BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003874
(790 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 18/106 (16%)
Query: 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDA 357
+LTV +++ NL + ++TG SDPYV + K R +S++ T +P +++ L FD
Sbjct: 154 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 213
Query: 358 MEEPPSV----LDVEVFDFDGPFDQATSLGHAEINFLKHTSTELAD 399
P SV L + V D+D +GH E+ + E AD
Sbjct: 214 A--PESVENVGLSIAVVDYD-------CIGHNEVIGVCRVGPEAAD 250
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 18/106 (16%)
Query: 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDA 357
+LTV +++ NL + ++TG SDPYV + K R +S++ T +P +++ L FD
Sbjct: 153 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 212
Query: 358 MEEPPSV----LDVEVFDFDGPFDQATSLGHAEINFLKHTSTELAD 399
P SV L + V D+D +GH E+ + E AD
Sbjct: 213 A--PESVENVGLSIAVVDYD-------CIGHNEVIGVCRVGPEAAD 249
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 290 GSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTC-NGKTRTSSVQLQTCDPQ 348
GS VK G +L V +++ +L +++ +G SDP+ + N + +T +V + +P+
Sbjct: 4 GSSGDVKDVG---ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTV-YKNLNPE 59
Query: 349 WHDILEFDAMEEPPSVLDVEVFDFDG 374
W+ + F +++ VL+V VFD DG
Sbjct: 60 WNKVFTF-PIKDIHDVLEVTVFDEDG 84
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 290 GSDHG-------VKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVF------TCNGKTR 336
G+DH ++A D VL V + + NL + GLSDPYV K +
Sbjct: 153 GTDHTERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQK 212
Query: 337 TSSVQLQTCDPQWHDILEFDAME-EPPSVLDVEVFDFD----GPFDQATSLGHAEINFLK 391
T +++ + +P+W++ F E + L VE++D+D F + S G +E+
Sbjct: 213 TKTIK-SSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQ--- 268
Query: 392 HTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVETIKEYLTKMEKEVGKK 445
D W L L+Q ++ + E + G E +++ + + G K
Sbjct: 269 ---KAGVDGWFKL---LSQEEGEYFNVPVPPEGSEGNEELRQKFERAKIGQGTK 316
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 295 VKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVF------TCNGKTRTSSVQLQTCDPQ 348
++A D VL V + + NL + GLSDPYV K +T +++ + +P+
Sbjct: 24 IQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC-SLNPE 82
Query: 349 WHDILEFDAME-EPPSVLDVEVFDFD 373
W++ F E + L VE++D+D
Sbjct: 83 WNETFRFQLKESDKDRRLSVEIWDWD 108
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 303 VLTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRT--SSVQLQTCDPQWHDILEFDAME 359
LTV +++ L + + +G SDP+V ++ K + V+ + +P W++ F+
Sbjct: 27 TLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFP 86
Query: 360 EPPSV---LDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 405
V L ++V D+D F + +G I K T++ W L+
Sbjct: 87 YEKVVQRILYLQVLDYDR-FSRNDPIGEVSIPLNKVDLTQMQTFWKDLK 134
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 300 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTR--TSSVQLQTC----DPQWHDIL 353
D V+ V ++ G+ LA ++ G SDPYV T +SVQ +T +P+W++ +
Sbjct: 6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEI 65
Query: 354 EFDAMEEPPSVLDVEVFD 371
F + + +L EVFD
Sbjct: 66 LFRVLPQRHRIL-FEVFD 82
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 295 VKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTC------NGKTRTSSVQLQTCDPQ 348
+KA+ L V + + NL + GLSDPYV K +T +++ T +PQ
Sbjct: 10 LKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIR-STLNPQ 68
Query: 349 WHDILEFD-AMEEPPSVLDVEVFDFD 373
W++ F + L VE++D+D
Sbjct: 69 WNESFTFKLKPSDKDRRLSVEIWDWD 94
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 295 VKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTC------NGKTRTSSVQLQTCDPQ 348
+KA+ L V + + NL + GLSDPYV K +T +++ T +PQ
Sbjct: 9 LKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIR-STLNPQ 67
Query: 349 WHDILEFD-AMEEPPSVLDVEVFDFD 373
W++ F + L VE++D+D
Sbjct: 68 WNESFTFKLKPSDKDRRLSVEIWDWD 93
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 296 KAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEF 355
K G G L V ++E L + + G S+PY + ++ T+ T +P+W+ +F
Sbjct: 382 KTSGIGR-LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQF 440
Query: 356 DAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLK 391
+ VL + +FD D F LG EI K
Sbjct: 441 FIKDLYQDVLCLTLFDRDQ-FSPDDFLGRTEIPVAK 475
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 304 LTVALVEGVNLASSEMTGLSDPYVVFTC------NGKTRTSSVQLQTCDPQWHDILEFDA 357
L V + + NL + GLSDPYV K +T +++ T +PQW++ F
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIR-STLNPQWNESFTFKL 78
Query: 358 M-EEPPSVLDVEVFDFD----GPFDQATSLGHAEI 387
+ L VE++D+D F + S G +E+
Sbjct: 79 KPSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL 113
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 303 VLTVALVEGVNLASSEMTGLSDPYVVFTC----NGKTRTSSVQLQTC----DPQWHDILE 354
++ V ++ G+ LA ++ G SDPYV T NG +SVQ +T +P+W++ +
Sbjct: 21 IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGV--LTSVQTKTIKKSLNPKWNEEIL 78
Query: 355 FDAMEEPPSVLDVEVFD 371
F + +L EVFD
Sbjct: 79 FRVHPQQHRLL-FEVFD 94
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 304 LTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRTS--SVQLQTCDPQ--WHDILEFDAM 358
LTV +++ +L S+++GLSDPYV V + K R S ++ C P ++++ FD
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 359 EEPPSVLDVEVFDFD 373
E + VE D
Sbjct: 92 CESLEEISVEFLVLD 106
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 304 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSV-QLQTCDPQWHDILEFDAMEEPP 362
L V LV L ++ DPYV TC + + S+V + P+W++ F + E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIF-TVSEGT 70
Query: 363 SVLDVEVFDFD-GPFDQATSLGHAEI 387
+ L ++FD D G D A +G A I
Sbjct: 71 TELKAKIFDKDVGTEDDA--VGEATI 94
>pdb|1VT4|I Chain I, Structure Of The Drosophila Apoptosome
pdb|1VT4|J Chain J, Structure Of The Drosophila Apoptosome
pdb|1VT4|K Chain K, Structure Of The Drosophila Apoptosome
pdb|1VT4|L Chain L, Structure Of The Drosophila Apoptosome
pdb|1VT4|M Chain M, Structure Of The Drosophila Apoptosome
pdb|1VT4|N Chain N, Structure Of The Drosophila Apoptosome
pdb|1VT4|O Chain O, Structure Of The Drosophila Apoptosome
pdb|1VT4|P Chain P, Structure Of The Drosophila Apoptosome
pdb|3IZ8|A Chain A, Structure Of The Drosophila Apoptosome
pdb|3IZ8|B Chain B, Structure Of The Drosophila Apoptosome
pdb|3IZ8|C Chain C, Structure Of The Drosophila Apoptosome
pdb|3IZ8|D Chain D, Structure Of The Drosophila Apoptosome
pdb|3IZ8|E Chain E, Structure Of The Drosophila Apoptosome
pdb|3IZ8|F Chain F, Structure Of The Drosophila Apoptosome
pdb|3IZ8|G Chain G, Structure Of The Drosophila Apoptosome
pdb|3IZ8|H Chain H, Structure Of The Drosophila Apoptosome
Length = 1221
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 401 WVSLEGKLAQSAQSKVHLRIF---LENNNGVETIKEYLTKMEKEVGKKLNLRSPHRNSTF 457
WV+L+ L+ Q K+ +IF L+N N ET+ E L K+ ++ RS H ++
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 458 QKLFALPPE 466
++ ++ E
Sbjct: 225 LRIHSIQAE 233
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 32.7 bits (73), Expect = 0.71, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 20/97 (20%)
Query: 306 VALVEGVNLASSEMTGLSDPYVVFT--------CNGKTRTSSVQLQTCDPQWHDILEFDA 357
V + E NL + GLSDPYV KTRT T +P W++ F+
Sbjct: 24 VTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKA---TLNPVWNETFVFNL 80
Query: 358 MEEPPSV---LDVEVFDFD----GPFDQATSLGHAEI 387
+P V L VEV+D+D F A S G +E+
Sbjct: 81 --KPGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSEL 115
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 10/129 (7%)
Query: 304 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPS 363
+++ +V L + + TG SDPYV + + +P W + F+
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 364 VLDVEVFDFDGPFDQATS--LGHAEINFLKHTSTEL------ADMWVSLEGKLAQSAQS- 414
+ V V D D +FL T E+ D+W +L+ + +SA S
Sbjct: 79 I-KVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSG 137
Query: 415 KVHLRIFLE 423
+ L I +E
Sbjct: 138 AIRLHISVE 146
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 304 LTVALVEGVNLA-SSEMTGLSDPYV-VFTCNGKTR----TSSVQLQTCDPQWHDILEFDA 357
L V + E LA + E S+PYV + K+R +S++ T +P + + L +
Sbjct: 25 LVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY-- 82
Query: 358 MEEPPSVLDVEVFDFD----GPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQ 413
E P S+L F G F + T LG AEI + D + L GK++ ++
Sbjct: 83 -EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESE 141
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 11/115 (9%)
Query: 300 DGWVLTVALVEGVNLASSEMTGLSDPYVVF------TCNGKTRTSSVQLQTCDPQWHDIL 353
D L ++ L + GL+DPYV + + K RT +++ T +P W++ L
Sbjct: 27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLR-NTRNPVWNETL 85
Query: 354 EFDAMEEPP---SVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 405
++ + E L + V D D F +G + K + + + + LE
Sbjct: 86 QYHGITEEDMQRKTLRISVCDED-KFGHNEFIGETRFSLKKLKANQRKNFNICLE 139
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 11/115 (9%)
Query: 300 DGWVLTVALVEGVNLASSEMTGLSDPYVVF------TCNGKTRTSSVQLQTCDPQWHDIL 353
D L ++ L + GL+DPYV + + K RT +++ T +P W++ L
Sbjct: 25 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLR-NTRNPVWNETL 83
Query: 354 EFDAMEEPP---SVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 405
++ + E L + V D D F +G + K + + + + LE
Sbjct: 84 QYHGITEEDMQRKTLRISVCDED-KFGHNEFIGETRFSLKKLKANQRKNFNICLE 137
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 304 LTVALVEGVNLASSEMTGLSDPYV 327
LTV ++E NL ++ GLSDPYV
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYV 175
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 304 LTVALVEGVNLASSEMTGLSDPYV 327
LTV ++E NL ++ GLSDPYV
Sbjct: 19 LTVVILEAKNLKKMDVGGLSDPYV 42
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 304 LTVALVEGVNLASSEMTGLSDPYV 327
LTV ++E NL ++ GLSDPYV
Sbjct: 20 LTVVILEAKNLKKMDVGGLSDPYV 43
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 304 LTVALVEGVNLASSEMTGLSDPYV 327
LTV ++E NL ++ GLSDPYV
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYV 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,768,368
Number of Sequences: 62578
Number of extensions: 928528
Number of successful extensions: 1813
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1803
Number of HSP's gapped (non-prelim): 25
length of query: 790
length of database: 14,973,337
effective HSP length: 107
effective length of query: 683
effective length of database: 8,277,491
effective search space: 5653526353
effective search space used: 5653526353
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)