putative; 92.7 0.12 4.1E-06 49.7 5.5 24 397-420 7-30 (208)
414 2oap_1 GSPE-2, type II secreti 92.7 0.062 2.1E-06 61.5 3.9 33 397-429 260-294 (511)
415 2z83_A Helicase/nucleoside tri 92.6 0.067 2.3E-06 60.2 4.1 35 397-431 21-59 (459)
416 3aez_A Pantothenate kinase; tr 92.6 0.071 2.4E-06 57.0 4.0 26 396-421 89-114 (312)
417 1sq5_A Pantothenate kinase; P- 92.6 0.064 2.2E-06 57.1 3.7 26 397-422 80-105 (308)
418 1wp9_A ATP-dependent RNA helic 92.6 0.72 2.5E-05 50.4 12.4 33 399-431 25-61 (494)
419 2gk6_A Regulator of nonsense t 92.6 0.092 3.1E-06 61.5 5.3 24 398-421 196-219 (624)
420 3tqf_A HPR(Ser) kinase; transf 92.6 0.081 2.8E-06 51.8 4.0 28 397-425 16-43 (181)
421 1g8f_A Sulfate adenylyltransfe 92.6 0.086 2.9E-06 60.2 4.9 27 397-423 395-421 (511)
422 2hf9_A Probable hydrogenase ni 92.5 0.12 4.2E-06 51.4 5.5 25 397-421 38-62 (226)
423 3v9p_A DTMP kinase, thymidylat 92.5 0.1 3.5E-06 53.2 4.9 33 397-429 25-64 (227)
424 3qf4_B Uncharacterized ABC tra 92.5 0.19 6.6E-06 58.4 7.8 27 396-422 380-406 (598)
425 2o52_A RAS-related protein RAB 92.4 0.053 1.8E-06 53.2 2.6 23 397-419 25-47 (200)
426 2fh5_B SR-beta, signal recogni 92.4 0.3 1E-05 48.0 8.1 25 397-421 7-31 (214)
427 1m2o_B GTP-binding protein SAR 92.4 0.092 3.1E-06 51.1 4.3 23 398-420 24-46 (190)
428 2yl4_A ATP-binding cassette SU 92.4 0.27 9.1E-06 57.2 8.9 27 396-422 369-395 (595)
429 2axn_A 6-phosphofructo-2-kinas 92.4 0.11 3.6E-06 59.6 5.4 36 396-431 34-72 (520)
430 1x3s_A RAS-related protein RAB 92.4 0.066 2.2E-06 51.6 3.2 24 397-420 15-38 (195)
431 3b9q_A Chloroplast SRP recepto 92.4 0.081 2.8E-06 56.3 4.1 36 396-432 99-137 (302)
432 1p5z_B DCK, deoxycytidine kina 92.4 0.035 1.2E-06 57.4 1.2 30 396-425 23-53 (263)
433 1xti_A Probable ATP-dependent 92.3 0.25 8.6E-06 53.1 8.1 34 398-431 46-85 (391)
434 2xxa_A Signal recognition part 92.3 0.63 2.2E-05 52.0 11.4 40 396-435 99-142 (433)
435 2atv_A RERG, RAS-like estrogen 92.3 0.25 8.7E-06 47.8 7.3 24 397-420 28-51 (196)
436 3tif_A Uncharacterized ABC tra 92.3 0.068 2.3E-06 54.7 3.2 26 396-421 30-55 (235)
437 2bcg_Y Protein YP2, GTP-bindin 92.2 0.057 1.9E-06 52.9 2.5 24 397-420 8-31 (206)
438 1m8p_A Sulfate adenylyltransfe 92.2 0.094 3.2E-06 60.8 4.7 34 396-429 395-432 (573)
439 3kta_A Chromosome segregation 92.1 0.091 3.1E-06 50.6 3.8 26 397-422 26-51 (182)
440 1ewq_A DNA mismatch repair pro 92.1 0.42 1.4E-05 57.3 10.2 24 397-420 576-599 (765)
441 4i1u_A Dephospho-COA kinase; s 91.9 0.12 4.2E-06 52.0 4.6 32 397-429 9-40 (210)
442 2whx_A Serine protease/ntpase/ 91.9 0.45 1.6E-05 55.6 10.1 42 471-512 276-317 (618)
443 2pcj_A ABC transporter, lipopr 91.9 0.072 2.5E-06 54.0 2.9 26 396-421 29-54 (224)
444 2j0s_A ATP-dependent RNA helic 91.9 0.38 1.3E-05 52.3 8.9 22 398-419 75-96 (410)
445 3fmo_B ATP-dependent RNA helic 91.9 0.41 1.4E-05 50.5 8.9 19 397-415 131-149 (300)
446 2cbz_A Multidrug resistance-as 91.8 0.081 2.8E-06 54.2 3.2 26 396-421 30-55 (237)
447 3b85_A Phosphate starvation-in 91.8 0.081 2.8E-06 53.1 3.1 24 397-420 22-45 (208)
448 2ffh_A Protein (FFH); SRP54, s 91.8 0.85 2.9E-05 50.8 11.7 36 396-431 97-135 (425)
449 3eiq_A Eukaryotic initiation f 91.8 0.17 5.8E-06 55.0 5.9 21 398-418 78-98 (414)
450 3l9o_A ATP-dependent RNA helic 91.8 0.26 8.8E-06 61.6 8.2 34 398-431 200-236 (1108)
451 2fu5_C RAS-related protein RAB 91.7 0.045 1.5E-06 52.3 1.1 24 397-420 8-31 (183)
452 2jlq_A Serine protease subunit 91.7 0.28 9.6E-06 54.9 7.8 34 397-430 19-56 (451)
453 1z56_C DNA ligase IV; DNA repa 91.7 0.02 6.9E-07 59.6 -1.6 77 202-280 3-90 (264)
454 2onk_A Molybdate/tungstate ABC 91.7 0.1 3.4E-06 53.6 3.7 24 398-421 25-48 (240)
455 3qf4_A ABC transporter, ATP-bi 91.7 0.35 1.2E-05 56.2 8.7 27 396-422 368-394 (587)
456 2og2_A Putative signal recogni 91.6 0.11 3.7E-06 56.7 4.1 37 396-433 156-195 (359)
457 2o8b_B DNA mismatch repair pro 91.6 0.17 5.8E-06 62.5 6.3 22 397-418 789-810 (1022)
458 1c9k_A COBU, adenosylcobinamid 91.6 0.098 3.4E-06 51.4 3.3 31 400-431 2-32 (180)
459 1zj6_A ADP-ribosylation factor 91.6 0.25 8.6E-06 47.4 6.3 23 397-419 16-38 (187)
460 1b0u_A Histidine permease; ABC 91.5 0.092 3.2E-06 54.6 3.3 26 396-421 31-56 (262)
461 3b1v_A Ferrous iron uptake tra 91.5 0.66 2.3E-05 48.3 9.8 23 398-420 4-26 (272)
462 3cpj_B GTP-binding protein YPT 91.4 0.076 2.6E-06 53.0 2.4 23 398-420 14-36 (223)
463 2ep8_A Pescadillo homolog 1; A 91.4 0.56 1.9E-05 41.4 7.8 71 202-280 10-91 (100)
464 3fvq_A Fe(3+) IONS import ATP- 91.3 0.1 3.4E-06 57.0 3.4 26 396-421 29-54 (359)
465 2zu0_C Probable ATP-dependent 91.3 0.12 3.9E-06 54.0 3.8 25 396-420 45-69 (267)
466 3tmk_A Thymidylate kinase; pho 91.3 0.18 6.1E-06 51.0 5.1 29 397-425 5-33 (216)
467 2wjy_A Regulator of nonsense t 91.3 0.15 5.3E-06 61.4 5.4 24 398-421 372-395 (800)
468 3iby_A Ferrous iron transport 91.3 0.76 2.6E-05 47.3 10.0 23 398-420 2-24 (256)
469 3fmp_B ATP-dependent RNA helic 91.3 0.34 1.1E-05 54.3 7.8 19 397-415 131-149 (479)
470 2f1r_A Molybdopterin-guanine d 91.2 0.062 2.1E-06 52.3 1.4 24 398-421 3-26 (171)
471 2d2e_A SUFC protein; ABC-ATPas 91.1 0.12 4E-06 53.3 3.6 25 396-420 28-52 (250)
472 1sgw_A Putative ABC transporte 91.1 0.095 3.2E-06 52.9 2.8 26 396-421 34-59 (214)
473 2olj_A Amino acid ABC transpor 91.1 0.11 3.7E-06 54.2 3.3 26 396-421 49-74 (263)
474 1mky_A Probable GTP-binding pr 91.1 2.3 8E-05 47.2 14.4 24 397-420 180-203 (439)
475 2pze_A Cystic fibrosis transme 91.0 0.11 3.7E-06 52.9 3.1 26 396-421 33-58 (229)
476 1g6h_A High-affinity branched- 91.0 0.11 3.6E-06 53.9 3.1 26 396-421 32-57 (257)
477 1ji0_A ABC transporter; ATP bi 91.0 0.11 3.7E-06 53.3 3.1 26 396-421 31-56 (240)
478 2h57_A ADP-ribosylation factor 91.0 0.13 4.5E-06 49.6 3.6 25 397-421 21-45 (190)
479 2it1_A 362AA long hypothetical 90.9 0.13 4.3E-06 56.2 3.8 26 396-421 28-53 (362)
480 3gfo_A Cobalt import ATP-bindi 90.9 0.11 3.7E-06 54.5 3.1 26 396-421 33-58 (275)
481 2ixe_A Antigen peptide transpo 90.9 0.11 3.8E-06 54.3 3.2 26 396-421 44-69 (271)
482 3rlf_A Maltose/maltodextrin im 90.9 0.13 4.4E-06 56.6 3.8 26 396-421 28-53 (381)
483 2ff7_A Alpha-hemolysin translo 90.9 0.11 3.8E-06 53.5 3.1 26 396-421 34-59 (247)
484 2ghi_A Transport protein; mult 90.9 0.11 3.9E-06 53.9 3.2 26 396-421 45-70 (260)
485 3sop_A Neuronal-specific septi 90.9 0.12 4E-06 54.1 3.3 23 399-421 4-26 (270)
486 2yyz_A Sugar ABC transporter, 90.9 0.13 4.4E-06 56.1 3.7 26 396-421 28-53 (359)
487 3fho_A ATP-dependent RNA helic 90.8 0.35 1.2E-05 54.9 7.5 25 397-421 158-183 (508)
488 1gm5_A RECG; helicase, replica 90.8 0.33 1.1E-05 58.3 7.5 36 396-431 388-426 (780)
489 3a1s_A Iron(II) transport prot 90.8 1 3.5E-05 46.4 10.4 22 398-419 6-27 (258)
490 1v43_A Sugar-binding transport 90.8 0.13 4.6E-06 56.3 3.8 26 396-421 36-61 (372)
491 1fuu_A Yeast initiation factor 90.8 0.42 1.4E-05 51.4 7.7 42 471-513 161-203 (394)
492 1z47_A CYSA, putative ABC-tran 90.8 0.13 4.4E-06 56.0 3.6 26 396-421 40-65 (355)
493 1vpl_A ABC transporter, ATP-bi 90.7 0.12 4.2E-06 53.5 3.3 26 396-421 40-65 (256)
494 4g1u_C Hemin import ATP-bindin 90.7 0.12 4.2E-06 53.8 3.2 26 396-421 36-61 (266)
495 2qi9_C Vitamin B12 import ATP- 90.6 0.12 4.2E-06 53.3 3.1 25 397-421 26-50 (249)
496 3lv8_A DTMP kinase, thymidylat 90.6 0.15 5.2E-06 52.3 3.8 28 397-424 27-57 (236)
497 2yz2_A Putative ABC transporte 90.6 0.13 4.3E-06 53.7 3.2 26 396-421 32-57 (266)
498 2f9l_A RAB11B, member RAS onco 90.5 0.14 4.7E-06 50.0 3.3 23 398-420 6-28 (199)
499 2ihy_A ABC transporter, ATP-bi 90.5 0.13 4.3E-06 54.2 3.1 26 396-421 46-71 (279)
500 1g29_1 MALK, maltose transport 90.4 0.14 4.9E-06 56.1 3.6 26 396-421 28-53 (372)
No 1
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.5e-59 Score=543.18 Aligned_cols=431 Identities=32% Similarity=0.523 Sum_probs=354.9
Q ss_pred CCccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHH
Q 003873 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQ 419 (790)
Q Consensus 340 ~~~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAk 419 (790)
...+++|++||+|++++||+|++..++.|..||..|..... .+.+..+. .+....+++||+||||||||++|+++|+
T Consensus 23 ~~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~-~~~~~~g~--~~~~~~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 23 MASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKK-NSFKHAGK--DGSGVFRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp ---CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHH-TTTCCCCT--TSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhch-hhccccCc--cCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999999999999999976431 12222221 1123568999999999999999999999
Q ss_pred HhCCcEEEEeCCCCCCchhhhhhcccCCC-chhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHH
Q 003873 420 MLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIAS 498 (790)
Q Consensus 420 elg~~iiEinaSd~rsk~~~~i~~~~g~s-~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~ 498 (790)
++++.++++|+++.++... +...+... ....+..++..... .......+.||||||+|.|...+++++..|+..
T Consensus 100 ~l~~~~i~in~s~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~ 174 (516)
T 1sxj_A 100 ELGYDILEQNASDVRSKTL--LNAGVKNALDNMSVVGYFKHNEE---AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQF 174 (516)
T ss_dssp HTTCEEEEECTTSCCCHHH--HHHTGGGGTTBCCSTTTTTC-------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHH
T ss_pred HcCCCEEEEeCCCcchHHH--HHHHHHHHhccccHHHHHhhhhh---hhhccCCCeEEEEECCCccchhhHHHHHHHHHH
Confidence 9999999999998776431 11111000 00001111111000 001134578999999999999888888888888
Q ss_pred hhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 003873 499 IKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578 (790)
Q Consensus 499 i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~ 578 (790)
++..+.|||||||+.....++++.+||..+.|.+|+.+++..+|..+|..+++.++++++..|++.+.||+|+++++|++
T Consensus 175 l~~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 175 CRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp HHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred HHhcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 88899999999998877788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhccCC------CcccHHHHHhhcCCCcchHHHHHHHHhhhhcCCC
Q 003873 579 MSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG------GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSS 652 (790)
Q Consensus 579 ~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~~~~------~~~~~~e~id~~~~d~~~~~l~i~ENYl~~~~~~ 652 (790)
++.....|+.+++++.+..+.++..+++|+++++||+... ...+++++++++|.|++++++||||||++++|..
T Consensus 255 ~~~~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eNy~~~~p~~ 334 (516)
T 1sxj_A 255 ISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSV 334 (516)
T ss_dssp HHHHSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBGGGTSTTGGGTSCHHHHHHHHTTSTTTHHHHHHHHSSSSEESC
T ss_pred HHhcCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcCCccccccccCCCHHHhhhhhccCHHHHHHHHHHHhhhccccc
Confidence 9998889999999998888889999999999999997321 1357889999999999999999999999998865
Q ss_pred CCCchHHhHHHHHHHHHhcChhhHhhhHhhc-ccccchhcccchhhcccchhhhccCcchhcccccccccccchhhhhch
Q 003873 653 AGRDEVKRLSLIARAAESISDGDIFNVQIRR-NQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNST 731 (790)
Q Consensus 653 ~~~~~~~~l~~~~~aad~lS~aD~v~~~i~~-~q~wsL~~~~~~~ssv~p~~~~~g~~~~~~~g~~~~~~Fp~wlgk~s~ 731 (790)
...+ ...|+.++.|+|+||++|++++.|++ .|+|+|+|+++++++|+|+.+++|.. .+++.||+|||+||+
T Consensus 335 ~~~~-~~~l~~~~~a~d~ls~~D~~~~~i~~~~q~~~l~~~~~~~~~v~p~~~~~g~~-------~~~~~fp~~~~~~s~ 406 (516)
T 1sxj_A 335 LKPG-QSHLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAGHM-------AGRINFTAWLGQNSK 406 (516)
T ss_dssp CCTT-CCHHHHHHHHHHHHHHHHHHHHHHTTCSSCGGGHHHHHHHHTHHHHHTTCEEC-------SSCCCCCSHHHHHHH
T ss_pred cCCc-hhHHHHHHHHHHHHhHHHHHHHHHccCCCCcccchhhHhhhhhccHHHhCCCC-------CCCCcCCHHHhhhch
Confidence 4321 13689999999999999999999999 89999999999999999998888764 245789999999999
Q ss_pred hhHHHHHHHHHHHhhccccccccCchhhhhccHHHHHHHhchhhhcCCcchHHHhhhc
Q 003873 732 MGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDELLRKLLS 789 (790)
Q Consensus 732 ~~K~~r~l~el~~~~~~~~~~~~~~~~~~~~Ylp~L~~~l~~pL~~~~~~~~v~~vi~ 789 (790)
++|++|++++|+.||+.. +++++.+++++|||+|+.+|++||... +.++|++||+
T Consensus 407 ~~k~~r~~~~l~~~~~~~--~~~~~~~~~~~~lp~l~~~~~~~l~~~-~~~~~~~~i~ 461 (516)
T 1sxj_A 407 SAKYYRLLQEIHYHTRLG--TSTXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXX 461 (516)
T ss_dssp HHHHHHHHHHHHTTTTTC--CCHHHHHTTTHHHHHHHHSCCCCHHHH-HHTTTCCSHH
T ss_pred hhHHHHHHHHHHHHhhhh--hcccccccccccccccccccccccccc-cccccccccc
Confidence 999999999999999764 578899999999999999999999864 3567888775
No 2
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.95 E-value=4.1e-27 Score=255.13 Aligned_cols=284 Identities=20% Similarity=0.251 Sum_probs=203.6
Q ss_pred CCccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHH
Q 003873 340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQ 419 (790)
Q Consensus 340 ~~~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAk 419 (790)
.....+|++||+|++|++++|++..++.|+.|+... ..++.+||+||||||||++|+++|+
T Consensus 10 ~~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~-------------------~~~~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 10 NEKEHILEQKYRPSTIDECILPAFDKETFKSITSKG-------------------KIPHIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp CTTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTT-------------------CCCSEEEECSSTTSSHHHHHHHHHH
T ss_pred CcccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcC-------------------CCCeEEEeeCcCCCCHHHHHHHHHH
Confidence 345779999999999999999999999999999851 2457889999999999999999999
Q ss_pred HhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCC-ccchhHHHHHHHH
Q 003873 420 MLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMS-AGDRGGIADLIAS 498 (790)
Q Consensus 420 elg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~-~~~~~~l~~Ll~~ 498 (790)
+++.+++++|+++.. ...+++.+....... .....+.||||||+|.|. ...++.+..+++.
T Consensus 71 ~l~~~~~~i~~~~~~---------------~~~i~~~~~~~~~~~---~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~ 132 (324)
T 3u61_B 71 DVNADMMFVNGSDCK---------------IDFVRGPLTNFASAA---SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEA 132 (324)
T ss_dssp HTTEEEEEEETTTCC---------------HHHHHTHHHHHHHBC---CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHH
T ss_pred HhCCCEEEEcccccC---------------HHHHHHHHHHHHhhc---ccCCCCeEEEEECCcccCcHHHHHHHHHHHHh
Confidence 999999999998743 123333333322111 112367899999999998 7777777777775
Q ss_pred hhcCCCcEEEEecccchhhhhhccccccccccCCCCHHH-------HHHHHHHHHHHcCCCCCH-HHHHHHHHHccCCHH
Q 003873 499 IKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQE-------IAKRLMQIANAEGLEVNE-IALEELADRVNGDIR 570 (790)
Q Consensus 499 i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~e-------i~~iL~~I~~~Egi~i~~-~~l~~Ia~~s~GDiR 570 (790)
. ...+.||++||.. ....++|++||..+.|.+|+.++ +..++..+|..+++.+++ ++++.|++.++||+|
T Consensus 133 ~-~~~~~iI~~~n~~-~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R 210 (324)
T 3u61_B 133 Y-SSNCSIIITANNI-DGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR 210 (324)
T ss_dssp H-GGGCEEEEEESSG-GGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT
T ss_pred C-CCCcEEEEEeCCc-cccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH
Confidence 3 3467788888863 45668899999999999999877 556677788899999988 999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhccCCCcccHHHHHhhcCCCcchHHHHHHHHhhhhcC
Q 003873 571 MAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRP 650 (790)
Q Consensus 571 ~aIn~Lq~~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~~~~~~~~~~e~id~~~~d~~~~~l~i~ENYl~~~~ 650 (790)
.++|.|+.++ ....|+.+.+...+.. .-.+|..+..+...+ .......+...+.++..+...+.+++....+
T Consensus 211 ~a~~~L~~~~-~~~~i~~~~v~~~~~~-----~~~i~~~~~~~~~~~--~~~a~~~~~~l~~~~~~i~~~l~~~~~~~~~ 282 (324)
T 3u61_B 211 KTIGELDSYS-SKGVLDAGILSLVTND-----RGAIDDVLESLKNKD--VKQLRALAPKYAADYSWFVGKLAEEIYSRVT 282 (324)
T ss_dssp HHHHHHHHHG-GGTCBCC-----------------CHHHHHHHHTTC--HHHHHHHHHHHSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHh-ccCCCCHHHHHHHhCC-----HHHHHHHHHHHHcCC--HHHHHHHHHHhccCHHHHHHHHHHHHHHhCC
Confidence 9999999988 5566888888765432 113455555554211 1111122222223777777778887765432
Q ss_pred CCCCCchHHhHHHHHHHHHhcChhhHhhhH
Q 003873 651 SSAGRDEVKRLSLIARAAESISDGDIFNVQ 680 (790)
Q Consensus 651 ~~~~~~~~~~l~~~~~aad~lS~aD~v~~~ 680 (790)
.+.+..+.+.|+..|.....
T Consensus 283 ----------~~~l~~i~~~l~~~d~~l~~ 302 (324)
T 3u61_B 283 ----------PQSIIRMYEIVGENNQYHGI 302 (324)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTT
T ss_pred ----------HHHHHHHHHHHHHHHHHHHh
Confidence 34578888888888875543
No 3
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=99.92 E-value=1.6e-25 Score=204.39 Aligned_cols=104 Identities=50% Similarity=0.841 Sum_probs=99.4
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcch
Q 003873 177 RGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAK 256 (790)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K 256 (790)
...|++|..+.+|++++++++|.+.++||.|++|||||+|+.++|+|++++|+.+||+|+++||++|||||+|+++|++|
T Consensus 5 ~~~~~~~~~~~~p~~~g~~~~p~~~~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK 84 (109)
T 2k6g_A 5 YQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSK 84 (109)
T ss_dssp CHHHHHHHTCCCCSSTTTSCCCCCCTTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHH
T ss_pred HHHHHHhhcccCCCCCCcccCCCCCCCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHhCCceeCHHHHHHHHhhc
Q 003873 257 STKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 257 ~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
+++|+++||+||+|++|++||.+.
T Consensus 85 ~~kA~~lgI~Ii~E~~f~~ll~~~ 108 (109)
T 2k6g_A 85 SDKAAALGTKIIDEDGLLNLIRNL 108 (109)
T ss_dssp HHHHHHHTCEEECHHHHHHHHHHT
T ss_pred HHHHHHcCCeEEeHHHHHHHHHhC
Confidence 999999999999999999999753
No 4
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.92 E-value=8.6e-25 Score=234.61 Aligned_cols=232 Identities=28% Similarity=0.431 Sum_probs=174.6
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML- 421 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel- 421 (790)
..+|++||+|.++++++|++..++.|..|+.. ....++||+||||+|||++|+.+++.+
T Consensus 4 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~--------------------~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVER--------------------KNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp --CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT--------------------TCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred cccHHHhcCCCCHHHHhCCHHHHHHHHHHHhC--------------------CCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 56999999999999999999999998888765 122349999999999999999999987
Q ss_pred ----CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHH
Q 003873 422 ----GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIA 497 (790)
Q Consensus 422 ----g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~ 497 (790)
+..++++|+++.++... ....+.++.... . .....+.||||||+|.|....++.+..+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~----~--~~~~~~~vliiDe~~~l~~~~~~~L~~~le 127 (319)
T 2chq_A 64 GENWRDNFIEMNASDERGIDV----------VRHKIKEFARTA----P--IGGAPFKIIFLDEADALTADAQAALRRTME 127 (319)
T ss_dssp TTCHHHHCEEEETTSTTCTTT----------SSHHHHHHHHSC----C--SSSCCCEEEEEETGGGSCHHHHHTTGGGTS
T ss_pred CCcccCCeEEEeCccccChHH----------HHHHHHHHHhcC----C--CCCCCceEEEEeCCCcCCHHHHHHHHHHHH
Confidence 34578999887544210 011223322111 0 012457899999999998765555444443
Q ss_pred HhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 003873 498 SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577 (790)
Q Consensus 498 ~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq 577 (790)
. ....+.+|++||. .....+++.+||..+.|.+++.+++..+|..++..+++.+++++++.|+..++||+|.+++.|+
T Consensus 128 ~-~~~~~~~i~~~~~-~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 128 M-YSKSCRFILSCNY-VSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp S-SSSSEEEEEEESC-GGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred h-cCCCCeEEEEeCC-hhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 1244567777775 3456688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 578 YMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 578 ~~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
.++.....++.+++.+.+.... ...+|+.+..++.
T Consensus 206 ~~~~~~~~i~~~~v~~~~~~~~---~~~~~~l~~~~~~ 240 (319)
T 2chq_A 206 GAAAIGEVVDADTIYQITATAR---PEEMTELIQTALK 240 (319)
T ss_dssp HHHHSSSCBCHHHHHHHTTCCC---HHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHCCCC---HHHHHHHHHHHHh
Confidence 9888777899998887643221 1245666666653
No 5
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.92 E-value=5e-24 Score=229.44 Aligned_cols=233 Identities=29% Similarity=0.438 Sum_probs=176.7
Q ss_pred ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.+.+|++||+|.+|++++|++..++.|..|+.. ....++||+||||+|||++|+.+++.+
T Consensus 11 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~--------------------~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 11 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT--------------------GSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHH--------------------TCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cCCchhhccCCCCHHHhhCCHHHHHHHHHHHHc--------------------CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467999999999999999999999999999987 123469999999999999999999987
Q ss_pred C-----CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHH
Q 003873 422 G-----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLI 496 (790)
Q Consensus 422 g-----~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll 496 (790)
. ..++++++++..+.. .+ ...+.++..... . ....+.||||||+|.+....++.+..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~----~--~~~~~~vliiDe~~~l~~~~~~~L~~~l 134 (327)
T 1iqp_A 71 FGENWRHNFLELNASDERGIN--VI--------REKVKEFARTKP----I--GGASFKIIFLDEADALTQDAQQALRRTM 134 (327)
T ss_dssp HGGGHHHHEEEEETTCHHHHH--TT--------HHHHHHHHHSCC----G--GGCSCEEEEEETGGGSCHHHHHHHHHHH
T ss_pred cCCcccCceEEeeccccCchH--HH--------HHHHHHHHhhCC----c--CCCCCeEEEEeCCCcCCHHHHHHHHHHH
Confidence 3 347888887642210 00 112222221110 0 0145689999999999887777777777
Q ss_pred HHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 003873 497 ASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576 (790)
Q Consensus 497 ~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~L 576 (790)
+.. ...+.+|+++|. ....++++.+||..+.|.+++.+++..+|..++..+++.+++++++.|+..++||+|.+++.|
T Consensus 135 e~~-~~~~~~i~~~~~-~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 135 EMF-SSNVRFILSCNY-SSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp HHT-TTTEEEEEEESC-GGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred Hhc-CCCCeEEEEeCC-ccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 642 345567777775 345668899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 577 QYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 577 q~~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
+.++.....++.+++...+..... ..+|+.+..++.
T Consensus 213 ~~~~~~~~~i~~~~v~~~~~~~~~---~~i~~l~~~~~~ 248 (327)
T 1iqp_A 213 QAAAALDKKITDENVFMVASRARP---EDIREMMLLALK 248 (327)
T ss_dssp HHHHTTCSEECHHHHHHHTTCCCH---HHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHCCCCH---HHHHHHHHHHHc
Confidence 988877667888888765432211 234555555543
No 6
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.91 E-value=4.9e-24 Score=232.46 Aligned_cols=224 Identities=25% Similarity=0.376 Sum_probs=168.0
Q ss_pred CccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHH
Q 003873 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 341 ~~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.++.+|++||+|.++++++|++..++.|..|+..+ ...++||+||||+|||++|+++++.
T Consensus 22 ~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~--------------------~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 22 LAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA--------------------NLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp ----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT--------------------TCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC--------------------CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999999999888761 1234999999999999999999998
Q ss_pred hC------CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhc----cccCCCCCceEEEEecCCCCCccchh
Q 003873 421 LG------FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA----NMDRSKHPKTVLIMDEVDGMSAGDRG 490 (790)
Q Consensus 421 lg------~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~----~~~~~~~~~~VLIIDEiD~L~~~~~~ 490 (790)
++ ..++++++++.++.. .+. ..+..+........ ........+.||||||+|.+....++
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~ 151 (353)
T 1sxj_D 82 LYGPDLMKSRILELNASDERGIS--IVR--------EKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQS 151 (353)
T ss_dssp HHHHHHHTTSEEEECSSSCCCHH--HHT--------THHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHH
T ss_pred hCCCcccccceEEEccccccchH--HHH--------HHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHH
Confidence 64 468899988754321 111 11111111100000 00001234579999999999987777
Q ss_pred HHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHH
Q 003873 491 GIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIR 570 (790)
Q Consensus 491 ~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR 570 (790)
.+..+++.. .....+|++||. ....++++++||..+.|.+++.+++..+|..++..+++.+++++++.|++.++||+|
T Consensus 152 ~Ll~~le~~-~~~~~~il~~~~-~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r 229 (353)
T 1sxj_D 152 ALRRTMETY-SGVTRFCLICNY-VTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLR 229 (353)
T ss_dssp HHHHHHHHT-TTTEEEEEEESC-GGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHhc-CCCceEEEEeCc-hhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHH
Confidence 777777653 234567777775 345678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CC----CCCHHHHHHHHH
Q 003873 571 MAINQLQYMSLS--LS----VIKYDDIRQRLL 596 (790)
Q Consensus 571 ~aIn~Lq~~~~~--~~----~it~~~v~~~~~ 596 (790)
.+++.|+.++.. .. .|+.+++.+.+.
T Consensus 230 ~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 230 RGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 999999877643 11 699999988665
No 7
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=198.39 Aligned_cols=95 Identities=53% Similarity=0.859 Sum_probs=91.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCC
Q 003873 186 RKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGT 265 (790)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i 265 (790)
..+||++|++++|.+.++||.|++|||||+|+.++|+|++++|+++||+|+++||++|||||+|+++|++|+++|++|||
T Consensus 4 ~~~p~~~g~k~~P~~~~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~lgI 83 (112)
T 2ebu_A 4 GSSGKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGT 83 (112)
T ss_dssp SCSSCCTTSSCCCCCCSSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHHTC
T ss_pred CCCCCCCCCccCCCCCCCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeCHHHHHHHHhhc
Q 003873 266 PFLTEDGLFDMIRAS 280 (790)
Q Consensus 266 ~ii~e~~f~~~l~~~ 280 (790)
+||+|++|++||...
T Consensus 84 ~IisE~~f~~ll~~~ 98 (112)
T 2ebu_A 84 KIIDEDGLLNLIRTM 98 (112)
T ss_dssp EEEEHHHHHHHHHHS
T ss_pred eEEeHHHHHHHHhhC
Confidence 999999999999864
No 8
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.91 E-value=3.6e-24 Score=234.03 Aligned_cols=215 Identities=24% Similarity=0.414 Sum_probs=169.9
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
..+|++||+|.+|++++||+.+++.|..++.. +...++||+||||+||||+|+++|+.+.
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~--------------------g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDE--------------------GKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT--------------------TCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhc--------------------CCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 67999999999999999999999999999886 1123499999999999999999999974
Q ss_pred -----CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHH
Q 003873 423 -----FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIA 497 (790)
Q Consensus 423 -----~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~ 497 (790)
..++++|+++.++. ..+++.+....... ......+.|+||||+|.|+...++.+..+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~--------------~~ir~~i~~~~~~~--~~~~~~~~viiiDe~~~l~~~~~~~L~~~le 135 (340)
T 1sxj_C 72 GKNYSNMVLELNASDDRGI--------------DVVRNQIKDFASTR--QIFSKGFKLIILDEADAMTNAAQNALRRVIE 135 (340)
T ss_dssp TTSHHHHEEEECTTSCCSH--------------HHHHTHHHHHHHBC--CSSSCSCEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred CCCccceEEEEcCcccccH--------------HHHHHHHHHHHhhc--ccCCCCceEEEEeCCCCCCHHHHHHHHHHHh
Confidence 35788998875442 12333332211100 0012346899999999999887888887777
Q ss_pred HhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 003873 498 SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577 (790)
Q Consensus 498 ~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq 577 (790)
.. .....+|++||. ....++++++||..+.|.+++.+++..+|..++..+++.++++++..|++.++||+|.+++.|+
T Consensus 136 ~~-~~~~~~il~~n~-~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~ 213 (340)
T 1sxj_C 136 RY-TKNTRFCVLANY-AHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQ 213 (340)
T ss_dssp HT-TTTEEEEEEESC-GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred cC-CCCeEEEEEecC-ccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 53 344567777775 4566789999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhcCC-----CCCHHHHHHHH
Q 003873 578 YMSLSLS-----VIKYDDIRQRL 595 (790)
Q Consensus 578 ~~~~~~~-----~it~~~v~~~~ 595 (790)
.++.... .++.+.+.+.+
T Consensus 214 ~~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 214 SCKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TTTTTTCSSSCCCBCHHHHHHHT
T ss_pred HHHHhcCCcccccccHHHHHHHh
Confidence 7765533 58888877654
No 9
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.90 E-value=1.3e-22 Score=204.32 Aligned_cols=216 Identities=30% Similarity=0.465 Sum_probs=170.3
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML- 421 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel- 421 (790)
..+|+++|+|.++++++|++..++.|..|+... ...++||+||+|||||++|+.+++++
T Consensus 4 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~--------------------~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERK--------------------NIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTT--------------------CCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCC--------------------CCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 468999999999999999999999999999861 23459999999999999999999986
Q ss_pred ----CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHH
Q 003873 422 ----GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIA 497 (790)
Q Consensus 422 ----g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~ 497 (790)
...++++++++..+. ..+...+....... ......+.||||||+|.+.......+..+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~ 127 (226)
T 2chg_A 64 GENWRDNFIEMNASDERGI--------------DVVRHKIKEFARTA--PIGGAPFKIIFLDEADALTADAQAALRRTME 127 (226)
T ss_dssp GGGGGGGEEEEETTCTTCH--------------HHHHHHHHHHHTSC--CSTTCSCEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred ccccccceEEeccccccCh--------------HHHHHHHHHHhccc--CCCccCceEEEEeChhhcCHHHHHHHHHHHH
Confidence 356788888765332 12222222221110 0112457899999999998876666766666
Q ss_pred HhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 003873 498 SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577 (790)
Q Consensus 498 ~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq 577 (790)
.. ...+.+|+++|.. ....+.+.+||..+.|.+++.+++..+|..++..+++.++++++..|++.++||+|.+++.|+
T Consensus 128 ~~-~~~~~~i~~~~~~-~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 128 MY-SKSCRFILSCNYV-SRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp HT-TTTEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hc-CCCCeEEEEeCCh-hhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 42 3455677777753 445578889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHH
Q 003873 578 YMSLSLSVIKYDDIRQRLL 596 (790)
Q Consensus 578 ~~~~~~~~it~~~v~~~~~ 596 (790)
.++.....|+.+++++++.
T Consensus 206 ~~~~~~~~I~~~~v~~~~~ 224 (226)
T 2chg_A 206 GAAAIGEVVDADTIYQITA 224 (226)
T ss_dssp HHHHTCSCBCHHHHHHHHH
T ss_pred HHHhcCceecHHHHHHHhc
Confidence 9888778899999887654
No 10
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.90 E-value=1e-23 Score=230.62 Aligned_cols=206 Identities=22% Similarity=0.385 Sum_probs=151.4
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHH-HhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWL-AHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL-~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
++|++||+|++|++++||+.+++.|+.|+ .. +..++ ++|+||+|+||||+++++++++.
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~-------------------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQP-------------------RDLPH-LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT-------------------TCCCC-EEEECSTTSSHHHHHHTHHHHHS
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhC-------------------CCCCe-EEEECCCCCCHHHHHHHHHHHHc
Confidence 58999999999999999999998888777 33 11234 99999999999999999999752
Q ss_pred C-----------------------------cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhcccc------
Q 003873 423 F-----------------------------QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMD------ 467 (790)
Q Consensus 423 ~-----------------------------~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~------ 467 (790)
. .++++++++... .....+++.+..........
T Consensus 62 ~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~i~~~~~~~~~~~~~~ls 129 (354)
T 1sxj_E 62 GPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGN------------NDRIVIQELLKEVAQMEQVDFQDSKD 129 (354)
T ss_dssp CTTCCC------------------CCEECSSEEEECCC----------------CCHHHHHHHHHHHTTTTC--------
T ss_pred CCCCCeEEecceeecccccccceeeeecccceEEecHhhcCC------------cchHHHHHHHHHHHHhcccccccccc
Confidence 1 122333322110 01112444444432111110
Q ss_pred CCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHH
Q 003873 468 RSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN 547 (790)
Q Consensus 468 ~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~ 547 (790)
.....+.||||||++.|....++.+..+++.. ...+.||++|++. ...++++++||..++|.+++.+++..+|..++.
T Consensus 130 ~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~-~~~~~~Il~t~~~-~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 130 GLAHRYKCVIINEANSLTKDAQAALRRTMEKY-SKNIRLIMVCDSM-SPIIAPIKSQCLLIRCPAPSDSEISTILSDVVT 207 (354)
T ss_dssp ----CCEEEEEECTTSSCHHHHHHHHHHHHHS-TTTEEEEEEESCS-CSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh-cCCCEEEEEeCCH-HHHHHHHHhhceEEecCCcCHHHHHHHHHHHHH
Confidence 00235789999999998877777777777653 2356777888763 456789999999999999999999999999999
Q ss_pred HcCCCCC-HHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 003873 548 AEGLEVN-EIALEELADRVNGDIRMAINQLQYMSLSL 583 (790)
Q Consensus 548 ~Egi~i~-~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~ 583 (790)
.+++.++ +++++.|++.++||+|.+++.|+.++...
T Consensus 208 ~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 208 NERIQLETKDILKRIAQASNGNLRVSLLMLESMALNN 244 (354)
T ss_dssp HHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHTT
T ss_pred HcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999 99999999999999999999999887654
No 11
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.90 E-value=9.7e-23 Score=231.00 Aligned_cols=213 Identities=22% Similarity=0.301 Sum_probs=166.7
Q ss_pred cchhhhhcCCCCCccccCCHHHH---HHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHH
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLV---KQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQ 419 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i---~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAk 419 (790)
..+|.++|+|++|++++|++..+ ..|..++.. ...+++||+|||||||||+|++||+
T Consensus 13 ~~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~--------------------~~~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 13 FQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEA--------------------GHLHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp -CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHH--------------------TCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHc--------------------CCCcEEEEECCCCCcHHHHHHHHHH
Confidence 36899999999999999999999 778777776 2347899999999999999999999
Q ss_pred HhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHh
Q 003873 420 MLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI 499 (790)
Q Consensus 420 elg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i 499 (790)
.++..++++++.... ...+++.+..+..... ...+.||||||||.|....+..|..+++
T Consensus 73 ~~~~~f~~l~a~~~~---------------~~~ir~~~~~a~~~~~----~~~~~iLfIDEI~~l~~~~q~~LL~~le-- 131 (447)
T 3pvs_A 73 YANADVERISAVTSG---------------VKEIREAIERARQNRN----AGRRTILFVDEVHRFNKSQQDAFLPHIE-- 131 (447)
T ss_dssp HTTCEEEEEETTTCC---------------HHHHHHHHHHHHHHHH----TTCCEEEEEETTTCC------CCHHHHH--
T ss_pred HhCCCeEEEEeccCC---------------HHHHHHHHHHHHHhhh----cCCCcEEEEeChhhhCHHHHHHHHHHHh--
Confidence 999999999986531 2345555554432221 2456899999999998877766665555
Q ss_pred hcCCCcEEEEecccch-hhhhhccccccccccCCCCHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHccCCHHH
Q 003873 500 KISKIPIICICNDRYS-QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA-------EGLEVNEIALEELADRVNGDIRM 571 (790)
Q Consensus 500 ~~s~~pII~I~nd~~~-~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~-------Egi~i~~~~l~~Ia~~s~GDiR~ 571 (790)
...+.||++++.+.. ...+.|++||..+.|.+++.+++..+|.+++.. +++.+++++++.|+..++||+|.
T Consensus 132 -~~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ 210 (447)
T 3pvs_A 132 -DGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARR 210 (447)
T ss_dssp -TTSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHH
T ss_pred -cCceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHH
Confidence 456677776654443 445889999999999999999999999999987 56779999999999999999999
Q ss_pred HHHHHHHHHhcC-------CCCCHHHHHHHHHh
Q 003873 572 AINQLQYMSLSL-------SVIKYDDIRQRLLS 597 (790)
Q Consensus 572 aIn~Lq~~~~~~-------~~it~~~v~~~~~~ 597 (790)
++|.|+.++... ..|+.+++.+.+..
T Consensus 211 lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 211 ALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 999999887643 25999999887754
No 12
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.90 E-value=5.4e-23 Score=220.99 Aligned_cols=217 Identities=28% Similarity=0.471 Sum_probs=171.2
Q ss_pred ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
+..+|++||+|.++++++|++..++.|..|+.. ....++||+||+|+|||++|+.+++.+
T Consensus 7 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~--------------------~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 7 LQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKD--------------------GNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CCCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHS--------------------CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHc--------------------CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 457999999999999999999999999999876 112349999999999999999999987
Q ss_pred -----CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHH
Q 003873 422 -----GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLI 496 (790)
Q Consensus 422 -----g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll 496 (790)
+..++++++++.++. ..+++.+........ ......+.||||||+|.|.....+.+..++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~--------------~~i~~~~~~~~~~~~-~~~~~~~~viiiDe~~~l~~~~~~~L~~~l 131 (323)
T 1sxj_B 67 LGRSYADGVLELNASDDRGI--------------DVVRNQIKHFAQKKL-HLPPGKHKIVILDEADSMTAGAQQALRRTM 131 (323)
T ss_dssp HGGGHHHHEEEECTTSCCSH--------------HHHHTHHHHHHHBCC-CCCTTCCEEEEEESGGGSCHHHHHTTHHHH
T ss_pred cCCcccCCEEEecCccccCh--------------HHHHHHHHHHHhccc-cCCCCCceEEEEECcccCCHHHHHHHHHHH
Confidence 356889998765432 234444433221000 000234789999999999887666676666
Q ss_pred HHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 003873 497 ASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576 (790)
Q Consensus 497 ~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~L 576 (790)
+.. ...+.+|++||. ....++++++||..+.|.+++.+++..+|..++..+++.+++++++.|++.++||+|.+++.|
T Consensus 132 e~~-~~~~~~il~~~~-~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 132 ELY-SNSTRFAFACNQ-SNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp HHT-TTTEEEEEEESC-GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcc-CCCceEEEEeCC-hhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 642 345667777765 445668899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHH
Q 003873 577 QYMSLSLSVIKYDDIRQRL 595 (790)
Q Consensus 577 q~~~~~~~~it~~~v~~~~ 595 (790)
+.++.....++.+++.+.+
T Consensus 210 ~~~~~~~~~i~~~~v~~~~ 228 (323)
T 1sxj_B 210 QSTVAGHGLVNADNVFKIV 228 (323)
T ss_dssp HHHHHHHSSBCHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHH
Confidence 9887665678888887655
No 13
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.89 E-value=1.5e-22 Score=222.34 Aligned_cols=215 Identities=20% Similarity=0.307 Sum_probs=164.2
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
..+|++||+|.++++++|++..++.|..++... ..++++||+||+|+|||++|+.+++.++
T Consensus 3 ~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~-------------------~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLG-------------------RIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHT-------------------CCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred cHHHHHhhCCCchhhccCcHHHHHHHHHHHHhC-------------------CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 458999999999999999999999999999761 2356899999999999999999999987
Q ss_pred Cc------------------------EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEE
Q 003873 423 FQ------------------------AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478 (790)
Q Consensus 423 ~~------------------------iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLII 478 (790)
+. ++++++... .....+++++....... ....+.||||
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~----~~~~~~vlii 125 (373)
T 1jr3_A 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASR--------------TKVEDTRDLLDNVQYAP----ARGRFKVYLI 125 (373)
T ss_dssp CTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCS--------------CCSSCHHHHHHHTTSCC----SSSSSEEEEE
T ss_pred CCCCCCCCCCcccHHHHHHhccCCCceEEeccccc--------------CCHHHHHHHHHHHhhcc----ccCCeEEEEE
Confidence 53 233332211 11234566665543211 1345689999
Q ss_pred ecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 003873 479 DEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIAL 558 (790)
Q Consensus 479 DEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l 558 (790)
||+|.|.....+.+..+++.. ...+.+|+++++ .....+++++||..+.|.+++.+++..+|..++..+++.++++++
T Consensus 126 De~~~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~-~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~ 203 (373)
T 1jr3_A 126 DEVHMLSRHSFNALLKTLEEP-PEHVKFLLATTD-PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 (373)
T ss_dssp ECGGGSCHHHHHHHHHHHHSC-CSSEEEEEEESC-GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHH
T ss_pred ECcchhcHHHHHHHHHHHhcC-CCceEEEEEeCC-hHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 999999876656555555421 223445556654 345568899999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHH
Q 003873 559 EELADRVNGDIRMAINQLQYMSL-SLSVIKYDDIRQRLL 596 (790)
Q Consensus 559 ~~Ia~~s~GDiR~aIn~Lq~~~~-~~~~it~~~v~~~~~ 596 (790)
..|++.++||+|.+++.|+.+.. ....|+.+++.+.+.
T Consensus 204 ~~l~~~~~G~~r~~~~~l~~~~~~~~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 204 QLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 (373)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHHTTTCBCHHHHHHHTT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHhC
Confidence 99999999999999999976543 456789888877553
No 14
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.88 E-value=2.9e-21 Score=210.15 Aligned_cols=217 Identities=18% Similarity=0.241 Sum_probs=162.8
Q ss_pred CccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHH
Q 003873 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 341 ~~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.....|.++|+|.+|++|+|++..++.|..|+..+... .....++||+||||||||++|+++|+.
T Consensus 14 ~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~---------------~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 14 SFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR---------------NECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp ---------CCCCSGGGCCSCHHHHHHHHHHHHHHHHT---------------TSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred chhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhc---------------CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 45679999999999999999999999999999985321 124568999999999999999999999
Q ss_pred hCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh
Q 003873 421 LGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK 500 (790)
Q Consensus 421 lg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~ 500 (790)
++..++.++++.... ...+..++.. .....+|||||||.|....+..+..+++...
T Consensus 79 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~----------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~ 134 (338)
T 3pfi_A 79 MSANIKTTAAPMIEK--------------SGDLAAILTN----------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYR 134 (338)
T ss_dssp TTCCEEEEEGGGCCS--------------HHHHHHHHHT----------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSC
T ss_pred hCCCeEEecchhccc--------------hhHHHHHHHh----------ccCCCEEEEechhhcCHHHHHHHHHHHHhcc
Confidence 999999999875422 2234444443 2345799999999998777777766665321
Q ss_pred c-----------------CCCcEEEEecccchhhhhhccccc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003873 501 I-----------------SKIPIICICNDRYSQKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELA 562 (790)
Q Consensus 501 ~-----------------s~~pII~I~nd~~~~~l~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia 562 (790)
. ..+.+|+++|. .....++|++|| ..+.|.+|+.+++..+|...+...++.+++++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~i~atn~-~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~ 213 (338)
T 3pfi_A 135 LDIIIGSGPAAQTIKIDLPKFTLIGATTR-AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIA 213 (338)
T ss_dssp C---------CCCCCCCCCCCEEEEEESC-GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHH
T ss_pred chhhcccCccccceecCCCCeEEEEeCCC-ccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 0 01335555554 333447889998 7899999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHH---hc--CCCCCHHHHHHHHHh
Q 003873 563 DRVNGDIRMAINQLQYMS---LS--LSVIKYDDIRQRLLS 597 (790)
Q Consensus 563 ~~s~GDiR~aIn~Lq~~~---~~--~~~it~~~v~~~~~~ 597 (790)
..+.|++|.+++.|+.+. .. ...|+.+++...+..
T Consensus 214 ~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 214 KRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp HTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 999999999999998743 21 455888888776654
No 15
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.88 E-value=2.1e-21 Score=197.70 Aligned_cols=214 Identities=21% Similarity=0.315 Sum_probs=158.8
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
..+|.++|+|..+++++|++..++.|..|+... ..++.++|+||+|+|||++|+.+++.++
T Consensus 10 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 10 YQVLARKWRPQTFADVVGQEHVLTALANGLSLG-------------------RIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp -CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHT-------------------CCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhccCCccHHHHhCcHHHHHHHHHHHHcC-------------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 568999999999999999999999999999861 1346899999999999999999999885
Q ss_pred CcE------------------------EEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEE
Q 003873 423 FQA------------------------IEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIM 478 (790)
Q Consensus 423 ~~i------------------------iEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLII 478 (790)
... +.++... ......+.+++..... ......+.||||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~----~~~~~~~~vlvi 132 (250)
T 1njg_A 71 CETGITATPCGVCDNCREIEQGRFVDLIEIDAAS--------------RTKVEDTRDLLDNVQY----APARGRFKVYLI 132 (250)
T ss_dssp CTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC--------------GGGHHHHHHHHHSCCC----SCSSSSSEEEEE
T ss_pred CCCCCCCCCCcccHHHHHHhccCCcceEEecCcc--------------cccHHHHHHHHHHhhh----chhcCCceEEEE
Confidence 432 1111111 0112334444443211 111345689999
Q ss_pred ecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 003873 479 DEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIAL 558 (790)
Q Consensus 479 DEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l 558 (790)
||+|.+.......+..+++.. ...+.+|++++. .....+.+.+||..+.|.+++.+++..++..++..+++.++++++
T Consensus 133 De~~~l~~~~~~~l~~~l~~~-~~~~~~i~~t~~-~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~ 210 (250)
T 1njg_A 133 DEVHMLSRHSFNALLKTLEEP-PEHVKFLLATTD-PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 210 (250)
T ss_dssp ETGGGSCHHHHHHHHHHHHSC-CTTEEEEEEESC-GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred ECcccccHHHHHHHHHHHhcC-CCceEEEEEeCC-hHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 999999765555554444421 234456666664 334557788999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhc-CCCCCHHHHHHHH
Q 003873 559 EELADRVNGDIRMAINQLQYMSLS-LSVIKYDDIRQRL 595 (790)
Q Consensus 559 ~~Ia~~s~GDiR~aIn~Lq~~~~~-~~~it~~~v~~~~ 595 (790)
+.|++.++|++|.++++++.+... ...|+.+++++++
T Consensus 211 ~~l~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 211 QLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTTTSSBCHHHHHHHS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhccCceecHHHHHHHh
Confidence 999999999999999999877654 4568888887643
No 16
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.83 E-value=1.9e-19 Score=197.79 Aligned_cols=236 Identities=18% Similarity=0.201 Sum_probs=163.2
Q ss_pred cchhhhhcCCCC-CccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 343 SLTWTEKYRPKT-PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 343 ~~lW~eKY~P~s-l~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
...+.++|+|.. |++|+|++..++.+..++...... ....+++||+||||||||++|+++|+.+
T Consensus 30 ~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~---------------~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 30 GLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREG---------------KIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp SCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTT---------------CCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcC---------------CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456779999998 999999999988877666553210 1235799999999999999999999999
Q ss_pred CC--cEEEEeCCCCCCchh---hhhh-----------------------------------cccC---CCchhHHHHHHH
Q 003873 422 GF--QAIEVNASDSRGKAD---AKIS-----------------------------------KGIG---GSNANSIKELVS 458 (790)
Q Consensus 422 g~--~iiEinaSd~rsk~~---~~i~-----------------------------------~~~g---~s~~~~i~e~l~ 458 (790)
+. .++.+++........ ..+. ..+. +.....+++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 174 (368)
T 3uk6_A 95 GPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQIN 174 (368)
T ss_dssp CSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHH
T ss_pred cccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHH
Confidence 85 566676543211100 0000 0000 011233444444
Q ss_pred Hhhhhcc-ccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecc------------cchhhhhhccccc
Q 003873 459 NEALSAN-MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICND------------RYSQKLKSLVNYC 525 (790)
Q Consensus 459 ~a~~~~~-~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd------------~~~~~l~~L~sR~ 525 (790)
.+..... .......+.||||||+|.|.....+ .|+..++....++|+++++ ......++|++||
T Consensus 175 ~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~---~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~ 251 (368)
T 3uk6_A 175 AKVAEWREEGKAEIIPGVLFIDEVHMLDIESFS---FLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRL 251 (368)
T ss_dssp HHHHHHHHHTC---CBCEEEEESGGGSBHHHHH---HHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTE
T ss_pred HHHHHhhhhccccccCceEEEhhccccChHHHH---HHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhc
Confidence 4322111 0111122469999999999765444 4445555566677766553 1333447899999
Q ss_pred cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc-CCHHHHHHHHHHHHh-----cCCCCCHHHHHHHHH
Q 003873 526 SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN-GDIRMAINQLQYMSL-----SLSVIKYDDIRQRLL 596 (790)
Q Consensus 526 ~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~-GDiR~aIn~Lq~~~~-----~~~~it~~~v~~~~~ 596 (790)
..+.|.+|+.+++..+|...+..+++.+++++++.|+..+. ||+|.++++|+.++. ....|+.+++++++.
T Consensus 252 ~~i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~ 328 (368)
T 3uk6_A 252 LIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYS 328 (368)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 999999999987653 245788888877654
No 17
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.82 E-value=2.2e-19 Score=184.02 Aligned_cols=207 Identities=17% Similarity=0.173 Sum_probs=158.1
Q ss_pred cchhhhhcCC-CCCccccC---CHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHH
Q 003873 343 SLTWTEKYRP-KTPNEIVG---NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVC 418 (790)
Q Consensus 343 ~~lW~eKY~P-~sl~dLvG---~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lA 418 (790)
...|..+|+| .+|+++++ ++..++.|..|+.. ...+++||+||||||||++|+.++
T Consensus 14 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 14 QLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASG--------------------DGVQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp CCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHT--------------------CSCSEEEEECSTTSSHHHHHHHHH
T ss_pred hcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhC--------------------CCCCeEEEECCCCCCHHHHHHHHH
Confidence 4578999999 79999997 35677777666654 235799999999999999999999
Q ss_pred HHh---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--hhHHH
Q 003873 419 QML---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--RGGIA 493 (790)
Q Consensus 419 kel---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--~~~l~ 493 (790)
+++ ++.++++++++..... .+.+.. .....||||||++.+.... +..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~----------~~~~~vliiDe~~~~~~~~~~~~~l~ 127 (242)
T 3bos_A 74 ARANELERRSFYIPLGIHASIS----------------TALLEG----------LEQFDLICIDDVDAVAGHPLWEEAIF 127 (242)
T ss_dssp HHHHHTTCCEEEEEGGGGGGSC----------------GGGGTT----------GGGSSEEEEETGGGGTTCHHHHHHHH
T ss_pred HHHHHcCCeEEEEEHHHHHHHH----------------HHHHHh----------ccCCCEEEEeccccccCCHHHHHHHH
Confidence 987 4778888876532110 000100 1234699999999998755 66677
Q ss_pred HHHHHhhcCCCc-EEEEecccch---hhhhhccccc---cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc
Q 003873 494 DLIASIKISKIP-IICICNDRYS---QKLKSLVNYC---SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN 566 (790)
Q Consensus 494 ~Ll~~i~~s~~p-II~I~nd~~~---~~l~~L~sR~---~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~ 566 (790)
.+++.......+ +|++++.... ...+.+.+|+ ..+.|.+|+.+++..+|...+...++.+++++++.|++.+.
T Consensus 128 ~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 207 (242)
T 3bos_A 128 DLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMA 207 (242)
T ss_dssp HHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc
Confidence 776655444555 8888875432 2337788888 88999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Q 003873 567 GDIRMAINQLQYMSLS----LSVIKYDDIRQRL 595 (790)
Q Consensus 567 GDiR~aIn~Lq~~~~~----~~~it~~~v~~~~ 595 (790)
||+|.+++.|+.++.. +..|+.+++++++
T Consensus 208 g~~r~l~~~l~~~~~~a~~~~~~It~~~v~~~l 240 (242)
T 3bos_A 208 RDLRTLFDVLDRLDKASMVHQRKLTIPFVKEML 240 (242)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHh
Confidence 9999999999766532 4568888887654
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.82 E-value=7e-19 Score=189.73 Aligned_cols=212 Identities=20% Similarity=0.284 Sum_probs=159.7
Q ss_pred hhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
+|.+||+|.++++++|++..++.|..++..+... .....++||+||||||||++|+++++++++.
T Consensus 1 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~---------------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~ 65 (324)
T 1hqc_A 1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKAR---------------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65 (324)
T ss_dssp ----CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH---------------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCC
T ss_pred CCccccCcccHHHhhCHHHHHHHHHHHHHHHHcc---------------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5788999999999999999999999999875321 1235789999999999999999999999999
Q ss_pred EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhc---
Q 003873 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKI--- 501 (790)
Q Consensus 425 iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~--- 501 (790)
++.++++..... ..+...+... .....+|||||+|.|....+..+..+++....
T Consensus 66 ~~~~~~~~~~~~--------------~~l~~~l~~~---------~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v 122 (324)
T 1hqc_A 66 LRVTSGPAIEKP--------------GDLAAILANS---------LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIV 122 (324)
T ss_dssp EEEECTTTCCSH--------------HHHHHHHTTT---------CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEEC
T ss_pred EEEEeccccCCh--------------HHHHHHHHHh---------ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHh
Confidence 999988754221 2233333220 13456999999999998777777777764320
Q ss_pred --------------CCCcEEEEecccchhhhhhccccc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc
Q 003873 502 --------------SKIPIICICNDRYSQKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN 566 (790)
Q Consensus 502 --------------s~~pII~I~nd~~~~~l~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~ 566 (790)
..+.+|+++|.. ....++|.+|+ ..+.|.+|+.+++..+|...+...++.+++++++.|+..+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~i~~t~~~-~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 201 (324)
T 1hqc_A 123 IGQGPAARTIRLELPRFTLIGATTRP-GLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSR 201 (324)
T ss_dssp CSSSSSCCCEEEECCCCEEEEEESCC-SSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSC
T ss_pred ccccccccccccCCCCEEEEEeCCCc-ccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcc
Confidence 123455566643 33446788998 58999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Q 003873 567 GDIRMAINQLQYMSLS-----LSVIKYDDIRQRL 595 (790)
Q Consensus 567 GDiR~aIn~Lq~~~~~-----~~~it~~~v~~~~ 595 (790)
|++|.+.++++.+... ...|+.+++...+
T Consensus 202 G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~ 235 (324)
T 1hqc_A 202 GTMRVAKRLFRRVRDFAQVAGEEVITRERALEAL 235 (324)
T ss_dssp SCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9999999999876532 2356766665543
No 19
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=99.81 E-value=1.5e-20 Score=166.45 Aligned_cols=77 Identities=47% Similarity=0.756 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 202 PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 202 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
.++|.|++|||||.|+. +|++++++|+++||+|+++||++|||||+|+++| +|+++|+++||+||+|++|+++|...
T Consensus 5 ~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~g-sK~~kA~~lgI~Ii~E~~f~~~l~~~ 81 (92)
T 1l7b_A 5 GEALKGLTFVITGELSR-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPG-SKLEKARALGVPTLTEEELYRLLEAR 81 (92)
T ss_dssp CCSSTTCEEECSTTTTS-CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSS-TTHHHHHCSSSCCEEHHHHHHHHHHH
T ss_pred CCCcCCcEEEEecCCCC-CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCC-hHHHHHHHcCCcEEeHHHHHHHHHhc
Confidence 45799999999999988 9999999999999999999999999999999998 99999999999999999999999764
No 20
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.81 E-value=1.4e-18 Score=193.43 Aligned_cols=211 Identities=14% Similarity=0.164 Sum_probs=148.6
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
..-|+++|.|.+|++|+|++.+++.|..++....... .... ......+++||+||||||||++|++||++++
T Consensus 102 ~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~--~~~~------~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 102 MNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRP--ELFT------GLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp GGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCT--TTSC------GGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred HhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCH--HHhc------ccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 4579999999999999999999999999987532210 0000 0013468999999999999999999999999
Q ss_pred CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--------hhHHHH
Q 003873 423 FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--------RGGIAD 494 (790)
Q Consensus 423 ~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--------~~~l~~ 494 (790)
..++++++++..+.. .+ .....+..++..+.. ..+.||||||||.|.... ...+..
T Consensus 174 ~~~~~v~~~~l~~~~-------~g-~~~~~~~~~~~~a~~--------~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ 237 (389)
T 3vfd_A 174 ATFFNISAASLTSKY-------VG-EGEKLVRALFAVARE--------LQPSIIFIDQVDSLLCERREGEHDASRRLKTE 237 (389)
T ss_dssp CEEEEECSCCC---------------CHHHHHHHHHHHHH--------SSSEEEEEETGGGGC--------CTHHHHHHH
T ss_pred CcEEEeeHHHhhccc-------cc-hHHHHHHHHHHHHHh--------cCCeEEEEECchhhcccCCCccchHHHHHHHH
Confidence 999999998765432 11 112345555555431 245799999999995422 112223
Q ss_pred HHHHhh------cCCCcEEEEecccchhhhhhcccccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Q 003873 495 LIASIK------ISKIPIICICNDRYSQKLKSLVNYCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567 (790)
Q Consensus 495 Ll~~i~------~s~~pII~I~nd~~~~~l~~L~sR~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G 567 (790)
++..+. ..++.||+++|. ...+.+.+++||. .+.|..|+.+++..+|..++..++..++++.+..|+..+.|
T Consensus 238 ll~~l~~~~~~~~~~v~vI~atn~-~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g 316 (389)
T 3vfd_A 238 FLIEFDGVQSAGDDRVLVMGATNR-PQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDG 316 (389)
T ss_dssp HHHHHHHHC-----CEEEEEEESC-GGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTT
T ss_pred HHHHhhcccccCCCCEEEEEecCC-chhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 333332 223345555654 2334467888985 69999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHH
Q 003873 568 DIRMAINQLQY 578 (790)
Q Consensus 568 DiR~aIn~Lq~ 578 (790)
+.+..|+.|..
T Consensus 317 ~~~~~l~~L~~ 327 (389)
T 3vfd_A 317 YSGSDLTALAK 327 (389)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88887777643
No 21
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.80 E-value=6.2e-18 Score=184.51 Aligned_cols=252 Identities=17% Similarity=0.236 Sum_probs=168.5
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
-+.|+++|+|+++++++|++.+++.|..++..+... +....+++|+||||+||||+++++|.+++
T Consensus 12 ~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~---------------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 12 YDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMR---------------GEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp -----CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHH---------------TCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhc---------------CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 357999999999999999999999999888763211 12347899999999999999999999999
Q ss_pred CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhc-
Q 003873 423 FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKI- 501 (790)
Q Consensus 423 ~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~- 501 (790)
+.+...+...... ...+..++.. .....|+||||++.+....++.+...++....
T Consensus 77 ~~~~~~sg~~~~~--------------~~~l~~~~~~----------~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~ 132 (334)
T 1in4_A 77 TNIHVTSGPVLVK--------------QGDMAAILTS----------LERGDVLFIDEIHRLNKAVEELLYSAIEDFQID 132 (334)
T ss_dssp CCEEEEETTTCCS--------------HHHHHHHHHH----------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCC
T ss_pred CCEEEEechHhcC--------------HHHHHHHHHH----------ccCCCEEEEcchhhcCHHHHHHHHHHHHhcccc
Confidence 8877665543211 1223333322 12346999999999987444545444332110
Q ss_pred ----------------CCCcEEEEecccchhhhhhcccccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003873 502 ----------------SKIPIICICNDRYSQKLKSLVNYCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR 564 (790)
Q Consensus 502 ----------------s~~pII~I~nd~~~~~l~~L~sR~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~ 564 (790)
....+|..++ ........+++||. .+.|.+++.+++..+|.+++...++.++++++..|+..
T Consensus 133 i~~~~~~~~~~i~~~l~~~~li~at~-~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 133 IMIGKGPSAKSIRIDIQPFTLVGATT-RSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKR 211 (334)
T ss_dssp C---------------CCCEEEEEES-CGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHT
T ss_pred eeeccCcccccccccCCCeEEEEecC-CcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHh
Confidence 0122333233 23344477889985 57899999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHhccCCC-CCChH--HHHHHHh-ccCCCcccHHHHHhhcCCCc
Q 003873 565 VNGDIRMAINQLQYMSL-----SLSVIKYDDIRQRLLSSAKDE-DISPF--TAVDKLF-GFNGGKLRMDERIDLSMSDP 634 (790)
Q Consensus 565 s~GDiR~aIn~Lq~~~~-----~~~~it~~~v~~~~~~~~kd~-~ls~F--~ai~ki~-~~~~~~~~~~e~id~~~~d~ 634 (790)
+.||+|.++++|+.+.. +...|+.+.+++++.....|. .++.. ..+..+. ++..+...+.......-.+.
T Consensus 212 ~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (334)
T 1in4_A 212 SRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEA 290 (334)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCH
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCc
Confidence 99999999999975421 245799999988876654333 22222 1233222 13344555555444443343
No 22
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.79 E-value=3.1e-18 Score=194.75 Aligned_cols=119 Identities=19% Similarity=0.186 Sum_probs=94.5
Q ss_pred eEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEE-Eec--------cc----chhhhhhccccccccccCCCCHHHHHH
Q 003873 474 TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIIC-ICN--------DR----YSQKLKSLVNYCSDLRFRKPRKQEIAK 540 (790)
Q Consensus 474 ~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~-I~n--------d~----~~~~l~~L~sR~~~I~F~~pt~~ei~~ 540 (790)
.|+||||+|.|.....+.|+.++ +....++|+ .+| .. ....++++++||..++|.+++.+++..
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~l---Ee~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRAL---ESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQ 373 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHT---TSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHh---hccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHH
Confidence 59999999999876656555444 444444444 442 22 344557899999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHH---Hh--cCCCCCHHHHHHHH
Q 003873 541 RLMQIANAEGLEVNEIALEELADRV-NGDIRMAINQLQYM---SL--SLSVIKYDDIRQRL 595 (790)
Q Consensus 541 iL~~I~~~Egi~i~~~~l~~Ia~~s-~GDiR~aIn~Lq~~---~~--~~~~it~~~v~~~~ 595 (790)
+|..++..+++.++++++..|+..+ .|++|.++++|+.+ +. +...|+.++++.++
T Consensus 374 iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~ 434 (456)
T 2c9o_A 374 IIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEIS 434 (456)
T ss_dssp HHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHH
Confidence 9999999999999999999999999 99999999999765 32 34678888887754
No 23
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.79 E-value=3e-18 Score=185.98 Aligned_cols=199 Identities=15% Similarity=0.148 Sum_probs=139.9
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
..|+++|.+.++++|+|++.+++.|+.++..... +.. .... .....+++||+||||||||++|+++|++++.
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~-~~~-~~~~------~~~~~~~vLl~GppGtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVK-FPH-LFKG------NRKPTSGILLYGPPGTGKSYLAKAVATEANS 77 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHH-CGG-GCCT------TCCCCCEEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHh-CHH-HHhc------CCCCCCeEEEECCCCCcHHHHHHHHHHHHCC
Confidence 3688999999999999999999999998864221 110 0000 1234689999999999999999999999999
Q ss_pred cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--------hhHHHHH
Q 003873 424 QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--------RGGIADL 495 (790)
Q Consensus 424 ~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--------~~~l~~L 495 (790)
.++.+++++..+.. ++ .....+..++..+. ...+.||||||+|.|.... ...+..+
T Consensus 78 ~~~~v~~~~l~~~~-------~g-~~~~~~~~~f~~a~--------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 141 (322)
T 3eie_A 78 TFFSVSSSDLVSKW-------MG-ESEKLVKQLFAMAR--------ENKPSIIFIDQVDALTGTRGEGESEASRRIKTEL 141 (322)
T ss_dssp EEEEEEHHHHHTTT-------GG-GHHHHHHHHHHHHH--------HTSSEEEEEECGGGGSCC------CCTHHHHHHH
T ss_pred CEEEEchHHHhhcc-------cc-hHHHHHHHHHHHHH--------hcCCeEEEechhhhhhccCCCCcchHHHHHHHHH
Confidence 99999987532221 11 12234556665543 2345799999999997632 1123334
Q ss_pred HHHhh---cCCCcEEE--Eecccchhhhhhccccc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Q 003873 496 IASIK---ISKIPIIC--ICNDRYSQKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567 (790)
Q Consensus 496 l~~i~---~s~~pII~--I~nd~~~~~l~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G 567 (790)
+..+. .....+++ ++|. ...+.+.+++|| ..+.|..|+.++...+|...+...+..+++..+..|+..+.|
T Consensus 142 l~~l~~~~~~~~~v~vi~atn~-~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g 218 (322)
T 3eie_A 142 LVQMNGVGNDSQGVLVLGATNI-PWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEG 218 (322)
T ss_dssp HHHHGGGGTSCCCEEEEEEESC-GGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTT
T ss_pred HHHhccccccCCceEEEEecCC-hhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCC
Confidence 43332 23333444 4443 233346777787 458899999999999999999888888899999999999877
No 24
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.77 E-value=6.6e-18 Score=185.46 Aligned_cols=231 Identities=17% Similarity=0.172 Sum_probs=165.2
Q ss_pred ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....|..+|.| ++++|++..++.|..||..+.. ....++++|+||||||||++|+.+++.+
T Consensus 8 ~~~~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~----------------~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 8 KRWVLLPDYVP---DVLPHREAELRRLAEVLAPALR----------------GEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CHHHHSTTCCC---SCCTTCHHHHHHHHHTTGGGTS----------------SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CHHhcCCccCC---CCCCCHHHHHHHHHHHHHHHHc----------------CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34578888988 8899999999999999976311 1245789999999999999999999998
Q ss_pred ---------CCcEEEEeCCCCCCchh--hhhhcccC------CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCC
Q 003873 422 ---------GFQAIEVNASDSRGKAD--AKISKGIG------GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGM 484 (790)
Q Consensus 422 ---------g~~iiEinaSd~rsk~~--~~i~~~~g------~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L 484 (790)
++.++++|+....+... ..+...++ +.....+.+.+..... ....+.||||||+|.+
T Consensus 69 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~------~~~~~~vlilDEi~~l 142 (387)
T 2v1u_A 69 EARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS------RLRGIYIIVLDEIDFL 142 (387)
T ss_dssp HHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT------TSCSEEEEEEETTTHH
T ss_pred HHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh------ccCCeEEEEEccHhhh
Confidence 88899999876554321 11111111 1112222222211110 1234679999999999
Q ss_pred Ccc--chhHHHHHHHHhh----cCCCcEEEEecccc--hhhhhhccccc--cccccCCCCHHHHHHHHHHHHHH--cCCC
Q 003873 485 SAG--DRGGIADLIASIK----ISKIPIICICNDRY--SQKLKSLVNYC--SDLRFRKPRKQEIAKRLMQIANA--EGLE 552 (790)
Q Consensus 485 ~~~--~~~~l~~Ll~~i~----~s~~pII~I~nd~~--~~~l~~L~sR~--~~I~F~~pt~~ei~~iL~~I~~~--Egi~ 552 (790)
... .+..+..+++... ..++.+|+++|... ....+.+.+|+ ..+.|.+++.+++..+|...+.. .+..
T Consensus 143 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~ 222 (387)
T 2v1u_A 143 PKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGV 222 (387)
T ss_dssp HHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTT
T ss_pred cccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCC
Confidence 876 6677778887665 45667788887642 22336777888 57999999999999999998875 5678
Q ss_pred CCHHHHHHHHHHcc---CCHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHh
Q 003873 553 VNEIALEELADRVN---GDIRMAINQLQYMSL-----SLSVIKYDDIRQRLLS 597 (790)
Q Consensus 553 i~~~~l~~Ia~~s~---GDiR~aIn~Lq~~~~-----~~~~it~~~v~~~~~~ 597 (790)
+++++++.|++.+. ||+|.++++|+.+.. +...|+.+++..++..
T Consensus 223 ~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~ 275 (387)
T 2v1u_A 223 LDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAE 275 (387)
T ss_dssp BCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 89999999999998 999999999987654 2356888887765543
No 25
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.77 E-value=2.1e-17 Score=181.98 Aligned_cols=232 Identities=19% Similarity=0.254 Sum_probs=159.7
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML- 421 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel- 421 (790)
..+|..+|.| ++|+|++..++.|..||..+... ..+..++++|+||+|+||||+++.+++.+
T Consensus 7 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~--------------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 7 DSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRN--------------PGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp GGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHS--------------TTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcC--------------CCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578899999 78999999999999999986431 00122489999999999999999999999
Q ss_pred ---CCcEEEEeCCCCCCchh--hhhhcccC------CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchh
Q 003873 422 ---GFQAIEVNASDSRGKAD--AKISKGIG------GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG 490 (790)
Q Consensus 422 ---g~~iiEinaSd~rsk~~--~~i~~~~g------~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~ 490 (790)
++.++++|++....... ..+...++ +.....+.+.+...... ...+.||||||+|.+......
T Consensus 70 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~------~~~~~vlilDE~~~l~~~~~~ 143 (389)
T 1fnn_A 70 DKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE------RDLYMFLVLDDAFNLAPDILS 143 (389)
T ss_dssp TSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH------TTCCEEEEEETGGGSCHHHHH
T ss_pred hhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhh------cCCeEEEEEECccccchHHHH
Confidence 67899999876554221 11111111 11112222222221110 234679999999999433333
Q ss_pred HHHHHHHHhhc---CCCcEEEEecccc--hhhhhhcccccc--ccccCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHH
Q 003873 491 GIADLIASIKI---SKIPIICICNDRY--SQKLKSLVNYCS--DLRFRKPRKQEIAKRLMQIANAE--GLEVNEIALEEL 561 (790)
Q Consensus 491 ~l~~Ll~~i~~---s~~pII~I~nd~~--~~~l~~L~sR~~--~I~F~~pt~~ei~~iL~~I~~~E--gi~i~~~~l~~I 561 (790)
.+..+++.... .++.||+++|+.. ....+.+.+|+. .+.|.+++.+++..+|...+... ...+++++++.|
T Consensus 144 ~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 223 (389)
T 1fnn_A 144 TFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMI 223 (389)
T ss_dssp HHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHH
T ss_pred HHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Confidence 33333332233 5778888888642 222356677776 59999999999999999988652 347899999999
Q ss_pred HHHc---------cCCHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHh
Q 003873 562 ADRV---------NGDIRMAINQLQYMSL-----SLSVIKYDDIRQRLLS 597 (790)
Q Consensus 562 a~~s---------~GDiR~aIn~Lq~~~~-----~~~~it~~~v~~~~~~ 597 (790)
++.+ .||+|.+++.|+.++. ....++.+++..++..
T Consensus 224 ~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~ 273 (389)
T 1fnn_A 224 ADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKE 273 (389)
T ss_dssp HHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 9999 8999999999987654 3456777777665543
No 26
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.77 E-value=3.2e-18 Score=188.63 Aligned_cols=226 Identities=16% Similarity=0.213 Sum_probs=161.9
Q ss_pred ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....|..+|.| ++|+|++..++.|..||..|... ..+++++|+||||||||++|+.+++++
T Consensus 9 ~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~----------------~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 9 PKVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKN----------------EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp TTTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTT----------------CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcC----------------CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999 88999999999999999986431 235799999999999999999999988
Q ss_pred -----------CCcEEEEeCCCCC-Cchh--hhhhccc-C------CCchhH-HHHHHHHhhhhccccCCCCCceEEEEe
Q 003873 422 -----------GFQAIEVNASDSR-GKAD--AKISKGI-G------GSNANS-IKELVSNEALSANMDRSKHPKTVLIMD 479 (790)
Q Consensus 422 -----------g~~iiEinaSd~r-sk~~--~~i~~~~-g------~s~~~~-i~e~l~~a~~~~~~~~~~~~~~VLIID 479 (790)
++.++++|+.... +... ..+...+ + +..... +..+.... ...+.|||||
T Consensus 70 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l---------~~~~~vlilD 140 (384)
T 2qby_B 70 EEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT---------RNIRAIIYLD 140 (384)
T ss_dssp HHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH---------SSSCEEEEEE
T ss_pred HHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh---------ccCCCEEEEE
Confidence 8999999987543 2111 0111111 0 111111 22222211 1122399999
Q ss_pred cCCCCCccc-hhH-HHHHHHHhhcCCCcEEEEecccc--hhhhhhcccc-ccccccCCCCHHHHHHHHHHHHHH--cCCC
Q 003873 480 EVDGMSAGD-RGG-IADLIASIKISKIPIICICNDRY--SQKLKSLVNY-CSDLRFRKPRKQEIAKRLMQIANA--EGLE 552 (790)
Q Consensus 480 EiD~L~~~~-~~~-l~~Ll~~i~~s~~pII~I~nd~~--~~~l~~L~sR-~~~I~F~~pt~~ei~~iL~~I~~~--Egi~ 552 (790)
|+|.+.... +.. +..++... .++.||+++|+.. ....+.+.+| +..+.|.+++.+++..+|...+.. .+..
T Consensus 141 Ei~~l~~~~~~~~~l~~l~~~~--~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~ 218 (384)
T 2qby_B 141 EVDTLVKRRGGDIVLYQLLRSD--ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGT 218 (384)
T ss_dssp TTHHHHHSTTSHHHHHHHHTSS--SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTS
T ss_pred CHHHhccCCCCceeHHHHhcCC--cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCC
Confidence 999997643 555 56666544 6777888888642 2334566677 468999999999999999998865 4567
Q ss_pred CCHHHHHHHHHHcc---CCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHh
Q 003873 553 VNEIALEELADRVN---GDIRMAINQLQYMSLS---LSVIKYDDIRQRLLS 597 (790)
Q Consensus 553 i~~~~l~~Ia~~s~---GDiR~aIn~Lq~~~~~---~~~it~~~v~~~~~~ 597 (790)
+++++++.|++.+. ||+|.++++|+.+... ...|+.+++..++..
T Consensus 219 ~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 219 YDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVD 269 (384)
T ss_dssp CCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 89999999999998 9999999999876543 256888887765543
No 27
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.76 E-value=5.6e-18 Score=186.54 Aligned_cols=200 Identities=16% Similarity=0.151 Sum_probs=131.9
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
...|+.++.+.+|+||+|++.+++.|+.++..-.. +.. .... .....+++||+||||||||++|+++|++++
T Consensus 38 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~-~~~-~~~~------~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 38 SSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVK-FPH-LFKG------NRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp ---------CCCGGGSCCGGGHHHHHHHHTHHHHH-CGG-GGCS------SCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred hhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHh-CHH-HHhc------CCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 35788899999999999999999999988763111 000 0000 113467899999999999999999999999
Q ss_pred CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--------hhHHHH
Q 003873 423 FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--------RGGIAD 494 (790)
Q Consensus 423 ~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--------~~~l~~ 494 (790)
..++.+++++..+. .++ .....++.++..+. ...+.||||||+|.|.... +..+..
T Consensus 110 ~~~~~v~~~~l~~~-------~~g-~~~~~~~~~f~~a~--------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ 173 (355)
T 2qp9_X 110 STFFSVSSSDLVSK-------WMG-ESEKLVKQLFAMAR--------ENKPSIIFIDQVDALTGTRGEGESEASRRIKTE 173 (355)
T ss_dssp CEEEEEEHHHHHSC-------C----CHHHHHHHHHHHH--------HTSSEEEEEECGGGGTC------CTHHHHHHHH
T ss_pred CCEEEeeHHHHhhh-------hcc-hHHHHHHHHHHHHH--------HcCCeEEEEechHhhcccCCCCcchHHHHHHHH
Confidence 99999988753221 122 22344566665543 2346799999999997531 112233
Q ss_pred HHHHhh-----cCCCcEEEEecccchhhhhhccccc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Q 003873 495 LIASIK-----ISKIPIICICNDRYSQKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567 (790)
Q Consensus 495 Ll~~i~-----~s~~pII~I~nd~~~~~l~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G 567 (790)
++..+. ...+.||+++|. ...+.+.+++|| ..+.|..|+.+++..+|..++...+..+++..++.|+..+.|
T Consensus 174 ll~~l~~~~~~~~~v~vI~atn~-~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G 251 (355)
T 2qp9_X 174 LLVQMNGVGNDSQGVLVLGATNI-PWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEG 251 (355)
T ss_dssp HHHHHHHCC---CCEEEEEEESC-GGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTT
T ss_pred HHHHhhcccccCCCeEEEeecCC-cccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCC
Confidence 333332 223334445553 233346777888 568899999999999999999888777899999999999988
No 28
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1e-17 Score=181.17 Aligned_cols=211 Identities=15% Similarity=0.151 Sum_probs=149.9
Q ss_pred hhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML--- 421 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel--- 421 (790)
.+-+-|.|..+ |.++++.++.|..+|...-. ...+.+++|+||||||||++++.+++++
T Consensus 11 ~l~~~~~~~~~--L~~Re~E~~~i~~~L~~~i~----------------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 11 SIRESLQKREL--LKSQVEDFTRIFLPIYDSLM----------------SSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH----------------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred hhhhccCCccc--cCCHHHHHHHHHHHHHHHhc----------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 44555666322 88899999999999987321 2357899999999999999999999999
Q ss_pred -------CCcEEEEeCCCCCCchh--hhhhcccC------CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc
Q 003873 422 -------GFQAIEVNASDSRGKAD--AKISKGIG------GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA 486 (790)
Q Consensus 422 -------g~~iiEinaSd~rsk~~--~~i~~~~g------~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~ 486 (790)
.+.++++||....+... ..+...+. +.....+..++.... .......||||||+|.|.
T Consensus 73 ~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~------~~~~~~~ii~lDE~d~l~- 145 (318)
T 3te6_A 73 SARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVP------KAKKRKTLILIQNPENLL- 145 (318)
T ss_dssp TTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC------GGGSCEEEEEEECCSSSC-
T ss_pred hhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh------hccCCceEEEEecHHHhh-
Confidence 46889999976554321 11111111 112334555555421 012456799999999999
Q ss_pred cchhHHHHHHHHhh--cCCCcEEEEecccc--hh-hhhhccccc--cccccCCCCHHHHHHHHHHHHHHcC---------
Q 003873 487 GDRGGIADLIASIK--ISKIPIICICNDRY--SQ-KLKSLVNYC--SDLRFRKPRKQEIAKRLMQIANAEG--------- 550 (790)
Q Consensus 487 ~~~~~l~~Ll~~i~--~s~~pII~I~nd~~--~~-~l~~L~sR~--~~I~F~~pt~~ei~~iL~~I~~~Eg--------- 550 (790)
.+..+..++++.. .+++.||+|+|+.. .. +.+.+++|+ ..|.|.+++.+++..+|++.+....
T Consensus 146 -~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~ 224 (318)
T 3te6_A 146 -SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVND 224 (318)
T ss_dssp -CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECT
T ss_pred -cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccc
Confidence 6778888887653 44566778888642 22 235677887 5699999999999999998876531
Q ss_pred --------------------------CCCCHHHHHHHHH---HccCCHHHHHHHHHHHHh
Q 003873 551 --------------------------LEVNEIALEELAD---RVNGDIRMAINQLQYMSL 581 (790)
Q Consensus 551 --------------------------i~i~~~~l~~Ia~---~s~GDiR~aIn~Lq~~~~ 581 (790)
+.+++++++.+++ ..+||+|.||++|..+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~ 284 (318)
T 3te6_A 225 KKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVE 284 (318)
T ss_dssp TCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Confidence 1479999999999 568999999999988754
No 29
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.75 E-value=2.3e-17 Score=176.01 Aligned_cols=207 Identities=17% Similarity=0.207 Sum_probs=146.0
Q ss_pred hhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
.|+++|.|.++++|+|++.+++.|..++...... .. -..+ -....+++||+||||||||++|+++|+++++.
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~-~~-~~~~------~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVR-PE-LFTG------LRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHC-GG-GSCG------GGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhC-HH-HHhc------CCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 6899999999999999999999999988752210 00 0000 01246899999999999999999999999999
Q ss_pred EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--------hhHHHHHH
Q 003873 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--------RGGIADLI 496 (790)
Q Consensus 425 iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--------~~~l~~Ll 496 (790)
++.+++++..+.. . +.....++.++..+. ...+.||||||+|.+.... ......++
T Consensus 82 ~~~i~~~~l~~~~-------~-~~~~~~~~~~~~~~~--------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll 145 (297)
T 3b9p_A 82 FLNISAASLTSKY-------V-GDGEKLVRALFAVAR--------HMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFL 145 (297)
T ss_dssp EEEEESTTTSSSS-------C-SCHHHHHHHHHHHHH--------HTCSEEEEEETGGGTSBCC-----CCSHHHHHHHH
T ss_pred eEEeeHHHHhhcc-------c-chHHHHHHHHHHHHH--------HcCCcEEEeccHHHhccccccCcchHHHHHHHHHH
Confidence 9999998754432 1 112233445554433 2345799999999996532 12223344
Q ss_pred HHhhc-------CCCcEEEEecccchhhhhhccccc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCC
Q 003873 497 ASIKI-------SKIPIICICNDRYSQKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGD 568 (790)
Q Consensus 497 ~~i~~-------s~~pII~I~nd~~~~~l~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GD 568 (790)
..+.. ..+.||+++|.. ....+.+++|| ..+.|..|+.++...+|..++...+..++++.+..|+..+.|.
T Consensus 146 ~~l~~~~~~~~~~~v~vi~~tn~~-~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~ 224 (297)
T 3b9p_A 146 VEFDGLPGNPDGDRIVVLAATNRP-QELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGY 224 (297)
T ss_dssp HHHHHCC------CEEEEEEESCG-GGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTC
T ss_pred HHHhcccccCCCCcEEEEeecCCh-hhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCC
Confidence 33322 223355555542 23446677787 4688899999999999999998888889999999999999998
Q ss_pred HHHHHHHH
Q 003873 569 IRMAINQL 576 (790)
Q Consensus 569 iR~aIn~L 576 (790)
.+..|..|
T Consensus 225 ~~~~l~~l 232 (297)
T 3b9p_A 225 SGSDLTAL 232 (297)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 87766544
No 30
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.75 E-value=4.1e-17 Score=179.72 Aligned_cols=204 Identities=15% Similarity=0.182 Sum_probs=142.4
Q ss_pred hhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
.++++|.|.++++|+|++.+++.|+.++...... ... . .......+++||+||||||||++|+++|+++++.
T Consensus 73 ~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~---~~~---~--~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 73 EIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLR---PDI---F--TGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp HTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHC---TTT---S--CGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred hcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhC---hHh---H--hhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 4778999999999999999999999988741110 000 0 0011356899999999999999999999999999
Q ss_pred EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--------hhHHHHHH
Q 003873 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--------RGGIADLI 496 (790)
Q Consensus 425 iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--------~~~l~~Ll 496 (790)
++.+++++..+.. . +.....++.++..+. ...+.||||||+|.|.... ...+..++
T Consensus 145 ~~~i~~~~l~~~~-------~-g~~~~~~~~~~~~a~--------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL 208 (357)
T 3d8b_A 145 FFSISASSLTSKW-------V-GEGEKMVRALFAVAR--------CQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFL 208 (357)
T ss_dssp EEEEEGGGGCCSS-------T-THHHHHHHHHHHHHH--------HTCSEEEEEETHHHHTBC------CHHHHHHHHHH
T ss_pred EEEEehHHhhccc-------c-chHHHHHHHHHHHHH--------hcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHH
Confidence 9999998654331 1 111233445554433 2346799999999986521 12233444
Q ss_pred HHhhc------CCCcEEEEecccchhhhhhcccccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCH
Q 003873 497 ASIKI------SKIPIICICNDRYSQKLKSLVNYCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDI 569 (790)
Q Consensus 497 ~~i~~------s~~pII~I~nd~~~~~l~~L~sR~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDi 569 (790)
..+.. .++.||+++|. ...+.+.+++||. .+.|..|+.++...+|..++..+++.++++.++.|+..+.|-.
T Consensus 209 ~~l~~~~~~~~~~v~vI~atn~-~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s 287 (357)
T 3d8b_A 209 VQLDGATTSSEDRILVVGATNR-PQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFS 287 (357)
T ss_dssp HHHHC----CCCCEEEEEEESC-GGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCC
T ss_pred HHHhcccccCCCCEEEEEecCC-hhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCC
Confidence 44431 23344555554 2334467788886 6889999999999999999998899999999999999998833
Q ss_pred HHHH
Q 003873 570 RMAI 573 (790)
Q Consensus 570 R~aI 573 (790)
...|
T Consensus 288 ~~dl 291 (357)
T 3d8b_A 288 GADM 291 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 31
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.74 E-value=2.3e-17 Score=186.73 Aligned_cols=209 Identities=13% Similarity=0.162 Sum_probs=149.2
Q ss_pred CCcccc-C--CHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-----CCcE
Q 003873 354 TPNEIV-G--NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML-----GFQA 425 (790)
Q Consensus 354 sl~dLv-G--~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel-----g~~i 425 (790)
+|++++ | |......+..+... + .. .+++||+||||+||||+|+++++++ +..+
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~------------~------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v 163 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKH------------P------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRV 163 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHS------------T------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCE
T ss_pred ChhhcCCCCchHHHHHHHHHHHhC------------C------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeE
Confidence 788888 5 44445555554443 0 11 5789999999999999999999988 8888
Q ss_pred EEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc--cchhHHHHHHHHhhcCC
Q 003873 426 IEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA--GDRGGIADLIASIKISK 503 (790)
Q Consensus 426 iEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~--~~~~~l~~Ll~~i~~s~ 503 (790)
+++++.+.... +...+... .+..+.... .....||||||++.+.. ..+..+..+++.+....
T Consensus 164 ~~v~~~~~~~~----~~~~~~~~---~~~~~~~~~---------~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~ 227 (440)
T 2z4s_A 164 MYITSEKFLND----LVDSMKEG---KLNEFREKY---------RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSG 227 (440)
T ss_dssp EEEEHHHHHHH----HHHHHHTT---CHHHHHHHH---------TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTT
T ss_pred EEeeHHHHHHH----HHHHHHcc---cHHHHHHHh---------cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCC
Confidence 99887643110 00000000 011111110 11456999999999986 45566667776655566
Q ss_pred CcEEEEecccchh---hhhhccccc---cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 003873 504 IPIICICNDRYSQ---KLKSLVNYC---SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQ 577 (790)
Q Consensus 504 ~pII~I~nd~~~~---~l~~L~sR~---~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq 577 (790)
..||++++..... ..+.|++|| ..+.|.+|+.+++..+|...+..+++.+++++++.|+..+.||+|.+.+.|+
T Consensus 228 ~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~ 307 (440)
T 2z4s_A 228 KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_dssp CEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 6777777654433 447888888 6899999999999999999999999999999999999999999999999997
Q ss_pred HHHhc----CCCCCHHHHHHHHHh
Q 003873 578 YMSLS----LSVIKYDDIRQRLLS 597 (790)
Q Consensus 578 ~~~~~----~~~it~~~v~~~~~~ 597 (790)
.+... +..|+.+.+.+++..
T Consensus 308 ~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 308 KLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHH
Confidence 66532 456888888776543
No 32
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.9e-17 Score=179.50 Aligned_cols=226 Identities=21% Similarity=0.305 Sum_probs=150.1
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhh--hhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNE--KFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~--~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.+.+++--..+|+||.|.+.++++|++++..-.. ..+. . .+...++++|||||||||||++|+++|.++
T Consensus 136 ~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~----~-----~gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 136 LMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFE----S-----LGIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp SCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHH----H-----HTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred hccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHH----h-----CCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 3444555556899999999999999988764111 0111 0 112467899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-----------hh
Q 003873 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-----------RG 490 (790)
Q Consensus 422 g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-----------~~ 490 (790)
+++++.+++++..+++ +| .....++++|..+. ...++||||||+|.+.... +.
T Consensus 207 ~~~f~~v~~s~l~sk~-------vG-ese~~vr~lF~~Ar--------~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~ 270 (405)
T 4b4t_J 207 DCKFIRVSGAELVQKY-------IG-EGSRMVRELFVMAR--------EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQR 270 (405)
T ss_dssp TCEEEEEEGGGGSCSS-------TT-HHHHHHHHHHHHHH--------HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHH
T ss_pred CCCceEEEhHHhhccc-------cc-hHHHHHHHHHHHHH--------HhCCceEeeecchhhccCCCCCCCCCcHHHHH
Confidence 9999999998765442 22 22346888888765 2457899999999986521 12
Q ss_pred HHHHHHHHhhc--CCCcEEEEecccchhhh-hhccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003873 491 GIADLIASIKI--SKIPIICICNDRYSQKL-KSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADR 564 (790)
Q Consensus 491 ~l~~Ll~~i~~--s~~pII~I~nd~~~~~l-~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~ 564 (790)
.+..|+..+.. ....|++|++++....+ +.|++ |+. .|.|..|+.++...+|+..+.+..+. ++-.++.|++.
T Consensus 271 ~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~ 349 (405)
T 4b4t_J 271 TMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEK 349 (405)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHH
T ss_pred HHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHH
Confidence 35556655542 23344444333344444 55654 554 58999999999999998777554432 12237888888
Q ss_pred ccC----CHHHHHHHHHHHHhc--CCCCCHHHHHHHH
Q 003873 565 VNG----DIRMAINQLQYMSLS--LSVIKYDDIRQRL 595 (790)
Q Consensus 565 s~G----DiR~aIn~Lq~~~~~--~~~it~~~v~~~~ 595 (790)
+.| ||+.+++..-+.+.. ...|+.+++..++
T Consensus 350 t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al 386 (405)
T 4b4t_J 350 MNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAV 386 (405)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 765 777776655444433 3456776665443
No 33
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.73 E-value=3e-17 Score=175.25 Aligned_cols=230 Identities=15% Similarity=0.207 Sum_probs=147.6
Q ss_pred ccccCCHHHHHHHHHHHHhh-hhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHW-NEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w-~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~r 434 (790)
++|+|++.+++.|..++... ....+.... .....++++||+||||||||++|+++|+.++..++.+++++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~-------~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~ 87 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPL-------RHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 87 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHH-------HHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGS
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccc-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcc
Confidence 35999999999999888762 211110000 0112467899999999999999999999999999999987654
Q ss_pred CchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc------------hhHHHHHHHHhh--
Q 003873 435 GKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD------------RGGIADLIASIK-- 500 (790)
Q Consensus 435 sk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~------------~~~l~~Ll~~i~-- 500 (790)
.. ..++......+.+++........ ....+.||||||+|.+.... ++.+..+++...
T Consensus 88 ~~------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 158 (310)
T 1ofh_A 88 EV------GYVGKEVDSIIRDLTDSAGGAID---AVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVS 158 (310)
T ss_dssp SC------CSGGGSTTHHHHHHHHTTTTCHH---HHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEE
T ss_pred cC------CccCccHHHHHHHHHHHhhHHHh---hccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEe
Confidence 31 01111112234454443210000 00124699999999998754 344444444210
Q ss_pred -------cCCCcEEEEec---ccchhhhhhcccccc-ccccCCCCHHHHHHHHH-----------HHHHHcCC--CCCHH
Q 003873 501 -------ISKIPIICICN---DRYSQKLKSLVNYCS-DLRFRKPRKQEIAKRLM-----------QIANAEGL--EVNEI 556 (790)
Q Consensus 501 -------~s~~pII~I~n---d~~~~~l~~L~sR~~-~I~F~~pt~~ei~~iL~-----------~I~~~Egi--~i~~~ 556 (790)
...+.||++++ .......++|++||. .+.|.+|+.+++..+|. ..+..++. .++++
T Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (310)
T 1ofh_A 159 TKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTD 238 (310)
T ss_dssp ETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHH
T ss_pred cccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHH
Confidence 12344455542 223344578999995 59999999999999888 23334553 68999
Q ss_pred HHHHHHHHc--------cCCHHHHHHHHHHHHhc--------CC---CCCHHHHHHHHHhccCC
Q 003873 557 ALEELADRV--------NGDIRMAINQLQYMSLS--------LS---VIKYDDIRQRLLSSAKD 601 (790)
Q Consensus 557 ~l~~Ia~~s--------~GDiR~aIn~Lq~~~~~--------~~---~it~~~v~~~~~~~~kd 601 (790)
+++.|++.+ .||+|.+.+.|+.+... .. .|+.+++..++....++
T Consensus 239 a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~~ 302 (310)
T 1ofh_A 239 AVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVEN 302 (310)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSSC
T ss_pred HHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhhh
Confidence 999999998 79999999999875411 11 26777776655443333
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.73 E-value=4.9e-17 Score=174.23 Aligned_cols=201 Identities=18% Similarity=0.192 Sum_probs=142.6
Q ss_pred cccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC-------CcEEEEe
Q 003873 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG-------FQAIEVN 429 (790)
Q Consensus 357 dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg-------~~iiEin 429 (790)
+|+|++.+++.|..++..+........ .+ ........++||+||||||||++|+++|+.++ ..+++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~---~g--~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 106 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQK---LG--LAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT 106 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHH---HT--CCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHH---cC--CCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc
Confidence 799999999999988876432111000 00 01123457899999999999999999999983 3788888
Q ss_pred CCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc------chhHHHHHHHHhhcC-
Q 003873 430 ASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG------DRGGIADLIASIKIS- 502 (790)
Q Consensus 430 aSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~------~~~~l~~Ll~~i~~s- 502 (790)
+++..+. .+ +.....+..++..+ .+.||||||+|.|... ....+..|+..+...
T Consensus 107 ~~~l~~~-------~~-g~~~~~~~~~~~~~-----------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~ 167 (309)
T 3syl_A 107 RDDLVGQ-------YI-GHTAPKTKEVLKRA-----------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR 167 (309)
T ss_dssp GGGTCCS-------ST-TCHHHHHHHHHHHH-----------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT
T ss_pred HHHhhhh-------cc-cccHHHHHHHHHhc-----------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC
Confidence 7654322 11 12223345555443 2359999999998532 334455555555444
Q ss_pred -CCcEEEEecccc----hhhhhhccccc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--------cCC
Q 003873 503 -KIPIICICNDRY----SQKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV--------NGD 568 (790)
Q Consensus 503 -~~pII~I~nd~~----~~~l~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s--------~GD 568 (790)
.+.||+++|... ....++|++|| ..+.|.+|+.+++..++..++...++.++++++..|+..+ .||
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn 247 (309)
T 3syl_A 168 DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFAN 247 (309)
T ss_dssp TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCH
T ss_pred CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCc
Confidence 445666666432 12237899999 8899999999999999999999999999999999999864 499
Q ss_pred HHHHHHHHHHHHh
Q 003873 569 IRMAINQLQYMSL 581 (790)
Q Consensus 569 iR~aIn~Lq~~~~ 581 (790)
+|.+.+.|+.++.
T Consensus 248 ~r~l~~~l~~a~~ 260 (309)
T 3syl_A 248 ARSIRNALDRARL 260 (309)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987764
No 35
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.73 E-value=2.4e-16 Score=164.43 Aligned_cols=204 Identities=17% Similarity=0.177 Sum_probs=132.2
Q ss_pred CCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCC
Q 003873 352 PKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431 (790)
Q Consensus 352 P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaS 431 (790)
+.+|++|+|++.+++.|+.++....... ... ..+...++++||+||||||||++|+++|++++.+++.++++
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~---~~~-----~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~ 73 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPE---RFL-----QLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGA 73 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC--------------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHH---HHH-----HcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechH
Confidence 3579999999999999988876422110 000 01123568899999999999999999999999999999998
Q ss_pred CCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc------------cchhHHHHHHHHh
Q 003873 432 DSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA------------GDRGGIADLIASI 499 (790)
Q Consensus 432 d~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~------------~~~~~l~~Ll~~i 499 (790)
+..... .+.....+..++..+.. ..+.||||||+|.+.. ..+..+..++..+
T Consensus 74 ~~~~~~--------~~~~~~~~~~~~~~a~~--------~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~ 137 (262)
T 2qz4_A 74 EFVEVI--------GGLGAARVRSLFKEARA--------RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEM 137 (262)
T ss_dssp TTSSSS--------TTHHHHHHHHHHHHHHH--------TCSEEEEEECC-------------------CHHHHHHHHHH
T ss_pred HHHhhc--------cChhHHHHHHHHHHHHh--------cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHh
Confidence 754321 11122345555555431 2357999999999943 2334566666655
Q ss_pred hc----CCCcEEEEecccchhhhhhccc--cc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHccCCH-H
Q 003873 500 KI----SKIPIICICNDRYSQKLKSLVN--YC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIA-LEELADRVNGDI-R 570 (790)
Q Consensus 500 ~~----s~~pII~I~nd~~~~~l~~L~s--R~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~-l~~Ia~~s~GDi-R 570 (790)
.. ..+.||+++|. .....+.+++ |+ ..+.|..|+.++...++...+...++..+... +..|+..+.|.. |
T Consensus 138 ~~~~~~~~~~vi~~tn~-~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~ 216 (262)
T 2qz4_A 138 DGMGTTDHVIVLASTNR-ADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGA 216 (262)
T ss_dssp HTCCTTCCEEEEEEESC-GGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHH
T ss_pred hCcCCCCCEEEEecCCC-hhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHH
Confidence 43 22334444543 2223355665 66 56889999999999999999998888887664 578888877643 3
Q ss_pred HHHHHHHHHH
Q 003873 571 MAINQLQYMS 580 (790)
Q Consensus 571 ~aIn~Lq~~~ 580 (790)
.+.++++.++
T Consensus 217 ~l~~l~~~a~ 226 (262)
T 2qz4_A 217 DIANICNEAA 226 (262)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 36
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=99.73 E-value=3.9e-18 Score=156.25 Aligned_cols=76 Identities=22% Similarity=0.441 Sum_probs=68.4
Q ss_pred CCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCC---CCcchHHHHHHhCCceeCHHHHHHHHh
Q 003873 202 PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDED---IAGAKSTKAKELGTPFLTEDGLFDMIR 278 (790)
Q Consensus 202 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~---~g~~K~~kA~~~~i~ii~e~~f~~~l~ 278 (790)
..+|+|++|||||+|+. +|+|++++|+.+||+|+++||++|||||+|++ ++ +|++||++|||+||+|+ |++++.
T Consensus 8 ~~~l~G~~~ViTG~l~~-~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~g-sKl~kA~~lgI~IvsE~-~l~~~~ 84 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMN-KKMEEVKEANIRVVSED-FLQDVS 84 (113)
T ss_dssp CCSSSSCEEEECSCCSS-CHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCC-HHHHHHHHTTCCEECTH-HHHHHH
T ss_pred CCCcCCCEEEEEecCCC-CHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCC-hHHHHHHHCCCcEEeHH-HHHHHH
Confidence 34799999999999965 99999999999999999999999999999954 54 99999999999999999 666666
Q ss_pred hc
Q 003873 279 AS 280 (790)
Q Consensus 279 ~~ 280 (790)
..
T Consensus 85 ~~ 86 (113)
T 2cok_A 85 AS 86 (113)
T ss_dssp SC
T ss_pred hh
Confidence 53
No 37
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.4e-16 Score=177.11 Aligned_cols=228 Identities=17% Similarity=0.233 Sum_probs=151.5
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
+.+-+++--..+|+||.|.++++++|++.+.....+ .. .... .+...++++|||||||||||++|+++|.+++
T Consensus 169 ~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~-pe-~f~~-----~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 169 SVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTH-PE-LYEE-----MGIKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHC-CH-HHHH-----HTCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred eeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhC-HH-HHHh-----CCCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 445667766779999999999999999888752211 00 0000 1124679999999999999999999999999
Q ss_pred CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-----------hhH
Q 003873 423 FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-----------RGG 491 (790)
Q Consensus 423 ~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-----------~~~ 491 (790)
++++.+++++..+++ +| .....++.+|..+. ...++||||||+|.+.... ...
T Consensus 242 ~~fi~v~~s~l~sk~-------vG-esek~ir~lF~~Ar--------~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~ 305 (437)
T 4b4t_I 242 ATFLRIVGSELIQKY-------LG-DGPRLCRQIFKVAG--------ENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRT 305 (437)
T ss_dssp CEEEEEESGGGCCSS-------SS-HHHHHHHHHHHHHH--------HTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHH
T ss_pred CCEEEEEHHHhhhcc-------Cc-hHHHHHHHHHHHHH--------hcCCcEEEEehhhhhcccCCCCCCCccHHHHHH
Confidence 999999998754432 22 22345777777765 2457899999999986521 123
Q ss_pred HHHHHHHhhc--CCCcEEEEecccchhhh-hhccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 003873 492 IADLIASIKI--SKIPIICICNDRYSQKL-KSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEI-ALEELADR 564 (790)
Q Consensus 492 l~~Ll~~i~~--s~~pII~I~nd~~~~~l-~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~-~l~~Ia~~ 564 (790)
+..++..+.. ....||+|++++....+ +.|++ |+. .|.|..|+.++...+|+..+.+.. ++++ .++.||+.
T Consensus 306 l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~ 383 (437)
T 4b4t_I 306 MLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTT 383 (437)
T ss_dssp HHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHH
T ss_pred HHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHh
Confidence 4555555532 22234444333344455 55654 544 489999999999999987775443 3332 37788887
Q ss_pred ccC----CHHHHHHHHHHHHhc--CCCCCHHHHHHHH
Q 003873 565 VNG----DIRMAINQLQYMSLS--LSVIKYDDIRQRL 595 (790)
Q Consensus 565 s~G----DiR~aIn~Lq~~~~~--~~~it~~~v~~~~ 595 (790)
+.| ||+.+++..-+.+.. ...|+.+++..++
T Consensus 384 T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al 420 (437)
T 4b4t_I 384 KDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAK 420 (437)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 755 777776655444433 4557777665543
No 38
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.72 E-value=1.3e-16 Score=166.99 Aligned_cols=225 Identities=15% Similarity=0.159 Sum_probs=147.5
Q ss_pred hhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
+|.++|.+.+|+||+|++.+++.|...+....... ... ......++++||+|||||||||+|+++|.+++.+
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~---~~~-----~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 72 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPS---RFQ-----KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 72 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGG---GC----------CCCCEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHH---HHH-----HcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC
Confidence 69999999999999999999998887665321100 000 0112346789999999999999999999999999
Q ss_pred EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccch-----------hHHH
Q 003873 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR-----------GGIA 493 (790)
Q Consensus 425 iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~-----------~~l~ 493 (790)
++.+++++..... . +.....+..++..+. ...+.+|||||+|.+....+ ..+.
T Consensus 73 ~~~i~~~~~~~~~-------~-~~~~~~~~~~~~~a~--------~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 136 (257)
T 1lv7_A 73 FFTISGSDFVEMF-------V-GVGASRVRDMFEQAK--------KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN 136 (257)
T ss_dssp EEEECSCSSTTSC-------C-CCCHHHHHHHHHHHH--------TTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHH
T ss_pred EEEEeHHHHHHHh-------h-hhhHHHHHHHHHHHH--------HcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHH
Confidence 9999988654321 1 122345666666543 23457999999988765321 2344
Q ss_pred HHHHHhhc----CCCcEEEEecccchhhhhhccc--cc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Q 003873 494 DLIASIKI----SKIPIICICNDRYSQKLKSLVN--YC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEI-ALEELADRV 565 (790)
Q Consensus 494 ~Ll~~i~~----s~~pII~I~nd~~~~~l~~L~s--R~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~-~l~~Ia~~s 565 (790)
.++..+.. ..+.||+++|.. ....+.+++ |+ ..+.|..|+.++...++...+... .+.++ .+..|+..+
T Consensus 137 ~ll~~l~~~~~~~~~~vI~~tn~~-~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~--~l~~~~~~~~la~~~ 213 (257)
T 1lv7_A 137 QMLVEMDGFEGNEGIIVIAATNRP-DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV--PLAPDIDAAIIARGT 213 (257)
T ss_dssp HHHHHHHTCCSSSCEEEEEEESCT-TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTC
T ss_pred HHHHHhhCcccCCCEEEEEeeCCc-hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC--CCCccccHHHHHHHc
Confidence 55554432 223344455542 222244544 44 357888999999999988877543 34333 367788889
Q ss_pred cC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHHH
Q 003873 566 NG-DIRMAINQLQYMSLS-----LSVIKYDDIRQRLL 596 (790)
Q Consensus 566 ~G-DiR~aIn~Lq~~~~~-----~~~it~~~v~~~~~ 596 (790)
.| +.|.+.++++.++.. ...|+.+++..++.
T Consensus 214 ~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 214 PGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 99 888877776554322 35678887776543
No 39
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.72 E-value=2.9e-17 Score=177.89 Aligned_cols=193 Identities=17% Similarity=0.199 Sum_probs=139.5
Q ss_pred CCCcccc-C--CHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEE
Q 003873 353 KTPNEIV-G--NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAI 426 (790)
Q Consensus 353 ~sl~dLv-G--~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~ii 426 (790)
.+|++++ | |......+..++..- ....+++||+|||||||||+|+++++++ +..++
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~------------------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~ 69 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENL------------------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVI 69 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTT------------------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCc------------------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 3788887 4 555666666666540 0135789999999999999999999999 89999
Q ss_pred EEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc--cchhHHHHHHHHhhcCCC
Q 003873 427 EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA--GDRGGIADLIASIKISKI 504 (790)
Q Consensus 427 EinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~--~~~~~l~~Ll~~i~~s~~ 504 (790)
++++.+........+.. .....+.... ....||||||++.+.. ..+..+..+++.+.....
T Consensus 70 ~i~~~~~~~~~~~~~~~-------~~~~~~~~~~----------~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~ 132 (324)
T 1l8q_A 70 YSSADDFAQAMVEHLKK-------GTINEFRNMY----------KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEK 132 (324)
T ss_dssp EEEHHHHHHHHHHHHHH-------TCHHHHHHHH----------HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTC
T ss_pred EEEHHHHHHHHHHHHHc-------CcHHHHHHHh----------cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCC
Confidence 99876431110000000 0011111110 1246999999999986 445566666665555666
Q ss_pred cEEEEecccch---hhhhhccccc---cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 003873 505 PIICICNDRYS---QKLKSLVNYC---SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578 (790)
Q Consensus 505 pII~I~nd~~~---~~l~~L~sR~---~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~ 578 (790)
+||++++.... ...+.|.+|+ ..+.|.+ +.+++..+|...+...++.+++++++.|+..+ ||+|.+.+.|+.
T Consensus 133 ~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~ 210 (324)
T 1l8q_A 133 QIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKL 210 (324)
T ss_dssp EEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHH
T ss_pred eEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHH
Confidence 78877775433 3447788888 6799999 99999999999999999999999999999999 999999999987
Q ss_pred HHhc
Q 003873 579 MSLS 582 (790)
Q Consensus 579 ~~~~ 582 (790)
++..
T Consensus 211 ~~~~ 214 (324)
T 1l8q_A 211 IKLK 214 (324)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7654
No 40
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.5e-16 Score=178.60 Aligned_cols=221 Identities=22% Similarity=0.290 Sum_probs=146.5
Q ss_pred hhhcCCCCCccccCCHHHHHHHHHHHHhhhhh--hhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 347 TEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK--FLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 347 ~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~--~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
+++--..+|+||.|.+.++++|+.++.....+ .+. . .+..+++++|||||||||||++|+++|.+++++
T Consensus 172 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~----~-----~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 172 SFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQ----R-----VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp EEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHH----H-----HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred eccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHH----h-----CCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 33334458999999999999999988753221 111 0 112467999999999999999999999999999
Q ss_pred EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-----------hhHHH
Q 003873 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-----------RGGIA 493 (790)
Q Consensus 425 iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-----------~~~l~ 493 (790)
++.+++++..+++ +| .....++.+|..+. ...++||||||+|.+.... ...+.
T Consensus 243 ~~~v~~s~l~sk~-------~G-ese~~ir~~F~~A~--------~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~ 306 (437)
T 4b4t_L 243 FIFSPASGIVDKY-------IG-ESARIIREMFAYAK--------EHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLM 306 (437)
T ss_dssp EEEEEGGGTCCSS-------SS-HHHHHHHHHHHHHH--------HSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHH
T ss_pred EEEEehhhhcccc-------ch-HHHHHHHHHHHHHH--------hcCCceeeeecccccccccccCCCCcchHHHHHHH
Confidence 9999998765443 22 12345777777665 2457899999999986421 12344
Q ss_pred HHHHHhhc----CCCcEEEEecccchhhh-hhcccc--c-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 003873 494 DLIASIKI----SKIPIICICNDRYSQKL-KSLVNY--C-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV 565 (790)
Q Consensus 494 ~Ll~~i~~----s~~pII~I~nd~~~~~l-~~L~sR--~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s 565 (790)
.|+..+.. ..+.||++|| ....+ +.|+++ + ..|.|..|+.++...+|+..+....+. ++..+..|+..+
T Consensus 307 ~lL~~lDg~~~~~~vivI~ATN--rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t 383 (437)
T 4b4t_L 307 ELLTQMDGFDNLGQTKIIMATN--RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMS 383 (437)
T ss_dssp HHHHHHHSSSCTTSSEEEEEES--STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTC
T ss_pred HHHHHhhcccCCCCeEEEEecC--CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhC
Confidence 55655532 2233444454 33344 556543 3 358999999999999998877654432 122377888877
Q ss_pred cC----CHHHHHHHHHHHHh--cCCCCCHHHHHHHH
Q 003873 566 NG----DIRMAINQLQYMSL--SLSVIKYDDIRQRL 595 (790)
Q Consensus 566 ~G----DiR~aIn~Lq~~~~--~~~~it~~~v~~~~ 595 (790)
.| ||+.+++..-+.+. ....|+.+++..++
T Consensus 384 ~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al 419 (437)
T 4b4t_L 384 DGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAV 419 (437)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 65 77777765444443 34557777665443
No 41
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2e-16 Score=177.48 Aligned_cols=222 Identities=17% Similarity=0.207 Sum_probs=146.1
Q ss_pred hhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhh--hhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK--FLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~--~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
|=+++--..+|+||.|.+.++++|++++.....+ .+. . .+...++++|||||||||||++|+++|.+++
T Consensus 198 m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~----~-----~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 198 MTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFA----T-----LGIDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHH----H-----HTCCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred eeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHH----H-----CCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 3344433468999999999999999887642111 111 0 1124689999999999999999999999999
Q ss_pred CcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-----------hhH
Q 003873 423 FQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-----------RGG 491 (790)
Q Consensus 423 ~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-----------~~~ 491 (790)
++++.+++++..++. +| .....++.+|..+. ...++||||||+|.+.... ...
T Consensus 269 ~~fi~vs~s~L~sk~-------vG-esek~ir~lF~~Ar--------~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~ 332 (467)
T 4b4t_H 269 ATFIRVIGSELVQKY-------VG-EGARMVRELFEMAR--------TKKACIIFFDEIDAVGGARFDDGAGGDNEVQRT 332 (467)
T ss_dssp CEEEEEEGGGGCCCS-------SS-HHHHHHHHHHHHHH--------HTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHH
T ss_pred CCeEEEEhHHhhccc-------CC-HHHHHHHHHHHHHH--------hcCCceEeecccccccccccCcCCCccHHHHHH
Confidence 999999988754432 22 22345778887765 2457899999999986521 123
Q ss_pred HHHHHHHhhc--CCCcEEEEecccchhhh-hhccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 003873 492 IADLIASIKI--SKIPIICICNDRYSQKL-KSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEI-ALEELADR 564 (790)
Q Consensus 492 l~~Ll~~i~~--s~~pII~I~nd~~~~~l-~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~-~l~~Ia~~ 564 (790)
+..++..+.. ....||+|++++....+ +.|++ |+. .|.|..|+.++...+|+..+....+ +.+ .++.|++.
T Consensus 333 l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l--~~dvdl~~LA~~ 410 (467)
T 4b4t_H 333 MLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV--ERGIRWELISRL 410 (467)
T ss_dssp HHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB--CSSCCHHHHHHH
T ss_pred HHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC--CCCCCHHHHHHH
Confidence 4455555432 23345444433344445 45554 554 4899999999999999877754433 322 36778888
Q ss_pred ccC----CHHHHHHHHHHHHh--cCCCCCHHHHHH
Q 003873 565 VNG----DIRMAINQLQYMSL--SLSVIKYDDIRQ 593 (790)
Q Consensus 565 s~G----DiR~aIn~Lq~~~~--~~~~it~~~v~~ 593 (790)
+.| ||+.+++..-+.+. ....|+.+++..
T Consensus 411 T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~ 445 (467)
T 4b4t_H 411 CPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLK 445 (467)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 766 77777665443332 345566665544
No 42
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.71 E-value=1.1e-16 Score=169.58 Aligned_cols=224 Identities=18% Similarity=0.248 Sum_probs=145.4
Q ss_pred hhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEE
Q 003873 347 TEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426 (790)
Q Consensus 347 ~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ii 426 (790)
++...+.++++|+|++.+++.|..++.......- .... .+....+++||+||||||||++|+++|++++..++
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~--~~~~-----~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPE--LFEK-----VGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHH--HHHH-----HCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHH--HHHh-----cCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 3445567899999999999999998876322100 0000 01134678999999999999999999999999999
Q ss_pred EEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc-----------cchhHHHHH
Q 003873 427 EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA-----------GDRGGIADL 495 (790)
Q Consensus 427 EinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~-----------~~~~~l~~L 495 (790)
.+++++..+... +.....+..++..+. ...+.||||||+|.+.. ..+..+..+
T Consensus 81 ~v~~~~~~~~~~--------~~~~~~~~~~~~~~~--------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~l 144 (285)
T 3h4m_A 81 RVVGSELVKKFI--------GEGASLVKDIFKLAK--------EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQL 144 (285)
T ss_dssp EEEGGGGCCCST--------THHHHHHHHHHHHHH--------HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHH
T ss_pred EEehHHHHHhcc--------chHHHHHHHHHHHHH--------HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHH
Confidence 999876433211 111233445554433 23457999999999843 123455556
Q ss_pred HHHhhc----CCCcEEEEecccchhhh-hhccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Q 003873 496 IASIKI----SKIPIICICNDRYSQKL-KSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567 (790)
Q Consensus 496 l~~i~~----s~~pII~I~nd~~~~~l-~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G 567 (790)
++.+.. ..+.||+++|. ...+ +.+++ |+. .+.|.+|+.++...+|...+...++. .+..+..|+..+.|
T Consensus 145 l~~~~~~~~~~~~~vI~ttn~--~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g 221 (285)
T 3h4m_A 145 LAEMDGFDARGDVKIIGATNR--PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEG 221 (285)
T ss_dssp HHHHHTTCSSSSEEEEEECSC--GGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTT
T ss_pred HHHhhCCCCCCCEEEEEeCCC--chhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCC
Confidence 655431 23334445543 3333 45555 653 69999999999999999887655543 22346777877766
Q ss_pred ----CHHHHHHHHHHHHhc--CCCCCHHHHHHHHH
Q 003873 568 ----DIRMAINQLQYMSLS--LSVIKYDDIRQRLL 596 (790)
Q Consensus 568 ----DiR~aIn~Lq~~~~~--~~~it~~~v~~~~~ 596 (790)
|++.+++.....+.. ...|+.+++.+++.
T Consensus 222 ~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~ 256 (285)
T 3h4m_A 222 CVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVE 256 (285)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHH
Confidence 666666666555543 45688888876553
No 43
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.6e-16 Score=172.70 Aligned_cols=202 Identities=16% Similarity=0.177 Sum_probs=139.3
Q ss_pred hhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-CCcEE
Q 003873 348 EKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML-GFQAI 426 (790)
Q Consensus 348 eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel-g~~ii 426 (790)
..+.+.+++||+|++.+++.|++++.. ...+..- ..+ ....++++||+||||||||++|+++|+++ +..++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~-p~~~~~~-~~~------~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVIL-PIKFPHL-FTG------KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHH-HHHCGGG-SCT------TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHH-HHhCHHH-HhC------CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 456677999999999999999988863 2111000 000 01346899999999999999999999999 88999
Q ss_pred EEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--------hhHHHHHHHH
Q 003873 427 EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--------RGGIADLIAS 498 (790)
Q Consensus 427 EinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--------~~~l~~Ll~~ 498 (790)
.+++++..+.. ++ .....++.++..+. ...+.||||||+|.+.... ...+..++..
T Consensus 76 ~i~~~~l~~~~-------~g-~~~~~~~~lf~~a~--------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 139 (322)
T 1xwi_A 76 SISSSDLVSKW-------LG-ESEKLVKNLFQLAR--------ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQ 139 (322)
T ss_dssp EEECCSSCCSS-------CC-SCHHHHHHHHHHHH--------HTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHH
T ss_pred EEEhHHHHhhh-------hh-HHHHHHHHHHHHHH--------hcCCcEEEeecHHHhccccccccchHHHHHHHHHHHH
Confidence 99998754331 22 22345666666543 2346799999999985421 1223344444
Q ss_pred hhc-----CCCcEEEEecccchhhhhhccccc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHH
Q 003873 499 IKI-----SKIPIICICNDRYSQKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMA 572 (790)
Q Consensus 499 i~~-----s~~pII~I~nd~~~~~l~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~a 572 (790)
+.. ..+.||+++|. .....+.+++|+ ..+.|..|+.++...+|...+...+..+++..+..|++.+.|-....
T Consensus 140 ld~~~~~~~~v~vI~atn~-~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgad 218 (322)
T 1xwi_A 140 MQGVGVDNDGILVLGATNI-PWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGAD 218 (322)
T ss_dssp HHCSSSCCTTEEEEEEESC-TTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHH
T ss_pred HhcccccCCCEEEEEecCC-cccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHH
Confidence 432 22334444543 233446788888 56889999999999999998887777789999999999998854433
Q ss_pred HH
Q 003873 573 IN 574 (790)
Q Consensus 573 In 574 (790)
|.
T Consensus 219 l~ 220 (322)
T 1xwi_A 219 IS 220 (322)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 44
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.70 E-value=1.2e-16 Score=174.43 Aligned_cols=178 Identities=12% Similarity=0.101 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc----------------
Q 003873 361 NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ---------------- 424 (790)
Q Consensus 361 ~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~---------------- 424 (790)
++...+.|...+.. +..++++||+||+|+|||++|+.+|+.+.+.
T Consensus 7 ~~~~~~~l~~~i~~-------------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~ 67 (334)
T 1a5t_A 7 LRPDFEKLVASYQA-------------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQL 67 (334)
T ss_dssp GHHHHHHHHHHHHT-------------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHH
T ss_pred hHHHHHHHHHHHHc-------------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 55666666666654 1356889999999999999999999998653
Q ss_pred --------EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHH
Q 003873 425 --------AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLI 496 (790)
Q Consensus 425 --------iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll 496 (790)
++++++.+. -.....+.+++++....... ..+.++|+||||+|.|+....+.+..++
T Consensus 68 ~~~~~~~d~~~~~~~~~-----------~~~~~i~~ir~l~~~~~~~~----~~~~~kvviIdead~l~~~a~naLLk~l 132 (334)
T 1a5t_A 68 MQAGTHPDYYTLAPEKG-----------KNTLGVDAVREVTEKLNEHA----RLGGAKVVWVTDAALLTDAAANALLKTL 132 (334)
T ss_dssp HHHTCCTTEEEECCCTT-----------CSSBCHHHHHHHHHHTTSCC----TTSSCEEEEESCGGGBCHHHHHHHHHHH
T ss_pred HhcCCCCCEEEEecccc-----------CCCCCHHHHHHHHHHHhhcc----ccCCcEEEEECchhhcCHHHHHHHHHHh
Confidence 233322200 00122456777776654322 2356789999999999987666665555
Q ss_pred HHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 003873 497 ASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQL 576 (790)
Q Consensus 497 ~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~L 576 (790)
+. ....+.+|++|++ ....++++++||..+.|.+++.+++..+|..++ .++++++..|+..++||+|.+++.|
T Consensus 133 Ee-p~~~~~~Il~t~~-~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 133 EE-PPAETWFFLATRE-PERLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp TS-CCTTEEEEEEESC-GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred cC-CCCCeEEEEEeCC-hHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 42 1223456666765 456779999999999999999999999998765 6899999999999999999999998
Q ss_pred HHH
Q 003873 577 QYM 579 (790)
Q Consensus 577 q~~ 579 (790)
+..
T Consensus 206 ~~~ 208 (334)
T 1a5t_A 206 QGD 208 (334)
T ss_dssp SSH
T ss_pred ccc
Confidence 654
No 45
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.5e-16 Score=178.60 Aligned_cols=229 Identities=17% Similarity=0.224 Sum_probs=150.0
Q ss_pred hhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
+-+++--+.+|+||.|.+.++++|+..+.....+- .-... .+...++++|||||||||||++|+++|.+++++
T Consensus 170 ~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~p--e~f~~-----~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 170 MEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRA--DKFKD-----MGIRAPKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCS--HHHHH-----HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred cccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCH--HHHHh-----CCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 44455556689999999999999998876532210 00001 112467999999999999999999999999999
Q ss_pred EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-----------hhHHH
Q 003873 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-----------RGGIA 493 (790)
Q Consensus 425 iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-----------~~~l~ 493 (790)
++.+++++..+++ +| .....++.+|..+.. ..++||||||+|.+.... ...+.
T Consensus 243 f~~v~~s~l~~~~-------vG-ese~~ir~lF~~A~~--------~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~ 306 (434)
T 4b4t_M 243 FLKLAAPQLVQMY-------IG-EGAKLVRDAFALAKE--------KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTML 306 (434)
T ss_dssp EEEEEGGGGCSSC-------SS-HHHHHHHHHHHHHHH--------HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHH
T ss_pred EEEEehhhhhhcc-------cc-hHHHHHHHHHHHHHh--------cCCeEEeecchhhhhhccCCCCCCCchHHHHHHH
Confidence 9999998754432 22 223457777776653 346899999999875411 12344
Q ss_pred HHHHHhhc--CCCcEEEEecccchhhh-hhccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Q 003873 494 DLIASIKI--SKIPIICICNDRYSQKL-KSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567 (790)
Q Consensus 494 ~Ll~~i~~--s~~pII~I~nd~~~~~l-~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G 567 (790)
.|+..+.. +...||+|++++....+ +.|++ |+. .|.|..|+.++...+|+..+.+..+.- +-.++.|++.+.|
T Consensus 307 ~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-dvdl~~lA~~t~G 385 (434)
T 4b4t_M 307 ELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDD-DINWQELARSTDE 385 (434)
T ss_dssp HHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCS-CCCHHHHHHHCSS
T ss_pred HHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCC-cCCHHHHHHhCCC
Confidence 55655542 22223333222233344 55655 544 489999999999999998887654331 1126788887765
Q ss_pred ----CHHHHHHHHHHHHh--cCCCCCHHHHHHHHHh
Q 003873 568 ----DIRMAINQLQYMSL--SLSVIKYDDIRQRLLS 597 (790)
Q Consensus 568 ----DiR~aIn~Lq~~~~--~~~~it~~~v~~~~~~ 597 (790)
||+.+++..-+.+. ....|+.+++..++..
T Consensus 386 ~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~ 421 (434)
T 4b4t_M 386 FNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISE 421 (434)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 77777765444333 3566888877766543
No 46
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.69 E-value=3.8e-16 Score=171.11 Aligned_cols=229 Identities=17% Similarity=0.197 Sum_probs=157.8
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML- 421 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel- 421 (790)
-..|..+|.| ++++|++..++.|..||..+.. ......++|+||+||||||+++.+++.+
T Consensus 10 ~~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~----------------~~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 10 REYLLPDYIP---DELPHREDQIRKIASILAPLYR----------------EEKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp GGGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGG----------------TCCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred hhhCCCccCC---CCCCChHHHHHHHHHHHHHHHc----------------CCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467778888 7899999999999998876321 1245789999999999999999999998
Q ss_pred -----CCcEEEEeCCCCCCchh--hhhhcccC------CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc-
Q 003873 422 -----GFQAIEVNASDSRGKAD--AKISKGIG------GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG- 487 (790)
Q Consensus 422 -----g~~iiEinaSd~rsk~~--~~i~~~~g------~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~- 487 (790)
++.++++++........ ..+...++ +.....+.+.+..... ....+.||||||++.+...
T Consensus 71 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~------~~~~~~vlilDE~~~l~~~~ 144 (386)
T 2qby_A 71 KKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR------DYGSQVVIVLDEIDAFVKKY 144 (386)
T ss_dssp HHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH------TCCSCEEEEEETHHHHHHSS
T ss_pred HHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh------ccCCeEEEEEcChhhhhccC
Confidence 88999999754322110 11111111 1111222222222111 1234679999999998754
Q ss_pred chhHHHHHHHHh---hcCCCcEEEEecccc--hhhhhhccccc--cccccCCCCHHHHHHHHHHHHHHc--CCCCCHHHH
Q 003873 488 DRGGIADLIASI---KISKIPIICICNDRY--SQKLKSLVNYC--SDLRFRKPRKQEIAKRLMQIANAE--GLEVNEIAL 558 (790)
Q Consensus 488 ~~~~l~~Ll~~i---~~s~~pII~I~nd~~--~~~l~~L~sR~--~~I~F~~pt~~ei~~iL~~I~~~E--gi~i~~~~l 558 (790)
+...+..++..+ ...++.+|+++++.. ......+.+|+ ..+.|.+++.+++..+|...+... ...++++++
T Consensus 145 ~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~ 224 (386)
T 2qby_A 145 NDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVI 224 (386)
T ss_dssp CSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHH
T ss_pred cCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHH
Confidence 256677777666 345667777887542 22335667777 479999999999999999887643 367899999
Q ss_pred HHHHHHcc---CCHHHHHHHHHHHHh-----cCCCCCHHHHHHHHH
Q 003873 559 EELADRVN---GDIRMAINQLQYMSL-----SLSVIKYDDIRQRLL 596 (790)
Q Consensus 559 ~~Ia~~s~---GDiR~aIn~Lq~~~~-----~~~~it~~~v~~~~~ 596 (790)
+.|+..+. ||+|.++++|+.++. ....|+.+++..++.
T Consensus 225 ~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~ 270 (386)
T 2qby_A 225 KLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKE 270 (386)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 99999998 999999999876653 234688887776553
No 47
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.8e-16 Score=173.62 Aligned_cols=228 Identities=18% Similarity=0.211 Sum_probs=148.1
Q ss_pred hhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
+.+++--..+++||.|.+.+++.|+.++.....+- . .... .+...++++|||||||||||++|+++|.+++++
T Consensus 161 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p-~-~~~~-----~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 161 MGENEKPDVTYADVGGLDMQKQEIREAVELPLVQA-D-LYEQ-----IGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCH-H-HHHH-----HCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred ccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCH-H-HHHh-----CCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34444444589999999999999999887532210 0 0000 112467999999999999999999999999999
Q ss_pred EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc--------c---hhHHH
Q 003873 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG--------D---RGGIA 493 (790)
Q Consensus 425 iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~--------~---~~~l~ 493 (790)
++.+++++..++. +| .....++++|..+. ...++||||||+|.+... + ...+.
T Consensus 234 ~~~v~~~~l~~~~-------~G-e~e~~ir~lF~~A~--------~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~ 297 (428)
T 4b4t_K 234 FIRVNGSEFVHKY-------LG-EGPRMVRDVFRLAR--------ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILI 297 (428)
T ss_dssp EEEEEGGGTCCSS-------CS-HHHHHHHHHHHHHH--------HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHH
T ss_pred eEEEecchhhccc-------cc-hhHHHHHHHHHHHH--------HcCCCeeechhhhhhhccccCCCCCCChHHHHHHH
Confidence 9999998764432 22 22346788887765 245789999999977531 1 12355
Q ss_pred HHHHHhhc--CCCcEEEEecccchhhh-hhccc--ccc-ccccC-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc
Q 003873 494 DLIASIKI--SKIPIICICNDRYSQKL-KSLVN--YCS-DLRFR-KPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN 566 (790)
Q Consensus 494 ~Ll~~i~~--s~~pII~I~nd~~~~~l-~~L~s--R~~-~I~F~-~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~ 566 (790)
.|+..+.. ....|++|++++....+ +.|++ |+. .|.|. .|+..+...+|..++.+..+. ++..++.|+..+.
T Consensus 298 ~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~ 376 (428)
T 4b4t_K 298 ELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRND 376 (428)
T ss_dssp HHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTT
T ss_pred HHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCC
Confidence 56655542 22234333332234444 55554 554 47885 788999999998887654432 1223788888776
Q ss_pred C----CHHHHHHHHHHHHh--cCCCCCHHHHHHHHH
Q 003873 567 G----DIRMAINQLQYMSL--SLSVIKYDDIRQRLL 596 (790)
Q Consensus 567 G----DiR~aIn~Lq~~~~--~~~~it~~~v~~~~~ 596 (790)
| ||+.+++..-+.+. ....|+.+++.+++.
T Consensus 377 G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~ 412 (428)
T 4b4t_K 377 SLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYA 412 (428)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 5 77777665443333 345678877776554
No 48
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.68 E-value=3.9e-16 Score=176.87 Aligned_cols=200 Identities=16% Similarity=0.177 Sum_probs=136.8
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML- 421 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel- 421 (790)
...++.++.+.+|+||+|++.+++.|..++.. ...+.. ... .....++++||+||||||||++|+++|+++
T Consensus 121 ~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~-p~~~~~-~~~------~~~~~~~~vLL~GppGtGKT~lA~aia~~~~ 192 (444)
T 2zan_A 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVIL-PIKFPH-LFT------GKRTPWRGILLFGPPGTGKSYLAKAVATEAN 192 (444)
T ss_dssp ---CBCCCCCCCGGGSCSCHHHHHHHHHHHTH-HHHCTT-TTS------GGGCCCSEEEEECSTTSSHHHHHHHHHHHCC
T ss_pred hcceeccCCCCCHHHhcCHHHHHHHHHHHHHH-HhhCHH-Hhh------ccCCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 34677889999999999999999999988753 111000 000 011346899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--------hhHHH
Q 003873 422 GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--------RGGIA 493 (790)
Q Consensus 422 g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--------~~~l~ 493 (790)
+..++.+++++..+.. ++.. ...++.++..+. ...+.||||||||.|.... ...+.
T Consensus 193 ~~~~~~v~~~~l~~~~-------~g~~-~~~~~~~f~~a~--------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~ 256 (444)
T 2zan_A 193 NSTFFSISSSDLVSKW-------LGES-EKLVKNLFQLAR--------ENKPSIIFIDEIDSLCGSRSENESEAARRIKT 256 (444)
T ss_dssp SSEEEEECCC----------------C-CCTHHHHHHHHH--------HSCSEEEEESCTTTTCCCSSCCCCGGGHHHHH
T ss_pred CCCEEEEeHHHHHhhh-------cchH-HHHHHHHHHHHH--------HcCCeEEEEechHhhccCCCCccccHHHHHHH
Confidence 8899999988654321 2211 223556665543 2346799999999996421 12334
Q ss_pred HHHHHhhc-----CCCcEEEEecccchhhhhhcccccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Q 003873 494 DLIASIKI-----SKIPIICICNDRYSQKLKSLVNYCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG 567 (790)
Q Consensus 494 ~Ll~~i~~-----s~~pII~I~nd~~~~~l~~L~sR~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G 567 (790)
.++..+.. ..+.||+++|.. ..+.+.|++||. .+.|..|+.++...+|..++...+..+++..+..|+..+.|
T Consensus 257 ~lL~~l~~~~~~~~~v~vI~atn~~-~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G 335 (444)
T 2zan_A 257 EFLVQMQGVGVDNDGILVLGATNIP-WVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDG 335 (444)
T ss_dssp HHHTTTTCSSCCCSSCEEEEEESCG-GGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTT
T ss_pred HHHHHHhCcccCCCCEEEEecCCCc-cccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence 44444432 334455566643 334477888984 68899999999999999988877777899999999999988
No 49
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=2.1e-16 Score=170.48 Aligned_cols=169 Identities=9% Similarity=0.102 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh------CCcEEEEeCCCC
Q 003873 360 GNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML------GFQAIEVNASDS 433 (790)
Q Consensus 360 G~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel------g~~iiEinaSd~ 433 (790)
||+++++.|+..+.. +..+++||+||||+|||++|+++|+.+ ..+++++++++.
T Consensus 1 g~~~~~~~L~~~i~~--------------------~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~ 60 (305)
T 2gno_A 1 GAKDQLETLKRIIEK--------------------SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE 60 (305)
T ss_dssp ---CHHHHHHHHHHT--------------------CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS
T ss_pred ChHHHHHHHHHHHHC--------------------CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC
Confidence 688888999888876 125799999999999999999999975 347888887642
Q ss_pred CCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEeccc
Q 003873 434 RGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDR 513 (790)
Q Consensus 434 rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~ 513 (790)
.. ..+.+++++..+...+. .+.++|+||||+|.|+...++.|...++. ....+.+|++|++
T Consensus 61 ~~-------------~id~ir~li~~~~~~p~----~~~~kvviIdead~lt~~a~naLLk~LEe-p~~~t~fIl~t~~- 121 (305)
T 2gno_A 61 NI-------------GIDDIRTIKDFLNYSPE----LYTRKYVIVHDCERMTQQAANAFLKALEE-PPEYAVIVLNTRR- 121 (305)
T ss_dssp CB-------------CHHHHHHHHHHHTSCCS----SSSSEEEEETTGGGBCHHHHHHTHHHHHS-CCTTEEEEEEESC-
T ss_pred CC-------------CHHHHHHHHHHHhhccc----cCCceEEEeccHHHhCHHHHHHHHHHHhC-CCCCeEEEEEECC-
Confidence 11 13457777776653322 34578999999999998777777766662 1234456666665
Q ss_pred chhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 003873 514 YSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578 (790)
Q Consensus 514 ~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~ 578 (790)
....++++++| .++|.+++.+++..+|.+++ .++++++ ..+.||+|.++|+|+.
T Consensus 122 ~~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~-----~i~~~~~----~~~~g~~~~al~~l~~ 175 (305)
T 2gno_A 122 WHYLLPTIKSR--VFRVVVNVPKEFRDLVKEKI-----GDLWEEL----PLLERDFKTALEAYKL 175 (305)
T ss_dssp GGGSCHHHHTT--SEEEECCCCHHHHHHHHHHH-----TTHHHHC----GGGGTCHHHHHHHHHH
T ss_pred hHhChHHHHce--eEeCCCCCHHHHHHHHHHHh-----CCCHHHH----HHHCCCHHHHHHHHHH
Confidence 45677999999 99999999999999999988 3666655 4579999999999964
No 50
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.65 E-value=3.3e-16 Score=178.63 Aligned_cols=194 Identities=15% Similarity=0.220 Sum_probs=139.0
Q ss_pred CccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHH
Q 003873 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 341 ~~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.-...|+++|+|..+++|+|++..++.|..+|.. ....++||+||||||||++|+.+|+.
T Consensus 165 ~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r--------------------~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR--------------------RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC--------------------SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhc--------------------cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999999999999876 23468999999999999999999999
Q ss_pred h----------CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchh
Q 003873 421 L----------GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRG 490 (790)
Q Consensus 421 l----------g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~ 490 (790)
+ +..++.++++ +.. .+.....++.++..+. ...+.||||| . ...
T Consensus 225 l~~~~~p~~l~~~~~~~l~~~---~~~--------~g~~e~~~~~~~~~~~--------~~~~~iLfiD----~---~~~ 278 (468)
T 3pxg_A 225 IINNEVPEILRDKRVMTLDMG---TKY--------RGEFEDRLKKVMDEIR--------QAGNIILFID----A---AID 278 (468)
T ss_dssp HHSSCSCTTTSSCCEECC---------------------CTTHHHHHHHHH--------TCCCCEEEEC----C------
T ss_pred HHhCCCChhhcCCeEEEeeCC---ccc--------cchHHHHHHHHHHHHH--------hcCCeEEEEe----C---chh
Confidence 7 7778888876 111 0111134556665543 2345699999 1 222
Q ss_pred HHHHHHHHhhcCCCcEEEEecccc----hhhhhhccccccccccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHH
Q 003873 491 GIADLIASIKISKIPIICICNDRY----SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA----EGLEVNEIALEELA 562 (790)
Q Consensus 491 ~l~~Ll~~i~~s~~pII~I~nd~~----~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~----Egi~i~~~~l~~Ia 562 (790)
....|+..+....+.+|+++|... ..+.+.|++||..|.|.+|+.+++..+|..++.. .++.++++++..++
T Consensus 279 a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~ 358 (468)
T 3pxg_A 279 ASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAV 358 (468)
T ss_dssp -----CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHH
T ss_pred HHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 333344444556677777777542 2345789999999999999999999999988766 68889999999999
Q ss_pred HHccCCH------HHHHHHHHHHH
Q 003873 563 DRVNGDI------RMAINQLQYMS 580 (790)
Q Consensus 563 ~~s~GDi------R~aIn~Lq~~~ 580 (790)
..+.+.+ +.++++|...+
T Consensus 359 ~~s~~~~~~~~lp~~ai~ll~~a~ 382 (468)
T 3pxg_A 359 KLSDRYISDRFLPDKAIDLIDEAG 382 (468)
T ss_dssp HHHHHSSCCSCTTHHHHHHHHHHH
T ss_pred HHHHHHhccCcCCcHHHHHHHHHH
Confidence 8875544 46888887655
No 51
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.64 E-value=5.2e-16 Score=168.42 Aligned_cols=219 Identities=13% Similarity=0.160 Sum_probs=149.1
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
..|+++|+|..+.+++|++..++.+..++.. ..++||+||||||||++|+++|+.++.
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~----------------------~~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICT----------------------GGHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH----------------------TCCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHc----------------------CCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4799999999999999999999999888775 258999999999999999999999999
Q ss_pred cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh---
Q 003873 424 QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK--- 500 (790)
Q Consensus 424 ~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~--- 500 (790)
.++.++++......+ .+........ ..... .....-...||||||+|.+....++.+..+++...
T Consensus 73 ~~~~i~~~~~~~~~~-l~g~~~~~~~---------~~~~~--~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~ 140 (331)
T 2r44_A 73 DFHRIQFTPDLLPSD-LIGTMIYNQH---------KGNFE--VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTI 140 (331)
T ss_dssp CEEEEECCTTCCHHH-HHEEEEEETT---------TTEEE--EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE
T ss_pred CeEEEecCCCCChhh-cCCceeecCC---------CCceE--eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceee
Confidence 999988753221110 1110000000 00000 00001113699999999998877777777776421
Q ss_pred -------cCCCcEEEEecccc----hhhhhhcccccc-ccccCCCCHHHHHHHHHHHHHH--------------------
Q 003873 501 -------ISKIPIICICNDRY----SQKLKSLVNYCS-DLRFRKPRKQEIAKRLMQIANA-------------------- 548 (790)
Q Consensus 501 -------~s~~pII~I~nd~~----~~~l~~L~sR~~-~I~F~~pt~~ei~~iL~~I~~~-------------------- 548 (790)
.....||+++|... ....++|++||. .+.|.+|+.+++..+|...+..
T Consensus 141 ~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~ 220 (331)
T 2r44_A 141 GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRN 220 (331)
T ss_dssp TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHH
T ss_pred CCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHH
Confidence 11222333444211 114478899987 4999999999999999887654
Q ss_pred --cCCCCCHHHHHHHHHHc-----cC---------------CHHHHHHHHHHHHh-----cCCCCCHHHHHHHHH
Q 003873 549 --EGLEVNEIALEELADRV-----NG---------------DIRMAINQLQYMSL-----SLSVIKYDDIRQRLL 596 (790)
Q Consensus 549 --Egi~i~~~~l~~Ia~~s-----~G---------------DiR~aIn~Lq~~~~-----~~~~it~~~v~~~~~ 596 (790)
.++.+++++++.|+..+ .+ +.|.++++++.+.. +...++.+++.+++.
T Consensus 221 ~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~ 295 (331)
T 2r44_A 221 EINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAY 295 (331)
T ss_dssp HHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 26778999999988754 23 69999888865432 234577777766543
No 52
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.63 E-value=3.5e-16 Score=153.44 Aligned_cols=167 Identities=16% Similarity=0.236 Sum_probs=114.9
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML- 421 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel- 421 (790)
...|.++|+|.++++++|++..++.+..++.. ...+++||+||||||||++|+.+++.+
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~--------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 9 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR--------------------RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTS--------------------SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccccchHHHHHHHHHHhc--------------------CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999999888765 235789999999999999999999987
Q ss_pred ---------CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc----
Q 003873 422 ---------GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD---- 488 (790)
Q Consensus 422 ---------g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~---- 488 (790)
+..++.+++....... ...+.....+.+++..... ...+.||||||+|.+....
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-------~~~~~vl~iDe~~~l~~~~~~~~ 135 (195)
T 1jbk_A 69 NGEVPEGLKGRRVLALDMGALVAGA------KYRGEFEERLKGVLNDLAK-------QEGNVILFIDELHTMVGAGKADG 135 (195)
T ss_dssp HTCSCGGGTTCEEEEECHHHHHTTT------CSHHHHHHHHHHHHHHHHH-------STTTEEEEEETGGGGTT------
T ss_pred hCCCchhhcCCcEEEeeHHHHhccC------CccccHHHHHHHHHHHHhh-------cCCCeEEEEeCHHHHhccCcccc
Confidence 6777777764321000 0000011234444443221 2345799999999996421
Q ss_pred -hhHHHHHHHHhhcCCCcEEEEecccch----hhhhhccccccccccCCCCHHHHHHHH
Q 003873 489 -RGGIADLIASIKISKIPIICICNDRYS----QKLKSLVNYCSDLRFRKPRKQEIAKRL 542 (790)
Q Consensus 489 -~~~l~~Ll~~i~~s~~pII~I~nd~~~----~~l~~L~sR~~~I~F~~pt~~ei~~iL 542 (790)
......+...+...++.+|+++|.... ...+.+++||..+.|.+|+.+++..+|
T Consensus 136 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 136 AMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred hHHHHHHHHHhhccCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 122223334445667888888885431 234788899999999999999887654
No 53
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.62 E-value=8.2e-15 Score=166.72 Aligned_cols=224 Identities=18% Similarity=0.248 Sum_probs=145.0
Q ss_pred hhhh-cCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 346 WTEK-YRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 346 W~eK-Y~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
|.+. ....+|+||+|++..+++|++++..+..... ... .+...++++||+||||||||++|+++|.+++..
T Consensus 5 ~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~---~~~-----~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSK---FNR-----IGARMPKGILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHH---HHT-----TTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred eccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHH---Hhh-----cCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4444 4455899999999999999888765321100 000 112356789999999999999999999999999
Q ss_pred EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccch-----------hHHH
Q 003873 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR-----------GGIA 493 (790)
Q Consensus 425 iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~-----------~~l~ 493 (790)
++.+++++..... + +.....++.+|..+.. ..++||||||+|.+..... ..+.
T Consensus 77 f~~is~~~~~~~~-------~-g~~~~~~r~lf~~A~~--------~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~ 140 (476)
T 2ce7_A 77 FFHISGSDFVELF-------V-GVGAARVRDLFAQAKA--------HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLN 140 (476)
T ss_dssp EEEEEGGGTTTCC-------T-THHHHHHHHHHHHHHH--------TCSEEEEEETGGGTCCC---------CHHHHHHH
T ss_pred eeeCCHHHHHHHH-------h-cccHHHHHHHHHHHHh--------cCCCEEEEechhhhhhhcccccCcCcHHHHHHHH
Confidence 9999987653321 1 1123456666666542 3468999999999865321 2345
Q ss_pred HHHHHhh----cCCCcEEEEecccchhhh-hhccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 003873 494 DLIASIK----ISKIPIICICNDRYSQKL-KSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEI-ALEELADR 564 (790)
Q Consensus 494 ~Ll~~i~----~s~~pII~I~nd~~~~~l-~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~-~l~~Ia~~ 564 (790)
.|+..+. ...+.||+++|. ...+ +.+++ |+. .|.|..|+..+...+|+..+... .+.++ .+..|+..
T Consensus 141 ~LL~~ld~~~~~~~viVIaaTn~--~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~--~l~~~v~l~~la~~ 216 (476)
T 2ce7_A 141 QLLVEMDGFDSKEGIIVMAATNR--PDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK--PLAEDVNLEIIAKR 216 (476)
T ss_dssp HHHHHHHHSCGGGTEEEEEEESC--GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHT
T ss_pred HHHHHHhccCCCCCEEEEEecCC--hhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC--CCcchhhHHHHHHh
Confidence 5555443 223344445553 3344 34543 544 58899999999999988776544 33333 37789999
Q ss_pred ccCCH-HHHHHHHHHH---Hhc--CCCCCHHHHHHHHHh
Q 003873 565 VNGDI-RMAINQLQYM---SLS--LSVIKYDDIRQRLLS 597 (790)
Q Consensus 565 s~GDi-R~aIn~Lq~~---~~~--~~~it~~~v~~~~~~ 597 (790)
+.|.. |.+.++++.+ +.. ...|+.+++..++..
T Consensus 217 t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~ 255 (476)
T 2ce7_A 217 TPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDR 255 (476)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHH
Confidence 88866 5555555433 322 357888888776643
No 54
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.61 E-value=4e-15 Score=181.60 Aligned_cols=205 Identities=15% Similarity=0.209 Sum_probs=141.1
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML- 421 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel- 421 (790)
...|+++|+|.++++++|++..++.+..+|.. ...+++||+||||||||++|+.+|+.+
T Consensus 157 ~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~--------------------~~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 157 GIDLTRLAAEGKLDPVIGRDEEIRRVIQILLR--------------------RTKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHC--------------------SSCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHhHHHHHhcCCCcccCCcHHHHHHHHHHHhc--------------------CCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999999999988875 234679999999999999999999998
Q ss_pred ---------CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc----
Q 003873 422 ---------GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD---- 488 (790)
Q Consensus 422 ---------g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~---- 488 (790)
++.++.++++...... ...+.....+..++..... ...+.||||||+|.|....
T Consensus 217 ~~~~p~~l~~~~~~~l~~~~l~~g~------~~~g~~~~~l~~~~~~~~~-------~~~~~iL~IDEi~~l~~~~~~~g 283 (854)
T 1qvr_A 217 KGDVPEGLKGKRIVSLQMGSLLAGA------KYRGEFEERLKAVIQEVVQ-------SQGEVILFIDELHTVVGAGKAEG 283 (854)
T ss_dssp HTCSCTTSTTCEEEEECC-----------------CHHHHHHHHHHHHHT-------TCSSEEEEECCC-----------
T ss_pred cCCCchhhcCCeEEEeehHHhhccC------ccchHHHHHHHHHHHHHHh-------cCCCeEEEEecHHHHhccCCccc
Confidence 8889999886542110 0011122345555555431 2346799999999997421
Q ss_pred -hhHHHHHHHHhhcCCCcEEEEecccch---hhhhhccccccccccCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHH
Q 003873 489 -RGGIADLIASIKISKIPIICICNDRYS---QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN----AEGLEVNEIALEE 560 (790)
Q Consensus 489 -~~~l~~Ll~~i~~s~~pII~I~nd~~~---~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~----~Egi~i~~~~l~~ 560 (790)
......|...+....+.+|+++|.... ...+.|.+||..|.|.+|+.+++..+|..++. ..++.++++++..
T Consensus 284 ~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~ 363 (854)
T 1qvr_A 284 AVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIA 363 (854)
T ss_dssp --------HHHHHTTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHH
T ss_pred hHHHHHHHHHHHhCCCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHH
Confidence 222233444455667788888874322 23478999999999999999999999987765 3478899999999
Q ss_pred HHHHccCC------HHHHHHHHHHHH
Q 003873 561 LADRVNGD------IRMAINQLQYMS 580 (790)
Q Consensus 561 Ia~~s~GD------iR~aIn~Lq~~~ 580 (790)
+++.+.|. .+.++.++...+
T Consensus 364 ~~~ls~r~i~~~~lp~kai~lldea~ 389 (854)
T 1qvr_A 364 AATLSHRYITERRLPDKAIDLIDEAA 389 (854)
T ss_dssp HHHHHHHHCCSSCTHHHHHHHHHHHH
T ss_pred HHHHHhhhcccccChHHHHHHHHHHH
Confidence 99887442 677888776554
No 55
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.60 E-value=6e-15 Score=155.65 Aligned_cols=195 Identities=15% Similarity=0.204 Sum_probs=122.7
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG 435 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rs 435 (790)
..++|+...++.+..........+.. ......+++||+||||||||++|+++|+++++.++.+++++..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~----------~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~- 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKN----------SDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM- 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHH----------CSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGC-
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhc----------cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHh-
Confidence 35778777666666532211111100 0113468999999999999999999999999999999876421
Q ss_pred chhhhhhcccCCCc---hhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc------cchhHHHH-HHHHhhc---C
Q 003873 436 KADAKISKGIGGSN---ANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA------GDRGGIAD-LIASIKI---S 502 (790)
Q Consensus 436 k~~~~i~~~~g~s~---~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~------~~~~~l~~-Ll~~i~~---s 502 (790)
++... ...+..++..+. .....||||||+|.|.. ..+..+.. |...+.. .
T Consensus 102 ---------~g~~~~~~~~~~~~~~~~~~--------~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~ 164 (272)
T 1d2n_A 102 ---------IGFSETAKCQAMKKIFDDAY--------KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQ 164 (272)
T ss_dssp ---------TTCCHHHHHHHHHHHHHHHH--------TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCST
T ss_pred ---------cCCchHHHHHHHHHHHHHHH--------hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCC
Confidence 11110 123445554432 23467999999998832 22333333 3343332 3
Q ss_pred CCcEEEEecccchhhhhh--cccc-ccccccCCCCH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-----CHHHHH
Q 003873 503 KIPIICICNDRYSQKLKS--LVNY-CSDLRFRKPRK-QEIAKRLMQIANAEGLEVNEIALEELADRVNG-----DIRMAI 573 (790)
Q Consensus 503 ~~pII~I~nd~~~~~l~~--L~sR-~~~I~F~~pt~-~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G-----DiR~aI 573 (790)
...+++|++.+....+++ +.+| +..|.|++++. +++..++.. . ..++++.+..|++.+.| |+|+++
T Consensus 165 ~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~----~-~~~~~~~~~~l~~~~~g~~~~g~ir~l~ 239 (272)
T 1d2n_A 165 GRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL----L-GNFKDKERTTIAQQVKGKKVWIGIKKLL 239 (272)
T ss_dssp TCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH----H-TCSCHHHHHHHHHHHTTSEEEECHHHHH
T ss_pred CCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh----c-CCCCHHHHHHHHHHhcCCCccccHHHHH
Confidence 344444443333444543 5666 56788888877 566555543 2 25789999999999988 999999
Q ss_pred HHHHHHHhcC
Q 003873 574 NQLQYMSLSL 583 (790)
Q Consensus 574 n~Lq~~~~~~ 583 (790)
|+|+.+....
T Consensus 240 ~~l~~a~~~~ 249 (272)
T 1d2n_A 240 MLIEMSLQMD 249 (272)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHhhhc
Confidence 9999876543
No 56
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.60 E-value=3.7e-15 Score=160.11 Aligned_cols=201 Identities=19% Similarity=0.260 Sum_probs=129.4
Q ss_pred hcCCCCCccccCCHHHHHHHHHHHHhhh---hhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcE
Q 003873 349 KYRPKTPNEIVGNQQLVKQLHTWLAHWN---EKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA 425 (790)
Q Consensus 349 KY~P~sl~dLvG~e~~i~~L~~wL~~w~---~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~i 425 (790)
.+.+.+++||+|++.+++.|+.++..-. ..+... +....+++||+||||||||++|+++|++++..+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~----------~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~ 77 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF----------GMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 77 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH----------CCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHc----------CCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE
Confidence 4566789999999999999999887411 111100 113467999999999999999999999999999
Q ss_pred EEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-----------hhHHHH
Q 003873 426 IEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-----------RGGIAD 494 (790)
Q Consensus 426 iEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-----------~~~l~~ 494 (790)
+.+++++.. ...++.. ...+..++..+.. ..+.||||||+|.|.... ...+..
T Consensus 78 i~v~~~~l~-------~~~~g~~-~~~~~~~f~~a~~--------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~ 141 (301)
T 3cf0_A 78 ISIKGPELL-------TMWFGES-EANVREIFDKARQ--------AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQ 141 (301)
T ss_dssp EEECHHHHH-------HHHHTTC-TTHHHHHHHHHHH--------TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHH
T ss_pred EEEEhHHHH-------hhhcCch-HHHHHHHHHHHHh--------cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHH
Confidence 999876431 2222222 2346666666532 346799999999875421 123445
Q ss_pred HHHHhh----cCCCcEEEEecccchhhh-hhccc--cc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc
Q 003873 495 LIASIK----ISKIPIICICNDRYSQKL-KSLVN--YC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN 566 (790)
Q Consensus 495 Ll~~i~----~s~~pII~I~nd~~~~~l-~~L~s--R~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~ 566 (790)
++..+. ..++.||+++|. ...+ +.+++ |+ ..+.|..|+.++...+|...+...++. .+..+..|+..+.
T Consensus 142 lL~~l~~~~~~~~v~vi~atn~--~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~ 218 (301)
T 3cf0_A 142 ILTEMDGMSTKKNVFIIGATNR--PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTN 218 (301)
T ss_dssp HHHHHHSSCTTSSEEEEEEESC--GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCS
T ss_pred HHHHhhcccCCCCEEEEEecCC--ccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcC
Confidence 555443 223445555554 2334 45555 66 368999999999999999888766543 1222455666554
Q ss_pred C----CHHHHHHHHHH
Q 003873 567 G----DIRMAINQLQY 578 (790)
Q Consensus 567 G----DiR~aIn~Lq~ 578 (790)
| |++.+++...+
T Consensus 219 g~sg~dl~~l~~~a~~ 234 (301)
T 3cf0_A 219 GFSGADLTEICQRACK 234 (301)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3 55555444433
No 57
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.59 E-value=1.2e-14 Score=155.56 Aligned_cols=202 Identities=18% Similarity=0.199 Sum_probs=139.5
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
++++|+...++.|..++..+..... . ...+..++||+||||||||++|+++|+.+ +..++.++++.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~-----~------~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK-----D------PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS-----C------TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC-----C------CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence 4689999999999999988543210 0 01234589999999999999999999998 45688998875
Q ss_pred CCCchhhhhhcccC-------CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhc----
Q 003873 433 SRGKADAKISKGIG-------GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKI---- 501 (790)
Q Consensus 433 ~rsk~~~~i~~~~g-------~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~---- 501 (790)
..... .....+| ......+.+.+.. ....||||||+|.+....+..+..+++....
T Consensus 86 ~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~~~~-----------~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~ 152 (311)
T 4fcw_A 86 YMEKH--AVSRLIGAPPGYVGYEEGGQLTEAVRR-----------RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSH 152 (311)
T ss_dssp CCSTT--HHHHHHCCCTTSTTTTTCCHHHHHHHH-----------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTT
T ss_pred ccccc--cHHHhcCCCCccccccccchHHHHHHh-----------CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCC
Confidence 43321 0111111 1111223333322 2347999999999998777777777764321
Q ss_pred ------CCCcEEEEeccc-------------------------chhhhhhccccc-cccccCCCCHHHHHHHHHHHHHHc
Q 003873 502 ------SKIPIICICNDR-------------------------YSQKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAE 549 (790)
Q Consensus 502 ------s~~pII~I~nd~-------------------------~~~~l~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~E 549 (790)
.++.||+++|.. .....+.|++|| ..+.|.+|+.+++..++...+...
T Consensus 153 ~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~ 232 (311)
T 4fcw_A 153 GRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYL 232 (311)
T ss_dssp SCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHH
T ss_pred CCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 133377777761 112236788898 578899999999999988866542
Q ss_pred ---------CCCCCHHHHHHHHHHcc---CCHHHHHHHHHHHHh
Q 003873 550 ---------GLEVNEIALEELADRVN---GDIRMAINQLQYMSL 581 (790)
Q Consensus 550 ---------gi~i~~~~l~~Ia~~s~---GDiR~aIn~Lq~~~~ 581 (790)
.+.+++++++.|+..+. |++|.+.+.++.++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 233 RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp HHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred HHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 35689999999999764 999999999987653
No 58
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.58 E-value=1.8e-15 Score=148.35 Aligned_cols=159 Identities=16% Similarity=0.210 Sum_probs=108.6
Q ss_pred cchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-
Q 003873 343 SLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML- 421 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel- 421 (790)
...|.++|+|.++++++|++..++.+..++.. ...+++||+||||||||++|+.+++.+
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~--------------------~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 9 SRDLTALARAGKLDPVIGRDTEIRRAIQILSR--------------------RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTS--------------------SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhhcchHHHHHHHHHHhC--------------------CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999999999999888865 235789999999999999999999987
Q ss_pred ---------CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc-----c
Q 003873 422 ---------GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA-----G 487 (790)
Q Consensus 422 ---------g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~-----~ 487 (790)
+..++.++++..... ....+.....+..++..... ...+.||||||+|.+.. .
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-------~~~~~vl~iDe~~~l~~~~~~~~ 135 (187)
T 2p65_A 69 QGDVPDSLKGRKLVSLDLSSLIAG------AKYRGDFEERLKSILKEVQD-------AEGQVVMFIDEIHTVVGAGAVAE 135 (187)
T ss_dssp TTCSCTTTTTCEEEEECHHHHHHH------CCSHHHHHHHHHHHHHHHHH-------TTTSEEEEETTGGGGSSSSSSCT
T ss_pred hcCCcchhcCCeEEEEeHHHhhcC------CCchhHHHHHHHHHHHHHHh-------cCCceEEEEeCHHHhcccccccc
Confidence 677777765421000 00000001223344433221 23457999999999972 2
Q ss_pred -chhHHHHHHHHhhcCCCcEEEEecccch----hhhhhccccccccccCCCC
Q 003873 488 -DRGGIADLIASIKISKIPIICICNDRYS----QKLKSLVNYCSDLRFRKPR 534 (790)
Q Consensus 488 -~~~~l~~Ll~~i~~s~~pII~I~nd~~~----~~l~~L~sR~~~I~F~~pt 534 (790)
....+..+...+....+.||+++|.... ...+.+++||..+.|.+|+
T Consensus 136 ~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 136 GALDAGNILKPMLARGELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp TSCCTHHHHHHHHHTTCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred cchHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 1233334444555677888888885431 2447889999998888774
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.58 E-value=2.2e-14 Score=172.80 Aligned_cols=223 Identities=13% Similarity=0.163 Sum_probs=153.6
Q ss_pred CccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHH
Q 003873 341 QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 341 ~~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.-...|+++|+|..+++|+|++..++.+..+|.. ....++||+||||||||++|+.+|+.
T Consensus 171 ~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~--------------------~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 171 NFTTNLNQLARVGGIDPLIGREKELERAIQVLCR--------------------RRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTS--------------------SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhc--------------------cCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 3456799999999999999999999999888875 23578999999999999999999998
Q ss_pred h----------CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc---
Q 003873 421 L----------GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG--- 487 (790)
Q Consensus 421 l----------g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~--- 487 (790)
+ ++.++.++.+..... ....+.....++.++.... ...+.||||||+|.|...
T Consensus 231 l~~~~v~~~~~~~~~~~~~~~~l~~~------~~~~g~~e~~l~~~~~~~~--------~~~~~iL~IDEi~~l~~~~~~ 296 (758)
T 1r6b_X 231 IVQGDVPEVMADCTIYSLDIGSLLAG------TKYRGDFEKRFKALLKQLE--------QDTNSILFIDEIHTIIGAGAA 296 (758)
T ss_dssp HHHTCSCGGGTTCEEEECCCC---CC------CCCSSCHHHHHHHHHHHHS--------SSSCEEEEETTTTTTTTSCCS
T ss_pred HHhCCCChhhcCCEEEEEcHHHHhcc------ccccchHHHHHHHHHHHHH--------hcCCeEEEEechHHHhhcCCC
Confidence 7 566676665432110 0011112234555555432 234589999999999542
Q ss_pred ---chhHHHHHHHHhhcCCCcEEEEecccc----hhhhhhccccccccccCCCCHHHHHHHHHHHHHH----cCCCCCHH
Q 003873 488 ---DRGGIADLIASIKISKIPIICICNDRY----SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA----EGLEVNEI 556 (790)
Q Consensus 488 ---~~~~l~~Ll~~i~~s~~pII~I~nd~~----~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~----Egi~i~~~ 556 (790)
.......|...+....+.+|+++|... ....+.|.+||..+.|..|+.+++..+|..++.. .++.++++
T Consensus 297 ~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~ 376 (758)
T 1r6b_X 297 SGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK 376 (758)
T ss_dssp SSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred CcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 112222232334455666777776421 1223668899999999999999999999987765 67889999
Q ss_pred HHHHHHHHccC------CHHHHHHHHHHHHhc---------CCCCCHHHHHHHHHh
Q 003873 557 ALEELADRVNG------DIRMAINQLQYMSLS---------LSVIKYDDIRQRLLS 597 (790)
Q Consensus 557 ~l~~Ia~~s~G------DiR~aIn~Lq~~~~~---------~~~it~~~v~~~~~~ 597 (790)
++..++..+.| ....++.++..++.. ...++.+++...+..
T Consensus 377 al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~ 432 (758)
T 1r6b_X 377 AVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR 432 (758)
T ss_dssp HHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHH
Confidence 99999988754 234566666544421 346788888776543
No 60
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.57 E-value=1.1e-14 Score=161.05 Aligned_cols=214 Identities=16% Similarity=0.169 Sum_probs=132.3
Q ss_pred cccCCHHHHHHHHHHHHhhhhhhhcccc----------ccCC-CCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcE
Q 003873 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGT----------KRNG-KKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA 425 (790)
Q Consensus 357 dLvG~e~~i~~L~~wL~~w~~~~~~~~~----------k~~~-~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~i 425 (790)
.|+|++.+++.|..++..+...... +. ..+. ..........++||+||||||||++|+++|+.++..+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSF-KEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHh-hhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 5899999999999988643322110 00 0000 0000012357899999999999999999999999999
Q ss_pred EEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc--------------chhH
Q 003873 426 IEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG--------------DRGG 491 (790)
Q Consensus 426 iEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~--------------~~~~ 491 (790)
+.++++..... ...+......+..++........ ...+.||||||+|.|... .++.
T Consensus 101 ~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~----~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~ 170 (376)
T 1um8_A 101 AISDATSLTEA------GYVGEDVENILTRLLQASDWNVQ----KAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQA 170 (376)
T ss_dssp EEEEGGGCC--------------CTHHHHHHHHHTTTCHH----HHTTSEEEEETGGGC--------------CHHHHHH
T ss_pred EEecchhhhhc------CcCCccHHHHHHHHHhhccchhh----hcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHH
Confidence 99998754211 11122222334444433210000 123569999999999875 4455
Q ss_pred HHHHHHHh--------------------hcCCCcEEEEeccc--------------------------------------
Q 003873 492 IADLIASI--------------------KISKIPIICICNDR-------------------------------------- 513 (790)
Q Consensus 492 l~~Ll~~i--------------------~~s~~pII~I~nd~-------------------------------------- 513 (790)
|+.+++.. ..+++.+|+++|..
T Consensus 171 Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (376)
T 1um8_A 171 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHD 250 (376)
T ss_dssp HHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHH
T ss_pred HHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHH
Confidence 55555521 01334555555510
Q ss_pred --chhhhhhccccc-cccccCCCCHHHHHHHHHH----HHH----H-----cCCCCCHHHHHHHHHHcc---CCHHHHHH
Q 003873 514 --YSQKLKSLVNYC-SDLRFRKPRKQEIAKRLMQ----IAN----A-----EGLEVNEIALEELADRVN---GDIRMAIN 574 (790)
Q Consensus 514 --~~~~l~~L~sR~-~~I~F~~pt~~ei~~iL~~----I~~----~-----Egi~i~~~~l~~Ia~~s~---GDiR~aIn 574 (790)
.....+.|.+|+ ..+.|.+++.+++..++.. ++. . .++.+++++++.|++.+. |++|.+.+
T Consensus 251 l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~ 330 (376)
T 1um8_A 251 LVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRA 330 (376)
T ss_dssp HHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHH
T ss_pred HhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHH
Confidence 001236678888 6799999999999998862 221 1 245689999999999976 99999999
Q ss_pred HHHHHHh
Q 003873 575 QLQYMSL 581 (790)
Q Consensus 575 ~Lq~~~~ 581 (790)
.|+.++.
T Consensus 331 ~le~~~~ 337 (376)
T 1um8_A 331 IIEDFCL 337 (376)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987764
No 61
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.56 E-value=2.1e-16 Score=166.02 Aligned_cols=222 Identities=18% Similarity=0.256 Sum_probs=132.5
Q ss_pred hhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 348 EKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 348 eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
.++.+.+|++|+|++.+++.|..++..+..... ... .....++++||+||||||||++|+++|++++..++.
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~---~~~-----~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPER---YAN-----LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHH---HHH-----HSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHH---HHH-----CCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 356678899999999999888887764221100 000 011245679999999999999999999999999999
Q ss_pred EeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccch------------hHHHHH
Q 003873 428 VNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR------------GGIADL 495 (790)
Q Consensus 428 inaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~------------~~l~~L 495 (790)
+++++..... .+. ....+..++..+.. ..+.||||||+|.|..... ..+..+
T Consensus 75 v~~~~~~~~~-------~~~-~~~~~~~~~~~a~~--------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~l 138 (268)
T 2r62_A 75 MGGSSFIEMF-------VGL-GASRVRDLFETAKK--------QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQL 138 (268)
T ss_dssp CCSCTTTTSC-------SSS-CSSSSSTTHHHHHH--------SCSCEEEESCGGGTTC----------CCCSCSSTTTT
T ss_pred echHHHHHhh-------cch-HHHHHHHHHHHHHh--------cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHH
Confidence 9887653321 111 11122233333321 2346999999999875321 123344
Q ss_pred HHHhhc---CCCcEEEEecccchhhh-hhccc--cc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-
Q 003873 496 IASIKI---SKIPIICICNDRYSQKL-KSLVN--YC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG- 567 (790)
Q Consensus 496 l~~i~~---s~~pII~I~nd~~~~~l-~~L~s--R~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G- 567 (790)
+..+.. ...++++|++.+....+ +.+++ |+ ..+.|..|+.++...+|...+....+. ++..+..|+..+.|
T Consensus 139 l~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~ 217 (268)
T 2r62_A 139 LAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGL 217 (268)
T ss_dssp TTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSS
T ss_pred HHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCC
Confidence 443322 22334444333333334 45555 43 568999999999999998877543322 22235667776665
Q ss_pred ---CHHHHHHHHHHHHhc--CCCCCHHHHHHH
Q 003873 568 ---DIRMAINQLQYMSLS--LSVIKYDDIRQR 594 (790)
Q Consensus 568 ---DiR~aIn~Lq~~~~~--~~~it~~~v~~~ 594 (790)
|++.+++.+...+.. ...|+.+++..+
T Consensus 218 ~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a 249 (268)
T 2r62_A 218 AGADLANIINEAALLAGRNNQKEVRQQHLKEA 249 (268)
T ss_dssp CHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHHhccCCcCHHHHHHH
Confidence 555555544444432 346777776553
No 62
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.55 E-value=2.7e-14 Score=163.35 Aligned_cols=203 Identities=15% Similarity=0.271 Sum_probs=131.4
Q ss_pred hhhcCCCCCccccCCHHHHHHHHHHHHhhhhh--hhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 347 TEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK--FLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 347 ~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~--~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
.+.+.+.++++|+|++..++.|+.++...... .+.. .+...++++||+||||||||++|+++|++++..
T Consensus 195 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~---------~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~ 265 (489)
T 3hu3_A 195 EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKA---------IGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (489)
T ss_dssp HHHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHH---------HTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE
T ss_pred ccccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHh---------cCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 34677889999999999999999988753111 0000 011356789999999999999999999999999
Q ss_pred EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccch--------hHHHHHH
Q 003873 425 AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR--------GGIADLI 496 (790)
Q Consensus 425 iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~--------~~l~~Ll 496 (790)
++.+|+++..+. +.+.....++.+|..+.. ..+.+|||||+|.|..... ..+..|+
T Consensus 266 fv~vn~~~l~~~--------~~g~~~~~~~~~f~~A~~--------~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL 329 (489)
T 3hu3_A 266 FFLINGPEIMSK--------LAGESESNLRKAFEEAEK--------NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL 329 (489)
T ss_dssp EEEEEHHHHHTS--------CTTHHHHHHHHHHHHHHH--------TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHH
T ss_pred EEEEEchHhhhh--------hcchhHHHHHHHHHHHHh--------cCCcEEEecchhhhccccccccchHHHHHHHHHH
Confidence 999998653222 112223446666666532 3457999999998876321 2233344
Q ss_pred HHhh---c-CCCcEEEEecccchhhhhhccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCH
Q 003873 497 ASIK---I-SKIPIICICNDRYSQKLKSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDI 569 (790)
Q Consensus 497 ~~i~---~-s~~pII~I~nd~~~~~l~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDi 569 (790)
..+. . ..+.||+++|.. ..+.+.+++ |+. .+.|..|+.++...+|...+....+. .+..+..|+..+.|..
T Consensus 330 ~~ld~~~~~~~v~vIaaTn~~-~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s 407 (489)
T 3hu3_A 330 TLMDGLKQRAHVIVMAATNRP-NSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHV 407 (489)
T ss_dssp HHHHHSCTTSCEEEEEEESCG-GGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCC
T ss_pred HHhhccccCCceEEEEecCCc-cccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCc
Confidence 3333 2 223344445532 223355655 443 48899999999999999877554433 2234678888887754
Q ss_pred HHHHHHH
Q 003873 570 RMAINQL 576 (790)
Q Consensus 570 R~aIn~L 576 (790)
...|..|
T Consensus 408 ~~dL~~L 414 (489)
T 3hu3_A 408 GADLAAL 414 (489)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 63
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.55 E-value=2.7e-14 Score=155.27 Aligned_cols=229 Identities=14% Similarity=0.113 Sum_probs=131.9
Q ss_pred hhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 348 EKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 348 eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
..-+|.+|++|+|++..++.+...+.. ....++||+||||||||++|+++++.++.....
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~--------------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~ 75 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVD--------------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAV 75 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHC--------------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEE
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhC--------------------CCCceEEEECCCCccHHHHHHHHHHhCcccccc
Confidence 334678899999999876654433321 123469999999999999999999998632111
Q ss_pred ----EeCCCCCCchh--h-----------hhhcccCCCchhH------HHHHHHHhhhhccc-cCCCCCceEEEEecCCC
Q 003873 428 ----VNASDSRGKAD--A-----------KISKGIGGSNANS------IKELVSNEALSANM-DRSKHPKTVLIMDEVDG 483 (790)
Q Consensus 428 ----inaSd~rsk~~--~-----------~i~~~~g~s~~~~------i~e~l~~a~~~~~~-~~~~~~~~VLIIDEiD~ 483 (790)
+++........ . .+.....+..... +...+......... ........||||||+|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~ 155 (350)
T 1g8p_A 76 EGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNL 155 (350)
T ss_dssp TTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGG
T ss_pred ccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhh
Confidence 12211000000 0 0000000000000 11122221110000 00011257999999999
Q ss_pred CCccchhHHHHHHHHhh------------cCCCcEEEEecccchhhhhhccccccc-cccCCCC-HHHHHHHHHHH----
Q 003873 484 MSAGDRGGIADLIASIK------------ISKIPIICICNDRYSQKLKSLVNYCSD-LRFRKPR-KQEIAKRLMQI---- 545 (790)
Q Consensus 484 L~~~~~~~l~~Ll~~i~------------~s~~pII~I~nd~~~~~l~~L~sR~~~-I~F~~pt-~~ei~~iL~~I---- 545 (790)
+....+..+..+++.-. ...+.||+++|.......++|++||.. +.|.+|+ .++...++..+
T Consensus 156 l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~ 235 (350)
T 1g8p_A 156 LEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYD 235 (350)
T ss_dssp SCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcc
Confidence 99877777777776411 113344555664233455789999976 8999995 44443555431
Q ss_pred -------------------------HHHcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHhc-----CCCCCHHHH
Q 003873 546 -------------------------ANAEGLEVNEIALEELADRVNG----DIRMAINQLQYMSLS-----LSVIKYDDI 591 (790)
Q Consensus 546 -------------------------~~~Egi~i~~~~l~~Ia~~s~G----DiR~aIn~Lq~~~~~-----~~~it~~~v 591 (790)
+...++.+++++++.|+..+.+ ++|.++++|+.+... ...|+.+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v 315 (350)
T 1g8p_A 236 ADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHL 315 (350)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHH
T ss_pred cCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHH
Confidence 2234678999999999998866 899999999755322 345788877
Q ss_pred HHHHH
Q 003873 592 RQRLL 596 (790)
Q Consensus 592 ~~~~~ 596 (790)
..++.
T Consensus 316 ~~a~~ 320 (350)
T 1g8p_A 316 KRVAT 320 (350)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 64
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.55 E-value=4.1e-14 Score=154.42 Aligned_cols=193 Identities=17% Similarity=0.205 Sum_probs=145.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCc---EEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQ---AIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRS 469 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~---iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~ 469 (790)
..+++||+||+|.||++++..+++.+ +++ +++++.. ..+++++..+...+.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------------~~~~~l~~~~~~~pl---- 73 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-------------------TDWNAIFSLCQAMSL---- 73 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-------------------CCHHHHHHHHHHHHH----
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-------------------CCHHHHHHHhcCcCC----
Confidence 46899999999999999999998876 332 2333211 124444444332221
Q ss_pred CCCceEEEEecCCC-CCccchhHHHHHHHHhhcCCCcEEEEeccc-----chhhhhhccccccccccCCCCHHHHHHHHH
Q 003873 470 KHPKTVLIMDEVDG-MSAGDRGGIADLIASIKISKIPIICICNDR-----YSQKLKSLVNYCSDLRFRKPRKQEIAKRLM 543 (790)
Q Consensus 470 ~~~~~VLIIDEiD~-L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~-----~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~ 543 (790)
.+.++||||||++. |.....+.+..+++.. ...+.+|+++++. ....++++.+||..+.|.+++..++..+|.
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p-~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLL-HDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTC-BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcC-CCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 24578999999999 8876666666665531 2345566666542 234568899999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHhccCCCCCChHHHHHHHhc
Q 003873 544 QIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLS--LSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFG 615 (790)
Q Consensus 544 ~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~--~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~ 615 (790)
.++..+|+.+++++++.|++.++||+|.+++.|+.++.. ...|+.++|.+.+..... .++|+.+..++.
T Consensus 153 ~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~---~~if~l~~ai~~ 223 (343)
T 1jr3_D 153 ARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAH---FTPFHWVDALLM 223 (343)
T ss_dssp HHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCC---CCHHHHHHHHTT
T ss_pred HHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhc---CCHHHHHHHHHC
Confidence 999999999999999999999999999999999887763 467999999887655433 368888888864
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.54 E-value=2e-14 Score=150.89 Aligned_cols=203 Identities=15% Similarity=0.187 Sum_probs=127.9
Q ss_pred CCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC---CcEEEEeC
Q 003873 354 TPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG---FQAIEVNA 430 (790)
Q Consensus 354 sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg---~~iiEina 430 (790)
+|++++|+...+..+...+..+. ....++||+||||||||++|+++++.+. ..++.+|+
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~------------------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~ 65 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA------------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT------------------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred ccccceeCCHHHHHHHHHHHHHh------------------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEec
Confidence 68899999999999988887632 1246899999999999999999999874 67999998
Q ss_pred CCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh----------
Q 003873 431 SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK---------- 500 (790)
Q Consensus 431 Sd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~---------- 500 (790)
+..... .+...+.+.....+...... ..... ......+|||||++.+....+..+..+++...
T Consensus 66 ~~~~~~---~~~~~l~g~~~~~~~g~~~~---~~~~l-~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~ 138 (265)
T 2bjv_A 66 AALNEN---LLDSELFGHEAGAFTGAQKR---HPGRF-ERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPL 138 (265)
T ss_dssp GGSCHH---HHHHHHHCCC---------C---CCCHH-HHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CE
T ss_pred CCCChh---HHHHHhcCCccccccccccc---ccchh-hhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccc
Confidence 865221 11111100000000000000 00000 00124699999999999877777777776421
Q ss_pred cCCCcEEEEecccchhh------hhhcccccc--ccccCCCCH--HHHHHH----HHHHHHHcCC----CCCHHHHHHHH
Q 003873 501 ISKIPIICICNDRYSQK------LKSLVNYCS--DLRFRKPRK--QEIAKR----LMQIANAEGL----EVNEIALEELA 562 (790)
Q Consensus 501 ~s~~pII~I~nd~~~~~------l~~L~sR~~--~I~F~~pt~--~ei~~i----L~~I~~~Egi----~i~~~~l~~Ia 562 (790)
...+.||+++|...... .+.|.+|+. .+.++++.. +++..+ |...+...+. .+++++++.|.
T Consensus 139 ~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~ 218 (265)
T 2bjv_A 139 QVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLL 218 (265)
T ss_dssp ECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHH
T ss_pred cCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHH
Confidence 24567888888654332 256778874 466777764 455544 3444555555 68999999998
Q ss_pred HHc-cCCHHHHHHHHHHHHh
Q 003873 563 DRV-NGDIRMAINQLQYMSL 581 (790)
Q Consensus 563 ~~s-~GDiR~aIn~Lq~~~~ 581 (790)
... .||+|++.+.|+.++.
T Consensus 219 ~~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 219 NYRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp HSCCTTHHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHH
Confidence 775 8999999999987654
No 66
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.54 E-value=6.2e-14 Score=160.36 Aligned_cols=227 Identities=20% Similarity=0.256 Sum_probs=144.7
Q ss_pred chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
.+|.+. .+.+|+||+|++..+.+|++.+..+..... . ...+...++++||+||||||||++|++||.+++.
T Consensus 20 ~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~---~-----~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~ 90 (499)
T 2dhr_A 20 RVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSR---F-----HEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV 90 (499)
T ss_dssp EEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGG---T-----TTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC
T ss_pred eeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhh---h-----hhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 455555 778999999999999999887765322100 0 0111234678999999999999999999999999
Q ss_pred cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-----------hhHH
Q 003873 424 QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-----------RGGI 492 (790)
Q Consensus 424 ~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-----------~~~l 492 (790)
.++.+++++..... . +.....+..++..+. ...++||||||||.+.... ...+
T Consensus 91 ~~i~i~g~~~~~~~-------~-g~~~~~v~~lfq~a~--------~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l 154 (499)
T 2dhr_A 91 PFITASGSDFVEMF-------V-GVGAARVRDLFETAK--------RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL 154 (499)
T ss_dssp CEEEEEGGGGTSSC-------T-THHHHHHHHHTTTSS--------SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH
T ss_pred CEEEEehhHHHHhh-------h-hhHHHHHHHHHHHHH--------hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH
Confidence 99999987643221 1 111122334333321 2345799999999886421 1234
Q ss_pred HHHHHHhhc--CCCcEEEEecccchhhh-hhcccc--c-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHc
Q 003873 493 ADLIASIKI--SKIPIICICNDRYSQKL-KSLVNY--C-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIA-LEELADRV 565 (790)
Q Consensus 493 ~~Ll~~i~~--s~~pII~I~nd~~~~~l-~~L~sR--~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~-l~~Ia~~s 565 (790)
..++..+.. ....+|+++..+....+ +.++++ + ..|.|..|+..+...+|+..+ .++.+++++ +..|+..+
T Consensus 155 ~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~--~~~~l~~dv~l~~lA~~t 232 (499)
T 2dhr_A 155 NQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA--RGKPLAEDVDLALLAKRT 232 (499)
T ss_dssp HHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT--SSSCCCCSSTTHHHHTTS
T ss_pred HHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH--hcCCCChHHHHHHHHHhc
Confidence 555555442 22334444333333445 456653 3 358899999999999887655 345555443 78899999
Q ss_pred cCCH-HHHHHHHHHHHh---c--CCCCCHHHHHHHHHh
Q 003873 566 NGDI-RMAINQLQYMSL---S--LSVIKYDDIRQRLLS 597 (790)
Q Consensus 566 ~GDi-R~aIn~Lq~~~~---~--~~~it~~~v~~~~~~ 597 (790)
.|+. |.+-++++.++. . ...|+.+++..++..
T Consensus 233 ~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~ 270 (499)
T 2dhr_A 233 PGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADR 270 (499)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 8876 666666654432 2 346888888877654
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.54 E-value=1.9e-14 Score=173.37 Aligned_cols=193 Identities=15% Similarity=0.212 Sum_probs=137.4
Q ss_pred ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
-...|+++|+|..+++|+|++..++.|..+|.. ....++||+||||||||++|+++|+.+
T Consensus 166 ~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~--------------------~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 166 LARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR--------------------RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC--------------------SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCccCchHHHHHHHHHHhC--------------------CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999999999876 235689999999999999999999997
Q ss_pred ----------CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhH
Q 003873 422 ----------GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGG 491 (790)
Q Consensus 422 ----------g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~ 491 (790)
++.++.+++.. +. .+.....++.++..+. ...+.||||| . ....
T Consensus 226 ~~~~~p~~l~~~~~~~~~~g~---~~--------~G~~e~~l~~~~~~~~--------~~~~~iLfiD----~---~~~~ 279 (758)
T 3pxi_A 226 INNEVPEILRDKRVMTLDMGT---KY--------RGEFEDRLKKVMDEIR--------QAGNIILFID----A---AIDA 279 (758)
T ss_dssp HSSCSCTTTSSCCEECC---------------------CTTHHHHHHHHH--------TCCCCEEEEC----C-------
T ss_pred hcCCCChhhcCCeEEEecccc---cc--------cchHHHHHHHHHHHHH--------hcCCEEEEEc----C---chhH
Confidence 77888877611 00 0111234666666543 2345799999 1 1122
Q ss_pred HHHHHHHhhcCCCcEEEEecccc----hhhhhhccccccccccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 003873 492 IADLIASIKISKIPIICICNDRY----SQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA----EGLEVNEIALEELAD 563 (790)
Q Consensus 492 l~~Ll~~i~~s~~pII~I~nd~~----~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~----Egi~i~~~~l~~Ia~ 563 (790)
...|+..+....+.+|+++|... ..+.+.|++||..|.|..|+.+++..+|..++.. .++.++++++..++.
T Consensus 280 ~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~ 359 (758)
T 3pxi_A 280 SNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVK 359 (758)
T ss_dssp ----CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 23344444556677777777543 1344788999999999999999999999987765 678899999999998
Q ss_pred HccCC------HHHHHHHHHHHH
Q 003873 564 RVNGD------IRMAINQLQYMS 580 (790)
Q Consensus 564 ~s~GD------iR~aIn~Lq~~~ 580 (790)
.+.+. .+.++.+|..++
T Consensus 360 ~s~~~i~~~~~p~~ai~ll~~a~ 382 (758)
T 3pxi_A 360 LSDRYISDRFLPDKAIDLIDEAG 382 (758)
T ss_dssp HHHHSSCCSCTTHHHHHHHHHHH
T ss_pred HhhcccccCcCCcHHHHHHHHHH
Confidence 77443 367777776554
No 68
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=99.53 E-value=6.6e-16 Score=180.25 Aligned_cols=76 Identities=32% Similarity=0.552 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHh
Q 003873 202 PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIR 278 (790)
Q Consensus 202 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~ 278 (790)
++||.|++|||||+|+.|+|++++++|+++||+|++|||+||||||+|+++| +|++||++|||+||+|++|++||.
T Consensus 595 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~g-sKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 595 DSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAG-SKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CCcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEEECCCCC-hHHHHHHHCCCcEEcHHHHHHHhc
Confidence 5689999999999999999999999999999999999999999999999988 999999999999999999999984
No 69
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.53 E-value=9.4e-15 Score=160.90 Aligned_cols=210 Identities=19% Similarity=0.273 Sum_probs=133.3
Q ss_pred cccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCc
Q 003873 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436 (790)
Q Consensus 357 dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk 436 (790)
.|+|++.+++.|..++..+......... . ........++||+||||||||++|+++|+.++.+++.+++++....
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~-~----~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~ 90 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDT-S----NGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA 90 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSC-S----SSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTC
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccc-c----ccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccc
Confidence 3799999999999999654332211100 0 0111246789999999999999999999999999999998753211
Q ss_pred hhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc--------------chhHHHHHHH-----
Q 003873 437 ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG--------------DRGGIADLIA----- 497 (790)
Q Consensus 437 ~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~--------------~~~~l~~Ll~----- 497 (790)
. .+|......+..++........ ...+.||||||+|.+... .++.|+.+++
T Consensus 91 ~------~~g~~~~~~~~~~~~~~~~~~~----~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~ 160 (363)
T 3hws_A 91 G------YVGEDVENIIQKLLQKCDYDVQ----KAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAA 160 (363)
T ss_dssp H------HHHHHHTHHHHHHHHHTTTCHH----HHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC---
T ss_pred c------cccccHHHHHHHHHHHhhhhHH----hcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceee
Confidence 0 1111112334444444311000 123469999999988865 3455555555
Q ss_pred ---------------HhhcCCCcEEEEeccc-chh-------------------------------------------hh
Q 003873 498 ---------------SIKISKIPIICICNDR-YSQ-------------------------------------------KL 518 (790)
Q Consensus 498 ---------------~i~~s~~pII~I~nd~-~~~-------------------------------------------~l 518 (790)
.+-.+++.+||++|.. ... ..
T Consensus 161 ~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~ 240 (363)
T 3hws_A 161 VPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLI 240 (363)
T ss_dssp -------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCC
T ss_pred ccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCC
Confidence 1122445566666631 000 23
Q ss_pred hhcccccccc-ccCCCCHHHHHHHHHH----HHH-------HcC--CCCCHHHHHHHHHHc---cCCHHHHHHHHHHHHh
Q 003873 519 KSLVNYCSDL-RFRKPRKQEIAKRLMQ----IAN-------AEG--LEVNEIALEELADRV---NGDIRMAINQLQYMSL 581 (790)
Q Consensus 519 ~~L~sR~~~I-~F~~pt~~ei~~iL~~----I~~-------~Eg--i~i~~~~l~~Ia~~s---~GDiR~aIn~Lq~~~~ 581 (790)
+.|++|+..+ .|.+++.+++..++.. ++. ..+ +.+++++++.|+..+ .+++|.+-|.++.+..
T Consensus 241 ~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~ 320 (363)
T 3hws_A 241 PEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALL 320 (363)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred HHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHH
Confidence 5677887764 4999999998887765 322 123 458999999999753 6778888888877653
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.52 E-value=2.2e-13 Score=142.11 Aligned_cols=221 Identities=19% Similarity=0.259 Sum_probs=133.4
Q ss_pred hhhcCCCCCccccCCHHHHHHHHHHHHhhhhh-hhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcE
Q 003873 347 TEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEK-FLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQA 425 (790)
Q Consensus 347 ~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~-~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~i 425 (790)
+..+.+.+|++|+|.+..+.++++....+... .+.. ..-..+++++|+|||||||||+++++|..++..+
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~---------~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~ 77 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHE---------MGARIPKGVLLVGPPGVGKTHLARAVAGEARVPF 77 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHH---------TTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHH---------cCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 45566779999999999988888766543211 0100 0112356799999999999999999999999888
Q ss_pred EEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-----------hhHHHH
Q 003873 426 IEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-----------RGGIAD 494 (790)
Q Consensus 426 iEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-----------~~~l~~ 494 (790)
+.++..+... ... +.....+..++..+. ...+.+++|||+|.+.... ...+..
T Consensus 78 i~~~~~~~~~-------~~~-~~~~~~i~~~~~~~~--------~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ 141 (254)
T 1ixz_A 78 ITASGSDFVE-------MFV-GVGAARVRDLFETAK--------RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ 141 (254)
T ss_dssp EEEEHHHHHH-------SCT-THHHHHHHHHHHHHT--------TSSSEEEEEETHHHHHC---------CHHHHHHHHH
T ss_pred EEeeHHHHHH-------HHh-hHHHHHHHHHHHHHH--------hcCCeEEEehhhhhhhcccCccccccchHHHHHHHH
Confidence 8887653211 000 111223444554432 1235799999998764311 123344
Q ss_pred HHHHhhc--CCCcEEEEecccchhhh-hhccc--cc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHccC
Q 003873 495 LIASIKI--SKIPIICICNDRYSQKL-KSLVN--YC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIA-LEELADRVNG 567 (790)
Q Consensus 495 Ll~~i~~--s~~pII~I~nd~~~~~l-~~L~s--R~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~-l~~Ia~~s~G 567 (790)
++..+.. ....+|+++.......+ +.+++ |+ ..+.|..|+.++...+|+..+ .++.+++++ +..|+..+.|
T Consensus 142 ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~--~~~~~~~~~~~~~la~~~~G 219 (254)
T 1ixz_A 142 LLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA--RGKPLAEDVDLALLAKRTPG 219 (254)
T ss_dssp HHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH--TTSCBCTTCCHHHHHHTCTT
T ss_pred HHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH--cCCCCCcccCHHHHHHHcCC
Confidence 5544432 22333443322233344 55655 33 358899999999999998765 345555443 7889999988
Q ss_pred CH-HHHHHHHHHHH---hc--CCCCCHHHHHHH
Q 003873 568 DI-RMAINQLQYMS---LS--LSVIKYDDIRQR 594 (790)
Q Consensus 568 Di-R~aIn~Lq~~~---~~--~~~it~~~v~~~ 594 (790)
.. |.+.++++.++ .. ...|+.+++.++
T Consensus 220 ~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a 252 (254)
T 1ixz_A 220 FVGADLENLLNEAALLAAREGRRKITMKDLEEA 252 (254)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 54 55555554332 22 345777777654
No 71
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.51 E-value=2.8e-14 Score=170.84 Aligned_cols=196 Identities=17% Similarity=0.270 Sum_probs=127.7
Q ss_pred CCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCC
Q 003873 353 KTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432 (790)
Q Consensus 353 ~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd 432 (790)
.+|+||.|.+.++++|++++..-..+ . .-.. ..+...++++|||||||||||++|+++|+++|.+++++++++
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~-p-~~f~-----~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~ 273 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRH-P-ALFK-----AIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 273 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHC-C-GGGT-----SCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHH
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccC-H-HHHh-----hcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHH
Confidence 47899999999999999887641110 0 0011 112246899999999999999999999999999999999875
Q ss_pred CCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--------hhHHHHHHHHhh----
Q 003873 433 SRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--------RGGIADLIASIK---- 500 (790)
Q Consensus 433 ~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--------~~~l~~Ll~~i~---- 500 (790)
..++ +. +.....++++|..+. ...++||||||+|.+.... +..+..|+..+.
T Consensus 274 l~sk-------~~-gese~~lr~lF~~A~--------~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~ 337 (806)
T 3cf2_A 274 IMSK-------LA-GESESNLRKAFEEAE--------KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp HHSS-------CT-THHHHHHHHHHHHHT--------TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG
T ss_pred hhcc-------cc-hHHHHHHHHHHHHHH--------HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc
Confidence 4332 22 222345777777764 3567899999999997521 122334443332
Q ss_pred cCCCcEEEEecccchhhh-hhccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC----CHHHH
Q 003873 501 ISKIPIICICNDRYSQKL-KSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNG----DIRMA 572 (790)
Q Consensus 501 ~s~~pII~I~nd~~~~~l-~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~G----DiR~a 572 (790)
...+.||++||. ...+ +.|++ |+. .|.|..|+..+...+|+..+....+. ++..+..|+..+.| |+..+
T Consensus 338 ~~~V~VIaaTN~--~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~L 414 (806)
T 3cf2_A 338 RAHVIVMAATNR--PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAAL 414 (806)
T ss_dssp GGCEEEEEECSS--TTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHH
T ss_pred cCCEEEEEecCC--hhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCHHHHHHH
Confidence 233344445553 3344 45554 443 58899999999999998665432221 22337788888765 55554
Q ss_pred HH
Q 003873 573 IN 574 (790)
Q Consensus 573 In 574 (790)
++
T Consensus 415 v~ 416 (806)
T 3cf2_A 415 CS 416 (806)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 72
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=99.49 E-value=2e-15 Score=176.13 Aligned_cols=76 Identities=43% Similarity=0.718 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhh
Q 003873 202 PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA 279 (790)
Q Consensus 202 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~ 279 (790)
++||.|++|||||+|+. +|++++++|+++||+|++|||+||||||+|+++| +|++||++|||+||+|++|++||..
T Consensus 585 ~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~g-sKl~KA~~lgI~Ii~E~~f~~~l~~ 660 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSR-PREEVKALLGRLGAKVTDSVSRKTSYLVVGENPG-SKLEKARALGVAVLTEEEFWRFLKE 660 (667)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCC-CHHHHHHHHHHcCCEEcCcccCCeeEEEECCCCC-hHHHHHHHCCCeEEeHHHHHHHHhc
Confidence 56899999999999988 9999999999999999999999999999999988 9999999999999999999999975
No 73
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.48 E-value=2e-13 Score=158.36 Aligned_cols=202 Identities=18% Similarity=0.235 Sum_probs=127.4
Q ss_pred CccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCC
Q 003873 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434 (790)
Q Consensus 355 l~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~r 434 (790)
.++++|.+.+.+.+..++....... .....++||+|||||||||+|+++|..++..++.++++...
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~--------------~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTK--------------SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSS--------------SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcc--------------cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 4669999999999887766422110 01356899999999999999999999999999999887643
Q ss_pred Cchhh--hhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccch----hHHHHHHHHhhc-------
Q 003873 435 GKADA--KISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR----GGIADLIASIKI------- 501 (790)
Q Consensus 435 sk~~~--~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~----~~l~~Ll~~i~~------- 501 (790)
..... .....++. ....+...+..+ .....||||||+|.+....+ ..++.+++....
T Consensus 146 ~~~~~~g~~~~~ig~-~~~~~~~~~~~a---------~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~ 215 (543)
T 3m6a_A 146 DESEIRGHRRTYVGA-MPGRIIQGMKKA---------GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHY 215 (543)
T ss_dssp -------------------CHHHHHHTT---------CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSS
T ss_pred hhhhhhhHHHHHhcc-CchHHHHHHHHh---------hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeeccc
Confidence 21100 00011111 111222333322 12335999999999987533 333333321110
Q ss_pred -------CCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHH
Q 003873 502 -------SKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIAN-----AE-----GLEVNEIALEELADR 564 (790)
Q Consensus 502 -------s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~-----~E-----gi~i~~~~l~~Ia~~ 564 (790)
.++.||+++|. .....++|++||..|.|.+|+.+++..++...+. .. .+.++++++..|+..
T Consensus 216 ~~~~~~~~~v~iI~ttN~-~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~ 294 (543)
T 3m6a_A 216 IEETFDLSKVLFIATANN-LATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRY 294 (543)
T ss_dssp SCCCCBCSSCEEEEECSS-TTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHH
T ss_pred CCeeecccceEEEeccCc-cccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHh
Confidence 23345555554 3445578999999999999999999998887652 22 456789999999886
Q ss_pred cc--CCHHHHHHHHHHHHh
Q 003873 565 VN--GDIRMAINQLQYMSL 581 (790)
Q Consensus 565 s~--GDiR~aIn~Lq~~~~ 581 (790)
+. |++|.+-+.++.++.
T Consensus 295 ~~~~~~vR~L~~~i~~~~~ 313 (543)
T 3m6a_A 295 YTREAGVRSLERQLAAICR 313 (543)
T ss_dssp HCCCSSSHHHHHHHHHHHH
T ss_pred CChhhchhHHHHHHHHHHH
Confidence 64 788888888776653
No 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.46 E-value=5.4e-13 Score=160.77 Aligned_cols=202 Identities=16% Similarity=0.212 Sum_probs=140.8
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG 435 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rs 435 (790)
.+++|++..++.|..++..... |...+ ..+..++||+||||||||++|+++|+.++..++.++++....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~-----g~~~~------~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~ 526 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARA-----GLGHE------HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME 526 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHT-----TCSCT------TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSS
T ss_pred hhccCHHHHHHHHHHHHHHHhc-----ccCCC------CCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcc
Confidence 4689999999999998886422 11111 123458999999999999999999999999999999886543
Q ss_pred chhhhhhcccCCCc-------hhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhc-------
Q 003873 436 KADAKISKGIGGSN-------ANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKI------- 501 (790)
Q Consensus 436 k~~~~i~~~~g~s~-------~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~------- 501 (790)
.. .+...+|... ...+.+.+.. ..+.|||||||+.+....++.|..+++.-..
T Consensus 527 ~~--~~~~l~g~~~g~~g~~~~~~l~~~~~~-----------~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~ 593 (758)
T 1r6b_X 527 RH--TVSRLIGAPPGYVGFDQGGLLTDAVIK-----------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRK 593 (758)
T ss_dssp SS--CCSSSCCCCSCSHHHHHTTHHHHHHHH-----------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEE
T ss_pred hh--hHhhhcCCCCCCcCccccchHHHHHHh-----------CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCE
Confidence 21 1112222111 0112222222 3467999999999988777777777764221
Q ss_pred ---CCCcEEEEecccch------------------------hhhhhccccc-cccccCCCCHHHHHHHHHHHHHHc----
Q 003873 502 ---SKIPIICICNDRYS------------------------QKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAE---- 549 (790)
Q Consensus 502 ---s~~pII~I~nd~~~------------------------~~l~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~E---- 549 (790)
.++.||+++|.... ...++|++|+ ..|.|.+++.+++..++...+.+.
T Consensus 594 ~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~ 673 (758)
T 1r6b_X 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQL 673 (758)
T ss_dssp EECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 23446777774210 2236788998 679999999999999998877532
Q ss_pred -----CCCCCHHHHHHHHHHc---cCCHHHHHHHHHHHHh
Q 003873 550 -----GLEVNEIALEELADRV---NGDIRMAINQLQYMSL 581 (790)
Q Consensus 550 -----gi~i~~~~l~~Ia~~s---~GDiR~aIn~Lq~~~~ 581 (790)
.+.+++++++.|++.+ ++++|.+.+.|+..+.
T Consensus 674 ~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 674 DQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp HHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred HHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 3568999999999877 5568999988887653
No 75
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.46 E-value=1.1e-12 Score=138.80 Aligned_cols=216 Identities=20% Similarity=0.261 Sum_probs=132.4
Q ss_pred cCCCCCccccCCHHHHHHHHHHHHhhhhh-hhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 350 YRPKTPNEIVGNQQLVKQLHTWLAHWNEK-FLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 350 Y~P~sl~dLvG~e~~i~~L~~wL~~w~~~-~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
..+.++++|+|++..+.+|++....+... .+.. ..-..+++++|+|||||||||++++++..++..++.+
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~---------~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHE---------MGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHH---------TTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHH---------cCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 36678999999999988888766643211 0100 0112346699999999999999999999999888888
Q ss_pred eCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc-----------chhHHHHHHH
Q 003873 429 NASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-----------DRGGIADLIA 497 (790)
Q Consensus 429 naSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~-----------~~~~l~~Ll~ 497 (790)
++.+.... ..+.....+..++..+. ...+.++||||+|.+... ....+..++.
T Consensus 105 ~~~~~~~~--------~~~~~~~~i~~~~~~~~--------~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~ 168 (278)
T 1iy2_A 105 SGSDFVEM--------FVGVGAARVRDLFETAK--------RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 168 (278)
T ss_dssp EHHHHHHS--------TTTHHHHHHHHHHHHHH--------TSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHH
T ss_pred cHHHHHHH--------HhhHHHHHHHHHHHHHH--------hcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHH
Confidence 76532110 00111223445555432 123579999999876421 1223444554
Q ss_pred HhhcC--CCcEEE--Eecccchhhh-hhccc--cc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHccCC
Q 003873 498 SIKIS--KIPIIC--ICNDRYSQKL-KSLVN--YC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIA-LEELADRVNGD 568 (790)
Q Consensus 498 ~i~~s--~~pII~--I~nd~~~~~l-~~L~s--R~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~-l~~Ia~~s~GD 568 (790)
.+... ...+|+ ++|. ...+ +.+++ |+ ..+.|..|+.++...+|...+. ++.+++++ +..|+..+.|+
T Consensus 169 ~lsgg~~~~~~i~~a~t~~--p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~ 244 (278)
T 1iy2_A 169 EMDGFEKDTAIVVMAATNR--PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGF 244 (278)
T ss_dssp HHTTCCTTCCEEEEEEESC--TTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTC
T ss_pred HHhCCCCCCCEEEEEecCC--chhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCHHHHHHHcCCC
Confidence 44321 223333 3443 3334 45554 33 3588999999999999987663 45555443 78899999886
Q ss_pred H-HHHHHHHHHHH---hc--CCCCCHHHHHHH
Q 003873 569 I-RMAINQLQYMS---LS--LSVIKYDDIRQR 594 (790)
Q Consensus 569 i-R~aIn~Lq~~~---~~--~~~it~~~v~~~ 594 (790)
. |.+.++++.++ .. ...|+.+++.++
T Consensus 245 ~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a 276 (278)
T 1iy2_A 245 VGADLENLLNEAALLAAREGRRKITMKDLEEA 276 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 6 45555554433 22 346777777654
No 76
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.45 E-value=2e-12 Score=143.41 Aligned_cols=228 Identities=19% Similarity=0.192 Sum_probs=141.1
Q ss_pred hhhhhcCCCCCccccCCHHHHHHHHHHH-HhhhhhhhccccccCCCCcCccCCCcEEEE--ECCCCCChHHHHHHHHHHh
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWL-AHWNEKFLDTGTKRNGKKQNDASAEKAAIL--SGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~L~~wL-~~w~~~~~~~~~k~~~~~~~~~~~~~~lLL--sGPpGtGKTTlA~~lAkel 421 (790)
.+...|.| .+++|++..++.|..+| ..+... .......++| +||+|+|||++++.+++.+
T Consensus 14 ~~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~--------------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 14 VFDENYIP---PELRVRRGEAEALARIYLNRLLSG--------------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp GGSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTS--------------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHhHHHhcC--------------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 44456777 67999999999999999 763210 0013568999 9999999999999999877
Q ss_pred ---------CCcEEEEeCCCCCCchh--hhhhcccCC------CchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCC
Q 003873 422 ---------GFQAIEVNASDSRGKAD--AKISKGIGG------SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGM 484 (790)
Q Consensus 422 ---------g~~iiEinaSd~rsk~~--~~i~~~~g~------s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L 484 (790)
++.++++++....+... ..+...++. .....+...+..... ....+.||||||+|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~------~~~~~~llvlDe~~~l 150 (412)
T 1w5s_A 77 SEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLY------VENHYLLVILDEFQSM 150 (412)
T ss_dssp HHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHH------HHTCEEEEEEESTHHH
T ss_pred HHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH------hcCCeEEEEEeCHHHH
Confidence 56788888753322211 111111111 111121111111110 0234679999999998
Q ss_pred Ccc---chhHHHHHHHHhhc-------CCCcEEEEecccc-hhhh----hhcccc-ccccccCCCCHHHHHHHHHHHHHH
Q 003873 485 SAG---DRGGIADLIASIKI-------SKIPIICICNDRY-SQKL----KSLVNY-CSDLRFRKPRKQEIAKRLMQIANA 548 (790)
Q Consensus 485 ~~~---~~~~l~~Ll~~i~~-------s~~pII~I~nd~~-~~~l----~~L~sR-~~~I~F~~pt~~ei~~iL~~I~~~ 548 (790)
... ....+..++..+.. .++.||+++++.. ...+ +.+.++ +..+.|.+++.+++..+|...+..
T Consensus 151 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~ 230 (412)
T 1w5s_A 151 LSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAEL 230 (412)
T ss_dssp HSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHh
Confidence 653 34555555544432 3344666665322 1111 223233 223999999999999999887654
Q ss_pred cC--CCCCHHHHHHHHHHcc------CCHHHHHHHHHHHHh-----cCCCCCHHHHHHHH
Q 003873 549 EG--LEVNEIALEELADRVN------GDIRMAINQLQYMSL-----SLSVIKYDDIRQRL 595 (790)
Q Consensus 549 Eg--i~i~~~~l~~Ia~~s~------GDiR~aIn~Lq~~~~-----~~~~it~~~v~~~~ 595 (790)
.+ ..++++++..|++.+. |++|.++++++.+.. ....++.+.+...+
T Consensus 231 ~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~ 290 (412)
T 1w5s_A 231 GLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAV 290 (412)
T ss_dssp HBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 33 3588999999999999 999999998875432 12346666655443
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.44 E-value=1e-12 Score=141.51 Aligned_cols=195 Identities=13% Similarity=0.183 Sum_probs=131.5
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
++|+|+...++.+...+...- ....++||+||||||||++|+++++.. +..++.+||+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a------------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA------------------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC------------------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred CCcEECCHHHHHHHHHHHHHh------------------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 468999999999988888731 234689999999999999999999976 56789999886
Q ss_pred CCCchhhhhhcccCCCch----h---HHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh-----
Q 003873 433 SRGKADAKISKGIGGSNA----N---SIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK----- 500 (790)
Q Consensus 433 ~rsk~~~~i~~~~g~s~~----~---~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~----- 500 (790)
.... .++..+.+... . .....+.. ....+||||||+.|....+..+..+++...
T Consensus 64 ~~~~---l~~~~lfg~~~g~~tg~~~~~~g~~~~-----------a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g 129 (304)
T 1ojl_A 64 LNES---LLESELFGHEKGAFTGADKRREGRFVE-----------ADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVG 129 (304)
T ss_dssp CCHH---HHHHHHTCCCSSCCC---CCCCCHHHH-----------HTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTT
T ss_pred CChH---HHHHHhcCccccccCchhhhhcCHHHh-----------cCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecC
Confidence 5321 11111111000 0 00011111 123589999999999877777777776432
Q ss_pred -----cCCCcEEEEecccchhhh------hhccccccc--cccCCCC--HHHHHHHHHHH----HHHcC---CCCCHHHH
Q 003873 501 -----ISKIPIICICNDRYSQKL------KSLVNYCSD--LRFRKPR--KQEIAKRLMQI----ANAEG---LEVNEIAL 558 (790)
Q Consensus 501 -----~s~~pII~I~nd~~~~~l------~~L~sR~~~--I~F~~pt--~~ei~~iL~~I----~~~Eg---i~i~~~~l 558 (790)
...+.||+++|......+ +.|..|+.. |.++++. .+++..++... +...+ ..++++++
T Consensus 130 ~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~ 209 (304)
T 1ojl_A 130 SNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAM 209 (304)
T ss_dssp BCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHH
T ss_pred CcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHH
Confidence 234678888887644433 356677644 5577776 45665555543 33333 56899999
Q ss_pred HHHHHHc-cCCHHHHHHHHHHHHhc
Q 003873 559 EELADRV-NGDIRMAINQLQYMSLS 582 (790)
Q Consensus 559 ~~Ia~~s-~GDiR~aIn~Lq~~~~~ 582 (790)
+.|...+ .||+|.+.|.++.++..
T Consensus 210 ~~L~~~~wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 210 DLLIHYDWPGNIRELENAIERAVVL 234 (304)
T ss_dssp HHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 9999988 89999999999877653
No 78
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.44 E-value=5.2e-13 Score=160.92 Aligned_cols=193 Identities=15% Similarity=0.209 Sum_probs=135.4
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
.+++|++..++.|..++..+.... .. ...+..++||+||||||||++|+++|+.+ +..++.+|++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~-----~~------~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL-----KD------PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC-----SC------TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHccc-----CC------CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechh
Confidence 569999999999999998743211 00 01223479999999999999999999998 67899999986
Q ss_pred CCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh----------cC
Q 003873 433 SRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK----------IS 502 (790)
Q Consensus 433 ~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~----------~s 502 (790)
........ ...+.+.+.. ..+.|||||||+.+....++.|..+++.-. ..
T Consensus 560 ~~~~~~~~---------~~~l~~~~~~-----------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~ 619 (758)
T 3pxi_A 560 YMEKHSTS---------GGQLTEKVRR-----------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFR 619 (758)
T ss_dssp GCSSCCCC------------CHHHHHH-----------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCT
T ss_pred cccccccc---------cchhhHHHHh-----------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccC
Confidence 54432100 1112222222 235699999999998887888888777522 23
Q ss_pred CCcEEEEecccch-----------hhhhhccccc-cccccCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHH
Q 003873 503 KIPIICICNDRYS-----------QKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAE---------GLEVNEIALEEL 561 (790)
Q Consensus 503 ~~pII~I~nd~~~-----------~~l~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~E---------gi~i~~~~l~~I 561 (790)
++.||+++|.... ...+.|++|+ ..|.|.+++.+++..++...+... .+.+++++++.|
T Consensus 620 ~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l 699 (758)
T 3pxi_A 620 NTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKV 699 (758)
T ss_dssp TCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHH
T ss_pred CeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHH
Confidence 4567777773211 1236788998 789999999999999988776542 356899999999
Q ss_pred HHHc---cCCHHHHHHHHHHH
Q 003873 562 ADRV---NGDIRMAINQLQYM 579 (790)
Q Consensus 562 a~~s---~GDiR~aIn~Lq~~ 579 (790)
++.+ .|++|.+-+.++..
T Consensus 700 ~~~~~~~~~~~R~L~~~i~~~ 720 (758)
T 3pxi_A 700 AEEGVDLEYGARPLRRAIQKH 720 (758)
T ss_dssp HGGGCCTTTTTTTHHHHHHHH
T ss_pred HHhCCCCCCCChHHHHHHHHH
Confidence 9863 67888888888754
No 79
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.41 E-value=2e-13 Score=163.49 Aligned_cols=204 Identities=16% Similarity=0.234 Sum_probs=122.4
Q ss_pred CCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCC
Q 003873 353 KTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432 (790)
Q Consensus 353 ~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd 432 (790)
.++++|.|.+.+++.|++.+.. ...+.. ... ..+...++.+|||||||||||++|+++|.+++.+++.++.++
T Consensus 474 v~w~diggl~~~k~~l~e~v~~-p~~~p~-~f~-----~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~ 546 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQY-PVEHPD-KFL-----KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTT-TTTCSG-GGS-----SSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHh-hhhCHH-HHH-----hcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccch
Confidence 4678999999999998877753 211100 000 112246789999999999999999999999999999988764
Q ss_pred CCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-----------hhHHHHHHHHhh-
Q 003873 433 SRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-----------RGGIADLIASIK- 500 (790)
Q Consensus 433 ~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-----------~~~l~~Ll~~i~- 500 (790)
.+..++|.+ ...++++|..+. ...++||||||+|.+.... ...+..|+..+.
T Consensus 547 -------l~s~~vGes-e~~vr~lF~~Ar--------~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg 610 (806)
T 3cf2_A 547 -------LLTMWFGES-EANVREIFDKAR--------QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 610 (806)
T ss_dssp -------HHTTTCSSC-HHHHHHHHHHHH--------TTCSEEEECSCGGGCC--------------CHHHHHHHHHHHS
T ss_pred -------hhccccchH-HHHHHHHHHHHH--------HcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhC
Confidence 344445444 456888998875 3567899999999986421 123555665554
Q ss_pred -cCCCcEEEEecccchhhh-hhccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----cCCHHH
Q 003873 501 -ISKIPIICICNDRYSQKL-KSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV----NGDIRM 571 (790)
Q Consensus 501 -~s~~pII~I~nd~~~~~l-~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s----~GDiR~ 571 (790)
.....|++|++++....+ +.|++ |+. .|.|..|+.++..++|+..+.+..+. ++-.++.|++.+ +.||..
T Consensus 611 ~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~ 689 (806)
T 3cf2_A 611 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTE 689 (806)
T ss_dssp SCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHH
T ss_pred CCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHH
Confidence 233456666554455555 45554 544 48899999999998887766443332 122356666654 558887
Q ss_pred HHHHHHHHH
Q 003873 572 AINQLQYMS 580 (790)
Q Consensus 572 aIn~Lq~~~ 580 (790)
+++...+.+
T Consensus 690 l~~~A~~~a 698 (806)
T 3cf2_A 690 ICQRACKLA 698 (806)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776554444
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.39 E-value=1.4e-12 Score=159.04 Aligned_cols=201 Identities=19% Similarity=0.218 Sum_probs=136.2
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
++|+|++..++.|...+..+.... .. ...+..++||+||||||||++|++|++.+ +..++.+|++.
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~-----~~------~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGL-----KD------PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 626 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGC-----SC------SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred cccCCcHHHHHHHHHHHHHHhccc-----CC------CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 568999999999999998743211 00 01233589999999999999999999999 78899999987
Q ss_pred CCCchhhhhhcccC-------CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhc----
Q 003873 433 SRGKADAKISKGIG-------GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKI---- 501 (790)
Q Consensus 433 ~rsk~~~~i~~~~g-------~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~---- 501 (790)
..... .....+| ......+.+.+.. ..+.|||||||+.+....++.|..+++.-..
T Consensus 627 ~~~~~--~~s~l~g~~~~~~G~~~~g~l~~~~~~-----------~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~ 693 (854)
T 1qvr_A 627 YMEKH--AVSRLIGAPPGYVGYEEGGQLTEAVRR-----------RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSH 693 (854)
T ss_dssp CCSSG--GGGGC--------------CHHHHHHH-----------CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSS
T ss_pred ccchh--HHHHHcCCCCCCcCccccchHHHHHHh-----------CCCeEEEEecccccCHHHHHHHHHHhccCceECCC
Confidence 65432 1111111 1111122222221 2357999999999987766666666653211
Q ss_pred ------CCCcEEEEeccc----------------ch---------hhhhhccccc-cccccCCCCHHHHHHHHHHHHHHc
Q 003873 502 ------SKIPIICICNDR----------------YS---------QKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAE 549 (790)
Q Consensus 502 ------s~~pII~I~nd~----------------~~---------~~l~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~E 549 (790)
.++.||+++|.. .. ..-+.|++|+ ..+.|.+++.+++..++...+...
T Consensus 694 g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~ 773 (854)
T 1qvr_A 694 GRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYL 773 (854)
T ss_dssp SCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred CCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHH
Confidence 123366677741 01 0125577888 678999999999999888766521
Q ss_pred ---------CCCCCHHHHHHHHHHcc---CCHHHHHHHHHHHH
Q 003873 550 ---------GLEVNEIALEELADRVN---GDIRMAINQLQYMS 580 (790)
Q Consensus 550 ---------gi~i~~~~l~~Ia~~s~---GDiR~aIn~Lq~~~ 580 (790)
.+.+++++++.|+..+. |++|.+.+.++...
T Consensus 774 ~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~ 816 (854)
T 1qvr_A 774 RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQREL 816 (854)
T ss_dssp HHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHT
T ss_pred HHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHH
Confidence 34689999999999875 99999999998764
No 81
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.38 E-value=6.8e-12 Score=134.25 Aligned_cols=160 Identities=19% Similarity=0.232 Sum_probs=98.2
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCce
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~ 474 (790)
..++++||+||||||||++|+++|++++.+++.+++++..+. .+ +.....+.+.+..+..... ...+.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~-------~~-g~~~~~i~~~f~~a~~~~~----~~~~~ 101 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESG-------NA-GEPAKLIRQRYREAAEIIR----KGNMC 101 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC-----------HHHHHHHHHHHHHHHHHT----TSSCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhc-------cC-chhHHHHHHHHHHHHHHHh----cCCCe
Confidence 456899999999999999999999999999999998753222 11 1223345566655421111 34567
Q ss_pred EEEEecCCCCCccch----------hHHHHHHHHh---------------hcCCCcEEEEecccchhhhhhccc--cccc
Q 003873 475 VLIMDEVDGMSAGDR----------GGIADLIASI---------------KISKIPIICICNDRYSQKLKSLVN--YCSD 527 (790)
Q Consensus 475 VLIIDEiD~L~~~~~----------~~l~~Ll~~i---------------~~s~~pII~I~nd~~~~~l~~L~s--R~~~ 527 (790)
||||||||.+..... .....|++.+ ...++.||+++|.. ..+.++|++ |+..
T Consensus 102 vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~-~~ld~al~R~~R~d~ 180 (293)
T 3t15_A 102 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDF-STLYAPLIRDGRMEK 180 (293)
T ss_dssp CEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSC-CC--CHHHHHHHEEE
T ss_pred EEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCc-ccCCHHHhCCCCCce
Confidence 999999999876211 1223444443 23456777778753 233345553 5544
Q ss_pred cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc-CCHH
Q 003873 528 LRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVN-GDIR 570 (790)
Q Consensus 528 I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~-GDiR 570 (790)
+.+ .|+.++...++..++...+ ++.+.+..++.... .|+.
T Consensus 181 ~i~-~P~~~~r~~Il~~~~~~~~--~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 181 FYW-APTREDRIGVCTGIFRTDN--VPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp EEE-CCCHHHHHHHHHHHHGGGC--CCHHHHHHHHHHSCSCCHH
T ss_pred eEe-CcCHHHHHHHHHHhccCCC--CCHHHHHHHhCCCCcccHH
Confidence 333 4699999999998876554 45666776666654 4554
No 82
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.38 E-value=2.8e-12 Score=144.25 Aligned_cols=72 Identities=21% Similarity=0.359 Sum_probs=54.4
Q ss_pred ccccCCHHHHHHHHHHHHh-hhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAH-WNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSR 434 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~-w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~r 434 (790)
++|+|++++++.|..++.+ |.+.....+. .....++++||+||||||||++|+++|+.+++.++.++++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~-------~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~ 87 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPL-------RHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 87 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTT-------TTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhcccccc-------ccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhc
Confidence 4689999999999988865 4332111110 1112457899999999999999999999999999999986543
No 83
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.35 E-value=1.4e-11 Score=130.71 Aligned_cols=200 Identities=16% Similarity=0.217 Sum_probs=115.7
Q ss_pred CCCCccccCCHHHHHHHHHHHHhhhhh--hhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 352 PKTPNEIVGNQQLVKQLHTWLAHWNEK--FLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 352 P~sl~dLvG~e~~i~~L~~wL~~w~~~--~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
..+++||.|.+++++.|+.++...... .+.. ..-..+++++|+|||||||||+++++|.+++..++.++
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~---------~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~ 76 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKA---------LGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVK 76 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHH---------TTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHH---------cCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEE
Confidence 457899999999999988766431111 1110 01134567999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--------hhHHHHHHHHhh-
Q 003873 430 ASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--------RGGIADLIASIK- 500 (790)
Q Consensus 430 aSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--------~~~l~~Ll~~i~- 500 (790)
..+..+..... ....+..++..+.. ..+.++|+||+|.+.... ...+..++..+.
T Consensus 77 g~~l~~~~~~~--------~~~~i~~vf~~a~~--------~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsg 140 (274)
T 2x8a_A 77 GPELLNMYVGE--------SERAVRQVFQRAKN--------SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDG 140 (274)
T ss_dssp TTTTCSSTTHH--------HHHHHHHHHHHHHH--------TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHT
T ss_pred cHHHHhhhhhH--------HHHHHHHHHHHHHh--------cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhc
Confidence 87654332111 11235555555321 235799999999875421 122344444443
Q ss_pred --cCCCcEEE-Eecccchhhh-hhccc--ccc-ccccCCCCHHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHH------c
Q 003873 501 --ISKIPIIC-ICNDRYSQKL-KSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAE-GLEVN-EIALEELADR------V 565 (790)
Q Consensus 501 --~s~~pII~-I~nd~~~~~l-~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~E-gi~i~-~~~l~~Ia~~------s 565 (790)
..+..|++ ++| ....+ +++++ |+. .|.|..|+.++...+|+.++... ...+. +-.+..|+.. +
T Consensus 141 g~~~~~~i~ia~tn--~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~s 218 (274)
T 2x8a_A 141 LEARQQVFIMAATN--RPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYT 218 (274)
T ss_dssp CCSTTCEEEEEEES--CGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCC
T ss_pred ccccCCEEEEeecC--ChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcC
Confidence 22222332 344 33445 44543 443 47899999999999998876432 22222 2235666653 3
Q ss_pred cCCHHHHHHHHHH
Q 003873 566 NGDIRMAINQLQY 578 (790)
Q Consensus 566 ~GDiR~aIn~Lq~ 578 (790)
+.||..+++..-+
T Consensus 219 gadl~~l~~~a~~ 231 (274)
T 2x8a_A 219 GADLSALVREASI 231 (274)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4477665554433
No 84
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.32 E-value=4.4e-12 Score=148.99 Aligned_cols=230 Identities=14% Similarity=0.157 Sum_probs=142.5
Q ss_pred hhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 345 TWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 345 lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
....+|+|+++++++|++.+++.|...+.. ..+++|+|||||||||+|+++|..+...
T Consensus 30 ~~~~~~rp~~l~~i~G~~~~l~~l~~~i~~----------------------g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 30 TEEIEVPEKLIDQVIGQEHAVEVIKTAANQ----------------------KRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp GGGSCCCSSHHHHCCSCHHHHHHHHHHHHT----------------------TCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cCcccccccccceEECchhhHhhccccccC----------------------CCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 346799999999999999999998888775 3689999999999999999999988532
Q ss_pred ---EEEEeCCCCC--Cchhhhhhcc------------------------------------------cCC----CchhHH
Q 003873 425 ---AIEVNASDSR--GKADAKISKG------------------------------------------IGG----SNANSI 453 (790)
Q Consensus 425 ---iiEinaSd~r--sk~~~~i~~~------------------------------------------~g~----s~~~~i 453 (790)
.+.+...... ......+..+ .+. ......
T Consensus 88 ~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~ 167 (604)
T 3k1j_A 88 TLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHA 167 (604)
T ss_dssp SCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCH
T ss_pred cCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCH
Confidence 2223221111 0000000000 000 000012
Q ss_pred HHHHHHhhhhccc--c-------------CCCCCceEEEEecCCCCCccchhHHHHHHHHhh------------------
Q 003873 454 KELVSNEALSANM--D-------------RSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK------------------ 500 (790)
Q Consensus 454 ~e~l~~a~~~~~~--~-------------~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~------------------ 500 (790)
.+++......... . .......+|||||++.|....+..|..+++.-.
T Consensus 168 ~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~ 247 (604)
T 3k1j_A 168 GALLGDVRHDPFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTE 247 (604)
T ss_dssp HHHHCEECCCCC----CCCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCS
T ss_pred HhcCceEEechhhcCCccccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCC
Confidence 2222111000000 0 001234599999999998877788887776321
Q ss_pred --cCCCcEEEEecccc-hhhhhhcccccc----ccccCC---CCHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHc
Q 003873 501 --ISKIPIICICNDRY-SQKLKSLVNYCS----DLRFRK---PRKQEIAKRLMQIANAE-----GLEVNEIALEELADRV 565 (790)
Q Consensus 501 --~s~~pII~I~nd~~-~~~l~~L~sR~~----~I~F~~---pt~~ei~~iL~~I~~~E-----gi~i~~~~l~~Ia~~s 565 (790)
..++.||+++|... ....++|++||. .+.|.. -....+..++..++... ...++++++..|++.+
T Consensus 248 ~~p~~~~vI~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~ 327 (604)
T 3k1j_A 248 PVPCDFVLVAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREA 327 (604)
T ss_dssp CEECCCEEEEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHH
T ss_pred ccceeEEEEEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHH
Confidence 11334777777542 234478889984 455543 24556666666665432 2578999999999876
Q ss_pred ---cC-------CHHHHHHHHHHHHh-----cCCCCCHHHHHHHHH
Q 003873 566 ---NG-------DIRMAINQLQYMSL-----SLSVIKYDDIRQRLL 596 (790)
Q Consensus 566 ---~G-------DiR~aIn~Lq~~~~-----~~~~it~~~v~~~~~ 596 (790)
.| ++|.+.++|+.+.. ....|+.+++.+++.
T Consensus 328 ~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 328 QKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp HHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred hhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 56 59999999976542 246789999988764
No 85
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.27 E-value=3.5e-12 Score=125.86 Aligned_cols=134 Identities=16% Similarity=0.238 Sum_probs=84.3
Q ss_pred hhcCCCCCccccC----CHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh--
Q 003873 348 EKYRPKTPNEIVG----NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML-- 421 (790)
Q Consensus 348 eKY~P~sl~dLvG----~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel-- 421 (790)
++|++.+|+++++ ++..++.++.|+.+|.. .....++|+||+|+||||++++++..+
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNP-----------------EEGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCG-----------------GGCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccc-----------------cCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999997 34555666666665321 125789999999999999999999887
Q ss_pred --CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCC--CCccchhHHHHHHH
Q 003873 422 --GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG--MSAGDRGGIADLIA 497 (790)
Q Consensus 422 --g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~--L~~~~~~~l~~Ll~ 497 (790)
|..++.++..+.... +.......... .++.. .....||||||++. +....+..+..+++
T Consensus 65 ~~g~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~----------~~~~~llilDE~~~~~~~~~~~~~l~~ll~ 127 (180)
T 3ec2_A 65 KKGIRGYFFDTKDLIFR----LKHLMDEGKDT---KFLKT----------VLNSPVLVLDDLGSERLSDWQRELISYIIT 127 (180)
T ss_dssp HSCCCCCEEEHHHHHHH----HHHHHHHTCCS---HHHHH----------HHTCSEEEEETCSSSCCCHHHHHHHHHHHH
T ss_pred HcCCeEEEEEHHHHHHH----HHHHhcCchHH---HHHHH----------hcCCCEEEEeCCCCCcCCHHHHHHHHHHHH
Confidence 666666654422100 00000000000 11111 01346999999984 44445566777777
Q ss_pred HhhcCCCcEEEEecccch
Q 003873 498 SIKISKIPIICICNDRYS 515 (790)
Q Consensus 498 ~i~~s~~pII~I~nd~~~ 515 (790)
.......++|+++|....
T Consensus 128 ~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 128 YRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHTTCEEEEECCCCSC
T ss_pred HHHHcCCCEEEEcCCChh
Confidence 666667889999886543
No 86
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.26 E-value=9.7e-12 Score=113.16 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=72.0
Q ss_pred CCCCCCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCC--CcchHHHHHHhCCceeCHHHHHH
Q 003873 198 PEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDI--AGAKSTKAKELGTPFLTEDGLFD 275 (790)
Q Consensus 198 ~~~~~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~--g~~K~~kA~~~~i~ii~e~~f~~ 275 (790)
+...+.+|.|++|||||.+. .+|.+++++|+.+||+|..+|+++||+||+|.++ ..+|+++|+++||+||+++.|.+
T Consensus 9 ~~~~~~~l~g~~i~isg~~~-~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~ 87 (107)
T 3l3e_A 9 KEEAPKPLHKVVVCVSKKLS-KKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLD 87 (107)
T ss_dssp -----CTTTTCEEEECGGGG-GGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHH
T ss_pred cccccCCCCCeEEEEeCCCh-HhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHH
Confidence 34455689999999999996 8999999999999999999999999999998644 46999999999999999999999
Q ss_pred HHhhcC
Q 003873 276 MIRASK 281 (790)
Q Consensus 276 ~l~~~~ 281 (790)
.+....
T Consensus 88 c~~~~~ 93 (107)
T 3l3e_A 88 CAQECK 93 (107)
T ss_dssp HHHHTS
T ss_pred HHHhCC
Confidence 998653
No 87
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=9.3e-12 Score=117.21 Aligned_cols=77 Identities=21% Similarity=0.279 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 202 PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 202 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
..+|.|++|||||.+ ..+|++++.+|+.+||+|+.+|+++||+||++...+ +|+++|.++||+||+++.|++.+...
T Consensus 20 ~~~f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~-~K~~~A~~~gi~IV~~~Wl~d~~~~~ 96 (129)
T 2d8m_A 20 GKILQGVVVVLSGFQ-NPFRSELRDKALELGAKYRPDWTRDSTHLICAFANT-PKYSQVLGLGGRIVRKEWVLDCHRMR 96 (129)
T ss_dssp TTTSTTEEEEEESCC-TTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSC-HHHHHHHHHTCEEEETHHHHHHHHTT
T ss_pred cccCCCeEEEEeCCC-cHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCC-hHHHHHHHCCCcEecHHHHHHHHHhC
Confidence 347999999999988 689999999999999999999999999999998765 89999999999999999999999765
No 88
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.23 E-value=1.6e-11 Score=148.54 Aligned_cols=201 Identities=15% Similarity=0.255 Sum_probs=126.7
Q ss_pred hcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 349 KYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 349 KY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.+.+.+++||+|++.++++|+.|+..+.... ..- .......+.++||+|||||||||+|++||.+++..++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~---~~~----~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHP---ALF----KAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCG---GGG----TSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCH---HHH----HhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 4567789999999999999999997633210 000 001124567899999999999999999999999999999
Q ss_pred eCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc--------hhHHHHHHHHhh
Q 003873 429 NASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD--------RGGIADLIASIK 500 (790)
Q Consensus 429 naSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~--------~~~l~~Ll~~i~ 500 (790)
++++..+... +.....+..++..+.. ..+.+|||||+|.+.... +..+..++..+.
T Consensus 270 ~~~~l~~~~~--------g~~~~~l~~vf~~a~~--------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~ 333 (806)
T 1ypw_A 270 NGPEIMSKLA--------GESESNLRKAFEEAEK--------NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 333 (806)
T ss_dssp EHHHHSSSST--------THHHHHHHHHHHHHHH--------HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHH
T ss_pred EchHhhhhhh--------hhHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhh
Confidence 9865433211 1112345566665432 235799999999887521 122333444333
Q ss_pred ----cCCCcEEEEecccchhhh-hhccc--cc-cccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHH
Q 003873 501 ----ISKIPIICICNDRYSQKL-KSLVN--YC-SDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMA 572 (790)
Q Consensus 501 ----~s~~pII~I~nd~~~~~l-~~L~s--R~-~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~a 572 (790)
...+.+|+++|+. ..+ +.+++ |+ ..+.|..|+.++...+|...+....+. .+..+..++..+.|.....
T Consensus 334 g~~~~~~v~vI~atn~~--~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~d 410 (806)
T 1ypw_A 334 GLKQRAHVIVMAATNRP--NSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGAD 410 (806)
T ss_dssp SSCTTSCCEEEEECSCT--TTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHH
T ss_pred hhcccccEEEecccCCc--hhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHH
Confidence 2233444455542 233 33433 44 347899999999999998776543332 2234667777777755544
Q ss_pred HHH
Q 003873 573 INQ 575 (790)
Q Consensus 573 In~ 575 (790)
+..
T Consensus 411 l~~ 413 (806)
T 1ypw_A 411 LAA 413 (806)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 89
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.22 E-value=8.5e-12 Score=119.07 Aligned_cols=113 Identities=15% Similarity=0.194 Sum_probs=82.6
Q ss_pred cccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCc
Q 003873 357 EIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGK 436 (790)
Q Consensus 357 dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk 436 (790)
+++|+...++.+...+..+-. ...++||+||||||||++|+++++..+ .++++|+++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~------------------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~- 64 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK------------------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI- 64 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT------------------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH-
T ss_pred CceeCCHHHHHHHHHHHHHhC------------------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh-
Confidence 689999999999999887421 246799999999999999999998887 888888875311
Q ss_pred hhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecccc
Q 003873 437 ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY 514 (790)
Q Consensus 437 ~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd~~ 514 (790)
.....++..+ ...+|||||+|.+....+..+..+++......+.||+++|...
T Consensus 65 --------------~~~~~~~~~a-----------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~ 117 (143)
T 3co5_A 65 --------------DMPMELLQKA-----------EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAA 117 (143)
T ss_dssp --------------HCHHHHHHHT-----------TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECT
T ss_pred --------------HhhhhHHHhC-----------CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCH
Confidence 0123333332 2358999999999988777777777765455677888888553
No 90
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.19 E-value=3.5e-10 Score=121.98 Aligned_cols=195 Identities=14% Similarity=0.140 Sum_probs=122.5
Q ss_pred CCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCC
Q 003873 352 PKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431 (790)
Q Consensus 352 P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaS 431 (790)
|.....++|++..++.|..++.. .+.++|+||+|+|||++++.+++.++ ++.+++.
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~----------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~ 63 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN----------------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCR 63 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH----------------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred CCChHhcCChHHHHHHHHHHHhc----------------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence 34457899999999999999876 16899999999999999999999986 6667654
Q ss_pred CCC------Cch--hhhhhcccCC-------------------C-chhHHHHHHHHhhhhccccCCCCCceEEEEecCCC
Q 003873 432 DSR------GKA--DAKISKGIGG-------------------S-NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDG 483 (790)
Q Consensus 432 d~r------sk~--~~~i~~~~g~-------------------s-~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~ 483 (790)
... ... ...+...+.. . ....+.+++........ ...+.||||||++.
T Consensus 64 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~vlvlDe~~~ 139 (350)
T 2qen_A 64 ELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGE----ELGEFIVAFDEAQY 139 (350)
T ss_dssp HHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHH----HHSCEEEEEETGGG
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHh----ccCCEEEEEeCHHH
Confidence 321 100 0011111110 0 00112222222110000 01257999999999
Q ss_pred CCc----cchhHHHHHHH-Hhhc-CCCcEEEEecccc--hhh------hhhccccc-cccccCCCCHHHHHHHHHHHHHH
Q 003873 484 MSA----GDRGGIADLIA-SIKI-SKIPIICICNDRY--SQK------LKSLVNYC-SDLRFRKPRKQEIAKRLMQIANA 548 (790)
Q Consensus 484 L~~----~~~~~l~~Ll~-~i~~-s~~pII~I~nd~~--~~~------l~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~ 548 (790)
+.. ... .+..++. .+.. ..+.+|+++.... ... ..++..|. ..+.+.+++.+++..++...+..
T Consensus 140 ~~~~~~~~~~-~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~ 218 (350)
T 2qen_A 140 LRFYGSRGGK-ELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFRE 218 (350)
T ss_dssp GGGBTTTTTH-HHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred HhccCccchh-hHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHH
Confidence 875 122 2222332 2222 3566777765432 111 12344444 47999999999999999988777
Q ss_pred cCCCCCHHHHHHHHHHccCCHHHHHHH
Q 003873 549 EGLEVNEIALEELADRVNGDIRMAINQ 575 (790)
Q Consensus 549 Egi~i~~~~l~~Ia~~s~GDiR~aIn~ 575 (790)
.+..++++.+..|+..++|++..+...
T Consensus 219 ~~~~~~~~~~~~i~~~tgG~P~~l~~~ 245 (350)
T 2qen_A 219 VNLDVPENEIEEAVELLDGIPGWLVVF 245 (350)
T ss_dssp TTCCCCHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 788899999999999999999764433
No 91
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.17 E-value=3.8e-11 Score=114.74 Aligned_cols=116 Identities=15% Similarity=0.271 Sum_probs=83.0
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
.+|+|+...++.+...+..+- ....++||+||||||||++|++++... +..++ ++++.
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a------------------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~ 61 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLS------------------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELT 61 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHT------------------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC
T ss_pred CCceeCCHHHHHHHHHHHHHh------------------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCC
Confidence 368999999999999988742 134689999999999999999999886 67788 98875
Q ss_pred CCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 433 SRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 433 ~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
.... .....++..+ ...+|||||+|.|....+..+..++.. ....+.||+++|.
T Consensus 62 ~~~~--------------~~~~~~~~~a-----------~~g~l~ldei~~l~~~~q~~Ll~~l~~-~~~~~~~I~~t~~ 115 (145)
T 3n70_A 62 PDNA--------------PQLNDFIALA-----------QGGTLVLSHPEHLTREQQYHLVQLQSQ-EHRPFRLIGIGDT 115 (145)
T ss_dssp TTTS--------------SCHHHHHHHH-----------TTSCEEEECGGGSCHHHHHHHHHHHHS-SSCSSCEEEEESS
T ss_pred CCcc--------------hhhhcHHHHc-----------CCcEEEEcChHHCCHHHHHHHHHHHhh-cCCCEEEEEECCc
Confidence 4321 1123334332 124899999999998777777777642 3446778999986
Q ss_pred cchh
Q 003873 513 RYSQ 516 (790)
Q Consensus 513 ~~~~ 516 (790)
....
T Consensus 116 ~~~~ 119 (145)
T 3n70_A 116 SLVE 119 (145)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 5443
No 92
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.17 E-value=9e-11 Score=134.37 Aligned_cols=206 Identities=11% Similarity=0.066 Sum_probs=121.6
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC--cEEEEeCCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF--QAIEVNASDS 433 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~--~iiEinaSd~ 433 (790)
..|+|++..++.+...+.. ..++||+||||||||++|+++|+.++. .+..+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~----------------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~ 79 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS----------------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS 79 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH----------------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTC
T ss_pred hhhHHHHHHHHHHHHHHhc----------------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcC
Confidence 4689999999988887766 368999999999999999999998843 3444444321
Q ss_pred CCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHh--------hcCCCc
Q 003873 434 RGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI--------KISKIP 505 (790)
Q Consensus 434 rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i--------~~s~~p 505 (790)
.. . ..+|.... ........+............|||||||+.+....+..+..+++.- .....+
T Consensus 80 -t~-~----dL~G~~~~---~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~ 150 (500)
T 3nbx_X 80 -TP-E----EVFGPLSI---QALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMR 150 (500)
T ss_dssp -CH-H----HHHCCBC-------------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCC
T ss_pred -CH-H----HhcCcccH---HHHhhchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchh
Confidence 11 0 11111000 0000000000000000012459999999999888888888777631 122345
Q ss_pred E-EEEecccch--hhhhhcccccc-ccccCCCCH-HHHHHHHHHHH-----------------------HHcCCCCCHHH
Q 003873 506 I-ICICNDRYS--QKLKSLVNYCS-DLRFRKPRK-QEIAKRLMQIA-----------------------NAEGLEVNEIA 557 (790)
Q Consensus 506 I-I~I~nd~~~--~~l~~L~sR~~-~I~F~~pt~-~ei~~iL~~I~-----------------------~~Egi~i~~~~ 557 (790)
+ |+.+|.... ...+.+++|+. .+.+.+|+. ++...+|...+ ...++.+++++
T Consensus 151 ~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v 230 (500)
T 3nbx_X 151 LLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV 230 (500)
T ss_dssp EEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH
T ss_pred hhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH
Confidence 6 444553211 12346777754 377778876 55556655422 22367789999
Q ss_pred HHHHHHHc----------cCCHHHHHHHHHHH---Hh--cCCCCCHHHHH
Q 003873 558 LEELADRV----------NGDIRMAINQLQYM---SL--SLSVIKYDDIR 592 (790)
Q Consensus 558 l~~Ia~~s----------~GDiR~aIn~Lq~~---~~--~~~~it~~~v~ 592 (790)
++.|+... +.+.|.++.++..+ +. +...|+.+++.
T Consensus 231 ~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 231 FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 99888766 45788877666543 22 24456776665
No 93
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.11 E-value=1.6e-12 Score=157.27 Aligned_cols=209 Identities=16% Similarity=0.201 Sum_probs=127.1
Q ss_pred hcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 349 KYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 349 KY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.....++++++|.+.+++.|..++.. ...... . ..........++||+||||||||++|+++|.+++..++.+
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~-~~~~~~-----~-~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 542 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQY-PVEHPD-----K-FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTS-SSSSCT-----T-TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCC
T ss_pred cCccccccccccchhhhhhHHHHHHh-hhhchH-----H-HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34455789999999999888876653 110000 0 0011123567899999999999999999999999999999
Q ss_pred eCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccc-----------hhHHHHHHH
Q 003873 429 NASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGD-----------RGGIADLIA 497 (790)
Q Consensus 429 naSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~-----------~~~l~~Ll~ 497 (790)
++++..++. ++.. ...+..++..+.. ..++||||||+|.|.... ...+..|+.
T Consensus 543 ~~~~l~~~~-------~g~~-~~~i~~~f~~a~~--------~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~ 606 (806)
T 1ypw_A 543 KGPELLTMW-------FGES-EANVREIFDKARQ--------AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILT 606 (806)
T ss_dssp CCSSSTTCC-------TTTS-SHHHHHHHHHHHH--------HCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHT
T ss_pred echHhhhhh-------cCcc-HHHHHHHHHHHHh--------cCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHH
Confidence 988764432 2222 3456677766542 234699999999886421 112334444
Q ss_pred Hhh----cCCCcEEEEecccchhhhhhccc--ccc-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----c
Q 003873 498 SIK----ISKIPIICICNDRYSQKLKSLVN--YCS-DLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRV----N 566 (790)
Q Consensus 498 ~i~----~s~~pII~I~nd~~~~~l~~L~s--R~~-~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s----~ 566 (790)
.+. ...+.||+++|. ...+.+.+++ |+. .|.|..|+.++...+|+..+....+. .+..+..|++.+ +
T Consensus 607 ~ld~~~~~~~v~vI~tTN~-~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg 684 (806)
T 1ypw_A 607 EMDGMSTKKNVFIIGATNR-PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSG 684 (806)
T ss_dssp TCC------CCBCCCCCBS-CGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCCCSCSCGGGSSSCC
T ss_pred HHhcccccCCeEEEEecCC-cccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCC-cccCHHHHHHhccccCH
Confidence 332 122233334442 3334466776 775 68899999999999988766433221 111234455444 3
Q ss_pred CCHHHHHHHHHHHHhc
Q 003873 567 GDIRMAINQLQYMSLS 582 (790)
Q Consensus 567 GDiR~aIn~Lq~~~~~ 582 (790)
.||+.+++.....+..
T Consensus 685 adi~~l~~~a~~~a~~ 700 (806)
T 1ypw_A 685 ADLTEICQRACKLAIR 700 (806)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4777766665555543
No 94
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.03 E-value=6.7e-10 Score=111.28 Aligned_cols=136 Identities=14% Similarity=0.208 Sum_probs=81.3
Q ss_pred hhhhcCCCCCccccCCH----HHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 346 WTEKYRPKTPNEIVGNQ----QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 346 W~eKY~P~sl~dLvG~e----~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
+..+|++.+|+++++.. ..++.+..|+..|.. ...+++++|+||+|+|||++|++++.++
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEP----------------GKKMKGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS----------------SCCCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhh----------------ccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44578899999999854 345566666665311 0123789999999999999999999988
Q ss_pred ---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc--chh-HHHHH
Q 003873 422 ---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG--DRG-GIADL 495 (790)
Q Consensus 422 ---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~--~~~-~l~~L 495 (790)
+..++.+++++... .+...+.... +..++.... ...+|||||++.+... .+. .+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~----------~~~~lilDei~~~~~~~~~~~~ll~~~ 141 (202)
T 2w58_A 79 AKRNVSSLIVYVPELFR----ELKHSLQDQT---MNEKLDYIK----------KVPVLMLDDLGAEAMSSWVRDDVFGPI 141 (202)
T ss_dssp HTTTCCEEEEEHHHHHH----HHHHC---CC---CHHHHHHHH----------HSSEEEEEEECCC---CCGGGTTHHHH
T ss_pred HHcCCeEEEEEhHHHHH----HHHHHhccch---HHHHHHHhc----------CCCEEEEcCCCCCcCCHHHHHHHHHHH
Confidence 67787777653210 1111111001 112222111 1249999999775432 244 33456
Q ss_pred HHHhhcCCCcEEEEecccc
Q 003873 496 IASIKISKIPIICICNDRY 514 (790)
Q Consensus 496 l~~i~~s~~pII~I~nd~~ 514 (790)
++.......++|+++|...
T Consensus 142 l~~~~~~~~~~i~tsn~~~ 160 (202)
T 2w58_A 142 LQYRMFENLPTFFTSNFDM 160 (202)
T ss_dssp HHHHHHTTCCEEEEESSCH
T ss_pred HHHHHhCCCCEEEEcCCCH
Confidence 6654456778999998543
No 95
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.99 E-value=5.6e-09 Score=112.69 Aligned_cols=192 Identities=14% Similarity=0.165 Sum_probs=119.2
Q ss_pred CCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCC
Q 003873 353 KTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432 (790)
Q Consensus 353 ~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd 432 (790)
.....++|++..++.|.. +.. +.++|+||+|+|||++++.+++.++..++.+++..
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~-----------------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA-----------------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS-----------------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CCHHHhcChHHHHHHHHH-hcC-----------------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 345789999999888876 431 58999999999999999999999887788888653
Q ss_pred C-----CCchh--hhhhccc--------------C--------C---C------chhHHHHHHHHhhhhccccCCCCCce
Q 003873 433 S-----RGKAD--AKISKGI--------------G--------G---S------NANSIKELVSNEALSANMDRSKHPKT 474 (790)
Q Consensus 433 ~-----rsk~~--~~i~~~~--------------g--------~---s------~~~~i~e~l~~a~~~~~~~~~~~~~~ 474 (790)
. .+... ..+...+ . + . ....+..++...... .. .+.
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~-~~~ 139 (357)
T 2fna_A 66 FEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQA-----SK-DNV 139 (357)
T ss_dssp GTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHT-----CS-SCE
T ss_pred hccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhc-----CC-CCe
Confidence 2 11100 0000000 0 0 0 011233333221110 01 367
Q ss_pred EEEEecCCCCCcc-ch---hHHHHHHHHhhcCCCcEEEEecccc--hhh------hhhccccc-cccccCCCCHHHHHHH
Q 003873 475 VLIMDEVDGMSAG-DR---GGIADLIASIKISKIPIICICNDRY--SQK------LKSLVNYC-SDLRFRKPRKQEIAKR 541 (790)
Q Consensus 475 VLIIDEiD~L~~~-~~---~~l~~Ll~~i~~s~~pII~I~nd~~--~~~------l~~L~sR~-~~I~F~~pt~~ei~~i 541 (790)
||||||++.+... .. ..+..+.+. ...+.+|+++.... ... ..++..|. ..+.+.+++.+++..+
T Consensus 140 vlvlDe~~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 140 IIVLDEAQELVKLRGVNLLPALAYAYDN--LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp EEEEETGGGGGGCTTCCCHHHHHHHHHH--CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred EEEEECHHHhhccCchhHHHHHHHHHHc--CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHH
Confidence 9999999998642 12 233333332 23566777776432 111 12344454 6799999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 003873 542 LMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY 578 (790)
Q Consensus 542 L~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~ 578 (790)
+...+...+...++. ..|+..++|++..+...+..
T Consensus 218 l~~~~~~~~~~~~~~--~~i~~~t~G~P~~l~~~~~~ 252 (357)
T 2fna_A 218 LRRGFQEADIDFKDY--EVVYEKIGGIPGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHTCCCCCH--HHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcH--HHHHHHhCCCHHHHHHHHHH
Confidence 998776667766654 88999999999875544443
No 96
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.97 E-value=2.5e-10 Score=133.67 Aligned_cols=219 Identities=12% Similarity=0.129 Sum_probs=119.1
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRG 435 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rs 435 (790)
..|+|++.+++.|...|.. +....... .......++||+||||||||++|+++|+.++..++.........
T Consensus 295 ~~I~G~e~vk~al~~~l~~--------g~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~ 365 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG--------GVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAA 365 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC--------CCCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTT
T ss_pred chhcChHHHHHHHHHHHhC--------CCcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccc
Confidence 4699999887776444432 10000000 01122348999999999999999999998865443321100000
Q ss_pred ch-hhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh------------cC
Q 003873 436 KA-DAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK------------IS 502 (790)
Q Consensus 436 k~-~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~------------~s 502 (790)
.. ...+.....+.... ....+.. ....||||||+|.|....+..++.+++.-. ..
T Consensus 366 ~l~~~~~~~~~~g~~~~-~~G~l~~-----------A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~ 433 (595)
T 3f9v_A 366 GLTAAVVREKGTGEYYL-EAGALVL-----------ADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNA 433 (595)
T ss_dssp TSEEECSSGGGTSSCSE-EECHHHH-----------HSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECC
T ss_pred cccceeeeccccccccc-cCCeeEe-----------cCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecC
Confidence 00 00000000000000 0000111 123599999999999988888888887422 12
Q ss_pred CCcEEEEecccch------------hhhhhccccc-cccccCCCCHHHHHHHHHHHHHHcC-------------------
Q 003873 503 KIPIICICNDRYS------------QKLKSLVNYC-SDLRFRKPRKQEIAKRLMQIANAEG------------------- 550 (790)
Q Consensus 503 ~~pII~I~nd~~~------------~~l~~L~sR~-~~I~F~~pt~~ei~~iL~~I~~~Eg------------------- 550 (790)
++.||+++|.... ...++|++|+ ..+.+..+...+...++.+++....
T Consensus 434 ~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ 513 (595)
T 3f9v_A 434 RAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAY 513 (595)
T ss_dssp CCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHH
T ss_pred ceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHH
Confidence 3446777775321 3447899998 3445555444444444444443211
Q ss_pred ------CCCCHHHHHHHHHH---------------ccCCHHHHHHHHHHH---Hh--cCCCCCHHHHHHHH
Q 003873 551 ------LEVNEIALEELADR---------------VNGDIRMAINQLQYM---SL--SLSVIKYDDIRQRL 595 (790)
Q Consensus 551 ------i~i~~~~l~~Ia~~---------------s~GDiR~aIn~Lq~~---~~--~~~~it~~~v~~~~ 595 (790)
-.+++++.+.|++. ..+++|++.+++..+ +. ....|+.+++.+++
T Consensus 514 ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai 584 (595)
T 3f9v_A 514 ARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAI 584 (595)
T ss_dssp HHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHH
Confidence 14555666666665 356788777777543 22 24567888777655
No 97
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.92 E-value=4.6e-09 Score=110.29 Aligned_cols=125 Identities=20% Similarity=0.232 Sum_probs=83.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VL 476 (790)
.++++|+||||||||++|.+||+.++. +-.+|.++.. + .+.. ...+.|+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~~~------------------f--~l~~----------~~~k~i~ 152 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTNEN------------------F--PFND----------CVDKMVI 152 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTCSS------------------C--TTGG----------GSSCSEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccccc------------------c--cccc----------ccccEEE
Confidence 468999999999999999999998754 2333432210 0 0001 1123456
Q ss_pred EEecCCCCCccchhHHHHHHH----Hh--------hcCCCcEEEEecccc----------hhhhhhccccccccccC---
Q 003873 477 IMDEVDGMSAGDRGGIADLIA----SI--------KISKIPIICICNDRY----------SQKLKSLVNYCSDLRFR--- 531 (790)
Q Consensus 477 IIDEiD~L~~~~~~~l~~Ll~----~i--------~~s~~pII~I~nd~~----------~~~l~~L~sR~~~I~F~--- 531 (790)
+.||+. +..+....+..+++ .+ .....|+|++||... ....+.|.+||..|+|.
T Consensus 153 l~Ee~~-~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~ 231 (267)
T 1u0j_A 153 WWEEGK-MTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRL 231 (267)
T ss_dssp EECSCC-EETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCC
T ss_pred Eecccc-chhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEECCCcC
Confidence 666655 44445556666665 11 125679999999632 24557899999999998
Q ss_pred -----CCCHHHHHHHHHHHHHHcCCCCC
Q 003873 532 -----KPRKQEIAKRLMQIANAEGLEVN 554 (790)
Q Consensus 532 -----~pt~~ei~~iL~~I~~~Egi~i~ 554 (790)
+++.++++..+..+ ..+.+.++
T Consensus 232 p~~~~~lt~~~~~~f~~w~-~~~~~~~~ 258 (267)
T 1u0j_A 232 DHDFGKVTKQEVKDFFRWA-KDHVVEVE 258 (267)
T ss_dssp CTTSCCCCHHHHHHHHHHH-HHTCCCCC
T ss_pred CcccCCCCHHHHHHHHHHH-HHcCCCCc
Confidence 89999999999844 77777654
No 98
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.86 E-value=2.8e-09 Score=117.68 Aligned_cols=195 Identities=16% Similarity=0.242 Sum_probs=128.8
Q ss_pred ccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCCc--EEEEeCCCC
Q 003873 356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQ--AIEVNASDS 433 (790)
Q Consensus 356 ~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~~--iiEinaSd~ 433 (790)
.+++|+.....++...+.... .....+||+|++|+||+++|+++....+.. ++.+||+..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a------------------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~ 190 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIA------------------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASI 190 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHH------------------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSS
T ss_pred ccccccchHHHHHHhhhhhhh------------------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccC
Confidence 367888877777776666521 123569999999999999999999877543 999999865
Q ss_pred CCchhhhhhcccCCCch-------hHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh------
Q 003873 434 RGKADAKISKGIGGSNA-------NSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK------ 500 (790)
Q Consensus 434 rsk~~~~i~~~~g~s~~-------~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~------ 500 (790)
.... ++..+.+... ..-...+.. .....||||||+.|+...|..|..+++.-.
T Consensus 191 ~~~~---~~~~lfg~~~g~~tga~~~~~g~~~~-----------a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~ 256 (368)
T 3dzd_A 191 PQEL---AESELFGHEKGAFTGALTRKKGKLEL-----------ADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGG 256 (368)
T ss_dssp CTTT---HHHHHHEECSCSSSSCCCCEECHHHH-----------TTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTC
T ss_pred ChHH---HHHHhcCccccccCCcccccCChHhh-----------cCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCC
Confidence 3221 1111000000 000011111 123589999999999988888888887432
Q ss_pred ----cCCCcEEEEecccchhhh------hhccccccc--cccCCCCH--HHHHHHHHHH----HHHcC---CCCCHHHHH
Q 003873 501 ----ISKIPIICICNDRYSQKL------KSLVNYCSD--LRFRKPRK--QEIAKRLMQI----ANAEG---LEVNEIALE 559 (790)
Q Consensus 501 ----~s~~pII~I~nd~~~~~l------~~L~sR~~~--I~F~~pt~--~ei~~iL~~I----~~~Eg---i~i~~~~l~ 559 (790)
...+.||+.+|......+ +.|..|+.. |.++|+.. +++..++... +...+ ..+++++++
T Consensus 257 ~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 336 (368)
T 3dzd_A 257 NQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKE 336 (368)
T ss_dssp CCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHH
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 124568888886654443 346677655 55777765 5665554443 44444 348999999
Q ss_pred HHHHHc-cCCHHHHHHHHHHHHhc
Q 003873 560 ELADRV-NGDIRMAINQLQYMSLS 582 (790)
Q Consensus 560 ~Ia~~s-~GDiR~aIn~Lq~~~~~ 582 (790)
.|..+. .||+|++.|.++.++..
T Consensus 337 ~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 337 YLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp HHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHh
Confidence 999987 89999999999987654
No 99
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.86 E-value=1.9e-09 Score=116.16 Aligned_cols=135 Identities=18% Similarity=0.277 Sum_probs=79.0
Q ss_pred hhhhcCCCCCccccCCH----HHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 346 WTEKYRPKTPNEIVGNQ----QLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 346 W~eKY~P~sl~dLvG~e----~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
+...|++.+|+++++.. .++..+..|+..|.. ....+++|+||||||||++|.++|+++
T Consensus 114 l~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~-----------------~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 114 LPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPS-----------------AEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp SCGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSC-----------------SSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccc-----------------cCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34567788999999733 345566677776421 124799999999999999999999865
Q ss_pred ----CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc--cchh-HHHH
Q 003873 422 ----GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA--GDRG-GIAD 494 (790)
Q Consensus 422 ----g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~--~~~~-~l~~ 494 (790)
|+.++.+++++... .+...+. ...+..++... ....||||||++.... ..+. .+..
T Consensus 177 ~~~~g~~v~~~~~~~l~~----~l~~~~~---~~~~~~~~~~~----------~~~~lLiiDdig~~~~~~~~~~~ll~~ 239 (308)
T 2qgz_A 177 SEKKGVSTTLLHFPSFAI----DVKNAIS---NGSVKEEIDAV----------KNVPVLILDDIGAEQATSWVRDEVLQV 239 (308)
T ss_dssp HHHSCCCEEEEEHHHHHH----HHHCCCC-------CCTTHHH----------HTSSEEEEETCCC------CTTTTHHH
T ss_pred HHhcCCcEEEEEHHHHHH----HHHHHhc---cchHHHHHHHh----------cCCCEEEEcCCCCCCCCHHHHHHHHHH
Confidence 47787777653100 0111000 00011111110 1235999999965433 3333 3444
Q ss_pred HHHHhhcCCCcEEEEecccc
Q 003873 495 LIASIKISKIPIICICNDRY 514 (790)
Q Consensus 495 Ll~~i~~s~~pII~I~nd~~ 514 (790)
+++.....+.++|+++|...
T Consensus 240 ll~~r~~~~~~~IitSN~~~ 259 (308)
T 2qgz_A 240 ILQYRMLEELPTFFTSNYSF 259 (308)
T ss_dssp HHHHHHHHTCCEEEEESSCH
T ss_pred HHHHHHHCCCcEEEECCCCH
Confidence 66654445678999998543
No 100
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.79 E-value=7.6e-08 Score=106.86 Aligned_cols=205 Identities=16% Similarity=0.190 Sum_probs=130.5
Q ss_pred CccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC---CcEEEEeCC
Q 003873 355 PNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG---FQAIEVNAS 431 (790)
Q Consensus 355 l~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg---~~iiEinaS 431 (790)
+..++|+...++++...+...- .....+||+|++|+||+++|+++..... .+++.+||+
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a------------------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~ 197 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKIS------------------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVA 197 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHT------------------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETT
T ss_pred chhhhhccHHhhHHHHHHHHhc------------------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecC
Confidence 3468888777777777666521 1235689999999999999999988764 579999998
Q ss_pred CCCCchhhhhhcccCCCchhH-------HHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh----
Q 003873 432 DSRGKADAKISKGIGGSNANS-------IKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK---- 500 (790)
Q Consensus 432 d~rsk~~~~i~~~~g~s~~~~-------i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~---- 500 (790)
..... .++..+.+..... -..++.. ....+||||||+.|+...+..+..+++.-.
T Consensus 198 ~~~~~---~~~~elfg~~~g~~tga~~~~~g~~~~-----------a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~ 263 (387)
T 1ny5_A 198 SIPRD---IFEAELFGYEKGAFTGAVSSKEGFFEL-----------ADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRL 263 (387)
T ss_dssp TSCHH---HHHHHHHCBCTTSSTTCCSCBCCHHHH-----------TTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCB
T ss_pred CCCHH---HHHHHhcCCCCCCCCCcccccCCceee-----------CCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeC
Confidence 64221 1111111100000 0011111 224589999999999988888888887522
Q ss_pred ------cCCCcEEEEecccchhhh------hhccccccc--cccCCCCH--HHHHHHHH----HHHHHcCC---CCCHHH
Q 003873 501 ------ISKIPIICICNDRYSQKL------KSLVNYCSD--LRFRKPRK--QEIAKRLM----QIANAEGL---EVNEIA 557 (790)
Q Consensus 501 ------~s~~pII~I~nd~~~~~l------~~L~sR~~~--I~F~~pt~--~ei~~iL~----~I~~~Egi---~i~~~~ 557 (790)
...+.||+.+|......+ +.|..|... |.++|+.. +++..++. ..+.+.+. .+++++
T Consensus 264 g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a 343 (387)
T 1ny5_A 264 GGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSA 343 (387)
T ss_dssp TCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHH
T ss_pred CCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 235568888886554443 334455443 45555543 55554444 34444443 378999
Q ss_pred HHHHHHHc-cCCHHHHHHHHHHHHhc--CCCCCHHHH
Q 003873 558 LEELADRV-NGDIRMAINQLQYMSLS--LSVIKYDDI 591 (790)
Q Consensus 558 l~~Ia~~s-~GDiR~aIn~Lq~~~~~--~~~it~~~v 591 (790)
++.|.... .||+|++-|.++.++.. +..|+.+++
T Consensus 344 ~~~l~~~~wpGNvreL~~~i~~~~~~~~~~~i~~~~l 380 (387)
T 1ny5_A 344 QELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGEL 380 (387)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHHHHCCSSEECHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhCCCCcCcHHHC
Confidence 99999876 89999999999887754 234555554
No 101
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.75 E-value=2.7e-08 Score=95.67 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=70.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPK 473 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~ 473 (790)
...++|+||+|+||||++++++..+ |..+++++..+.... .++ ...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~------------------~~~-------------~~~ 84 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT------------------DAA-------------FEA 84 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC------------------GGG-------------GGC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH------------------HHH-------------hCC
Confidence 3689999999999999999999988 777888887654221 000 123
Q ss_pred eEEEEecCCCCCccchhHHHHHHHHhhcCCCc-EEEEecccchh--hhhhcccccc
Q 003873 474 TVLIMDEVDGMSAGDRGGIADLIASIKISKIP-IICICNDRYSQ--KLKSLVNYCS 526 (790)
Q Consensus 474 ~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~p-II~I~nd~~~~--~l~~L~sR~~ 526 (790)
.||||||++.+....+..+..+++.+.....+ +|++++..... ..+.|.+|+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHh
Confidence 69999999998776677788888776666667 77777643221 1166666654
No 102
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.70 E-value=1.5e-08 Score=108.67 Aligned_cols=78 Identities=24% Similarity=0.357 Sum_probs=71.4
Q ss_pred CCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEeccccc-ccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 202 PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVS-KKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 202 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs-~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
...|.|.+|||||.+ ..+|++++.+|+.+||+++.+++ ++||+||+++..| +|+++|+++||+||+++.|++.+...
T Consensus 197 ~~~f~g~~i~~tG~~-~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g-~K~~~A~~~gi~IV~~~Wl~dsi~~g 274 (298)
T 3olc_X 197 CPIFLGCIICVTGLC-GLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKG-QKYECAKRWNVHCVTTQWFFDSIEKG 274 (298)
T ss_dssp CCTTTTCEEEECSCC-HHHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCS-HHHHHHHHTTCEEECHHHHHHHHHHT
T ss_pred ccccCCeEEEEeCCC-CccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCc-hHHHHHHHCCCeEEeHHHHHHHHHCC
Confidence 347999999999966 46999999999999999999999 8999999999876 89999999999999999999999865
Q ss_pred C
Q 003873 281 K 281 (790)
Q Consensus 281 ~ 281 (790)
.
T Consensus 275 ~ 275 (298)
T 3olc_X 275 F 275 (298)
T ss_dssp S
T ss_pred C
Confidence 3
No 103
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.65 E-value=3e-08 Score=110.66 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=71.4
Q ss_pred CCCCCCCcEEEEEecCCCC---CHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHh-CCceeCHHHHHHH
Q 003873 201 APDCLGGLTFVISGTLDSL---EREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKEL-GTPFLTEDGLFDM 276 (790)
Q Consensus 201 ~~~~l~g~~~v~TG~l~~~---~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~-~i~ii~e~~f~~~ 276 (790)
...+|.|.+|||||.+... +|.+++.+|+.+||++..+|+++||+||||... ++|+++|.++ ||+||+++.|++.
T Consensus 349 k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~-t~K~~~A~~~g~IkIVs~~WL~dc 427 (442)
T 3ef1_A 349 KQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIR-TEKVKKAVSMGNIKVVKLNWLTES 427 (442)
T ss_dssp HHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCC-CHHHHHHHHHSSSEEEEHHHHHHH
T ss_pred hhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCC-CHHHHHHHhcCCCEEEeHHHHHHH
Confidence 3448999999999999654 689999999999999999999999999999765 4999999999 5999999999999
Q ss_pred Hhhc
Q 003873 277 IRAS 280 (790)
Q Consensus 277 l~~~ 280 (790)
+...
T Consensus 428 l~~~ 431 (442)
T 3ef1_A 428 LSQW 431 (442)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9764
No 104
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.64 E-value=4e-08 Score=108.13 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=70.5
Q ss_pred CCCCCCcEEEEEecCCCC---CHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHh-CCceeCHHHHHHHH
Q 003873 202 PDCLGGLTFVISGTLDSL---EREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKEL-GTPFLTEDGLFDMI 277 (790)
Q Consensus 202 ~~~l~g~~~v~TG~l~~~---~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~-~i~ii~e~~f~~~l 277 (790)
..+|.|.+|||||.+... .|.+++.+|+.+||+|+++|+++||+||+|...+ +|+++|+++ ||+||+++.|.+.+
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t-~K~~~A~~~~~I~IV~~~Wl~~c~ 358 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRT-EKVKKAVSMGNIKVVKLNWLTESL 358 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCC-HHHHHHHHSSSCCEEEHHHHHHHH
T ss_pred hhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCc-hHHHHHHhcCCCEEEcHHHHHHHH
Confidence 358999999999999765 4599999999999999999999999999997654 999999999 89999999999998
Q ss_pred hhc
Q 003873 278 RAS 280 (790)
Q Consensus 278 ~~~ 280 (790)
...
T Consensus 359 ~~~ 361 (372)
T 3ef0_A 359 SQW 361 (372)
T ss_dssp HTT
T ss_pred HhC
Confidence 654
No 105
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.62 E-value=5.2e-08 Score=98.24 Aligned_cols=105 Identities=11% Similarity=0.123 Sum_probs=61.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VL 476 (790)
.+++||+||||||||++|.++|+.+...++.+..+ .+. + .+.. ....+||
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans--~s~----------------f--~l~~----------l~~~kIi 107 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNS--TSH----------------F--WLEP----------LTDTKVA 107 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCS--SSC----------------G--GGGG----------GTTCSSE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEec--cch----------------h--hhcc----------cCCCCEE
Confidence 46899999999999999999999987655432111 000 0 0000 0123489
Q ss_pred EEecCCCCCccc-hhHHHHHHHHh-------h-----cCCCcEEEEecccc--hhhhhhccccccccccC
Q 003873 477 IMDEVDGMSAGD-RGGIADLIASI-------K-----ISKIPIICICNDRY--SQKLKSLVNYCSDLRFR 531 (790)
Q Consensus 477 IIDEiD~L~~~~-~~~l~~Ll~~i-------~-----~s~~pII~I~nd~~--~~~l~~L~sR~~~I~F~ 531 (790)
+|||+|.-.... ...+..+++.. . ....|+|+++|... ....+.|.+|+..+.|+
T Consensus 108 iLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~ 177 (212)
T 1tue_A 108 MLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFP 177 (212)
T ss_dssp EEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECC
T ss_pred EEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEEcC
Confidence 999998421100 11222333221 0 11358999999643 23346788998887776
No 106
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=98.58 E-value=8.6e-08 Score=84.00 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=64.5
Q ss_pred CCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEeccccc--ccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhh
Q 003873 202 PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVS--KKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA 279 (790)
Q Consensus 202 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs--~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~ 279 (790)
+..|.|++|||+|... -+|++++.+|+.+||++..+++ .++++||++...+ .|+.++ .+++||+++.+++-+..
T Consensus 5 ~~~f~g~~~~i~g~~~-~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~-~K~~~~--~~~~iV~~~Wi~dci~~ 80 (92)
T 4id3_A 5 SKIFKNCVIYINGYTK-PGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPL-KKRIEF--ANYKVVSPDWIVDSVKE 80 (92)
T ss_dssp -CTTTTCEEEECSCCS-SCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCH-HHHHHT--TTSCEECTHHHHHHHHH
T ss_pred ccccCCEEEEEeCCCC-cCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCH-HHHHHc--CCCCEEcccHHHHHHHc
Confidence 4579999999999442 4899999999999999999999 8999999998765 564433 79999999999999986
Q ss_pred cC
Q 003873 280 SK 281 (790)
Q Consensus 280 ~~ 281 (790)
..
T Consensus 81 ~~ 82 (92)
T 4id3_A 81 AR 82 (92)
T ss_dssp TS
T ss_pred CC
Confidence 53
No 107
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.56 E-value=1.8e-07 Score=106.12 Aligned_cols=144 Identities=20% Similarity=0.224 Sum_probs=72.9
Q ss_pred CCccchhhhhcCCCCCcccc-CCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHH
Q 003873 340 QQSSLTWTEKYRPKTPNEIV-GNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVC 418 (790)
Q Consensus 340 ~~~~~lW~eKY~P~sl~dLv-G~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lA 418 (790)
+.++.+|+.||+|.+|++|- +|...+..+..+|.. ....+||.|+||||||+++..++
T Consensus 8 ~~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~---------------------~~~~~li~G~aGTGKT~ll~~~~ 66 (459)
T 3upu_A 8 HHHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE---------------------KKHHVTINGPAGTGATTLTKFII 66 (459)
T ss_dssp -------------CCSSCCCHHHHHHHHHHHHHHHS---------------------SSCEEEEECCTTSCHHHHHHHHH
T ss_pred CCccCCCccccCCCccccCCHHHHHHHHHHHHHHhc---------------------CCCEEEEEeCCCCCHHHHHHHHH
Confidence 45677999999999999996 566677777667665 12489999999999999999998
Q ss_pred HHh---CC-cEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhh------c--cccCCCCCceEEEEecCCCCCc
Q 003873 419 QML---GF-QAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALS------A--NMDRSKHPKTVLIMDEVDGMSA 486 (790)
Q Consensus 419 kel---g~-~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~------~--~~~~~~~~~~VLIIDEiD~L~~ 486 (790)
..+ +. .++-+..+. +....+...++. ....+..++...... . ..........+|||||+..+..
T Consensus 67 ~~l~~~~~~~il~~a~T~---~Aa~~l~~~~~~-~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~ 142 (459)
T 3upu_A 67 EALISTGETGIILAAPTH---AAKKILSKLSGK-EASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDR 142 (459)
T ss_dssp HHHHHTTCCCEEEEESSH---HHHHHHHHHHSS-CEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCH
T ss_pred HHHHhcCCceEEEecCcH---HHHHHHHhhhcc-chhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCH
Confidence 877 44 444443331 111111111110 111233333211000 0 0011123467999999998765
Q ss_pred cchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 487 GDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 487 ~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
. .+..|+..+. ....||+++.+
T Consensus 143 ~---~~~~l~~~~~-~~~~~~~vGD~ 164 (459)
T 3upu_A 143 K---LFKILLSTIP-PWCTIIGIGDN 164 (459)
T ss_dssp H---HHHHHHHHSC-TTCEEEEEECT
T ss_pred H---HHHHHHHhcc-CCCEEEEECCH
Confidence 3 3334444433 45567777654
No 108
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.53 E-value=3.9e-07 Score=121.16 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=87.8
Q ss_pred CcEEEEECCCCCChHHHH-HHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhc-------cccC
Q 003873 397 EKAAILSGSPGMGKTTAA-KLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSA-------NMDR 468 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA-~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~-------~~~~ 468 (790)
.+++||+||||||||++| +++++..++.++.+|.+...+. ..+...+....... ....
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~--------------~~~~~~i~~~~~~~~~~~g~~~~P~ 1332 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT--------------EHILSALHRHTNYVTTSKGLTLLPK 1332 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH--------------HHHHHHHHHHBCCEEETTTEEEEEB
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH--------------HHHHHHHHHHhhhccccCCccccCC
Confidence 479999999999999999 5556555888899998765332 23444444321100 0001
Q ss_pred CCCCceEEEEecCCCCCcc---ch---hHHHHHHHHh--hc---------CCCcEEEEecccc----hhhhhhccccccc
Q 003873 469 SKHPKTVLIMDEVDGMSAG---DR---GGIADLIASI--KI---------SKIPIICICNDRY----SQKLKSLVNYCSD 527 (790)
Q Consensus 469 ~~~~~~VLIIDEiD~L~~~---~~---~~l~~Ll~~i--~~---------s~~pII~I~nd~~----~~~l~~L~sR~~~ 527 (790)
..+++.||||||++....+ ++ ..++.+++.- .. .++-+|+.||... ..+-+.|++||..
T Consensus 1333 ~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~v 1412 (2695)
T 4akg_A 1333 SDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAI 1412 (2695)
T ss_dssp SSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEE
T ss_pred CCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeE
Confidence 1345679999999864432 22 3344444321 00 1234555666532 2344788999999
Q ss_pred cccCCCCHHHHHHHHHHHHHH
Q 003873 528 LRFRKPRKQEIAKRLMQIANA 548 (790)
Q Consensus 528 I~F~~pt~~ei~~iL~~I~~~ 548 (790)
+.+..|+.+++..++..++..
T Consensus 1413 i~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988753
No 109
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.52 E-value=1.2e-07 Score=101.51 Aligned_cols=76 Identities=21% Similarity=0.228 Sum_probs=70.0
Q ss_pred CCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 203 ~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
.+|.|.+|||||... -.|+++.++|+.+||++..+++.+||+||+|...+ .|+.+|.++||+|++++.|.+.+..+
T Consensus 104 ~~l~g~~~~~tG~~~-~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t-~Ky~~A~~~gi~IV~~~Wl~~c~~~~ 179 (298)
T 3olc_X 104 MVMSDVTISCTSLEK-EKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGS-KKYLVAANLKKPILLPSWIKTLWEKS 179 (298)
T ss_dssp CTTTTCEEEEESCCH-HHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCS-HHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred cccCCeEEEeCCCcH-HhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCC-hHHHHHHHCCCeEeeHHHHHHHHHcC
Confidence 379999999999775 48999999999999999999999999999998765 89999999999999999999988654
No 110
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=98.48 E-value=6e-08 Score=88.68 Aligned_cols=77 Identities=12% Similarity=0.187 Sum_probs=70.7
Q ss_pred CCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhhcCC
Q 003873 204 CLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKP 282 (790)
Q Consensus 204 ~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~~~~ 282 (790)
+|.|.+||||| |...+|.+++++|+.+||.++..++++++.||+.+..+ .|++.|.+.+|+|++.+-|++=|+.+..
T Consensus 21 ~F~g~~Ic~sG-f~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~-~K~~~A~~~~i~IVs~eWl~dsi~~g~~ 97 (112)
T 3l46_A 21 PFQDCILSFLG-FSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIV-KDLPFEPSKKLYVVKQEWFWGSIQMDAR 97 (112)
T ss_dssp TTTTCEECEES-CCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTB-SSCSSCCCSSCEEEEHHHHHHHHHHTSC
T ss_pred ccCCeEEEEeC-CCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCch-hhHHHHHHCCeeEecHHHHHHHHHcCCc
Confidence 79999999999 77789999999999999999999999999999988665 6888999999999999999999987643
No 111
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.34 E-value=3e-07 Score=83.73 Aligned_cols=76 Identities=11% Similarity=0.151 Sum_probs=69.3
Q ss_pred CCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhhcC
Q 003873 204 CLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASK 281 (790)
Q Consensus 204 ~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~~~ 281 (790)
.|.|.+||||| |...+|.+++.+|+.+||.++..++.++++|||.+.. ..|++.|.+.+|+|++.+-|.+=|+...
T Consensus 12 ~F~g~~i~~sg-~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~-~~K~~~a~~~~i~IV~~~Wl~dsi~~g~ 87 (109)
T 2cou_A 12 PFQDCILSFLG-FSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENT-VKDLPFEPSKKLFVVKQEWFWGSIQMDA 87 (109)
T ss_dssp TTTTCBEEEES-SCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTT-CSSCSSCCCTTSEEECHHHHHHHHHTTS
T ss_pred cCCCeEEEecC-CCHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCc-cHHHHHHHHCCCeEecHHHHHHHHHcCC
Confidence 69999999999 7678999999999999999999999999999998654 4889999999999999999999988653
No 112
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.33 E-value=1.8e-06 Score=85.38 Aligned_cols=72 Identities=10% Similarity=0.142 Sum_probs=48.6
Q ss_pred CceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEec-ccchhhhhhcccc--ccccccCCCCHHHHHHHHH
Q 003873 472 PKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICN-DRYSQKLKSLVNY--CSDLRFRKPRKQEIAKRLM 543 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~n-d~~~~~l~~L~sR--~~~I~F~~pt~~ei~~iL~ 543 (790)
.+.+|||||++-+..-+......+.+.+......+|+++. ......+..+.+| |..+.|.+.+.+++...|.
T Consensus 99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~ 173 (178)
T 1ye8_A 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred CCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence 4569999998777666666666677766664444666663 2234455677776 7788888888777666554
No 113
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.10 E-value=2.4e-05 Score=105.08 Aligned_cols=137 Identities=18% Similarity=0.230 Sum_probs=85.4
Q ss_pred CcEEEEECCCCCChHHHHHH-HHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhh-------hccccC
Q 003873 397 EKAAILSGSPGMGKTTAAKL-VCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEAL-------SANMDR 468 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~-lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~-------~~~~~~ 468 (790)
.+++||+||+|||||+++.. +++..++.++.+|.+...+. ..+...+..... +.....
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta--------------~~l~~~~e~~~e~~~~~~~G~~~~p 1369 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP--------------ELLLKTFDHHCEYKRTPSGETVLRP 1369 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH--------------HHHHHHHHHHEEEEECTTSCEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH--------------HHHHHHHhhcceEEeccCCCcccCC
Confidence 47899999999999987755 44444777888998865332 233344432110 001111
Q ss_pred C-CCCceEEEEecCCCCCcc---ch---hHHHHHHHHh-----------hcCCCcEEEEecccc----hhhhhhcccccc
Q 003873 469 S-KHPKTVLIMDEVDGMSAG---DR---GGIADLIASI-----------KISKIPIICICNDRY----SQKLKSLVNYCS 526 (790)
Q Consensus 469 ~-~~~~~VLIIDEiD~L~~~---~~---~~l~~Ll~~i-----------~~s~~pII~I~nd~~----~~~l~~L~sR~~ 526 (790)
. .+++.||||||++.-..+ ++ ..|+.+++.- ...++-+|++||... ..+-+.|.+|+.
T Consensus 1370 ~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~ 1449 (3245)
T 3vkg_A 1370 TQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAP 1449 (3245)
T ss_dssp SSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCC
T ss_pred CcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhce
Confidence 1 255679999999865432 22 3344444421 012234666777543 233467889999
Q ss_pred ccccCCCCHHHHHHHHHHHHH
Q 003873 527 DLRFRKPRKQEIAKRLMQIAN 547 (790)
Q Consensus 527 ~I~F~~pt~~ei~~iL~~I~~ 547 (790)
.+.+..|+.+.+..|+..++.
T Consensus 1450 vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp EEECCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 999999999999999877654
No 114
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.09 E-value=4.8e-05 Score=101.47 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=104.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VL 476 (790)
..++++.||+|||||++|+.+|+.+|..++.+||++.-.. ..+..++..+... ...+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~--------------~~lg~~~~g~~~~---------Gaw~ 701 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY--------------QVLSRLLVGITQI---------GAWG 701 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH--------------HHHHHHHHHHHHH---------TCEE
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh--------------hHhhHHHHHHHhc---------CCEe
Confidence 4688999999999999999999999999999999975432 2344455443321 2489
Q ss_pred EEecCCCCCccchhHHHHHHHHh----h---------------cCCCcEEEEecccch---hhhhhccccccccccCCCC
Q 003873 477 IMDEVDGMSAGDRGGIADLIASI----K---------------ISKIPIICICNDRYS---QKLKSLVNYCSDLRFRKPR 534 (790)
Q Consensus 477 IIDEiD~L~~~~~~~l~~Ll~~i----~---------------~s~~pII~I~nd~~~---~~l~~L~sR~~~I~F~~pt 534 (790)
++||++.+..+....+...+..+ . .....|+++.|..|. .+.+.|++||..+.+..|+
T Consensus 702 ~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd 781 (2695)
T 4akg_A 702 CFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQ 781 (2695)
T ss_dssp EEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCC
T ss_pred eehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCCC
Confidence 99999999886665554433322 1 112235556664432 2336788999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------ccCCHHHHHHHHHHH
Q 003873 535 KQEIAKRLMQIANAEGLEVNEIALEELADR-------------VNGDIRMAINQLQYM 579 (790)
Q Consensus 535 ~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~-------------s~GDiR~aIn~Lq~~ 579 (790)
.+.+.+++.. ..|+.........|+.. .+-.+|.+...|..+
T Consensus 782 ~~~i~ei~l~---s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~a 836 (2695)
T 4akg_A 782 SGTIAEMILQ---IMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNC 836 (2695)
T ss_dssp HHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHH
Confidence 9988887653 24555444444433331 123677776666543
No 115
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=98.08 E-value=1.2e-05 Score=71.16 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=64.7
Q ss_pred CCCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEeccccc-ccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhh
Q 003873 201 APDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVS-KKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRA 279 (790)
Q Consensus 201 ~~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs-~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~ 279 (790)
....|.|.+|+|+|.. ..+|++++.+|..+||++....+ .++++||++...+ .|++.++ +++||+.+-+++=|+.
T Consensus 9 ~~~lF~g~~~~isg~~-~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~-~k~~~~~--~~~iV~p~Wl~dci~~ 84 (97)
T 2ebw_A 9 SSTIFSGVAIYVNGYT-DPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPN-AKIKELK--GEKVIRPEWIVESIKA 84 (97)
T ss_dssp CCCTTTTCEEEECSSC-SSCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCT-THHHHTS--SSCCBCTHHHHHHHHH
T ss_pred CCCCCCCeEEEEeCCC-cccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCCh-HHHHHhc--CCCEeChHHHHHHHHc
Confidence 3457999999999965 46899999999999999988776 6899999998654 6777765 9999999999998876
Q ss_pred c
Q 003873 280 S 280 (790)
Q Consensus 280 ~ 280 (790)
.
T Consensus 85 ~ 85 (97)
T 2ebw_A 85 G 85 (97)
T ss_dssp T
T ss_pred C
Confidence 5
No 116
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.02 E-value=0.00011 Score=85.50 Aligned_cols=193 Identities=17% Similarity=0.127 Sum_probs=107.0
Q ss_pred cCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHH-----hCC-
Q 003873 350 YRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM-----LGF- 423 (790)
Q Consensus 350 Y~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAke-----lg~- 423 (790)
--|.....+||.+..++.|..+|..- ....+.++|+||+|+||||+|..++.. -.+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~------------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~ 179 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKL------------------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFP 179 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTS------------------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCT
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcc------------------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCC
Confidence 45777788999999999999998750 023578999999999999999988642 122
Q ss_pred -cEEEEeCCCCCCc-hhhhhh---cccC---------CCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccch
Q 003873 424 -QAIEVNASDSRGK-ADAKIS---KGIG---------GSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR 489 (790)
Q Consensus 424 -~iiEinaSd~rsk-~~~~i~---~~~g---------~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~ 489 (790)
.++.++.+..... ....+. ..++ ......+...+...... ..++.+||||+++..
T Consensus 180 ~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~------~~~~~LLVLDdv~~~----- 248 (591)
T 1z6t_A 180 GGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR------KHPRSLLILDDVWDS----- 248 (591)
T ss_dssp TCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH------TCTTCEEEEEEECCH-----
T ss_pred CceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc------CCCCeEEEEeCCCCH-----
Confidence 3455554332111 000110 1111 01112222222221100 224579999999752
Q ss_pred hHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccc-cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCC
Q 003873 490 GGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLR-FRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGD 568 (790)
Q Consensus 490 ~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~-F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GD 568 (790)
..++.+ ...+.||+++.+... ...+......+. ..+++.++....+...+... ..-.++.+..|++.++|.
T Consensus 249 ----~~l~~l-~~~~~ilvTsR~~~~--~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~ 320 (591)
T 1z6t_A 249 ----WVLKAF-DSQCQILLTTRDKSV--TDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGS 320 (591)
T ss_dssp ----HHHHTT-CSSCEEEEEESCGGG--GTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTC
T ss_pred ----HHHHHh-cCCCeEEEECCCcHH--HHhcCCCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCC
Confidence 123332 344556666654321 111112222222 25789999998888766321 112246788999999998
Q ss_pred HHHHHHHHHHH
Q 003873 569 IRMAINQLQYM 579 (790)
Q Consensus 569 iR~aIn~Lq~~ 579 (790)
+-.+--+...+
T Consensus 321 PLal~~~a~~l 331 (591)
T 1z6t_A 321 PLVVSLIGALL 331 (591)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 86544333443
No 117
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.93 E-value=4.6e-05 Score=85.65 Aligned_cols=208 Identities=13% Similarity=0.090 Sum_probs=112.1
Q ss_pred ccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHH-HHHhCCcEEEEeCCCCCCc
Q 003873 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLV-CQMLGFQAIEVNASDSRGK 436 (790)
Q Consensus 358 LvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~l-Akelg~~iiEinaSd~rsk 436 (790)
|+||+.++..|.-.|-.. +.+ ....-++||.|+||+ ||++|+.+ ++.+. ..++.... ...
T Consensus 215 I~G~e~vK~aLll~L~GG-------~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~p-R~~ft~g~--~ss 275 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSC-------VGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAP-RGVYVDLR--RTE 275 (506)
T ss_dssp STTCHHHHHHHHHHHTTC-------CSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCS-SEEEEEGG--GCC
T ss_pred cCCCHHHHHHHHHHHcCC-------ccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCC-CeEEecCC--CCC
Confidence 788988776666555441 000 011238999999999 99999999 66543 33332110 000
Q ss_pred hhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhh--------cCCCcEEE
Q 003873 437 ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK--------ISKIPIIC 508 (790)
Q Consensus 437 ~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~--------~s~~pII~ 508 (790)
....... +. +. ........ ........+++|||++.|....+..|++.++.-. ..++.||.
T Consensus 276 ~~gLt~s-~r----~~-----tG~~~~~G-~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIA 344 (506)
T 3f8t_A 276 LTDLTAV-LK----ED-----RGWALRAG-AAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLA 344 (506)
T ss_dssp HHHHSEE-EE----ES-----SSEEEEEC-HHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEE
T ss_pred ccCceEE-EE----cC-----CCcccCCC-eeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEE
Confidence 0000000 00 00 00000000 0001224699999999999999999998887421 23455777
Q ss_pred Eecccc----------hhhhhhccccccccc--cC-------------CCCHHHHHHHHHHHH-HHcCCCCCHHHHHHHH
Q 003873 509 ICNDRY----------SQKLKSLVNYCSDLR--FR-------------KPRKQEIAKRLMQIA-NAEGLEVNEIALEELA 562 (790)
Q Consensus 509 I~nd~~----------~~~l~~L~sR~~~I~--F~-------------~pt~~ei~~iL~~I~-~~Egi~i~~~~l~~Ia 562 (790)
++|... ..+-.++++|+..+. .. .++.+++++++...- ..-...+++++.+.|+
T Consensus 345 A~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~ 424 (506)
T 3f8t_A 345 AINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLE 424 (506)
T ss_dssp EECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHH
T ss_pred EeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHH
Confidence 777532 122357888873321 11 244555666555332 1225678888888777
Q ss_pred HHc------------------cCCHHHHHHHHHH---HHh--cCCCCCHHHHHHHH
Q 003873 563 DRV------------------NGDIRMAINQLQY---MSL--SLSVIKYDDIRQRL 595 (790)
Q Consensus 563 ~~s------------------~GDiR~aIn~Lq~---~~~--~~~~it~~~v~~~~ 595 (790)
... .-.+|+++.++.. ++. .+..++.++++.++
T Consensus 425 ~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai 480 (506)
T 3f8t_A 425 HWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAA 480 (506)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred HHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHH
Confidence 532 1245665555533 222 24567777777654
No 118
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.85 E-value=3.1e-05 Score=83.27 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=54.3
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeC--CCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCce
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA--SDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKT 474 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEina--Sd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~ 474 (790)
.+.+||+||||||||++|..+|.+.|..+++++. .+..+.. . ......+..+..... .. .
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~----~----~~le~~l~~i~~~l~--------~~-~- 184 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGY----N----TDFNVFVDDIARAML--------QH-R- 184 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTC----B----CCHHHHHHHHHHHHH--------HC-S-
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhh----h----cCHHHHHHHHHHHHh--------hC-C-
Confidence 4568999999999999999999876655444443 2111100 0 000111222222211 11 2
Q ss_pred EEEEecCCCCCccc-------------hhHHHHHHHHhhcCCCcEEEEec
Q 003873 475 VLIMDEVDGMSAGD-------------RGGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 475 VLIIDEiD~L~~~~-------------~~~l~~Ll~~i~~s~~pII~I~n 511 (790)
+||||+++.+.... +..+..|...++...+.+|+++|
T Consensus 185 LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn 234 (331)
T 2vhj_A 185 VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN 234 (331)
T ss_dssp EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence 99999999986421 12334444555666777777766
No 119
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.85 E-value=0.00017 Score=83.36 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=100.3
Q ss_pred cCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHH----Hh--CCcE-EEEeCC
Q 003873 359 VGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQ----ML--GFQA-IEVNAS 431 (790)
Q Consensus 359 vG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAk----el--g~~i-iEinaS 431 (790)
+|.+..+++|..||..- .....+.+.|+|+.|+||||+|+.+++ .. .++. +.++.+
T Consensus 131 ~GR~~~~~~l~~~L~~~-----------------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs 193 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-----------------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDS 193 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-----------------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECC
T ss_pred CCchHHHHHHHHHHhcc-----------------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEEC
Confidence 49999999999999761 012357899999999999999999997 22 2332 334555
Q ss_pred CCC--Cch--hhhhhcccCCC------------chhHHHHHHHHhhhhccccCCCCC-ceEEEEecCCCCCccchhHHHH
Q 003873 432 DSR--GKA--DAKISKGIGGS------------NANSIKELVSNEALSANMDRSKHP-KTVLIMDEVDGMSAGDRGGIAD 494 (790)
Q Consensus 432 d~r--sk~--~~~i~~~~g~s------------~~~~i~e~l~~a~~~~~~~~~~~~-~~VLIIDEiD~L~~~~~~~l~~ 494 (790)
... +.. ...+...++.. ....+...+.... ..+ +.+||||+++... .+ .
T Consensus 194 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L--------~~~kr~LlVLDdv~~~~-----~~-~ 259 (549)
T 2a5y_B 194 GTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL--------IDRPNTLFVFDDVVQEE-----TI-R 259 (549)
T ss_dssp CCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH--------TTSTTEEEEEEEECCHH-----HH-H
T ss_pred CCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHH--------cCCCcEEEEEECCCCch-----hh-c
Confidence 432 110 01111111111 0111222222211 233 6899999998732 11 1
Q ss_pred HHHHhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHH
Q 003873 495 LIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGL-EVNEIALEELADRVNGDIRMA 572 (790)
Q Consensus 495 Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi-~i~~~~l~~Ia~~s~GDiR~a 572 (790)
+. ......||+|+.+.... .........+.+.+++.++-...+...+..... .-.++....|++.|+|..=.+
T Consensus 260 ~~---~~~gs~ilvTTR~~~v~--~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl 333 (549)
T 2a5y_B 260 WA---QELRLRCLVTTRDVEIS--NAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATL 333 (549)
T ss_dssp HH---HHTTCEEEEEESBGGGG--GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred cc---ccCCCEEEEEcCCHHHH--HHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHH
Confidence 22 22456677776543221 111112245888999999988888776422211 111346788999998877443
No 120
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.79 E-value=5.6e-05 Score=77.41 Aligned_cols=102 Identities=17% Similarity=0.139 Sum_probs=59.4
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC-CCCchhhhhhcccCCC-------chhHHHHHHHHhhhhcc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD-SRGKADAKISKGIGGS-------NANSIKELVSNEALSAN 465 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd-~rsk~~~~i~~~~g~s-------~~~~i~e~l~~a~~~~~ 465 (790)
...+|++||+|+||||++..++..+ |..++.+++.- .+ . ...+...+|.. ....+.+.+....
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~-~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~---- 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-S-IRNIQSRTGTSLPSVEVESAPEILNYIMSNS---- 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-G-CSSCCCCCCCSSCCEEESSTHHHHHHHHSTT----
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-H-HHHHHHhcCCCccccccCCHHHHHHHHHHHh----
Confidence 4689999999999999998777665 66777776442 22 1 11222222211 1112333332211
Q ss_pred ccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEec
Q 003873 466 MDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 466 ~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~n 511 (790)
......+|+|||+..+... +.+++..+....++|||++-
T Consensus 86 ---~~~~~dvViIDEaQ~l~~~----~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 86 ---FNDETKVIGIDEVQFFDDR----ICEVANILAENGFVVIISGL 124 (223)
T ss_dssp ---SCTTCCEEEECSGGGSCTH----HHHHHHHHHHTTCEEEEECC
T ss_pred ---hCCCCCEEEEecCccCcHH----HHHHHHHHHhCCCeEEEEec
Confidence 1234679999999987653 22233333334789999875
No 121
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.78 E-value=2.8e-05 Score=83.86 Aligned_cols=161 Identities=19% Similarity=0.180 Sum_probs=53.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VL 476 (790)
.+.++|+||+|+||||++..||+.+++.++..+.-...... .++... ....+ .... ...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~------~igTak-p~~~e-~~gv-------------ph~ 63 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGM------DIGTAK-PSREL-LARY-------------PHR 63 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTC------CTTTTC-CCHHH-HHHS-------------CEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCC------CcccCC-CCHHH-HcCC-------------CEE
Confidence 35899999999999999999999999888777543211000 011100 01111 1110 135
Q ss_pred EEecCCCCCccchhHH----HHHHH-HhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCC
Q 003873 477 IMDEVDGMSAGDRGGI----ADLIA-SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGL 551 (790)
Q Consensus 477 IIDEiD~L~~~~~~~l----~~Ll~-~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi 551 (790)
|||.++.........+ ..+++ .....+.||++-++..|... |+.-. ..|+ ....+++..+...+..+|.
T Consensus 64 lid~~~~~~~~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~~y~~a---ll~g~--~~~p-~~~~~~R~~l~~~~~~~g~ 137 (323)
T 3crm_A 64 LIDIRDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKA---LLEGL--ADMP-GADPEVRAAIEAEAQAEGW 137 (323)
T ss_dssp TSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHH---HHCCC--------------------------
T ss_pred EeeccCcccccCHHHHHHHHHHHHHHHHHcCCeEEEECCchhhHHH---HHcCC--CCCC-CCCHHHHHHHHHHHHHcCH
Confidence 6666654433222222 22333 22345666666555444332 22211 1222 2445567777766665553
Q ss_pred --------CCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC
Q 003873 552 --------EVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIK 587 (790)
Q Consensus 552 --------~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~it 587 (790)
.+++.....| ..+|.|++++.|+.+...+..++
T Consensus 138 ~~l~~~L~~~Dp~~a~~i---~~nd~~Ri~RALEv~~~tG~~~s 178 (323)
T 3crm_A 138 EALHRQLAEVDPESAARI---HPNDPQRLMRALEVYRLGGVSMS 178 (323)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHhCHHHHhhc---CCCCHHHHHHHHHHHHHHCCCHH
Confidence 2455443333 35699999999998876655443
No 122
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=97.72 E-value=0.00013 Score=65.91 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=66.3
Q ss_pred CCCCcEEEEEecCCC---CCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 204 CLGGLTFVISGTLDS---LEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 204 ~l~g~~~v~TG~l~~---~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
+|.|.+|.|.+.... ...+.++.++..+||+|...+++.++.||+.+..+ +|+++|++.+|+|++.+-+.+-+...
T Consensus 7 ~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~-~~~~~A~~~~i~iV~~~Wv~~C~~~~ 85 (107)
T 3pa6_A 7 ILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQ-STWDKAQKRGVKLVSVLWVEKCRTAG 85 (107)
T ss_dssp TTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCH-HHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred ccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCC-hHHHHHhcCCCEEECHHHHHHHHHhC
Confidence 699999999887532 23588999999999999999999999999987654 89999999999999999998888765
No 123
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.71 E-value=0.00027 Score=72.26 Aligned_cols=134 Identities=18% Similarity=0.234 Sum_probs=76.0
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCC----------C--chhHHHHHHHHhhh
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGG----------S--NANSIKELVSNEAL 462 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~----------s--~~~~i~e~l~~a~~ 462 (790)
-.+++.|++|+||||++-.+|..+ |+.++-+............+...+.. . ....+...+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~--- 83 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA--- 83 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHH---
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhc---
Confidence 569999999999999988887665 88876655432111110001011000 0 00123332221
Q ss_pred hccccCCCCCceEEEEecCCCCCc-cch-hHHHHHHHHhhcCCCcEEEEecccchhhh-----------------hhccc
Q 003873 463 SANMDRSKHPKTVLIMDEVDGMSA-GDR-GGIADLIASIKISKIPIICICNDRYSQKL-----------------KSLVN 523 (790)
Q Consensus 463 ~~~~~~~~~~~~VLIIDEiD~L~~-~~~-~~l~~Ll~~i~~s~~pII~I~nd~~~~~l-----------------~~L~s 523 (790)
.+.+|||||+-.... ..+ ..+...+..+..+.+.+|.+.|-.+...+ ..++.
T Consensus 84 ---------~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~ 154 (228)
T 2r8r_A 84 ---------APSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQ 154 (228)
T ss_dssp ---------CCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHH
T ss_pred ---------CCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHh
Confidence 246999999987632 221 22233333355677889988884432222 23445
Q ss_pred cccccccCCCCHHHHHHHHH
Q 003873 524 YCSDLRFRKPRKQEIAKRLM 543 (790)
Q Consensus 524 R~~~I~F~~pt~~ei~~iL~ 543 (790)
.+..|.+-.++++++..+|.
T Consensus 155 ~a~~v~lvD~~p~~l~~rl~ 174 (228)
T 2r8r_A 155 EAFDLVLIDLPPRELLERLR 174 (228)
T ss_dssp TCSEEEEBCCCHHHHHHHHH
T ss_pred hCCeEEEecCCHHHHHHHHH
Confidence 56678888888888777754
No 124
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=97.65 E-value=0.0001 Score=77.11 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=69.2
Q ss_pred CCCCCCCCCCCcEEEEEecCCC----------------------------CCHHHHHHHHHHcCCEeccccccc------
Q 003873 197 VPEGAPDCLGGLTFVISGTLDS----------------------------LEREEAEDLIKRHGGRVTGSVSKK------ 242 (790)
Q Consensus 197 ~~~~~~~~l~g~~~v~TG~l~~----------------------------~~R~~~~~~i~~~Gg~v~~~vs~k------ 242 (790)
+|.+ .+.|.|+.|+|||.... ++|.+++.+|+.+||+|...++..
T Consensus 9 ~p~~-~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~ 87 (259)
T 1kzy_C 9 LPLN-KTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAY 87 (259)
T ss_dssp CCSS-TTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTC
T ss_pred CCCC-CcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCC
Confidence 4433 34699999999998753 689999999999999999998865
Q ss_pred ccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 243 TNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 243 t~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
+++||+.......|+-.|..+|++||+.+-+.+-+...
T Consensus 88 ~t~LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~ 125 (259)
T 1kzy_C 88 QCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHAN 125 (259)
T ss_dssp EEEEEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHT
T ss_pred CeEEEcCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcC
Confidence 67899988666789999999999999999988888654
No 125
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.61 E-value=5.9e-05 Score=74.80 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=51.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCC-CCCCchhhhhhcccCCC----chhHHHHHHHHhhhhccccC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNAS-DSRGKADAKISKGIGGS----NANSIKELVSNEALSANMDR 468 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaS-d~rsk~~~~i~~~~g~s----~~~~i~e~l~~a~~~~~~~~ 468 (790)
...++++||+|+||||++..++..+ |..++.+.+. |.|.... .+....+.. ....+.+++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~-~i~s~~g~~~~~~~~~~~~~~~~~--------- 72 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHST-MIVSHSGNGVEAHVIERPEEMRKY--------- 72 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCC-EECC----CEECEEESSGGGGGGG---------
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcc-cEEecCCCceeeEEECCHHHHHHH---------
Confidence 3578999999999999986665543 6666665433 2221100 011101100 00011111111
Q ss_pred CCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEec
Q 003873 469 SKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 469 ~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~n 511 (790)
......+|||||++.+..+. ..++..+.....+||+++.
T Consensus 73 ~~~~~dvviIDE~Q~~~~~~----~~~l~~l~~~~~~Vi~~Gl 111 (184)
T 2orw_A 73 IEEDTRGVFIDEVQFFNPSL----FEVVKDLLDRGIDVFCAGL 111 (184)
T ss_dssp CCTTEEEEEECCGGGSCTTH----HHHHHHHHHTTCEEEEEEE
T ss_pred hcCCCCEEEEECcccCCHHH----HHHHHHHHHCCCCEEEEee
Confidence 01246799999999986532 2233322233788888765
No 126
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.60 E-value=7.3e-05 Score=75.22 Aligned_cols=125 Identities=15% Similarity=0.207 Sum_probs=61.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH--------hC-CcEEEEeCCCCCCchh-----h-hhhcccCCC-chhHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM--------LG-FQAIEVNASDSRGKAD-----A-KISKGIGGS-NANSIKELVSNE 460 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke--------lg-~~iiEinaSd~rsk~~-----~-~i~~~~g~s-~~~~i~e~l~~a 460 (790)
....|++|+||+|||+.|..++.. .| ..++..|..+...... . .+....... ....+.+++..+
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 458899999999999998776443 24 4454555443321100 0 000000000 112222222100
Q ss_pred hhhccccCCCCCceEEEEecCCCCCccc---hhHHHHHHHHh---hcCCCcEEEEecccchhhhhhcccccc-ccccCC
Q 003873 461 ALSANMDRSKHPKTVLIMDEVDGMSAGD---RGGIADLIASI---KISKIPIICICNDRYSQKLKSLVNYCS-DLRFRK 532 (790)
Q Consensus 461 ~~~~~~~~~~~~~~VLIIDEiD~L~~~~---~~~l~~Ll~~i---~~s~~pII~I~nd~~~~~l~~L~sR~~-~I~F~~ 532 (790)
.....||||||++.+.... .+. ..++..+ .....-||+++++ ...+-..++.|+. .++|.+
T Consensus 85 ---------~~~~~vliIDEAq~l~~~~~~~~e~-~rll~~l~~~r~~~~~iil~tq~-~~~l~~~lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 85 ---------ENIGSIVIVDEAQDVWPARSAGSKI-PENVQWLNTHRHQGIDIFVLTQG-PKLLDQNLRTLVRKHYHIAS 152 (199)
T ss_dssp ---------GGTTCEEEETTGGGTSBCCCTTCCC-CHHHHGGGGTTTTTCEEEEEESC-GGGBCHHHHTTEEEEEEEEE
T ss_pred ---------ccCceEEEEEChhhhccCccccchh-HHHHHHHHhcCcCCeEEEEECCC-HHHHhHHHHHHhheEEEEcC
Confidence 2345799999999995321 111 1233333 2334467888876 3333345666644 244443
No 127
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.58 E-value=0.0011 Score=83.08 Aligned_cols=189 Identities=15% Similarity=0.131 Sum_probs=106.9
Q ss_pred cCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh-------C
Q 003873 350 YRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML-------G 422 (790)
Q Consensus 350 Y~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel-------g 422 (790)
--|.....++|.+..+++|..+|..- ....+.+.|+|+.|+||||||..++... .
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~------------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~ 179 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKL------------------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFS 179 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTT------------------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTST
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhc------------------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCC
Confidence 35667788999999999999999751 0235789999999999999998887542 2
Q ss_pred CcEEEEeCCCCCCchh----hhhhcccCC---------CchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccch
Q 003873 423 FQAIEVNASDSRGKAD----AKISKGIGG---------SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDR 489 (790)
Q Consensus 423 ~~iiEinaSd~rsk~~----~~i~~~~g~---------s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~ 489 (790)
..++.++.+....... ..+...++. .....+.+.+.... ....++.+||||+++...
T Consensus 180 ~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l------~~~~~~~LlvlDd~~~~~---- 249 (1249)
T 3sfz_A 180 GGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLM------LRKHPRSLLILDDVWDPW---- 249 (1249)
T ss_dssp TCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHT------SSSSCSCEEEEESCCCHH----
T ss_pred CeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHH------hccCCCEEEEEecCCCHH----
Confidence 2344566554211100 001111110 11222333332211 012346799999998531
Q ss_pred hHHHHHHHHhhcCCCcEEEEecccchhhhhhccccccccccCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCC
Q 003873 490 GGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRK-PRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGD 568 (790)
Q Consensus 490 ~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~-pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GD 568 (790)
.+..+ .....||+++-+.. ....+......+.+.+ ++.++-.+.+...+.... .-.++....|++.++|-
T Consensus 250 -----~~~~~-~~~~~ilvTtR~~~--~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 250 -----VLKAF-DNQCQILLTTRDKS--VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-EDLPAEAHSIIKECKGS 320 (1249)
T ss_dssp -----HHTTT-CSSCEEEEEESSTT--TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-TTCCTHHHHHHHHTTTC
T ss_pred -----HHHhh-cCCCEEEEEcCCHH--HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-hhCcHHHHHHHHHhCCC
Confidence 12211 33455666665432 1112223334566665 888888888876663222 22235678899999876
Q ss_pred HHHHHHHH
Q 003873 569 IRMAINQL 576 (790)
Q Consensus 569 iR~aIn~L 576 (790)
+= ||..+
T Consensus 321 PL-al~~~ 327 (1249)
T 3sfz_A 321 PL-VVSLI 327 (1249)
T ss_dssp HH-HHHHH
T ss_pred HH-HHHHH
Confidence 64 44444
No 128
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.58 E-value=0.00054 Score=68.41 Aligned_cols=37 Identities=22% Similarity=0.142 Sum_probs=31.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd 432 (790)
....++|+||+|+||||++..+|...+..+++++...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4568999999999999999999886677888887654
No 129
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=97.52 E-value=8.5e-05 Score=75.86 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=67.3
Q ss_pred CCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 203 ~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
.++.|.+||||| |..-.|+++..+|+.+||.|...+ .++++||++......|+..|...|++|++.+-+.+-+...
T Consensus 12 ~~~~~~~i~~SG-~~~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~ 87 (219)
T 3sqd_A 12 TPELTPFVLFTG-FEPVQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQ 87 (219)
T ss_dssp CGGGCCEEEECS-CCHHHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHHT
T ss_pred CCCCCeEEEEeC-CChHHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHHcC
Confidence 378999999999 666678999999999999999997 8899999998666679999999999999999988888754
No 130
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.50 E-value=0.0019 Score=87.05 Aligned_cols=158 Identities=15% Similarity=0.196 Sum_probs=104.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVL 476 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VL 476 (790)
..+..+.||+|||||.+++.+|+.+|..++-+||++.-.. ..+..++..+... ....
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~--------------~~~g~i~~G~~~~---------GaW~ 660 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL--------------QAMSRIFVGLCQC---------GAWG 660 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH--------------HHHHHHHHHHHHH---------TCEE
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH--------------HHHHHHHhhHhhc---------CcEE
Confidence 3566799999999999999999999999999999875332 2233444443311 2367
Q ss_pred EEecCCCCCccchhHHHHHHHHhh--------------c------CCCcEEEEecccch---hhhhhccccccccccCCC
Q 003873 477 IMDEVDGMSAGDRGGIADLIASIK--------------I------SKIPIICICNDRYS---QKLKSLVNYCSDLRFRKP 533 (790)
Q Consensus 477 IIDEiD~L~~~~~~~l~~Ll~~i~--------------~------s~~pII~I~nd~~~---~~l~~L~sR~~~I~F~~p 533 (790)
++||++++..+....+...+..|. . ..+.||++.|..|. .+...|+.+|..|.+..|
T Consensus 661 cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~P 740 (3245)
T 3vkg_A 661 CFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKP 740 (3245)
T ss_dssp EEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSC
T ss_pred EehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCC
Confidence 999999998765555444443221 1 12335666675443 333678899999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---H----------ccCCHHHHHHHHHHHH
Q 003873 534 RKQEIAKRLMQIANAEGLEVNEIALEELAD---R----------VNGDIRMAINQLQYMS 580 (790)
Q Consensus 534 t~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~---~----------s~GDiR~aIn~Lq~~~ 580 (790)
+.+.+.+++. ..+|+.-.......|+. . .+-.+|.+-..|..+.
T Consensus 741 d~~~i~ei~L---~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG 797 (3245)
T 3vkg_A 741 DREMIAQVML---YSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAG 797 (3245)
T ss_dssp CHHHHHHHHH---HTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Confidence 9999888764 34676543333333332 1 2346888888886653
No 131
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.47 E-value=0.00023 Score=76.11 Aligned_cols=159 Identities=23% Similarity=0.269 Sum_probs=84.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhccc--CCCchhHHHHHHHHhhhhccccCCCCCc
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI--GGSNANSIKELVSNEALSANMDRSKHPK 473 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~--g~s~~~~i~e~l~~a~~~~~~~~~~~~~ 473 (790)
.++.++|+||+|+|||+++..||+.++..++..+.-. +...+ +.... ...+ ....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q--------vY~~~~igTakp-~~~E-~~~v------------- 65 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSAL--------IYKGMDIGTAKP-NAEE-LLAA------------- 65 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT--------TBTTCCTTTTCC-CHHH-HHHS-------------
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc--------ccccccccCCCC-CHHH-HcCC-------------
Confidence 3568899999999999999999999987766554321 11111 11110 0111 1111
Q ss_pred eEEEEecCCC--CCc-cc-hhHHHHHHH-HhhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHH
Q 003873 474 TVLIMDEVDG--MSA-GD-RGGIADLIA-SIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANA 548 (790)
Q Consensus 474 ~VLIIDEiD~--L~~-~~-~~~l~~Ll~-~i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~ 548 (790)
.--|||.++- ... .+ .......++ .....++|||+=++..|.. .|+. -+...|....+++..|...+..
T Consensus 66 ~hhlid~~~~~e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGTglYi~---all~---gl~~~p~~~~~~R~~l~~~~~~ 139 (316)
T 3foz_A 66 PHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFK---ALLE---GLSPLPSADPEVRARIEQQAAE 139 (316)
T ss_dssp CEETSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHH---HHHS---CCCCCCCCCHHHHHHHHHHHHH
T ss_pred CEEEeccCCccccccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHH---HHHc---CcCCCCCCCHHHHHHHHHHHHh
Confidence 1234454432 221 11 111222333 3345677776655544432 3322 1223344555677777776655
Q ss_pred cCCC--------CCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 003873 549 EGLE--------VNEIALEELADRVNGDIRMAINQLQYMSLSLSVI 586 (790)
Q Consensus 549 Egi~--------i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~i 586 (790)
+|.. +++.... .....|.|+++..|+.+...+..+
T Consensus 140 ~g~~~l~~~L~~~DP~~A~---ri~pnd~~Ri~RALEV~~~TG~~~ 182 (316)
T 3foz_A 140 QGWESLHRQLQEVDPVAAA---RIHPNDPQRLSRALEVFFISGKTL 182 (316)
T ss_dssp HHHHHHHHHHHHHCHHHHH---HSCTTCHHHHHHHHHHHHHHSSCH
T ss_pred cCHHHHHHHHHHhCHHHHh---hCCCccHHHHHHHHHHHHHHCCCH
Confidence 5432 2332221 223689999999999877666544
No 132
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=97.45 E-value=0.00018 Score=73.47 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=67.6
Q ss_pred CCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCC-----CCcchHHHHHHhCCceeCHHHHHHHH
Q 003873 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDED-----IAGAKSTKAKELGTPFLTEDGLFDMI 277 (790)
Q Consensus 203 ~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~-----~g~~K~~kA~~~~i~ii~e~~f~~~l 277 (790)
.++.+..||||| |..-.|+.++++++.+||.|...++.++|+||++.. ...-|+..|...|+.||+.+-|.+-+
T Consensus 3 ~~~~~~~i~~sg-~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~ 81 (229)
T 1l0b_A 3 RAERDISMVVSG-LTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSI 81 (229)
T ss_dssp CCCCCCEEEEES-CCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHHH
T ss_pred CCCCCeEEEEcC-CCHHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHHH
Confidence 368899999999 445679999999999999999999999999999975 35689999999999999998888888
Q ss_pred hhc
Q 003873 278 RAS 280 (790)
Q Consensus 278 ~~~ 280 (790)
...
T Consensus 82 ~~~ 84 (229)
T 1l0b_A 82 QER 84 (229)
T ss_dssp TTT
T ss_pred HCC
Confidence 654
No 133
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=97.43 E-value=0.00029 Score=72.96 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=66.0
Q ss_pred CCCCCcEEEEEec--CCCCCHHHHHHHHHHcCCEeccc-------ccc-------------------cccEEEecCCCCc
Q 003873 203 DCLGGLTFVISGT--LDSLEREEAEDLIKRHGGRVTGS-------VSK-------------------KTNYLLCDEDIAG 254 (790)
Q Consensus 203 ~~l~g~~~v~TG~--l~~~~R~~~~~~i~~~Gg~v~~~-------vs~-------------------kt~~lv~G~~~g~ 254 (790)
+.|.|+.|||||. +....|.+++++|+++||+|... +.. ..++||++.....
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt 80 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRK 80 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCC
T ss_pred CCCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCc
Confidence 3689999999999 77789999999999999999886 121 1278888876667
Q ss_pred chHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 255 AKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 255 ~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
.|+.+|..+||+||+.+-+.+-+...
T Consensus 81 ~K~~~ala~gipiV~~~Wi~dc~~~~ 106 (241)
T 2vxb_A 81 VKYLEALAFNIPCVHPQFIKQCLKMN 106 (241)
T ss_dssp HHHHHHHHHTCCEECTHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEecHHHHHHHHHcC
Confidence 89999999999999999988888764
No 134
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=97.43 E-value=0.00053 Score=61.57 Aligned_cols=79 Identities=14% Similarity=0.291 Sum_probs=68.7
Q ss_pred CCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHh--CCceeCHHHHHHHHhh
Q 003873 202 PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKEL--GTPFLTEDGLFDMIRA 279 (790)
Q Consensus 202 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~--~i~ii~e~~f~~~l~~ 279 (790)
++.|.|.+|+|.|.+..-+|..++.+|..+||.|....+.+++++|+...- ..+++.|.+. ++++|..+-+++-++.
T Consensus 5 pd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~-d~~~~~a~~~~p~~~~V~P~WI~~Ci~~ 83 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEW-DPNFEEALMENPSLAFVRPRWIYSCNEK 83 (104)
T ss_dssp CCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCC-CHHHHHHHTTCTTCEEECHHHHHHHHHH
T ss_pred chhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCC-ChhHHHHhhhCCCCeEEccHHHHHHHhc
Confidence 447999999999998545899999999999999999999999999998764 4788888765 6999999999999986
Q ss_pred cC
Q 003873 280 SK 281 (790)
Q Consensus 280 ~~ 281 (790)
+.
T Consensus 84 ~k 85 (104)
T 3pc6_A 84 QK 85 (104)
T ss_dssp TS
T ss_pred Cc
Confidence 53
No 135
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.42 E-value=0.00047 Score=69.23 Aligned_cols=36 Identities=28% Similarity=0.239 Sum_probs=28.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNAS 431 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaS 431 (790)
....++|.||+|+||||+++.++..+ +..++.++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 34689999999999999999998654 5667666654
No 136
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.40 E-value=0.00027 Score=75.79 Aligned_cols=158 Identities=15% Similarity=0.258 Sum_probs=82.2
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhccc--CCCchhHHHHHHHHhhhhccccCCCCCceE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGI--GGSNANSIKELVSNEALSANMDRSKHPKTV 475 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~--g~s~~~~i~e~l~~a~~~~~~~~~~~~~~V 475 (790)
+.++|+||+|+|||+++..||+.++..++..+.- .+...+ +.... ...+ . ..-.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~--------QvYr~~~igTakp-~~~E-~-------------~gvph 60 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM--------QVYRGMDIGTAKI-TAEE-M-------------DGVPH 60 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG--------GGBTTCCTTTTCC-CHHH-H-------------TTCCE
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc--------cceeeeeecCCCC-CHHH-H-------------cCCCE
Confidence 5789999999999999999999998665544321 111111 11100 0000 0 01113
Q ss_pred EEEecCCCCCccch----hHHHHHHHH-hhcCCCcEEEEecccchhhhhhccccccccccCCC-CHHHHHHHHHHHHHHc
Q 003873 476 LIMDEVDGMSAGDR----GGIADLIAS-IKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKP-RKQEIAKRLMQIANAE 549 (790)
Q Consensus 476 LIIDEiD~L~~~~~----~~l~~Ll~~-i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~p-t~~ei~~iL~~I~~~E 549 (790)
-|||.++--..-.. ......++. ....++|||+=++..|. ++|+. -+.|.+. ...+++..|...+..+
T Consensus 61 hlid~~~~~e~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTglYi---~aLl~---g~~~~~~~~~~~~R~~l~~~~~~~ 134 (322)
T 3exa_A 61 HLIDIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYV---NAVIH---QFNLGDIRADEDYRHELEAFVNSY 134 (322)
T ss_dssp ESSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHHHH---HHHHH---TCCCCCCBCCHHHHHHHHHHHHHS
T ss_pred EEeccCChhhhccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHH---HHHHc---CCcCCCCCCCHHHHHHHHHHHHhc
Confidence 45554442221111 122233332 24556676654444343 23322 2345554 3457888888777766
Q ss_pred CCC--------CCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC
Q 003873 550 GLE--------VNEIALEELADRVNGDIRMAINQLQYMSLSLSVIK 587 (790)
Q Consensus 550 gi~--------i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~it 587 (790)
|.. +++.... ....+|.|+++..|+.+...+..++
T Consensus 135 g~~~L~~~L~~~DP~~A~---~i~pnd~~Ri~RALEV~~~TG~~~S 177 (322)
T 3exa_A 135 GVQALHDKLSKIDPKAAA---AIHPNNYRRVIRALEIIKLTGKTVT 177 (322)
T ss_dssp CHHHHHHHHHTTCHHHHT---TSCTTCHHHHHHHHHHHHHTC----
T ss_pred CHHHHHHHHHhhCHHHHh---hcCcccHHHHHHHHHHHHHHCCCHH
Confidence 632 3333211 1235799999999998877665543
No 137
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.38 E-value=0.00064 Score=74.19 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=61.2
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccC----------CCchhHHHHHHHHhhh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIG----------GSNANSIKELVSNEAL 462 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g----------~s~~~~i~e~l~~a~~ 462 (790)
....++|+||||+||||++..++..+ |..+++++........ ....++ ......+.+++....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~---~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~- 135 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE---YAKKLGVDTDSLLVSQPDTGEQALEIADMLV- 135 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH---HHHHcCCCHHHeEEecCCCHHHHHHHHHHHH-
Confidence 45789999999999999998888654 6678888765432211 111111 111222222222211
Q ss_pred hccccCCCCCceEEEEecCCCCCc--c------c----------hhHHHHHHHHhhcCCCcEEEEec
Q 003873 463 SANMDRSKHPKTVLIMDEVDGMSA--G------D----------RGGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 463 ~~~~~~~~~~~~VLIIDEiD~L~~--~------~----------~~~l~~Ll~~i~~s~~pII~I~n 511 (790)
......+||||++..+.. + + ...+..|...++...++||++..
T Consensus 136 ------~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh 196 (349)
T 2zr9_A 136 ------RSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINE 196 (349)
T ss_dssp ------TTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred ------hcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 023467999999998873 1 1 12233344444667888877754
No 138
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.38 E-value=0.00072 Score=67.29 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=41.2
Q ss_pred CCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEE--Ee--cccchhhhhhccc--cccccccCCCCHHHHHHHHH
Q 003873 471 HPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIIC--IC--NDRYSQKLKSLVN--YCSDLRFRKPRKQEIAKRLM 543 (790)
Q Consensus 471 ~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~--I~--nd~~~~~l~~L~s--R~~~I~F~~pt~~ei~~iL~ 543 (790)
..+.||||||++.|...+...+..+.+.+.. ..++|+ ++ .+.....+..+.. .+..+.+..-+.+.+...|.
T Consensus 104 ~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~-~~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i~ 181 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQLFIQAVRQTLST-PGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIV 181 (189)
T ss_dssp SCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-SSCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHHH
T ss_pred cCCCEEEEeCCCccccccHHHHHHHHHHHhC-CCcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHHH
Confidence 4567999999988876665666666666554 345554 22 2322233444443 24556666656555555443
No 139
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.26 E-value=0.00063 Score=88.30 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=33.0
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSR 434 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~r 434 (790)
...++++|+||||||||++|..++.+. |..+..+++....
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence 357899999999999999998887665 7788888876543
No 140
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=97.25 E-value=0.00037 Score=70.17 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=64.9
Q ss_pred CCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCC-----CCcchHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 206 GGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDED-----IAGAKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 206 ~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~-----~g~~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
.|..||+|| |..-.|+++.++++++||.+...++.++|+||++.. ...-|+..|...|+.||+.+-+.+-+...
T Consensus 3 ~~~~~~~sg-~~~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~~~ 81 (214)
T 1t15_A 3 KRMSMVVSG-LTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKER 81 (214)
T ss_dssp -CCEEEEES-CCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHTT
T ss_pred CcEEEEECC-CCHHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHHCC
Confidence 578999999 546789999999999999999999999999999975 34688889999999999999888888764
No 141
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.25 E-value=0.0021 Score=70.64 Aligned_cols=105 Identities=18% Similarity=0.234 Sum_probs=61.1
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccC----------CCchhHHHHHHHHhhh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIG----------GSNANSIKELVSNEAL 462 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g----------~s~~~~i~e~l~~a~~ 462 (790)
....++|+||||+|||++|..+|..+ |..+++++........ ....++ ......+.+.+.....
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~---~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV---YARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH---HHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45689999999999999998887654 6788888876432221 111111 1112233333332111
Q ss_pred hccccCCCCCceEEEEecCCCCCc-c-------c-----h-----hHHHHHHHHhhcCCCcEEEEe
Q 003873 463 SANMDRSKHPKTVLIMDEVDGMSA-G-------D-----R-----GGIADLIASIKISKIPIICIC 510 (790)
Q Consensus 463 ~~~~~~~~~~~~VLIIDEiD~L~~-~-------~-----~-----~~l~~Ll~~i~~s~~pII~I~ 510 (790)
.....+||||.+..|.. . + + ..+..|....+..+++||++.
T Consensus 150 -------~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 150 -------SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp -------TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred -------cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 23457999999999873 1 0 1 122233333467788887764
No 142
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=97.23 E-value=0.0011 Score=61.99 Aligned_cols=81 Identities=11% Similarity=0.149 Sum_probs=66.7
Q ss_pred CCCCCCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHH---hCCceeCHHHHH
Q 003873 198 PEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKE---LGTPFLTEDGLF 274 (790)
Q Consensus 198 ~~~~~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~---~~i~ii~e~~f~ 274 (790)
+.-....|.|.+|+|.|. ....|+.++.+|..+||+|...++..+++||++.. ..+++++.. .+++||+.+-+.
T Consensus 34 ~~~~~~lF~g~~i~i~G~-~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~--~~~~~~~~~~~~~~~~iV~~~Wv~ 110 (132)
T 1wf6_A 34 FQAPEDLLDGCRIYLCGF-SGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDY--DDELKQFWNKSAHRPHVVGAKWLL 110 (132)
T ss_dssp CCCCTTTTTTCEEEEESC-CSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSC--CSHHHHHHHHSCCCCCEEEHHHHH
T ss_pred ccccccccCCEEEEEECC-ChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCc--hHHHHHHHHhhCCCCeEechHHHH
Confidence 444456899999999995 46799999999999999999999999999999863 356665544 379999999999
Q ss_pred HHHhhcC
Q 003873 275 DMIRASK 281 (790)
Q Consensus 275 ~~l~~~~ 281 (790)
+=|+...
T Consensus 111 dsi~~~~ 117 (132)
T 1wf6_A 111 ECFSKGY 117 (132)
T ss_dssp HHHHHSS
T ss_pred HHHHcCC
Confidence 9887653
No 143
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.23 E-value=0.0012 Score=67.16 Aligned_cols=37 Identities=30% Similarity=0.360 Sum_probs=28.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
....++|+||||+||||++..+|..+ +..+++++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 35689999999999999988776543 66777776543
No 144
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.21 E-value=0.00094 Score=67.74 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=30.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHH--h-------CCcEEEEeCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQM--L-------GFQAIEVNASD 432 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAke--l-------g~~iiEinaSd 432 (790)
....++|+||+|+||||+++.++.. + +..+++++..+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4568999999999999999999985 3 45677887655
No 145
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.19 E-value=0.0012 Score=72.11 Aligned_cols=106 Identities=19% Similarity=0.246 Sum_probs=62.3
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccC----------CCchhHHHHHHHHhhh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIG----------GSNANSIKELVSNEAL 462 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g----------~s~~~~i~e~l~~a~~ 462 (790)
....++|+||||+||||+|..+|..+ |..+++++........ ....++ ......+.+.+.....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~---~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHH---HHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45789999999999999998888654 6788888875432211 111111 1112233333332211
Q ss_pred hccccCCCCCceEEEEecCCCCCcc--------c----------hhHHHHHHHHhhcCCCcEEEEec
Q 003873 463 SANMDRSKHPKTVLIMDEVDGMSAG--------D----------RGGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 463 ~~~~~~~~~~~~VLIIDEiD~L~~~--------~----------~~~l~~Ll~~i~~s~~pII~I~n 511 (790)
.....+||||.+..+... + ...+..|...++...++||++..
T Consensus 139 -------~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq 198 (356)
T 1u94_A 139 -------SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 198 (356)
T ss_dssp -------HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred -------ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 123569999999988741 1 11233444445677888887643
No 146
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.18 E-value=0.0024 Score=69.86 Aligned_cols=38 Identities=24% Similarity=0.158 Sum_probs=31.3
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDS 433 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~ 433 (790)
....++|+||||+||||++..++..+ +..+++++....
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 35689999999999999999998765 667888877543
No 147
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.14 E-value=0.0044 Score=75.86 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=84.9
Q ss_pred ccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHH------hCCcEEEEeCC
Q 003873 358 IVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQM------LGFQAIEVNAS 431 (790)
Q Consensus 358 LvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAke------lg~~iiEinaS 431 (790)
.+|.+..+++|..||..- ...+.+.|+||.|+||||||..++.. +...++.++.+
T Consensus 130 ~VGRe~eLeeL~elL~~~-------------------d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs 190 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-------------------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-------------------CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECC
T ss_pred CCCcHHHHHHHHHHHhcc-------------------CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeC
Confidence 399999999999999750 12578999999999999999998853 24445666665
Q ss_pred CCCCchh--hhhhcc---c----CC------CchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHH
Q 003873 432 DSRGKAD--AKISKG---I----GG------SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLI 496 (790)
Q Consensus 432 d~rsk~~--~~i~~~---~----g~------s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll 496 (790)
....... ..+... + .. .....+..+........ .....++.+||||+++. .. .+
T Consensus 191 ~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL--~~l~~KRvLLVLDDVwd-----~e----qL 259 (1221)
T 1vt4_I 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL--KSKPYENCLLVLLNVQN-----AK----AW 259 (1221)
T ss_dssp CSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHH--HHSTTSSCEEEEESCCC-----HH----HH
T ss_pred CCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHH--HhhcCCCEEEEEeCcCh-----HH----HH
Confidence 4332211 011110 0 00 00111111111110000 00134567999999987 12 22
Q ss_pred HHhhcCCCcEEEEecccchhhhhhcc-ccccccccC----CCCHHHHHHHHHHHH
Q 003873 497 ASIKISKIPIICICNDRYSQKLKSLV-NYCSDLRFR----KPRKQEIAKRLMQIA 546 (790)
Q Consensus 497 ~~i~~s~~pII~I~nd~~~~~l~~L~-sR~~~I~F~----~pt~~ei~~iL~~I~ 546 (790)
+.+. ..+.||+++-+.... ..+. .+...+.+. .++.++-.+++...+
T Consensus 260 e~f~-pGSRILVTTRd~~Va--~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~ 311 (1221)
T 1vt4_I 260 NAFN-LSCKILLTTRFKQVT--DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311 (1221)
T ss_dssp HHHH-SSCCEEEECSCSHHH--HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH
T ss_pred HhhC-CCeEEEEeccChHHH--HhcCCCeEEEecCccccCCcCHHHHHHHHHHHc
Confidence 2222 566777777653321 1111 112233333 789999888887663
No 148
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=97.14 E-value=0.0012 Score=69.18 Aligned_cols=80 Identities=14% Similarity=0.237 Sum_probs=65.7
Q ss_pred CCCCCCCCCCcEEEE-EecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhC-CceeCHHHHHH
Q 003873 198 PEGAPDCLGGLTFVI-SGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELG-TPFLTEDGLFD 275 (790)
Q Consensus 198 ~~~~~~~l~g~~~v~-TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~-i~ii~e~~f~~ 275 (790)
+....+.|.|+.||+ +| ....+|++++.+|.++||+|..+.+..|.++|++... -|.+.|.+.| ++||..+-+++
T Consensus 4 ~~~~s~lF~G~~f~V~sg-~~~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~~~--~k~~~~~~~g~~~IV~p~Wv~D 80 (263)
T 3ii6_X 4 GSKISNIFEDVEFCVMSG-TDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSEN--IRVKNIILSNKHDVVKPAWLLE 80 (263)
T ss_dssp --CCCCTTTTCEEEECCC-C--CCHHHHHHHHHHTTCEECSSCCTTEEEEECSSCC--HHHHHHHHSCSCCEECHHHHHH
T ss_pred CCcCcccCCCeEEEEEcC-CCCCCHHHHHHHHHHcCCEEEecCCCCEEEEEeCCCC--HHHHHHHhcCCCCEeehHHHHH
Confidence 334566899999998 56 4568999999999999999999999888888887543 7888888887 99999999999
Q ss_pred HHhhc
Q 003873 276 MIRAS 280 (790)
Q Consensus 276 ~l~~~ 280 (790)
-+...
T Consensus 81 ci~~~ 85 (263)
T 3ii6_X 81 CFKTK 85 (263)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 98764
No 149
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.14 E-value=0.00081 Score=67.09 Aligned_cols=101 Identities=15% Similarity=0.165 Sum_probs=56.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCC-CCCCchhhhhhcccCCC----chhHHHHHHHHhhhhccccC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNAS-DSRGKADAKISKGIGGS----NANSIKELVSNEALSANMDR 468 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaS-d~rsk~~~~i~~~~g~s----~~~~i~e~l~~a~~~~~~~~ 468 (790)
.+..+++||.|+||||++.-++..+ |..++-+.+. +.|... ..+...++.. ......+++...
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~-~~i~s~~g~~~~a~~~~~~~~i~~~~-------- 78 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSK-EDVVSHMGEKEQAVAIKNSREILKYF-------- 78 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--------CEEECTTSCEEECEEESSSTHHHHHC--------
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchH-HHHHhhcCCceeeEeeCCHHHHHHHH--------
Confidence 4689999999999999998777665 7777777543 333221 1121111110 011112333321
Q ss_pred CCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEec
Q 003873 469 SKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 469 ~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~n 511 (790)
.....+|+|||+..+.... ..++..+....++|||++-
T Consensus 79 -~~~~dvViIDEaqfl~~~~----v~~l~~l~~~~~~Vi~~Gl 116 (191)
T 1xx6_A 79 -EEDTEVIAIDEVQFFDDEI----VEIVNKIAESGRRVICAGL 116 (191)
T ss_dssp -CTTCSEEEECSGGGSCTHH----HHHHHHHHHTTCEEEEEEC
T ss_pred -hccCCEEEEECCCCCCHHH----HHHHHHHHhCCCEEEEEec
Confidence 1235799999999986432 2334443344789999865
No 150
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.12 E-value=0.00026 Score=69.13 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=29.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
.+.++|+||+|+||||+++.||+.+|+.++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 468999999999999999999999999887653
No 151
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.11 E-value=0.00039 Score=67.33 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=28.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
+..++|+|+||+||||+++.|++.++..++.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~ 35 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEec
Confidence 367999999999999999999999988776543
No 152
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.07 E-value=0.0017 Score=64.43 Aligned_cols=129 Identities=15% Similarity=0.132 Sum_probs=64.2
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhh--hcccCCCchhHHHHHHHHhhhhccccCCCCCceE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKI--SKGIGGSNANSIKELVSNEALSANMDRSKHPKTV 475 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i--~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~V 475 (790)
+.|+|+||+|+||||+++.|.+++.-.+...-...+|....... ..+.. .....|...+... ..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~F-vs~~eF~~~i~~g-------------~f 67 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNF-VSVDEFKSMIKNN-------------EF 67 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEE-CCHHHHHHHHHTT-------------CE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEe-ecHHHHHHHHHcC-------------CE
Confidence 57999999999999999999988743332211111222110000 00000 1234455555431 24
Q ss_pred EEEecCCCCCc-cchhHHHHHHHHhhcCCCcEEEEecccchhhhhhccc-cccccccCCCCHHHHHHHHHH
Q 003873 476 LIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN-YCSDLRFRKPRKQEIAKRLMQ 544 (790)
Q Consensus 476 LIIDEiD~L~~-~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l~~L~s-R~~~I~F~~pt~~ei~~iL~~ 544 (790)
|---++++... .....+...++ . ...+|+-..-.....++.... .+..|.+.||+.+.+.++|..
T Consensus 68 lE~~~~~g~~YGt~~~~v~~~l~---~-g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~ 134 (186)
T 1ex7_A 68 IEWAQFSGNYYGSTVASVKQVSK---S-GKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEG 134 (186)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHH---H-TSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHH
T ss_pred EEEEEEcCceeeeecceeeehhh---C-CCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHh
Confidence 44455554433 23344444443 2 233444333222222333222 344466778898888888764
No 153
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.06 E-value=0.0018 Score=67.82 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....++|+||+|+||||++..++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998654
No 154
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.06 E-value=0.00044 Score=69.07 Aligned_cols=96 Identities=11% Similarity=0.136 Sum_probs=57.3
Q ss_pred CCcEEEEECCCCCChH-HHHHHHHHHh--CCcEEEEeCC-CCCCchhhhhhcccC-------CCchhHHHHHHHHhhhhc
Q 003873 396 AEKAAILSGSPGMGKT-TAAKLVCQML--GFQAIEVNAS-DSRGKADAKISKGIG-------GSNANSIKELVSNEALSA 464 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKT-TlA~~lAkel--g~~iiEinaS-d~rsk~~~~i~~~~g-------~s~~~~i~e~l~~a~~~~ 464 (790)
..+.++++||.|+||| .|++++.+.. +..++.+.+. |.|... . +...+| ......+.+..
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~-~-i~S~~g~~~~A~~~~~~~d~~~~~------- 89 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSS-S-FCTHDRNTMEALPACLLRDVAQEA------- 89 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGG-S-CCHHHHHHSEEEEESSGGGGHHHH-------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchh-h-hhhccCCcccceecCCHHHHHHhc-------
Confidence 4578999999999999 7778886644 7788888765 444221 1 111110 01111222211
Q ss_pred cccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEec
Q 003873 465 NMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 465 ~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~n 511 (790)
....||+|||+..+ .+ +.++++.+-....+|||.+=
T Consensus 90 ------~~~DvIlIDEaQFf-k~----~ve~~~~L~~~gk~VI~~GL 125 (195)
T 1w4r_A 90 ------LGVAVIGIDEGQFF-PD----IVEFCEAMANAGKTVIVAAL 125 (195)
T ss_dssp ------HTCSEEEESSGGGC-TT----HHHHHHHHHHTTCEEEEEEE
T ss_pred ------cCCCEEEEEchhhh-HH----HHHHHHHHHHCCCeEEEEec
Confidence 12359999999999 43 33344444456789998753
No 155
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.05 E-value=0.00087 Score=68.24 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=26.5
Q ss_pred CCcEEEEECCCCCChHHHHHHHH--HH--hCCcEEEEeC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVC--QM--LGFQAIEVNA 430 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lA--ke--lg~~iiEina 430 (790)
....+.|.||+|+||||+++.++ .. .+...+.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 45789999999999999999998 32 2445555544
No 156
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.04 E-value=0.003 Score=63.61 Aligned_cols=29 Identities=38% Similarity=0.588 Sum_probs=26.2
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
.++|.||||+||+|.|+.||+.+|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 47899999999999999999999987665
No 157
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.03 E-value=0.00041 Score=66.42 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=28.3
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
..++|+||+|+||||+++.|++.+++.++..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 36899999999999999999999998876643
No 158
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=97.03 E-value=0.00075 Score=68.04 Aligned_cols=73 Identities=15% Similarity=0.075 Sum_probs=64.1
Q ss_pred CcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCC--CCcchHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 207 GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDED--IAGAKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 207 g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~--~g~~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
|..||+|| |..-.|+++.++++.+||.+...++.++|+||++.+ ...-|+-.|...|+.|++.+-+.+-+...
T Consensus 2 ~~vi~~sg-~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~ 76 (210)
T 2nte_A 2 PLVLIGSG-LSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRK 76 (210)
T ss_dssp CCEEEESS-CCHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHT
T ss_pred CEEEEECC-CCHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHcC
Confidence 67899999 545789999999999999999999999999999873 55688889999999999999888887654
No 159
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.03 E-value=0.00097 Score=77.59 Aligned_cols=107 Identities=22% Similarity=0.387 Sum_probs=58.1
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCCCchhHHHHHHHHhhhhcc-ccCCCCCc
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN-MDRSKHPK 473 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~s~~~~i~e~l~~a~~~~~-~~~~~~~~ 473 (790)
+.++|+|||||||||++..++..+ +..++-+.++. +....+...++. ....+..++........ ........
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~---~Aa~~L~e~~~~-~a~Tih~ll~~~~~~~~~~~~~~~~~ 280 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTG---KAARRLGEVTGR-TASTVHRLLGYGPQGFRHNHLEPAPY 280 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH---HHHHHHHHHHTS-CEEEHHHHTTEETTEESCSSSSCCSC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcH---HHHHHhHhhhcc-cHHHHHHHHcCCcchhhhhhcccccC
Confidence 689999999999999999998755 66766554432 111111111111 11123333321110000 00112345
Q ss_pred eEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 474 TVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 474 ~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
.+|||||+..+... .+..|+..+. ....+|++...
T Consensus 281 dvlIIDEasml~~~---~~~~Ll~~~~-~~~~lilvGD~ 315 (574)
T 3e1s_A 281 DLLIVDEVSMMGDA---LMLSLLAAVP-PGARVLLVGDT 315 (574)
T ss_dssp SEEEECCGGGCCHH---HHHHHHTTSC-TTCEEEEEECT
T ss_pred CEEEEcCccCCCHH---HHHHHHHhCc-CCCEEEEEecc
Confidence 79999999987643 4445555443 45567777764
No 160
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.99 E-value=0.0035 Score=64.30 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=28.6
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEEeCC
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaS 431 (790)
.+||+||+|+|||.++.+++..++..++.+.+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 499999999999999999999888777777654
No 161
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.97 E-value=0.00046 Score=68.63 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=30.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
....++|.||+||||||+++.||+.+|+.++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3568999999999999999999999999887653
No 162
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.97 E-value=0.0055 Score=66.95 Aligned_cols=101 Identities=10% Similarity=0.194 Sum_probs=54.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh----CCcEEEEeCC-CCCCch-hhhhhc-ccCCCchhHHHHHHHHhhhhccccCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML----GFQAIEVNAS-DSRGKA-DAKISK-GIGGSNANSIKELVSNEALSANMDRS 469 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel----g~~iiEinaS-d~rsk~-~~~i~~-~~g~s~~~~i~e~l~~a~~~~~~~~~ 469 (790)
...++|+||+|+||||++++++..+ +..++.+... ...... ...+.. .++. ....+.+.+..+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~-~~~~~~~~La~aL-------- 193 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHR-DTLGFSEALRSAL-------- 193 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTT-TBSCHHHHHHHHT--------
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeecc-ccCCHHHHHHHHh--------
Confidence 3589999999999999999998876 3344443221 111000 000111 1111 1123445555443
Q ss_pred CCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 470 KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 470 ~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
...+.+|++||+- +...+..+++.. .+...+|+++-+
T Consensus 194 ~~~PdvillDEp~-----d~e~~~~~~~~~-~~G~~vl~t~H~ 230 (356)
T 3jvv_A 194 REDPDIILVGEMR-----DLETIRLALTAA-ETGHLVFGTLHT 230 (356)
T ss_dssp TSCCSEEEESCCC-----SHHHHHHHHHHH-HTTCEEEEEESC
T ss_pred hhCcCEEecCCCC-----CHHHHHHHHHHH-hcCCEEEEEEcc
Confidence 3456799999995 344444444443 345556666544
No 163
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.91 E-value=0.0019 Score=70.20 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=31.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---------CCcEEEEeCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---------GFQAIEVNASDS 433 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---------g~~iiEinaSd~ 433 (790)
....++|+||||+|||+++..+|... +..+++++....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 45689999999999999999998862 567888877653
No 164
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.89 E-value=0.0033 Score=66.31 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=28.5
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh----CCcEEEEeCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML----GFQAIEVNAS 431 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel----g~~iiEinaS 431 (790)
....++|.||||+||||+++.+|..+ |..++.++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 45689999999999999999998765 5466666543
No 165
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.87 E-value=0.0023 Score=63.93 Aligned_cols=116 Identities=15% Similarity=0.072 Sum_probs=62.3
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCC--CCchhhhhhcccC------------CCc-----hhHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDS--RGKADAKISKGIG------------GSN-----ANSIK 454 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~--rsk~~~~i~~~~g------------~s~-----~~~i~ 454 (790)
...+++++++|.||||+|-.+|-.. |+.+..+..... .......+.. ++ ... .....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~-L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEP-HGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGG-GTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHh-CCcEEEEcccccccCCCCcHHHHHHHH
Confidence 3578899999999999998887544 888877743321 1111111111 11 010 01122
Q ss_pred HHHHHhhhhccccCCCCCceEEEEecCCCCCc---cchhHHHHHHHHhhcCCCcEEEEecccchhhh
Q 003873 455 ELVSNEALSANMDRSKHPKTVLIMDEVDGMSA---GDRGGIADLIASIKISKIPIICICNDRYSQKL 518 (790)
Q Consensus 455 e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~---~~~~~l~~Ll~~i~~s~~pII~I~nd~~~~~l 518 (790)
..+..+.... ....+.+|||||+..+.. -+...+..++.. +....-||++++.....++
T Consensus 107 ~~l~~a~~~l----~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 107 AVWQHGKRML----ADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp HHHHHHHHHT----TCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHH
T ss_pred HHHHHHHHHH----hcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHH
Confidence 2222222111 135678999999954321 122334444442 3455678888887655444
No 166
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.87 E-value=0.0015 Score=70.34 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=31.5
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---------CCcEEEEeCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---------GFQAIEVNASDS 433 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---------g~~iiEinaSd~ 433 (790)
....++|+||||+|||+++..+|... +..+++++....
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 45789999999999999999998775 567888877653
No 167
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=96.86 E-value=0.0017 Score=65.56 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=60.2
Q ss_pred CCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 204 CLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 204 ~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
.+.|..|||||.. -++.+.+|+.+||.+...+++ +++||++.-...-|+-.|...|++||+.+-+.+-+...
T Consensus 9 ~~~~~~v~~sG~~----~~~~~~~i~~lGg~~~~~~~~-~THlI~~~~~rt~K~l~a~~~g~~IV~~~Wl~~~~~~~ 80 (209)
T 2etx_A 9 ESTAPKVLFTGVV----DARGERAVLALGGSLAGSAAE-ASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAG 80 (209)
T ss_dssp ---CCEEEECSSC----CHHHHHHHHHTTCEECSSTTT-CSEEECSSCCCSHHHHHHHHHTCCEECTHHHHHHHHHT
T ss_pred cCCCcEEEEeCCC----cHHHHHHHHHCCCEEeCCCCC-ceEEEECCCCCCHHHHHHHhcCCccccHHHHHHHHHcC
Confidence 4778999999944 256799999999999999985 99999997656689999999999999999998888764
No 168
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.85 E-value=0.003 Score=68.79 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=30.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---------CCcEEEEeCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---------GFQAIEVNASD 432 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---------g~~iiEinaSd 432 (790)
....+.|+||+|+||||+++.++..+ +-.+++++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 45789999999999999999999876 24567887654
No 169
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.84 E-value=0.00083 Score=64.57 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=28.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
..+++|+|++|+||||+++.||+.+|+.++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 46899999999999999999999999988764
No 170
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.84 E-value=0.0006 Score=66.36 Aligned_cols=32 Identities=38% Similarity=0.598 Sum_probs=28.5
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.+.++|+|+||+||||+++.|++.+++.++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 46799999999999999999999999877654
No 171
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.84 E-value=0.00084 Score=65.67 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=28.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
+..++|+|+||+||||+++.|++.+|+.++..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 46899999999999999999999999877653
No 172
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.83 E-value=0.0008 Score=64.76 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=27.0
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
..++|+||+|+||||+++.|+..+++.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 579999999999999999999999986654
No 173
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.83 E-value=0.00077 Score=65.34 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=27.8
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
+.++|.||||+||||+++.||+.+++.++..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 3689999999999999999999999887754
No 174
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.81 E-value=0.0025 Score=63.87 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=28.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---------CCcEEEEeCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---------GFQAIEVNASD 432 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---------g~~iiEinaSd 432 (790)
....+.|.||+|+||||+++.++..+ +...+.++..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 35689999999999999999999854 22366776544
No 175
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.80 E-value=0.00062 Score=66.42 Aligned_cols=32 Identities=31% Similarity=0.606 Sum_probs=28.5
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
..++|+|+||+||||+++.|++.+|+.++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 45899999999999999999999999887643
No 176
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.75 E-value=0.00076 Score=66.21 Aligned_cols=33 Identities=36% Similarity=0.673 Sum_probs=28.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHH-hCCcEEEE
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQM-LGFQAIEV 428 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAke-lg~~iiEi 428 (790)
....++|+|++|+||||+++.|++. +|+.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 3468999999999999999999999 78777654
No 177
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.74 E-value=0.001 Score=63.30 Aligned_cols=30 Identities=37% Similarity=0.609 Sum_probs=27.0
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
..++|+||||+||||+++.| +.+|+.++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 46899999999999999999 9999987764
No 178
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.70 E-value=0.001 Score=69.04 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=29.0
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEEeC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEina 430 (790)
+.++|+||+|+||||+|+.||+.+++.++..+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 368999999999999999999999988876543
No 179
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.70 E-value=0.0029 Score=64.15 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=55.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCC-CCCCchhhhhhcccCCCc----hhHHHHHHHHhhhhcccc
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNAS-DSRGKADAKISKGIGGSN----ANSIKELVSNEALSANMD 467 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaS-d~rsk~~~~i~~~~g~s~----~~~i~e~l~~a~~~~~~~ 467 (790)
.....+++||.|+||||.+.-++..+ |..++-+.+. |.|.... .+...++... .....+++..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~-~i~s~~g~~~~a~~~~~~~~~~~~-------- 97 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEE-DVVSHNGLKVKAVPVSASKDIFKH-------- 97 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGG--------
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHH-HHHhhcCCeeEEeecCCHHHHHHH--------
Confidence 34678899999999999987776554 7788777654 3332111 1111111000 0000111111
Q ss_pred CCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEec
Q 003873 468 RSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 468 ~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~n 511 (790)
......+|+|||+..+..+. + +++..+....++|||..-
T Consensus 98 -~~~~~dvViIDEaQF~~~~~---V-~~l~~l~~~~~~Vi~~Gl 136 (214)
T 2j9r_A 98 -ITEEMDVIAIDEVQFFDGDI---V-EVVQVLANRGYRVIVAGL 136 (214)
T ss_dssp -CCSSCCEEEECCGGGSCTTH---H-HHHHHHHHTTCEEEEEEC
T ss_pred -HhcCCCEEEEECcccCCHHH---H-HHHHHHhhCCCEEEEEec
Confidence 01235799999999986543 2 444443445889999875
No 180
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.70 E-value=0.0014 Score=64.95 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=29.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.+..++|+|+||+||||+++.|++.+|+.++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 456899999999999999999999999887765
No 181
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.69 E-value=0.0011 Score=63.63 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=27.9
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
+.++|+|++|+||||+++.|++.+|+.++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 4689999999999999999999999887653
No 182
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.68 E-value=0.0036 Score=80.40 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=49.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhh-----hhhcccCC---CchhHHHHHHHHhhhhc
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADA-----KISKGIGG---SNANSIKELVSNEALSA 464 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~-----~i~~~~g~---s~~~~i~e~l~~a~~~~ 464 (790)
..+.+|||||||||||++|++++.+. |-..+.+.....-..... .+...++. .....++.++..+.
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar--- 1157 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR--- 1157 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH---
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHH---
Confidence 45669999999999999999998766 455566655432211100 01112211 01223444443332
Q ss_pred cccCCCCCceEEEEecCCCCCcc
Q 003873 465 NMDRSKHPKTVLIMDEVDGMSAG 487 (790)
Q Consensus 465 ~~~~~~~~~~VLIIDEiD~L~~~ 487 (790)
+...++|++||++.|...
T Consensus 1158 -----~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1158 -----SGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp -----HTCCSEEEESCGGGCCCH
T ss_pred -----hcCCeEEEeCchHhcCcc
Confidence 244679999999977663
No 183
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.68 E-value=0.0012 Score=65.64 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=28.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
...++|+|++|+||||+++.|++.+|+.++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 46899999999999999999999999877654
No 184
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=96.68 E-value=0.0022 Score=64.36 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=64.7
Q ss_pred CCcEEEEEecCCCCCHHHHHHHHHHcCC-EecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 206 GGLTFVISGTLDSLEREEAEDLIKRHGG-RVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 206 ~g~~~v~TG~l~~~~R~~~~~~i~~~Gg-~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
..++||+|| |+.-+|+++..+++.+|| .++..++..||+||++.....-|+-.|...|+.|++.+-+.+-+..+
T Consensus 10 ~~~~~~~sg-l~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~g 84 (199)
T 3u3z_A 10 PTRTLVMTS-MPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELG 84 (199)
T ss_dssp CCCEEEEES-CCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHHHHHHHT
T ss_pred CCeEEEEcC-CCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHHCCCcEEeHHHHHHHhhCC
Confidence 356999999 656789999999999977 78899999999999998766789999999999999998888877654
No 185
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.67 E-value=0.0077 Score=67.84 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=29.8
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHh----CCcEEEEeCCC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQML----GFQAIEVNASD 432 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkel----g~~iiEinaSd 432 (790)
.....++|.|+||+||||++..+|..+ |..++.++...
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 345689999999999999998887654 55777776543
No 186
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.67 E-value=0.0013 Score=64.36 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=28.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
...++|+|+||+||||+++.|++.+|+.++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 46899999999999999999999999877654
No 187
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=96.65 E-value=0.0029 Score=65.10 Aligned_cols=75 Identities=20% Similarity=0.188 Sum_probs=64.2
Q ss_pred CCCcEEEEEecCCCCCHHHHHHHHHHcCCEecc--cccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTG--SVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 205 l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~--~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
..+.+|+||| |..-.|+++.++|+.+||.|.. .++.++|+||++...-+-|+-.|...|..||+.+-+.+-+..+
T Consensus 7 ~~~~~~~~Sg-~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~~g 83 (235)
T 3al2_A 7 KKQYIFQLSS-LNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAG 83 (235)
T ss_dssp -CCCEEEEES-CCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHHHT
T ss_pred CCCEEEEEcC-CCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHHHcC
Confidence 3678999999 4456899999999999999976 5889999999998665689999999999999998887777654
No 188
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.65 E-value=0.0013 Score=64.07 Aligned_cols=32 Identities=22% Similarity=0.471 Sum_probs=28.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
+..++|+|+||+||||+++.|++.+|+.++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 35799999999999999999999999877653
No 189
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.64 E-value=0.014 Score=62.49 Aligned_cols=105 Identities=14% Similarity=0.200 Sum_probs=59.7
Q ss_pred EEEEECCCCCChHHHHHHHHHHh-----CCcEEEEeCCCCCCchhhhhhcccC----------CCchhHH-HHHHHHhhh
Q 003873 399 AAILSGSPGMGKTTAAKLVCQML-----GFQAIEVNASDSRGKADAKISKGIG----------GSNANSI-KELVSNEAL 462 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkel-----g~~iiEinaSd~rsk~~~~i~~~~g----------~s~~~~i-~e~l~~a~~ 462 (790)
.++|+||||+||||++..++..+ |..++++++....... .. ..+| ......+ .+++.....
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~--ra-~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~ 106 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA--YL-RSMGVDPERVIHTPVQSLEQLRIDMVNQLDA 106 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH--HH-HHTTCCGGGEEEEECSBHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH--HH-HHhCCCHHHeEEEcCCCHHHHHHHHHHHHHH
Confidence 68999999999999987665443 5678888875432211 11 1111 1112222 222222100
Q ss_pred hccccCCCCCceEEEEecCCCCCcc--------c-------h-----hHHHHHHHHhhcCCCcEEEEec
Q 003873 463 SANMDRSKHPKTVLIMDEVDGMSAG--------D-------R-----GGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 463 ~~~~~~~~~~~~VLIIDEiD~L~~~--------~-------~-----~~l~~Ll~~i~~s~~pII~I~n 511 (790)
. ......+||||=|..|... + + ..+..|...++..++++|+|.-
T Consensus 107 ---i--~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQ 170 (333)
T 3io5_A 107 ---I--ERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINH 170 (333)
T ss_dssp ---C--CTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ---h--hccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECC
Confidence 0 1345789999999998631 1 1 1234455556778888887653
No 190
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.63 E-value=0.0012 Score=64.26 Aligned_cols=31 Identities=42% Similarity=0.693 Sum_probs=27.3
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
..++|+|+||+||||+++.|++.+|+.++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 5799999999999999999999999876543
No 191
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.62 E-value=0.021 Score=63.99 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=33.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRG 435 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rs 435 (790)
.+..++|+|++|+||||++..||..+ |..+.-+.+...|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 46899999999999999999998776 77887777655554
No 192
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.61 E-value=0.0011 Score=64.39 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=23.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~ii 426 (790)
+..++|+|+||+||||+++.|++.+++.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 468999999999999999999999998876
No 193
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.60 E-value=0.0013 Score=64.08 Aligned_cols=30 Identities=30% Similarity=0.675 Sum_probs=26.7
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhC-----CcEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLG-----FQAIE 427 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg-----~~iiE 427 (790)
..++|+||||+||||+++.|++.++ +.++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 5799999999999999999999997 66654
No 194
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.60 E-value=0.0015 Score=66.45 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=29.0
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
..++.++|.||||+||+|.|+.||+.+|+..+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 356789999999999999999999999987654
No 195
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.59 E-value=0.00098 Score=64.26 Aligned_cols=30 Identities=37% Similarity=0.491 Sum_probs=25.1
Q ss_pred cEEEEECCCCCChHHHHHHHHH-HhCCcEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQ-MLGFQAIE 427 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAk-elg~~iiE 427 (790)
..++|+||||+||||+++.|++ .+++.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 5789999999999999999998 56655443
No 196
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.58 E-value=0.0015 Score=64.14 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=28.5
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
+..++|+|+||+||||+++.|++.+|+.++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 46899999999999999999999999877654
No 197
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.58 E-value=0.015 Score=62.88 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=53.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCC--cEEEEeCCCCCCc--hhhhhhcccCCCchhHHHHHHHHhhhhccccCCCCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGF--QAIEVNASDSRGK--ADAKISKGIGGSNANSIKELVSNEALSANMDRSKHP 472 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~--~iiEinaSd~rsk--~~~~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~ 472 (790)
...++|.||+|+||||++++++..+.. ..+.++....... ....+ ..+.+ .....+..+..+. ...
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i-~~~~g-gg~~~r~~la~aL--------~~~ 240 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYT-QLFFG-GNITSADCLKSCL--------RMR 240 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEE-EEECB-TTBCHHHHHHHHT--------TSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEE-EEEeC-CChhHHHHHHHHh--------hhC
Confidence 368999999999999999999987742 3455543321110 00001 01100 0112333444432 235
Q ss_pred ceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEec
Q 003873 473 KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 473 ~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~n 511 (790)
+.+||+||+-. ..+..++..+......+|+++.
T Consensus 241 p~ilildE~~~------~e~~~~l~~~~~g~~tvi~t~H 273 (330)
T 2pt7_A 241 PDRIILGELRS------SEAYDFYNVLCSGHKGTLTTLH 273 (330)
T ss_dssp CSEEEECCCCS------THHHHHHHHHHTTCCCEEEEEE
T ss_pred CCEEEEcCCCh------HHHHHHHHHHhcCCCEEEEEEc
Confidence 67999999875 1234455555443334666554
No 198
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.57 E-value=0.0017 Score=63.21 Aligned_cols=32 Identities=22% Similarity=0.456 Sum_probs=28.5
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
+..++|+|+||+||||+++.|++.+|+.++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 46899999999999999999999999877654
No 199
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.56 E-value=0.0017 Score=65.32 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=28.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
...++|.|+||+||||+++.||+.+++.++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 46799999999999999999999999877654
No 200
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.56 E-value=0.0063 Score=67.54 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=28.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---------CCcEEEEeCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---------GFQAIEVNASD 432 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---------g~~iiEinaSd 432 (790)
....++|+||||+||||+++.+|-.. +..+++++..+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 45789999999999999999776433 24477887655
No 201
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=96.56 E-value=0.0033 Score=63.92 Aligned_cols=78 Identities=13% Similarity=0.192 Sum_probs=54.7
Q ss_pred CCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEeccccccc------ccEEEecCCC--CcchHHH-HHHhCCceeCHHHH
Q 003873 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKK------TNYLLCDEDI--AGAKSTK-AKELGTPFLTEDGL 273 (790)
Q Consensus 203 ~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~k------t~~lv~G~~~--g~~K~~k-A~~~~i~ii~e~~f 273 (790)
..|.|.+|+|+|.+....|++++.+|+..||+|....+.. +.++|++... ...+++. |...+++||+.+-+
T Consensus 116 ~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~Wl 195 (229)
T 1l0b_A 116 KLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWV 195 (229)
T ss_dssp -CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETHHH
T ss_pred hhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHH
Confidence 4799999999999888899999999999999999999774 4567777543 2244443 35679999999999
Q ss_pred HHHHhhc
Q 003873 274 FDMIRAS 280 (790)
Q Consensus 274 ~~~l~~~ 280 (790)
++-|...
T Consensus 196 ldsI~~~ 202 (229)
T 1l0b_A 196 LDSISVY 202 (229)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 9999765
No 202
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.53 E-value=0.0021 Score=61.98 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=27.3
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
...++|+||+|+||||+++.|+..+|+.++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4689999999999999999999999876554
No 203
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.53 E-value=0.024 Score=63.40 Aligned_cols=39 Identities=31% Similarity=0.328 Sum_probs=31.9
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSR 434 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~r 434 (790)
.+..++|+||+|+||||++..||..+ |..+.-+.+...|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 46889999999999999999998766 7777777665444
No 204
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.52 E-value=0.0019 Score=63.98 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=29.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
....++|+|++|+||||+++.|++.+|+.++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 456899999999999999999999999877664
No 205
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.49 E-value=0.0021 Score=61.44 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=27.4
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.++|+|++|+||||+++.|++.+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 589999999999999999999999888764
No 206
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.49 E-value=0.0022 Score=63.74 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=27.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
....++|.||+|+||||++++|+..+|+.++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 35789999999999999999999999865544
No 207
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.48 E-value=0.0018 Score=64.79 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=27.1
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.++|+||||+||||+++.|++.+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999999887765
No 208
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.48 E-value=0.0019 Score=65.03 Aligned_cols=32 Identities=28% Similarity=0.543 Sum_probs=28.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
...++|.|+||+||||+++.||+.+|+.++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35789999999999999999999999887765
No 209
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.47 E-value=0.0085 Score=77.05 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=64.0
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccC----------CCchhHHHHHHHHhh
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIG----------GSNANSIKELVSNEA 461 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g----------~s~~~~i~e~l~~a~ 461 (790)
.....++|+||||+||||+|..+|..+ +..+++++........ ....++ ......+.+.+....
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql---~A~~lGvd~~~L~i~~~~~leei~~~l~~lv 806 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDTGEQALEICDALA 806 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH---HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHH---HHHHcCCChhheEEecCCcHHHHHHHHHHHH
Confidence 456789999999999999999998765 5678888766543221 111111 112223333333211
Q ss_pred hhccccCCCCCceEEEEecCCCCCc-c-------c-----h-h----HHHHHHHHhhcCCCcEEEEe
Q 003873 462 LSANMDRSKHPKTVLIMDEVDGMSA-G-------D-----R-G----GIADLIASIKISKIPIICIC 510 (790)
Q Consensus 462 ~~~~~~~~~~~~~VLIIDEiD~L~~-~-------~-----~-~----~l~~Ll~~i~~s~~pII~I~ 510 (790)
. .....+||||.+..|.. . + + . .+..|....+...++||++.
T Consensus 807 ~-------~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlin 866 (1706)
T 3cmw_A 807 R-------SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 866 (1706)
T ss_dssp H-------HTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred H-------ccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 1 13457999999999873 1 1 1 1 13344444577788988874
No 210
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.47 E-value=0.0039 Score=65.97 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=28.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEina 430 (790)
.+..++|+||||+||||+++.|++.++..++.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 45789999999999999999999998434455554
No 211
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.47 E-value=0.002 Score=64.52 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=27.1
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.++|+||||+||||+++.|++.+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999999887754
No 212
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.43 E-value=0.002 Score=65.34 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=28.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
...++|.|+||+||||+++.|++.+|+.++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 46799999999999999999999999877754
No 213
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.43 E-value=0.024 Score=60.25 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=30.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh----CCcEEEEeCCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML----GFQAIEVNASDSR 434 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel----g~~iiEinaSd~r 434 (790)
....++|.||+|+||||++..||..+ |..+..+.+...+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 35789999999999999999998655 6677777665444
No 214
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.41 E-value=0.0048 Score=64.41 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
...++|+||+|+||||++++++..+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC
Confidence 4689999999999999999999876
No 215
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.41 E-value=0.0028 Score=61.57 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=30.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNA 430 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEina 430 (790)
...++|+|++|+||||+++.|+..+ |+.++.++.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 4678999999999999999999988 988887764
No 216
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.41 E-value=0.0044 Score=66.33 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
....++|+||||+|||+++..+|..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998875
No 217
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.38 E-value=0.0077 Score=61.68 Aligned_cols=100 Identities=13% Similarity=0.162 Sum_probs=57.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCC-CCCCchhhhhhcccCCCc----hhHHHHHHHHhhhhcccc
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNAS-DSRGKADAKISKGIGGSN----ANSIKELVSNEALSANMD 467 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaS-d~rsk~~~~i~~~~g~s~----~~~i~e~l~~a~~~~~~~ 467 (790)
.....+++||.|+||||.+--++..+ |..++-+.+. |.|.. . .+...+|... .....+++...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~-~i~sr~G~~~~a~~i~~~~di~~~~------- 88 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-S-SFCTHDRNTMEALPACLLRDVAQEA------- 88 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-------------CEEEEESSGGGGHHHH-------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-H-HHHhhcCCeeEEEecCCHHHHHHHh-------
Confidence 35788999999999998775554433 6677776643 33422 1 1211111100 00011122211
Q ss_pred CCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 468 RSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 468 ~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
....+|+|||+..+.. +.++++.+....++|||.+-+
T Consensus 89 ---~~~dvViIDEaQF~~~-----v~el~~~l~~~gi~VI~~GL~ 125 (234)
T 2orv_A 89 ---LGVAVIGIDEGQFFPD-----IVEFCEAMANAGKTVIVAALD 125 (234)
T ss_dssp ---TTCSEEEESSGGGCTT-----HHHHHHHHHHTTCEEEEECCS
T ss_pred ---ccCCEEEEEchhhhhh-----HHHHHHHHHhCCCEEEEEecc
Confidence 2356999999998852 667777777788899998754
No 218
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.35 E-value=0.0028 Score=64.56 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=28.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
...++|.|+||+||||+++.||+.+++.++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 46799999999999999999999999877664
No 219
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.35 E-value=0.00092 Score=72.82 Aligned_cols=36 Identities=33% Similarity=0.513 Sum_probs=31.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASD 432 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd 432 (790)
...++|.||+|+||||++++||+.+++.++++++++
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~ 59 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEH 59 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccc
Confidence 457999999999999999999999998887766543
No 220
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.35 E-value=0.022 Score=63.43 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=28.5
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
..+..++|+|+||+||||+++.|++.+++.++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 346789999999999999999999999876544
No 221
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.34 E-value=0.0027 Score=65.32 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=29.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.+..++|+||||+||||+++.|++.+|+.++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 356899999999999999999999999877654
No 222
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.33 E-value=0.0028 Score=63.74 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=27.0
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
..+.|.||+|+||||+++.|++.+|+.++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 578999999999999999999999987654
No 223
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.33 E-value=0.0086 Score=77.95 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=33.8
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRG 435 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rs 435 (790)
....++||+||||||||++|..++.+. |..++++++.....
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~ 1122 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 1122 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHH
Confidence 467889999999999999999887544 78899998876543
No 224
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.33 E-value=0.0043 Score=64.17 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=31.1
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDS 433 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~ 433 (790)
.+..++|+||||+||||+++.|++.++..++.++....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 45789999999999999999999999865566655443
No 225
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.33 E-value=0.015 Score=62.22 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=28.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNAS 431 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaS 431 (790)
....++|.|+||+|||+++..+|... |..++.+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 45689999999999999999888654 4567777654
No 226
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.31 E-value=0.002 Score=63.03 Aligned_cols=34 Identities=29% Similarity=0.560 Sum_probs=28.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEina 430 (790)
...++|.||+|+||||+++.|+..++...+.++.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 4689999999999999999999887666666654
No 227
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.30 E-value=0.002 Score=64.89 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=27.3
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
+..++|.||||+||||+++.||+.+++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4679999999999999999999999976544
No 228
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.28 E-value=0.011 Score=66.25 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=29.1
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh----CCcEEEEeCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML----GFQAIEVNASD 432 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel----g~~iiEinaSd 432 (790)
....++|.|+||+|||+++..+|... |..++.++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 45689999999999999998887643 56777776543
No 229
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.28 E-value=0.0035 Score=61.08 Aligned_cols=32 Identities=31% Similarity=0.391 Sum_probs=28.6
Q ss_pred EEEEECCCCCChHHHHHHHHHHh---CCcEEEEeC
Q 003873 399 AAILSGSPGMGKTTAAKLVCQML---GFQAIEVNA 430 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkel---g~~iiEina 430 (790)
.++|+|++|+||||+++.|++.+ |+.++....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 58899999999999999999998 898887653
No 230
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=96.25 E-value=0.011 Score=61.56 Aligned_cols=79 Identities=9% Similarity=0.096 Sum_probs=64.2
Q ss_pred CCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEeccccc----------ccccEEEecCCCCcchHHHHHHhCCceeCHH
Q 003873 202 PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVS----------KKTNYLLCDEDIAGAKSTKAKELGTPFLTED 271 (790)
Q Consensus 202 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs----------~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~ 271 (790)
...|.|++|+|||....-.++.+..+++.+||.|..... ..++++|+.......+++.|...+++|++-+
T Consensus 153 ~~LF~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~~~~~~a~~~~i~iVs~E 232 (259)
T 1kzy_C 153 ENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAEALQLPVVSQE 232 (259)
T ss_dssp CCTTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCHHHHHHHHHHTCCEECHH
T ss_pred CCCCCCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChHHHHHHHHhcCCCEecHH
Confidence 357999999999987555677888899999999887763 5688988854433467789999999999999
Q ss_pred HHHHHHhhc
Q 003873 272 GLFDMIRAS 280 (790)
Q Consensus 272 ~f~~~l~~~ 280 (790)
-+++-|..+
T Consensus 233 Wv~~sI~~~ 241 (259)
T 1kzy_C 233 WVIQCLIVG 241 (259)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 999988654
No 231
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.22 E-value=0.0033 Score=61.82 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=25.5
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAI 426 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~ii 426 (790)
.++|.|++|+||||+++.|++.+++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 5889999999999999999999998654
No 232
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.20 E-value=0.0074 Score=70.62 Aligned_cols=25 Identities=36% Similarity=0.647 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.+.++|+|||||||||++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3689999999999999987776554
No 233
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.19 E-value=0.0031 Score=63.19 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=27.3
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.++|.|+||+||||+++.|++.+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 479999999999999999999999887765
No 234
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.19 E-value=0.019 Score=58.40 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=18.8
Q ss_pred CcEEEEECCCCCChHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVC 418 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lA 418 (790)
.+.++++||+||||||++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4689999999999999876664
No 235
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.17 E-value=0.0021 Score=62.50 Aligned_cols=25 Identities=40% Similarity=0.666 Sum_probs=23.0
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
+.++|.|+||+||||+++.|++.++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999886
No 236
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.15 E-value=0.0048 Score=61.21 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=27.9
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEe
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVN 429 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEin 429 (790)
....+.|.||+|+||||++++|+..+ |...+.++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 35789999999999999999999998 65534554
No 237
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.13 E-value=0.0027 Score=62.83 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=26.7
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
.+.|+|++|+||||+++.|++ +|+.++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 689999999999999999999 898877653
No 238
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=96.12 E-value=0.0069 Score=60.71 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=60.6
Q ss_pred CCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccc-----c-EEEecCCC--CcchH-HHHHHhCCceeCHHH
Q 003873 202 PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKT-----N-YLLCDEDI--AGAKS-TKAKELGTPFLTEDG 272 (790)
Q Consensus 202 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt-----~-~lv~G~~~--g~~K~-~kA~~~~i~ii~e~~ 272 (790)
+..|.|++|+|+|.+...+|++++.+|+.+||+|...++..+ . ++|+..+. ...|. ..|...+++||+.+-
T Consensus 113 ~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~W 192 (214)
T 1t15_A 113 RKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREW 192 (214)
T ss_dssp SCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHH
T ss_pred CcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEeccH
Confidence 347999999999998878999999999999999999988632 3 44443321 11233 245677999999999
Q ss_pred HHHHHhhc
Q 003873 273 LFDMIRAS 280 (790)
Q Consensus 273 f~~~l~~~ 280 (790)
+++-|...
T Consensus 193 i~dsi~~~ 200 (214)
T 1t15_A 193 VLDSVALY 200 (214)
T ss_dssp HHHHHHHT
T ss_pred HHHhHhhc
Confidence 99999764
No 239
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.11 E-value=0.0035 Score=61.79 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=29.4
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh-CCcEEEEeC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML-GFQAIEVNA 430 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel-g~~iiEina 430 (790)
+..++|.|++|+||||+++.|++.+ |+.++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 4679999999999999999999998 687776653
No 240
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.10 E-value=0.0041 Score=60.83 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=27.6
Q ss_pred EEEEECCCCCChHHHHHHHHHHh---CCcEEEEeC
Q 003873 399 AAILSGSPGMGKTTAAKLVCQML---GFQAIEVNA 430 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkel---g~~iiEina 430 (790)
.++|+|++|+||||+++.|++.+ |+.++....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 47899999999999999999999 998876644
No 241
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.09 E-value=0.0042 Score=62.91 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=26.8
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.++|.||||+||||+++.|++.+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 589999999999999999999999876654
No 242
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.09 E-value=0.017 Score=62.60 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=30.3
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
.....++|.|+||+|||+++..+|..+ |..++.++...
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 345689999999999999999888764 67777776543
No 243
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.08 E-value=0.0086 Score=65.79 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
...++|+||+|+||||++++++..+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999999876
No 244
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.07 E-value=0.0045 Score=63.64 Aligned_cols=32 Identities=19% Similarity=0.434 Sum_probs=28.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
+..+.|.||+|+||||+++.|++.+|+.++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 45799999999999999999999999876553
No 245
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=96.07 E-value=0.01 Score=60.43 Aligned_cols=76 Identities=9% Similarity=0.054 Sum_probs=61.4
Q ss_pred CCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEeccccccc------------ccEEEecCCCCcchHHHHHHhCCceeCH
Q 003873 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKK------------TNYLLCDEDIAGAKSTKAKELGTPFLTE 270 (790)
Q Consensus 203 ~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~k------------t~~lv~G~~~g~~K~~kA~~~~i~ii~e 270 (790)
..|.|++|+|||.+. .+|++++.+|+..||+|.....+- .+++|+..+......+.+.+.|++|++-
T Consensus 121 ~LF~G~~f~it~~~~-~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~d~~~~~~~~~~~~~v~s~ 199 (219)
T 3sqd_A 121 PLFKAKYFYITPGIC-PSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCREYFARGIDVHNA 199 (219)
T ss_dssp CTTTTEEEEECTTCS-SCHHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGGGGGGGHHHHHTTCCCEET
T ss_pred cccCCcEEEEeCCCC-CCHHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEecccHHHHHHHHHHCCCcEEeH
Confidence 369999999999884 689999999999999999987642 4577776544457778888899999998
Q ss_pred HHHHHHHhh
Q 003873 271 DGLFDMIRA 279 (790)
Q Consensus 271 ~~f~~~l~~ 279 (790)
+-++.-|=.
T Consensus 200 E~il~~Il~ 208 (219)
T 3sqd_A 200 EFVLTGVLT 208 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888766543
No 246
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=96.06 E-value=0.013 Score=59.08 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=62.5
Q ss_pred CCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEeccccccc--ccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKK--TNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 203 ~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~k--t~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
..|.|++|+||+... -+++++..+|+..||+|....... .+.+|++......+++.+.+.|+++++.+-+++-|...
T Consensus 114 ~lF~g~~~~~~~~~~-~~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~~~~~~~~~~~i~vvs~eWi~~sI~~q 192 (209)
T 2etx_A 114 RLLEGYEIYVTPGVQ-PPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHCSIPLRVGLPLLSPEFLLTGVLKQ 192 (209)
T ss_dssp CTTTTCEEEECTTCS-SCHHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGGGGCHHHHHHTCCEECTHHHHHHHHHT
T ss_pred CCcCCcEEEEeCCCC-CCHHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccHHHHHHHHHCCCeEEcHHHHHHHHHhc
Confidence 379999999999774 589999999999999999887653 24566655444567788888999999999999888754
No 247
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.02 E-value=0.0045 Score=64.30 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=29.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
...++|.|++|+||||+++.||+.+|+.++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 36799999999999999999999999988774
No 248
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.01 E-value=0.0051 Score=60.70 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=27.5
Q ss_pred EEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.+.|+|++|+||||+++.|++.+|+.++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 789999999999999999999999887664
No 249
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.96 E-value=0.0048 Score=63.31 Aligned_cols=31 Identities=32% Similarity=0.551 Sum_probs=27.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
+..++|.||+|+||||+++.|++.+|+..+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4689999999999999999999999876443
No 250
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.96 E-value=0.028 Score=55.41 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=25.8
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh---------CCcEEEEeCC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML---------GFQAIEVNAS 431 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel---------g~~iiEinaS 431 (790)
+.+||.+|+|+|||.++-.++..+ +..++.+-+.
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~ 91 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNK 91 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESS
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECH
Confidence 569999999999999988777654 4556665443
No 251
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.94 E-value=0.006 Score=63.37 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=28.4
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH---hCCcEEEEe
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM---LGFQAIEVN 429 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke---lg~~iiEin 429 (790)
...++|+|+||+||||+++.|++. +|+.++.++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 467999999999999999999998 688777554
No 252
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.94 E-value=0.017 Score=66.33 Aligned_cols=109 Identities=15% Similarity=0.147 Sum_probs=62.3
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCCchhhhhhcccCC---------------------Cchh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRGKADAKISKGIGG---------------------SNAN 451 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rsk~~~~i~~~~g~---------------------s~~~ 451 (790)
....++|.||+|+||||+++.++..+ |..++++...+.......... .++- +..+
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~-~~g~~~~~~~~~g~~~~~~~~p~~LS~g~ 358 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAY-SWGMDFEEMERQNLLKIVCAYPESAGLED 358 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHH-TTSCCHHHHHHTTSEEECCCCGGGSCHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHH-HcCCCHHHHHhCCCEEEEEeccccCCHHH
Confidence 35689999999999999999998765 445666654332110000000 0000 0011
Q ss_pred HHHHHHHHhhhhccccCCCCCceEEEEecCCCCCcc-----chhHHHHHHHHhhcCCCcEEEEeccc
Q 003873 452 SIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAG-----DRGGIADLIASIKISKIPIICICNDR 513 (790)
Q Consensus 452 ~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~-----~~~~l~~Ll~~i~~s~~pII~I~nd~ 513 (790)
..+-.+..+. ...+.+||||=+..|... .+..+..++..++...+.+|+++.+.
T Consensus 359 ~q~~~~a~~l--------~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 359 HLQIIKSEIN--------DFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHH--------TTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHH--------hhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 1111111111 245679999954455544 45667777777777778888887654
No 253
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.91 E-value=0.0046 Score=61.35 Aligned_cols=30 Identities=37% Similarity=0.498 Sum_probs=26.1
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
..+.|+||+|+||||+++.|+. +|+.++..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 3688999999999999999998 88877653
No 254
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.89 E-value=0.0049 Score=60.94 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=26.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCc--EEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQ--AIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~--iiEi 428 (790)
+..++|.|+||+||||+++.|++.++.. ++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 3578999999999999999999999763 5443
No 255
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.88 E-value=0.0065 Score=62.81 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=27.5
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
...+.|.||+|+||||++++||+.+|+.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 4578999999999999999999999987654
No 256
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.86 E-value=0.038 Score=62.06 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=30.2
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
.....++|.|+||+|||+++..+|... |..++.+....
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 345689999999999999998887655 67788776654
No 257
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.86 E-value=0.031 Score=62.59 Aligned_cols=39 Identities=28% Similarity=0.463 Sum_probs=31.5
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSR 434 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~r 434 (790)
.+..++|+|++|+||||++..||..+ |..+..+++...|
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 35789999999999999999998766 6777777765444
No 258
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.85 E-value=0.027 Score=60.20 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=30.3
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSR 434 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~r 434 (790)
.+..++|.||+|+||||++..||..+ +..+.-+++...|
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 46789999999999999999999776 5666665554333
No 259
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.84 E-value=0.025 Score=64.44 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=29.9
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHh----CCcEEEEeCCC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQML----GFQAIEVNASD 432 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkel----g~~iiEinaSd 432 (790)
.....++|.|+||+|||+++..+|..+ |..++.+....
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 356789999999999999998888765 45677776543
No 260
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.79 E-value=0.0058 Score=60.05 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=27.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.+..+.|+|++|+||||+++.|++. |+.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 3568999999999999999999998 8877654
No 261
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.77 E-value=0.032 Score=57.35 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+||||++++++..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45688999999999999999999765
No 262
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.76 E-value=0.0043 Score=67.15 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=29.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNA 430 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEina 430 (790)
.+.++|.||+|+|||+++..||+.++..+|..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 3589999999999999999999999987766544
No 263
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.75 E-value=0.012 Score=59.64 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=52.2
Q ss_pred CCcEEEEECCCCCChHHH-HHHHHHH--hCCcEEEEeCC-CCCCchhhhhhcccCCCc----hhHHHHHHHHhhhhcccc
Q 003873 396 AEKAAILSGSPGMGKTTA-AKLVCQM--LGFQAIEVNAS-DSRGKADAKISKGIGGSN----ANSIKELVSNEALSANMD 467 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTl-A~~lAke--lg~~iiEinaS-d~rsk~~~~i~~~~g~s~----~~~i~e~l~~a~~~~~~~ 467 (790)
.....+++||-|+||||. ++.+-+. .+..++-+++. |.|.... .+....|... .....+++..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~-~I~Sr~G~~~~a~~v~~~~di~~~-------- 97 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKE-KVVSHNGNAIEAINISKASEIMTH-------- 97 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC------------CBTTBCCEEEEESSGGGGGGS--------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhh-hHHHhcCCceeeEEeCCHHHHHHH--------
Confidence 356889999999999994 4554332 26777666653 4442211 1222222110 0001111111
Q ss_pred CCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEec
Q 003873 468 RSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICN 511 (790)
Q Consensus 468 ~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~n 511 (790)
......||+|||+..+..+.-..+..+. ...+||||.+-
T Consensus 98 -i~~~~dvV~IDEaQFf~~~~v~~l~~la----~~gi~Vi~~GL 136 (219)
T 3e2i_A 98 -DLTNVDVIGIDEVQFFDDEIVSIVEKLS----ADGHRVIVAGL 136 (219)
T ss_dssp -CCTTCSEEEECCGGGSCTHHHHHHHHHH----HTTCEEEEEEE
T ss_pred -HhcCCCEEEEechhcCCHHHHHHHHHHH----HCCCEEEEeec
Confidence 0134569999999998764333333332 45789888653
No 264
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.75 E-value=0.0073 Score=60.10 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=28.3
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
...+.|+|++||||||+++.|++.+|+.++..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 35678999999999999999999999888774
No 265
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.75 E-value=0.0034 Score=62.28 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=24.3
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
+..++|+|++|+||||+++.|++.++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999998753
No 266
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.67 E-value=0.019 Score=58.00 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=27.1
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHH----hCCcEEEEeCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQM----LGFQAIEVNAS 431 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAke----lg~~iiEinaS 431 (790)
....++|+|+||+|||++|.-+|.. .+..++++...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4568999999999999999776532 26667666543
No 267
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.64 E-value=0.0092 Score=60.78 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=29.2
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.....+.|+|++|+||||+++.|++.+|+.++..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 3456899999999999999999999999876653
No 268
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.61 E-value=0.0063 Score=60.51 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
..+.++|+||+|+||||+++.|++.++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 357899999999999999999999885
No 269
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.61 E-value=0.0085 Score=60.03 Aligned_cols=31 Identities=32% Similarity=0.522 Sum_probs=27.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
+..+.|+|++|+||||+++.|++ +|+.++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 35789999999999999999998 88877664
No 270
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.58 E-value=0.0077 Score=58.74 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.++|+||+|+||||+++.|+..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 271
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.57 E-value=0.022 Score=56.43 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=27.9
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEe
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVN 429 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEin 429 (790)
....+.|+||+|+||||+++.|+..+ +..++.++
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 34689999999999999999999876 66665553
No 272
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.56 E-value=0.026 Score=54.49 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.--++|.|++|+|||||++.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3568999999999999998887655
No 273
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.49 E-value=0.013 Score=57.06 Aligned_cols=34 Identities=32% Similarity=0.539 Sum_probs=27.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEe
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVN 429 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEin 429 (790)
....++|.|++|+||||+++.|+..+ |+.++.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 35689999999999999999999887 44455554
No 274
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.48 E-value=0.0082 Score=61.89 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=25.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
+..+.|+|++|+||||+++.|++.+|+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 4679999999999999999999999976
No 275
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.47 E-value=0.01 Score=59.38 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=27.7
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
..+.|+|++|+||||+++.|++.+|+.++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4689999999999999999999999877654
No 276
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.46 E-value=0.01 Score=65.34 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=29.9
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaS 431 (790)
....++|+||+|+||||++++++..++..++.++..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~ 203 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLP 203 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEecc
Confidence 457899999999999999999999988776554443
No 277
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.45 E-value=0.0094 Score=58.23 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.0
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
..++|.||+|+||||+++.|+..++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 46899999999999999999987654
No 278
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.39 E-value=0.0073 Score=59.91 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=26.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEi 428 (790)
+..++|+|++|+||||+++.|++.+ ++.+..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 4689999999999999999999986 4555444
No 279
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.37 E-value=0.0082 Score=60.05 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
....++|+||+|+||||+++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999998875
No 280
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=95.33 E-value=0.0058 Score=62.25 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=59.9
Q ss_pred CCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 205 LGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 205 l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
-.+.+|||||--+. +...+++.+||.|...++ ++++||++.-....|+-.|...|+.||+.+-+.+-+...
T Consensus 6 ~~~~~v~fSG~~~~----~~~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~ 76 (220)
T 3l41_A 6 SKRVYITFTGYDKK----PSIDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTH 76 (220)
T ss_dssp -CCEEEEECSCSSC----CCCGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHT
T ss_pred cceEEEEEeccCCC----CCcchHhhcceeeccCch-hhhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhhhh
Confidence 35779999995543 359999999999999996 599999998767799999999999999999888888654
No 281
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.31 E-value=0.0094 Score=62.77 Aligned_cols=30 Identities=37% Similarity=0.492 Sum_probs=25.5
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh-CCcEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML-GFQAIE 427 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel-g~~iiE 427 (790)
..++|.|+||+||||+++.|++.+ ++.++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 578999999999999999999974 765553
No 282
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.28 E-value=0.012 Score=61.88 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=27.5
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.+..+.|+|++|+||||+++.|+ .+|+.++..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 35679999999999999999999 689877664
No 283
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.26 E-value=0.0092 Score=58.44 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.6
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
+.+.|.||+|+||||++++|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999998764
No 284
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.25 E-value=0.01 Score=64.30 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=27.6
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
..++|+||+|+||||++..||+.++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 57999999999999999999999996555543
No 285
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.25 E-value=0.0069 Score=60.16 Aligned_cols=34 Identities=29% Similarity=0.241 Sum_probs=27.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh-CCcEEEEe
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML-GFQAIEVN 429 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel-g~~iiEin 429 (790)
....+.|+|++|+||||+++.|+..+ ++.++..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 34678899999999999999999987 66555543
No 286
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.24 E-value=0.013 Score=58.65 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=27.9
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
..+.|.||+||||||+++.||+.+|+.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 579999999999999999999999999874
No 287
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.23 E-value=0.026 Score=53.53 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
...++|.|++|+||||+++.+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998643
No 288
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.23 E-value=0.012 Score=57.96 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
...+.|.||+|+||||++++|+..+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999998864
No 289
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.16 E-value=0.01 Score=58.50 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
...+.|.||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999876
No 290
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.16 E-value=0.066 Score=52.53 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=24.7
Q ss_pred CceEEEEecCCCCCccc-hhHHHHHHHHhhcCCCcEEEEecc
Q 003873 472 PKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~-~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
.-.+|||||+|.+.... ...+..++..+. ...++|+.+.+
T Consensus 146 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~-~~~~~l~~SAT 186 (206)
T 1vec_A 146 HVQMIVLDEADKLLSQDFVQIMEDIILTLP-KNRQILLYSAT 186 (206)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHSC-TTCEEEEEESC
T ss_pred cCCEEEEEChHHhHhhCcHHHHHHHHHhCC-ccceEEEEEee
Confidence 45699999999887633 334445554432 24566666654
No 291
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=95.15 E-value=0.025 Score=56.50 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=55.4
Q ss_pred CCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCceeCHHHHHHHHhhc
Q 003873 203 DCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 203 ~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
..|.|+.|+|.+.+...+|++++++|+.+||+|...+. .++++| |.... ++..++++|+++-+++=|...
T Consensus 118 ~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~-~~~iiI-~~~~~------~~~~~~~~V~p~Wi~DsI~~~ 187 (199)
T 3u3z_A 118 TLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPR-QASIVI-GPYSG------KKKATVKYLSEKWVLDSITQH 187 (199)
T ss_dssp CTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGG-GCSEEE-SCCCS------CCCTTCEEECHHHHHHHHHHT
T ss_pred hhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCC-CCEEEE-eCCch------hccCCCcEEChhHHHHHHHcC
Confidence 47999965555556678999999999999999999995 577765 55433 245789999999999998764
No 292
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.10 E-value=0.034 Score=59.40 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
....+.|.||+|+|||||+++|+..+.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 456899999999999999999997763
No 293
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.08 E-value=0.029 Score=65.95 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEe
Q 003873 361 NQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVN 429 (790)
Q Consensus 361 ~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEin 429 (790)
|+.+.+.|...|.. ....||.||||||||+++-.+..++ +..++-+.
T Consensus 191 N~~Q~~AV~~al~~----------------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a 240 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ----------------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 240 (646)
T ss_dssp CHHHHHHHHHHHHC----------------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHhcC----------------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEc
Confidence 88888888887764 2478999999999997764444333 55554443
No 294
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.07 E-value=0.085 Score=56.82 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=27.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNA 430 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEina 430 (790)
.+..+.|.||+|+||||+++.||..+ +..+.-...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~ 165 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee
Confidence 46789999999999999999999876 445544433
No 295
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.05 E-value=0.13 Score=54.78 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=24.3
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh-----CCcEEEEeC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML-----GFQAIEVNA 430 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel-----g~~iiEina 430 (790)
+.+++.+|+|+|||.++-..+-++ +..++.+-+
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 689999999999999876655444 445555544
No 296
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.01 E-value=0.017 Score=57.72 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=28.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC----CcEEEEe
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG----FQAIEVN 429 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg----~~iiEin 429 (790)
....++|.|++|+||||+++.|++.++ +.++.++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 346899999999999999999998774 5566665
No 297
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.00 E-value=0.044 Score=62.78 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=59.6
Q ss_pred CCcEEEEECCCCCChHHHHHHH--HHHh--CCcEEEEeCCCCCCchhhhhhcccCCC-----------------------
Q 003873 396 AEKAAILSGSPGMGKTTAAKLV--CQML--GFQAIEVNASDSRGKADAKISKGIGGS----------------------- 448 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~l--Akel--g~~iiEinaSd~rsk~~~~i~~~~g~s----------------------- 448 (790)
....++|.||+|+|||||++.+ +..+ +-..++++..+...... .....++-.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~-~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~ 116 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDII-KNARSFGWDLAKLVDEGKLFILDASPDPEGQE 116 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHH-HHHGGGTCCHHHHHHTTSEEEEECCCCSSCCS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHH-HHHHHcCCChHHhhccCcEEEEecCcccchhh
Confidence 3578999999999999999994 3333 34456665543211000 000000000
Q ss_pred --chhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCc------cchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 449 --NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSA------GDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 449 --~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~------~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
..-.+.+++.......+ ...+.+|+|||+-.+.. ..+..+..++..+....+.||+++.+
T Consensus 117 ~l~~~~l~~~~~~~~~~LS----~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~ 184 (525)
T 1tf7_A 117 VVGGFDLSALIERINYAIQ----KYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTER 184 (525)
T ss_dssp CCSSHHHHHHHHHHHHHHH----HHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhcccCHHHHHHHHHHHHH----HcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 01112222222111111 13456999999976543 22355667777666556778887664
No 298
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.95 E-value=0.033 Score=56.28 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=19.0
Q ss_pred EEEEECCCCCChHHHHHHHHHH
Q 003873 399 AAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAke 420 (790)
-|+|.|.+|+|||+|++.+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4788899999999999988753
No 299
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.94 E-value=0.12 Score=54.84 Aligned_cols=37 Identities=30% Similarity=0.331 Sum_probs=29.1
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
....+.|+|++|+||||++..+|..+ +..+.-+++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 45688889999999999999998766 66666665543
No 300
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.92 E-value=0.016 Score=58.01 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
..+.++|+||+|+||||+++.|++.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999998865
No 301
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.89 E-value=0.61 Score=47.62 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.-.|+|.|.+|+||||++..|...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 457899999999999999998754
No 302
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.88 E-value=0.073 Score=53.06 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=24.7
Q ss_pred CceEEEEecCCCCCccc-hhHHHHHHHHhhcCCCcEEEEecc
Q 003873 472 PKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~-~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
.-.+|||||+|.+.... ...+..++..+. ...++|+++.+
T Consensus 155 ~~~~iViDEah~~~~~~~~~~l~~i~~~~~-~~~~~i~lSAT 195 (224)
T 1qde_A 155 KIKMFILDEADEMLSSGFKEQIYQIFTLLP-PTTQVVLLSAT 195 (224)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHHSC-TTCEEEEEESS
T ss_pred hCcEEEEcChhHHhhhhhHHHHHHHHHhCC-ccCeEEEEEee
Confidence 45799999999876532 334555555432 34556666654
No 303
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.85 E-value=0.015 Score=57.72 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=26.3
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhC--CcEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLG--FQAIE 427 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg--~~iiE 427 (790)
...+.|.||+|+||||+++.|+..++ +.++.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 45788999999999999999999987 54444
No 304
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.82 E-value=0.015 Score=57.81 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+.+.|.||+|+||||++++|+..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46799999999999999999998764
No 305
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.81 E-value=0.025 Score=53.13 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.0
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
-.++|.|++|+||||+++.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998653
No 306
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.78 E-value=0.016 Score=64.16 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=27.1
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
+.++|+||+|+|||+++..||+.++..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 5789999999999999999999998765443
No 307
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.78 E-value=0.17 Score=55.11 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=26.5
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCC--cEEEEe
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGF--QAIEVN 429 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~--~iiEin 429 (790)
...++|+||+|+||||++++++..+.. ..+.++
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 468999999999999999999987742 345554
No 308
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.77 E-value=0.091 Score=51.49 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=24.1
Q ss_pred CceEEEEecCCCCCccc-hhHHHHHHHHhhcCCCcEEEEecc
Q 003873 472 PKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~-~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
.-.+|||||+|.+.... ...+..++..+. ...++|+++.+
T Consensus 144 ~~~~iViDEah~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT 184 (207)
T 2gxq_A 144 RVEVAVLDEADEMLSMGFEEEVEALLSATP-PSRQTLLFSAT 184 (207)
T ss_dssp TCSEEEEESHHHHHHTTCHHHHHHHHHTSC-TTSEEEEECSS
T ss_pred hceEEEEEChhHhhccchHHHHHHHHHhCC-ccCeEEEEEEe
Confidence 45699999999876532 334445544332 34566666654
No 309
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.75 E-value=0.099 Score=51.66 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....++|.|++|+||||++..++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999998754
No 310
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.72 E-value=0.028 Score=54.60 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.--++|.|++|+||||+++.+....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3568999999999999999998754
No 311
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.71 E-value=0.019 Score=57.30 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
....+.|.||+|+||||++++|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346888999999999999999998874
No 312
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.69 E-value=0.028 Score=54.36 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
...++|.|++|+||||+++.+....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998643
No 313
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.69 E-value=0.031 Score=54.70 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.1
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
....++|.|++|+||||++..++..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3467999999999999999998754
No 314
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.62 E-value=0.047 Score=50.80 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.2
Q ss_pred cEEEEECCCCCChHHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAke 420 (790)
-.++|.|++|+||||++..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999988754
No 315
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.57 E-value=0.03 Score=62.71 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=53.5
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCCCCCCchhhhhhcccC--------CCchhHHHHHHHHhhhhccc
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIG--------GSNANSIKELVSNEALSANM 466 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaSd~rsk~~~~i~~~~g--------~s~~~~i~e~l~~a~~~~~~ 466 (790)
...+..++.|+|||||||++..++.. ...+-+.+... ....+...+. ......+..++.+...
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~--~~~lVlTpT~~---aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~---- 229 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF--EEDLILVPGRQ---AAEMIRRRANASGIIVATKDNVRTVDSFLMNYGK---- 229 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT--TTCEEEESCHH---HHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTS----
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc--CCeEEEeCCHH---HHHHHHHHhhhcCccccccceEEEeHHhhcCCCC----
Confidence 34678999999999999999877642 22333333211 0001111110 0112234444433210
Q ss_pred cCCCCCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 467 DRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 467 ~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
.......+|||||+-.+.. +.+..++..+.. ..+|+++..
T Consensus 230 -~~~~~~d~liiDE~sm~~~---~~l~~l~~~~~~--~~vilvGD~ 269 (446)
T 3vkw_A 230 -GARCQFKRLFIDEGLMLHT---GCVNFLVEMSLC--DIAYVYGDT 269 (446)
T ss_dssp -SCCCCCSEEEEETGGGSCH---HHHHHHHHHTTC--SEEEEEECT
T ss_pred -CCCCcCCEEEEeCcccCCH---HHHHHHHHhCCC--CEEEEecCc
Confidence 0001257999999986654 344445554332 667777764
No 316
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=94.56 E-value=0.034 Score=55.72 Aligned_cols=78 Identities=15% Similarity=0.260 Sum_probs=56.8
Q ss_pred CCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccc------------------------cccEEEecCCCCcchH
Q 003873 202 PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSK------------------------KTNYLLCDEDIAGAKS 257 (790)
Q Consensus 202 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~------------------------kt~~lv~G~~~g~~K~ 257 (790)
+..|.|.+|+|+|.+....|++++++|+..||+|...... -|.|+|...... .+.
T Consensus 102 ~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~-~~~ 180 (210)
T 2nte_A 102 PKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCN-YHP 180 (210)
T ss_dssp CCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSS-CCC
T ss_pred ccccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccc-cCH
Confidence 4479999999999988889999999999999999863211 144555443211 112
Q ss_pred HHHHHhCCceeCHHHHHHHHhhc
Q 003873 258 TKAKELGTPFLTEDGLFDMIRAS 280 (790)
Q Consensus 258 ~kA~~~~i~ii~e~~f~~~l~~~ 280 (790)
++|...+|.+++.+-|++-|...
T Consensus 181 ~~~~~~~v~~V~~~Wl~dcI~~~ 203 (210)
T 2nte_A 181 ERVRQGKVWKAPSSWFIDCVMSF 203 (210)
T ss_dssp SCSEETTEEEEEHHHHHHHHHHT
T ss_pred HHHhccCcccccHHHHHHHHHhC
Confidence 33556679999999999988754
No 317
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.54 E-value=0.095 Score=54.16 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=24.4
Q ss_pred CceEEEEecCCCCCccc-hhHHHHHHHHhhcCCCcEEEEecc
Q 003873 472 PKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~-~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
.-.+|||||+|.|.... ...+..++..+. ...++|+++.+
T Consensus 201 ~l~~lViDEah~l~~~~~~~~l~~i~~~~~-~~~q~l~~SAT 241 (262)
T 3ly5_A 201 NLQCLVIDEADRILDVGFEEELKQIIKLLP-TRRQTMLFSAT 241 (262)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHHSC-SSSEEEEECSS
T ss_pred cCCEEEEcChHHHhhhhHHHHHHHHHHhCC-CCCeEEEEEec
Confidence 34689999999887632 334445555442 34556666554
No 318
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.52 E-value=0.061 Score=53.52 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=23.7
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh------CCcEEEEeC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML------GFQAIEVNA 430 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel------g~~iiEina 430 (790)
+.+++.+|+|+|||.++-..+-.. +..++.+-+
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 90 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCH 90 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECS
T ss_pred CCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeC
Confidence 569999999999998876665544 235555544
No 319
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.52 E-value=0.038 Score=52.57 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.4
Q ss_pred cEEEEECCCCCChHHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAke 420 (790)
-.++|.|++|+||||+++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
No 320
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.50 E-value=0.033 Score=52.83 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...++|.|++|+||||++..+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999999754
No 321
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.45 E-value=0.05 Score=57.58 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+..+.|.||+|+||||+++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 356788999999999999999998885
No 322
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.45 E-value=0.095 Score=58.62 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=28.8
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaS 431 (790)
+.+||++|+|+|||.++-.++..++..++.+-+.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 3599999999999999988888888877777654
No 323
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.44 E-value=0.048 Score=53.01 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.-.++|.|++|+||||++..++..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999764
No 324
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.42 E-value=0.12 Score=51.76 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=25.1
Q ss_pred CceEEEEecCCCCCccc-hhHHHHHHHHhhcCCCcEEEEecc
Q 003873 472 PKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~-~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
.-.+|||||+|.+.... ...+..++..+. ....+|+.+.+
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~-~~~~~l~~SAT 207 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDVR-PDRQTVMTSAT 207 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHSC-SSCEEEEEESC
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhCC-cCCeEEEEEee
Confidence 34699999999887543 344555655543 34566665554
No 325
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.39 E-value=0.027 Score=57.39 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=27.7
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIE 427 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiE 427 (790)
..+.|+|++||||||+++.||+.+|+.++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 578999999999999999999999998765
No 326
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.36 E-value=0.027 Score=54.00 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.-.++|.|++|+||||+++.+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999998754
No 327
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.33 E-value=0.047 Score=60.86 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=36.1
Q ss_pred CCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 352 PKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 352 P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
+-++++|--.......|...+.. ....++|+||+|+||||++++++..+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~~---------------------~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIKR---------------------PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHTS---------------------SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHHHHHHHh---------------------cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 44677776666555555444311 245799999999999999999999884
No 328
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=94.31 E-value=0.1 Score=54.25 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=23.2
Q ss_pred EEEEECCCCCChHHHHHHHHHHh---C-CcEEEEeC
Q 003873 399 AAILSGSPGMGKTTAAKLVCQML---G-FQAIEVNA 430 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkel---g-~~iiEina 430 (790)
..||++|+|+|||.++-+++..+ + ..++.+-+
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~P 165 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVP 165 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECS
T ss_pred CeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 45789999999999997776643 2 35655544
No 329
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.31 E-value=0.094 Score=53.24 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=24.4
Q ss_pred CceEEEEecCCCCCccc-hhHHHHHHHHhhcCCCcEEEEecc
Q 003873 472 PKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~-~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
.-.+|||||+|.|.... ...+..++..+. ...++|+.+.+
T Consensus 176 ~~~~lViDEah~l~~~~~~~~~~~i~~~~~-~~~q~~~~SAT 216 (242)
T 3fe2_A 176 RTTYLVLDEADRMLDMGFEPQIRKIVDQIR-PDRQTLMWSAT 216 (242)
T ss_dssp TCCEEEETTHHHHHHTTCHHHHHHHHTTSC-SSCEEEEEESC
T ss_pred cccEEEEeCHHHHhhhCcHHHHHHHHHhCC-ccceEEEEEee
Confidence 44689999999887632 334445554432 34566665554
No 330
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.30 E-value=0.038 Score=53.52 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.-.++|.|++|+|||||+..++..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999998864
No 331
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.28 E-value=0.036 Score=53.95 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.5
Q ss_pred cEEEEECCCCCChHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQ 419 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAk 419 (790)
-.++|.|++|+||||++..++.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999864
No 332
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.26 E-value=0.027 Score=56.05 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
....+.|.||+|+||||++++|+..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999998874
No 333
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.25 E-value=0.18 Score=60.67 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
....++|+||.|+||||+++.++-.
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 4568999999999999999999854
No 334
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.24 E-value=0.13 Score=59.76 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+||||++++++..+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999876
No 335
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.24 E-value=0.028 Score=56.98 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
....+.|.||+|+|||||+++|+..+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356899999999999999999998875
No 336
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.22 E-value=0.17 Score=61.98 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.5
Q ss_pred CCcEEEEECCCCCChHHHHHHHH
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVC 418 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lA 418 (790)
....++|+||.|+||||+++.++
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999984
No 337
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.21 E-value=0.14 Score=58.19 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....++|.||+|+||||+++.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45789999999999999999999876
No 338
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.20 E-value=0.048 Score=50.98 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.5
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
-.++|.|++|+||||++..+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999987543
No 339
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.16 E-value=0.026 Score=56.58 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=24.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAI 426 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~ii 426 (790)
.+.++|.||+|+|||++|..|++..+ .++
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iI 62 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLI 62 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEE
Confidence 57899999999999999999998865 443
No 340
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.14 E-value=0.068 Score=54.21 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=24.8
Q ss_pred CceEEEEecCCCCCccc----hhHHHHHHHHhhcCCCcEEEEecc
Q 003873 472 PKTVLIMDEVDGMSAGD----RGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~----~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
.-.+|||||+|.+.... ...+..++..+.....++++++.+
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT 219 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSAT 219 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESS
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 34689999999987532 233334433333456677776654
No 341
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.13 E-value=0.026 Score=56.86 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+||||++++|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999999876
No 342
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.12 E-value=0.051 Score=50.81 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.4
Q ss_pred cEEEEECCCCCChHHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAke 420 (790)
-.++|.|++|+||||++..++..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 343
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.08 E-value=0.21 Score=48.58 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=20.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...-++|.|++|+|||++++.+...
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999977654
No 344
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.07 E-value=0.016 Score=61.31 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=20.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
...+.|+||+|+||||+++.|++.++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999999876
No 345
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.05 E-value=0.046 Score=51.69 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.1
Q ss_pred cEEEEECCCCCChHHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAke 420 (790)
-.++|.|++|+||||++..++..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999853
No 346
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.03 E-value=0.2 Score=46.66 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=20.1
Q ss_pred EEEEECCCCCChHHHHHHHHHHh
Q 003873 399 AAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.++|.|++|+|||++++.++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999997653
No 347
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.02 E-value=0.066 Score=52.59 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.-.++|.|++|+||||+++.+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 356899999999999999998753
No 348
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.94 E-value=0.014 Score=57.81 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=22.3
Q ss_pred EEEEECCCCCChHHHHHHHHHHhC
Q 003873 399 AAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.++|.|++|+||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999984
No 349
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.91 E-value=0.03 Score=54.05 Aligned_cols=22 Identities=41% Similarity=0.427 Sum_probs=19.3
Q ss_pred CcEEEEECCCCCChHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVC 418 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lA 418 (790)
...+.|.||+|+||||+++++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 350
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.91 E-value=0.037 Score=56.41 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=27.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC--CcEEEE
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG--FQAIEV 428 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg--~~iiEi 428 (790)
....++|.||+|+||||+++.|++.++ +.++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 356789999999999999999999986 566544
No 351
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.89 E-value=0.038 Score=53.10 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
...+.|.||.|+||||++++++..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999999999999987
No 352
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.87 E-value=0.078 Score=50.74 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.-.++|.|++|+||||+++.++..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999863
No 353
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.85 E-value=0.14 Score=54.91 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=30.3
Q ss_pred CCCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 395 SAEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 395 ~~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
..+..++|+||+|+||||++..||..+ |..++-+++.-
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 346789999999999999999998766 66776665543
No 354
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.85 E-value=0.11 Score=63.25 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.2
Q ss_pred CCcEEEEECCCCCChHHHHHHHHH
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQ 419 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAk 419 (790)
....++|+||.|+||||+.+.++.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 457899999999999999999873
No 355
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.84 E-value=0.041 Score=56.31 Aligned_cols=31 Identities=35% Similarity=0.582 Sum_probs=27.4
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEV 428 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEi 428 (790)
.-+-|.||||+||||.++.|++.+|+..+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 4577999999999999999999999887764
No 356
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.83 E-value=0.047 Score=63.81 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=30.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNA 430 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEina 430 (790)
....++|+|++|+||||+++.|++.+ |+.++.++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 35679999999999999999999999 998888753
No 357
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.82 E-value=0.25 Score=47.32 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
....++|.|++|+||||+++.+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457999999999999999998754
No 358
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.81 E-value=0.074 Score=59.32 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=23.9
Q ss_pred cEEEEECCCCCChHHHH-HHHHH---HhCCcEEEEeCC
Q 003873 398 KAAILSGSPGMGKTTAA-KLVCQ---MLGFQAIEVNAS 431 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA-~~lAk---elg~~iiEinaS 431 (790)
+.+|++||+|+|||.++ ..+.+ .-|..++.+-+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt 40 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPT 40 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcH
Confidence 68999999999999986 33332 235666666553
No 359
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.80 E-value=0.06 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...++|.|++|+|||||+..+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999998753
No 360
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.76 E-value=0.16 Score=54.50 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=18.5
Q ss_pred CcEEEEECCCCCChHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQ 419 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAk 419 (790)
.+.+|+.+|+|+|||.++-..+-
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~~ 66 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTML 66 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 37899999999999987655443
No 361
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.76 E-value=0.046 Score=51.09 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=20.5
Q ss_pred cEEEEECCCCCChHHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAke 420 (790)
-.++|.|++|+||||++..++..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 362
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.69 E-value=0.041 Score=56.31 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQ 424 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~ 424 (790)
...+-|.||+|+||||+++.|+..+|..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 4578899999999999999999988754
No 363
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.69 E-value=0.099 Score=52.94 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=24.6
Q ss_pred CceEEEEecCCCCCcc-chhHHHHHHHHhhcCCCcEEEEecc
Q 003873 472 PKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~-~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
.-.+|||||+|.+... ....+..++..+. ...++|+++.+
T Consensus 173 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~-~~~~~i~~SAT 213 (237)
T 3bor_A 173 WIKMFVLDEADEMLSRGFKDQIYEIFQKLN-TSIQVVLLSAT 213 (237)
T ss_dssp TCCEEEEESHHHHHHTTCHHHHHHHHHHSC-TTCEEEEECSS
T ss_pred cCcEEEECCchHhhccCcHHHHHHHHHhCC-CCCeEEEEEEe
Confidence 3469999999987643 2334455555432 34566666654
No 364
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.68 E-value=0.037 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.5
Q ss_pred cEEEEECCCCCChHHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAke 420 (790)
-.++|.|++|+||||+++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999854
No 365
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=93.66 E-value=0.16 Score=57.86 Aligned_cols=71 Identities=11% Similarity=0.127 Sum_probs=39.2
Q ss_pred ceEEEEecCCCCCccchhHHH----HHHHHhhcCCCcEEEEecccchhhhhh-ccc-cccccccCCCCHHHHHHHHH
Q 003873 473 KTVLIMDEVDGMSAGDRGGIA----DLIASIKISKIPIICICNDRYSQKLKS-LVN-YCSDLRFRKPRKQEIAKRLM 543 (790)
Q Consensus 473 ~~VLIIDEiD~L~~~~~~~l~----~Ll~~i~~s~~pII~I~nd~~~~~l~~-L~s-R~~~I~F~~pt~~ei~~iL~ 543 (790)
+.+|||||+..+.......+. .|....+...+.+|+++.......+.. ++. ....|.|.-.+..+...+|.
T Consensus 298 ~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 298 YIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred cEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 358999999766542222233 333333455667776665433233332 332 23456777777777766653
No 366
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.63 E-value=0.04 Score=51.70 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.1
Q ss_pred cEEEEECCCCCChHHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAke 420 (790)
-.++|.|++|+||||++..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999998753
No 367
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.61 E-value=0.21 Score=50.52 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
...++|.|++|+||||++..|+...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCC
Confidence 4579999999999999999998543
No 368
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.58 E-value=0.28 Score=55.93 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=30.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDSRG 435 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~rs 435 (790)
.++.++|+|++|+||||++..||..+ |..+.-+++...|.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~ 142 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRA 142 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 45789999999999999999998766 77777776644443
No 369
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.51 E-value=0.053 Score=53.86 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
...++|.|++|+||||++..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998763
No 370
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=93.51 E-value=0.12 Score=54.28 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=27.5
Q ss_pred cEEEEECCCCCChHHHHHHHHHHhCCcEEEEeCC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkelg~~iiEinaS 431 (790)
+.+++.+|+|+|||.++-..+-+.+..++.+-+.
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~ 65 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPT 65 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCC
Confidence 5799999999999998877777777777766553
No 371
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.50 E-value=0.17 Score=54.92 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=17.8
Q ss_pred cEEEEECCCCCChHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQ 419 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAk 419 (790)
+.+|+.+|+|+|||.++-+.+-
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHH
Confidence 4699999999999987655543
No 372
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.50 E-value=0.028 Score=56.81 Aligned_cols=27 Identities=30% Similarity=0.333 Sum_probs=17.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHH-HHhC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVC-QMLG 422 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lA-kelg 422 (790)
....+.|.||+|+||||+++.|+ ..+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 34689999999999999999999 7753
No 373
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.45 E-value=0.14 Score=59.51 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
....+.|.||+|+||||++++++..+.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 456899999999999999999998763
No 374
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.43 E-value=0.05 Score=53.82 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...++|.|++|+||||+++.++..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357899999999999999998764
No 375
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.42 E-value=0.072 Score=50.92 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.9
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
-.++|.|++|+||||++..+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998643
No 376
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=93.37 E-value=0.19 Score=57.92 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..++|+.|.+|+|||++++.+...+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sL 238 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSI 238 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999887665
No 377
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.36 E-value=0.16 Score=51.01 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=24.4
Q ss_pred CceEEEEecCCCCCccc-hhHHHHHHHHhhcCCCcEEEEecc
Q 003873 472 PKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~-~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
.-.+|||||+|.+.... ...+..++..+. ...++|+++.+
T Consensus 171 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~-~~~~~l~~SAT 211 (236)
T 2pl3_A 171 DLQMLVLDEADRILDMGFADTMNAVIENLP-KKRQTLLFSAT 211 (236)
T ss_dssp TCCEEEETTHHHHHHTTTHHHHHHHHHTSC-TTSEEEEEESS
T ss_pred cccEEEEeChHHHhcCCcHHHHHHHHHhCC-CCCeEEEEEee
Confidence 34689999999886532 344555555443 24556666554
No 378
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.35 E-value=0.11 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.2
Q ss_pred cEEEEECCCCCChHHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAke 420 (790)
-.++|.|++|+||||+++.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 379
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.35 E-value=0.11 Score=49.48 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...++|.|++|+||||+++.++..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 357899999999999999999864
No 380
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.33 E-value=0.083 Score=51.44 Aligned_cols=33 Identities=21% Similarity=0.146 Sum_probs=26.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEe
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVN 429 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEin 429 (790)
.+.+.|+|++|+||||++..|+..+ |+.+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4689999999999999999998876 56654443
No 381
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=93.33 E-value=0.27 Score=56.76 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 359 VGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 359 vG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.-...+.+.+..++..+.. ..+.+||++|+|+|||.++-.++..+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~------------------~~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQ------------------GKKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHT------------------TCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhc------------------CCCceEEEecCCCChHHHHHHHHHHH
Confidence 3455666666665655321 13568999999999999987776654
No 382
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.33 E-value=0.073 Score=50.45 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...++|.|++|+||||+++.+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999988764
No 383
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.30 E-value=0.06 Score=52.83 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...++|.|++|+||||++..++..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998853
No 384
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.27 E-value=0.11 Score=48.40 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.5
Q ss_pred cEEEEECCCCCChHHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAke 420 (790)
..++|.|++|+||||+++.++..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 385
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.27 E-value=0.024 Score=56.25 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=19.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQ 419 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAk 419 (790)
.-.++|.|++|+||||+++.++.
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35688999999999999988873
No 386
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.27 E-value=0.057 Score=52.33 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.-.++|.|++|+||||+++.+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999998754
No 387
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.23 E-value=0.051 Score=53.06 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...++|.|++|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999988753
No 388
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.13 E-value=0.23 Score=58.88 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=26.6
Q ss_pred CceEEEEecCCCCCccchhH-HHHHHHHhhcCCCcEEEEecc
Q 003873 472 PKTVLIMDEVDGMSAGDRGG-IADLIASIKISKIPIICICND 512 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~~~~-l~~Ll~~i~~s~~pII~I~nd 512 (790)
...+|||||+|.+....++. +..++..+.. ...+|+++.+
T Consensus 138 ~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~-~~~ii~lSAT 178 (720)
T 2zj8_A 138 DVKILVADEIHLIGSRDRGATLEVILAHMLG-KAQIIGLSAT 178 (720)
T ss_dssp GEEEEEEETGGGGGCTTTHHHHHHHHHHHBT-TBEEEEEECC
T ss_pred cCCEEEEECCcccCCCcccHHHHHHHHHhhc-CCeEEEEcCC
Confidence 34799999999987655543 4445555553 5677776654
No 389
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.13 E-value=0.23 Score=47.92 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.-.++|.|++|+||||+++.++..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999854
No 390
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.12 E-value=0.21 Score=50.82 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=24.3
Q ss_pred CceEEEEecCCCCCccc-hhHHHHHHHHhhcC---CCcEEEEecc
Q 003873 472 PKTVLIMDEVDGMSAGD-RGGIADLIASIKIS---KIPIICICND 512 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~-~~~l~~Ll~~i~~s---~~pII~I~nd 512 (790)
.-.+|||||+|.|.... ...+..++..+... ...+|+++.+
T Consensus 174 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT 218 (253)
T 1wrb_A 174 FCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSAT 218 (253)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESS
T ss_pred hCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEe
Confidence 34689999999886532 33455555533222 3456666554
No 391
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=93.07 E-value=0.36 Score=59.69 Aligned_cols=108 Identities=15% Similarity=0.185 Sum_probs=55.6
Q ss_pred cEEEEECCCCCChHHHHHHHHHH---hCCcEEEEeCCCCCCc-hhhhhhc-------ccCCC-----------chhHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQM---LGFQAIEVNASDSRGK-ADAKISK-------GIGGS-----------NANSIKE 455 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAke---lg~~iiEinaSd~rsk-~~~~i~~-------~~g~s-----------~~~~i~e 455 (790)
+.+|+++|+|+|||.++...+.. -+..++.+.+...-.. ....+.. ..|+. +...+..
T Consensus 102 ~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~~~~~IvV~Tpe~L~~ 181 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRS 181 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEECTTCSEEEEEHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccCCCCCEEEEcHHHHHH
Confidence 57999999999999987443332 2667777765411000 0000000 00110 1223333
Q ss_pred HHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHH-HHHHHhhcCCCcEEEEecc
Q 003873 456 LVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIA-DLIASIKISKIPIICICND 512 (790)
Q Consensus 456 ~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~-~Ll~~i~~s~~pII~I~nd 512 (790)
++..... ....-.+|||||+|.|....++... .++..+ ....++|+++.+
T Consensus 182 ~L~~~~~------~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l-~~~~~il~LSAT 232 (1010)
T 2xgj_A 182 MLYRGSE------VMREVAWVIFDEVHYMRDKERGVVWEETIILL-PDKVRYVFLSAT 232 (1010)
T ss_dssp HHHHTCT------TGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS-CTTCEEEEEECC
T ss_pred HHHcCcc------hhhcCCEEEEechhhhcccchhHHHHHHHHhc-CCCCeEEEEcCC
Confidence 3322110 1123469999999999776555443 344433 345666666543
No 392
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.07 E-value=0.23 Score=58.92 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=24.9
Q ss_pred CcEEEEECCCCCChHHHHHHHH-HH---hCCcEEEEeC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVC-QM---LGFQAIEVNA 430 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lA-ke---lg~~iiEina 430 (790)
.+.+|++||+|+|||+.+-..+ +. -+..++.+-+
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P 83 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTP 83 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4789999999999999985443 22 2566666654
No 393
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.06 E-value=0.036 Score=60.21 Aligned_cols=87 Identities=15% Similarity=0.194 Sum_probs=39.0
Q ss_pred cchhhhhcCCCCCcccc-----CCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHH
Q 003873 343 SLTWTEKYRPKTPNEIV-----GNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLV 417 (790)
Q Consensus 343 ~~lW~eKY~P~sl~dLv-----G~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~l 417 (790)
+.+|...-+..+..+++ |+...+.++..++++...........-.............+.|+|+||+||||++..|
T Consensus 20 ~~~w~~~~~~~~~~~~~~~~~~g~~~~l~~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L 99 (355)
T 3p32_A 20 GSMMAASHDDDTVDGLATAVRGGDRAALPRAITLVESTRPDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEAL 99 (355)
T ss_dssp -----------CHHHHHHHHHTTCTTHHHHHHHHHHCCSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHH
T ss_pred CccccccccCCCHHHHHHHHHcCCHHHHHHHHHHHhhcChhhHHHHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHH
Confidence 45788866666666654 3444444444444432110000000000000000123568999999999999999999
Q ss_pred HHHh---CCcEEEEe
Q 003873 418 CQML---GFQAIEVN 429 (790)
Q Consensus 418 Akel---g~~iiEin 429 (790)
+..+ |..+.-+.
T Consensus 100 ~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 100 GMHLIERGHRVAVLA 114 (355)
T ss_dssp HHHHHTTTCCEEEEE
T ss_pred HHHHHhCCCceEEEe
Confidence 8876 55554443
No 394
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.03 E-value=0.063 Score=57.21 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.+..+.|.||+|+||||+++.||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999999876
No 395
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.02 E-value=0.14 Score=49.26 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
..-++|.|++|+||||+++.++..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998754
No 396
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.02 E-value=0.061 Score=51.07 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.-.++|.|++|+||||++..+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357899999999999999998764
No 397
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.00 E-value=0.051 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.-.++|.|++|+||||++..++..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999998864
No 398
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.93 E-value=0.12 Score=47.70 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.3
Q ss_pred EEEEECCCCCChHHHHHHHHHHh
Q 003873 399 AAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.++|.|++|+||||++..++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998653
No 399
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=92.91 E-value=0.31 Score=60.16 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=25.3
Q ss_pred CceEEEEecCCCCCccchhH-HHHHHHHhhcCCCcEEEEecc
Q 003873 472 PKTVLIMDEVDGMSAGDRGG-IADLIASIKISKIPIICICND 512 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~~~~-l~~Ll~~i~~s~~pII~I~nd 512 (790)
...+|||||+|.+....++. +..++..+ ...+++|+.+.+
T Consensus 147 ~l~lvViDEaH~l~d~~~g~~~e~ii~~l-~~~v~iIlLSAT 187 (997)
T 4a4z_A 147 DVEFVIFDEVHYVNDQDRGVVWEEVIIML-PQHVKFILLSAT 187 (997)
T ss_dssp GEEEEEECCTTCCCTTCTTCCHHHHHHHS-CTTCEEEEEECC
T ss_pred CCCEEEEECcccccccchHHHHHHHHHhc-ccCCCEEEEcCC
Confidence 34699999999987654433 44555543 345666665543
No 400
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.85 E-value=0.092 Score=52.90 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=27.4
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEe
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVN 429 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEin 429 (790)
...++|.|++|+||||+++.|++.+ |+.++.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 4678899999999999999999988 56665543
No 401
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.84 E-value=0.3 Score=58.60 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=19.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...++|+||+|+||||++..++..
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999987776544
No 402
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=92.82 E-value=0.13 Score=57.43 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCChHHHH-HHHHHH---hCCcEEEEeC
Q 003873 397 EKAAILSGSPGMGKTTAA-KLVCQM---LGFQAIEVNA 430 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA-~~lAke---lg~~iiEina 430 (790)
.+.+|+.||+|+|||.++ -.+... -+..++.+-+
T Consensus 8 g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~P 45 (440)
T 1yks_A 8 GMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAP 45 (440)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcc
Confidence 578999999999999975 333332 2555666554
No 403
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.80 E-value=0.14 Score=49.70 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...++|.|++|+|||||+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999998754
No 404
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.80 E-value=0.07 Score=57.35 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
.+..+.|.||+||||||+++.|+..+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356788999999999999999999875
No 405
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.79 E-value=0.15 Score=47.74 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...++|.|++|+||||++..+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999753
No 406
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.78 E-value=0.072 Score=54.21 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh-CC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML-GF 423 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel-g~ 423 (790)
+..++|.|++|+||||+++.|++.+ ++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3578999999999999999999999 44
No 407
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.78 E-value=0.066 Score=57.12 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=25.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhCCcE
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLGFQA 425 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg~~i 425 (790)
....+.|.||+|+||||++++|+..+.-.+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 357899999999999999999999874444
No 408
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.78 E-value=0.2 Score=58.14 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
....+.|.||+|+||||++++++..+.
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 456899999999999999999997763
No 409
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.76 E-value=0.28 Score=50.20 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=24.1
Q ss_pred CceEEEEecCCCCCccc-hhHHHHHHHHhhcCCCcEEEEecc
Q 003873 472 PKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 472 ~~~VLIIDEiD~L~~~~-~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
.-.+|||||+|.+.... ...+..++..+. ...++|+++.+
T Consensus 186 ~~~~lViDEah~l~~~~~~~~l~~i~~~~~-~~~~~l~~SAT 226 (249)
T 3ber_A 186 ALKYLVMDEADRILNMDFETEVDKILKVIP-RDRKTFLFSAT 226 (249)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHSSC-SSSEEEEEESS
T ss_pred ccCEEEEcChhhhhccChHHHHHHHHHhCC-CCCeEEEEecc
Confidence 34689999999876532 334455555432 24556665554
No 410
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.75 E-value=0.11 Score=49.64 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.-.++|.|++|+||||+++.+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999854
No 411
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.72 E-value=0.07 Score=52.09 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=25.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCcEEEE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQAIEV 428 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEi 428 (790)
.+.++|+||+|+||||++..|+..+ ++.+-.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i 40 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEE
Confidence 4689999999999999999998765 5554333
No 412
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=92.72 E-value=0.55 Score=52.93 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=24.8
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh---C-CcEEEEeCC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML---G-FQAIEVNAS 431 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel---g-~~iiEinaS 431 (790)
+.+||+||+|+|||.++-.++..+ + ..++.+-+.
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~ 166 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPT 166 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESS
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 468999999999999987666542 3 256665543
No 413
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.70 E-value=0.12 Score=49.67 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.-.++|.|++|+||||++..++..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999875
No 414
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.66 E-value=0.062 Score=61.47 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=26.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhC--CcEEEEe
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLG--FQAIEVN 429 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg--~~iiEin 429 (790)
...++|+||+|+||||++++++..+. ..++.+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitie 294 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence 35699999999999999999998773 3345554
No 415
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=92.64 E-value=0.067 Score=60.21 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=24.1
Q ss_pred CcEEEEECCCCCChHHHH-HHHHHH---hCCcEEEEeCC
Q 003873 397 EKAAILSGSPGMGKTTAA-KLVCQM---LGFQAIEVNAS 431 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA-~~lAke---lg~~iiEinaS 431 (790)
.+.+|+++|+|+|||+++ -.+... -+..++.+-+.
T Consensus 21 ~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Pt 59 (459)
T 2z83_A 21 RQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPT 59 (459)
T ss_dssp TCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECS
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECch
Confidence 478999999999999973 333332 25666666553
No 416
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.61 E-value=0.071 Score=57.03 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+||||++++|+..+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 45688899999999999999999877
No 417
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.60 E-value=0.064 Score=57.06 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
...+.|.||+|+||||++++|+..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46788999999999999999999876
No 418
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.59 E-value=0.72 Score=50.42 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=26.1
Q ss_pred EEEEECCCCCChHHHHHHHHHHh----CCcEEEEeCC
Q 003873 399 AAILSGSPGMGKTTAAKLVCQML----GFQAIEVNAS 431 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkel----g~~iiEinaS 431 (790)
.+||..|+|+|||..+-+++..+ +..++.+-+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 78999999999999988776655 5666666554
No 419
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.59 E-value=0.092 Score=61.51 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=19.9
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..+||.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999887766554
No 420
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.57 E-value=0.081 Score=51.79 Aligned_cols=28 Identities=18% Similarity=0.397 Sum_probs=23.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQA 425 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~i 425 (790)
.+++||.|++|+||||+|..+.+. |+.+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 579999999999999999988874 6543
No 421
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.55 E-value=0.086 Score=60.18 Aligned_cols=27 Identities=7% Similarity=-0.010 Sum_probs=25.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGF 423 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~ 423 (790)
...++|.|.+||||||++++||+.|+.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999985
No 422
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.54 E-value=0.12 Score=51.40 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
...++|.|++|+||||++..++..+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4678888999999999999999875
No 423
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.48 E-value=0.1 Score=53.17 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=24.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh-------CCcEEEEe
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML-------GFQAIEVN 429 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel-------g~~iiEin 429 (790)
...++|.||+|+||||+++.|++.+ |+.++.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 4678999999999999999999887 66665543
No 424
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.47 E-value=0.19 Score=58.44 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
....+.|.||+|+||||++++++..+.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 456899999999999999999998763
No 425
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.44 E-value=0.053 Score=53.20 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQ 419 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAk 419 (790)
.-.++|.|++|+|||||++.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 35689999999999999998874
No 426
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.43 E-value=0.3 Score=47.98 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
...++|.|++|+||||++..++...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998643
No 427
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.41 E-value=0.092 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.6
Q ss_pred cEEEEECCCCCChHHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAke 420 (790)
..++|.|++|+||||+++.++..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999863
No 428
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.40 E-value=0.27 Score=57.21 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
....+.|.||+|+||||++++++..+.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 456889999999999999999997763
No 429
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.39 E-value=0.11 Score=59.64 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=28.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNAS 431 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaS 431 (790)
.+..++|+|.||+||||+++.|++.+ +++...++..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D 72 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVG 72 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence 34689999999999999999999988 4455555543
No 430
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.38 E-value=0.066 Score=51.57 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...++|.|++|+||||+++.+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999864
No 431
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.36 E-value=0.081 Score=56.30 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=27.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASD 432 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd 432 (790)
.+..+.|.||+|+||||+++.||..+ +..+. ++..|
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~-l~g~d 137 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL-MAAGD 137 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE-EECCC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE-EEeec
Confidence 45789999999999999999999876 44443 44444
No 432
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.35 E-value=0.035 Score=57.42 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=25.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh-CCcE
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML-GFQA 425 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel-g~~i 425 (790)
....++|.|++|+||||+++.|++.+ ++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 35688999999999999999999998 5333
No 433
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=92.35 E-value=0.25 Score=53.15 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=23.7
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh------CCcEEEEeCC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML------GFQAIEVNAS 431 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel------g~~iiEinaS 431 (790)
+.+|+.+|+|+|||.++-+.+-.. +..++.+-+.
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 85 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 85 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCC
Confidence 579999999999998875554433 3355555443
No 434
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.26 E-value=0.63 Score=51.96 Aligned_cols=40 Identities=25% Similarity=0.333 Sum_probs=32.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh----CCcEEEEeCCCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML----GFQAIEVNASDSRG 435 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel----g~~iiEinaSd~rs 435 (790)
.++.++|+|++|+||||++-.||..+ |..+.-+++...+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~ 142 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRP 142 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 46789999999999999998888655 78888887765554
No 435
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.26 E-value=0.25 Score=47.84 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
.-.++|.|++|+||||+++.++..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999864
No 436
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.26 E-value=0.068 Score=54.68 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+|||||+++++..+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999999765
No 437
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.22 E-value=0.057 Score=52.94 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...++|.|++|+||||++..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999998764
No 438
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.20 E-value=0.094 Score=60.82 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=28.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC----CcEEEEe
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG----FQAIEVN 429 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg----~~iiEin 429 (790)
....++|+|++|+||||+++.|++.++ +.++.++
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 346789999999999999999999986 5666665
No 439
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.14 E-value=0.091 Score=50.65 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
+...+|+||.|+||||++.+|+-.++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 34789999999999999999998876
No 440
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.12 E-value=0.42 Score=57.26 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...++|+||.|+||||+++.++-.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 578999999999999999999854
No 441
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.94 E-value=0.12 Score=51.99 Aligned_cols=32 Identities=34% Similarity=0.412 Sum_probs=28.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVN 429 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~iiEin 429 (790)
.-++-|+|..||||||+++.+++ +|+.++..+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 35789999999999999999998 999888754
No 442
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=91.91 E-value=0.45 Score=55.58 Aligned_cols=42 Identities=10% Similarity=0.148 Sum_probs=26.6
Q ss_pred CCceEEEEecCCCCCccchhHHHHHHHHhhcCCCcEEEEecc
Q 003873 471 HPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICND 512 (790)
Q Consensus 471 ~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~s~~pII~I~nd 512 (790)
....+|||||+|.+.......+..++..+......+|+++.+
T Consensus 276 ~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~SAT 317 (618)
T 2whx_A 276 PNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTAT 317 (618)
T ss_dssp CCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSS
T ss_pred cCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEECC
Confidence 345799999999994433334445555544456677776654
No 443
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.90 E-value=0.072 Score=54.01 Aligned_cols=26 Identities=19% Similarity=0.251 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+|||||+++++..+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999999998665
No 444
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=91.90 E-value=0.38 Score=52.32 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=17.8
Q ss_pred cEEEEECCCCCChHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQ 419 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAk 419 (790)
+.+|+.+|+|+|||.++-+.+-
T Consensus 75 ~~~lv~a~TGsGKT~~~~~~~~ 96 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSISVL 96 (410)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHHHHH
Confidence 5699999999999987655443
No 445
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=91.88 E-value=0.41 Score=50.51 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=16.3
Q ss_pred CcEEEEECCCCCChHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAK 415 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~ 415 (790)
.+.+|+++|+|+|||.+.-
T Consensus 131 ~~~~l~~a~TGsGKT~a~~ 149 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAFV 149 (300)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCccHHHH
Confidence 4789999999999998743
No 446
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.84 E-value=0.081 Score=54.17 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+|||||+++++..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998765
No 447
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.83 E-value=0.081 Score=53.13 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...+.|.||.|+|||||+++++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999865
No 448
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.82 E-value=0.85 Score=50.79 Aligned_cols=36 Identities=31% Similarity=0.340 Sum_probs=29.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNAS 431 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaS 431 (790)
.+..++|.|++|+||||++..||..+ |..+.-+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 45788899999999999999999877 6667666653
No 449
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=91.78 E-value=0.17 Score=54.97 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=16.9
Q ss_pred cEEEEECCCCCChHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVC 418 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lA 418 (790)
+.+|+.+|+|+|||.++-+.+
T Consensus 78 ~~~lv~a~TGsGKT~~~~~~~ 98 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAISI 98 (414)
T ss_dssp CCEEECCCSCSSSHHHHHHHH
T ss_pred CCEEEECCCCCcccHHHHHHH
Confidence 459999999999998864443
No 450
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=91.78 E-value=0.26 Score=61.59 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=25.4
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCC
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNAS 431 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaS 431 (790)
+.+|++||+|+|||+++-..+... +..++.+.+.
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~Pt 236 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 236 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 679999999999999875554443 6666666553
No 451
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.74 E-value=0.045 Score=52.35 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=10.4
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
...++|.|++|+||||++..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999988743
No 452
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=91.72 E-value=0.28 Score=54.88 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCChHHH-H-HHHHH--HhCCcEEEEeC
Q 003873 397 EKAAILSGSPGMGKTTA-A-KLVCQ--MLGFQAIEVNA 430 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTl-A-~~lAk--elg~~iiEina 430 (790)
...+|+++|+|+|||+. + -++.. ..+..++.+-+
T Consensus 19 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~P 56 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAP 56 (451)
T ss_dssp TCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECC
Confidence 35779999999999984 3 33322 22555666554
No 453
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=91.67 E-value=0.02 Score=59.56 Aligned_cols=77 Identities=23% Similarity=0.328 Sum_probs=58.8
Q ss_pred CCCCCCcEEEE-EecCC-----CCCHHHHHHHHHHcCCEecccccccc-----cEEEecCCCCcchHHHHHHhCCceeCH
Q 003873 202 PDCLGGLTFVI-SGTLD-----SLEREEAEDLIKRHGGRVTGSVSKKT-----NYLLCDEDIAGAKSTKAKELGTPFLTE 270 (790)
Q Consensus 202 ~~~l~g~~~v~-TG~l~-----~~~R~~~~~~i~~~Gg~v~~~vs~kt-----~~lv~G~~~g~~K~~kA~~~~i~ii~e 270 (790)
.+.|.|.+||+ +|.+. ..+|++++.+|+++||++.......| +++|++. . .-|.+.+...|+.||.-
T Consensus 3 s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~-~-t~k~~~~~~~~~~vV~p 80 (264)
T 1z56_C 3 SNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCK-T-TTECKALIDRGYDILHP 80 (264)
T ss_dssp CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECS-C-CGGGGGGTTTTCCCBCS
T ss_pred cccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecC-C-cHHHHHHHhCCCCEEec
Confidence 35799999976 77653 36899999999999998877666555 4556654 3 35777777778999999
Q ss_pred HHHHHHHhhc
Q 003873 271 DGLFDMIRAS 280 (790)
Q Consensus 271 ~~f~~~l~~~ 280 (790)
+-+++=|+..
T Consensus 81 ~Wv~dci~~~ 90 (264)
T 1z56_C 81 NWVLDCIAYK 90 (264)
T ss_dssp STTHHHHSSC
T ss_pred hHHHHHhhcC
Confidence 9888888654
No 454
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.66 E-value=0.1 Score=53.63 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=22.0
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..+.|.||+|+||||++++++..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 688899999999999999999765
No 455
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.66 E-value=0.35 Score=56.15 Aligned_cols=27 Identities=22% Similarity=0.414 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHhC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQMLG 422 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkelg 422 (790)
....+.|.||+|+||||++++++..+.
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 456889999999999999999998764
No 456
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.64 E-value=0.11 Score=56.72 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=28.3
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCCCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNASDS 433 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaSd~ 433 (790)
.+..++|.||+|+||||+++.||..+ +..+ .++..|.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V-~l~g~D~ 195 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV-LMAAGDT 195 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE-EEECCCC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEE-EEecccc
Confidence 45789999999999999999999876 4444 3444443
No 457
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=91.62 E-value=0.17 Score=62.54 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=20.1
Q ss_pred CcEEEEECCCCCChHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVC 418 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lA 418 (790)
...++|+||.|+||||+++.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4789999999999999999984
No 458
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.59 E-value=0.098 Score=51.44 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=27.3
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEEEeCC
Q 003873 400 AILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS 431 (790)
Q Consensus 400 lLLsGPpGtGKTTlA~~lAkelg~~iiEinaS 431 (790)
+|++|++|+|||++|..++.. +.+++++..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 799999999999999999987 8788887654
No 459
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.56 E-value=0.25 Score=47.40 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.6
Q ss_pred CcEEEEECCCCCChHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQ 419 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAk 419 (790)
...++|.|++|+||||+++.+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999999884
No 460
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.51 E-value=0.092 Score=54.61 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+|||||+++++..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45688999999999999999998665
No 461
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=91.47 E-value=0.66 Score=48.33 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.3
Q ss_pred cEEEEECCCCCChHHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAke 420 (790)
..++|.|+||+||||+.+.++..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999853
No 462
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=91.43 E-value=0.076 Score=53.03 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.5
Q ss_pred cEEEEECCCCCChHHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAke 420 (790)
-.++|.|++|+||||++..++..
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 463
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.42 E-value=0.56 Score=41.44 Aligned_cols=71 Identities=20% Similarity=0.348 Sum_probs=54.9
Q ss_pred CCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccc-----------cccccEEEecCCCCcchHHHHHHhCCceeCH
Q 003873 202 PDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV-----------SKKTNYLLCDEDIAGAKSTKAKELGTPFLTE 270 (790)
Q Consensus 202 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~v-----------s~kt~~lv~G~~~g~~K~~kA~~~~i~ii~e 270 (790)
.+.|.|++|+|.+ ..+|++++.+|+.+||+|.... ..+.+++|++...- .+ +..+..+|..
T Consensus 10 ~~LF~g~~F~i~~---e~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~-~~----~~~~r~~VqP 81 (100)
T 2ep8_A 10 KKLFEGLKFFLNR---EVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQ-QT----SVIGRCYVQP 81 (100)
T ss_dssp CCTTSSCEEECCS---SSCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTT-SC----CBTTBEEECT
T ss_pred HHHcCCcEEEEec---CCCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccch-hh----hcCCCeEEcc
Confidence 4579999999977 3689999999999999998752 46889999985322 12 2245688998
Q ss_pred HHHHHHHhhc
Q 003873 271 DGLFDMIRAS 280 (790)
Q Consensus 271 ~~f~~~l~~~ 280 (790)
.-+++-|+..
T Consensus 82 qWV~Dcin~~ 91 (100)
T 2ep8_A 82 QWVFDSVNAR 91 (100)
T ss_dssp HHHHHHHHHT
T ss_pred hHHHHHHhcC
Confidence 8888888764
No 464
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.34 E-value=0.1 Score=56.98 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|||||||+++||..+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34688999999999999999999766
No 465
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.33 E-value=0.12 Score=54.03 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
....+.|.||.|+|||||+++|+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999975
No 466
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.33 E-value=0.18 Score=51.01 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=26.0
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHhCCcE
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQMLGFQA 425 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkelg~~i 425 (790)
...++|.|++|+||||.++.|++.++..+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 46899999999999999999999998643
No 467
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.32 E-value=0.15 Score=61.36 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=19.9
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
+.+||.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999887766554
No 468
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.27 E-value=0.76 Score=47.32 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.0
Q ss_pred cEEEEECCCCCChHHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAke 420 (790)
+.++|.|+||+||||++..+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46889999999999999999754
No 469
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=91.26 E-value=0.34 Score=54.27 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=16.6
Q ss_pred CcEEEEECCCCCChHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAK 415 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~ 415 (790)
.+.+|+++|+|+|||.++-
T Consensus 131 ~~~~l~~a~TGsGKT~~~~ 149 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAFV 149 (479)
T ss_dssp CCEEEEECCSSSSHHHHHH
T ss_pred CCcEEEEcCCCCchhHHHH
Confidence 4789999999999998753
No 470
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.22 E-value=0.062 Score=52.33 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=22.1
Q ss_pred cEEEEECCCCCChHHHHHHHHHHh
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
..+.|.||+|+||||++++|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999887
No 471
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.14 E-value=0.12 Score=53.34 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
....+.|.||+|+|||||+++++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468899999999999999999964
No 472
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.14 E-value=0.095 Score=52.91 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||.|+||||++++++..+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578899999999999999998765
No 473
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.07 E-value=0.11 Score=54.18 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+|||||+++|+..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 35688999999999999999999765
No 474
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.05 E-value=2.3 Score=47.16 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHH
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAke 420 (790)
..-+.|.|+||+|||||++.++..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CceEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999865
No 475
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.02 E-value=0.11 Score=52.88 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||.|+||||++++++..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35688999999999999999999766
No 476
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.00 E-value=0.11 Score=53.93 Aligned_cols=26 Identities=23% Similarity=0.472 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||.|+|||||+++++..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34688999999999999999998765
No 477
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.98 E-value=0.11 Score=53.30 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||.|+|||||+++++..+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34688999999999999999999765
No 478
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.97 E-value=0.13 Score=49.57 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=21.3
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.-.++|.|++|+||||+++.++...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999987543
No 479
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.94 E-value=0.13 Score=56.24 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|||||||+++||..+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34678999999999999999999765
No 480
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.94 E-value=0.11 Score=54.54 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+|||||+++++..+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 35689999999999999999999765
No 481
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.93 E-value=0.11 Score=54.28 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+|||||+++|+..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999999765
No 482
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.92 E-value=0.13 Score=56.58 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|||||||+++|+..+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34688999999999999999999766
No 483
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.92 E-value=0.11 Score=53.54 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+|||||+++++..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35688999999999999999998765
No 484
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.90 E-value=0.11 Score=53.86 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+|||||+++|+..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998654
No 485
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.90 E-value=0.12 Score=54.08 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHHHHh
Q 003873 399 AAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 399 ~lLLsGPpGtGKTTlA~~lAkel 421 (790)
.+.|.||+|+|||||+++|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999876
No 486
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.88 E-value=0.13 Score=56.15 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|||||||+++||..+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34678899999999999999999765
No 487
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=90.85 E-value=0.35 Score=54.95 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=19.0
Q ss_pred CcEEEEECCCCCChHHHHHH-HHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKL-VCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~-lAkel 421 (790)
.+.+||++|+|+|||.++-. +...+
T Consensus 158 ~~~~ll~apTGsGKT~~~~~~il~~l 183 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFALTMLSRV 183 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHHHHHHHS
T ss_pred CCCEEEECCCCccHHHHHHHHHHHHH
Confidence 47899999999999987544 34443
No 488
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=90.82 E-value=0.33 Score=58.32 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=27.0
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh---CCcEEEEeCC
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML---GFQAIEVNAS 431 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel---g~~iiEinaS 431 (790)
.+..+||.||.|+|||.++-..+-.. |..++.+-+.
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPt 426 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPT 426 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 34689999999999999886655433 7777777654
No 489
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=90.82 E-value=1 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.8
Q ss_pred cEEEEECCCCCChHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQ 419 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAk 419 (790)
..++|.|+||+||||++..++.
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999974
No 490
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.79 E-value=0.13 Score=56.28 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|||||||+++||..+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34688999999999999999999765
No 491
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=90.78 E-value=0.42 Score=51.37 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=25.3
Q ss_pred CCceEEEEecCCCCCccc-hhHHHHHHHHhhcCCCcEEEEeccc
Q 003873 471 HPKTVLIMDEVDGMSAGD-RGGIADLIASIKISKIPIICICNDR 513 (790)
Q Consensus 471 ~~~~VLIIDEiD~L~~~~-~~~l~~Ll~~i~~s~~pII~I~nd~ 513 (790)
....+|||||+|.+.... ...+..++..+. ...++|+++.+.
T Consensus 161 ~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~-~~~~~i~~SAT~ 203 (394)
T 1fuu_A 161 DKIKMFILDEADEMLSSGFKEQIYQIFTLLP-PTTQVVLLSATM 203 (394)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSC-TTCEEEEECSSC
T ss_pred hhCcEEEEEChHHhhCCCcHHHHHHHHHhCC-CCceEEEEEEec
Confidence 345799999999876532 334445554432 345677766543
No 492
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.77 E-value=0.13 Score=56.04 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|||||||+++||..+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34688899999999999999999765
No 493
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.69 E-value=0.12 Score=53.50 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||.|+|||||+++|+..+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999765
No 494
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.66 E-value=0.12 Score=53.84 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|+|||||+++++..+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 35688999999999999999999655
No 495
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.65 E-value=0.12 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
...+.|.||.|+|||||+++++..+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4688999999999999999998655
No 496
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.61 E-value=0.15 Score=52.26 Aligned_cols=28 Identities=36% Similarity=0.617 Sum_probs=24.7
Q ss_pred CcEEEEECCCCCChHHHHHHHHHHh---CCc
Q 003873 397 EKAAILSGSPGMGKTTAAKLVCQML---GFQ 424 (790)
Q Consensus 397 ~~~lLLsGPpGtGKTTlA~~lAkel---g~~ 424 (790)
...++|.|++|+||||+++.|++.+ |+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4689999999999999999999877 555
No 497
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.57 E-value=0.13 Score=53.66 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||.|+|||||+++++..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45688999999999999999998765
No 498
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.51 E-value=0.14 Score=50.04 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.7
Q ss_pred cEEEEECCCCCChHHHHHHHHHH
Q 003873 398 KAAILSGSPGMGKTTAAKLVCQM 420 (790)
Q Consensus 398 ~~lLLsGPpGtGKTTlA~~lAke 420 (790)
-.++|.|++|+|||||++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999875
No 499
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.51 E-value=0.13 Score=54.16 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||.|+|||||+++|+..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34678999999999999999998765
No 500
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.45 E-value=0.14 Score=56.07 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHHHHh
Q 003873 396 AEKAAILSGSPGMGKTTAAKLVCQML 421 (790)
Q Consensus 396 ~~~~lLLsGPpGtGKTTlA~~lAkel 421 (790)
....+.|.||+|||||||+++||..+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34678999999999999999999765
Done!