Query 003874
Match_columns 790
No_of_seqs 544 out of 2369
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 13:34:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1032 Uncharacterized conser 100.0 5.8E-31 1.3E-35 302.0 16.4 296 463-781 117-443 (590)
2 KOG1032 Uncharacterized conser 100.0 9.6E-29 2.1E-33 283.7 8.8 580 208-788 3-589 (590)
3 cd04016 C2_Tollip C2 domain pr 99.8 1.5E-20 3.2E-25 175.4 14.4 117 302-421 2-120 (121)
4 cd08682 C2_Rab11-FIP_classI C2 99.8 2.6E-19 5.6E-24 168.9 13.6 116 304-420 1-125 (126)
5 cd08376 C2B_MCTP_PRT C2 domain 99.8 6.6E-19 1.4E-23 163.5 15.4 115 303-423 1-115 (116)
6 cd04042 C2A_MCTP_PRT C2 domain 99.8 7.9E-19 1.7E-23 164.4 15.6 119 303-423 1-120 (121)
7 cd04019 C2C_MCTP_PRT_plant C2 99.8 7.8E-19 1.7E-23 170.4 14.6 126 303-429 1-138 (150)
8 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.9E-18 4E-23 162.3 13.9 114 303-418 1-125 (126)
9 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.6E-18 3.6E-23 163.7 13.2 120 303-423 1-126 (127)
10 cd08681 C2_fungal_Inn1p-like C 99.8 2E-18 4.4E-23 160.7 11.5 116 302-421 1-117 (118)
11 cd04036 C2_cPLA2 C2 domain pre 99.8 5.4E-18 1.2E-22 158.2 14.0 115 303-423 1-118 (119)
12 cd04024 C2A_Synaptotagmin-like 99.8 8.7E-18 1.9E-22 158.6 14.2 119 302-421 1-127 (128)
13 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1E-17 2.2E-22 156.4 13.9 114 302-421 1-120 (121)
14 cd08375 C2_Intersectin C2 doma 99.7 1.8E-17 3.9E-22 158.4 15.0 118 300-422 13-135 (136)
15 cd08395 C2C_Munc13 C2 domain t 99.7 1E-17 2.2E-22 156.0 12.7 103 303-407 1-113 (120)
16 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 1.5E-17 3.2E-22 155.8 13.7 116 304-421 2-120 (121)
17 KOG1030 Predicted Ca2+-depende 99.7 6.6E-18 1.4E-22 161.3 10.9 98 300-399 4-101 (168)
18 cd08378 C2B_MCTP_PRT_plant C2 99.7 1.4E-17 3.1E-22 155.9 12.7 114 304-423 2-120 (121)
19 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 2.5E-17 5.5E-22 154.6 13.5 117 303-420 1-122 (123)
20 cd08677 C2A_Synaptotagmin-13 C 99.7 1.3E-17 2.8E-22 153.6 10.2 104 297-404 9-118 (118)
21 cd08678 C2_C21orf25-like C2 do 99.7 4.9E-17 1.1E-21 153.4 14.3 116 304-423 1-120 (126)
22 cd08381 C2B_PI3K_class_II C2 d 99.7 1.8E-17 3.8E-22 155.5 11.1 102 301-404 12-121 (122)
23 cd08377 C2C_MCTP_PRT C2 domain 99.7 1.4E-16 3E-21 148.5 14.9 117 302-422 1-118 (119)
24 cd08400 C2_Ras_p21A1 C2 domain 99.7 1.4E-16 3.1E-21 150.2 15.1 117 302-423 4-123 (126)
25 cd04010 C2B_RasA3 C2 domain se 99.7 4E-17 8.6E-22 157.8 11.5 103 303-408 1-124 (148)
26 cd04028 C2B_RIM1alpha C2 domai 99.7 6.1E-17 1.3E-21 155.7 12.7 107 301-409 28-141 (146)
27 cd04043 C2_Munc13_fungal C2 do 99.7 1.2E-16 2.5E-21 150.6 14.3 118 302-426 1-124 (126)
28 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 9E-17 1.9E-21 152.9 13.3 118 303-422 1-132 (133)
29 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.3E-16 2.7E-21 149.5 13.8 116 304-421 2-120 (121)
30 cd04015 C2_plant_PLD C2 domain 99.7 2.4E-16 5.2E-21 154.5 15.4 119 301-422 6-157 (158)
31 cd04014 C2_PKC_epsilon C2 doma 99.7 2.5E-16 5.5E-21 149.7 14.9 115 301-424 3-130 (132)
32 cd08393 C2A_SLP-1_2 C2 domain 99.7 6.2E-17 1.4E-21 152.5 10.5 107 298-405 11-125 (125)
33 cd04050 C2B_Synaptotagmin-like 99.7 1.3E-16 2.9E-21 145.5 11.7 101 303-407 1-103 (105)
34 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.1E-16 2.5E-21 150.6 11.2 108 297-405 10-125 (125)
35 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.5E-16 3.2E-21 149.6 11.5 108 297-405 11-123 (124)
36 cd04027 C2B_Munc13 C2 domain s 99.7 3.1E-16 6.8E-21 148.1 13.4 115 303-420 2-127 (127)
37 cd08385 C2A_Synaptotagmin-1-5- 99.7 2.6E-16 5.5E-21 147.9 12.2 107 298-405 12-123 (124)
38 cd08373 C2A_Ferlin C2 domain f 99.7 5.8E-16 1.3E-20 146.2 14.4 117 308-427 2-120 (127)
39 cd04017 C2D_Ferlin C2 domain f 99.7 5.9E-16 1.3E-20 147.8 14.6 118 303-423 2-132 (135)
40 cd04046 C2_Calpain C2 domain p 99.7 9.6E-16 2.1E-20 144.6 15.5 118 301-423 2-122 (126)
41 cd08392 C2A_SLP-3 C2 domain fi 99.7 2.3E-16 5E-21 149.1 11.1 108 297-405 10-128 (128)
42 cd08688 C2_KIAA0528-like C2 do 99.7 3E-16 6.5E-21 144.4 10.7 102 304-406 1-109 (110)
43 cd04031 C2A_RIM1alpha C2 domai 99.7 5.6E-16 1.2E-20 145.7 11.5 106 298-405 12-125 (125)
44 cd04041 C2A_fungal C2 domain f 99.7 4E-16 8.7E-21 143.8 9.8 100 302-405 1-107 (111)
45 cd08680 C2_Kibra C2 domain fou 99.7 4.7E-16 1E-20 145.9 10.4 108 296-404 8-124 (124)
46 cd04030 C2C_KIAA1228 C2 domain 99.7 8.2E-16 1.8E-20 145.0 12.0 107 298-405 12-127 (127)
47 cd04039 C2_PSD C2 domain prese 99.6 8E-16 1.7E-20 141.0 11.2 93 302-395 1-98 (108)
48 cd08386 C2A_Synaptotagmin-7 C2 99.6 1.1E-15 2.3E-20 143.9 12.3 106 299-405 13-124 (125)
49 cd08394 C2A_Munc13 C2 domain f 99.6 1.4E-15 3E-20 141.5 12.6 99 302-407 2-102 (127)
50 cd08690 C2_Freud-1 C2 domain f 99.6 2.3E-15 4.9E-20 145.9 14.4 129 302-432 4-146 (155)
51 cd08388 C2A_Synaptotagmin-4-11 99.6 1.2E-15 2.6E-20 144.4 12.2 108 297-405 11-127 (128)
52 cd08685 C2_RGS-like C2 domain 99.6 7E-16 1.5E-20 144.0 10.3 103 300-404 10-119 (119)
53 cd08382 C2_Smurf-like C2 domai 99.6 1.7E-15 3.6E-20 142.4 12.2 114 304-420 2-122 (123)
54 cd08521 C2A_SLP C2 domain firs 99.6 1.1E-15 2.4E-20 143.2 10.7 106 298-404 10-123 (123)
55 cd08389 C2A_Synaptotagmin-14_1 99.6 1.6E-15 3.5E-20 142.6 11.4 108 297-406 11-124 (124)
56 cd08390 C2A_Synaptotagmin-15-1 99.6 2.3E-15 5E-20 141.1 12.2 109 297-406 9-123 (123)
57 cd04044 C2A_Tricalbin-like C2 99.6 3E-15 6.5E-20 140.3 12.9 117 302-422 2-122 (124)
58 cd04040 C2D_Tricalbin-like C2 99.6 4.3E-15 9.4E-20 137.5 12.9 112 304-417 1-113 (115)
59 cd04011 C2B_Ferlin C2 domain s 99.6 3.7E-15 8E-20 137.3 11.8 101 301-406 3-110 (111)
60 cd04018 C2C_Ferlin C2 domain t 99.6 3.6E-15 7.8E-20 144.5 11.8 103 304-407 2-126 (151)
61 cd04051 C2_SRC2_like C2 domain 99.6 2.3E-15 5.1E-20 141.6 10.2 114 303-418 1-125 (125)
62 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 2.2E-15 4.7E-20 148.3 10.3 107 300-407 25-139 (162)
63 cd04049 C2_putative_Elicitor-r 99.6 4.2E-15 9E-20 139.7 11.4 105 302-407 1-109 (124)
64 cd04045 C2C_Tricalbin-like C2 99.6 8.5E-15 1.8E-19 136.9 13.3 103 302-407 1-104 (120)
65 cd08675 C2B_RasGAP C2 domain s 99.6 4.1E-15 8.9E-20 142.3 10.9 103 304-408 1-122 (137)
66 KOG0696 Serine/threonine prote 99.6 5.4E-16 1.2E-20 164.8 4.5 125 280-406 151-288 (683)
67 cd04038 C2_ArfGAP C2 domain pr 99.6 7.7E-15 1.7E-19 141.5 11.6 91 302-395 2-92 (145)
68 cd08676 C2A_Munc13-like C2 dom 99.6 6.7E-15 1.5E-19 142.8 10.9 101 298-404 24-153 (153)
69 cd08406 C2B_Synaptotagmin-12 C 99.6 1.1E-14 2.4E-19 139.0 11.3 105 299-406 12-123 (136)
70 cd04032 C2_Perforin C2 domain 99.6 9.3E-15 2E-19 137.5 10.6 94 298-393 24-118 (127)
71 cd08384 C2B_Rabphilin_Doc2 C2 99.6 3.3E-15 7.2E-20 142.2 7.2 109 296-407 7-122 (133)
72 cd08407 C2B_Synaptotagmin-13 C 99.6 1.3E-14 2.8E-19 138.5 11.2 105 298-405 11-124 (138)
73 cd04013 C2_SynGAP_like C2 doma 99.5 7.2E-14 1.6E-18 134.1 14.0 116 302-423 11-139 (146)
74 cd08402 C2B_Synaptotagmin-1 C2 99.5 2.5E-14 5.4E-19 136.8 10.8 107 297-406 10-123 (136)
75 cd04021 C2_E3_ubiquitin_ligase 99.5 5.7E-14 1.2E-18 132.3 12.8 114 303-420 3-124 (125)
76 cd04037 C2E_Ferlin C2 domain f 99.5 2.6E-14 5.7E-19 134.4 10.3 90 303-393 1-92 (124)
77 cd08404 C2B_Synaptotagmin-4 C2 99.5 1E-14 2.2E-19 139.5 7.3 105 299-406 12-123 (136)
78 cd08691 C2_NEDL1-like C2 domai 99.5 9.2E-14 2E-18 132.6 13.8 114 303-420 2-136 (137)
79 cd08408 C2B_Synaptotagmin-14_1 99.5 3.7E-14 8.1E-19 135.8 10.6 108 297-406 10-125 (138)
80 cd08692 C2B_Tac2-N C2 domain s 99.5 5.5E-14 1.2E-18 132.7 11.5 107 296-404 8-121 (135)
81 cd00275 C2_PLC_like C2 domain 99.5 1.3E-13 2.9E-18 129.9 13.7 115 303-422 3-127 (128)
82 cd08405 C2B_Synaptotagmin-7 C2 99.5 5.2E-14 1.1E-18 134.5 10.7 106 298-406 11-123 (136)
83 cd08410 C2B_Synaptotagmin-17 C 99.5 4.7E-14 1E-18 134.7 10.3 109 297-407 9-124 (135)
84 cd04026 C2_PKC_alpha_gamma C2 99.5 6.1E-14 1.3E-18 133.1 10.8 104 301-406 12-121 (131)
85 cd04009 C2B_Munc13-like C2 dom 99.5 5.7E-14 1.2E-18 133.8 10.5 92 301-393 15-117 (133)
86 cd08383 C2A_RasGAP C2 domain ( 99.5 2.5E-13 5.3E-18 126.1 13.9 111 304-421 2-116 (117)
87 cd08403 C2B_Synaptotagmin-3-5- 99.5 6.8E-14 1.5E-18 133.4 10.4 105 299-406 11-122 (134)
88 cd04048 C2A_Copine C2 domain f 99.5 6.4E-14 1.4E-18 131.0 9.7 98 308-405 6-113 (120)
89 cd04052 C2B_Tricalbin-like C2 99.5 1.2E-13 2.6E-18 127.3 10.8 100 319-424 9-110 (111)
90 cd04035 C2A_Rabphilin_Doc2 C2 99.5 1.8E-13 4E-18 128.4 11.1 106 297-404 10-123 (123)
91 cd00276 C2B_Synaptotagmin C2 d 99.5 4.6E-14 9.9E-19 134.2 6.9 107 298-407 10-123 (134)
92 PLN03008 Phospholipase D delta 99.5 3.2E-13 6.9E-18 157.5 13.7 122 301-425 13-179 (868)
93 cd08409 C2B_Synaptotagmin-15 C 99.5 6.3E-14 1.4E-18 134.2 6.5 105 300-406 13-124 (137)
94 KOG1028 Ca2+-dependent phospho 99.4 6.4E-13 1.4E-17 149.4 13.5 173 297-476 162-341 (421)
95 PF02893 GRAM: GRAM domain; I 99.4 2.3E-13 5.1E-18 114.3 6.0 65 456-520 2-68 (69)
96 cd08686 C2_ABR C2 domain in th 99.4 2.3E-12 4.9E-17 118.5 12.9 94 304-405 1-108 (118)
97 PLN03200 cellulose synthase-in 99.4 1.1E-12 2.4E-17 166.2 11.8 118 299-422 1977-2099(2102)
98 KOG1011 Neurotransmitter relea 99.4 9.7E-13 2.1E-17 145.2 8.4 123 299-424 292-427 (1283)
99 cd04047 C2B_Copine C2 domain s 99.4 3.7E-12 8E-17 117.0 10.2 88 306-395 4-101 (110)
100 PF00168 C2: C2 domain; Inter 99.3 8.1E-12 1.8E-16 108.0 9.3 82 304-386 1-85 (85)
101 smart00568 GRAM domain in gluc 99.2 1E-11 2.2E-16 101.6 6.2 59 462-520 1-60 (61)
102 KOG1028 Ca2+-dependent phospho 99.2 7.1E-11 1.5E-15 133.0 10.5 141 247-391 239-393 (421)
103 cd00030 C2 C2 domain. The C2 d 99.2 1.7E-10 3.6E-15 101.7 10.3 100 304-404 1-102 (102)
104 COG5038 Ca2+-dependent lipid-b 99.1 1.7E-10 3.7E-15 136.8 10.3 122 300-422 1038-1160(1227)
105 smart00239 C2 Protein kinase C 99.1 4.8E-10 1E-14 99.3 10.0 93 304-397 2-97 (101)
106 cd08374 C2F_Ferlin C2 domain s 99.1 4.8E-10 1E-14 105.9 10.1 92 304-396 2-125 (133)
107 KOG1328 Synaptic vesicle prote 99.1 2.6E-11 5.6E-16 136.0 1.7 131 296-427 108-305 (1103)
108 KOG2059 Ras GTPase-activating 99.1 2.9E-10 6.3E-15 128.3 8.9 119 303-424 6-126 (800)
109 PLN02223 phosphoinositide phos 99.0 2.4E-09 5.2E-14 121.1 14.0 118 301-422 408-536 (537)
110 PLN02952 phosphoinositide phos 98.9 1.1E-08 2.3E-13 118.3 13.6 117 301-421 469-597 (599)
111 PLN02270 phospholipase D alpha 98.9 1.4E-08 3.1E-13 119.2 13.1 121 301-424 7-149 (808)
112 PLN02230 phosphoinositide phos 98.8 2.5E-08 5.4E-13 115.0 12.8 118 301-422 468-597 (598)
113 PLN02222 phosphoinositide phos 98.7 9.1E-08 2E-12 110.3 13.5 117 301-421 451-579 (581)
114 PLN02228 Phosphoinositide phos 98.7 1.4E-07 3E-12 108.5 13.0 119 302-424 431-562 (567)
115 KOG1031 Predicted Ca2+-depende 98.7 6E-08 1.3E-12 106.8 9.4 130 302-433 3-146 (1169)
116 KOG0169 Phosphoinositide-speci 98.7 8.1E-08 1.8E-12 110.8 10.7 117 303-423 617-744 (746)
117 KOG1328 Synaptic vesicle prote 98.7 9.5E-09 2.1E-13 115.9 3.1 97 297-394 942-1049(1103)
118 cd08689 C2_fungal_Pkc1p C2 dom 98.6 1.3E-07 2.8E-12 84.5 8.0 82 304-392 1-86 (109)
119 KOG1264 Phospholipase C [Lipid 98.5 2.1E-07 4.6E-12 106.3 9.3 102 301-407 1064-1172(1267)
120 COG5038 Ca2+-dependent lipid-b 98.5 2.9E-07 6.3E-12 110.0 10.7 92 300-393 434-528 (1227)
121 KOG2059 Ras GTPase-activating 98.3 5.8E-07 1.3E-11 102.2 6.0 118 303-422 132-275 (800)
122 PLN02352 phospholipase D epsil 98.1 1.5E-05 3.2E-10 94.1 12.0 115 300-424 8-131 (758)
123 KOG1326 Membrane-associated pr 98.1 1.7E-06 3.8E-11 101.7 3.7 91 300-391 611-703 (1105)
124 KOG0905 Phosphoinositide 3-kin 98.0 5E-06 1.1E-10 98.9 3.8 106 300-406 1522-1635(1639)
125 PLN02964 phosphatidylserine de 97.7 0.00012 2.7E-09 85.9 9.2 94 296-397 48-142 (644)
126 KOG1013 Synaptic vesicle prote 97.6 7E-05 1.5E-09 79.1 4.7 100 300-402 231-337 (362)
127 KOG3837 Uncharacterized conser 97.3 0.00022 4.7E-09 77.2 4.6 132 303-435 368-515 (523)
128 KOG1013 Synaptic vesicle prote 97.3 5.3E-05 1.2E-09 80.0 -0.7 97 300-397 91-195 (362)
129 KOG2060 Rab3 effector RIM1 and 97.2 0.00047 1E-08 74.1 6.1 107 300-408 267-381 (405)
130 KOG1011 Neurotransmitter relea 97.2 0.00075 1.6E-08 76.2 7.3 117 302-420 1125-1251(1283)
131 KOG4347 GTPase-activating prot 97.1 0.00033 7.1E-09 80.1 3.9 100 450-572 6-108 (671)
132 KOG1326 Membrane-associated pr 97.0 0.00019 4E-09 85.1 0.4 104 301-406 205-317 (1105)
133 KOG1327 Copine [Signal transdu 96.9 0.0013 2.9E-08 74.6 6.1 85 308-394 142-236 (529)
134 cd08683 C2_C2cd3 C2 domain fou 96.6 0.0031 6.8E-08 58.5 5.2 82 323-404 33-143 (143)
135 KOG1327 Copine [Signal transdu 96.5 0.0068 1.5E-07 69.0 8.2 160 336-503 43-220 (529)
136 PF12416 DUF3668: Cep120 prote 95.5 0.16 3.6E-06 55.7 12.7 121 304-427 2-136 (340)
137 PF10698 DUF2505: Protein of u 95.4 1.1 2.4E-05 43.9 17.3 147 623-779 4-158 (159)
138 PF15627 CEP76-C2: CEP76 C2 do 95.2 0.2 4.3E-06 48.7 10.8 124 301-425 8-152 (156)
139 KOG1265 Phospholipase C [Lipid 95.2 0.024 5.2E-07 66.9 5.4 111 301-423 702-823 (1189)
140 PF10698 DUF2505: Protein of u 95.1 0.68 1.5E-05 45.4 14.6 147 22-184 4-158 (159)
141 cd08684 C2A_Tac2-N C2 domain f 93.7 0.054 1.2E-06 47.0 2.7 95 305-403 2-102 (103)
142 PF14470 bPH_3: Bacterial PH d 93.4 0.8 1.7E-05 40.4 10.1 60 463-522 1-62 (96)
143 cd08398 C2_PI3K_class_I_alpha 92.8 0.58 1.3E-05 45.9 8.9 100 303-422 9-121 (158)
144 cd08693 C2_PI3K_class_I_beta_d 92.2 0.77 1.7E-05 45.8 9.1 70 303-374 9-87 (173)
145 PF10358 NT-C2: N-terminal C2 92.0 4.3 9.4E-05 38.6 13.8 118 302-426 7-138 (143)
146 cd08380 C2_PI3K_like C2 domain 90.2 1.4 2.9E-05 43.1 8.5 87 303-391 9-106 (156)
147 cd05018 CoxG Carbon monoxide d 90.1 16 0.00035 34.0 16.1 137 624-780 7-143 (144)
148 cd08397 C2_PI3K_class_III C2 d 90.0 0.94 2E-05 44.5 7.1 89 322-426 29-126 (159)
149 cd08687 C2_PKN-like C2 domain 88.6 4.9 0.00011 35.5 9.5 83 323-422 9-92 (98)
150 cd04012 C2A_PI3K_class_II C2 d 88.1 1.5 3.2E-05 43.6 7.1 89 302-391 8-118 (171)
151 cd08868 START_STARD1_3_like Ch 87.1 5.6 0.00012 40.7 10.9 145 21-183 52-207 (208)
152 KOG1452 Predicted Rho GTPase-a 86.8 1.6 3.4E-05 46.6 6.5 74 299-374 48-124 (442)
153 cd08876 START_1 Uncharacterize 86.6 25 0.00055 35.2 15.3 143 624-780 47-194 (195)
154 cd08399 C2_PI3K_class_I_gamma 83.9 11 0.00024 37.7 10.8 71 303-374 11-89 (178)
155 cd05018 CoxG Carbon monoxide d 82.7 37 0.0008 31.5 13.7 137 22-185 6-143 (144)
156 PF14844 PH_BEACH: PH domain a 82.3 0.97 2.1E-05 41.0 2.5 65 469-536 2-82 (106)
157 cd07821 PYR_PYL_RCAR_like Pyra 80.5 41 0.00089 30.8 13.1 105 623-748 6-112 (140)
158 cd08876 START_1 Uncharacterize 80.3 26 0.00056 35.1 12.3 143 18-177 42-190 (195)
159 cd08870 START_STARD2_7-like Li 79.5 24 0.00053 36.0 12.0 152 19-184 52-209 (209)
160 PF00792 PI3K_C2: Phosphoinosi 79.0 16 0.00035 34.9 9.8 74 337-426 23-104 (142)
161 cd08868 START_STARD1_3_like Ch 78.9 31 0.00068 35.2 12.5 119 623-750 53-180 (208)
162 smart00234 START in StAR and p 77.5 39 0.00086 34.0 12.8 79 100-184 120-203 (206)
163 cd08905 START_STARD1-like Chol 76.4 12 0.00026 38.5 8.6 149 20-182 52-207 (209)
164 PF11605 Vps36_ESCRT-II: Vacuo 76.4 5.1 0.00011 35.4 5.0 51 484-536 37-87 (89)
165 smart00142 PI3K_C2 Phosphoinos 75.4 20 0.00043 32.2 8.7 71 304-374 13-92 (100)
166 cd08903 START_STARD5-like Lipi 75.0 28 0.00061 35.7 10.9 153 19-183 48-207 (208)
167 PF14429 DOCK-C2: C2 domain in 71.8 14 0.00031 36.9 7.7 57 335-391 60-120 (184)
168 cd08871 START_STARD10-like Lip 70.8 1.3E+02 0.0029 30.9 15.9 146 625-781 54-205 (222)
169 cd07821 PYR_PYL_RCAR_like Pyra 70.5 29 0.00063 31.9 9.1 134 18-180 2-138 (140)
170 PF00407 Bet_v_1: Pathogenesis 67.7 87 0.0019 30.4 11.9 139 623-783 9-151 (151)
171 cd07823 SRPBCC_5 Ligand-bindin 67.6 1.1E+02 0.0024 28.8 16.0 137 624-780 5-144 (146)
172 cd08871 START_STARD10-like Lip 67.4 52 0.0011 33.9 11.0 146 23-186 53-205 (222)
173 cd07816 Bet_v1-like Ligand-bin 67.2 84 0.0018 30.1 11.7 120 17-155 1-120 (148)
174 PRK10724 hypothetical protein; 66.3 1.4E+02 0.0029 29.3 13.2 134 623-782 20-153 (158)
175 cd08904 START_STARD6-like Lipi 65.6 1.7E+02 0.0036 30.1 15.0 87 686-774 110-201 (204)
176 cd08694 C2_Dock-A C2 domains f 64.7 40 0.00087 34.3 9.0 40 334-373 53-94 (196)
177 cd08905 START_STARD1-like Chol 62.1 1.4E+02 0.003 30.6 12.8 143 622-773 53-203 (209)
178 cd08695 C2_Dock-B C2 domains f 61.8 37 0.0008 34.3 8.1 39 335-373 54-94 (189)
179 cd07823 SRPBCC_5 Ligand-bindin 61.5 38 0.00082 32.2 8.0 66 108-179 75-142 (146)
180 cd08869 START_RhoGAP C-termina 60.6 70 0.0015 32.4 10.2 121 20-158 47-175 (197)
181 cd08870 START_STARD2_7-like Li 60.5 2E+02 0.0043 29.3 14.8 147 624-778 56-208 (209)
182 PF06115 DUF956: Domain of unk 60.2 20 0.00044 33.1 5.4 39 480-519 20-58 (118)
183 cd08911 START_STARD7-like Lipi 59.4 1.2E+02 0.0025 31.0 11.7 151 20-183 48-206 (207)
184 PF11696 DUF3292: Protein of u 58.3 32 0.00069 40.9 7.9 95 472-577 520-634 (642)
185 PF08567 TFIIH_BTF_p62_N: TFII 57.9 39 0.00084 29.1 6.5 38 485-522 14-53 (79)
186 PF15625 CC2D2AN-C2: CC2D2A N- 57.8 37 0.0008 33.6 7.4 66 324-392 38-106 (168)
187 cd08906 START_STARD3-like Chol 57.6 74 0.0016 32.6 9.8 149 19-182 51-207 (209)
188 cd00177 START Lipid-binding ST 56.9 1.5E+02 0.0031 29.0 11.7 119 19-155 41-167 (193)
189 cd08910 START_STARD2-like Lipi 55.5 2.4E+02 0.0053 28.7 14.1 141 624-777 55-205 (207)
190 cd08874 START_STARD9-like C-te 54.1 2.6E+02 0.0057 28.6 13.6 129 11-153 40-176 (205)
191 cd08861 OtcD1_ARO-CYC_like N-t 52.7 1.9E+02 0.0042 26.7 12.2 110 624-752 5-115 (142)
192 PF01852 START: START domain; 52.1 1.6E+02 0.0035 29.4 11.3 81 100-186 120-205 (206)
193 cd00177 START Lipid-binding ST 51.9 2.4E+02 0.0051 27.5 14.1 121 623-751 44-168 (193)
194 cd07825 SRPBCC_7 Ligand-bindin 51.2 1.6E+02 0.0035 27.3 10.5 53 122-181 89-143 (144)
195 KOG1329 Phospholipase D1 [Lipi 49.7 23 0.00049 43.4 5.1 102 323-426 138-243 (887)
196 cd08904 START_STARD6-like Lipi 49.6 1.1E+02 0.0023 31.5 9.4 150 16-180 44-202 (204)
197 cd07826 SRPBCC_CalC_Aha1-like_ 47.1 1.7E+02 0.0036 27.7 9.9 139 19-182 2-141 (142)
198 KOG0694 Serine/threonine prote 46.3 8.1 0.00017 45.8 0.7 97 322-427 27-125 (694)
199 cd08910 START_STARD2-like Lipi 45.9 1.9E+02 0.0042 29.5 10.7 146 19-183 51-206 (207)
200 cd08896 SRPBCC_CalC_Aha1-like_ 45.9 1.7E+02 0.0036 27.7 9.7 30 19-49 2-31 (146)
201 cd08679 C2_DOCK180_related C2 44.2 48 0.001 33.0 5.8 55 335-390 54-114 (178)
202 cd01201 Neurobeachin Neurobeac 44.0 28 0.00062 31.8 3.6 66 468-536 2-82 (108)
203 PF11618 DUF3250: Protein of u 43.7 85 0.0018 28.7 6.8 86 333-422 10-104 (107)
204 PF04707 PRELI: PRELI-like fam 43.2 3.2E+02 0.007 26.6 12.7 71 711-781 81-152 (157)
205 cd08906 START_STARD3-like Chol 42.0 4E+02 0.0086 27.3 13.3 143 623-776 54-206 (209)
206 cd08908 START_STARD12-like C-t 41.2 1.3E+02 0.0028 30.9 8.4 119 19-155 54-177 (204)
207 smart00234 START in StAR and p 40.7 3.8E+02 0.0083 26.7 14.1 146 624-779 51-203 (206)
208 cd08869 START_RhoGAP C-termina 39.6 3.5E+02 0.0077 27.3 11.4 47 701-750 119-170 (197)
209 PF07162 B9-C2: Ciliary basal 39.3 3E+02 0.0065 27.1 10.5 77 307-390 7-102 (168)
210 smart00683 DM16 Repeats in sea 39.0 1E+02 0.0022 24.7 5.6 35 484-519 20-54 (55)
211 cd08894 SRPBCC_CalC_Aha1-like_ 38.5 3.3E+02 0.0072 25.3 12.6 134 622-780 4-137 (139)
212 cd08907 START_STARD8-like C-te 38.3 2.2E+02 0.0047 29.2 9.3 112 41-158 65-183 (205)
213 cd07826 SRPBCC_CalC_Aha1-like_ 37.5 3.5E+02 0.0077 25.4 12.9 137 622-781 4-141 (142)
214 cd07824 SRPBCC_6 Ligand-bindin 36.9 3.6E+02 0.0078 25.3 15.0 123 622-763 5-133 (146)
215 cd08913 START_STARD14-like Lip 36.6 2.4E+02 0.0051 29.8 9.7 112 20-146 84-203 (240)
216 cd08696 C2_Dock-C C2 domains f 36.0 80 0.0017 31.7 5.8 41 334-374 54-96 (179)
217 PF10604 Polyketide_cyc2: Poly 35.9 3.3E+02 0.0072 24.6 12.7 101 623-747 7-108 (139)
218 COG4687 Uncharacterized protei 34.9 48 0.001 30.3 3.6 36 483-519 23-58 (122)
219 PF12068 DUF3548: Domain of un 32.8 49 0.0011 34.1 3.8 36 505-543 112-147 (213)
220 cd08909 START_STARD13-like C-t 32.3 3.3E+02 0.0073 27.9 9.8 111 42-158 66-183 (205)
221 cd08697 C2_Dock-D C2 domains f 31.9 1.3E+02 0.0029 30.3 6.7 40 334-373 56-97 (185)
222 cd08896 SRPBCC_CalC_Aha1-like_ 29.9 4.7E+02 0.01 24.5 13.5 142 621-781 3-145 (146)
223 PF11687 DUF3284: Domain of un 29.8 4.5E+02 0.0098 24.3 9.7 99 21-151 3-101 (120)
224 cd07818 SRPBCC_1 Ligand-bindin 29.3 4.7E+02 0.01 24.3 11.9 138 623-777 7-145 (150)
225 cd07817 SRPBCC_8 Ligand-bindin 29.1 4.4E+02 0.0095 23.9 12.4 26 624-649 6-31 (139)
226 cd08877 START_2 Uncharacterize 28.4 6.4E+02 0.014 25.6 11.8 129 623-762 51-201 (215)
227 PF01852 START: START domain; 27.5 6.2E+02 0.013 25.1 13.7 80 697-779 119-203 (206)
228 PF00407 Bet_v_1: Pathogenesis 26.5 3.8E+02 0.0083 25.9 8.7 120 16-155 3-123 (151)
229 cd08903 START_STARD5-like Lipi 26.3 7E+02 0.015 25.3 15.5 78 698-776 123-205 (208)
230 PTZ00447 apical membrane antig 25.4 5E+02 0.011 28.7 9.7 108 303-420 59-170 (508)
231 PF06240 COXG: Carbon monoxide 24.4 5.3E+02 0.012 24.2 9.2 73 100-181 65-139 (140)
232 cd08891 SRPBCC_CalC Ligand-bin 23.7 3.7E+02 0.008 25.3 8.1 141 19-183 2-149 (149)
233 cd08874 START_STARD9-like C-te 23.7 8E+02 0.017 25.1 12.7 118 623-748 50-176 (205)
234 cd08908 START_STARD12-like C-t 23.7 8E+02 0.017 25.1 11.7 117 623-751 57-178 (204)
235 cd08894 SRPBCC_CalC_Aha1-like_ 23.5 5.7E+02 0.012 23.7 9.2 135 19-182 2-138 (139)
236 cd08907 START_STARD8-like C-te 22.9 5.7E+02 0.012 26.3 9.3 54 696-751 123-179 (205)
237 cd08902 START_STARD4-like Lipi 22.9 7E+02 0.015 25.6 9.9 74 102-181 124-201 (202)
238 cd08867 START_STARD4_5_6-like 22.8 7.9E+02 0.017 24.7 11.0 147 19-179 48-203 (206)
239 cd08877 START_2 Uncharacterize 20.4 9E+02 0.02 24.5 11.6 146 19-181 48-212 (215)
240 cd07822 SRPBCC_4 Ligand-bindin 20.4 6.3E+02 0.014 22.7 13.7 135 623-779 5-139 (141)
241 cd08913 START_STARD14-like Lip 20.3 1E+03 0.022 25.0 11.5 109 623-741 86-203 (240)
No 1
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.97 E-value=5.8e-31 Score=301.98 Aligned_cols=296 Identities=21% Similarity=0.313 Sum_probs=216.8
Q ss_pred CCCCcccccceecccccccccCceEEEeccEEEEEeccCCCeEEEEEecccceeeEEccccccccCCCcEEEEEEecCCC
Q 003874 463 LPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGL 542 (790)
Q Consensus 463 lp~~E~l~~~f~C~l~~~i~~~Grlyis~~~icF~s~~~g~~t~~~i~~~dI~~I~k~~~~~~~~~~~~i~i~l~~~~gl 542 (790)
+|+++.|+.+++|++.|.+.+|||||++..++|||+++|||.++.+||+++|.-|+|+. ++|+
T Consensus 117 ~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~-----------------tag~ 179 (590)
T KOG1032|consen 117 VPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTK-----------------TAGI 179 (590)
T ss_pred CCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhh-----------------hccC
Confidence 88999999999999999999999999999999999999999999999999999999977 3678
Q ss_pred CCCCCceeccCCCceEEEEeeccccchhhHHHHHHHhcc---CCChhhhhhhc---cccccccc----cccccC---CCC
Q 003874 543 DARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSR---TLTAYQKEQIA---EEQQVQEE----MSTAAD---RGS 609 (790)
Q Consensus 543 ~~~~~~~~~~~~~~~k~~F~sf~~rd~~~~~i~~~w~~~---~ls~~~~~~~~---~~~s~~~~----~~~~e~---s~~ 609 (790)
+||++.|++ +..+|+|+||.+||.+|.+|..+-+.- +.++....... +++...+. ....++ +.+
T Consensus 180 fpn~i~i~t---~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~s 256 (590)
T KOG1032|consen 180 FPNAIEITT---GTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNVDNSQSPSALQNS 256 (590)
T ss_pred CCcceEEec---CCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccccccccCCCccccccc
Confidence 888877773 346899999999999999764333221 11111111110 00000000 000000 000
Q ss_pred C-CCCCC-----------ccccceeccccCCCHHHHhh-hccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEe
Q 003874 610 V-PNFED-----------AKMSKVYNAELPISVKALME-MFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF 676 (790)
Q Consensus 610 ~-~~~~d-----------~~~~~v~~~~~p~s~~~lf~-lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~ 676 (790)
+ ...++ ..+.-+.+..+.+++..+|+ ||++..|+..+.+.++..+++..+|.....+...|.++|+.
T Consensus 257 ~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~~~~r~~~y~~ 336 (590)
T KOG1032|consen 257 FDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSGILLRTLSYTK 336 (590)
T ss_pred cCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCccceeEeccCCc
Confidence 0 00000 01222334567899999999 99999999999999999999999999877789999999996
Q ss_pred --cccccCCCceeceEEEEeecCCCCcEEEE-EEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccch
Q 003874 677 --NRHVSIFGGEVTCTQQKSPLASGEGWIVN-EVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKF 753 (790)
Q Consensus 677 --n~~i~~~~~~vt~~Q~~~~~~~~~~~vv~-~~~t~~dVPygd~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~ 753 (790)
..+++|+.+.+..+|........+++.|. ++.| ++||||++|.|++||+|+|.. .+.|+++|+++|.|.|++|.
T Consensus 337 ~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~-~~vps~~~f~v~~~y~i~~~~--~~~~~l~v~~~V~~~~~sw~ 413 (590)
T KOG1032|consen 337 GLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLT-PDVPSGDSFYVKTRYLISRAG--SNSCKLKVSTSVEWTKSSWD 413 (590)
T ss_pred cCCCcCCCccccccceeeEEeccchhhhhhhheecc-CCccccceeeeeEEEEEEecC--CcceeecceeEEEeccCchh
Confidence 56677766666666754444444445555 6666 999999999999999999998 69999999999999999999
Q ss_pred hhhhhhhhH--HhHHHHHHHHHHHHHHHHH
Q 003874 754 QQRITQNIT--EKFTHRLKEMIELVEREIL 781 (790)
Q Consensus 754 K~~Iek~~~--~g~~~~~k~~~~~~~k~v~ 781 (790)
+.+++.++. +.+-+.++.++...++..+
T Consensus 414 ~~~~~~~~~~~k~lv~~~~~~~~~~e~~~~ 443 (590)
T KOG1032|consen 414 VPVSEIGSNTLKDLVEILEKLLENGEELAK 443 (590)
T ss_pred hccccccccchhhHHHHHHHHHhccHHHHH
Confidence 888888775 3444444444443333333
No 2
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.95 E-value=9.6e-29 Score=283.74 Aligned_cols=580 Identities=27% Similarity=0.332 Sum_probs=457.5
Q ss_pred ccchhhhhccccceeEeehhhHHHHhhhheeecCCCCCCCccccCCCCCCcccceeeeeeeeeehhhhhhhhhHhHhhhh
Q 003874 208 QSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARL 287 (790)
Q Consensus 208 ~~~~~~~~~~~~n~~vi~~~~~~~~vl~~~~l~~p~~~~~l~~~gl~l~d~~g~~~v~~~lvl~~~~~~~~~~~~~~~~~ 287 (790)
..+|+....++.+..++......+++-+++-.+.+...++..+-|+++|+-.+...-...++....|......++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~~~~~n~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~k~ 82 (590)
T KOG1032|consen 3 HMQQKSESPKFAKVSVLLSSPLGISVDVAMNVEESAKIQGFPFLGLNLPDVSGSLFSSKVISSDLERSSDRVDSFASAKL 82 (590)
T ss_pred cccccccccchhhhhcccccccccccceeccccccccccCcccccCCchhhcccccCCcccccccccccccccccccccc
Confidence 45678888999999999887777999999999999999999999999999999888776555555444444444455554
Q ss_pred ccCCCCCccccCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEE
Q 003874 288 RKGSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDV 367 (790)
Q Consensus 288 ~~~~d~~~~~~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v 367 (790)
..+...+.+....++......+.+.++.....++.++||..+.+....+...+.....+|.|++.+.|+....+-....|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~v 162 (590)
T KOG1032|consen 83 HKGGLKGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVV 162 (590)
T ss_pred CCCCCCcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeE
Confidence 45556667777778888888888888887777888999999999888888889999999999999999976666677778
Q ss_pred EEEeeCCCCCCCCccccEEEeceecCCCCceeEEEEccccccCcCCceeEEEEEEecCCCcchhhhhhhhhhhhhccc--
Q 003874 368 EVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVETIKEYLTKMEKEVGKK-- 445 (790)
Q Consensus 368 ~V~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~~~G~l~L~i~l~~~~~~~~l~~~l~kleke~g~k-- 445 (790)
..++++..+++..-.|.+...+.-- .......|.++.++.+..+.-+++++..+..++.+.....++...+.++..+
T Consensus 163 Ipf~eI~~ikk~~tag~fpn~i~i~-t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~ 241 (590)
T KOG1032|consen 163 IPFDEITLIKKTKTAGIFPNAIEIT-TGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQ 241 (590)
T ss_pred EeeeeeeeeehhhhccCCCcceEEe-cCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccc
Confidence 8888877556666677766655544 5667789999999887766667888888888888888888888888887766
Q ss_pred ccccCCCCCccccccccCCCCcccccceecccccccccCceEEEeccEEEEEeccCCCeEEEEEecccceeeEEcccccc
Q 003874 446 LNLRSPHRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLA 525 (790)
Q Consensus 446 ~~~~s~~k~~~f~~lF~lp~~E~l~~~f~C~l~~~i~~~Grlyis~~~icF~s~~~g~~t~~~i~~~dI~~I~k~~~~~~ 525 (790)
-....++.+..+...|++|.+|.+..+++|.+.+..+++|+++++....+|++.+||..+++...|+|++.++..+.+..
T Consensus 242 ~~~~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~ 321 (590)
T KOG1032|consen 242 GNVDNSQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWK 321 (590)
T ss_pred cccccCCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeecccccccccccccccc
Confidence 35667789999999999999999999999999999999999999999999999999999999999999999998876543
Q ss_pred ccCCCcEEEEEEecCCCCCCCCceeccCCCceEEEEeeccc-cchhhHHHHHHHhccCCChhhhhhhcccccccc-cccc
Q 003874 526 TVGSPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVS-FNDASRTIMALWRSRTLTAYQKEQIAEEQQVQE-EMST 603 (790)
Q Consensus 526 ~~~~~~i~i~l~~~~gl~~~~~~~~~~~~~~~k~~F~sf~~-rd~~~~~i~~~w~~~~ls~~~~~~~~~~~s~~~-~~~~ 603 (790)
..+.+.....+..+.++.+.++.++++.++...++|..+.+ .....++++..|............+........ .-..
T Consensus 322 ~~~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v 401 (590)
T KOG1032|consen 322 GPRSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKV 401 (590)
T ss_pred CCCccceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeecc
Confidence 33323355566667899999999999988988898888776 444444555545444333333323322211000 0000
Q ss_pred ccCCCCCCCCCCccccceeccccCCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEe--ccccc
Q 003874 604 AADRGSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF--NRHVS 681 (790)
Q Consensus 604 ~e~s~~~~~~~d~~~~~v~~~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~--n~~i~ 681 (790)
+....-.-...+..+.++.....++.++.+.++|.+.+-...-+++.++..+.-++|+...+++.+|..+|+- +++++
T Consensus 402 ~~~V~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~i~ 481 (590)
T KOG1032|consen 402 STSVEWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEELAKNQEKEDELTYEGSPWEVEKPGGTVRQLSYKEVWNKPIS 481 (590)
T ss_pred eeEEEeccCchhhccccccccchhhHHHHHHHHHhccHHHHHhhcccccccccCCCccccCCCceeeeeccccccccccc
Confidence 1100001112334566776666677777877789888888888888888888888999778899999999997 79999
Q ss_pred CCCceeceEEEEeecCCCCcEEEEEEEecCCCCCCCceEEEEEEE-EEecCCCCCccEEEEEEEEEEecccchhhhhhhh
Q 003874 682 IFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYE-IEKSPLAHNACKCAIYIGISWLKSTKFQQRITQN 760 (790)
Q Consensus 682 ~~~~~vt~~Q~~~~~~~~~~~vv~~~~t~~dVPygd~F~v~~ry~-i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~ 760 (790)
+....++..|+.........|++++++.+|+||||++|.|+.||. ..........+++.++..|.|+|...++....+.
T Consensus 482 ~~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~k~ 561 (590)
T KOG1032|consen 482 PDKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYREALDETSKVKTTLVWVSFRIEWLKDIKMEARKIKQ 561 (590)
T ss_pred cccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhhhhhcccchhhhhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 998999999998888888999999999999999999999999994 3333444678888889999999999999999999
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhccCCCC
Q 003874 761 ITEKFTHRLKEMIELVEREILFATQQDA 788 (790)
Q Consensus 761 ~~~g~~~~~k~~~~~~~k~v~~~~~~~~ 788 (790)
++....+..+.++.++++.-..++..+.
T Consensus 562 ~~r~~~~~l~~~~~~l~~~~~~~~~~d~ 589 (590)
T KOG1032|consen 562 ILRNDQDLLEVLFSLLEKLSQSNSQLDQ 589 (590)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 9999999999999999999887776653
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=1.5e-20 Score=175.39 Aligned_cols=117 Identities=18% Similarity=0.302 Sum_probs=105.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccC-CCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCC
Q 003874 302 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQ-TCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 380 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~-tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 380 (790)
|.|.|+|++|++|+..+ .|.+||||++.+++++++|+++.+ +.||.|||+|.|.+. +....|.|+|||+|. +++|+
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~-~~~~~l~~~V~d~d~-~~~dd 78 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLP-EGVDSIYIEIFDERA-FTMDE 78 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEec-CCCcEEEEEEEeCCC-CcCCc
Confidence 68999999999998877 799999999999999999999865 899999999999984 445789999999999 89999
Q ss_pred ccccEEEece-ecCCCCceeEEEEccccccCcCCceeEEEEE
Q 003874 381 SLGHAEINFL-KHTSTELADMWVSLEGKLAQSAQSKVHLRIF 421 (790)
Q Consensus 381 ~LG~~~i~L~-~l~~~~~~~~w~~L~~k~~~~~~G~l~L~i~ 421 (790)
+||++.+++. .+..++..+.|++|.++.+....|+|||.+.
T Consensus 79 ~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~ 120 (121)
T cd04016 79 RIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFS 120 (121)
T ss_pred eEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEe
Confidence 9999999996 5777777899999998777778899999875
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.81 E-value=2.6e-19 Score=168.92 Aligned_cols=116 Identities=19% Similarity=0.345 Sum_probs=102.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeec-----CCCCeEEEEEEeeCCCCCC
Q 003874 304 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAME-----EPPSVLDVEVFDFDGPFDQ 378 (790)
Q Consensus 304 L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~-----~~~~~L~v~V~D~d~~~~~ 378 (790)
++|+|++|+||++++..|.+||||++.+++.+++|+++++++||.|||+|.|.+.. .....|.|+|||++. +++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~-~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL-LGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-cCC
Confidence 57999999999999999999999999999999999999999999999999999855 246789999999998 889
Q ss_pred CCccccEEEeceecC--CCCceeEEEEcccccc--CcCCceeEEEE
Q 003874 379 ATSLGHAEINFLKHT--STELADMWVSLEGKLA--QSAQSKVHLRI 420 (790)
Q Consensus 379 dd~LG~~~i~L~~l~--~~~~~~~w~~L~~k~~--~~~~G~l~L~i 420 (790)
|++||++.+++..+. .+...+.||+|.++.+ ....|+|+|++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 999999999999986 5667789999986543 23469999876
No 5
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.80 E-value=6.6e-19 Score=163.49 Aligned_cols=115 Identities=30% Similarity=0.505 Sum_probs=105.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCcc
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 382 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~L 382 (790)
+|+|+|++|+||++.+..|.+||||++++++++++|+++++++||.|||+|.|.+.......|.|+|||++. ++++++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~-~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDT-GKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCC-CCCCCeE
Confidence 479999999999999988999999999999999999999999999999999999865557899999999998 7899999
Q ss_pred ccEEEeceecCCCCceeEEEEccccccCcCCceeEEEEEEe
Q 003874 383 GHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 423 (790)
Q Consensus 383 G~~~i~L~~l~~~~~~~~w~~L~~k~~~~~~G~l~L~i~l~ 423 (790)
|++.+++.++..+...+.|++|.+ .+|+|++.+.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~-----~~G~~~~~~~~~ 115 (116)
T cd08376 80 GRCEIDLSALPREQTHSLELELED-----GEGSLLLLLTLT 115 (116)
T ss_pred EEEEEeHHHCCCCCceEEEEEccC-----CCcEEEEEEEec
Confidence 999999999988889999999986 259999988654
No 6
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=7.9e-19 Score=164.36 Aligned_cols=119 Identities=25% Similarity=0.389 Sum_probs=107.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCc
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 381 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~-~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 381 (790)
+|+|+|++|+||+..|..|.+||||++.+++ ..++|+++.+++||.|||.|.|.+ ......|.|+|||++. +++|++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v-~~~~~~l~~~v~D~d~-~~~~~~ 78 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPI-EDVTQPLYIKVFDYDR-GLTDDF 78 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEe-cCCCCeEEEEEEeCCC-CCCCcc
Confidence 4899999999999999999999999999987 578999999999999999999997 4456889999999999 789999
Q ss_pred cccEEEeceecCCCCceeEEEEccccccCcCCceeEEEEEEe
Q 003874 382 LGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 423 (790)
Q Consensus 382 LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~~~G~l~L~i~l~ 423 (790)
||++.+++..+..+...+.|++|.++.+....|.|+|.+.+.
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 999999999998888899999998766555789999999774
No 7
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=7.8e-19 Score=170.40 Aligned_cols=126 Identities=24% Similarity=0.328 Sum_probs=108.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccC-CCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCc
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQ-TCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 381 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~-tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 381 (790)
.|+|+|++|+||++++..|.+||||++.+++++.+|+++.+ ++||.|||.|.|.+..+....|.|+|||++. .++|++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~-~~~dd~ 79 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVG-PNKDEP 79 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecC-CCCCCe
Confidence 38999999999999999999999999999999999999976 6999999999999855455789999999998 788999
Q ss_pred cccEEEeceecCCC----CceeEEEEcccccc-------CcCCceeEEEEEEecCCCcc
Q 003874 382 LGHAEINFLKHTST----ELADMWVSLEGKLA-------QSAQSKVHLRIFLENNNGVE 429 (790)
Q Consensus 382 LG~~~i~L~~l~~~----~~~~~w~~L~~k~~-------~~~~G~l~L~i~l~~~~~~~ 429 (790)
||++.++|..+..+ ...+.||+|.+..+ ...+|+|||++.+..+....
T Consensus 80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~ 138 (150)
T cd04019 80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVL 138 (150)
T ss_pred EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEe
Confidence 99999999998543 45689999987643 34579999999998665543
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=1.9e-18 Score=162.33 Aligned_cols=114 Identities=18% Similarity=0.272 Sum_probs=99.9
Q ss_pred EEEEEEEEeec---CCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCC--
Q 003874 303 VLTVALVEGVN---LASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD-- 377 (790)
Q Consensus 303 ~L~V~vl~A~~---L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~-- 377 (790)
.|.|+|++|+| |+++|..|.+||||++++++++.||+++++++||.|||+|.|.+. ++...|.|+|||++. ++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~-~~~~~l~v~V~d~d~-~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVY-DPCTVLTVGVFDNSQ-SHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEec-CCCCEEEEEEEECCC-cccc
Confidence 38999999999 889999999999999999999999999999999999999999984 455689999999987 63
Q ss_pred ----CCCccccEEEeceecCCCCceeEEEEccccc--cCcCCceeEE
Q 003874 378 ----QATSLGHAEINFLKHTSTELADMWVSLEGKL--AQSAQSKVHL 418 (790)
Q Consensus 378 ----~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~--~~~~~G~l~L 418 (790)
+|++||++.+++..+..+...+.||+|.... +....|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 8999999999999998888889999998532 2335677764
No 9
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=1.6e-18 Score=163.65 Aligned_cols=120 Identities=20% Similarity=0.360 Sum_probs=104.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCC---CCeEEEEEEeeCCCCC-C
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEP---PSVLDVEVFDFDGPFD-Q 378 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~---~~~L~v~V~D~d~~~~-~ 378 (790)
.|+|+|++|++|++.+..|.+||||++.+++++++|+++.+++||.|||.|.|.+.... ...|.|+|||.+. ++ +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~-~~~~ 79 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR-SGRR 79 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC-CcCC
Confidence 38999999999999998899999999999999999999999999999999999985322 3579999999998 66 8
Q ss_pred CCccccEEEeceecC-CCCceeEEEEccccc-cCcCCceeEEEEEEe
Q 003874 379 ATSLGHAEINFLKHT-STELADMWVSLEGKL-AQSAQSKVHLRIFLE 423 (790)
Q Consensus 379 dd~LG~~~i~L~~l~-~~~~~~~w~~L~~k~-~~~~~G~l~L~i~l~ 423 (790)
+++||++.+++..+. .+.....||+|+.+. .....|+|+|+++++
T Consensus 80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 999999999999986 567778999998653 223579999999875
No 10
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.77 E-value=2e-18 Score=160.69 Aligned_cols=116 Identities=25% Similarity=0.400 Sum_probs=102.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeeccc-CCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCC
Q 003874 302 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQL-QTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 380 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~-~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 380 (790)
|.|+|+|++|+||+..+..|.+||||++.+++.+++|+++. +++||.|||.|.|.+..+..+.|.|+|||++. .+ |+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-~~-~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDK-RK-PD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC-CC-Cc
Confidence 57999999999999999999999999999999999999875 57999999999999866667889999999998 55 89
Q ss_pred ccccEEEeceecCCCCceeEEEEccccccCcCCceeEEEEE
Q 003874 381 SLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIF 421 (790)
Q Consensus 381 ~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~~~G~l~L~i~ 421 (790)
+||++.+++.++..+...+.|++|..+. ...|+|+|++.
T Consensus 79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~--~~~G~i~l~l~ 117 (118)
T cd08681 79 LIGDTEVDLSPALKEGEFDDWYELTLKG--RYAGEVYLELT 117 (118)
T ss_pred ceEEEEEecHHHhhcCCCCCcEEeccCC--cEeeEEEEEEE
Confidence 9999999999987676778999998643 35789999875
No 11
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.77 E-value=5.4e-18 Score=158.23 Aligned_cols=115 Identities=21% Similarity=0.355 Sum_probs=102.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCC
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 379 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~---~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~d 379 (790)
.|+|+|++|+||+..+..|.+||||++.++ ..+++|++++++.||.|||+|.|.+..+....|.|+|||+|. + +|
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~-~-~~ 78 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDY-V-MD 78 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCC-C-CC
Confidence 378999999999999988999999999985 357899999999999999999999866556689999999998 7 89
Q ss_pred CccccEEEeceecCCCCceeEEEEccccccCcCCceeEEEEEEe
Q 003874 380 TSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 423 (790)
Q Consensus 380 d~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~~~G~l~L~i~l~ 423 (790)
++||++.+++..+..+...+.|++|.+. ..|+|++++.|+
T Consensus 79 ~~iG~~~~~l~~l~~g~~~~~~~~L~~~----~~g~l~~~~~~~ 118 (119)
T cd04036 79 DHLGTVLFDVSKLKLGEKVRVTFSLNPQ----GKEELEVEFLLE 118 (119)
T ss_pred cccEEEEEEHHHCCCCCcEEEEEECCCC----CCceEEEEEEee
Confidence 9999999999999989999999999863 478999998764
No 12
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.76 E-value=8.7e-18 Score=158.59 Aligned_cols=119 Identities=25% Similarity=0.445 Sum_probs=104.5
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCC
Q 003874 302 WVLTVALVEGVNLASSEM--TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 379 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~--~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~d 379 (790)
|.|+|+|++|+||++.+. .+.+||||++.++.++++|++++++.||.|||.|.|.+.......|.|+|||++. .+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~-~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDR-FAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCC-CCCC
Confidence 689999999999999998 8899999999999999999999999999999999999866567899999999998 7889
Q ss_pred CccccEEEeceecC---CCCceeEEEEcccccc---CcCCceeEEEEE
Q 003874 380 TSLGHAEINFLKHT---STELADMWVSLEGKLA---QSAQSKVHLRIF 421 (790)
Q Consensus 380 d~LG~~~i~L~~l~---~~~~~~~w~~L~~k~~---~~~~G~l~L~i~ 421 (790)
++||++.+++..+. .....+.||+|.++.. ....|+|+|++.
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 99999999999986 3345689999987632 235899999873
No 13
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.75 E-value=1e-17 Score=156.38 Aligned_cols=114 Identities=28% Similarity=0.490 Sum_probs=102.5
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCC
Q 003874 302 WVLTVALVEGVNLASSEM------TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 375 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~------~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~ 375 (790)
|+|+|+|++|+||+..+. .|.+||||++.++++.++|++++++.||.|||.|.|.+.......|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~- 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP- 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC-
Confidence 579999999999998875 3689999999999999999999999999999999999866667899999999998
Q ss_pred CCCCCccccEEEeceecCCCCceeEEEEccccccCcCCceeEEEEE
Q 003874 376 FDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIF 421 (790)
Q Consensus 376 ~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~~~G~l~L~i~ 421 (790)
. ++++||++.+++.++..++..+.|++|.+. ..|+|+|++.
T Consensus 80 ~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~----~~G~~~~~~~ 120 (121)
T cd08391 80 D-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV----KSGRLHLKLE 120 (121)
T ss_pred C-CCCcEEEEEEEHHHhcccCccceEEECcCC----CCceEEEEEe
Confidence 6 889999999999999887788999999862 5799999873
No 14
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.75 E-value=1.8e-17 Score=158.38 Aligned_cols=118 Identities=25% Similarity=0.351 Sum_probs=102.6
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCC
Q 003874 300 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 379 (790)
Q Consensus 300 ~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~d 379 (790)
..|.|+|+|++|++|++.+..|.+||||++.++++.++|+++++++||.|||+|.|.+.......|.|+|||++. +++|
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~-~~~d 91 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF-FSPD 91 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC-CCCC
Confidence 468999999999999999999999999999999999999999999999999999999865556789999999998 8899
Q ss_pred CccccEEEeceecCC-----CCceeEEEEccccccCcCCceeEEEEEE
Q 003874 380 TSLGHAEINFLKHTS-----TELADMWVSLEGKLAQSAQSKVHLRIFL 422 (790)
Q Consensus 380 d~LG~~~i~L~~l~~-----~~~~~~w~~L~~k~~~~~~G~l~L~i~l 422 (790)
++||++.+++.++.. ......|..|.+ ...|+|+|++.+
T Consensus 92 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~----~~~g~i~l~~~~ 135 (136)
T cd08375 92 DFLGRTEIRVADILKETKESKGPITKRLLLHE----VPTGEVVVKLDL 135 (136)
T ss_pred CeeEEEEEEHHHhccccccCCCcEEEEecccc----ccceeEEEEEEe
Confidence 999999999998864 333345677654 456999998865
No 15
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.75 E-value=1e-17 Score=155.99 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=90.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE-C----C--eEeeeecccCCCCCeEeeEEEEEeecC---CCCeEEEEEEee
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTC-N----G--KTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDF 372 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l-~----~--~~~kT~v~~~tlnP~WnE~f~f~v~~~---~~~~L~v~V~D~ 372 (790)
.|+|+|++|+||+..+ .|.+||||++++ + . ++++|+++.+++||+|||+|.|.+..+ ....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 599999999997 2 2 357899999999999999999998643 235799999999
Q ss_pred CCCCCCCCccccEEEeceecCCCCceeEEEEcccc
Q 003874 373 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 407 (790)
Q Consensus 373 d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k 407 (790)
|. .+++++||++.+++..+..++..+.|++|..+
T Consensus 80 d~-~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 80 CF-ARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred cc-cCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 97 78899999999999999998889999999764
No 16
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.75 E-value=1.5e-17 Score=155.82 Aligned_cols=116 Identities=18% Similarity=0.225 Sum_probs=100.2
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-EeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCc
Q 003874 304 LTVALVEGVNLASSE-MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 381 (790)
Q Consensus 304 L~V~vl~A~~L~~~d-~~g~sDPyV~v~l~~~-~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 381 (790)
|+|+|++|+||++++ ..|.+||||.+.++++ .++|+++++|+||.|||+|.|.+. +....|.|.|||++. +++|++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~-~~~~~l~~~v~d~~~-~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP-RTFRHLSFYIYDRDV-LRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcC-CCCCEEEEEEEECCC-CCCCce
Confidence 789999999999874 4678999999999765 579999999999999999999984 445799999999999 899999
Q ss_pred cccEEEeceecCCCCceeEEEEccccc-cCcCCceeEEEEE
Q 003874 382 LGHAEINFLKHTSTELADMWVSLEGKL-AQSAQSKVHLRIF 421 (790)
Q Consensus 382 LG~~~i~L~~l~~~~~~~~w~~L~~k~-~~~~~G~l~L~i~ 421 (790)
||++.++++.+..++..+.|++|+... .....|+|||.+.
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence 999999999998888889999998642 1234799999874
No 17
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.74 E-value=6.6e-18 Score=161.26 Aligned_cols=98 Identities=30% Similarity=0.482 Sum_probs=91.2
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCC
Q 003874 300 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 379 (790)
Q Consensus 300 ~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~d 379 (790)
.-|.|+|+|++|.||..+|..++|||||++.+++++.+|+++.+++||.|||.|.|.+ .++...|+++|||+|. ++.|
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v-~d~~~~lkv~VyD~D~-fs~d 81 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTV-KDPNTPLKVTVYDKDT-FSSD 81 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEe-cCCCceEEEEEEeCCC-CCcc
Confidence 4589999999999999999889999999999999999999999999999999999998 7889999999999999 9999
Q ss_pred CccccEEEeceecCCCCcee
Q 003874 380 TSLGHAEINFLKHTSTELAD 399 (790)
Q Consensus 380 d~LG~~~i~L~~l~~~~~~~ 399 (790)
|+||.++|++..+.......
T Consensus 82 D~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred cccceeeeccHHHHHHhhhh
Confidence 99999999999986655433
No 18
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.74 E-value=1.4e-17 Score=155.89 Aligned_cols=114 Identities=23% Similarity=0.372 Sum_probs=99.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCccc
Q 003874 304 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLG 383 (790)
Q Consensus 304 L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~LG 383 (790)
|+|+|++|+||+++ .+||||++.+++++.+|+++++++||.|||+|.|.+.......|.++|||+|. . ++++||
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~-~-~~~~lG 75 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDK-A-KDDFLG 75 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCC-C-cCceee
Confidence 89999999999887 68999999999999999999999999999999999754467889999999998 5 789999
Q ss_pred cEEEeceecCCCC-----ceeEEEEccccccCcCCceeEEEEEEe
Q 003874 384 HAEINFLKHTSTE-----LADMWVSLEGKLAQSAQSKVHLRIFLE 423 (790)
Q Consensus 384 ~~~i~L~~l~~~~-----~~~~w~~L~~k~~~~~~G~l~L~i~l~ 423 (790)
++.++++.+.... ..+.||+|.+..+....|+|+|.+++.
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 9999999985432 356899998876556689999999863
No 19
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.74 E-value=2.5e-17 Score=154.58 Aligned_cols=117 Identities=28% Similarity=0.502 Sum_probs=101.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCcc
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 382 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~L 382 (790)
.|+|+|++|++|++++..|.+||||++++++.+++|+++++++||.|||+|.|.+.......|.|+|||++. ++++++|
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~-~~~~~~i 79 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDL-VSKNDFL 79 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCC-CCCCcEe
Confidence 389999999999999988899999999999999999999999999999999999866556789999999998 7899999
Q ss_pred ccEEEeceecCCCCceeEEEEcccccc-----CcCCceeEEEE
Q 003874 383 GHAEINFLKHTSTELADMWVSLEGKLA-----QSAQSKVHLRI 420 (790)
Q Consensus 383 G~~~i~L~~l~~~~~~~~w~~L~~k~~-----~~~~G~l~L~i 420 (790)
|++.+++.++..+...+.|+.|.+... ....|.|++.|
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999877777789999986321 22357777765
No 20
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.73 E-value=1.3e-17 Score=153.56 Aligned_cols=104 Identities=20% Similarity=0.281 Sum_probs=89.1
Q ss_pred ccCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEE
Q 003874 297 AQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG----KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVF 370 (790)
Q Consensus 297 ~~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~----~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~ 370 (790)
+....+.|+|+|++|+||+ ..|.+||||++.+.. .+++|+++++|+||+|||+|.|++..+ +...|.|.||
T Consensus 9 Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~ 85 (118)
T cd08677 9 YDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR 85 (118)
T ss_pred EcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence 4456789999999999998 346799999999942 477999999999999999999998553 3568999999
Q ss_pred eeCCCCCCCCccccEEEeceecCCCCceeEEEEc
Q 003874 371 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSL 404 (790)
Q Consensus 371 D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L 404 (790)
|+|+ ++++++||++.+++..+..+....+|..|
T Consensus 86 d~Dr-fs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 86 CCDR-FSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred eCCC-CCCCceEEEEEEccccccCCccccchhcC
Confidence 9999 99999999999999988666667788654
No 21
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.73 E-value=4.9e-17 Score=153.39 Aligned_cols=116 Identities=22% Similarity=0.342 Sum_probs=101.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC--CeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCc
Q 003874 304 LTVALVEGVNLASSEMTGLSDPYVVFTCN--GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 381 (790)
Q Consensus 304 L~V~vl~A~~L~~~d~~g~sDPyV~v~l~--~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 381 (790)
|.|+|++|+||+. ..|.+||||++.++ .++++|+++++++||.|||.|.|.+ ......|.|+|||++. .++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~-~~~~~~l~~~v~d~~~-~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFEL-SPNSKELLFEVYDNGK-KSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEe-CCCCCEEEEEEEECCC-CCCCce
Confidence 5799999999988 67899999999997 4678999999999999999999998 4446789999999999 788999
Q ss_pred cccEEEeceecCCCCceeEEEEccccc--cCcCCceeEEEEEEe
Q 003874 382 LGHAEINFLKHTSTELADMWVSLEGKL--AQSAQSKVHLRIFLE 423 (790)
Q Consensus 382 LG~~~i~L~~l~~~~~~~~w~~L~~k~--~~~~~G~l~L~i~l~ 423 (790)
||++.+++..+..+.....|++|.++. +....|+|++.+.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~ 120 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFM 120 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEe
Confidence 999999999998888788999998763 234689999999654
No 22
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.73 E-value=1.8e-17 Score=155.51 Aligned_cols=102 Identities=25% Similarity=0.352 Sum_probs=91.6
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeec---CCCCeEEEEEEee
Q 003874 301 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDF 372 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~---~~~~~L~v~V~D~ 372 (790)
.+.|.|.|++|+||++++ .|.+||||++++. ..+++|+++++++||.|||+|.|.+.. .....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 578999999999999999 8999999999995 347899999999999999999998622 2457899999999
Q ss_pred CCCCCCCCccccEEEeceecCCCCceeEEEEc
Q 003874 373 DGPFDQATSLGHAEINFLKHTSTELADMWVSL 404 (790)
Q Consensus 373 d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L 404 (790)
|. ++++++||++.++|..+..++..+.||+|
T Consensus 91 d~-~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DS-LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CC-CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 98 89999999999999999888878999997
No 23
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.71 E-value=1.4e-16 Score=148.49 Aligned_cols=117 Identities=26% Similarity=0.445 Sum_probs=102.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCc
Q 003874 302 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 381 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 381 (790)
|.|+|+|++|+||+..+..+.+||||++.+++..++|++++++.||.|||+|.|.+ .+....|.|+|||++. .+++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~-~~~~~~l~~~v~d~~~-~~~~~~ 78 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPI-KDIHDVLEVTVYDEDK-DKKPEF 78 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEe-cCcCCEEEEEEEECCC-CCCCce
Confidence 67999999999999999999999999999998889999999999999999999997 4556899999999998 789999
Q ss_pred cccEEEeceecCCCCceeEEEEcccccc-CcCCceeEEEEEE
Q 003874 382 LGHAEINFLKHTSTELADMWVSLEGKLA-QSAQSKVHLRIFL 422 (790)
Q Consensus 382 LG~~~i~L~~l~~~~~~~~w~~L~~k~~-~~~~G~l~L~i~l 422 (790)
||++.+++.++..+. ..|++|..+.. ....|+|+|.+.+
T Consensus 79 iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 999999999986543 58999976543 2358999998754
No 24
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.71 E-value=1.4e-16 Score=150.24 Aligned_cols=117 Identities=15% Similarity=0.294 Sum_probs=98.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCC
Q 003874 302 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 380 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~-~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 380 (790)
..|+|+|++|+||++. +.+||||++.+++. ..+|++. +++||.|||+|.|.+.......+.|.|||++. .++|+
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~-~~~d~ 78 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAK-RSKDS 78 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCC-CCCCC
Confidence 3699999999999875 46899999999874 4688874 68999999999998644434679999999998 79999
Q ss_pred ccccEEEeceecCCCCceeEEEEccccc--cCcCCceeEEEEEEe
Q 003874 381 SLGHAEINFLKHTSTELADMWVSLEGKL--AQSAQSKVHLRIFLE 423 (790)
Q Consensus 381 ~LG~~~i~L~~l~~~~~~~~w~~L~~k~--~~~~~G~l~L~i~l~ 423 (790)
+||++.++|..+..+...+.|++|.+.. +....|+|+|++.+.
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 9999999999998888889999998754 234569999999764
No 25
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.71 E-value=4e-17 Score=157.78 Aligned_cols=103 Identities=23% Similarity=0.305 Sum_probs=89.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCCCCeEeeEEEEEeec--------------C-CC
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAME--------------E-PP 362 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~-----~~~kT~v~~~tlnP~WnE~f~f~v~~--------------~-~~ 362 (790)
.|+|+|++|+||++ ..|.+||||++++.. .+++|+++++++||+|||+|.|.+.. + ..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999998 568999999999965 57799999999999999999999841 1 23
Q ss_pred CeEEEEEEeeCCCCCCCCccccEEEeceecCCC-CceeEEEEccccc
Q 003874 363 SVLDVEVFDFDGPFDQATSLGHAEINFLKHTST-ELADMWVSLEGKL 408 (790)
Q Consensus 363 ~~L~v~V~D~d~~~~~dd~LG~~~i~L~~l~~~-~~~~~w~~L~~k~ 408 (790)
..|.|.|||++. +++|++||++.|++..+..+ ...+.||+|..+.
T Consensus 79 ~~L~i~V~d~~~-~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASM-GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCC-CCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 579999999998 78999999999999999876 6678999998653
No 26
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=6.1e-17 Score=155.69 Aligned_cols=107 Identities=22% Similarity=0.294 Sum_probs=94.1
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC--C---eEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEE-eeC
Q 003874 301 GWVLTVALVEGVNLASSE-MTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF-DFD 373 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~~~d-~~g~sDPyV~v~l~--~---~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~-D~d 373 (790)
.+.|.|.|++|+||++.+ ..|.+||||++++. + .++||+++++++||+|||+|.|.+. .....|.|+|| |++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 468999999999999874 57889999999993 2 3779999999999999999999985 66789999999 678
Q ss_pred CCCCCCCccccEEEeceecCCCCceeEEEEcccccc
Q 003874 374 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLA 409 (790)
Q Consensus 374 ~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~ 409 (790)
. ++++++||++.|+|+.+..+.....||+|.+..+
T Consensus 107 ~-~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 107 R-MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS 141 (146)
T ss_pred C-CCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence 7 7899999999999999987778889999987543
No 27
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.71 E-value=1.2e-16 Score=150.65 Aligned_cols=118 Identities=22% Similarity=0.430 Sum_probs=101.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCC
Q 003874 302 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ 378 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~---~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~ 378 (790)
+.|+|+|++|++|+..+..|.+||||++.+++ ..++|+++++++||.|||+|.|.+.......|.|+|||++. +++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~-~~~ 79 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSF-VGK 79 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCC-CCC
Confidence 36899999999999999999999999999853 36799999999999999999999865556789999999998 788
Q ss_pred CCccccEEEeceecCC---CCceeEEEEccccccCcCCceeEEEEEEecCC
Q 003874 379 ATSLGHAEINFLKHTS---TELADMWVSLEGKLAQSAQSKVHLRIFLENNN 426 (790)
Q Consensus 379 dd~LG~~~i~L~~l~~---~~~~~~w~~L~~k~~~~~~G~l~L~i~l~~~~ 426 (790)
+++||++.++|..+.. +...+.|++|.+ +|+++|++.+....
T Consensus 80 ~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~------~g~i~l~~~~~~~~ 124 (126)
T cd04043 80 HDLCGRASLKLDPKRFGDDGLPREIWLDLDT------QGRLLLRVSMEGER 124 (126)
T ss_pred CceEEEEEEecCHHHcCCCCCCceEEEEcCC------CCeEEEEEEEeeec
Confidence 9999999999987532 446789999975 68999999887654
No 28
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=9e-17 Score=152.87 Aligned_cols=118 Identities=21% Similarity=0.334 Sum_probs=99.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------EeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCC
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-------TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 375 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~-------~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~ 375 (790)
.|+|+|++|+||+..+..|.+||||++.+.+. +++|++++++.||.|||+|.|.+. .....|.|+|||++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~~~v~d~~~- 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN-PREHRLLFEVFDENR- 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEc-CCCCEEEEEEEECCC-
Confidence 48999999999999998899999999999654 579999999999999999999984 445789999999998
Q ss_pred CCCCCccccEEEeceecCCCCc------eeEEEEcccccc-CcCCceeEEEEEE
Q 003874 376 FDQATSLGHAEINFLKHTSTEL------ADMWVSLEGKLA-QSAQSKVHLRIFL 422 (790)
Q Consensus 376 ~~~dd~LG~~~i~L~~l~~~~~------~~~w~~L~~k~~-~~~~G~l~L~i~l 422 (790)
++++++||++.+++.++..+.. ...||+|+++.. ....|.|+|.+.+
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 8899999999999999865433 468999986532 2357999998854
No 29
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.71 E-value=1.3e-16 Score=149.52 Aligned_cols=116 Identities=22% Similarity=0.383 Sum_probs=99.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-eeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCcc
Q 003874 304 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 382 (790)
Q Consensus 304 L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~-~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~L 382 (790)
|.|+|++|++|++++..|.+||||++.+++.. .+|+++++++||.|||.|.|.+ .+....|.|+|||++. +++|++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~-~~~~~~l~v~v~d~~~-~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHL-PPGFHTVSFYVLDEDT-LSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEee-CCCCCEEEEEEEECCC-CCCCCEE
Confidence 78999999999999999999999999997654 6999999999999999999997 4455799999999998 8999999
Q ss_pred ccEEEeceecCCC-CceeEEEEcccc-ccCcCCceeEEEEE
Q 003874 383 GHAEINFLKHTST-ELADMWVSLEGK-LAQSAQSKVHLRIF 421 (790)
Q Consensus 383 G~~~i~L~~l~~~-~~~~~w~~L~~k-~~~~~~G~l~L~i~ 421 (790)
|++.+++..+... ...+.|++|.+. ......|+|+|.+.
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999999887643 346899999763 22345799988764
No 30
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.70 E-value=2.4e-16 Score=154.47 Aligned_cols=119 Identities=21% Similarity=0.279 Sum_probs=101.7
Q ss_pred ceEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCeE-eeeecccCCCCCeE
Q 003874 301 GWVLTVALVEGVNLASSE------------------------------MTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQW 349 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~~~d------------------------------~~g~sDPyV~v~l~~~~-~kT~v~~~tlnP~W 349 (790)
.|.|.|+|++|++|+.+| ..|.+||||++.+++.+ .+|++++++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 489999999999999987 35678999999998755 59999999999999
Q ss_pred eeEEEEEeecCCCCeEEEEEEeeCCCCCCCCccccEEEeceecCCCCceeEEEEccccccC--cCCceeEEEEEE
Q 003874 350 HDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ--SAQSKVHLRIFL 422 (790)
Q Consensus 350 nE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~--~~~G~l~L~i~l 422 (790)
||+|.|.+ .+..+.|.|+|||+|. ++ +++||++.++++++..+...+.|++|.+..+. ...|+||+++.+
T Consensus 86 nE~F~~~~-~~~~~~l~~~V~d~d~-~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYC-AHYASHVEFTVKDNDV-VG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEc-cCCCCEEEEEEEeCCC-cC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999987 4556789999999997 65 68999999999999888888999999765433 345799998854
No 31
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.70 E-value=2.5e-16 Score=149.74 Aligned_cols=115 Identities=24% Similarity=0.430 Sum_probs=101.2
Q ss_pred ceEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCeE-eeeecccCCCCCeEeeEEEEEeecCCCCeEEEEE
Q 003874 301 GWVLTVALVEGVNLASSEMT----------GLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEV 369 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~~~d~~----------g~sDPyV~v~l~~~~-~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V 369 (790)
.|.|+|+|++|++|++.+.. |.+||||++.+++++ .+|+++.++.||.|||+|.|.+. ....|.|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~v 80 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELTV 80 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEEE
Confidence 47899999999999988862 679999999998765 59999999999999999999984 457899999
Q ss_pred EeeCCCCCCCCccccEEEeceecCC--CCceeEEEEccccccCcCCceeEEEEEEec
Q 003874 370 FDFDGPFDQATSLGHAEINFLKHTS--TELADMWVSLEGKLAQSAQSKVHLRIFLEN 424 (790)
Q Consensus 370 ~D~d~~~~~dd~LG~~~i~L~~l~~--~~~~~~w~~L~~k~~~~~~G~l~L~i~l~~ 424 (790)
||.+. ++++++||++.++|..+.. +...+.|++|++ +|+|+|++.+..
T Consensus 81 ~d~~~-~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~------~G~l~l~~~~~~ 130 (132)
T cd04014 81 FHDAA-IGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP------QGKLHVKIELKG 130 (132)
T ss_pred EeCCC-CCCCceEEEEEEEhHHhcccCCCcccEEEEccC------CcEEEEEEEEec
Confidence 99998 7889999999999999876 567799999974 699999998765
No 32
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.70 E-value=6.2e-17 Score=152.47 Aligned_cols=107 Identities=24% Similarity=0.396 Sum_probs=93.1
Q ss_pred cCCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 003874 298 QGDGWVLTVALVEGVNLASSEMT-GLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEV 369 (790)
Q Consensus 298 ~~~~g~L~V~vl~A~~L~~~d~~-g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V 369 (790)
....+.|.|+|++|+||++++.. |.+||||++++. ..+++|+++++++||.|||+|.|.+..+ ....|.|+|
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 11 DPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred ECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 33457899999999999999975 899999999983 2457999999999999999999997532 346899999
Q ss_pred EeeCCCCCCCCccccEEEeceecCCCCceeEEEEcc
Q 003874 370 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 405 (790)
Q Consensus 370 ~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~ 405 (790)
||+|. ++++++||++.++|..+..++....||+|+
T Consensus 91 ~d~~~-~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDS-LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCC-CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99998 899999999999999998777788999984
No 33
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.69 E-value=1.3e-16 Score=145.51 Aligned_cols=101 Identities=26% Similarity=0.307 Sum_probs=90.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCcc
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 382 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~L 382 (790)
.|.|+|++|+||+..+..+.+||||+++++++.++|++++++.||.|||.|.|.+..+....|.|+|||++. +++|
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~----~~~i 76 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT----GKSL 76 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC----CCcc
Confidence 389999999999999988999999999999999999999999999999999999966567789999999874 7899
Q ss_pred ccEEEeceecCCCC--ceeEEEEcccc
Q 003874 383 GHAEINFLKHTSTE--LADMWVSLEGK 407 (790)
Q Consensus 383 G~~~i~L~~l~~~~--~~~~w~~L~~k 407 (790)
|++.++|..+.... ..+.||+|.++
T Consensus 77 G~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 77 GSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEEHHHhhccccceeeeeEecCCC
Confidence 99999999986543 67899999863
No 34
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.69 E-value=1.1e-16 Score=150.64 Aligned_cols=108 Identities=23% Similarity=0.314 Sum_probs=93.7
Q ss_pred ccCCceEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 003874 297 AQGDGWVLTVALVEGVNLASSEM-TGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVE 368 (790)
Q Consensus 297 ~~~~~g~L~V~vl~A~~L~~~d~-~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~ 368 (790)
+....+.|.|+|++|+||++.+. .|.+||||++++. ..++||+++++++||.|||+|.|.+..+ ....|.|+
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 34456789999999999998875 5889999999983 2367999999999999999999998443 34689999
Q ss_pred EEeeCCCCCCCCccccEEEeceecCCCCceeEEEEcc
Q 003874 369 VFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 405 (790)
Q Consensus 369 V~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~ 405 (790)
|||+|. ++++++||++.+++..+...+..+.|++|.
T Consensus 90 V~d~~~-~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 90 VWHYDR-FGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EEECCC-CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 999998 899999999999999998888889999984
No 35
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.69 E-value=1.5e-16 Score=149.56 Aligned_cols=108 Identities=25% Similarity=0.517 Sum_probs=95.5
Q ss_pred ccCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEEe
Q 003874 297 AQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 371 (790)
Q Consensus 297 ~~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~---~~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~D 371 (790)
+....+.|.|+|++|+||++++..|.+||||++.+. .+.++|+++++++||.|||+|.|.+... ....|.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 11 YDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred ECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 344567999999999999999999999999999983 4568999999999999999999997543 24689999999
Q ss_pred eCCCCCCCCccccEEEeceecCCCCceeEEEEcc
Q 003874 372 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 405 (790)
Q Consensus 372 ~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~ 405 (790)
++. ++++++||++.++++++..++..+.|++|.
T Consensus 91 ~~~-~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 91 FDQ-FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCC-CCCCceeEEEEEecccccCCCCcceEEECc
Confidence 998 889999999999999998888889999986
No 36
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.68 E-value=3.1e-16 Score=148.11 Aligned_cols=115 Identities=23% Similarity=0.438 Sum_probs=97.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCC-------
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP------- 375 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~------- 375 (790)
.|+|+|++|++|+..|..|.+||||++++++..++|+++.+++||.|||.|.|.+. .+...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~-~~~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECH-NSSDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEec-CCCCEEEEEEEECCCCcccccce
Confidence 68999999999999999999999999999988999999999999999999999873 4467899999999851
Q ss_pred ---CCCCCccccEEEeceecCCCCceeEEEEccccccC-cCCceeEEEE
Q 003874 376 ---FDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRI 420 (790)
Q Consensus 376 ---~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~-~~~G~l~L~i 420 (790)
.+.+++||++.+++..+. +..++|++|.++... ..+|+|.|++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 146899999999999864 445799999876543 3578888764
No 37
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.68 E-value=2.6e-16 Score=147.93 Aligned_cols=107 Identities=25% Similarity=0.428 Sum_probs=94.7
Q ss_pred cCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEEee
Q 003874 298 QGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 372 (790)
Q Consensus 298 ~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~---~~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~D~ 372 (790)
....+.|+|+|++|+||++.+..|.+||||++.+. .++++|++++++.||.|||+|.|.+..+ ....|.|+|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 12 DFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 34567899999999999999988999999999984 3467999999999999999999997542 246899999999
Q ss_pred CCCCCCCCccccEEEeceecCCCCceeEEEEcc
Q 003874 373 DGPFDQATSLGHAEINFLKHTSTELADMWVSLE 405 (790)
Q Consensus 373 d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~ 405 (790)
|. ++++++||++.+++..+..+...+.|++|+
T Consensus 92 d~-~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 92 DR-FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CC-CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 98 889999999999999998888889999986
No 38
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=5.8e-16 Score=146.23 Aligned_cols=117 Identities=19% Similarity=0.339 Sum_probs=103.0
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEEeeCCCCCCCCccccE
Q 003874 308 LVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGPFDQATSLGHA 385 (790)
Q Consensus 308 vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~D~d~~~~~dd~LG~~ 385 (790)
|++|+||+. ..|.+||||++.+++.+++|++++++.||.|||+|.|.+... ....|.|+|||++. .++|++||++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-~~~d~~iG~~ 78 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-VGRNRLIGSA 78 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-CCCCceEEEE
Confidence 689999998 678999999999999999999999999999999999998543 56899999999998 7899999999
Q ss_pred EEeceecCCCCceeEEEEccccccCcCCceeEEEEEEecCCC
Q 003874 386 EINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 427 (790)
Q Consensus 386 ~i~L~~l~~~~~~~~w~~L~~k~~~~~~G~l~L~i~l~~~~~ 427 (790)
.+++.++..++....|++|....+....|+|++.+.+.+..+
T Consensus 79 ~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 79 TVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 999999988888899999986655556789999997765543
No 39
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.68 E-value=5.9e-16 Score=147.84 Aligned_cols=118 Identities=22% Similarity=0.357 Sum_probs=99.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecC---------CCCeEEEEEEeeC
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE---------PPSVLDVEVFDFD 373 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~---------~~~~L~v~V~D~d 373 (790)
+|+|+|++|++|+++|..|.+||||++.+++++++|+++++++||.|||.|.|.+... ....|.|+|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 6899999999999999999999999999999999999999999999999999974321 2357999999999
Q ss_pred CCCCCCCccccEEE-eceecC---CCCceeEEEEccccccCcCCceeEEEEEEe
Q 003874 374 GPFDQATSLGHAEI-NFLKHT---STELADMWVSLEGKLAQSAQSKVHLRIFLE 423 (790)
Q Consensus 374 ~~~~~dd~LG~~~i-~L~~l~---~~~~~~~w~~L~~k~~~~~~G~l~L~i~l~ 423 (790)
. .++|++||++.+ ++..+. .......|++|.... ...|+|.|.+.|-
T Consensus 82 ~-~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~--~~~Geil~~~~~~ 132 (135)
T cd04017 82 S-VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG--QSAGELLAAFELI 132 (135)
T ss_pred C-CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCC--CchhheeEEeEEE
Confidence 8 789999999987 444443 346678999997543 3689999998764
No 40
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.67 E-value=9.6e-16 Score=144.59 Aligned_cols=118 Identities=20% Similarity=0.318 Sum_probs=100.3
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCC
Q 003874 301 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 380 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 380 (790)
.++|+|+|++|++|+..+..|.+||||++.+++++++|++++++.||.|||.|.|.+ ......|.|+|||++. + .|+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~-~~~~~~l~i~V~d~~~-~-~d~ 78 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYR-KKPRSPIKIQVWNSNL-L-CDE 78 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEe-cCCCCEEEEEEEECCC-C-CCC
Confidence 478999999999999999999999999999999999999999999999999999987 4567899999999998 5 589
Q ss_pred ccccEEEeceecCCCCceeEEEEcccc---ccCcCCceeEEEEEEe
Q 003874 381 SLGHAEINFLKHTSTELADMWVSLEGK---LAQSAQSKVHLRIFLE 423 (790)
Q Consensus 381 ~LG~~~i~L~~l~~~~~~~~w~~L~~k---~~~~~~G~l~L~i~l~ 423 (790)
+||++.+++..+. .....|++|..+ ......|.|.+++.+.
T Consensus 79 ~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 79 FLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred ceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 9999999998753 344578888532 2335679999888653
No 41
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.67 E-value=2.3e-16 Score=149.10 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=91.9
Q ss_pred ccCCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 003874 297 AQGDGWVLTVALVEGVNLASSEMT-GLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVE 368 (790)
Q Consensus 297 ~~~~~g~L~V~vl~A~~L~~~d~~-g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~ 368 (790)
+....+.|.|+|++|+||++++.. |.+||||++++. ..++||+++++++||+|||+|.|.+..+ ....|.|.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 344567999999999999999875 999999999983 3477999999999999999999997543 24689999
Q ss_pred EEeeCCCCCCCCccccEEEeceecCCC---CceeEEEEcc
Q 003874 369 VFDFDGPFDQATSLGHAEINFLKHTST---ELADMWVSLE 405 (790)
Q Consensus 369 V~D~d~~~~~dd~LG~~~i~L~~l~~~---~~~~~w~~L~ 405 (790)
|||.+. ++++++||++.|+|.++... .....||+|.
T Consensus 90 V~~~~~-~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 90 VWHSRT-LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred EEeCCC-CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 999998 89999999999999998543 4667899984
No 42
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.67 E-value=3e-16 Score=144.43 Aligned_cols=102 Identities=20% Similarity=0.390 Sum_probs=90.4
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEeeeecccCCCCCeE-eeEEEEEeecCC--CCeEEEEEEeeCCCCCCC
Q 003874 304 LTVALVEGVNLASSEM-TGLSDPYVVFTCNGKTRTSSVQLQTCDPQW-HDILEFDAMEEP--PSVLDVEVFDFDGPFDQA 379 (790)
Q Consensus 304 L~V~vl~A~~L~~~d~-~g~sDPyV~v~l~~~~~kT~v~~~tlnP~W-nE~f~f~v~~~~--~~~L~v~V~D~d~~~~~d 379 (790)
|.|+|++|+||+.++. .|.+||||+++++++++||+++++++||.| ||+|.|.+.... ...|.|+|||++. ++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~-~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT-YSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC-CCCC
Confidence 6899999999999884 788999999999999999999999999999 999999985432 4689999999998 8999
Q ss_pred CccccEEEeceecCC---CCceeEEEEccc
Q 003874 380 TSLGHAEINFLKHTS---TELADMWVSLEG 406 (790)
Q Consensus 380 d~LG~~~i~L~~l~~---~~~~~~w~~L~~ 406 (790)
++||++.+++.++.. +...+.||+|..
T Consensus 80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 80 DAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 999999999999865 445788999864
No 43
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.66 E-value=5.6e-16 Score=145.66 Aligned_cols=106 Identities=21% Similarity=0.380 Sum_probs=90.3
Q ss_pred cCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCCCCeEeeEEEEEeecC---CCCeEEEEE
Q 003874 298 QGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEV 369 (790)
Q Consensus 298 ~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~-----~~~kT~v~~~tlnP~WnE~f~f~v~~~---~~~~L~v~V 369 (790)
....+.|+|+|++|+||+..+..+.+||||++++.. .+++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V 91 (125)
T cd04031 12 DKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV 91 (125)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence 345678999999999999999889999999999853 577999999999999999999985332 356899999
Q ss_pred EeeCCCCCCCCccccEEEeceecCCCCceeEEEEcc
Q 003874 370 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 405 (790)
Q Consensus 370 ~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~ 405 (790)
||++. ++++++||++.++|.+. .......||+|+
T Consensus 92 ~d~~~-~~~~~~iG~~~i~l~~~-~~~~~~~W~~L~ 125 (125)
T cd04031 92 WDYDR-DGENDFLGEVVIDLADA-LLDDEPHWYPLQ 125 (125)
T ss_pred EeCCC-CCCCcEeeEEEEecccc-cccCCcceEECc
Confidence 99998 78999999999999983 333457899985
No 44
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.65 E-value=4e-16 Score=143.83 Aligned_cols=100 Identities=21% Similarity=0.382 Sum_probs=87.2
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEeeeecccCCCCCeEeeEEEEEeecC---CCCeEEEEEEeeCC
Q 003874 302 WVLTVALVEGVNLASSEMT-GLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDFDG 374 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~~-g~sDPyV~v~l~---~~~~kT~v~~~tlnP~WnE~f~f~v~~~---~~~~L~v~V~D~d~ 374 (790)
|+|+|+|++|+||++.+.. |.+||||++++. ...++|+++++++||.|||+|.|.+..+ ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 899999999984 3467999999999999999999987544 45689999999998
Q ss_pred CCCCCCccccEEEeceecCCCCceeEEEEcc
Q 003874 375 PFDQATSLGHAEINFLKHTSTELADMWVSLE 405 (790)
Q Consensus 375 ~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~ 405 (790)
+++|++||++.+++.++.. ...|+++.
T Consensus 81 -~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 81 -FTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred -CCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 8899999999999999863 34588875
No 45
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.65 E-value=4.7e-16 Score=145.91 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=92.8
Q ss_pred cccCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CeEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEE
Q 003874 296 KAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN------GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDV 367 (790)
Q Consensus 296 ~~~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~------~~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v 367 (790)
.+....+.|.|+|++|+||++.+..|.+||||++++- ..+++|+++++++||+|||+|.|.+..+ ....|.|
T Consensus 8 ~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~ 87 (124)
T cd08680 8 RYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQV 87 (124)
T ss_pred EECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEE
Confidence 4455678999999999999999888999999999982 2478999999999999999999997544 4579999
Q ss_pred EEEeeCCCCCCCCccccEEEeceecCCC-CceeEEEEc
Q 003874 368 EVFDFDGPFDQATSLGHAEINFLKHTST-ELADMWVSL 404 (790)
Q Consensus 368 ~V~D~d~~~~~dd~LG~~~i~L~~l~~~-~~~~~w~~L 404 (790)
.|||.+. ++++++||++.|+|.++... .....||+|
T Consensus 88 ~V~~~~~-~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 88 DVCSVGP-DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEeCCC-CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999998 89999999999999998544 346779876
No 46
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.65 E-value=8.2e-16 Score=145.02 Aligned_cols=107 Identities=23% Similarity=0.346 Sum_probs=93.8
Q ss_pred cCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEE
Q 003874 298 QGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVF 370 (790)
Q Consensus 298 ~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~ 370 (790)
....+.|+|+|++|+||+..+..+.+||||++.+. ..+++|++++++.||.|||+|.|.+... ....|.|.||
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 34467899999999999999988999999999984 4578999999999999999999997543 2468999999
Q ss_pred eeCCCC--CCCCccccEEEeceecCCCCceeEEEEcc
Q 003874 371 DFDGPF--DQATSLGHAEINFLKHTSTELADMWVSLE 405 (790)
Q Consensus 371 D~d~~~--~~dd~LG~~~i~L~~l~~~~~~~~w~~L~ 405 (790)
|.+. + +++++||++.+++.++..++....||+|.
T Consensus 92 ~~~~-~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 92 NSKS-FLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ECCc-ccCCCCceEEEEEEecccccccCCccceEECc
Confidence 9987 5 68999999999999998888889999984
No 47
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.65 E-value=8e-16 Score=141.03 Aligned_cols=93 Identities=15% Similarity=0.214 Sum_probs=82.2
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecC-CCCeEEEEEEeeCCCC
Q 003874 302 WVLTVALVEGVNLASSEMT----GLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE-PPSVLDVEVFDFDGPF 376 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~~----g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~-~~~~L~v~V~D~d~~~ 376 (790)
|+|.|+|++|+||++.+.. +.+||||++.++++++||+++++++||+|||.|.|.+... ....|.|+|||+|. +
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~-~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK-F 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC-C
Confidence 6899999999999988742 3589999999999999999999999999999999998543 34589999999999 8
Q ss_pred CCCCccccEEEeceecCCC
Q 003874 377 DQATSLGHAEINFLKHTST 395 (790)
Q Consensus 377 ~~dd~LG~~~i~L~~l~~~ 395 (790)
++|++||++.++|.++..+
T Consensus 80 ~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 80 SFNDYVATGSLSVQELLNA 98 (108)
T ss_pred CCCcceEEEEEEHHHHHhh
Confidence 9999999999999998543
No 48
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.65 E-value=1.1e-15 Score=143.91 Aligned_cols=106 Identities=24% Similarity=0.483 Sum_probs=93.6
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeeeecccCCCCCeEeeEEEEEeecC---CCCeEEEEEEee
Q 003874 299 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTC---NGKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDF 372 (790)
Q Consensus 299 ~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l---~~~~~kT~v~~~tlnP~WnE~f~f~v~~~---~~~~L~v~V~D~ 372 (790)
...+.|.|+|++|+||+..+..|.+||||++.+ +.++.+|++++++.||.|||+|.|.+... ....|.++|||+
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 345789999999999999998999999999998 35678999999999999999999975322 345799999999
Q ss_pred CCCCCCCCccccEEEeceecCCCCceeEEEEcc
Q 003874 373 DGPFDQATSLGHAEINFLKHTSTELADMWVSLE 405 (790)
Q Consensus 373 d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~ 405 (790)
+. ++++++||++.+++.++..+...+.|++|.
T Consensus 93 d~-~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 93 DR-FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CC-CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 98 889999999999999998888889999986
No 49
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.65 E-value=1.4e-15 Score=141.52 Aligned_cols=99 Identities=15% Similarity=0.218 Sum_probs=85.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCc
Q 003874 302 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 381 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 381 (790)
+.|.|+|++|++|++++ ..||||++++++++.+|++.++ .||.|||.|.|.+ .+....|.|+|||+|. + .||+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~-~~~~~~L~v~V~dkd~-~-~DD~ 74 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEI-NRLDLGLVIELWNKGL-I-WDTL 74 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEE-cCCCCEEEEEEEeCCC-c-CCCc
Confidence 57999999999997655 4699999999999999999987 4999999999998 4566669999999997 4 8999
Q ss_pred cccEEEeceecCCCCc--eeEEEEcccc
Q 003874 382 LGHAEINFLKHTSTEL--ADMWVSLEGK 407 (790)
Q Consensus 382 LG~~~i~L~~l~~~~~--~~~w~~L~~k 407 (790)
||++.|+|.++..+.. ..+||+|++.
T Consensus 75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 75 VGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred eEEEEEEhHHcccCCCCCCCccEecChH
Confidence 9999999999875544 4899999863
No 50
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.64 E-value=2.3e-15 Score=145.94 Aligned_cols=129 Identities=19% Similarity=0.230 Sum_probs=102.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeeeecccCCCCCeEeeEEEEEeecCC--------CCeEEEE
Q 003874 302 WVLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDAMEEP--------PSVLDVE 368 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l-----~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~--------~~~L~v~ 368 (790)
+.|+|....+.+|++.+..+.+||||++++ +.+++||+++++|+||.|||+|.|.+.... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 344554444445788888889999999987 246889999999999999999999984331 3579999
Q ss_pred EEeeCCCC-CCCCccccEEEeceecCCCCceeEEEEccccccCcCCceeEEEEEEecCCCcchhh
Q 003874 369 VFDFDGPF-DQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVETIK 432 (790)
Q Consensus 369 V~D~d~~~-~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~~~G~l~L~i~l~~~~~~~~l~ 432 (790)
|||.+. + ++|++||++.++|+.+........|++|.. +....+|+|++++.+..+-....+.
T Consensus 84 V~d~~~-f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~k~~Gg~l~v~ir~r~p~~~~~~~ 146 (155)
T cd08690 84 VYHKGG-FLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-GRKATGGKLEVKVRLREPLTGKQLE 146 (155)
T ss_pred EEeCCC-cccCCCeeEEEEEEcccccccCcceEEEEhhh-CCCCcCCEEEEEEEecCCCccceee
Confidence 999998 6 579999999999999977766778999863 3446899999999887665544433
No 51
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.64 E-value=1.2e-15 Score=144.35 Aligned_cols=108 Identities=18% Similarity=0.234 Sum_probs=90.7
Q ss_pred ccCCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEeeeecccCCCCCeEeeEEEEE-eecC--CCCeEEEEE
Q 003874 297 AQGDGWVLTVALVEGVNLASSEMT-GLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFD-AMEE--PPSVLDVEV 369 (790)
Q Consensus 297 ~~~~~g~L~V~vl~A~~L~~~d~~-g~sDPyV~v~l~---~~~~kT~v~~~tlnP~WnE~f~f~-v~~~--~~~~L~v~V 369 (790)
+....+.|+|+|++|+||++.+.. |.+||||++.+. .++.||+++++++||.|||+|.|. +... ....|.++|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 344567999999999999998875 899999999984 456799999999999999999994 4222 235799999
Q ss_pred EeeCCCCCCCCccccEEEeceecCCC--CceeEEEEcc
Q 003874 370 FDFDGPFDQATSLGHAEINFLKHTST--ELADMWVSLE 405 (790)
Q Consensus 370 ~D~d~~~~~dd~LG~~~i~L~~l~~~--~~~~~w~~L~ 405 (790)
||+|. ++++++||++.++|..+... +....|.+|+
T Consensus 91 ~d~d~-~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 91 LSFDR-YSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEcCC-CCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 99998 89999999999999998554 6677899886
No 52
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.64 E-value=7e-16 Score=143.99 Aligned_cols=103 Identities=20% Similarity=0.292 Sum_probs=88.9
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecC-CCCeEEEEEEeeC
Q 003874 300 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE-PPSVLDVEVFDFD 373 (790)
Q Consensus 300 ~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~-~~~~L~v~V~D~d 373 (790)
..+.|.|+|++|+||++++ .|.+||||++++. ..++||+++++++||.|||+|.|.+..+ ....|.|+|||.+
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 3578999999999999998 8899999999984 2366999999999999999999997442 2457899999999
Q ss_pred CCCC-CCCccccEEEeceecCCCCceeEEEEc
Q 003874 374 GPFD-QATSLGHAEINFLKHTSTELADMWVSL 404 (790)
Q Consensus 374 ~~~~-~dd~LG~~~i~L~~l~~~~~~~~w~~L 404 (790)
. .. ++++||++.|++.++..+...+.||.|
T Consensus 89 ~-~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 S-KSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred C-CcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 7 55 478999999999999877778899986
No 53
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.64 E-value=1.7e-15 Score=142.37 Aligned_cols=114 Identities=22% Similarity=0.395 Sum_probs=94.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCC--CC
Q 003874 304 LTVALVEGVNLASSEMTGLSDPYVVFTCN-GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ--AT 380 (790)
Q Consensus 304 L~V~vl~A~~L~~~d~~g~sDPyV~v~l~-~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~--dd 380 (790)
|+|+|++|++|+..+..|.+||||++.++ .+.++|+++++++||.|||+|.|.+.. ...|.|+|||++. ++. |+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~-~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKK-FKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCC-CCCCCCc
Confidence 78999999999999999999999999996 678899999999999999999999843 6899999999998 664 57
Q ss_pred ccccEEEeceecCCCC-ceeEEEEcccccc---CcCCceeEEEE
Q 003874 381 SLGHAEINFLKHTSTE-LADMWVSLEGKLA---QSAQSKVHLRI 420 (790)
Q Consensus 381 ~LG~~~i~L~~l~~~~-~~~~w~~L~~k~~---~~~~G~l~L~i 420 (790)
+||++.+++.++.... ....|++|..... ....|+|.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999985433 4478999965432 22356666553
No 54
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.63 E-value=1.1e-15 Score=143.17 Aligned_cols=106 Identities=25% Similarity=0.354 Sum_probs=92.4
Q ss_pred cCCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 003874 298 QGDGWVLTVALVEGVNLASSE-MTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEV 369 (790)
Q Consensus 298 ~~~~g~L~V~vl~A~~L~~~d-~~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V 369 (790)
....+.|+|+|++|+||+..+ ..+.+||||++.+. ..+.+|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 10 NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 345678999999999999998 78899999999873 1467999999999999999999997443 256899999
Q ss_pred EeeCCCCCCCCccccEEEeceecCCCCceeEEEEc
Q 003874 370 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSL 404 (790)
Q Consensus 370 ~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L 404 (790)
||.+. ++++++||++.++|..+..+...+.||+|
T Consensus 90 ~d~~~-~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 90 WHHDR-FGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EeCCC-CcCCceeeEEEEecccccccCCCccEEEC
Confidence 99998 78999999999999999877778999987
No 55
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.63 E-value=1.6e-15 Score=142.61 Aligned_cols=108 Identities=15% Similarity=0.271 Sum_probs=93.5
Q ss_pred ccCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeeeecccCCCCCeEeeEEEEE-eecC--CCCeEEEEEE
Q 003874 297 AQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTC---NGKTRTSSVQLQTCDPQWHDILEFD-AMEE--PPSVLDVEVF 370 (790)
Q Consensus 297 ~~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l---~~~~~kT~v~~~tlnP~WnE~f~f~-v~~~--~~~~L~v~V~ 370 (790)
+....+.|.|+|++|+||++.+..|.+||||++.+ ..++++|+++++ .||.|||+|.|. +..+ ....|.++||
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 34456789999999999999998899999999876 245789999887 999999999998 5322 3568999999
Q ss_pred eeCCCCCCCCccccEEEeceecCCCCceeEEEEccc
Q 003874 371 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 406 (790)
Q Consensus 371 D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~ 406 (790)
|++. ++++++||++.|+|+.+..+.....|++|++
T Consensus 90 ~~~~-~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 90 GVER-MRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred ECCC-cccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 9998 8999999999999999988888999999973
No 56
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.63 E-value=2.3e-15 Score=141.13 Aligned_cols=109 Identities=22% Similarity=0.325 Sum_probs=94.8
Q ss_pred ccCCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEE
Q 003874 297 AQGDGWVLTVALVEGVNLASSE-MTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVF 370 (790)
Q Consensus 297 ~~~~~g~L~V~vl~A~~L~~~d-~~g~sDPyV~v~l~---~~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~ 370 (790)
+....+.|.|+|++|+||+..+ ..+.+||||++++. .+..+|+++++++||.|||.|.|.+... ....|.|+||
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 9 YDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 3445678999999999999998 68899999999983 4567999999999999999999997543 2458999999
Q ss_pred eeCCCCCCCCccccEEEeceecCCCCceeEEEEccc
Q 003874 371 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 406 (790)
Q Consensus 371 D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~ 406 (790)
|.+. .+++++||++.++|.++......+.|++|+.
T Consensus 89 d~~~-~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 89 DVDR-FSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred ECCc-CCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 9998 7889999999999999988888899999963
No 57
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=3e-15 Score=140.34 Aligned_cols=117 Identities=20% Similarity=0.329 Sum_probs=98.6
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--eEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCC
Q 003874 302 WVLTVALVEGVNLASSE-MTGLSDPYVVFTCNG--KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ 378 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d-~~g~sDPyV~v~l~~--~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~ 378 (790)
|.|+|+|++|+||+..+ ..+.+||||++.+++ ..++|+++.++.||.|||.|.|.+. +..+.|.|+|||++. .++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~-~~~ 79 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFND-KRK 79 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCC-CCC
Confidence 68999999999999765 356799999999987 7889999999999999999999985 567899999999998 789
Q ss_pred CCccccEEEeceecCCCCcee-EEEEccccccCcCCceeEEEEEE
Q 003874 379 ATSLGHAEINFLKHTSTELAD-MWVSLEGKLAQSAQSKVHLRIFL 422 (790)
Q Consensus 379 dd~LG~~~i~L~~l~~~~~~~-~w~~L~~k~~~~~~G~l~L~i~l 422 (790)
|++||++.+++.++....... .|+.+.. . ....|+|++.+.+
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~-~-~k~~G~i~~~l~~ 122 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNLLR-N-GKPVGELNYDLRF 122 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhhhc-C-CccceEEEEEEEe
Confidence 999999999999987666654 4555543 2 2347999999865
No 58
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=4.3e-15 Score=137.54 Aligned_cols=112 Identities=30% Similarity=0.463 Sum_probs=97.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCcc
Q 003874 304 LTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 382 (790)
Q Consensus 304 L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~-~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~L 382 (790)
|+|+|++|++|+..+..|.+||||++.+++ ..++|+++.++.||.|||+|.|.+.......|.|+|||++. .+++++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~-~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDR-GGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCC-CCCCCce
Confidence 579999999999999888999999999965 45799999999999999999999865567899999999998 7899999
Q ss_pred ccEEEeceecCCCCceeEEEEccccccCcCCceeE
Q 003874 383 GHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVH 417 (790)
Q Consensus 383 G~~~i~L~~l~~~~~~~~w~~L~~k~~~~~~G~l~ 417 (790)
|++.+++.++..+...+.|++|.++++. ..|.|.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~g~~-~~~~~~ 113 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDGQGGG-KLGAVF 113 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcCCCCc-cCceEE
Confidence 9999999999888888999999875433 345554
No 59
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.61 E-value=3.7e-15 Score=137.35 Aligned_cols=101 Identities=21% Similarity=0.384 Sum_probs=88.4
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCC----CCeEEEEEEeeCCCC
Q 003874 301 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEP----PSVLDVEVFDFDGPF 376 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~----~~~L~v~V~D~d~~~ 376 (790)
.+.|+|+|++|+||+ .|.+||||++++++++++|++++++.||.|||+|.|.+..+. ...|.|+|||.+. +
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~-~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS-L 77 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc-c
Confidence 468999999999998 578999999999999999999999999999999999974432 3589999999998 7
Q ss_pred CCCCccccEEEeceecCCC---CceeEEEEccc
Q 003874 377 DQATSLGHAEINFLKHTST---ELADMWVSLEG 406 (790)
Q Consensus 377 ~~dd~LG~~~i~L~~l~~~---~~~~~w~~L~~ 406 (790)
+++++||++.++|+.+..+ .....|++|.+
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 8899999999999998554 44578999964
No 60
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.61 E-value=3.6e-15 Score=144.48 Aligned_cols=103 Identities=20% Similarity=0.372 Sum_probs=88.5
Q ss_pred EEEEEEEeecCCCCCCCC--------------CCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeec-CCCCeEEEE
Q 003874 304 LTVALVEGVNLASSEMTG--------------LSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAME-EPPSVLDVE 368 (790)
Q Consensus 304 L~V~vl~A~~L~~~d~~g--------------~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~-~~~~~L~v~ 368 (790)
|.|+|++|++|+++|..+ .+||||++.+++++.+|+++++++||+|||+|.|.+.. +....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999988543 68999999999999999999999999999999998744 345799999
Q ss_pred EEeeCCCCCCCCccccEEEeceecCCCCc-------eeEEEEcccc
Q 003874 369 VFDFDGPFDQATSLGHAEINFLKHTSTEL-------ADMWVSLEGK 407 (790)
Q Consensus 369 V~D~d~~~~~dd~LG~~~i~L~~l~~~~~-------~~~w~~L~~k 407 (790)
|||+|. .++|++||++.+++.++...+. ...|+.|.+.
T Consensus 82 v~D~d~-~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 82 IRDWDR-VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEECCC-CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 999998 7899999999999998755442 3577777663
No 61
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.61 E-value=2.3e-15 Score=141.58 Aligned_cols=114 Identities=15% Similarity=0.225 Sum_probs=97.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeeeccc-CCCCCeEeeEEEEEeecCC----CCeEEEEEEeeCCCC
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQL-QTCDPQWHDILEFDAMEEP----PSVLDVEVFDFDGPF 376 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~-~~~kT~v~~-~tlnP~WnE~f~f~v~~~~----~~~L~v~V~D~d~~~ 376 (790)
.|+|+|++|++|+..+..+.+||||++++++ .+.+|+++. ++.||.|||.|.|.+.... ...|.|+|||++. +
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-~ 79 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-S 79 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC-C
Confidence 3899999999999999889999999999987 888999975 5899999999999985542 6899999999998 7
Q ss_pred CCCCccccEEEeceecCCCCc-----eeEEEEccccccCcCCceeEE
Q 003874 377 DQATSLGHAEINFLKHTSTEL-----ADMWVSLEGKLAQSAQSKVHL 418 (790)
Q Consensus 377 ~~dd~LG~~~i~L~~l~~~~~-----~~~w~~L~~k~~~~~~G~l~L 418 (790)
++|++||++.+++.++..+.. ...||+|..+.+. ..|.|++
T Consensus 80 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~-~~G~~~~ 125 (125)
T cd04051 80 LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK-PQGVLNF 125 (125)
T ss_pred CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC-cCeEEeC
Confidence 899999999999999865554 4789999876543 4677764
No 62
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.61 E-value=2.2e-15 Score=148.26 Aligned_cols=107 Identities=21% Similarity=0.350 Sum_probs=93.7
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeeeecccCCCCCeEeeEEEEEeecC---CCCeEEEEEEe
Q 003874 300 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFD 371 (790)
Q Consensus 300 ~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l-----~~~~~kT~v~~~tlnP~WnE~f~f~v~~~---~~~~L~v~V~D 371 (790)
..|.|.|+|++|+||++.+..|.+||||++++ +..+++|+++++++||.|||+|.|.+... ....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 57899999999999999998999999999988 23578999999999999999999985322 24579999999
Q ss_pred eCCCCCCCCccccEEEeceecCCCCceeEEEEcccc
Q 003874 372 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 407 (790)
Q Consensus 372 ~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k 407 (790)
++. ++++++||++.+++..+...+..+.|+.|.+.
T Consensus 105 ~d~-~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~ 139 (162)
T cd04020 105 HDK-LSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE 139 (162)
T ss_pred CCC-CCCCceEEEEEEeCCccccCCCccccccCChH
Confidence 998 88999999999999998777778999998763
No 63
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.60 E-value=4.2e-15 Score=139.72 Aligned_cols=105 Identities=23% Similarity=0.377 Sum_probs=94.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccC-CCCCeEeeEEEEEeecC---CCCeEEEEEEeeCCCCC
Q 003874 302 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQ-TCDPQWHDILEFDAMEE---PPSVLDVEVFDFDGPFD 377 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~-tlnP~WnE~f~f~v~~~---~~~~L~v~V~D~d~~~~ 377 (790)
|.|.|+|++|+||+..+..+.+||||+++++++.++|++..+ +.||.|||.|.|.+... ....|.|+|||.+. ++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~-~~ 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN-FS 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-CC
Confidence 579999999999999998899999999999998899999875 89999999999998544 25789999999998 78
Q ss_pred CCCccccEEEeceecCCCCceeEEEEcccc
Q 003874 378 QATSLGHAEINFLKHTSTELADMWVSLEGK 407 (790)
Q Consensus 378 ~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k 407 (790)
++++||++.+++.++..++..+.|+.|.++
T Consensus 80 ~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 999999999999999888888999999874
No 64
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=8.5e-15 Score=136.93 Aligned_cols=103 Identities=25% Similarity=0.346 Sum_probs=91.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCC
Q 003874 302 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 380 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~-~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 380 (790)
|.|+|+|++|++|+..+..|.+||||++.+++ ..++|++++++.||.|||.|.|.+ ..+.+.|.|+|||++. +++|+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v-~~~~~~L~v~v~d~~~-~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPV-TSPNQKITLEVMDYEK-VGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEe-cCCCCEEEEEEEECCC-CCCCC
Confidence 68999999999999999899999999999976 468999999999999999999987 4456799999999998 88999
Q ss_pred ccccEEEeceecCCCCceeEEEEcccc
Q 003874 381 SLGHAEINFLKHTSTELADMWVSLEGK 407 (790)
Q Consensus 381 ~LG~~~i~L~~l~~~~~~~~w~~L~~k 407 (790)
+||++.+++.++..+ ..+.||.|.+.
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 999999999998765 55778888653
No 65
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.60 E-value=4.1e-15 Score=142.31 Aligned_cols=103 Identities=23% Similarity=0.342 Sum_probs=92.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEeeeecccCCCCCeEeeEEEEEeecC---------------CCCe
Q 003874 304 LTVALVEGVNLASSEMTGLSDPYVVFTCN----GKTRTSSVQLQTCDPQWHDILEFDAMEE---------------PPSV 364 (790)
Q Consensus 304 L~V~vl~A~~L~~~d~~g~sDPyV~v~l~----~~~~kT~v~~~tlnP~WnE~f~f~v~~~---------------~~~~ 364 (790)
|+|+|++|+||+.+ ..|.+||||+++++ ...++|+++.++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78899999999997 6789999999999999999999997554 4568
Q ss_pred EEEEEEeeCCCCCCCCccccEEEeceecCCCCceeEEEEccccc
Q 003874 365 LDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 408 (790)
Q Consensus 365 L~v~V~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~ 408 (790)
|.|+|||.+. ++++++||++.+++..+........||+|.++.
T Consensus 80 l~i~V~d~~~-~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASM-VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCc-CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998 788999999999999987777789999998764
No 66
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.59 E-value=5.4e-16 Score=164.84 Aligned_cols=125 Identities=26% Similarity=0.389 Sum_probs=105.8
Q ss_pred hHhHhhhhccCCCCC-------ccccCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeeeecccCCCCC
Q 003874 280 GHFVRARLRKGSDHG-------VKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDP 347 (790)
Q Consensus 280 ~~~~~~~~~~~~d~~-------~~~~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l-----~~~~~kT~v~~~tlnP 347 (790)
++....+++++.|+- ..++.....|+|.|.+|+||.++|.+|.|||||++.+ +..+++|++++.++||
T Consensus 151 rCv~nVPslCG~DhtE~RGrl~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP 230 (683)
T KOG0696|consen 151 RCVENVPSLCGTDHTERRGRLYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNP 230 (683)
T ss_pred HHhhcCCcccCCcchhhcceEEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCc
Confidence 344566778887763 2445677899999999999999999999999999998 3457899999999999
Q ss_pred eEeeEEEEEeec-CCCCeEEEEEEeeCCCCCCCCccccEEEeceecCCCCceeEEEEccc
Q 003874 348 QWHDILEFDAME-EPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 406 (790)
Q Consensus 348 ~WnE~f~f~v~~-~~~~~L~v~V~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~ 406 (790)
+|||+|.|.+.+ +....|.|+|||||+ -+++||+|...+.++++... ..+.||.|.+
T Consensus 231 ~wNEtftf~Lkp~DkdrRlsiEvWDWDr-TsRNDFMGslSFgisEl~K~-p~~GWyKlLs 288 (683)
T KOG0696|consen 231 VWNETFTFKLKPSDKDRRLSIEVWDWDR-TSRNDFMGSLSFGISELQKA-PVDGWYKLLS 288 (683)
T ss_pred cccceeEEecccccccceeEEEEecccc-cccccccceecccHHHHhhc-chhhHHHHhh
Confidence 999999999754 346789999999999 79999999999999998654 4589999975
No 67
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.59 E-value=7.7e-15 Score=141.46 Aligned_cols=91 Identities=34% Similarity=0.556 Sum_probs=84.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCc
Q 003874 302 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 381 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 381 (790)
|.|+|+|++|+||+..+. +.+||||++++++++++|++++++.||.|||.|.|.+ .++...|.|+|||++. +++|++
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i-~~~~~~l~~~V~D~d~-~~~dd~ 78 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSV-PNPMAPLKLEVFDKDT-FSKDDS 78 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEe-cCCCCEEEEEEEECCC-CCCCCE
Confidence 789999999999999887 8899999999999999999999999999999999998 4558899999999999 899999
Q ss_pred cccEEEeceecCCC
Q 003874 382 LGHAEINFLKHTST 395 (790)
Q Consensus 382 LG~~~i~L~~l~~~ 395 (790)
||++.+++..+...
T Consensus 79 iG~a~i~l~~l~~~ 92 (145)
T cd04038 79 MGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEHHHhhhh
Confidence 99999999987543
No 68
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.58 E-value=6.7e-15 Score=142.81 Aligned_cols=101 Identities=25% Similarity=0.492 Sum_probs=88.3
Q ss_pred cCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------eEeeeecccCCCCCe
Q 003874 298 QGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----------------------------KTRTSSVQLQTCDPQ 348 (790)
Q Consensus 298 ~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~-----------------------------~~~kT~v~~~tlnP~ 348 (790)
..+.+.|.|+|++|+||+++|..|.+||||++.+.. ..++|+++++++||.
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 456889999999999999999999999999999852 236899999999999
Q ss_pred EeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCccccEEEeceecCCCCceeEEEEc
Q 003874 349 WHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSL 404 (790)
Q Consensus 349 WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L 404 (790)
|||+|.|.+.......|.|+|||++ +++||++.++++.+. +...+.||+|
T Consensus 104 WnE~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLP-SCGLDSWFKL 153 (153)
T ss_pred cccEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence 9999999985555679999999976 689999999999987 4457999987
No 69
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.57 E-value=1.1e-14 Score=138.97 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=86.7
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C--eEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEEe
Q 003874 299 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---G--KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 371 (790)
Q Consensus 299 ~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~---~--~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~D 371 (790)
...+.|.|+|++|+||++.+..|.+||||++++. . .+.||+++++++||+|||+|.|.+..+ ....|.|+|||
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~ 91 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAE 91 (136)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence 3456899999999999999989999999999983 2 256899999999999999999997543 35689999999
Q ss_pred eCCCCCCCCccccEEEeceecCCCCceeEEEEccc
Q 003874 372 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 406 (790)
Q Consensus 372 ~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~ 406 (790)
+|. ++++++||++.++... .+...++|..+..
T Consensus 92 ~d~-~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 92 STE-DGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred CCC-CCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 998 8999999999997664 3444556766543
No 70
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.57 E-value=9.3e-15 Score=137.53 Aligned_cols=94 Identities=21% Similarity=0.303 Sum_probs=83.2
Q ss_pred cCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEee-cCCCCeEEEEEEeeCCCC
Q 003874 298 QGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAM-EEPPSVLDVEVFDFDGPF 376 (790)
Q Consensus 298 ~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~-~~~~~~L~v~V~D~d~~~ 376 (790)
+...+.|+|+|++|++|+. +..|.+||||++++++++++|+++++++||+|||+|.|... .+....|.|+|||+|. +
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~-~ 101 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN-G 101 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC-C
Confidence 3456899999999999984 66788999999999999999999999999999999999742 3457899999999999 8
Q ss_pred CCCCccccEEEeceecC
Q 003874 377 DQATSLGHAEINFLKHT 393 (790)
Q Consensus 377 ~~dd~LG~~~i~L~~l~ 393 (790)
++|++||++.++|....
T Consensus 102 s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 102 WDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCeeEEEEEEecCCc
Confidence 89999999999998754
No 71
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.57 E-value=3.3e-15 Score=142.15 Aligned_cols=109 Identities=20% Similarity=0.323 Sum_probs=92.0
Q ss_pred cccCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 003874 296 KAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVE 368 (790)
Q Consensus 296 ~~~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~ 368 (790)
.+....+.|.|+|++|+||++.+..|.+||||++.+. ..+++|+++++++||.|||+|.|.+..+ ....|.|+
T Consensus 7 ~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~ 86 (133)
T cd08384 7 MYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEIT 86 (133)
T ss_pred EEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEE
Confidence 3445678999999999999999998999999999984 2467999999999999999999997543 34689999
Q ss_pred EEeeCCCCCCCCccccEEEeceecCCCCceeEEEEcccc
Q 003874 369 VFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 407 (790)
Q Consensus 369 V~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k 407 (790)
|||+|. .+++++||++.+++.. .+....+|+.+...
T Consensus 87 V~d~d~-~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~ 122 (133)
T cd08384 87 VWDKDI-GKSNDYIGGLQLGINA--KGERLRHWLDCLKN 122 (133)
T ss_pred EEeCCC-CCCccEEEEEEEecCC--CCchHHHHHHHHhC
Confidence 999998 7889999999999986 34455789887553
No 72
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.57 E-value=1.3e-14 Score=138.53 Aligned_cols=105 Identities=21% Similarity=0.302 Sum_probs=85.6
Q ss_pred cCCceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eEeeeecccCCCCCeEeeEEEEEeecCC--CCeEEEE
Q 003874 298 QGDGWVLTVALVEGVNLASSEM--TGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVE 368 (790)
Q Consensus 298 ~~~~g~L~V~vl~A~~L~~~d~--~g~sDPyV~v~l~~-----~~~kT~v~~~tlnP~WnE~f~f~v~~~~--~~~L~v~ 368 (790)
....+.|+|.|++|+||+++|. .+.+||||++++.. .++||+++++++||+|||.|.|.+..+. ...|.|+
T Consensus 11 ~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~ 90 (138)
T cd08407 11 LPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE 90 (138)
T ss_pred eCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence 3445789999999999999983 35599999999842 2569999999999999999999985432 4679999
Q ss_pred EEeeCCCCCCCCccccEEEeceecCCCCceeEEEEcc
Q 003874 369 VFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 405 (790)
Q Consensus 369 V~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~ 405 (790)
|||+|. ++++++||++.+++.. .+....+|..+.
T Consensus 91 V~d~d~-~~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 91 VLNQDS-PGQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred EEeCCC-CcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 999999 8999999999999975 344445666553
No 73
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.54 E-value=7.2e-14 Score=134.13 Aligned_cols=116 Identities=15% Similarity=0.283 Sum_probs=97.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEe-eeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCC---
Q 003874 302 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTR-TSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD--- 377 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~-kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~--- 377 (790)
..|.|.|++|++|++++ +|||.+.+++..+ ||+++.++.||.|+|.|.|.. ......|.|.||+.+...+
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~-~~~~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSN-LPPVSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecC-CCcccEEEEEEEEccCcccccc
Confidence 47999999999999875 8999999998875 999999999999999999975 4446789999987654222
Q ss_pred CCCccccEEEeceecCCCCceeEEEEccccccC---------cCCceeEEEEEEe
Q 003874 378 QATSLGHAEINFLKHTSTELADMWVSLEGKLAQ---------SAQSKVHLRIFLE 423 (790)
Q Consensus 378 ~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~---------~~~G~l~L~i~l~ 423 (790)
++++||.+.||+..+..+...+.||+|.+..+. ...++|++++.+.
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~ 139 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQ 139 (146)
T ss_pred CCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEE
Confidence 578999999999999988899999999876544 2346888888654
No 74
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.54 E-value=2.5e-14 Score=136.76 Aligned_cols=107 Identities=24% Similarity=0.398 Sum_probs=88.7
Q ss_pred ccCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeeecccCCCCCeEeeEEEEEeecCC--CCeEEEEE
Q 003874 297 AQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEV 369 (790)
Q Consensus 297 ~~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~--~---~~~kT~v~~~tlnP~WnE~f~f~v~~~~--~~~L~v~V 369 (790)
+....+.|+|+|++|++|+.++..|.+||||++++. + .+++|+++++++||.|||+|.|.+..+. ...|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 344568999999999999999999999999999984 2 3568999999999999999999974332 34799999
Q ss_pred EeeCCCCCCCCccccEEEeceecCCCCceeEEEEccc
Q 003874 370 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 406 (790)
Q Consensus 370 ~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~ 406 (790)
||++. ++++++||++.+++... +....+|+++..
T Consensus 90 ~d~~~-~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 90 LDYDR-IGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EeCCC-CCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 99999 89999999999999763 444466776654
No 75
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.54 E-value=5.7e-14 Score=132.33 Aligned_cols=114 Identities=18% Similarity=0.356 Sum_probs=92.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCc
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 381 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~-~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 381 (790)
+|.|+|++|+ |...+..+.+||||+++++++ .++|+++++++||.|||.|.|.+. ....|.|+|||++. .+.+++
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~-~~~~~~ 78 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHT-LKADVL 78 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCC-CCCCcE
Confidence 6899999998 555555888999999999877 889999999999999999999973 45789999999998 889999
Q ss_pred cccEEEeceecCCCCc-----eeEEEEccccc--cCcCCceeEEEE
Q 003874 382 LGHAEINFLKHTSTEL-----ADMWVSLEGKL--AQSAQSKVHLRI 420 (790)
Q Consensus 382 LG~~~i~L~~l~~~~~-----~~~w~~L~~k~--~~~~~G~l~L~i 420 (790)
||++.++|.++..... ...|++|.... .....|+|++.+
T Consensus 79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999998754322 23588886433 224568887764
No 76
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.54 E-value=2.6e-14 Score=134.40 Aligned_cols=90 Identities=23% Similarity=0.389 Sum_probs=81.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--eeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCC
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKT--RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 380 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~--~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 380 (790)
+|+|.|++|++|++.+..|.+||||++++++.. .+|+++++++||.|||+|.|.+..+....|.|+|||+|. +++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~-~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDL-LGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCC-CCCCc
Confidence 479999999999999999999999999998765 578888999999999999999865667899999999998 78999
Q ss_pred ccccEEEeceecC
Q 003874 381 SLGHAEINFLKHT 393 (790)
Q Consensus 381 ~LG~~~i~L~~l~ 393 (790)
+||++.+++....
T Consensus 80 ~iG~~~i~l~~~~ 92 (124)
T cd04037 80 LIGETVIDLEDRF 92 (124)
T ss_pred eeEEEEEeecccc
Confidence 9999999998753
No 77
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.54 E-value=1e-14 Score=139.46 Aligned_cols=105 Identities=21% Similarity=0.314 Sum_probs=89.7
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEEe
Q 003874 299 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 371 (790)
Q Consensus 299 ~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~--~---~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~D 371 (790)
...+.|.|+|++|+||+..|..|.+||||++.+. + .+++|+++++++||.|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 3467899999999999999999999999999983 2 256899999999999999999997433 34579999999
Q ss_pred eCCCCCCCCccccEEEeceecCCCCceeEEEEccc
Q 003874 372 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 406 (790)
Q Consensus 372 ~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~ 406 (790)
+|. ++++++||++.+++.. .+....+|++|..
T Consensus 92 ~d~-~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 92 SDR-VTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred CCC-CCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 999 8999999999999988 3555678988864
No 78
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.53 E-value=9.2e-14 Score=132.61 Aligned_cols=114 Identities=21% Similarity=0.329 Sum_probs=92.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------------CeEeeeecccCCCCCeE-eeEEEEEeecCCCCeEEEE
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCN-------------GKTRTSSVQLQTCDPQW-HDILEFDAMEEPPSVLDVE 368 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~-------------~~~~kT~v~~~tlnP~W-nE~f~f~v~~~~~~~L~v~ 368 (790)
+.+|.+++|+||+ ++..|.+||||++.+. +++++|+++++++||.| ||+|.|.+. ..+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4689999999998 7778999999999983 24689999999999999 999999973 45689999
Q ss_pred EEeeCCCCCC---CCccccEEEeceecCCC---CceeEEEEcccccc-CcCCceeEEEE
Q 003874 369 VFDFDGPFDQ---ATSLGHAEINFLKHTST---ELADMWVSLEGKLA-QSAQSKVHLRI 420 (790)
Q Consensus 369 V~D~d~~~~~---dd~LG~~~i~L~~l~~~---~~~~~w~~L~~k~~-~~~~G~l~L~i 420 (790)
|||++. .++ +++||++.+++..+..+ .....|++|..++. ....|+|.|++
T Consensus 79 V~D~~~-~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFA-KSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCC-CCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999875 333 79999999999998544 33567999986542 23467887765
No 79
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.53 E-value=3.7e-14 Score=135.82 Aligned_cols=108 Identities=18% Similarity=0.288 Sum_probs=88.4
Q ss_pred ccCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C---eEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 003874 297 AQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVE 368 (790)
Q Consensus 297 ~~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~---~---~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~ 368 (790)
+....+.|.|+|++|+||++++..|.+||||++.+. + .++||++++++.||+|||+|.|.+..+ ....|.|+
T Consensus 10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~ 89 (138)
T cd08408 10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS 89 (138)
T ss_pred EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence 444568999999999999999999999999999983 2 256999999999999999999998543 34689999
Q ss_pred EEeeCCCCCCCCccccEEEeceecCCCCceeEEEEccc
Q 003874 369 VFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 406 (790)
Q Consensus 369 V~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~ 406 (790)
|||.+. ++++++||++.+++..... ....+|+.+..
T Consensus 90 V~~~~~-~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~ 125 (138)
T cd08408 90 VYNKRK-MKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE 125 (138)
T ss_pred EEECCC-CCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence 999998 8999999999998875321 23356776643
No 80
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.53 E-value=5.5e-14 Score=132.68 Aligned_cols=107 Identities=14% Similarity=0.159 Sum_probs=85.6
Q ss_pred cccCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeeecccCCC-CCeEeeEEEEEeecCC-CCeEEEE
Q 003874 296 KAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTC-DPQWHDILEFDAMEEP-PSVLDVE 368 (790)
Q Consensus 296 ~~~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~-----~~~~kT~v~~~tl-nP~WnE~f~f~v~~~~-~~~L~v~ 368 (790)
.+++..+.|+|.|++|+||+++...+..||||++.+- -.+.||+++++|+ ||.|||+|.|++..+. ...|.|+
T Consensus 8 ~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~ 87 (135)
T cd08692 8 CFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIK 87 (135)
T ss_pred eecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEE
Confidence 4556788999999999999998667778999999882 2367999999996 6999999999986532 3478899
Q ss_pred EEeeCCCCCCCCccccEEEeceecCCCCceeEEEEc
Q 003874 369 VFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSL 404 (790)
Q Consensus 369 V~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L 404 (790)
|||++. .+++++||++.++.+.. .+...++|..+
T Consensus 88 v~d~~~-~~~n~~IG~v~lG~~~~-~~~~~~hW~~m 121 (135)
T cd08692 88 LYSRSS-VRRKHFLGQVWISSDSS-SSEAVEQWKDT 121 (135)
T ss_pred EEeCCC-CcCCceEEEEEECCccC-CchhhhhHHHH
Confidence 999998 78999999999998763 22234566555
No 81
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.52 E-value=1.3e-13 Score=129.85 Aligned_cols=115 Identities=22% Similarity=0.314 Sum_probs=96.1
Q ss_pred EEEEEEEEeecCCCCC--CCCCCCcEEEEEE------CCeEeeeecccCCC-CCeEeeEEEEEeecCCCCeEEEEEEeeC
Q 003874 303 VLTVALVEGVNLASSE--MTGLSDPYVVFTC------NGKTRTSSVQLQTC-DPQWHDILEFDAMEEPPSVLDVEVFDFD 373 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d--~~g~sDPyV~v~l------~~~~~kT~v~~~tl-nP~WnE~f~f~v~~~~~~~L~v~V~D~d 373 (790)
.|+|+|++|+||+..+ ..+..||||++++ ...+++|+++.++. ||.|||+|.|.+.......|.|+|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999888 5788999999998 34568999987765 9999999999986555568999999999
Q ss_pred CCCCCCCccccEEEeceecCCCCceeEEEEccccccC-cCCceeEEEEEE
Q 003874 374 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRIFL 422 (790)
Q Consensus 374 ~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~-~~~G~l~L~i~l 422 (790)
. . ++++||++.+++..+..+ ..|++|..+.+. ...|+|.+++++
T Consensus 83 ~-~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 S-G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred C-C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 8 6 899999999999998543 468899776554 456888888865
No 82
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.52 E-value=5.2e-14 Score=134.54 Aligned_cols=106 Identities=19% Similarity=0.324 Sum_probs=88.5
Q ss_pred cCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEE
Q 003874 298 QGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVF 370 (790)
Q Consensus 298 ~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~--~---~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~ 370 (790)
....+.|.|+|++|+||++.+..|.+||||++++. + .+++|++++++.||.|||+|.|.+..+ ....|.|+||
T Consensus 11 ~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~ 90 (136)
T cd08405 11 NPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVM 90 (136)
T ss_pred cCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 34567899999999999999989999999999982 2 356899999999999999999997533 2468999999
Q ss_pred eeCCCCCCCCccccEEEeceecCCCCceeEEEEccc
Q 003874 371 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 406 (790)
Q Consensus 371 D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~ 406 (790)
|++. ++++++||++.+++... +.....|+.+..
T Consensus 91 d~~~-~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 91 DKDR-LSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred ECCC-CCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 9998 89999999999999875 444556766654
No 83
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.52 E-value=4.7e-14 Score=134.70 Aligned_cols=109 Identities=19% Similarity=0.251 Sum_probs=87.2
Q ss_pred ccCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeeecccCCCCCeEeeEEEEEeecCC--CCeEEEEE
Q 003874 297 AQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEV 369 (790)
Q Consensus 297 ~~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~--~---~~~kT~v~~~tlnP~WnE~f~f~v~~~~--~~~L~v~V 369 (790)
+....+.|+|+|++|+||+..|..|.+||||++.+. . ++++|+++++++||.|||+|.|.+..+. ...|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 334567899999999999999999999999999972 2 3579999999999999999999985432 34799999
Q ss_pred EeeCCCCCCCCccccEEEeceecCCCCceeEEEEcccc
Q 003874 370 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 407 (790)
Q Consensus 370 ~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k 407 (790)
||+|. .+++++||++.+...... +...++|+.|...
T Consensus 89 ~d~d~-~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~ 124 (135)
T cd08410 89 YGHNV-KSSNDFIGRIVIGQYSSG-PSETNHWRRMLNS 124 (135)
T ss_pred EeCCC-CCCCcEEEEEEEcCccCC-chHHHHHHHHHhC
Confidence 99998 799999999987654332 2234678877653
No 84
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.52 E-value=6.1e-14 Score=133.12 Aligned_cols=104 Identities=26% Similarity=0.405 Sum_probs=91.5
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecC-CCCeEEEEEEeeCC
Q 003874 301 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE-PPSVLDVEVFDFDG 374 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~-~~~~L~v~V~D~d~ 374 (790)
.+.|+|+|++|+||+..+..+.+||||++.+. ...++|++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~ 91 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR 91 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence 37899999999999999888899999999985 3578999999999999999999997543 35689999999998
Q ss_pred CCCCCCccccEEEeceecCCCCceeEEEEccc
Q 003874 375 PFDQATSLGHAEINFLKHTSTELADMWVSLEG 406 (790)
Q Consensus 375 ~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~ 406 (790)
.+++++||++.+++.++... ..+.||+|.+
T Consensus 92 -~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 92 -TTRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred -CCCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 78999999999999998654 6788999976
No 85
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.51 E-value=5.7e-14 Score=133.82 Aligned_cols=92 Identities=24% Similarity=0.269 Sum_probs=82.1
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEeeeecccCCCCCeEeeEEEEEeecC----CCCeEEEEE
Q 003874 301 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-------GKTRTSSVQLQTCDPQWHDILEFDAMEE----PPSVLDVEV 369 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~-------~~~~kT~v~~~tlnP~WnE~f~f~v~~~----~~~~L~v~V 369 (790)
.+.|+|+|++|++|+..+..|.+||||++++. ..+++|+++++++||.|||+|.|.+... ....|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 46899999999999999988999999999984 3478999999999999999999998542 356899999
Q ss_pred EeeCCCCCCCCccccEEEeceecC
Q 003874 370 FDFDGPFDQATSLGHAEINFLKHT 393 (790)
Q Consensus 370 ~D~d~~~~~dd~LG~~~i~L~~l~ 393 (790)
||++. ++++++||++.++|.++.
T Consensus 95 ~d~d~-~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 95 KDYDL-LGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred EecCC-CCCCcEeEEEEEeHHHCC
Confidence 99998 788999999999999875
No 86
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.51 E-value=2.5e-13 Score=126.06 Aligned_cols=111 Identities=23% Similarity=0.289 Sum_probs=87.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEEeeCCCCCCCC
Q 003874 304 LTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGPFDQAT 380 (790)
Q Consensus 304 L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~-~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~D~d~~~~~dd 380 (790)
|+|+|++|+||+.. |.+||||+++++++ .++|+++++ .||.|||+|.|.+... ....|.|.+||.+. .+.+.
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~-~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS-KDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc-CCCee
Confidence 78999999999976 78999999999875 479999988 9999999999998543 23568888888876 55666
Q ss_pred ccccEEEeceecCCCCceeEEEEcccccc-CcCCceeEEEEE
Q 003874 381 SLGHAEINFLKHTSTELADMWVSLEGKLA-QSAQSKVHLRIF 421 (790)
Q Consensus 381 ~LG~~~i~L~~l~~~~~~~~w~~L~~k~~-~~~~G~l~L~i~ 421 (790)
.+|.+ ++..+..+...+.|++|.++.+ ....|+|+|.+.
T Consensus 77 ~~g~v--~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 116 (117)
T cd08383 77 VIGKV--ALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRAR 116 (117)
T ss_pred EEEEE--EecCcCCCCcceeEEECccCCCCCCcCceEEEEEE
Confidence 66654 4555555777889999987543 345799999875
No 87
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.51 E-value=6.8e-14 Score=133.38 Aligned_cols=105 Identities=26% Similarity=0.431 Sum_probs=87.2
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeeecccCCCCCeEeeEEEEEeecCC--CCeEEEEEEe
Q 003874 299 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFD 371 (790)
Q Consensus 299 ~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~--~---~~~kT~v~~~tlnP~WnE~f~f~v~~~~--~~~L~v~V~D 371 (790)
...+.|+|+|++|++|++++..|.+||||++++. + .+++|+++++++||.|||+|.|.+..+. ...|.|+|||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 4567899999999999999999999999999983 2 3578999999999999999999874432 2469999999
Q ss_pred eCCCCCCCCccccEEEeceecCCCCceeEEEEccc
Q 003874 372 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 406 (790)
Q Consensus 372 ~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~ 406 (790)
++. ++++++||++.+++.. .+.....|+.+..
T Consensus 91 ~~~-~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~ 122 (134)
T cd08403 91 YDR-VGHNELIGVCRVGPNA--DGQGREHWNEMLA 122 (134)
T ss_pred CCC-CCCCceeEEEEECCCC--CCchHHHHHHHHH
Confidence 998 8999999999999873 3444567877754
No 88
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.50 E-value=6.4e-14 Score=130.95 Aligned_cols=98 Identities=22% Similarity=0.286 Sum_probs=86.4
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCe-------EeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCC---CCC
Q 003874 308 LVEGVNLASSEMTGLSDPYVVFTCNGK-------TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDG---PFD 377 (790)
Q Consensus 308 vl~A~~L~~~d~~g~sDPyV~v~l~~~-------~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~---~~~ 377 (790)
.++|++|++.+..|.+||||++++... .++|+++++++||.|||+|.|.+..+....|.|+|||+|. .++
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 488999999999999999999999643 4899999999999999999998766667789999999994 147
Q ss_pred CCCccccEEEeceecCCCCceeEEEEcc
Q 003874 378 QATSLGHAEINFLKHTSTELADMWVSLE 405 (790)
Q Consensus 378 ~dd~LG~~~i~L~~l~~~~~~~~w~~L~ 405 (790)
++++||++.+++.++..+.....|++|.
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 8999999999999998887888899994
No 89
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.50 E-value=1.2e-13 Score=127.32 Aligned_cols=100 Identities=27% Similarity=0.437 Sum_probs=85.0
Q ss_pred CCCCCCcEEEEEECCe-EeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCccccEEEeceecCC-CC
Q 003874 319 MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTS-TE 396 (790)
Q Consensus 319 ~~g~sDPyV~v~l~~~-~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~LG~~~i~L~~l~~-~~ 396 (790)
.+|.+||||+++++++ ..+|++++++.||.|||.|.|.+.......|.|+|||++. + ++++||++.++|.++.. +.
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-~-~d~~iG~~~v~L~~l~~~~~ 86 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRD-R-HDPVLGSVSISLNDLIDATS 86 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCC-C-CCCeEEEEEecHHHHHhhhh
Confidence 4788999999999875 5799999999999999999999855556789999999998 7 89999999999998743 44
Q ss_pred ceeEEEEccccccCcCCceeEEEEEEec
Q 003874 397 LADMWVSLEGKLAQSAQSKVHLRIFLEN 424 (790)
Q Consensus 397 ~~~~w~~L~~k~~~~~~G~l~L~i~l~~ 424 (790)
..+.|++|++ ...|+|++++.+.+
T Consensus 87 ~~~~w~~L~~----~~~G~i~~~~~~~p 110 (111)
T cd04052 87 VGQQWFPLSG----NGQGRIRISALWKP 110 (111)
T ss_pred ccceeEECCC----CCCCEEEEEEEEec
Confidence 5689999986 35799999986643
No 90
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.48 E-value=1.8e-13 Score=128.37 Aligned_cols=106 Identities=22% Similarity=0.346 Sum_probs=88.7
Q ss_pred ccCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecC---CCCeEEEE
Q 003874 297 AQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVE 368 (790)
Q Consensus 297 ~~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~---~~~~L~v~ 368 (790)
+....+.|+|+|++|++|++.+..+.+||||++.+. ....+|++++++.||.|||.|.|..... ....|.|+
T Consensus 10 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 10 YDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred EeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 344567899999999999999988999999999972 2468999999999999999999963232 24689999
Q ss_pred EEeeCCCCCCCCccccEEEeceecCCCCceeEEEEc
Q 003874 369 VFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSL 404 (790)
Q Consensus 369 V~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L 404 (790)
|||++. + .+++||++.++++++..++....|+.|
T Consensus 90 v~d~~~-~-~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 90 VLDEDR-F-GNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred EEEcCC-c-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence 999998 6 889999999999999877776666543
No 91
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.48 E-value=4.6e-14 Score=134.16 Aligned_cols=107 Identities=26% Similarity=0.366 Sum_probs=92.1
Q ss_pred cCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCCCCeEeeEEEEEeecCC--CCeEEEEEE
Q 003874 298 QGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVF 370 (790)
Q Consensus 298 ~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~-----~~~kT~v~~~tlnP~WnE~f~f~v~~~~--~~~L~v~V~ 370 (790)
....+.|.|+|++|+||+..+..+.+||||++++.. .+++|+++.++.||.|||+|.|.+.... ...|.|+||
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~ 89 (134)
T cd00276 10 LPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVV 89 (134)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence 334578999999999999998888999999999843 2569999999999999999999975443 578999999
Q ss_pred eeCCCCCCCCccccEEEeceecCCCCceeEEEEcccc
Q 003874 371 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 407 (790)
Q Consensus 371 D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k 407 (790)
|.+. ++++++||++.+++.. .+...+.|++|...
T Consensus 90 d~~~-~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 90 DKDS-VGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred ecCC-CCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 9998 7889999999999999 56667889999764
No 92
>PLN03008 Phospholipase D delta
Probab=99.46 E-value=3.2e-13 Score=157.54 Aligned_cols=122 Identities=21% Similarity=0.322 Sum_probs=102.2
Q ss_pred ceEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCe-Eee
Q 003874 301 GWVLTVALVEGVNLASSEM------------------------------------------TGLSDPYVVFTCNGK-TRT 337 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~~~d~------------------------------------------~g~sDPyV~v~l~~~-~~k 337 (790)
.|.|.++|.+|++|+.+|. .+++||||+|.++++ ..|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 5788899999998875331 347899999999865 459
Q ss_pred eecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCccccEEEeceecCCCCceeEEEEccccccCcC--Cce
Q 003874 338 SSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSA--QSK 415 (790)
Q Consensus 338 T~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~~--~G~ 415 (790)
|+++++++||+|||+|.|.+ .++...|.|+|||.|. ++ +++||++.||+.++..+...+.|++|.+..+... +++
T Consensus 93 TrVi~n~~NPvWNE~F~f~v-ah~~s~L~f~VkD~D~-~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~k 169 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISI-AHPFAYLEFQVKDDDV-FG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETA 169 (868)
T ss_pred EEeCCCCCCCCcceeEEEEe-cCCCceEEEEEEcCCc-cC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcE
Confidence 99999999999999999998 4556799999999998 76 5899999999999999999999999987655443 579
Q ss_pred eEEEEEEecC
Q 003874 416 VHLRIFLENN 425 (790)
Q Consensus 416 l~L~i~l~~~ 425 (790)
||+++.+.+.
T Consensus 170 l~v~lqf~pv 179 (868)
T PLN03008 170 IFIDMKFTPF 179 (868)
T ss_pred EEEEEEEEEc
Confidence 9999976543
No 93
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.46 E-value=6.3e-14 Score=134.16 Aligned_cols=105 Identities=16% Similarity=0.239 Sum_probs=86.7
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEEee
Q 003874 300 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 372 (790)
Q Consensus 300 ~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~-----~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~D~ 372 (790)
..+.|.|+|++|+||++.+ .+.+||||++.+.. .+++|++++++.||.|||+|.|.+..+ ....|.|+|||.
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~ 91 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQS 91 (137)
T ss_pred CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeC
Confidence 4568999999999999998 78899999999742 366999999999999999999998543 236899999999
Q ss_pred CCCCCCCCccccEEEeceecCCCCceeEEEEccc
Q 003874 373 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 406 (790)
Q Consensus 373 d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~ 406 (790)
+. .+++++||++.++......+...++|..+..
T Consensus 92 ~~-~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 92 GG-VRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred CC-CCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 98 7999999999999765545555566766543
No 94
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=6.4e-13 Score=149.44 Aligned_cols=173 Identities=20% Similarity=0.256 Sum_probs=126.4
Q ss_pred ccCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEEe
Q 003874 297 AQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 371 (790)
Q Consensus 297 ~~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~---~~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~D 371 (790)
+......|+|+|++|++|+++|..|.+||||++++. ..+.+|++.++++||.|||+|.|.+... ....|.+.|||
T Consensus 162 Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~ 241 (421)
T KOG1028|consen 162 YDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYD 241 (421)
T ss_pred ecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEe
Confidence 344567999999999999999977889999999994 4678999999999999999999996433 46799999999
Q ss_pred eCCCCCCCCccccEEEeceecCCCCceeEEEEccccc--cCcCCceeEEEEEEecCCCcchhhhhhhhhhhhhccccccc
Q 003874 372 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL--AQSAQSKVHLRIFLENNNGVETIKEYLTKMEKEVGKKLNLR 449 (790)
Q Consensus 372 ~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~--~~~~~G~l~L~i~l~~~~~~~~l~~~l~kleke~g~k~~~~ 449 (790)
+|+ |+++++||++.++|..+........|.+|.... .....|+|.+.+.+.+..+.-. -.+.+...- -.+.
T Consensus 242 ~dr-fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~lt--v~v~kar~L----~~~~ 314 (421)
T KOG1028|consen 242 FDR-FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLT--VVVIKARNL----KSMD 314 (421)
T ss_pred cCC-cccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEE--EEEEEecCC----Cccc
Confidence 999 999999999999999987777778999997642 2223378888886655533222 111111100 1122
Q ss_pred CCCCCccccccccCCCCcccccceecc
Q 003874 450 SPHRNSTFQKLFALPPEEFLIKDFTCY 476 (790)
Q Consensus 450 s~~k~~~f~~lF~lp~~E~l~~~f~C~ 476 (790)
..+-++.|.+..-++.+.++...-++.
T Consensus 315 ~~~~~d~~Vk~~l~~~~~~~~kkkT~~ 341 (421)
T KOG1028|consen 315 VGGLSDPYVKVTLLDGDKRLSKKKTSV 341 (421)
T ss_pred CCCCCCccEEEEEecCCceeeeeeeec
Confidence 345567888877666664444433333
No 95
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.42 E-value=2.3e-13 Score=114.28 Aligned_cols=65 Identities=46% Similarity=0.860 Sum_probs=48.2
Q ss_pred cccccccCCCCcccccceeccccc-ccccCceEEEeccEEEEEeccCCCeE-EEEEecccceeeEEc
Q 003874 456 TFQKLFALPPEEFLIKDFTCYLKR-KMPLQGRLFLSARIVGFYANLFGNKT-KFFFLWEDIEDIQIL 520 (790)
Q Consensus 456 ~f~~lF~lp~~E~l~~~f~C~l~~-~i~~~Grlyis~~~icF~s~~~g~~t-~~~i~~~dI~~I~k~ 520 (790)
.|++.|+||.+|.|+.+|.|++.+ .++.+|+||+|.+++||+|+.++..+ +++|||+||.+|+|.
T Consensus 2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~ 68 (69)
T PF02893_consen 2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKE 68 (69)
T ss_dssp ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE
T ss_pred cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEe
Confidence 689999999999999999999988 89999999999999999999999888 999999999999985
No 96
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.42 E-value=2.3e-12 Score=118.54 Aligned_cols=94 Identities=16% Similarity=0.315 Sum_probs=74.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEee------
Q 003874 304 LTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDF------ 372 (790)
Q Consensus 304 L~V~vl~A~~L~~~d~~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~------ 372 (790)
|.|+|.+|+||+ |.+||||++.+. ..+.+|+++++|+||+|||+|.|.+. ....|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence 689999999995 458999999884 24689999999999999999999983 477999999998
Q ss_pred -CCCCCCCCccccEEEecee--cCCCCceeEEEEcc
Q 003874 373 -DGPFDQATSLGHAEINFLK--HTSTELADMWVSLE 405 (790)
Q Consensus 373 -d~~~~~dd~LG~~~i~L~~--l~~~~~~~~w~~L~ 405 (790)
|. .++|+++|.+.+.|+. +...+....-+.|.
T Consensus 74 ~d~-~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~ 108 (118)
T cd08686 74 LDG-EGTDAIMGKGQIQLDPQSLQTKKWQEKVISMN 108 (118)
T ss_pred ccc-cCcccEEEEEEEEECHHHhccCCeeEEEEEec
Confidence 45 5789999888887754 33333334444443
No 97
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.39 E-value=1.1e-12 Score=166.16 Aligned_cols=118 Identities=18% Similarity=0.239 Sum_probs=100.0
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeeecccCCCCCeEeeEEEEEeecCC-CCeEEEEEEeeCCCC
Q 003874 299 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEP-PSVLDVEVFDFDGPF 376 (790)
Q Consensus 299 ~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~-~~kT~v~~~tlnP~WnE~f~f~v~~~~-~~~L~v~V~D~d~~~ 376 (790)
.-.|.|+|+|++|+||. +..|.+||||+++++++ +.||++++++.||.|||.|+|.+..++ ...|+|+|||+|. |
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~-f 2053 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT-F 2053 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc-c
Confidence 45789999999999998 44789999999999965 889999999999999999998874443 3679999999998 8
Q ss_pred CCCCccccEEEeceecCCCCceeEEEEccccccCcCCce---eEEEEEE
Q 003874 377 DQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSK---VHLRIFL 422 (790)
Q Consensus 377 ~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~~~G~---l~L~i~l 422 (790)
++| .+|++.|++.++..++....||+|.+++ .+.|+ |++.+..
T Consensus 2054 ~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~--~k~G~~~~~~~e~~w 2099 (2102)
T PLN03200 2054 GKS-SLGKVTIQIDRVVMEGTYSGEYSLNPES--NKDGSSRTLEIEFQW 2099 (2102)
T ss_pred CCC-CCceEEEEHHHHhcCceeeeeeecCccc--ccCCCcceEEEEEEe
Confidence 654 9999999999999899999999998643 23566 8887733
No 98
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=9.7e-13 Score=145.16 Aligned_cols=123 Identities=22% Similarity=0.393 Sum_probs=103.3
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCC--
Q 003874 299 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPF-- 376 (790)
Q Consensus 299 ~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~-- 376 (790)
-|...++++|+.|.+|.++|..|++||||...++..+.+|+++...+||+|||.|.|+. ......|++.|||+|..+
T Consensus 292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfec-hnstdrikvrvwded~dlks 370 (1283)
T KOG1011|consen 292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFEC-HNSTDRIKVRVWDEDNDLKS 370 (1283)
T ss_pred ccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeee-cCCCceeEEEEecCcccHHH
Confidence 37889999999999999999999999999999999999999999999999999999998 456788999999998521
Q ss_pred --------CCCCccccEEEeceecCCCCceeEEEEcccccc-CcCCceeEEEE--EEec
Q 003874 377 --------DQATSLGHAEINFLKHTSTELADMWVSLEGKLA-QSAQSKVHLRI--FLEN 424 (790)
Q Consensus 377 --------~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~-~~~~G~l~L~i--~l~~ 424 (790)
..|||||++.|.+..+ ++..+.||.|+.+-. .+..|.|.|.| .+.+
T Consensus 371 klrqkl~resddflgqtvievrtl--sgemdvwynlekrtdksavsgairlhisveikg 427 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHISVEIKG 427 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEec--ccchhhhcchhhccchhhccceEEEEEEEEEcC
Confidence 4789999999999885 456789999987632 24567655555 4443
No 99
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.35 E-value=3.7e-12 Score=117.03 Aligned_cols=88 Identities=18% Similarity=0.334 Sum_probs=74.7
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECC------eEeeeecccCCCCCeEeeEEEEEeec----CCCCeEEEEEEeeCCC
Q 003874 306 VALVEGVNLASSEMTGLSDPYVVFTCNG------KTRTSSVQLQTCDPQWHDILEFDAME----EPPSVLDVEVFDFDGP 375 (790)
Q Consensus 306 V~vl~A~~L~~~d~~g~sDPyV~v~l~~------~~~kT~v~~~tlnP~WnE~f~f~v~~----~~~~~L~v~V~D~d~~ 375 (790)
+-.++|++|+..|..|.+||||++++.+ ..++|+++++++||.|| .|.|.+.. +....|.|+|||++.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~- 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS- 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence 3457999999999999999999999843 25899999999999999 68876422 236799999999999
Q ss_pred CCCCCccccEEEeceecCCC
Q 003874 376 FDQATSLGHAEINFLKHTST 395 (790)
Q Consensus 376 ~~~dd~LG~~~i~L~~l~~~ 395 (790)
+++|++||++.+++..+..+
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 88999999999999998643
No 100
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.31 E-value=8.1e-12 Score=108.03 Aligned_cols=82 Identities=32% Similarity=0.553 Sum_probs=74.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCC
Q 003874 304 LTVALVEGVNLASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 380 (790)
Q Consensus 304 L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~---~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 380 (790)
|+|+|++|+||+..+..+..||||++.+++ ..++|+++.++.+|.|+|+|.|.+..+....|.|+|||.+. .++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~-~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDS-FGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETS-SSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCC-CCCCC
Confidence 789999999999988888999999999976 67999999999999999999999767777779999999998 78899
Q ss_pred ccccEE
Q 003874 381 SLGHAE 386 (790)
Q Consensus 381 ~LG~~~ 386 (790)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999874
No 101
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.25 E-value=1e-11 Score=101.65 Aligned_cols=59 Identities=42% Similarity=0.673 Sum_probs=56.1
Q ss_pred cCCCCcccccceecccccccccCceEEEeccEEEEEeccCCCeE-EEEEecccceeeEEc
Q 003874 462 ALPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKT-KFFFLWEDIEDIQIL 520 (790)
Q Consensus 462 ~lp~~E~l~~~f~C~l~~~i~~~Grlyis~~~icF~s~~~g~~t-~~~i~~~dI~~I~k~ 520 (790)
+||++|.|+++|.|++.+.++.+|+||+|.+++||+|+.+|+.+ +++||++||.+|+|.
T Consensus 1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence 37899999999999999889999999999999999999999988 999999999999985
No 102
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=7.1e-11 Score=133.02 Aligned_cols=141 Identities=23% Similarity=0.259 Sum_probs=105.2
Q ss_pred CccccCCCCCCcccceeeeeeee-eehhhhhhhhhHhHhhh---hccC-CCC--CccccCCceEEEEEEEEeecCCCCCC
Q 003874 247 GLEFYGLDLPDSFGELISCGILV-IQLEQVFNMVGHFVRAR---LRKG-SDH--GVKAQGDGWVLTVALVEGVNLASSEM 319 (790)
Q Consensus 247 ~l~~~gl~l~d~~g~~~v~~~lv-l~~~~~~~~~~~~~~~~---~~~~-~d~--~~~~~~~~g~L~V~vl~A~~L~~~d~ 319 (790)
.++|..|...|-+|++.+.+.-+ +... . ..... +++. .... ++. +..+.+..|.|+|.|++|+||+.++.
T Consensus 239 V~~~drfsr~~~iGev~~~l~~~~~~~~-~-~~w~~-l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~ 315 (421)
T KOG1028|consen 239 VYDFDRFSRHDFIGEVILPLGEVDLLST-T-LFWKD-LQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDV 315 (421)
T ss_pred EEecCCcccccEEEEEEecCcccccccc-c-eeeec-cccccCCcccccceEEEEEEeecCCCeEEEEEEEecCCCcccC
Confidence 78888899999999999872211 1111 0 00111 1111 1111 122 23577789999999999999999999
Q ss_pred CCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecCC--CCeEEEEEEeeCCCCCCCCccccEEEecee
Q 003874 320 TGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDFDGPFDQATSLGHAEINFLK 391 (790)
Q Consensus 320 ~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~~--~~~L~v~V~D~d~~~~~dd~LG~~~i~L~~ 391 (790)
.+.+||||++.+- -.+.+|.+.++++||+|||+|.|.+..+. ...|.|+|||+|. ++++++||++.+....
T Consensus 316 ~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~-~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 316 GGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDT-LGSNDLIGRCILGSDS 393 (421)
T ss_pred CCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEccc-ccccceeeEEEecCCC
Confidence 9999999999982 23679999999999999999999885443 3479999999999 8999999998888765
No 103
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.17 E-value=1.7e-10 Score=101.73 Aligned_cols=100 Identities=32% Similarity=0.604 Sum_probs=87.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCcc
Q 003874 304 LTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 382 (790)
Q Consensus 304 L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~-~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~L 382 (790)
|.|.|++|++|......+..+|||.+.+.. ..++|++..++.||.|++.|.|.+.......|.|+||+.+. ...+.+|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~-~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDR-FSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCC-CCCCcee
Confidence 578999999998877677899999999987 88899999999999999999999855467889999999998 6778999
Q ss_pred ccEEEeceecC-CCCceeEEEEc
Q 003874 383 GHAEINFLKHT-STELADMWVSL 404 (790)
Q Consensus 383 G~~~i~L~~l~-~~~~~~~w~~L 404 (790)
|++.+++..+. .......|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999987 66777788875
No 104
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.12 E-value=1.7e-10 Score=136.80 Aligned_cols=122 Identities=28% Similarity=0.415 Sum_probs=107.8
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCC
Q 003874 300 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ 378 (790)
Q Consensus 300 ~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~-~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~ 378 (790)
..|-|+|.+..|.||+..|.+|.+||||++.++++ .++|+++++|+||.|||.|...+.......+.+.|+|+|. -.+
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~-~~k 1116 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDS-GEK 1116 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeeccc-CCC
Confidence 47899999999999999999999999999999876 6899999999999999999999977788899999999998 689
Q ss_pred CCccccEEEeceecCCCCceeEEEEccccccCcCCceeEEEEEE
Q 003874 379 ATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 422 (790)
Q Consensus 379 dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~~~G~l~L~i~l 422 (790)
++.||.+.++|..+..+.....-.+|+++......|.+|....+
T Consensus 1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~ 1160 (1227)
T COG5038 1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNF 1160 (1227)
T ss_pred ccccccccccHhhcCcCCccceeeeccCcceEecccEeecceec
Confidence 99999999999999888887778899886544456666665544
No 105
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.10 E-value=4.8e-10 Score=99.32 Aligned_cols=93 Identities=28% Similarity=0.499 Sum_probs=80.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---EeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCC
Q 003874 304 LTVALVEGVNLASSEMTGLSDPYVVFTCNGK---TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 380 (790)
Q Consensus 304 L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~---~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 380 (790)
|.|.|++|++|......+..+|||++++... ..+|+++.++.||.|||.|.|.+.......|.|+|||.+. .+.+.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~-~~~~~ 80 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDR-FGRDD 80 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCC-ccCCc
Confidence 7899999999988876678999999999764 7899999999999999999999854448899999999997 66789
Q ss_pred ccccEEEeceecCCCCc
Q 003874 381 SLGHAEINFLKHTSTEL 397 (790)
Q Consensus 381 ~LG~~~i~L~~l~~~~~ 397 (790)
++|.+.+++..+..+..
T Consensus 81 ~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 81 FIGQVTIPLSDLLLGGR 97 (101)
T ss_pred eeEEEEEEHHHcccCcc
Confidence 99999999988765544
No 106
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.09 E-value=4.8e-10 Score=105.94 Aligned_cols=92 Identities=22% Similarity=0.284 Sum_probs=77.4
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEEC---CeEeeeecccCCCC--CeEeeEEEEEeecC--------------
Q 003874 304 LTVALVEGVNLASSE--MTG--LSDPYVVFTCN---GKTRTSSVQLQTCD--PQWHDILEFDAMEE-------------- 360 (790)
Q Consensus 304 L~V~vl~A~~L~~~d--~~g--~sDPyV~v~l~---~~~~kT~v~~~tln--P~WnE~f~f~v~~~-------------- 360 (790)
|+|.|.+|+|++..+ ..| .+||||+..+. ..+++|.++.+++| |.||++|.|.+...
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966544 366 49999999985 35789999999999 99999999986541
Q ss_pred ---------CCCeEEEEEEeeCCCCCCCCccccEEEeceecCCCC
Q 003874 361 ---------PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTE 396 (790)
Q Consensus 361 ---------~~~~L~v~V~D~d~~~~~dd~LG~~~i~L~~l~~~~ 396 (790)
....|.++|||.|. +++|++||+++++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~-~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDK-FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcc-cCCCCcceEEEEEhhhccccc
Confidence 24579999999999 899999999999999886544
No 107
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.09 E-value=2.6e-11 Score=136.02 Aligned_cols=131 Identities=21% Similarity=0.469 Sum_probs=106.1
Q ss_pred cccCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C-----------e------------------EeeeecccCC
Q 003874 296 KAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G-----------K------------------TRTSSVQLQT 344 (790)
Q Consensus 296 ~~~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~--~-----------~------------------~~kT~v~~~t 344 (790)
+...+...|.|.+.+|+||.++|.+|.||||+++.+- . + .+-|+++++|
T Consensus 108 ~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T 187 (1103)
T KOG1328|consen 108 QNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT 187 (1103)
T ss_pred CCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc
Confidence 4455667788999999999999999999999987651 0 0 1357889999
Q ss_pred CCCeEeeEEEEEeecCCCCeEEEEEEeeCCC--------------------------------CCC---CCccccEEEec
Q 003874 345 CDPQWHDILEFDAMEEPPSVLDVEVFDFDGP--------------------------------FDQ---ATSLGHAEINF 389 (790)
Q Consensus 345 lnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~--------------------------------~~~---dd~LG~~~i~L 389 (790)
+||+|+|.|.|.+.+-....+++.+||+|.. .+. |||||.+.||+
T Consensus 188 LnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl 267 (1103)
T KOG1328|consen 188 LNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPL 267 (1103)
T ss_pred CCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccch
Confidence 9999999999999666778999999999821 133 79999999999
Q ss_pred eecCCCCceeEEEEccccccC-cCCceeEEEEEEecCCC
Q 003874 390 LKHTSTELADMWVSLEGKLAQ-SAQSKVHLRIFLENNNG 427 (790)
Q Consensus 390 ~~l~~~~~~~~w~~L~~k~~~-~~~G~l~L~i~l~~~~~ 427 (790)
.+++..+ .+.||.|++++.. ..+|+++|++||+...+
T Consensus 268 ~EiP~~G-ld~WFkLepRS~~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 268 AEIPPDG-LDQWFKLEPRSDKSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred hcCCcch-HHHHhccCcccccccccceEEEEEEEeeecc
Confidence 9997655 4899999988644 56899999999876543
No 108
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.07 E-value=2.9e-10 Score=128.35 Aligned_cols=119 Identities=23% Similarity=0.267 Sum_probs=104.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCc
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 381 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~-~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 381 (790)
.|.|.|.+|+||++.+..|.+||||.+.+... ..||.++.+++.|.|.|.|.|.+ +..-..|.|-|||.|. ++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~i-P~~F~~l~fYv~D~d~--~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEI-PRTFRYLSFYVWDRDL--KRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEec-CcceeeEEEEEecccc--ccccc
Confidence 58999999999999999999999999999754 67999999999999999999998 5556789999999994 99999
Q ss_pred cccEEEeceecCCCCceeEEEEcccc-ccCcCCceeEEEEEEec
Q 003874 382 LGHAEINFLKHTSTELADMWVSLEGK-LAQSAQSKVHLRIFLEN 424 (790)
Q Consensus 382 LG~~~i~L~~l~~~~~~~~w~~L~~k-~~~~~~G~l~L~i~l~~ 424 (790)
||.+-|.-..+......+.|+.|..- .....+|++||++.+..
T Consensus 83 IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e 126 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTE 126 (800)
T ss_pred cceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecc
Confidence 99999998888777788999999764 23356899999997654
No 109
>PLN02223 phosphoinositide phospholipase C
Probab=99.02 E-value=2.4e-09 Score=121.10 Aligned_cols=118 Identities=15% Similarity=0.173 Sum_probs=93.3
Q ss_pred ceEEEEEEEEeecCCC-----CCCCCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEE
Q 003874 301 GWVLTVALVEGVNLAS-----SEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF 370 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~~-----~d~~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~ 370 (790)
...|+|+|+.|.+++. .+.....||||+|.+. ..+++|.+..++.||.|||+|.|.+..+....|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 3579999999998751 1223567999999984 23567888889999999999999998888889999999
Q ss_pred eeCCCCCCCCccccEEEeceecCCCCceeEEEEccccccCc-CCceeEEEEEE
Q 003874 371 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFL 422 (790)
Q Consensus 371 D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~-~~G~l~L~i~l 422 (790)
|+|. .+.++|+|++.+|+..+..|.. +++|..+.+.. ...+|.+++.+
T Consensus 488 D~D~-~~~ddfiGQ~~LPv~~Lr~GyR---~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 488 DYEV-STADAFCGQTCLPVSELIEGIR---AVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred ecCC-CCCCcEEEEEecchHHhcCCce---eEeccCCCcCCCCCceEEEEEEe
Confidence 9998 6889999999999999988764 56787665544 33466666643
No 110
>PLN02952 phosphoinositide phospholipase C
Probab=98.90 E-value=1.1e-08 Score=118.30 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=91.5
Q ss_pred ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEE
Q 003874 301 GWVLTVALVEGVNLASS------EMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEV 369 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~~~------d~~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V 369 (790)
...|+|.|+.|.+++.. +.....||||++.+- ..+.+|+++.++.||.|||+|.|.+..+....|.|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 35799999999887431 112345999999983 3567999999999999999999998777778899999
Q ss_pred EeeCCCCCCCCccccEEEeceecCCCCceeEEEEccccccCc-CCceeEEEEE
Q 003874 370 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIF 421 (790)
Q Consensus 370 ~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~-~~G~l~L~i~ 421 (790)
||+|. .+.++++|++.+|+..+..|.. |++|..+.+.. ....|.+++.
T Consensus 549 ~D~D~-~~~ddfiGq~~lPv~~Lr~GyR---~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDM-SEKDDFGGQTCLPVSELRPGIR---SVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred EecCC-CCCCCeEEEEEcchhHhcCCce---eEeCcCCCCCCCCCEEEEEEEE
Confidence 99998 7889999999999999988764 88997655433 2334444443
No 111
>PLN02270 phospholipase D alpha
Probab=98.87 E-value=1.4e-08 Score=119.20 Aligned_cols=121 Identities=19% Similarity=0.192 Sum_probs=101.1
Q ss_pred ceEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCe-EeeeecccCC-CCCeEeeEEEEEeecC
Q 003874 301 GWVLTVALVEGVNLASSE------------------MTGLSDPYVVFTCNGK-TRTSSVQLQT-CDPQWHDILEFDAMEE 360 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~~~d------------------~~g~sDPyV~v~l~~~-~~kT~v~~~t-lnP~WnE~f~f~v~~~ 360 (790)
.|.|.|+|++|++|+..+ ..+.+||||.+.+++. ..||+++.+. .||+|+|+|.+.+ ..
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~-ah 85 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYC-AH 85 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEee-cc
Confidence 578999999999998631 1357899999999765 4599999874 6999999999998 66
Q ss_pred CCCeEEEEEEeeCCCCCCCCccccEEEeceecCCCCceeEEEEccccccCcC--CceeEEEEEEec
Q 003874 361 PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSA--QSKVHLRIFLEN 424 (790)
Q Consensus 361 ~~~~L~v~V~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~~--~G~l~L~i~l~~ 424 (790)
....+.|.|.|.|. ++. .+||.+.||+.++..+...+.|+++.+..+... +.+||+++.+..
T Consensus 86 ~~~~v~f~vkd~~~-~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~ 149 (808)
T PLN02270 86 MASNIIFTVKDDNP-IGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFE 149 (808)
T ss_pred CcceEEEEEecCCc-cCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEE
Confidence 77899999999997 665 599999999999999989999999987766554 348999996654
No 112
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.82 E-value=2.5e-08 Score=115.03 Aligned_cols=118 Identities=15% Similarity=0.154 Sum_probs=93.2
Q ss_pred ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEE
Q 003874 301 GWVLTVALVEGVNLASS------EMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEV 369 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~~~------d~~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V 369 (790)
..+|.|+|+.|.+++.. +.....||||++.+- ..+.+|++..++.||.|||+|.|.+..+.-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 35799999999986421 223457999999983 2356889989999999999999998877788999999
Q ss_pred EeeCCCCCCCCccccEEEeceecCCCCceeEEEEccccccCc-CCceeEEEEEE
Q 003874 370 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFL 422 (790)
Q Consensus 370 ~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~-~~G~l~L~i~l 422 (790)
+|+|. .+.|+|+|+..+|+..+..|-. .++|..+.+.. ...+|.+++.+
T Consensus 548 ~d~d~-~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDI-NEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EECCC-CCCCCEEEEEEcchHHhhCccc---eEeccCCCcCCCCCCeeEEEEEe
Confidence 99998 6889999999999999988765 45776655444 34567777654
No 113
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.73 E-value=9.1e-08 Score=110.29 Aligned_cols=117 Identities=14% Similarity=0.187 Sum_probs=91.2
Q ss_pred ceEEEEEEEEeecCC----CC--CCCCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEE
Q 003874 301 GWVLTVALVEGVNLA----SS--EMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEV 369 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~----~~--d~~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V 369 (790)
...|+|+|+.|.+++ .. +.....||||++.+- ..+.+|+++.++.||.|||+|.|.+..+.-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 357999999998742 11 123457999999983 3467999999999999999999998777788999999
Q ss_pred EeeCCCCCCCCccccEEEeceecCCCCceeEEEEccccccCc-CCceeEEEEE
Q 003874 370 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIF 421 (790)
Q Consensus 370 ~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~-~~G~l~L~i~ 421 (790)
+|+|. .+.++|+|++.+|+..+..|-. .++|..+.+.. ...+|.+++.
T Consensus 531 ~d~D~-~~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g~~l~~a~Lfv~~~ 579 (581)
T PLN02222 531 HEYDM-SEKDDFGGQTCLPVWELSQGIR---AFPLHSRKGEKYKSVKLLVKVE 579 (581)
T ss_pred EECCC-CCCCcEEEEEEcchhhhhCccc---eEEccCCCcCCCCCeeEEEEEE
Confidence 99998 6889999999999999987765 45776554443 3445666654
No 114
>PLN02228 Phosphoinositide phospholipase C
Probab=98.68 E-value=1.4e-07 Score=108.55 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=93.5
Q ss_pred eEEEEEEEEeecCCC---CC---CCCCCCcEEEEEEC-----CeEeeeecccCCCCCeE-eeEEEEEeecCCCCeEEEEE
Q 003874 302 WVLTVALVEGVNLAS---SE---MTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQW-HDILEFDAMEEPPSVLDVEV 369 (790)
Q Consensus 302 g~L~V~vl~A~~L~~---~d---~~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~W-nE~f~f~v~~~~~~~L~v~V 369 (790)
..|+|+|+.|.+|+. .+ .....||||++.+- ..+++|+++.++.||.| ||+|.|.+..+.-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 11 13347999999983 34679999988999999 99999998777778999999
Q ss_pred EeeCCCCCCCCccccEEEeceecCCCCceeEEEEccccccCc-CCceeEEEEEEec
Q 003874 370 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFLEN 424 (790)
Q Consensus 370 ~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~-~~G~l~L~i~l~~ 424 (790)
+|+|. .+.++++|++.+|+..+..|-. .++|.++.+.. ..++|.+++.+..
T Consensus 511 ~D~d~-~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDN-DTQNDFAGQTCLPLPELKSGVR---AVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCC-CCCCCEEEEEEcchhHhhCCee---EEEccCCCCCCCCCeEEEEEEEEcC
Confidence 99998 6889999999999999977765 45676554443 3466888876643
No 115
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.67 E-value=6e-08 Score=106.82 Aligned_cols=130 Identities=16% Similarity=0.350 Sum_probs=104.3
Q ss_pred eEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEeeeecccCCCCCeEe-eEEEEEeecC--CCCeEEEEEEeeCCCCC
Q 003874 302 WVLTVALVEGVNLASSEM-TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWH-DILEFDAMEE--PPSVLDVEVFDFDGPFD 377 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~-~g~sDPyV~v~l~~~~~kT~v~~~tlnP~Wn-E~f~f~v~~~--~~~~L~v~V~D~d~~~~ 377 (790)
|.|-|.|..|++||-+|. ....|.||.+++++..+||.+..+++||+|| +.|.|++.+. ...+|.|.+.|+|. ++
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-ys 81 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-YS 81 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc-cc
Confidence 678899999999999986 4467999999999999999999999999999 7899998443 35689999999999 99
Q ss_pred CCCccccEEEeceecCC----------CCceeEEEEccccccCcCCceeEEEEEEecCCCcchhhh
Q 003874 378 QATSLGHAEINFLKHTS----------TELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVETIKE 433 (790)
Q Consensus 378 ~dd~LG~~~i~L~~l~~----------~~~~~~w~~L~~k~~~~~~G~l~L~i~l~~~~~~~~l~~ 433 (790)
.+|-||.+.|+++.+.. +.-...|+|+-..- ....|+|++.+.+..-++....++
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hgirgeinvivkvdlfndlnkf~q 146 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HGIRGEINVIVKVDLFNDLNKFPQ 146 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-ccccceeEEEEEEeehhhhhhccc
Confidence 99999999999988732 23346799986531 134688988887665555544443
No 116
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.67 E-value=8.1e-08 Score=110.76 Aligned_cols=117 Identities=17% Similarity=0.310 Sum_probs=91.6
Q ss_pred EEEEEEEEeecCCCC-CC---CCCCCcEEEEEECC-----eEeeee-cccCCCCCeEeeEEEEEeecCCCCeEEEEEEee
Q 003874 303 VLTVALVEGVNLASS-EM---TGLSDPYVVFTCNG-----KTRTSS-VQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDF 372 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~-d~---~g~sDPyV~v~l~~-----~~~kT~-v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~ 372 (790)
+|.|.|+.|.++++. +. ...+||||.+++-+ .+.+|+ +..++-||.|+|+|.|.+..+.-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 799999999966443 32 35689999999833 357899 567889999999999999888889999999999
Q ss_pred CCCCCCCCccccEEEeceecCCCCceeEEEEccccccCc-CCceeEEEEEEe
Q 003874 373 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFLE 423 (790)
Q Consensus 373 d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~-~~G~l~L~i~l~ 423 (790)
|. .++|||+|+..+|+..+..|-.+- +|.++.|.. ...+|.+++.+.
T Consensus 697 d~-~~~ddF~GQ~tlP~~~L~~GyRhV---pL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DY-IGKDDFIGQTTLPVSELRQGYRHV---PLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred CC-CCcccccceeeccHHHhhCceeee---eecCCCCccccceeEEEEEEEe
Confidence 99 789999999999999998887754 454433332 234666666543
No 117
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.67 E-value=9.5e-09 Score=115.89 Aligned_cols=97 Identities=25% Similarity=0.404 Sum_probs=85.0
Q ss_pred ccCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------EeeeecccCCCCCeEeeEEEEEeecCC----CCeE
Q 003874 297 AQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-------TRTSSVQLQTCDPQWHDILEFDAMEEP----PSVL 365 (790)
Q Consensus 297 ~~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~-------~~kT~v~~~tlnP~WnE~f~f~v~~~~----~~~L 365 (790)
+.+..-.|.|.|+.|+++.+.|.+|.|||||+|.+..+ .++|+|+.+|+||+|+|+|.|.+..++ ...+
T Consensus 942 y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~ 1021 (1103)
T KOG1328|consen 942 YNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAML 1021 (1103)
T ss_pred eeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceE
Confidence 34455589999999999999999999999999998643 569999999999999999999997654 3479
Q ss_pred EEEEEeeCCCCCCCCccccEEEeceecCC
Q 003874 366 DVEVFDFDGPFDQATSLGHAEINFLKHTS 394 (790)
Q Consensus 366 ~v~V~D~d~~~~~dd~LG~~~i~L~~l~~ 394 (790)
.++|+|+|- ++.+||-|++.+.|+.++.
T Consensus 1022 ~FTVMDHD~-L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1022 HFTVMDHDY-LRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EEEeeccce-ecccccchHHHHhhCCCCC
Confidence 999999999 8999999999999998753
No 118
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.61 E-value=1.3e-07 Score=84.46 Aligned_cols=82 Identities=17% Similarity=0.310 Sum_probs=69.1
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-EeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCC
Q 003874 304 LTVALVEGVNLASSE---MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 379 (790)
Q Consensus 304 L~V~vl~A~~L~~~d---~~g~sDPyV~v~l~~~-~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~d 379 (790)
|+|+|..++|+.-.+ ..+.+||||.+++++. +.||++. .||.|||+|.|.+ +....+.+.|||... +..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~V--dk~nEiel~VyDk~~--~~~ 73 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPV--EKNNEEEVIVYDKGG--DQP 73 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEe--cCCcEEEEEEEeCCC--Cee
Confidence 678999999998776 5778899999999876 7899884 7999999999998 457899999999876 556
Q ss_pred CccccEEEeceec
Q 003874 380 TSLGHAEINFLKH 392 (790)
Q Consensus 380 d~LG~~~i~L~~l 392 (790)
-.+|..-+.++.+
T Consensus 74 ~Pi~llW~~~sdi 86 (109)
T cd08689 74 VPVGLLWLRLSDI 86 (109)
T ss_pred cceeeehhhHHHH
Confidence 6778877777766
No 119
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.54 E-value=2.1e-07 Score=106.33 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=84.7
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CeEeeeecccCCCCCeEe-eEEEEEeecCCCCeEEEEEEeeC
Q 003874 301 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN------GKTRTSSVQLQTCDPQWH-DILEFDAMEEPPSVLDVEVFDFD 373 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~------~~~~kT~v~~~tlnP~Wn-E~f~f~v~~~~~~~L~v~V~D~d 373 (790)
...|.|.|+.|+.|+... .|...|||.+.+- +..++|.+..|++||+|| |.|+|.+..+.-.-|++.|+|.|
T Consensus 1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 468999999999999544 5667899999972 334566677899999999 99999998888899999999999
Q ss_pred CCCCCCCccccEEEeceecCCCCceeEEEEcccc
Q 003874 374 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 407 (790)
Q Consensus 374 ~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k 407 (790)
. ++...|||++..|+..+..|-. -+||.+.
T Consensus 1143 m-fs~~~FiaqA~yPv~~ik~GfR---sVpLkN~ 1172 (1267)
T KOG1264|consen 1143 M-FSDPNFLAQATYPVKAIKSGFR---SVPLKNG 1172 (1267)
T ss_pred c-cCCcceeeeeecchhhhhccce---eeecccC
Confidence 9 8988899999999999866543 3567653
No 120
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.54 E-value=2.9e-07 Score=110.04 Aligned_cols=92 Identities=20% Similarity=0.412 Sum_probs=81.9
Q ss_pred CceEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-EeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCC
Q 003874 300 DGWVLTVALVEGVNLASSE--MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPF 376 (790)
Q Consensus 300 ~~g~L~V~vl~A~~L~~~d--~~g~sDPyV~v~l~~~-~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~ 376 (790)
.-|+|.|+|.+|++|...+ ..+..|||+.+...+. ..||++.++++||+|||+|-..+ ..-.+.|.++|||++. +
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~l-ns~~d~L~LslyD~n~-~ 511 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILL-NSFTDPLNLSLYDFNS-F 511 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEe-cccCCceeEEEEeccc-c
Confidence 4689999999999999888 5899999999998543 45999999999999999998887 5667899999999888 7
Q ss_pred CCCCccccEEEeceecC
Q 003874 377 DQATSLGHAEINFLKHT 393 (790)
Q Consensus 377 ~~dd~LG~~~i~L~~l~ 393 (790)
.+|+.+|.+.++|..+.
T Consensus 512 ~sd~vvG~~~l~L~~L~ 528 (1227)
T COG5038 512 KSDKVVGSTQLDLALLH 528 (1227)
T ss_pred CCcceeeeEEechHHhh
Confidence 99999999999998874
No 121
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.33 E-value=5.8e-07 Score=102.21 Aligned_cols=118 Identities=15% Similarity=0.266 Sum_probs=89.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE----eeeecccCCCCCeEeeEEEEEeecC---------------CCC
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKT----RTSSVQLQTCDPQWHDILEFDAMEE---------------PPS 363 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~----~kT~v~~~tlnP~WnE~f~f~v~~~---------------~~~ 363 (790)
-+.+.++.++++.+.+ ++.+|||+++...+.. .+|++.++|.+|.|+|.|.|.+..+ ...
T Consensus 132 ~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l 210 (800)
T KOG2059|consen 132 GLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDML 210 (800)
T ss_pred cchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCcee
Confidence 3455666777776665 5569999999986443 4999999999999999999998655 345
Q ss_pred eEEEEEEe-eCCCCCCCCccccEEEeceecCCCCceeEEEEcccccc------CcCCceeEEEEEE
Q 003874 364 VLDVEVFD-FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLA------QSAQSKVHLRIFL 422 (790)
Q Consensus 364 ~L~v~V~D-~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~------~~~~G~l~L~i~l 422 (790)
.|++++|+ .+. ...++|+|++.+++...........||-|.++.. ...-|.+.+.+.+
T Consensus 211 ~irv~lW~~~~~-~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y 275 (800)
T KOG2059|consen 211 EIRVDLWNDLNL-VINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTY 275 (800)
T ss_pred eEEEeeccchhh-hhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEe
Confidence 79999999 565 5669999999999999876667789999986521 1223666776643
No 122
>PLN02352 phospholipase D epsilon
Probab=98.12 E-value=1.5e-05 Score=94.15 Aligned_cols=115 Identities=11% Similarity=0.182 Sum_probs=87.7
Q ss_pred CceEEEEEEEEeecCCCC----CCC-CCCCcEEEEEECCeE-eeeecccCCCCCeEeeEEEEEeecCCC-CeEEEEEEee
Q 003874 300 DGWVLTVALVEGVNLASS----EMT-GLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPP-SVLDVEVFDF 372 (790)
Q Consensus 300 ~~g~L~V~vl~A~~L~~~----d~~-g~sDPyV~v~l~~~~-~kT~v~~~tlnP~WnE~f~f~v~~~~~-~~L~v~V~D~ 372 (790)
-.|.|.++|.+|+-+... ... ...||||.+.+++.+ .|| .+..||+|+|+|.+.+ .... ..+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~-ah~~~~~~~f~vk~- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILC-AHPLDSTITITLKT- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEe-eeecCCcEEEEEec-
Confidence 468999999999843322 111 123999999997654 477 5566999999999998 4444 689999987
Q ss_pred CCCCCCCCccccEEEeceecCCCCc-eeEEEEccccccCcCCc-eeEEEEEEec
Q 003874 373 DGPFDQATSLGHAEINFLKHTSTEL-ADMWVSLEGKLAQSAQS-KVHLRIFLEN 424 (790)
Q Consensus 373 d~~~~~dd~LG~~~i~L~~l~~~~~-~~~w~~L~~k~~~~~~G-~l~L~i~l~~ 424 (790)
+ ..+||.+.||+.++..+.. .+.|+++.+.++....| +||+++.+..
T Consensus 83 -~----~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 131 (758)
T PLN02352 83 -K----CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRP 131 (758)
T ss_pred -C----CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEE
Confidence 2 4699999999999988755 89999998877666555 8899886654
No 123
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.10 E-value=1.7e-06 Score=101.65 Aligned_cols=91 Identities=25% Similarity=0.334 Sum_probs=82.4
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--eeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCC
Q 003874 300 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKT--RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD 377 (790)
Q Consensus 300 ~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~--~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~ 377 (790)
-...++|.+++|-+|.+.|.+|.+||||++.+|++. -+...+.+|+||+|.+.|++....+....+.++|||+|. ++
T Consensus 611 i~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~-~~ 689 (1105)
T KOG1326|consen 611 IKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDL-EA 689 (1105)
T ss_pred ceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeec-cc
Confidence 346889999999999999999999999999999876 477888999999999999998876777889999999999 89
Q ss_pred CCCccccEEEecee
Q 003874 378 QATSLGHAEINFLK 391 (790)
Q Consensus 378 ~dd~LG~~~i~L~~ 391 (790)
.|+.||++.++|+.
T Consensus 690 ~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 690 QDEKIGETTIDLEN 703 (1105)
T ss_pred ccchhhceehhhhh
Confidence 99999999999875
No 124
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.96 E-value=5e-06 Score=98.87 Aligned_cols=106 Identities=24% Similarity=0.305 Sum_probs=90.2
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeec---CCCCeEEEEEEe
Q 003874 300 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFD 371 (790)
Q Consensus 300 ~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~---~~~~~L~v~V~D 371 (790)
.+|+|+|-|.-|++|+-...+...||||+.++- ..++||+++++|.||.|||...+.-+. .....|.+.||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 478999999999999665556679999999983 347899999999999999998887322 234789999999
Q ss_pred eCCCCCCCCccccEEEeceecCCCCceeEEEEccc
Q 003874 372 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 406 (790)
Q Consensus 372 ~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~ 406 (790)
.+. +..+.++|.+.|+|.++...+....||.|..
T Consensus 1602 ~~~-~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1602 NGG-LLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred ccc-eeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 999 8899999999999999988877789999964
No 125
>PLN02964 phosphatidylserine decarboxylase
Probab=97.67 E-value=0.00012 Score=85.90 Aligned_cols=94 Identities=16% Similarity=0.280 Sum_probs=79.4
Q ss_pred cccCCceEEEEEEEEeecCCCCCCCCCCCcEE-EEEECCeEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCC
Q 003874 296 KAQGDGWVLTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDG 374 (790)
Q Consensus 296 ~~~~~~g~L~V~vl~A~~L~~~d~~g~sDPyV-~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~ 374 (790)
.+..-.|++.+++++|+ ++ ..|||. ++++|.+.+||.+.++|+||+||+...|.+........++.|||.+.
T Consensus 48 ~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 48 SAEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred ecccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 44557899999999997 33 258875 67789999999999999999999999999877777778999999999
Q ss_pred CCCCCCccccEEEeceecCCCCc
Q 003874 375 PFDQATSLGHAEINFLKHTSTEL 397 (790)
Q Consensus 375 ~~~~dd~LG~~~i~L~~l~~~~~ 397 (790)
++.++++|.++++|..+...+.
T Consensus 121 -~s~n~lv~~~e~~~t~f~~kqi 142 (644)
T PLN02964 121 -LSKNTLVGYCELDLFDFVTQEP 142 (644)
T ss_pred -CCHHHhhhheeecHhhccHHHH
Confidence 9999999999999887755444
No 126
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=7e-05 Score=79.12 Aligned_cols=100 Identities=22% Similarity=0.293 Sum_probs=78.4
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEEee
Q 003874 300 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 372 (790)
Q Consensus 300 ~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~D~ 372 (790)
....|.|+++++..|..+|.+|-+||||..++. .-+.+|.+.++++||.+++.|.+.+... ....+.|.|||.
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence 455789999999999999999999999999884 2356899999999999999999987332 235799999999
Q ss_pred CCCCCCCCccccEEEeceecCCCCceeEEE
Q 003874 373 DGPFDQATSLGHAEINFLKHTSTELADMWV 402 (790)
Q Consensus 373 d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~ 402 (790)
+. .+..+++|-....+.. .+..++.|+
T Consensus 311 ~~-G~s~d~~GG~~~g~~r--r~~v~~h~g 337 (362)
T KOG1013|consen 311 DI-GKSNDSIGGSMLGGYR--RGEVHKHWG 337 (362)
T ss_pred CC-CcCccCCCcccccccc--cchhhcCcc
Confidence 98 5688999976654433 333444443
No 127
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.31 E-value=0.00022 Score=77.22 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=100.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecCC-----------CCeEE
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEEP-----------PSVLD 366 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~~-----------~~~L~ 366 (790)
.|.+.|+++.+++.-....-.|-||++.+- .++.+|.+++.|.+|.|+|.|.+++...+ ...++
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 677888888877654323335788888762 45679999999999999999999985522 23689
Q ss_pred EEEEeeCCCCCCCCccccEEEeceecCCCCceeEEEEccccccCcCCceeEEEEEEecCCCcchhhhhh
Q 003874 367 VEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVETIKEYL 435 (790)
Q Consensus 367 v~V~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~~~G~l~L~i~l~~~~~~~~l~~~l 435 (790)
|++|.....+.+|.++|.+.+.|..+...-.....++|.. .....+|+|.++|.+...-+...+++..
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D-GRK~vGGkLevKvRiR~Pi~~~~~qhit 515 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD-GRKAVGGKLEVKVRIRQPIGDAKAQHIT 515 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcccchhhceeccc-cccccCCeeEEEEEEecccchhHHHHHH
Confidence 9999998845678899999999998876666667788854 2345789999999998877776665553
No 128
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=5.3e-05 Score=79.96 Aligned_cols=97 Identities=21% Similarity=0.348 Sum_probs=79.5
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeeecccCCCCCeEeeEEEEEeecC---CCCeEEEEEEe
Q 003874 300 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFD 371 (790)
Q Consensus 300 ~~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~-----~~~~kT~v~~~tlnP~WnE~f~f~v~~~---~~~~L~v~V~D 371 (790)
....+.++|..|++|.+++.++..|||++..+. -.+.+|++..+++||.|+|+-......+ ....+.+.|.|
T Consensus 91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcd 170 (362)
T KOG1013|consen 91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCD 170 (362)
T ss_pred hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeecc
Confidence 455788999999999999999999999999884 2357899999999999998776653222 23568888999
Q ss_pred eCCCCCCCCccccEEEeceecCCCCc
Q 003874 372 FDGPFDQATSLGHAEINFLKHTSTEL 397 (790)
Q Consensus 372 ~d~~~~~dd~LG~~~i~L~~l~~~~~ 397 (790)
.+. +.+.+++|+..+++..+...+.
T Consensus 171 n~~-~~~~~sqGq~r~~lkKl~p~q~ 195 (362)
T KOG1013|consen 171 NDK-KTHNESQGQSRVSLKKLKPLQR 195 (362)
T ss_pred Ccc-cccccCcccchhhhhccChhhc
Confidence 999 8999999999999988865444
No 129
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.00047 Score=74.15 Aligned_cols=107 Identities=22% Similarity=0.321 Sum_probs=87.2
Q ss_pred CceEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC--C---eEeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEe-e
Q 003874 300 DGWVLTVALVEGVNLASSEM-TGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFD-F 372 (790)
Q Consensus 300 ~~g~L~V~vl~A~~L~~~d~-~g~sDPyV~v~l~--~---~~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D-~ 372 (790)
..|.|.|.|++|++|..+.- ...++|||++++- + .+.+|+...+|+.|.+.....|+- .++...|.+.||- +
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~-sp~~k~Lq~tv~gdy 345 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ-SPPGKYLQGTVWGDY 345 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc-CCCccEEEEEEeccc
Confidence 45789999999999976653 4478999999983 2 256899999999998888888875 5667899999995 5
Q ss_pred CCCCCCCCccccEEEeceecCCCC-ceeEEEEccccc
Q 003874 373 DGPFDQATSLGHAEINFLKHTSTE-LADMWVSLEGKL 408 (790)
Q Consensus 373 d~~~~~dd~LG~~~i~L~~l~~~~-~~~~w~~L~~k~ 408 (790)
.+ ..++.|+|-+++.+.++.... ....||+|-+..
T Consensus 346 gR-md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 346 GR-MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred cc-cchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 55 678899999999999987766 677899998743
No 130
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.00075 Score=76.23 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=89.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEeeeecccCCCCCeEeeEEEEEeecCC---CCeEEEEEEe
Q 003874 302 WVLTVALVEGVNLASSEMTGLSDPYVVFTCN-------GKTRTSSVQLQTCDPQWHDILEFDAMEEP---PSVLDVEVFD 371 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~-------~~~~kT~v~~~tlnP~WnE~f~f~v~~~~---~~~L~v~V~D 371 (790)
..++|.|+.|.+|.=. ..|.--|||.+.+- .+++.|+...++-.|.+||+|.|-+-.+. .-.|.+.|-|
T Consensus 1125 hkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKD 1203 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKD 1203 (1283)
T ss_pred ceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehh
Confidence 3789999999999643 35677899999872 34668888889999999999999875442 3478899988
Q ss_pred eCCCCCCCCccccEEEeceecCCCCceeEEEEccccccCcCCceeEEEE
Q 003874 372 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRI 420 (790)
Q Consensus 372 ~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~~~G~l~L~i 420 (790)
+.- -..|..+|-+.++|..+...+.-..|+||..+-.....|-..|+|
T Consensus 1204 YCF-AReDRvvGl~VlqL~~va~kGS~a~W~pLgrrihmDeTGLtiLRI 1251 (1283)
T KOG1011|consen 1204 YCF-AREDRVVGLAVLQLRSVADKGSCACWVPLGRRIHMDETGLTILRI 1251 (1283)
T ss_pred hee-ecccceeeeeeeehhhHhhcCceeEeeeccccccccccchhHHHH
Confidence 875 466789999999999998888888999996543333344333333
No 131
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=97.13 E-value=0.00033 Score=80.10 Aligned_cols=100 Identities=20% Similarity=0.223 Sum_probs=76.8
Q ss_pred CCCCCccccccccCCCCcccccceeccccc---ccccCceEEEeccEEEEEeccCCCeEEEEEecccceeeEEccccccc
Q 003874 450 SPHRNSTFQKLFALPPEEFLIKDFTCYLKR---KMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLAT 526 (790)
Q Consensus 450 s~~k~~~f~~lF~lp~~E~l~~~f~C~l~~---~i~~~Grlyis~~~icF~s~~~g~~t~~~i~~~dI~~I~k~~~~~~~ 526 (790)
...+++.| .+|+|| |.+..+-.|.++. ....+||||++.+++||.|.... -+.+++|+..|..|++.+.+ +.
T Consensus 6 ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~s-s~ 80 (671)
T KOG4347|consen 6 ARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDS-SL 80 (671)
T ss_pred hhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCcc-cc
Confidence 34678899 899999 9999999999865 44578999999999999999875 48999999999999998831 11
Q ss_pred cCCCcEEEEEEecCCCCCCCCceeccCCCceEEEEeeccccchhhH
Q 003874 527 VGSPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVSFNDASR 572 (790)
Q Consensus 527 ~~~~~i~i~l~~~~gl~~~~~~~~~~~~~~~k~~F~sf~~rd~~~~ 572 (790)
+. ..+.+.+ .+...+.|+.+..|+..+-
T Consensus 81 ~~----------------~~i~~~~--~~~~~~~f~~~~~r~~~~~ 108 (671)
T KOG4347|consen 81 FT----------------QLISLFT--SNMVGMRFGGLTERLKLLS 108 (671)
T ss_pred ch----------------hhhHHhh--cCcceEEecchhhHHHHHH
Confidence 11 1111222 3456789999999998753
No 132
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.00 E-value=0.00019 Score=85.14 Aligned_cols=104 Identities=21% Similarity=0.272 Sum_probs=84.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEE---eecC------CCCeEEEEEEe
Q 003874 301 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFD---AMEE------PPSVLDVEVFD 371 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~---v~~~------~~~~L~v~V~D 371 (790)
...+++++.+|+.|.+.|..+.+|||+.+..-++...|.++.+|+||.|+++..|+ +..+ ....+.++|||
T Consensus 205 ~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd 284 (1105)
T KOG1326|consen 205 HSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYD 284 (1105)
T ss_pred hhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeeh
Confidence 34678888999999999999999999999999999999999999999999999885 2222 23568899999
Q ss_pred eCCCCCCCCccccEEEeceecCCCCceeEEEEccc
Q 003874 372 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 406 (790)
Q Consensus 372 ~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~ 406 (790)
.|+ .+.++++|+......-+.. .....|+++-.
T Consensus 285 ~dr-~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r 317 (1105)
T KOG1326|consen 285 LDR-SGINEFKGRKKQRPYVMVQ-CPALKWVPTMR 317 (1105)
T ss_pred hhh-hchHHhhcccccceEEEec-CCccceEEeec
Confidence 999 7999999998765544322 34457888754
No 133
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.90 E-value=0.0013 Score=74.58 Aligned_cols=85 Identities=19% Similarity=0.349 Sum_probs=68.9
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEEC------CeEeeeecccCCCCCeEeeEEEEEee----cCCCCeEEEEEEeeCCCCC
Q 003874 308 LVEGVNLASSEMTGLSDPYVVFTCN------GKTRTSSVQLQTCDPQWHDILEFDAM----EEPPSVLDVEVFDFDGPFD 377 (790)
Q Consensus 308 vl~A~~L~~~d~~g~sDPyV~v~l~------~~~~kT~v~~~tlnP~WnE~f~f~v~----~~~~~~L~v~V~D~d~~~~ 377 (790)
..+|++|..+|..+++|||..+.-. ...++|.++++++||.|.+ |..... .++...+.+.+||++. .+
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~-~~ 219 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDS-NG 219 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCC-CC
Confidence 4568999999999999999987652 2356999999999999986 443321 2456789999999998 68
Q ss_pred CCCccccEEEeceecCC
Q 003874 378 QATSLGHAEINFLKHTS 394 (790)
Q Consensus 378 ~dd~LG~~~i~L~~l~~ 394 (790)
++++||++..++..+..
T Consensus 220 ~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 220 KHDLIGKFQTTLSELQE 236 (529)
T ss_pred CcCceeEecccHHHhcc
Confidence 88999999999988864
No 134
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=96.63 E-value=0.0031 Score=58.52 Aligned_cols=82 Identities=15% Similarity=0.239 Sum_probs=62.1
Q ss_pred CCcEEEEEE----CCeEeeeecccCCCCCeEeeEEEEEee----cC-----------CCCeEEEEEEeeCCCC-------
Q 003874 323 SDPYVVFTC----NGKTRTSSVQLQTCDPQWHDILEFDAM----EE-----------PPSVLDVEVFDFDGPF------- 376 (790)
Q Consensus 323 sDPyV~v~l----~~~~~kT~v~~~tlnP~WnE~f~f~v~----~~-----------~~~~L~v~V~D~d~~~------- 376 (790)
-++||.+.+ ++..++|+++.++-.|.|+..++|.+. .+ ....+.++||+...+.
T Consensus 33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~ 112 (143)
T cd08683 33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKI 112 (143)
T ss_pred cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceecc
Confidence 589999986 356789999999999999999999764 11 1347899999976411
Q ss_pred --CCCCccccEEEeceecC-CCCceeEEEEc
Q 003874 377 --DQATSLGHAEINFLKHT-STELADMWVSL 404 (790)
Q Consensus 377 --~~dd~LG~~~i~L~~l~-~~~~~~~w~~L 404 (790)
..|-+||.+.||+.++. .......||++
T Consensus 113 ~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 113 ETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 23457899999999874 34456789875
No 135
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.53 E-value=0.0068 Score=69.01 Aligned_cols=160 Identities=15% Similarity=0.126 Sum_probs=101.8
Q ss_pred eeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCC---CCCCCccccEEEeceecCCCCceeEEEEccccccCcC
Q 003874 336 RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP---FDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSA 412 (790)
Q Consensus 336 ~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~---~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~~ 412 (790)
.+|.++.+.+||.|-+.|.+....+..+.|+++++|.+.+ +..++|+|++...+..+........-+.++. +....
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~-~~~~~ 121 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP-GKNAG 121 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc-CccCC
Confidence 4899999999999999999998889999999999998752 3467899999999998754333222222222 13345
Q ss_pred CceeEEEEE-EecCCCcchhhhhhhhhhhhhcccccccCCCCCcccccccc---------CCCCcccccceeccccc-cc
Q 003874 413 QSKVHLRIF-LENNNGVETIKEYLTKMEKEVGKKLNLRSPHRNSTFQKLFA---------LPPEEFLIKDFTCYLKR-KM 481 (790)
Q Consensus 413 ~G~l~L~i~-l~~~~~~~~l~~~l~kleke~g~k~~~~s~~k~~~f~~lF~---------lp~~E~l~~~f~C~l~~-~i 481 (790)
.|.|.+.+. .+.............+++++. -..++++|...++ +...|.+.+..+..|.. .+
T Consensus 122 ~g~iti~aee~~~~~~~~~~~~~~~~ld~kd-------~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i 194 (529)
T KOG1327|consen 122 SGTITISAEEDESDNDVVQFSFRAKNLDPKD-------FFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSI 194 (529)
T ss_pred cccEEEEeecccccCceeeeeeeeeecCccc-------ccccCCcceEEEEecCCCceeeccccceeccCCCCccccccc
Confidence 677777773 222222211111112222221 1256777777664 23448888888888865 44
Q ss_pred ccC----ceEEEeccEEEEEeccCCC
Q 003874 482 PLQ----GRLFLSARIVGFYANLFGN 503 (790)
Q Consensus 482 ~~~----Grlyis~~~icF~s~~~g~ 503 (790)
+.+ +..-.+.-..|++.+..|.
T Consensus 195 ~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 195 SLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred chhhhcccCCCCceEEEEeccCCCCC
Confidence 433 2333455678888877664
No 136
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.49 E-value=0.16 Score=55.71 Aligned_cols=121 Identities=16% Similarity=0.284 Sum_probs=91.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEeeEEEEEeec-------CCCCeEEEEEEeeCCCC
Q 003874 304 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAME-------EPPSVLDVEVFDFDGPF 376 (790)
Q Consensus 304 L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~WnE~f~f~v~~-------~~~~~L~v~V~D~d~~~ 376 (790)
+.|.|++|+|.+... .-.-.+..++++....|..+..+..|.||....+++.. ....+|++++|..|..-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 568899999998763 23455667889999999999999999999988887532 24568999999998314
Q ss_pred CCCCccccEEEeceec---CCC--CceeEEEEcccc--ccCcCCceeEEEEEEecCCC
Q 003874 377 DQATSLGHAEINFLKH---TST--ELADMWVSLEGK--LAQSAQSKVHLRIFLENNNG 427 (790)
Q Consensus 377 ~~dd~LG~~~i~L~~l---~~~--~~~~~w~~L~~k--~~~~~~G~l~L~i~l~~~~~ 427 (790)
+..+.+|.+.++|... ..+ .....||+|.+- ......-+|.|.+.+.....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 6778999999999987 444 456789999875 33334566777776665443
No 137
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.42 E-value=1.1 Score=43.92 Aligned_cols=147 Identities=12% Similarity=0.118 Sum_probs=97.4
Q ss_pred ccccCCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEecc---c--ccCC-Cce--eceEEEEe
Q 003874 623 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNR---H--VSIF-GGE--VTCTQQKS 694 (790)
Q Consensus 623 ~~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~---~--i~~~-~~~--vt~~Q~~~ 694 (790)
+.++|++++.++.+|.|..|++..++..|..+..+..-..+..+ ....+.-.+.. | +..+ +.. ++.+++.
T Consensus 4 ~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~w- 81 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDG-VRVTVRQTVPADKLPSAARKFVGGDLRVTRTETW- 81 (159)
T ss_pred EEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCe-EEEEEEEecChhhCCHHHHHhcCCCeEEEEEEEE-
Confidence 45789999999999999999999999999867777766655444 33333333211 1 1111 222 3333333
Q ss_pred ecCCCCcEEEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHH
Q 003874 695 PLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIE 774 (790)
Q Consensus 695 ~~~~~~~~vv~~~~t~~dVPygd~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~g~~~~~k~~~~ 774 (790)
.-.++..+-.+-..+++ |.-..+...+.++..+ .+|++.+...|+=. =+.+-++||+.+.+.+.+.+..--+
T Consensus 82 ~~~~~g~~~g~~~~~~~----G~P~~~~G~~~L~~~~---~gt~~~~~g~v~v~-VPlvGgkiE~~v~~~~~~~~~~e~~ 153 (159)
T PF10698_consen 82 TPLDDGRRTGTFTVSIP----GAPVSISGTMRLRPDG---GGTRLTVEGEVKVK-VPLVGGKIEKAVAENLRKLLEAEQE 153 (159)
T ss_pred ecCCCCeEEEEEEEEec----CceEEEEEEEEEecCC---CCEEEEEEEEEEEE-EccccHHHHHHHHHHHHHHHHHHHH
Confidence 33345556555444435 4556788888888754 78888888777543 4678999999999988888887777
Q ss_pred HHHHH
Q 003874 775 LVERE 779 (790)
Q Consensus 775 ~~~k~ 779 (790)
++.+.
T Consensus 154 ~~~~w 158 (159)
T PF10698_consen 154 FTAEW 158 (159)
T ss_pred HHHhh
Confidence 66654
No 138
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.22 E-value=0.2 Score=48.73 Aligned_cols=124 Identities=15% Similarity=0.186 Sum_probs=85.3
Q ss_pred ceEEEEEEEEeecCCCCCC--CCCCCcEEEEE--ECCeEeeeecccCCCCCeEeeEEEEEeecCC-------------CC
Q 003874 301 GWVLTVALVEGVNLASSEM--TGLSDPYVVFT--CNGKTRTSSVQLQTCDPQWHDILEFDAMEEP-------------PS 363 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~~~d~--~g~sDPyV~v~--l~~~~~kT~v~~~tlnP~WnE~f~f~v~~~~-------------~~ 363 (790)
.-.|++.|+.|+-....-. .+..+.-+.+. +++|.++|+.+..+.+|.++|.|-|++..+. .+
T Consensus 8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~ 87 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISD 87 (156)
T ss_pred ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence 3468899988874432111 13444444444 4799999999999999999999999986543 35
Q ss_pred eEEEEEEeeCCCCCCCCccccEEEeceecCCCCceeEEEE--cccccc--CcCCceeEEEEEEecC
Q 003874 364 VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVS--LEGKLA--QSAQSKVHLRIFLENN 425 (790)
Q Consensus 364 ~L~v~V~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~--L~~k~~--~~~~G~l~L~i~l~~~ 425 (790)
.+++.|.-.|. .+...++|.-.++-..+...+....+++ |.+... ....|-|.++++|-+.
T Consensus 88 pihivli~~d~-~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 88 PIHIVLIRTDP-SGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred ceEEEEEEecC-CCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 78888888787 5566788988888887765555433333 444332 2357889999977554
No 139
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.22 E-value=0.024 Score=66.94 Aligned_cols=111 Identities=16% Similarity=0.218 Sum_probs=80.3
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEeeeeccc-CCCCCeEee-EEEEE-eecCCCCeEEEEEE
Q 003874 301 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-------GKTRTSSVQL-QTCDPQWHD-ILEFD-AMEEPPSVLDVEVF 370 (790)
Q Consensus 301 ~g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~-------~~~~kT~v~~-~tlnP~WnE-~f~f~-v~~~~~~~L~v~V~ 370 (790)
.+.+.|+||+|.-|..++ ...||.|.+- .+.++|++.. ++.||+|+| .|.|. +.-+.-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 468999999999998776 4589999872 2456888874 689999995 58885 44456689999999
Q ss_pred eeCCCCCCCCccccEEEeceecCCCCceeEEEEccccccCcC-CceeEEEEEEe
Q 003874 371 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSA-QSKVHLRIFLE 423 (790)
Q Consensus 371 D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~~-~G~l~L~i~l~ 423 (790)
+.++ .+||+-.+|+..+..|-.+ +.|.+...+.. -..|.+.+.+.
T Consensus 778 eEgg-----K~ig~RIlpvd~l~~GYrh---v~LRse~Nqpl~lp~Lfv~i~~k 823 (1189)
T KOG1265|consen 778 EEGG-----KFIGQRILPVDGLNAGYRH---VCLRSESNQPLTLPALFVYIVLK 823 (1189)
T ss_pred ccCC-----ceeeeeccchhcccCccee---EEecCCCCCccccceeEEEEEee
Confidence 9886 5999999999998776543 45554433321 23455555443
No 140
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.10 E-value=0.68 Score=45.40 Aligned_cols=147 Identities=14% Similarity=0.189 Sum_probs=106.5
Q ss_pred eeEEecCcccccccccCCCchhHHHHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecC-------CCc-eeeEEEEE
Q 003874 22 DQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAAT-------KLV-KAVKATEQ 93 (790)
Q Consensus 22 ~~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~-------~~~-k~~~~~e~ 93 (790)
...|++|+++++.++.. -.||++.++..+..+.....-..+.+ ..+.++.-.++.. +.+ .....+++
T Consensus 4 ~~~~~~~~~~v~~~~~d--~~y~~~r~~~~g~~~~~~~~~~~~~~---g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~ 78 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTD--EDYWEARCAALGADNAEVESFEVDGD---GVRVTVRQTVPADKLPSAARKFVGGDLRVTRT 78 (159)
T ss_pred EEEcCCCHHHHHHHHcC--HHHHHHHHHHcCCCCceEEEEEEcCC---eEEEEEEEecChhhCCHHHHHhcCCCeEEEEE
Confidence 46899999999999995 58999999988885555555433322 2444444445532 222 45777888
Q ss_pred EEEEeeCCceEEEEEeeeCCCCCCCCeeEEEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeeeeeeccccccHHHH
Q 003874 94 QTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKES 173 (790)
Q Consensus 94 q~~~~~~~~~~~v~~~~~tpdVP~g~~F~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K~~Ie~~~~~G~~~~ 173 (790)
++....++..+....++..+++ -..+.-.+.|+| ....|++.+...|+-. =.+|-|.||+-+-.-+...
T Consensus 79 e~w~~~~~g~~~g~~~~~~~G~----P~~~~G~~~L~~------~~~gt~~~~~g~v~v~-VPlvGgkiE~~v~~~~~~~ 147 (159)
T PF10698_consen 79 ETWTPLDDGRRTGTFTVSIPGA----PVSISGTMRLRP------DGGGTRLTVEGEVKVK-VPLVGGKIEKAVAENLRKL 147 (159)
T ss_pred EEEecCCCCeEEEEEEEEecCc----eEEEEEEEEEec------CCCCEEEEEEEEEEEE-EccccHHHHHHHHHHHHHH
Confidence 8885556788888888777754 478899999993 5678999888887422 2589999999999888888
Q ss_pred HHHHHHHHHhh
Q 003874 174 FEQFANLLAQN 184 (790)
Q Consensus 174 ~~~~~~~l~~~ 184 (790)
++.-.+...+.
T Consensus 148 ~~~e~~~~~~w 158 (159)
T PF10698_consen 148 LEAEQEFTAEW 158 (159)
T ss_pred HHHHHHHHHhh
Confidence 88777766654
No 141
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=93.66 E-value=0.054 Score=47.04 Aligned_cols=95 Identities=13% Similarity=0.211 Sum_probs=65.1
Q ss_pred EEEEEEeecCCCCCCCC-CCCcEEE--EEECC-eEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEEeeCCCCCC
Q 003874 305 TVALVEGVNLASSEMTG-LSDPYVV--FTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGPFDQ 378 (790)
Q Consensus 305 ~V~vl~A~~L~~~d~~g-~sDPyV~--v~l~~-~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~D~d~~~~~ 378 (790)
-|+++.+++|.-....| ...-|++ +++.. ...||++.....||.|.|+|.|.+... +.-.|.+.|+. .. .+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~--~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QT--PR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cC--Cc
Confidence 47888999985433333 2233443 34443 356999999999999999999986332 34578889988 33 46
Q ss_pred CCccccEEEeceecCCCCceeEEEE
Q 003874 379 ATSLGHAEINFLKHTSTELADMWVS 403 (790)
Q Consensus 379 dd~LG~~~i~L~~l~~~~~~~~w~~ 403 (790)
.+-||++.+.++.+-. +..++|..
T Consensus 79 Ke~iG~~sL~l~s~ge-eE~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRTLST-QETDHWLE 102 (103)
T ss_pred cceeeEEEeecccCCH-HHhhhhhc
Confidence 6899999999988633 33456653
No 142
>PF14470 bPH_3: Bacterial PH domain
Probab=93.40 E-value=0.8 Score=40.36 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=48.0
Q ss_pred CCCCcccccceecccccc-cccCceEEEeccEEEEEecc-CCCeEEEEEecccceeeEEccc
Q 003874 463 LPPEEFLIKDFTCYLKRK-MPLQGRLFLSARIVGFYANL-FGNKTKFFFLWEDIEDIQILSP 522 (790)
Q Consensus 463 lp~~E~l~~~f~C~l~~~-i~~~Grlyis~~~icF~s~~-~g~~t~~~i~~~dI~~I~k~~~ 522 (790)
|.++|.+.....|.+... ....|-+.+|...+.|+..- ++......|||++|.+|+...+
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g 62 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKG 62 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEcc
Confidence 457889988888887632 23459999999999998765 6667788999999999998763
No 143
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=92.85 E-value=0.58 Score=45.92 Aligned_cols=100 Identities=16% Similarity=0.314 Sum_probs=66.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEe----eeecccCCCCCeEeeEEEEEeec---CCCCeEEEEEEeeC
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR----TSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFD 373 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l--~~~~~----kT~v~~~tlnP~WnE~f~f~v~~---~~~~~L~v~V~D~d 373 (790)
.++|+|+.+.++...+ .+|-||.+.+ |++.. .|+.+.. .++.|||...|++.- +....|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 5889999999987643 4688888765 44422 3443333 679999999997642 23568999999976
Q ss_pred CCCC----CCCccccEEEeceecCCCCceeEEEEccccccCcCCceeEEEEEE
Q 003874 374 GPFD----QATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 422 (790)
Q Consensus 374 ~~~~----~dd~LG~~~i~L~~l~~~~~~~~w~~L~~k~~~~~~G~l~L~i~l 422 (790)
. -. ....+|.+.++|=.... .=.+|...|.+|-
T Consensus 85 ~-~~~~k~~~~~iG~~ni~LFd~~~---------------~Lr~G~~~L~lW~ 121 (158)
T cd08398 85 G-RKGAKEEHCPLAWGNINLFDYTD---------------TLVSGKMALNLWP 121 (158)
T ss_pred c-ccCCCCceEEEEEEEEEEECCCC---------------hhhCCCEEEEEEc
Confidence 4 11 12358888777654211 1236778888874
No 144
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=92.22 E-value=0.77 Score=45.79 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=48.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----eeeecccCCCCCeEeeEEEEEeec---CCCCeEEEEEEeeC
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKT----RTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFD 373 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l--~~~~----~kT~v~~~tlnP~WnE~f~f~v~~---~~~~~L~v~V~D~d 373 (790)
.++|+|+.+.+|... ....+-||.+.+ |++. ..|+...-+.++.|||.+.|++.- +....|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 689999999999862 233566776544 5543 355555545679999999997632 23568999999975
Q ss_pred C
Q 003874 374 G 374 (790)
Q Consensus 374 ~ 374 (790)
.
T Consensus 87 ~ 87 (173)
T cd08693 87 K 87 (173)
T ss_pred c
Confidence 4
No 145
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=91.98 E-value=4.3 Score=38.62 Aligned_cols=118 Identities=22% Similarity=0.346 Sum_probs=77.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE---eeeecc-cCCCCCeEeeEEEEEeec---C-----CCCeEEEEE
Q 003874 302 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKT---RTSSVQ-LQTCDPQWHDILEFDAME---E-----PPSVLDVEV 369 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~---~kT~v~-~~tlnP~WnE~f~f~v~~---~-----~~~~L~v~V 369 (790)
-.+.|.+.+..+++.. ...-||++..+... .+|+.. ..+-.-.|||.|.+.+.- . ....+.|.|
T Consensus 7 f~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 4678888999888862 24456666665443 344433 345568999999887542 1 234688999
Q ss_pred EeeCCCCCCCCccccEEEeceecCCC--CceeEEEEccccccCcCCceeEEEEEEecCC
Q 003874 370 FDFDGPFDQATSLGHAEINFLKHTST--ELADMWVSLEGKLAQSAQSKVHLRIFLENNN 426 (790)
Q Consensus 370 ~D~d~~~~~dd~LG~~~i~L~~l~~~--~~~~~w~~L~~k~~~~~~G~l~L~i~l~~~~ 426 (790)
+.... -++...+|.+.|+|.+.... .....-++|... ......|++.+.+....
T Consensus 83 ~~~~~-~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 83 FEVDG-SGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--KKSNATLSISISLSELR 138 (143)
T ss_pred EEecC-CCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--CCCCcEEEEEEEEEECc
Confidence 88743 23335899999999998653 455567777664 24567788888665433
No 146
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=90.19 E-value=1.4 Score=43.07 Aligned_cols=87 Identities=14% Similarity=0.248 Sum_probs=57.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----eeeecccCCCCCeEeeEEEEEeec---CCCCeEEEEEEeeC
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKT----RTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFD 373 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l--~~~~----~kT~v~~~tlnP~WnE~f~f~v~~---~~~~~L~v~V~D~d 373 (790)
.++|.+....++...+ ....+-||.+.+ |++. ..|.......++.|||...|++.- +....|.|+||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4677788877776521 223566666654 4432 244444434689999999997532 23568999999987
Q ss_pred CCCC--CCCccccEEEecee
Q 003874 374 GPFD--QATSLGHAEINFLK 391 (790)
Q Consensus 374 ~~~~--~dd~LG~~~i~L~~ 391 (790)
. .+ .+..||.+.++|=.
T Consensus 88 ~-~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 88 E-PGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred c-CCCCcceEEEEEeEEeEc
Confidence 6 23 45789999888765
No 147
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=90.07 E-value=16 Score=34.01 Aligned_cols=137 Identities=11% Similarity=0.071 Sum_probs=76.2
Q ss_pred cccCCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEecccccCCCceeceEEEEeecCCCCcEE
Q 003874 624 AELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWI 703 (790)
Q Consensus 624 ~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~~i~~~~~~vt~~Q~~~~~~~~~~~v 703 (790)
.+++++++.+|+++.|-+-+.+++-... ++. +. +.+...=.+.+. +++.+...+..=......+...++
T Consensus 7 ~~i~a~~e~v~~~l~D~~~~~~w~p~~~--~~~---~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd05018 7 FRIPAPPEEVWAALNDPEVLARCIPGCE--SLE---KI--GPNEYEATVKLK----VGPVKGTFKGKVELSDLDPPESYT 75 (144)
T ss_pred EEecCCHHHHHHHhcCHHHHHhhccchh--hcc---cc--CCCeEEEEEEEE----EccEEEEEEEEEEEEecCCCcEEE
Confidence 4679999999999998887777664322 221 11 112111112222 233322222111122223334454
Q ss_pred EEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHHHHH
Q 003874 704 VNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREI 780 (790)
Q Consensus 704 v~~~~t~~dVPygd~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~g~~~~~k~~~~~~~k~v 780 (790)
+.-.. .+.+.......+|.++..+ ++|+|.....++... .++.+...-+....++....+++.+++.+
T Consensus 76 ~~~~~----~~~~~~~~~~~~~~l~~~~---~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 76 ITGEG----KGGAGFVKGTARVTLEPDG---GGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEEE----cCCCceEEEEEEEEEEecC---CcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44322 2225567899999999864 679999998888654 34555555555555566666666666554
No 148
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=90.04 E-value=0.94 Score=44.53 Aligned_cols=89 Identities=18% Similarity=0.338 Sum_probs=59.1
Q ss_pred CCCcEEEEEE--CCeE----eeeecccCCCCCeEeeEEEEEeec---CCCCeEEEEEEeeCCCCCCCCccccEEEeceec
Q 003874 322 LSDPYVVFTC--NGKT----RTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFDGPFDQATSLGHAEINFLKH 392 (790)
Q Consensus 322 ~sDPyV~v~l--~~~~----~kT~v~~~tlnP~WnE~f~f~v~~---~~~~~L~v~V~D~d~~~~~dd~LG~~~i~L~~l 392 (790)
.+|-||.+.+ +++. ..|+.+.-+..+.|||...|.+.- +....|.|+|||.+. .++...+|.+.++|=..
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~-~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG-TGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC-CCCceEEEEEEEeeECC
Confidence 4677776655 4332 255555545678999999998643 235689999999886 35667899998887553
Q ss_pred CCCCceeEEEEccccccCcCCceeEEEEEEecCC
Q 003874 393 TSTELADMWVSLEGKLAQSAQSKVHLRIFLENNN 426 (790)
Q Consensus 393 ~~~~~~~~w~~L~~k~~~~~~G~l~L~i~l~~~~ 426 (790)
. + .=.+|...|.+|.....
T Consensus 108 ~-g--------------~Lr~G~~~l~lw~~~~~ 126 (159)
T cd08397 108 D-G--------------TLRRGRQKLRVWPDVEA 126 (159)
T ss_pred C-C--------------cEecCCEEEEEEeCCCC
Confidence 1 1 12357788888755443
No 149
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=88.55 E-value=4.9 Score=35.50 Aligned_cols=83 Identities=11% Similarity=0.164 Sum_probs=56.7
Q ss_pred CCcEEEEEECCeE-eeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCccccEEEeceecCCCCceeEE
Q 003874 323 SDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMW 401 (790)
Q Consensus 323 sDPyV~v~l~~~~-~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~w 401 (790)
++-.+++.+.+.. ..|.-. ...+..|++.|.+++ +....|+|.||-.|- ..+.|-..+.|.+. .+..-
T Consensus 9 ~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~L--dRsRELEI~VywrD~----RslCav~~lrLEd~----~~~~~ 77 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLEL--ERSRELEIAVYWRDW----RSLCAVKFLKLEDE----RHEVQ 77 (98)
T ss_pred cceEEEEEEcCeEEeecccc-ccccccccceeEEEe--ecccEEEEEEEEecc----hhhhhheeeEhhhh----cccce
Confidence 6777888887643 355443 335889999999986 567899999998875 24667777777763 23344
Q ss_pred EEccccccCcCCceeEEEEEE
Q 003874 402 VSLEGKLAQSAQSKVHLRIFL 422 (790)
Q Consensus 402 ~~L~~k~~~~~~G~l~L~i~l 422 (790)
++|++ +|.+...+.+
T Consensus 78 ~~lep------qg~l~~ev~f 92 (98)
T cd08687 78 LDMEP------QLCLVAELTF 92 (98)
T ss_pred ecccc------ccEEEEEEEe
Confidence 55554 6767666654
No 150
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=88.09 E-value=1.5 Score=43.65 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=60.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEe----eeeccc----CCCCCeEeeEEEEEeec---CCCCeEEEE
Q 003874 302 WVLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR----TSSVQL----QTCDPQWHDILEFDAME---EPPSVLDVE 368 (790)
Q Consensus 302 g~L~V~vl~A~~L~~~d~~g~sDPyV~v~l--~~~~~----kT~v~~----~tlnP~WnE~f~f~v~~---~~~~~L~v~ 368 (790)
..+.|+|..+.+++........|-||.+.+ |++.. .|+... -...+.|||.+.|.+.- +....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 468899999999987664456788888765 54432 343221 12357899999998632 234689999
Q ss_pred EEeeCCCCC---------CCCccccEEEecee
Q 003874 369 VFDFDGPFD---------QATSLGHAEINFLK 391 (790)
Q Consensus 369 V~D~d~~~~---------~dd~LG~~~i~L~~ 391 (790)
+|+... .+ .+..||.+.++|=+
T Consensus 88 l~~~~~-~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 88 LYGTTS-SPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEec-CCccccccccccceEEEEEeEeeEc
Confidence 999765 23 34577877777654
No 151
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=87.09 E-value=5.6 Score=40.67 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=83.9
Q ss_pred EeeEEecCcccccccccCCCchhH-HHHHHHhCccceeeCcCcccCCCCceeEEEEEEEee-c--CCCceeeEEEEEEEE
Q 003874 21 LDQLYQVSPCDLNTFLFAPDSQFR-KDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKA-A--TKLVKAVKATEQQTY 96 (790)
Q Consensus 21 ~~~~~~~~~~~l~~llf~~~s~f~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~-~--~~~~k~~~~~e~q~~ 96 (790)
+-.+++++++++|..||. +.+.. +|........-+...+ ++ ++ +.|.+. + ..+++.=-..-.+..
T Consensus 52 ~~~~i~~~~~~v~~~l~~-d~~~~~~Wd~~~~~~~~i~~~d-----~~----~~-i~y~~~~~~~~~~vs~RDfV~~r~~ 120 (208)
T cd08868 52 LTGVLDCPAEFLYNELVL-NVESLPSWNPTVLECKIIQVID-----DN----TD-ISYQVAAEAGGGLVSPRDFVSLRHW 120 (208)
T ss_pred EEEEEcCCHHHHHHHHHc-CccccceecCcccceEEEEEec-----CC----cE-EEEEEecCcCCCcccccceEEEEEE
Confidence 356888999999987774 43332 3332223332222211 12 33 334433 2 245544333334444
Q ss_pred EeeCCceEEE-EEeeeCCCCCCCCeeE----EEEEEEEecCCCCCCCCCccEEEEEEEEEEeee--eeeeeeeecccccc
Q 003874 97 LKANGQEFAI-LVTVSTPDVPYGNTFN----VQLLYKIIPGPELSSGEDSSHLIISWGIDFHQS--TMMRGMIEGGARQG 169 (790)
Q Consensus 97 ~~~~~~~~~v-~~~~~tpdVP~g~~F~----v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~--~~~K~~Ie~~~~~G 169 (790)
.+.+ +.|+| ..++.-|.+|-..-|. ....|.|+|-|+ +.++|++..-..++..|+ .|+ +.+.+..+
T Consensus 121 ~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~---~~~~t~v~~~~~~Dp~G~iP~~l---vN~~~~~~ 193 (208)
T cd08868 121 GIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPN---NPNKCNFTWLLNTDLKGWLPQYL---VDQALASV 193 (208)
T ss_pred EecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCC---CCCceEEEEEEEECCCCCCccee---eehhhHHH
Confidence 4444 55554 4555557777555433 447899995432 447899998888888887 465 66667778
Q ss_pred HHHHHHHHHHHHHh
Q 003874 170 LKESFEQFANLLAQ 183 (790)
Q Consensus 170 ~~~~~~~~~~~l~~ 183 (790)
+-+++..|.+.+.+
T Consensus 194 ~~~~~~~Lr~~~~~ 207 (208)
T cd08868 194 LLDFMKHLRKRIAT 207 (208)
T ss_pred HHHHHHHHHHHHhh
Confidence 87777777766654
No 152
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=86.79 E-value=1.6 Score=46.56 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=55.9
Q ss_pred CCceEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-EeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCC
Q 003874 299 GDGWVLTVALVEGVNLASSE--MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDG 374 (790)
Q Consensus 299 ~~~g~L~V~vl~A~~L~~~d--~~g~sDPyV~v~l~~~-~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~ 374 (790)
+-.|+|.++++++++|.-.. .+-+-+-||++.+..+ +-+|.+.....--.|.|.|..++. ....+.+-||.|+.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv--~~~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVV--NIEVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecc--cceeeeEEEeecCc
Confidence 35789999999999996433 2445789999998754 446766666667788999998863 35678888999886
No 153
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=86.63 E-value=25 Score=35.18 Aligned_cols=143 Identities=8% Similarity=0.001 Sum_probs=76.5
Q ss_pred cccCCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEe-cccccCCCceeceEEEEeecCCCCcE
Q 003874 624 AELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF-NRHVSIFGGEVTCTQQKSPLASGEGW 702 (790)
Q Consensus 624 ~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~-n~~i~~~~~~vt~~Q~~~~~~~~~~~ 702 (790)
.+++++++.+++++.|-+...++.... .+..+-+ ....+ ..+.|.. ..|.....-..+.........++..+
T Consensus 47 ~~i~~s~e~v~~vi~d~e~~~~w~~~~--~~~~vie--~~~~~---~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~ 119 (195)
T cd08876 47 AEVDASIEAFLALLRDTESYPQWMPNC--KESRVLK--RTDDN---ERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGSV 119 (195)
T ss_pred EEEeCCHHHHHHHHhhhHhHHHHHhhc--ceEEEee--cCCCC---cEEEEEEEecccccCCceEEEEEEEEEcCCCCEE
Confidence 467999999999887877777777643 3333222 11111 2333332 22211111223222222222223445
Q ss_pred EEEEEEecCCCCCCC----ceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHHH
Q 003874 703 IVNEVMSLHDVPFDD----HFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVER 778 (790)
Q Consensus 703 vv~~~~t~~dVPygd----~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~g~~~~~k~~~~~~~k 778 (790)
++......+++|-.. .+.....|.|++.+ +++|+|.....+++. +.+-+.+|...+.. ....+++.+++
T Consensus 120 ~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~--~~~t~vt~~~~~dp~-g~iP~~lv~~~~~~----~~~~~l~~l~~ 192 (195)
T cd08876 120 TITLEAAPEALPEQKGYVRIKTVEGQWTFTPLG--NGKTRVTYQAYADPG-GSIPGWLANAFAKD----APYNTLENLRK 192 (195)
T ss_pred EEEeecCCccCCCCCCeEEceeceeeEEEEECC--CCeEEEEEEEEeCCC-CCCCHHHHHHHHHH----HHHHHHHHHHH
Confidence 555333323356432 35667789999987 689999999999985 44555555555443 33344444444
Q ss_pred HH
Q 003874 779 EI 780 (790)
Q Consensus 779 ~v 780 (790)
++
T Consensus 193 ~~ 194 (195)
T cd08876 193 QL 194 (195)
T ss_pred hh
Confidence 43
No 154
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=83.94 E-value=11 Score=37.73 Aligned_cols=71 Identities=15% Similarity=0.128 Sum_probs=43.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE---eeeecccCCCCCeEeeEEEEEeec---CCCCeEEEEEEeeCC
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKT---RTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFDG 374 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l--~~~~---~kT~v~~~tlnP~WnE~f~f~v~~---~~~~~L~v~V~D~d~ 374 (790)
.++|+|..+.++. .+......-||.+.+ |++. .+|....-+.+|.|||.+.|++.- +....|.|+||+...
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 5778888776432 221222234454433 4432 256666556789999999998643 235689999999753
No 155
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=82.74 E-value=37 Score=31.51 Aligned_cols=137 Identities=8% Similarity=0.025 Sum_probs=74.4
Q ss_pred eeEEecCcccccccccCCCchhHHHHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecCCCceeeEEEEEEEEEeeC-
Q 003874 22 DQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKAN- 100 (790)
Q Consensus 22 ~~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~~~k~~~~~e~q~~~~~~- 100 (790)
...+++|++++|++|=.+ ..+-+++...+.+.-+ +++ . ..+.....+ .+.+. ..+.+=.+...+
T Consensus 6 ~~~i~a~~e~v~~~l~D~-~~~~~w~p~~~~~~~~--------~~~--~--~~~~~~~~~-~~~~~-~~~~~~~~~~~~~ 70 (144)
T cd05018 6 EFRIPAPPEEVWAALNDP-EVLARCIPGCESLEKI--------GPN--E--YEATVKLKV-GPVKG-TFKGKVELSDLDP 70 (144)
T ss_pred EEEecCCHHHHHHHhcCH-HHHHhhccchhhcccc--------CCC--e--EEEEEEEEE-ccEEE-EEEEEEEEEecCC
Confidence 457899999999998753 2344555443332111 112 1 222222222 22221 111112233333
Q ss_pred CceEEEEEeeeCCCCCCCCeeEEEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeeeeeeccccccHHHHHHHHHHH
Q 003874 101 GQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANL 180 (790)
Q Consensus 101 ~~~~~v~~~~~tpdVP~g~~F~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K~~Ie~~~~~G~~~~~~~~~~~ 180 (790)
+..|.+...-..+ +........|-|+ .. ++.|+|..+..+++.+ .++.|...-.....+....++.+.
T Consensus 71 ~~~~~~~~~~~~~----~~~~~~~~~~~l~-----~~-~~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~ 138 (144)
T cd05018 71 PESYTITGEGKGG----AGFVKGTARVTLE-----PD-GGGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFEN 138 (144)
T ss_pred CcEEEEEEEEcCC----CceEEEEEEEEEE-----ec-CCcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHH
Confidence 3445555433222 4567889999999 44 5679998888888765 455555555555666666666666
Q ss_pred HHhhc
Q 003874 181 LAQNL 185 (790)
Q Consensus 181 l~~~~ 185 (790)
|++.+
T Consensus 139 l~~~~ 143 (144)
T cd05018 139 LASKI 143 (144)
T ss_pred HHHhh
Confidence 66553
No 156
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=82.33 E-value=0.97 Score=41.00 Aligned_cols=65 Identities=15% Similarity=0.253 Sum_probs=42.5
Q ss_pred cccceeccccc-ccccCceEEEeccEEEEEec---------------cCCCeEEEEEecccceeeEEccccccccCCCcE
Q 003874 469 LIKDFTCYLKR-KMPLQGRLFLSARIVGFYAN---------------LFGNKTKFFFLWEDIEDIQILSPSLATVGSPSL 532 (790)
Q Consensus 469 l~~~f~C~l~~-~i~~~Grlyis~~~icF~s~---------------~~g~~t~~~i~~~dI~~I~k~~~~~~~~~~~~i 532 (790)
++-.+.|.+-. .....|.+.++.+++.|..+ .-.......+|++||..|.+..- .+-.-++
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRy---llr~~Al 78 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRY---LLRDTAL 78 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEE---TTEEEEE
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHh---cCcceEE
Confidence 44567888844 33467999999999999977 22234457899999999998762 2222367
Q ss_pred EEEE
Q 003874 533 VIIL 536 (790)
Q Consensus 533 ~i~l 536 (790)
.|++
T Consensus 79 EiF~ 82 (106)
T PF14844_consen 79 EIFF 82 (106)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 157
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=80.46 E-value=41 Score=30.83 Aligned_cols=105 Identities=5% Similarity=0.006 Sum_probs=53.1
Q ss_pred ccccCCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCC-CCceEEEEEEEecccccCCCceeceEEEEeecCCC-C
Q 003874 623 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVK-PGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASG-E 700 (790)
Q Consensus 623 ~~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~-~~~~~R~~sY~~n~~i~~~~~~vt~~Q~~~~~~~~-~ 700 (790)
+.++++|++.+|+++.|.+-+.+++.. +..+.. .... ..+..|.+.+. .+ .. ..+......+. .
T Consensus 6 ~~~i~a~~~~V~~~l~d~~~~~~w~~~--~~~~~~---~~~~~~~g~~~~~~~~----~g---~~--~~~~i~~~~~~~~ 71 (140)
T cd07821 6 SVTIDAPADKVWALLSDFGGLHKWHPA--VASCEL---EGGGPGVGAVRTVTLK----DG---GT--VRERLLALDDAER 71 (140)
T ss_pred EEEECCCHHHHHHHHhCcCchhhhccC--cceEEe---ecCCCCCCeEEEEEeC----CC---CE--EEEEehhcCccCC
Confidence 457899999999988766655565542 222222 1111 12445555543 12 11 12222222233 3
Q ss_pred cEEEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEe
Q 003874 701 GWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWL 748 (790)
Q Consensus 701 ~~vv~~~~t~~dVPygd~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w~ 748 (790)
.+... ... .+.|+.+ ....|.++..+ +++|+|.......-.
T Consensus 72 ~i~~~-~~~-~~~~~~~---~~~~~~~~~~~--~~~t~v~~~~~~~~~ 112 (140)
T cd07821 72 RYSYR-IVE-GPLPVKN---YVATIRVTPEG--DGGTRVTWTAEFDPP 112 (140)
T ss_pred EEEEE-ecC-CCCCccc---ceEEEEEEECC--CCccEEEEEEEEecC
Confidence 33332 221 1344433 57789999877 457876665554443
No 158
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=80.29 E-value=26 Score=35.10 Aligned_cols=143 Identities=11% Similarity=0.014 Sum_probs=77.2
Q ss_pred ceEEeeEEecCcccccccccCCCchhHHHHHHHhCccceeeCcCcccCCCCceeEEEEEEEee-cCCCceeeEE-EEEEE
Q 003874 18 GILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKA-ATKLVKAVKA-TEQQT 95 (790)
Q Consensus 18 ~~~~~~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~-~~~~~k~~~~-~e~q~ 95 (790)
.+-..-+++++++++++++. |...++.+... +.+...-. ..++ . ..+.|... ...+++.-.. +....
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~--d~e~~~~w~~~--~~~~~vie--~~~~---~--~~i~~~~~~~p~pvs~Rdfv~~~~~ 110 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLR--DTESYPQWMPN--CKESRVLK--RTDD---N--ERSVYTVIDLPWPVKDRDMVLRSTT 110 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHh--hhHhHHHHHhh--cceEEEee--cCCC---C--cEEEEEEEecccccCCceEEEEEEE
Confidence 35566779999999999987 45566555553 23322211 1111 1 23333322 2233422111 11111
Q ss_pred EEeeCCceEEEEEeeeCCCCCCCC----eeEEEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeeeeeeccccccHH
Q 003874 96 YLKANGQEFAILVTVSTPDVPYGN----TFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLK 171 (790)
Q Consensus 96 ~~~~~~~~~~v~~~~~tpdVP~g~----~F~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K~~Ie~~~~~G~~ 171 (790)
....++..++|......+++|-.. .+.....|+|. +.++++|++.....+++.+ .+-+.+|-.-+..+..
T Consensus 111 ~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~-----~~~~~~t~vt~~~~~dp~g-~iP~~lv~~~~~~~~~ 184 (195)
T cd08876 111 EQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFT-----PLGNGKTRVTYQAYADPGG-SIPGWLANAFAKDAPY 184 (195)
T ss_pred EEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEE-----ECCCCeEEEEEEEEeCCCC-CCCHHHHHHHHHHHHH
Confidence 222224566665554444466432 25556679999 6777899999999999865 3455555555555554
Q ss_pred HHHHHH
Q 003874 172 ESFEQF 177 (790)
Q Consensus 172 ~~~~~~ 177 (790)
..++.|
T Consensus 185 ~~l~~l 190 (195)
T cd08876 185 NTLENL 190 (195)
T ss_pred HHHHHH
Confidence 444443
No 159
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=79.47 E-value=24 Score=36.05 Aligned_cols=152 Identities=14% Similarity=0.202 Sum_probs=94.7
Q ss_pred eEEeeEE-ecCcccccccccCCCchhH-HHHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecCCCceeeEEEEEEEE
Q 003874 19 ILLDQLY-QVSPCDLNTFLFAPDSQFR-KDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTY 96 (790)
Q Consensus 19 ~~~~~~~-~~~~~~l~~llf~~~s~f~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~~~k~~~~~e~q~~ 96 (790)
..+--+| .++++.|+++|. |..+. +|.....+...++..+ ..+ .+.+-|...+.-|++.=-.+-....
T Consensus 52 ~k~~~~~~~~s~~~~~~~l~--D~~~r~~Wd~~~~~~~~le~~~----~~~----~~i~y~~~~~P~P~s~RD~V~~r~~ 121 (209)
T cd08870 52 YLVRGVFEDCTPELLRDFYW--DDEYRKKWDETVIEHETLEEDE----KSG----TEIVRWVKKFPFPLSDREYVIARRL 121 (209)
T ss_pred EEEEEEEcCCCHHHHHHHHc--ChhhHhhhhhheeeEEEEEecC----CCC----cEEEEEEEECCCcCCCceEEEEEEE
Confidence 4455667 679999999998 45655 5666666666664322 112 4555555556567743333322333
Q ss_pred EeeCCceEE-EEEeeeCCCCCCCCeeE---EEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeeeeeeccccccHHH
Q 003874 97 LKANGQEFA-ILVTVSTPDVPYGNTFN---VQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKE 172 (790)
Q Consensus 97 ~~~~~~~~~-v~~~~~tpdVP~g~~F~---v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K~~Ie~~~~~G~~~ 172 (790)
...+++.++ +..++.-|.+|-.+.-+ ....|+|+|-+ .+++.|++.+.+..+-.|+ +=+.++-..+..|+-.
T Consensus 122 ~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~---~~~~~t~~~~~~~~dp~G~-IP~wlvN~~~~~~~~~ 197 (209)
T cd08870 122 WESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVK---GDGQGSACEVTYFHNPDGG-IPRELAKLAVKRGMPG 197 (209)
T ss_pred EEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEec---CCCCceEEEEEEEECCCCC-CCHHHHHHHHHhhhHH
Confidence 333244444 45556667899853333 34679999422 2678899888888875433 4455667777889988
Q ss_pred HHHHHHHHHHhh
Q 003874 173 SFEQFANLLAQN 184 (790)
Q Consensus 173 ~~~~~~~~l~~~ 184 (790)
++..|.++++++
T Consensus 198 ~l~~l~~a~~~Y 209 (209)
T cd08870 198 FLKKLENALRKY 209 (209)
T ss_pred HHHHHHHHHhcC
Confidence 889888888654
No 160
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=78.96 E-value=16 Score=34.88 Aligned_cols=74 Identities=15% Similarity=0.290 Sum_probs=46.5
Q ss_pred eeecccCC-CCCeEeeEEEEEeec---CCCCeEEEEEEeeCCCCCCC----CccccEEEeceecCCCCceeEEEEccccc
Q 003874 337 TSSVQLQT-CDPQWHDILEFDAME---EPPSVLDVEVFDFDGPFDQA----TSLGHAEINFLKHTSTELADMWVSLEGKL 408 (790)
Q Consensus 337 kT~v~~~t-lnP~WnE~f~f~v~~---~~~~~L~v~V~D~d~~~~~d----d~LG~~~i~L~~l~~~~~~~~w~~L~~k~ 408 (790)
.|+...-+ .+|.|||.+.|.+.- +....|.|.||..+. .... ..||.+.++|=... +.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~-~~~~~~~~~~lgw~n~~lFd~~-~~------------ 88 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS-KKKSKKKKVPLGWVNLPLFDYR-GQ------------ 88 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC-STTT--EEEEEEEEEEESB-TT-SB------------
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC-CCccccceeEEEEEEEEeECCC-Cc------------
Confidence 55555544 799999999998643 345689999999886 3443 58898888876531 11
Q ss_pred cCcCCceeEEEEEEecCC
Q 003874 409 AQSAQSKVHLRIFLENNN 426 (790)
Q Consensus 409 ~~~~~G~l~L~i~l~~~~ 426 (790)
=.+|...|.+|-....
T Consensus 89 --L~~G~~~L~lW~~~~~ 104 (142)
T PF00792_consen 89 --LRQGPQKLSLWPDEEP 104 (142)
T ss_dssp --BEEEEEEEE-EET-TT
T ss_pred --ccCCCEEEEEEcCCCC
Confidence 1246677777654433
No 161
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=78.88 E-value=31 Score=35.15 Aligned_cols=119 Identities=8% Similarity=0.031 Sum_probs=63.3
Q ss_pred ccccCCCHHHHhh-hccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEecc-ccc-CCCc-eeceEEEEeecCC
Q 003874 623 NAELPISVKALME-MFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNR-HVS-IFGG-EVTCTQQKSPLAS 698 (790)
Q Consensus 623 ~~~~p~s~~~lf~-lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~-~i~-~~~~-~vt~~Q~~~~~~~ 698 (790)
..+++++++.+|+ ++.|.+...++.......++- . ..+...+ +.|...+ +.+ +... .+...++ ....+
T Consensus 53 ~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i-~-----~~d~~~~-i~y~~~~~~~~~~vs~RDfV~~r~-~~~~~ 124 (208)
T cd08868 53 TGVLDCPAEFLYNELVLNVESLPSWNPTVLECKII-Q-----VIDDNTD-ISYQVAAEAGGGLVSPRDFVSLRH-WGIRE 124 (208)
T ss_pred EEEEcCCHHHHHHHHHcCccccceecCcccceEEE-E-----EecCCcE-EEEEEecCcCCCcccccceEEEEE-EEecC
Confidence 3577999999997 887655433333322211111 0 0112233 4454322 222 2122 2333333 22333
Q ss_pred CCcEEEE-EEEecCCCCCCCce-E---EEEEEEEEecCCCCCccEEEEEEEEEEecc
Q 003874 699 GEGWIVN-EVMSLHDVPFDDHF-R---VHFRYEIEKSPLAHNACKCAIYIGISWLKS 750 (790)
Q Consensus 699 ~~~~vv~-~~~t~~dVPygd~F-~---v~~ry~i~~~~~~~~~c~l~V~~~V~w~Ks 750 (790)
+.++|. ....-+..|-..-| + ....|.|++.+.++++|++...+.++..++
T Consensus 125 -~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~ 180 (208)
T cd08868 125 -NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW 180 (208)
T ss_pred -CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC
Confidence 445544 33333566655543 3 447899999875568899999999988876
No 162
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=77.54 E-value=39 Score=34.00 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=52.2
Q ss_pred CCceEEEE-EeeeCCCCCC-CCee---EEEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeeeeeeccccccHHHHH
Q 003874 100 NGQEFAIL-VTVSTPDVPY-GNTF---NVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESF 174 (790)
Q Consensus 100 ~~~~~~v~-~~~~tpdVP~-g~~F---~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K~~Ie~~~~~G~~~~~ 174 (790)
.++.|+|. .++..|++|- .++- .....|+|. +.+++.|++.....++..|. +-+.++-..+..+.-..+
T Consensus 120 ~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~-----p~~~~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~ 193 (206)
T smart00234 120 VDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIE-----PLGNGPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFA 193 (206)
T ss_pred CCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEE-----ECCCCCeEEEEEEEEecCCC-ccceeehhhhhhhHHHHH
Confidence 45555554 5777888874 3433 356789999 55567799999999999886 235555555556665555
Q ss_pred HHHHHHHHhh
Q 003874 175 EQFANLLAQN 184 (790)
Q Consensus 175 ~~~~~~l~~~ 184 (790)
..+...|.+.
T Consensus 194 ~~~~~~~~~~ 203 (206)
T smart00234 194 KTWVATLQKH 203 (206)
T ss_pred HHHHHHHHHH
Confidence 6665555544
No 163
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=76.43 E-value=12 Score=38.45 Aligned_cols=149 Identities=13% Similarity=0.013 Sum_probs=85.2
Q ss_pred EEeeEEecCcccccccccCCCchhHHHHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecCCC---ceeeEEEEEEEE
Q 003874 20 LLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKL---VKAVKATEQQTY 96 (790)
Q Consensus 20 ~~~~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~~---~k~~~~~e~q~~ 96 (790)
-+..++++++++|+.-||.....+-+|......+.-++..+ ++ +. +.|.+.+..+ ++.=-..-.+..
T Consensus 52 k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id-----~~----~~-i~y~~~~p~p~~~vs~RD~V~~~~~ 121 (209)
T cd08905 52 RLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIG-----KD----TL-ITHEVAAETAGNVVGPRDFVSVRCA 121 (209)
T ss_pred EEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcC-----CC----ce-EEEEEeccCCCCccCccceEEEEEE
Confidence 35668889999999777853223344444333333332222 11 33 4444544433 543333334444
Q ss_pred EeeCCceEEEEEeeeCCCCCCC-Cee---EEEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeeeeeeccccccHHH
Q 003874 97 LKANGQEFAILVTVSTPDVPYG-NTF---NVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKE 172 (790)
Q Consensus 97 ~~~~~~~~~v~~~~~tpdVP~g-~~F---~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K~~Ie~~~~~G~~~ 172 (790)
.+.++..+.+..++.-|..|=. ++- .....|.|+|-++ ++++|++.....++..|. +=+.++.+.+-+.+-+
T Consensus 122 ~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~---~~~~t~v~~~~~~DpkG~-iP~~lvN~~~~~~~~~ 197 (209)
T cd08905 122 KRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAG---DPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVD 197 (209)
T ss_pred EEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCC---CCCceEEEEEEeecCCCC-CCHHHHHHHhHHhHHH
Confidence 4445555556666666666643 333 3557899994221 237898888888887776 2344566666777777
Q ss_pred HHHHHHHHHH
Q 003874 173 SFEQFANLLA 182 (790)
Q Consensus 173 ~~~~~~~~l~ 182 (790)
+|..|.+.|.
T Consensus 198 ~~~~Lr~~~~ 207 (209)
T cd08905 198 FANHLRQRMA 207 (209)
T ss_pred HHHHHHHHHh
Confidence 7777776664
No 164
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=76.40 E-value=5.1 Score=35.37 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=35.2
Q ss_pred CceEEEeccEEEEEeccCCCeEEEEEecccceeeEEccccccccCCCcEEEEE
Q 003874 484 QGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIIL 536 (790)
Q Consensus 484 ~Grlyis~~~icF~s~~~g~~t~~~i~~~dI~~I~k~~~~~~~~~~~~i~i~l 536 (790)
.|++|+|.+.++|.-+.......+.+|+++|..++...+-+ ..+|-|++.+
T Consensus 37 ~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~--~sSpKI~l~l 87 (89)
T PF11605_consen 37 NGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFL--KSSPKIILHL 87 (89)
T ss_dssp CEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STT--SSS-EEEEEE
T ss_pred CCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcccc--CCCCeEEEEe
Confidence 49999999999997665444446899999999998776422 1235565554
No 165
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=75.40 E-value=20 Score=32.17 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=45.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----eeeecccCCCCCeEeeEEEEEeec---CCCCeEEEEEEeeCC
Q 003874 304 LTVALVEGVNLASSEMTGLSDPYVVFTC--NGKT----RTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFDG 374 (790)
Q Consensus 304 L~V~vl~A~~L~~~d~~g~sDPyV~v~l--~~~~----~kT~v~~~tlnP~WnE~f~f~v~~---~~~~~L~v~V~D~d~ 374 (790)
+.+.+...++.........++-||.+.+ |++. ..|+.+.-...+.|||...|++.- +....|.+++|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 4556666666654433333578888765 4442 245555445569999999997532 235689999998654
No 166
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=74.99 E-value=28 Score=35.66 Aligned_cols=153 Identities=8% Similarity=0.049 Sum_probs=88.2
Q ss_pred eEEeeEEecCcccccccccCCCchhH-HHHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecCC---CceeeEEEEEE
Q 003874 19 ILLDQLYQVSPCDLNTFLFAPDSQFR-KDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATK---LVKAVKATEQQ 94 (790)
Q Consensus 19 ~~~~~~~~~~~~~l~~llf~~~s~f~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~---~~k~~~~~e~q 94 (790)
.-+.-++++++++++++|+-.+..+. +|.....++.-++..+ ++ +. +.|.+++.. .++.=-..-.+
T Consensus 48 ~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id-----~~----~~-i~~~~~p~~~~~~vs~RDfV~~~ 117 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAIS-----DD----VS-VCRTVTPSAAMKIISPRDFVDVV 117 (208)
T ss_pred EEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEec-----CC----EE-EEEEecchhcCCCcCCCceEEEE
Confidence 55678889999999999994333332 5555555555444333 12 22 366655443 24322222223
Q ss_pred EEEeeCCceEEEEE-eeeCCCC-CCCCeeEEEEE-EEEecCCCCCCCCCccEEEEEEEEEEeeeeeeeeeeeccccccHH
Q 003874 95 TYLKANGQEFAILV-TVSTPDV-PYGNTFNVQLL-YKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLK 171 (790)
Q Consensus 95 ~~~~~~~~~~~v~~-~~~tpdV-P~g~~F~v~~~-y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K~~Ie~~~~~G~~ 171 (790)
...+.++..|++.. ++.-|.. |--++.+++.+ ++..+-|- +.++++|++.-...+++.|. +=+.+|-+...+++-
T Consensus 118 ~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~-~~~~~~t~v~~~~~~DpkG~-iP~~lvn~~~~~~~~ 195 (208)
T cd08903 118 LVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPV-PGEPDKTQLVSFFQTDLSGY-LPQTVVDSFFPASMA 195 (208)
T ss_pred EEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEEC-CCCCCceEEEEEEEeccCCC-cCHHHHHHHhhHHHH
Confidence 33333334454443 3434444 45577777666 44443332 34678899999988888654 224556666678888
Q ss_pred HHHHHHHHHHHh
Q 003874 172 ESFEQFANLLAQ 183 (790)
Q Consensus 172 ~~~~~~~~~l~~ 183 (790)
++|..|.+.|.+
T Consensus 196 ~~~~~Lr~~~~~ 207 (208)
T cd08903 196 EFYNNLTKAVKA 207 (208)
T ss_pred HHHHHHHHHHhh
Confidence 888888777754
No 167
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=71.75 E-value=14 Score=36.95 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=31.5
Q ss_pred EeeeecccCCCCCeEeeEEEEEeecCC--CCeEEEEEEeeCCCCCCC--CccccEEEecee
Q 003874 335 TRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDFDGPFDQA--TSLGHAEINFLK 391 (790)
Q Consensus 335 ~~kT~v~~~tlnP~WnE~f~f~v~~~~--~~~L~v~V~D~d~~~~~d--d~LG~~~i~L~~ 391 (790)
.+.|.+..++.+|.|+|+|.+.+..+. ...|.|++++....-+++ ..+|.+.+||-.
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 567888888899999999999986553 457889999865411111 466776666654
No 168
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=70.84 E-value=1.3e+02 Score=30.88 Aligned_cols=146 Identities=10% Similarity=0.034 Sum_probs=73.1
Q ss_pred cc-CCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEE-ecccccCCCceeceEEEEeecCCCCcE
Q 003874 625 EL-PISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYR-FNRHVSIFGGEVTCTQQKSPLASGEGW 702 (790)
Q Consensus 625 ~~-p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~-~n~~i~~~~~~vt~~Q~~~~~~~~~~~ 702 (790)
++ .++++.+|+++.|.+...++........ .+.... + + . .+.|. ++.|.....-........ ...++..+
T Consensus 54 ~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~-~ie~~d--~-~--~-~i~y~~~~~P~pvs~RDfV~~r~~-~~~~~~~v 125 (222)
T cd08871 54 IFPDVPAETLYDVLHDPEYRKTWDSNMIESF-DICQLN--P-N--N-DIGYYSAKCPKPLKNRDFVNLRSW-LEFGGEYI 125 (222)
T ss_pred EeCCCCHHHHHHHHHChhhhhhhhhhhceeE-EEEEcC--C-C--C-EEEEEEeECCCCCCCCeEEEEEEE-EeCCCEEE
Confidence 44 5899999996666665544444322111 122221 1 1 2 23333 233332111223222222 22333334
Q ss_pred EEEEEEecCCCCCCCce-E---EEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHHH
Q 003874 703 IVNEVMSLHDVPFDDHF-R---VHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVER 778 (790)
Q Consensus 703 vv~~~~t~~dVPygd~F-~---v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~g~~~~~k~~~~~~~k 778 (790)
++......+++|-.+.+ + ....|.|++.+ +++|++.....++..++. =+.+|.+-+....-..++.|-+.+++
T Consensus 126 i~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~--~~~t~vt~~~~~Dp~G~I-P~~lvN~~~~~~~~~~l~~l~k~~~~ 202 (222)
T cd08871 126 IFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTG--PKGCTLTYVTQNDPKGSL-PKWVVNKATTKLAPKVMKKLHKAALK 202 (222)
T ss_pred EEeccccCCCCCCCCCeEEeEEEccEEEEEECC--CCCEEEEEEEecCCCCCc-CHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55544455788866653 3 23468888877 688999999999988762 12222222233333444455455554
Q ss_pred HHH
Q 003874 779 EIL 781 (790)
Q Consensus 779 ~v~ 781 (790)
+-+
T Consensus 203 y~~ 205 (222)
T cd08871 203 YPE 205 (222)
T ss_pred HHH
Confidence 443
No 169
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=70.53 E-value=29 Score=31.89 Aligned_cols=134 Identities=8% Similarity=0.125 Sum_probs=64.1
Q ss_pred ceEEeeEEecCcccccccccCCCchhHHHHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecCCCceeeEEEEEEEEE
Q 003874 18 GILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYL 97 (790)
Q Consensus 18 ~~~~~~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~~~k~~~~~e~q~~~ 97 (790)
++-...++++|++++|++|-.++ .+-++.-..++. ++..+++ ..| ..|.+.+... ....+++.
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~-~~~~w~~~~~~~-~~~~~~~---~~g---~~~~~~~~~g---------~~~~~~i~ 64 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFG-GLHKWHPAVASC-ELEGGGP---GVG---AVRTVTLKDG---------GTVRERLL 64 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcC-chhhhccCcceE-EeecCCC---CCC---eEEEEEeCCC---------CEEEEEeh
Confidence 45667899999999999999753 444444332222 2222222 112 2344444321 11233444
Q ss_pred eeCC--ceEEEEEeeeCCCCCCCCeeEEEEEEEEecCCCCCCCCCccEEEEEEEEEEeeee-eeeeeeeccccccHHHHH
Q 003874 98 KANG--QEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQST-MMRGMIEGGARQGLKESF 174 (790)
Q Consensus 98 ~~~~--~~~~v~~~~~tpdVP~g~~F~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~-~~K~~Ie~~~~~G~~~~~ 174 (790)
..+. ..+..... -.+-|+. .....|-|. ..+++.|++.... .|.... +.-.++.+....+++..+
T Consensus 65 ~~~~~~~~i~~~~~--~~~~~~~---~~~~~~~~~-----~~~~~~t~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l 132 (140)
T cd07821 65 ALDDAERRYSYRIV--EGPLPVK---NYVATIRVT-----PEGDGGTRVTWTA--EFDPPEGLTDELARAFLTGVYRAGL 132 (140)
T ss_pred hcCccCCEEEEEec--CCCCCcc---cceEEEEEE-----ECCCCccEEEEEE--EEecCCCcchHHHHHHHHHHHHHHH
Confidence 4432 33333222 1123433 346788899 5556678766554 455542 222223333334444444
Q ss_pred HHHHHH
Q 003874 175 EQFANL 180 (790)
Q Consensus 175 ~~~~~~ 180 (790)
+.|.+.
T Consensus 133 ~~L~~~ 138 (140)
T cd07821 133 AALKAA 138 (140)
T ss_pred HHHHHh
Confidence 444443
No 170
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=67.71 E-value=87 Score=30.38 Aligned_cols=139 Identities=14% Similarity=0.083 Sum_probs=77.4
Q ss_pred ccccCCCHHHHhhhccC-chHHHHHH-HHcCCcceeecCcccCCCCceEEEEEEEecccccCCCceeceEEEEeecCCCC
Q 003874 623 NAELPISVKALMEMFDG-GKLEHQVM-EKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGE 700 (790)
Q Consensus 623 ~~~~p~s~~~lf~lF~~-~~f~~~~~-~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~~i~~~~~~vt~~Q~~~~~~~~~ 700 (790)
+.+++++++.||+.|.. ..+..+++ +.-...++..+.|.. ++..|.++|.. +.+ .-...| ++...|..
T Consensus 9 E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~---gGSIk~~~f~~----~~~--~~~~Ke-kve~~D~~ 78 (151)
T PF00407_consen 9 EVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGP---GGSIKKWTFGP----GGP--FKYVKE-KVEAIDEE 78 (151)
T ss_dssp EEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSST---TT-EEEEEEET----TSS--EEEEEE-EEEEEETT
T ss_pred EEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCC---CCeEEEEEecC----CCC--cceeEE-EEEeecCC
Confidence 34678999999997754 33566665 333444666788853 47899999982 222 122233 44444444
Q ss_pred cEEEE-EEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhh-hHHhHHHHHHHHHHHHHH
Q 003874 701 GWIVN-EVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQN-ITEKFTHRLKEMIELVER 778 (790)
Q Consensus 701 ~~vv~-~~~t~~dVPygd~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~-~~~g~~~~~k~~~~~~~k 778 (790)
...+. ++.- |=+.+++..-.....+.+.+ .++|.+ .+.++|-+-. +.. .-+...+.+..+++.++.
T Consensus 79 ~~~~~y~viE--Gd~l~~~~~~~~~~~~~~~~--~g~~v~--k~t~~Ye~~~------~~~~~p~~~~~~~~~~~K~iea 146 (151)
T PF00407_consen 79 NKTITYTVIE--GDVLGDYKSFKSTIQKIPKG--DGGCVV--KWTIEYEKKG------EDVPPPEKYLDFAVGMFKAIEA 146 (151)
T ss_dssp TTEEEEEEEE--ETTGTTTEEEEEEEEEEEET--TSCEEE--EEEEEEEESS------TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEe--ccccccEEEEEEEEEecCCC--CCceEE--EEEEEEEecC------CCCCCcHHHHHHHHHHHHHHHH
Confidence 33333 4444 33455666655555666555 455644 4445565422 111 334455557778888888
Q ss_pred HHHhc
Q 003874 779 EILFA 783 (790)
Q Consensus 779 ~v~~~ 783 (790)
++..+
T Consensus 147 yLlan 151 (151)
T PF00407_consen 147 YLLAN 151 (151)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 87654
No 171
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=67.64 E-value=1.1e+02 Score=28.84 Aligned_cols=137 Identities=5% Similarity=0.004 Sum_probs=72.8
Q ss_pred cccCCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEecccccCCCceeceEEEEeecC-CCCcE
Q 003874 624 AELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLA-SGEGW 702 (790)
Q Consensus 624 ~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~~i~~~~~~vt~~Q~~~~~~-~~~~~ 702 (790)
.+++++++.+++++.|-+-+....- |+..+.. ...+.+.-.++.. +++......-.-+..... ....+
T Consensus 5 ~~v~a~pe~vw~~l~D~~~~~~~~p--g~~~~~~-----~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~ 73 (146)
T cd07823 5 FTVPAPPDRVWALLLDIERVAPCLP--GASLTEV-----EGDDEYKGTVKVK----LGPISASFKGTARLLEDDEAARRA 73 (146)
T ss_pred EEecCCHHHHHHHhcCHHHHHhcCC--Cceeccc-----cCCCeEEEEEEEE----EccEEEEEEEEEEEEeccCCCcEE
Confidence 4579999999998888765553322 2222221 1122333444444 444322222111122222 23333
Q ss_pred EEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecc--cchhhhhhhhhHHhHHHHHHHHHHHHHHHH
Q 003874 703 IVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKS--TKFQQRITQNITEKFTHRLKEMIELVEREI 780 (790)
Q Consensus 703 vv~~~~t~~dVPygd~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w~Ks--t~~K~~Iek~~~~g~~~~~k~~~~~~~k~v 780 (790)
.+. -.. .+.+.+....+...|.++.. +.+|+|.+...++.... .+++.+|++-+. ..++++++-+++.+
T Consensus 74 ~~~-~~g-~~~~~~g~~~~~~~~~l~~~---~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~----~~~~~~~~~l~~~~ 144 (146)
T cd07823 74 VLE-ATG-KDARGQGTAEATVTLRLSPA---GGGTRVTVDTDLALTGKLAQFGRGGIGDVAG----RLLAQFAANLEARL 144 (146)
T ss_pred EEE-EEE-ecCCCcceEEEEEEEEEEec---CCcEEEEEEEEEEEeeEhHHhChhHHHHHHH----HHHHHHHHHHHHHh
Confidence 332 111 23455556688888888873 36899999998887765 235555555444 45555555555543
No 172
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=67.37 E-value=52 Score=33.87 Aligned_cols=146 Identities=12% Similarity=0.133 Sum_probs=79.0
Q ss_pred eEE-ecCcccccccccCCCchhH-HHHHHHhCccceeeCcCcccCCCCceeEEEEEEEe-ecCCCceeeEEEEEEEEEee
Q 003874 23 QLY-QVSPCDLNTFLFAPDSQFR-KDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMK-AATKLVKAVKATEQQTYLKA 99 (790)
Q Consensus 23 ~~~-~~~~~~l~~llf~~~s~f~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~-~~~~~~k~~~~~e~q~~~~~ 99 (790)
-++ .++++.++++|.. ..+. ++-.....+..+..-+ ++ . .+.|.. ....+++.=-..-.....+.
T Consensus 53 ~~~~~~s~e~~~~~l~D--~~~r~~Wd~~~~e~~~ie~~d-----~~----~-~i~y~~~~~P~pvs~RDfV~~r~~~~~ 120 (222)
T cd08871 53 AIFPDVPAETLYDVLHD--PEYRKTWDSNMIESFDICQLN-----PN----N-DIGYYSAKCPKPLKNRDFVNLRSWLEF 120 (222)
T ss_pred EEeCCCCHHHHHHHHHC--hhhhhhhhhhhceeEEEEEcC-----CC----C-EEEEEEeECCCCCCCCeEEEEEEEEeC
Confidence 345 4899999998873 4444 3333334444443221 11 1 233332 22234532112222223333
Q ss_pred CCceEEEEEeeeCCCCCCCCe-eE---EEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeeeeeeccccccHHHHHH
Q 003874 100 NGQEFAILVTVSTPDVPYGNT-FN---VQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFE 175 (790)
Q Consensus 100 ~~~~~~v~~~~~tpdVP~g~~-F~---v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K~~Ie~~~~~G~~~~~~ 175 (790)
++..+++..++..|++|-..- -+ ....|+|. +.++++|++.....++..|+- =+.++-+.+....-..+.
T Consensus 121 ~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~-----p~~~~~t~vt~~~~~Dp~G~I-P~~lvN~~~~~~~~~~l~ 194 (222)
T cd08871 121 GGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIR-----PTGPKGCTLTYVTQNDPKGSL-PKWVVNKATTKLAPKVMK 194 (222)
T ss_pred CCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEE-----ECCCCCEEEEEEEecCCCCCc-CHHHHHHHHHHHhHHHHH
Confidence 434445677788889986654 22 23468999 566788999999999888861 122223333444546666
Q ss_pred HHHHHHHhhcc
Q 003874 176 QFANLLAQNLK 186 (790)
Q Consensus 176 ~~~~~l~~~~~ 186 (790)
.|.+++.++-+
T Consensus 195 ~l~k~~~~y~~ 205 (222)
T cd08871 195 KLHKAALKYPE 205 (222)
T ss_pred HHHHHHHHHHH
Confidence 77777766643
No 173
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=67.21 E-value=84 Score=30.15 Aligned_cols=120 Identities=13% Similarity=0.162 Sum_probs=64.0
Q ss_pred CceEEeeEEecCcccccccccCCCchhHHHHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecCCCceeeEEEEEEEE
Q 003874 17 GGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTY 96 (790)
Q Consensus 17 g~~~~~~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~~~k~~~~~e~q~~ 96 (790)
|.+-...++++|++++|+++-..+..+.+.+...=+..++..++ ... --.|.++|.-+. +.-.+.| .+
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~--~~~----GsvR~~~~~~~~----~~~~~kE--~l 68 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGD--GGP----GSIKLITFGPGG----KVKYVKE--RI 68 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecC--CCC----ceEEEEEEcCCC----cceEEEE--EE
Confidence 44566778999999999998753223444444322333344444 221 237888884333 2223333 34
Q ss_pred EeeCCceEEEEEeeeCCCCCCCCeeEEEEEEEEecCCCCCCCCCccEEEEEEEEEEeee
Q 003874 97 LKANGQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQS 155 (790)
Q Consensus 97 ~~~~~~~~~v~~~~~tpdVP~g~~F~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~ 155 (790)
...|.....+.-++.--|.|-...=+-.....+. +.+++.|.+ .|.+.|..-
T Consensus 69 ~~~D~~~~~~~y~vveg~~~~~~~~~y~~t~~v~-----~~~~~~t~v--~Wt~~ye~~ 120 (148)
T cd07816 69 DAVDEENKTYKYTVIEGDVLKDGYKSYKVEIKFV-----PKGDGGCVV--KWTIEYEKK 120 (148)
T ss_pred EEEcccccEEEEEEEecccccCceEEEEEEEEEE-----ECCCCCEEE--EEEEEEEEC
Confidence 4455555555555555555422222223344566 456677754 477777654
No 174
>PRK10724 hypothetical protein; Provisional
Probab=66.31 E-value=1.4e+02 Score=29.29 Aligned_cols=134 Identities=12% Similarity=0.153 Sum_probs=68.8
Q ss_pred ccccCCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEecccccCCCceeceEEEEeecCCCCcE
Q 003874 623 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGW 702 (790)
Q Consensus 623 ~~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~~i~~~~~~vt~~Q~~~~~~~~~~~ 702 (790)
+..++.+++.+|+|..|-+-+.+|+--+. ...+-... + +.. ....+ ++..+- .-..-.+........
T Consensus 20 ~~~v~~s~~~v~~lv~Dve~yp~flp~~~--~s~vl~~~--~-~~~--~a~l~----v~~~g~-~~~f~srv~~~~~~~- 86 (158)
T PRK10724 20 TALVPYSAEQMYQLVNDVQSYPQFLPGCT--GSRVLEST--P-GQM--TAAVD----VSKAGI-SKTFTTRNQLTSNQS- 86 (158)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHhCcccC--eEEEEEec--C-CEE--EEEEE----EeeCCc-cEEEEEEEEecCCCE-
Confidence 35679999999998888777777776543 33332221 1 112 22222 121111 111111121222222
Q ss_pred EEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHHHHHHh
Q 003874 703 IVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREILF 782 (790)
Q Consensus 703 vv~~~~t~~dVPygd~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~g~~~~~k~~~~~~~k~v~~ 782 (790)
|.-.+. .+ |+.. .+..|.+++.+ +++|+|.....++|. +.++..+... -.++..+.|++..++.+..
T Consensus 87 -I~~~~~-~G-pF~~---l~g~W~f~p~~--~~~t~V~~~l~fef~-s~l~~~~~~~----~~~~~~~~mv~AF~~Ra~~ 153 (158)
T PRK10724 87 -ILMQLV-DG-PFKK---LIGGWKFTPLS--QEACRIEFHLDFEFT-NKLIELAFGR----VFKELASNMVQAFTVRAKE 153 (158)
T ss_pred -EEEEec-CC-Chhh---ccceEEEEECC--CCCEEEEEEEEEEEc-hHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 222222 33 5444 89999999987 567887777777743 4444422222 2234455566555555544
No 175
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=65.60 E-value=1.7e+02 Score=30.06 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=54.2
Q ss_pred eeceEEEEeecCCCCcEEEEEEE-ecCCC-CCCCceEEE---EEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhh
Q 003874 686 EVTCTQQKSPLASGEGWIVNEVM-SLHDV-PFDDHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQN 760 (790)
Q Consensus 686 ~vt~~Q~~~~~~~~~~~vv~~~~-t~~dV-Pygd~F~v~---~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~ 760 (790)
.....++.. ..++..|++.... .-|.. |-.++.+-+ +=|.|++.+.+++.|++.....++.. .-.=|..|++.
T Consensus 110 DfV~vr~~~-r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~Dlk-G~lP~~vv~~~ 187 (204)
T cd08904 110 DFVDLVHIK-RYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELR-GNLSRSVIEKT 187 (204)
T ss_pred eEEEEEEEE-EeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCC-CCCCHHHHHHH
Confidence 344444322 2355667766333 33444 445555544 55889998876789999999997765 44457777777
Q ss_pred hHHhHHHHHHHHHH
Q 003874 761 ITEKFTHRLKEMIE 774 (790)
Q Consensus 761 ~~~g~~~~~k~~~~ 774 (790)
--+.+.+.+..+-+
T Consensus 188 ~~~~~~~f~~~~~~ 201 (204)
T cd08904 188 MPTNLVNLILDAKD 201 (204)
T ss_pred hHHHHHHHHHHHHH
Confidence 66666666665543
No 176
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=64.72 E-value=40 Score=34.25 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=32.0
Q ss_pred eEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEEeeC
Q 003874 334 KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 373 (790)
Q Consensus 334 ~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~D~d 373 (790)
..++|-+...+.+|.|+|++.+.+..+ ....|.+++++..
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S 94 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRS 94 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeec
Confidence 367888888889999999999988654 4567888887754
No 177
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=62.15 E-value=1.4e+02 Score=30.57 Aligned_cols=143 Identities=8% Similarity=-0.019 Sum_probs=70.4
Q ss_pred eccccCCCHHHHhh-hccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEecc--cccCCC-ceeceEEEEeecC
Q 003874 622 YNAELPISVKALME-MFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNR--HVSIFG-GEVTCTQQKSPLA 697 (790)
Q Consensus 622 ~~~~~p~s~~~lf~-lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~--~i~~~~-~~vt~~Q~~~~~~ 697 (790)
...+++++++.+++ +|.+.+...++...+...++ ...-+..+. +.|.+.. |.++.+ -.+...+.. ...
T Consensus 53 ~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~v------l~~id~~~~-i~y~~~~p~p~~~vs~RD~V~~~~~-~~~ 124 (209)
T cd08905 53 LEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKI------LQRIGKDTL-ITHEVAAETAGNVVGPRDFVSVRCA-KRR 124 (209)
T ss_pred EEEEecCCHHHHHHHHHhchhhhceecccchHHHH------HhhcCCCce-EEEEEeccCCCCccCccceEEEEEE-EEc
Confidence 35678999999996 99765533222222111000 000111122 3333322 222211 233333322 223
Q ss_pred CCCcEEEEEEEecCCCCC-CCceE---EEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHH
Q 003874 698 SGEGWIVNEVMSLHDVPF-DDHFR---VHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMI 773 (790)
Q Consensus 698 ~~~~~vv~~~~t~~dVPy-gd~F~---v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~g~~~~~k~~~ 773 (790)
++..+++......+..|= .++-+ ....|.|++.+.++++|++.-.+.++..++ .=+..+.+...+..-+.++.|-
T Consensus 125 ~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~~lvN~~~~~~~~~~~~~Lr 203 (209)
T cd08905 125 GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVDFANHLR 203 (209)
T ss_pred CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCHHHHHHHhHHhHHHHHHHHH
Confidence 444444454444455553 34443 457899999874458999998888887665 2344444444444444444443
No 178
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=61.78 E-value=37 Score=34.34 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=31.5
Q ss_pred EeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEEeeC
Q 003874 335 TRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 373 (790)
Q Consensus 335 ~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~D~d 373 (790)
.++|-+...+.+|.|+|++.+.+..+ ....|.+++++..
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S 94 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCS 94 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEee
Confidence 57899999999999999999998654 4567888887744
No 179
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=61.46 E-value=38 Score=32.16 Aligned_cols=66 Identities=11% Similarity=0.107 Sum_probs=47.2
Q ss_pred EeeeCCCCCCCCeeEEEEEEEEecCCCCCCCCCccEEEEEEEEEEeee--eeeeeeeeccccccHHHHHHHHHH
Q 003874 108 VTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQS--TMMRGMIEGGARQGLKESFEQFAN 179 (790)
Q Consensus 108 ~~~~tpdVP~g~~F~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~--~~~K~~Ie~~~~~G~~~~~~~~~~ 179 (790)
.+-...+.+-+....+...|-+. . .+..|+|.+...++.++. ++++.+|++-++.-+.+.++.+..
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~l~-----~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~ 142 (146)
T cd07823 75 LEATGKDARGQGTAEATVTLRLS-----P-AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEA 142 (146)
T ss_pred EEEEEecCCCcceEEEEEEEEEE-----e-cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHH
Confidence 33455566777777899999999 4 346799999999998887 577777777666666555554443
No 180
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=60.59 E-value=70 Score=32.40 Aligned_cols=121 Identities=12% Similarity=0.041 Sum_probs=71.1
Q ss_pred EEeeEEecCcccccccccCCCchhHHHHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecCCCceeeEEEEEEE-EEe
Q 003874 20 LLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQT-YLK 98 (790)
Q Consensus 20 ~~~~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~~~k~~~~~e~q~-~~~ 98 (790)
-+..++++++++++.+|+.. --+|.....++.-++... ++ +..+-|..+...|++.=-....+. ...
T Consensus 47 K~~~~v~a~~~~v~~~l~d~---r~~Wd~~~~~~~vie~id-----~~----~~i~y~~~~~p~pv~~RDfV~~r~~~~~ 114 (197)
T cd08869 47 RASTEVEAPPEEVLQRILRE---RHLWDDDLLQWKVVETLD-----ED----TEVYQYVTNSMAPHPTRDYVVLRTWRTD 114 (197)
T ss_pred EEEEEeCCCHHHHHHHHHHH---HhccchhhheEEEEEEec-----CC----cEEEEEEeeCCCCCCCceEEEEEEEEec
Confidence 45677788888888877631 123333333333332221 11 334446655555665433333322 223
Q ss_pred eCCceEEEEEeeeCC--CCCCCCe---eEEEEEEEEecCCCCCCCCCccEEEEEEEEEEeee--eee
Q 003874 99 ANGQEFAILVTVSTP--DVPYGNT---FNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQS--TMM 158 (790)
Q Consensus 99 ~~~~~~~v~~~~~tp--dVP~g~~---F~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~--~~~ 158 (790)
.++..|.|......| .+|= ++ +.....|.|+ +.++++|++.--..++..|+ +|+
T Consensus 115 ~~~g~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~-----p~~~~~t~vty~~~~Dp~G~iP~wl 175 (197)
T cd08869 115 LPKGACVLVETSVEHTEPVPL-GGVRAVVLASRYLIE-----PCGSGKSRVTHICRVDLRGRSPEWY 175 (197)
T ss_pred CCCCcEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEE-----ECCCCCeEEEEEEEECCCCCCCcee
Confidence 444567766555543 5766 53 4456789999 56678999999999999887 465
No 181
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=60.54 E-value=2e+02 Score=29.29 Aligned_cols=147 Identities=9% Similarity=-0.012 Sum_probs=83.1
Q ss_pred ccc-CCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEeccc--ccCCCceeceEEEEeecCCCC
Q 003874 624 AEL-PISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRH--VSIFGGEVTCTQQKSPLASGE 700 (790)
Q Consensus 624 ~~~-p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~~--i~~~~~~vt~~Q~~~~~~~~~ 700 (790)
.+| .++++.|++++.|.++..++....-..++- +..+. ...+.+.|....| +++ -...-..+.....++.
T Consensus 56 ~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~l----e~~~~-~~~~i~y~~~~~P~P~s~--RD~V~~r~~~~~~~~~ 128 (209)
T cd08870 56 GVFEDCTPELLRDFYWDDEYRKKWDETVIEHETL----EEDEK-SGTEIVRWVKKFPFPLSD--REYVIARRLWESDDRS 128 (209)
T ss_pred EEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEE----EecCC-CCcEEEEEEEECCCcCCC--ceEEEEEEEEEcCCCE
Confidence 456 679999999887888777776654322111 11111 1244444444444 332 1222222122222344
Q ss_pred cEEEEEEEecCCCCCCCceE---EEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHH
Q 003874 701 GWIVNEVMSLHDVPFDDHFR---VHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVE 777 (790)
Q Consensus 701 ~~vv~~~~t~~dVPygd~F~---v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~g~~~~~k~~~~~~~ 777 (790)
.+++.....-+.+|-.+.-+ ....|.|++.+.++++|++.+.+..+- +...=+.++...+..++-..++.|-+.+.
T Consensus 129 ~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 129 YVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred EEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 44444444435888764444 457899988732267888888888875 44455666677777777777777766665
Q ss_pred H
Q 003874 778 R 778 (790)
Q Consensus 778 k 778 (790)
+
T Consensus 208 ~ 208 (209)
T cd08870 208 K 208 (209)
T ss_pred c
Confidence 4
No 182
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=60.18 E-value=20 Score=33.08 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=30.9
Q ss_pred ccccCceEEEeccEEEEEeccCCCeEEEEEecccceeeEE
Q 003874 480 KMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQI 519 (790)
Q Consensus 480 ~i~~~Grlyis~~~icF~s~~~g~~t~~~i~~~dI~~I~k 519 (790)
.+..+|++.+..+-.-||.+-.. +--+.|||++|..|..
T Consensus 20 g~~~yGkimiGDkaFEFyn~~n~-~dyIQIPW~eI~~V~a 58 (118)
T PF06115_consen 20 GLGKYGKIMIGDKAFEFYNDRNV-EDYIQIPWEEIDYVIA 58 (118)
T ss_pred cccccCeEEEcccceEeecCCCh-hhcEEeChhheeEEEE
Confidence 34467999999999999876543 4457899999998876
No 183
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=59.39 E-value=1.2e+02 Score=31.04 Aligned_cols=151 Identities=15% Similarity=0.113 Sum_probs=83.6
Q ss_pred EEeeEE-ecCcccccccccCCCchhH-HHHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecCCCceeeEEEEEEEEE
Q 003874 20 LLDQLY-QVSPCDLNTFLFAPDSQFR-KDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYL 97 (790)
Q Consensus 20 ~~~~~~-~~~~~~l~~llf~~~s~f~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~~~k~~~~~e~q~~~ 97 (790)
-.-.+| +++++.++++|. |..+. +|....++..-+...+- .+ ++.+-|...+.-+++.=-..-...+.
T Consensus 48 k~~~~~~d~s~~~~~~~~~--D~~~r~~Wd~~~~~~~~le~~~~----~~----~~i~y~~~~~P~P~s~RD~V~~r~~~ 117 (207)
T cd08911 48 KVYGSFDDVTARDFLNVQL--DLEYRKKWDATAVELEVVDEDPE----TG----SEIIYWEMQWPKPFANRDYVYVRRYI 117 (207)
T ss_pred EEEEEEcCCCHHHHHHHHh--CHHHHHHHHhhheeEEEEEccCC----CC----CEEEEEEEECCCCCCCccEEEEEEEE
Confidence 334556 899999999999 56766 56666666655544221 12 34443333344556422222233333
Q ss_pred ee-CCceEEEE-EeeeCCCCCCCCe----eEEEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeeeeeeccccccHH
Q 003874 98 KA-NGQEFAIL-VTVSTPDVPYGNT----FNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLK 171 (790)
Q Consensus 98 ~~-~~~~~~v~-~~~~tpdVP~g~~----F~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K~~Ie~~~~~G~~ 171 (790)
.. ++..|+|. -++.-|++|-..- ......|+|+|-.. -+++.|++...+..+-.|+ +=+.++..-+..|+-
T Consensus 118 ~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~--~~~~~~~~~~~~~~dPgG~-IP~~lvN~~~~~~~~ 194 (207)
T cd08911 118 IDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKS--FDEPGFEFVLTYFDNPGVN-IPSYITSWVAMSGMP 194 (207)
T ss_pred EcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCC--CCCCCeEEEEEEEeCCCCc-cCHHHHHHHHHhhcc
Confidence 22 33444444 4455568886653 33567899994211 1456788887777665554 112233334456666
Q ss_pred HHHHHHHHHHHh
Q 003874 172 ESFEQFANLLAQ 183 (790)
Q Consensus 172 ~~~~~~~~~l~~ 183 (790)
..+..|.+++.+
T Consensus 195 ~~l~~l~~a~~~ 206 (207)
T cd08911 195 DFLERLRNAALK 206 (207)
T ss_pred HHHHHHHHHHhc
Confidence 666777766654
No 184
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=58.27 E-value=32 Score=40.90 Aligned_cols=95 Identities=15% Similarity=0.303 Sum_probs=60.2
Q ss_pred ceecccccccccCceEEEe----ccEEEEEeccC------------CCeEEEEEecccceeeEEccccccccCCCcEEEE
Q 003874 472 DFTCYLKRKMPLQGRLFLS----ARIVGFYANLF------------GNKTKFFFLWEDIEDIQILSPSLATVGSPSLVII 535 (790)
Q Consensus 472 ~f~C~l~~~i~~~Grlyis----~~~icF~s~~~------------g~~t~~~i~~~dI~~I~k~~~~~~~~~~~~i~i~ 535 (790)
.|.|.|+.+ .|.+||+ .-.++|...-. ....-|.||..||.+++|..+ +|=.+ .++
T Consensus 520 ~F~AR~~Gk---kG~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgG----lGWK~-KLv 591 (642)
T PF11696_consen 520 EFPARYKGK---KGHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGG----LGWKG-KLV 591 (642)
T ss_pred eeeeecCCc---cceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhccc----cccee-eEE
Confidence 578888764 4999999 34788876511 124469999999999999874 23211 111
Q ss_pred EEecCCC---C-CCCCceeccCCCceEEEEeeccccchhhHHHHHH
Q 003874 536 LWKGRGL---D-ARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMAL 577 (790)
Q Consensus 536 l~~~~gl---~-~~~~~~~~~~~~~~k~~F~sf~~rd~~~~~i~~~ 577 (790)
.|.-+ . ..+..|.-+..| ..|+++....||+.|+.|.++
T Consensus 592 --VGWa~g~kEv~DGL~I~g~~~g-~~y~lTA~~~RDeLFNRLiAm 634 (642)
T PF11696_consen 592 --VGWALGEKEVVDGLVIVGDEPG-QEYHLTAMPRRDELFNRLIAM 634 (642)
T ss_pred --EeeecCCcccccceEEeccCCC-CEEEEEecchHHHHHHHHHhc
Confidence 12111 1 112233314444 589999999999999877654
No 185
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=57.89 E-value=39 Score=29.12 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=30.1
Q ss_pred ceEEEeccE--EEEEeccCCCeEEEEEecccceeeEEccc
Q 003874 485 GRLFLSARI--VGFYANLFGNKTKFFFLWEDIEDIQILSP 522 (790)
Q Consensus 485 Grlyis~~~--icF~s~~~g~~t~~~i~~~dI~~I~k~~~ 522 (790)
|.||++... +-+-.+--+....+.||+.+|...+..+.
T Consensus 14 G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~ 53 (79)
T PF08567_consen 14 GTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPE 53 (79)
T ss_dssp EEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--T
T ss_pred cEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCC
Confidence 999999999 99887654433379999999999999886
No 186
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=57.76 E-value=37 Score=33.62 Aligned_cols=66 Identities=12% Similarity=0.207 Sum_probs=48.5
Q ss_pred CcEEEEEECCeEe-eeeccc--CCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCccccEEEeceec
Q 003874 324 DPYVVFTCNGKTR-TSSVQL--QTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKH 392 (790)
Q Consensus 324 DPyV~v~l~~~~~-kT~v~~--~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~LG~~~i~L~~l 392 (790)
.-|+++.++++.. +|+... ....-.++|.|.+.+. .-+..|.++||.... ..+..|+++.+|+-..
T Consensus 38 ~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~-~~Pesi~l~i~E~~~--~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 38 RYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQIT-RWPESIKLEIYEKSG--LSDRLLAEVFVPVPGS 106 (168)
T ss_pred eEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEe-cCCCEEEEEEEEccC--ccceEEEEEEeeCCCC
Confidence 4578888877654 444432 3334567799999984 478999999999886 5678999999998764
No 187
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=57.57 E-value=74 Score=32.63 Aligned_cols=149 Identities=11% Similarity=0.058 Sum_probs=84.2
Q ss_pred eEEeeEEecCcccccccccCCCchhHHHHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecC---CCceeeEEEEEEE
Q 003874 19 ILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAAT---KLVKAVKATEQQT 95 (790)
Q Consensus 19 ~~~~~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~---~~~k~~~~~e~q~ 95 (790)
.-+.-++++|++.||.-||..-...-+|......+.-+..... + ++ +.|..... .+++.=-..-...
T Consensus 51 fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~-----~----~~-i~Y~v~~p~~~~pv~~RDfV~~r~ 120 (209)
T cd08906 51 FILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDD-----N----TL-VSYDVAAGAAGGVVSPRDFVNVRR 120 (209)
T ss_pred EEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccC-----C----cE-EEEEEccccccCCCCCCceEEEEE
Confidence 3566788889999986555422334456555555555533331 1 33 34644432 3665333333333
Q ss_pred EEeeCCceEE-EEEeeeCCCCCCC-CeeEEE---EEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeeeeeeccccccH
Q 003874 96 YLKANGQEFA-ILVTVSTPDVPYG-NTFNVQ---LLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGL 170 (790)
Q Consensus 96 ~~~~~~~~~~-v~~~~~tpdVP~g-~~F~v~---~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K~~Ie~~~~~G~ 170 (790)
. ..+++.|+ +..++.-+.+|=- ++-+++ +-|.+.|. ..++++|++.--..++..|+ +=+.+|.+...+.+
T Consensus 121 ~-~~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~---~~~~~~t~vt~~~~~Dp~G~-lP~~lvN~~~~~~~ 195 (209)
T cd08906 121 I-ERRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKS---ASNPSVCTFIWILNTDLKGR-LPRYLIHQSLAATM 195 (209)
T ss_pred E-EecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEEC---CCCCCceEEEEEEecCCCCC-CCHHHHHHHHHHHH
Confidence 3 33456666 4555655556644 444444 56777731 14677888877777777763 22556666667777
Q ss_pred HHHHHHHHHHHH
Q 003874 171 KESFEQFANLLA 182 (790)
Q Consensus 171 ~~~~~~~~~~l~ 182 (790)
-+++..|.+.|.
T Consensus 196 ~~~~~~LR~~~~ 207 (209)
T cd08906 196 FEFASHLRQRIR 207 (209)
T ss_pred HHHHHHHHHHHh
Confidence 777777766654
No 188
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=56.91 E-value=1.5e+02 Score=29.01 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=66.7
Q ss_pred eEEeeEEecCcccccccccCCCchhHH-HHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecCCCce---eeEEEEEE
Q 003874 19 ILLDQLYQVSPCDLNTFLFAPDSQFRK-DLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVK---AVKATEQQ 94 (790)
Q Consensus 19 ~~~~~~~~~~~~~l~~llf~~~s~f~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~~~k---~~~~~e~q 94 (790)
+...-+++.+++++.++|+.+ .+.+ +.....+..-+..- ++ ...-.+...+++ .+++ .+-+....
T Consensus 41 ~k~~~~i~~~~~~v~~~l~d~--~~~~~w~~~~~~~~vl~~~------~~--~~~i~~~~~~~p-~p~~~Rdfv~~~~~~ 109 (193)
T cd00177 41 LKAEGVIPASPEQVFELLMDI--DLRKKWDKNFEEFEVIEEI------DE--HTDIIYYKTKPP-WPVSPRDFVYLRRRR 109 (193)
T ss_pred EEEEEEECCCHHHHHHHHhCC--chhhchhhcceEEEEEEEe------CC--CeEEEEEEeeCC-CccCCccEEEEEEEE
Confidence 556788899999999999963 2222 22222222222211 11 112222222322 2242 22222221
Q ss_pred EEEeeCCceEEEEEeeeCCCCCCC-CeeEEEEE---EEEecCCCCCCCCCccEEEEEEEEEEeee
Q 003874 95 TYLKANGQEFAILVTVSTPDVPYG-NTFNVQLL---YKIIPGPELSSGEDSSHLIISWGIDFHQS 155 (790)
Q Consensus 95 ~~~~~~~~~~~v~~~~~tpdVP~g-~~F~v~~~---y~~~~~~~~~~~~~~~~l~vs~~i~~~~~ 155 (790)
.. .++..+.+..++..|++|-. ++-...+. |+|. ..++++|++.....++..++
T Consensus 110 ~~--~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~-----~~~~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 110 KL--DDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIE-----PLDPGKTKVTYVLQVDPKGS 167 (193)
T ss_pred Ec--CCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEE-----ECCCCCEEEEEEEeeCCCCC
Confidence 11 14566667777777667765 55555543 8999 56789999999999999886
No 189
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=55.53 E-value=2.4e+02 Score=28.73 Aligned_cols=141 Identities=16% Similarity=0.115 Sum_probs=73.0
Q ss_pred cccC-CCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEeccc--ccCCCceeceEEEEeec-CCC
Q 003874 624 AELP-ISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRH--VSIFGGEVTCTQQKSPL-ASG 699 (790)
Q Consensus 624 ~~~p-~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~~--i~~~~~~vt~~Q~~~~~-~~~ 699 (790)
.+|+ ++++.|++++.|.++..++....... +.. ...+ .+.+.|.++.| +++ -.....+..... .++
T Consensus 55 ~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~-~~~-----~~~~--~~i~y~~~k~PwPvs~--RD~V~~r~~~~~~~~~ 124 (207)
T cd08910 55 GVLEDCSPSLLADVYMDLEYRKQWDQYVKEL-YEK-----ECDG--ETVIYWEVKYPFPLSN--RDYVYIRQRRDLDVEG 124 (207)
T ss_pred EEEcCCCHHHHHHHHhCHHHHHHHHHHHHhh-eee-----cCCC--CEEEEEEEEcCCCCCC--ceEEEEEEeccccCCC
Confidence 4566 89999999887877765555543211 111 1112 33333333222 333 223222222211 223
Q ss_pred C-cEEE-EEEEecCCCCCCCceE----EEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHH
Q 003874 700 E-GWIV-NEVMSLHDVPFDDHFR----VHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMI 773 (790)
Q Consensus 700 ~-~~vv-~~~~t~~dVPygd~F~----v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~g~~~~~k~~~ 773 (790)
. .++| ......|.+|-.+-|. ....|.|++.+ +++|++...+..+--++ .=+.++..-+.++.-+.++.|-
T Consensus 125 ~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~--~~~t~i~~~~~~DPgG~-IP~wlvN~~~~~~~~~~l~~l~ 201 (207)
T cd08910 125 RKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDG--KKGSKVFMYYFDNPGGM-IPSWLINWAAKNGVPNFLKDMQ 201 (207)
T ss_pred CeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCC--CCceEEEEEEEeCCCCc-chHHHHHHHHHHhhHHHHHHHH
Confidence 2 2343 3444457888765544 55677888665 67899999888886433 2233444444444445555554
Q ss_pred HHHH
Q 003874 774 ELVE 777 (790)
Q Consensus 774 ~~~~ 777 (790)
+.+.
T Consensus 202 ka~~ 205 (207)
T cd08910 202 KACQ 205 (207)
T ss_pred HHHh
Confidence 4443
No 190
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=54.07 E-value=2.6e+02 Score=28.63 Aligned_cols=129 Identities=10% Similarity=0.039 Sum_probs=71.6
Q ss_pred CCCCCCCceEEeeEEecCcccccccccCCCchhHHHHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecCCCc--eee
Q 003874 11 MPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLV--KAV 88 (790)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~~~--k~~ 88 (790)
.+++..| ++..-++++++++++++|--. ...-+|....+...=++. .+ ..++.|.|+.+..-++ +.=
T Consensus 40 ~~~~~~~-~~ge~~v~as~~~v~~ll~D~-~~r~~Wd~~~~~~~vl~~----~~-----~d~~i~y~~~~~Pwp~~~~~R 108 (205)
T cd08874 40 FNGTYHG-FLGAGVIKAPLATVWKAVKDP-RTRFLYDTMIKTARIHKT----FT-----EDICLVYLVHETPLCLLKQPR 108 (205)
T ss_pred CCCCcce-EEEEEEEcCCHHHHHHHHhCc-chhhhhHHhhhheeeeee----cC-----CCeEEEEEEecCCCCCCCCCC
Confidence 3444444 667888999999999999632 234455554333332221 11 2245555544433222 433
Q ss_pred EEEEEEEEEeeCCceEEEEE-eeeCCCCC-CC-Ce---eEEEEEEEEecCCCCCCCCCccEEEEEEEEEEe
Q 003874 89 KATEQQTYLKANGQEFAILV-TVSTPDVP-YG-NT---FNVQLLYKIIPGPELSSGEDSSHLIISWGIDFH 153 (790)
Q Consensus 89 ~~~e~q~~~~~~~~~~~v~~-~~~tpdVP-~g-~~---F~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~ 153 (790)
-..-.++..+ +++.++|.. ++.-|.+| -+ ++ +.....|.|.|.|+ .++++|+|.-..+++=.
T Consensus 109 DfV~l~~~~~-~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~--~g~~~t~vty~~q~DPg 176 (205)
T cd08874 109 DFCCLQVEAK-EGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTV--EGNQYTRVIYIAQVALC 176 (205)
T ss_pred eEEEEEEEEE-CCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECcc--CCCCcEEEEEEEEECCC
Confidence 3333334444 445544544 44445777 44 44 56677899994211 16679999888888766
No 191
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=52.73 E-value=1.9e+02 Score=26.70 Aligned_cols=110 Identities=7% Similarity=0.058 Sum_probs=56.3
Q ss_pred cccCCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEecccccCCCceeceEEEEeecCC-CCcE
Q 003874 624 AELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLAS-GEGW 702 (790)
Q Consensus 624 ~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~~i~~~~~~vt~~Q~~~~~~~-~~~~ 702 (790)
.+++.+++.+|+++.|-+-+.+++.......+.. . +...+..... +++.+... .......... ...+
T Consensus 5 ~~i~ap~~~V~~~l~D~~~~p~~~p~~~~~~~~~-----~--~~~~~~~~~~----~~~~g~~~-~~~~~~~~~~~~~~i 72 (142)
T cd08861 5 VTVAAPAEDVYDLLADAERWPEFLPTVHVERLEL-----D--GGVERLRMWA----TAFDGSVH-TWTSRRVLDPEGRRI 72 (142)
T ss_pred EEEcCCHHHHHHHHHhHHhhhccCCCceEEEEEE-----c--CCEEEEEEEE----EcCCCcEE-EEEEEEEEcCCCCEE
Confidence 4678999999998877665555655311111111 1 1122222222 33222222 2221111222 2222
Q ss_pred EEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccc
Q 003874 703 IVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTK 752 (790)
Q Consensus 703 vv~~~~t~~dVPygd~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~ 752 (790)
..... . +-++....+.+|.++..+ +++|+|.....+++.....
T Consensus 73 ~~~~~-~----~~~~~~~~~g~w~~~~~~--~~~t~Vt~~~~~~~~~~~~ 115 (142)
T cd08861 73 VFRQE-E----PPPPVASMSGEWRFEPLG--GGGTRVTLRHDFTLGIDSP 115 (142)
T ss_pred EEEEe-e----CCCChhhheeEEEEEECC--CCcEEEEEEEEEEECCCCc
Confidence 22221 1 123445678899999987 4689888888888775443
No 192
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=52.14 E-value=1.6e+02 Score=29.41 Aligned_cols=81 Identities=10% Similarity=0.105 Sum_probs=56.2
Q ss_pred CCceEEEEEeeeCCCCCC--CCeeEEE---EEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeeeeeeccccccHHHHH
Q 003874 100 NGQEFAILVTVSTPDVPY--GNTFNVQ---LLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESF 174 (790)
Q Consensus 100 ~~~~~~v~~~~~tpdVP~--g~~F~v~---~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K~~Ie~~~~~G~~~~~ 174 (790)
++..+++..++..|+.|- .++-++. ..|+|. +.+++.|++..-..++..|+. -+.++-.-+.+++-+.+
T Consensus 120 ~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~-----~~~~~~~~vt~~~~~D~~G~i-P~~~~n~~~~~~~~~~~ 193 (206)
T PF01852_consen 120 DGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIR-----PLGDGRTRVTYVSQVDPKGWI-PSWLVNMVVKSQPPNFL 193 (206)
T ss_dssp TSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEE-----EETTCEEEEEEEEEEESSSSS-HHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeeeccccccccccCcceeeeeeEeEEEE-----EccCCCceEEEEEEECCCCCC-hHHHHHHHHHHhHHHHH
Confidence 344555667888999885 5665554 458999 677788999999999988863 12223333346777777
Q ss_pred HHHHHHHHhhcc
Q 003874 175 EQFANLLAQNLK 186 (790)
Q Consensus 175 ~~~~~~l~~~~~ 186 (790)
+.+.+.|+++.+
T Consensus 194 ~~~~~~~~~~~~ 205 (206)
T PF01852_consen 194 KNLRKALKKQKK 205 (206)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHhcc
Confidence 888888887654
No 193
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=51.94 E-value=2.4e+02 Score=27.48 Aligned_cols=121 Identities=13% Similarity=0.111 Sum_probs=60.8
Q ss_pred ccccCCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEecccccCCCceeceEEEEeecCCCCcE
Q 003874 623 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGW 702 (790)
Q Consensus 623 ~~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~~i~~~~~~vt~~Q~~~~~~~~~~~ 702 (790)
..+++++++.+++++.+.+....+-.. +.+..+-.. ...+.......|...-|+++ -............++..+
T Consensus 44 ~~~i~~~~~~v~~~l~d~~~~~~w~~~--~~~~~vl~~--~~~~~~i~~~~~~~p~p~~~--Rdfv~~~~~~~~~~~~~~ 117 (193)
T cd00177 44 EGVIPASPEQVFELLMDIDLRKKWDKN--FEEFEVIEE--IDEHTDIIYYKTKPPWPVSP--RDFVYLRRRRKLDDGTYV 117 (193)
T ss_pred EEEECCCHHHHHHHHhCCchhhchhhc--ceEEEEEEE--eCCCeEEEEEEeeCCCccCC--ccEEEEEEEEEcCCCeEE
Confidence 357799999999955454433332221 111111111 11122222223331222222 122222222222334444
Q ss_pred EEEEEEecCCCCCC-CceEEEEE---EEEEecCCCCCccEEEEEEEEEEeccc
Q 003874 703 IVNEVMSLHDVPFD-DHFRVHFR---YEIEKSPLAHNACKCAIYIGISWLKST 751 (790)
Q Consensus 703 vv~~~~t~~dVPyg-d~F~v~~r---y~i~~~~~~~~~c~l~V~~~V~w~Kst 751 (790)
++......+..|-. ++-+.+.. |.|+..+ +++|++.....++..++.
T Consensus 118 ~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~--~~~~~vt~~~~~D~~g~i 168 (193)
T cd00177 118 IVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLD--PGKTKVTYVLQVDPKGSI 168 (193)
T ss_pred EEEeecCCCCCCCCCCcEEEEEEccEEEEEECC--CCCEEEEEEEeeCCCCCc
Confidence 55433332345655 66666654 8888885 799999999999988763
No 194
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=51.21 E-value=1.6e+02 Score=27.34 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=34.3
Q ss_pred EEEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeeeeee--ccccccHHHHHHHHHHHH
Q 003874 122 NVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIE--GGARQGLKESFEQFANLL 181 (790)
Q Consensus 122 ~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K~~Ie--~~~~~G~~~~~~~~~~~l 181 (790)
....+|-|+ ..+.+.||+.+. ..|.+.......+. .+...|+++.+++|..+|
T Consensus 89 ~~~~~~~l~-----~~~~g~T~vt~~--~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 89 GHRWRWELE-----PIGPGRTRVTET--YDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred ceeEEEEEE-----ECCCCcEEEEEE--EeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 355677888 566678887755 46777654322222 556788888888777654
No 195
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=49.70 E-value=23 Score=43.38 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=74.2
Q ss_pred CCcEEEEEECCeE-eeeecccCC-CCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCccccEEEeceecCCCCceeE
Q 003874 323 SDPYVVFTCNGKT-RTSSVQLQT-CDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADM 400 (790)
Q Consensus 323 sDPyV~v~l~~~~-~kT~v~~~t-lnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~LG~~~i~L~~l~~~~~~~~ 400 (790)
.++|+.+.+.... .+|....+. .+|.|.+.|.... ......+.+.+-+.+. .+....+|.+.+++..+..+.....
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~-~h~~g~v~~~~~~~~~-~G~s~~w~~v~~s~~~~~~~~~~~~ 215 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGF-AHKAGYVIFRVKGARV-PGWSKRWGRVKISFLQYCSGHRIGG 215 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccc-cccccEEEEeecCCcc-ccceeEEEEeccchhhhhccccccc
Confidence 6999999986544 367777666 7899999887765 5566788888888776 5656789999999999888888888
Q ss_pred EEEccccccCcC--CceeEEEEEEecCC
Q 003874 401 WVSLEGKLAQSA--QSKVHLRIFLENNN 426 (790)
Q Consensus 401 w~~L~~k~~~~~--~G~l~L~i~l~~~~ 426 (790)
|+++....+... ...+++++.+....
T Consensus 216 ~~~Il~~d~~~~~~~~~~~~~~~~~~~~ 243 (887)
T KOG1329|consen 216 WFPILDNDGKPHQKGSNESLRLGFTPME 243 (887)
T ss_pred eeeeeccCCccccCCcccceEEeeEeec
Confidence 999865443333 34556666544433
No 196
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=49.59 E-value=1.1e+02 Score=31.45 Aligned_cols=150 Identities=19% Similarity=0.207 Sum_probs=78.4
Q ss_pred CCceE-EeeEEecCcccccccccCCCchhHHHHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecCCCceeeEE--EE
Q 003874 16 QGGIL-LDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVKAVKA--TE 92 (790)
Q Consensus 16 ~g~~~-~~~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~~~k~~~~--~e 92 (790)
.|.++ +.-+++.+++++|++||-+... .+|=....++.-++.-+ ++ + .++|.+..+.++..+.. -.
T Consensus 44 ~gkl~k~egvi~~~~e~v~~~l~~~e~r-~~Wd~~~~~~~iie~Id-----~~----T-~I~~~~~~~~~~~~vspRDfV 112 (204)
T cd08904 44 HGNLYRVEGIIPESPAKLIQFMYQPEHR-IKWDKSLQVYKMLQRID-----SD----T-FICHTITQSFAMGSISPRDFV 112 (204)
T ss_pred CceEEEEEEEecCCHHHHHHHHhccchh-hhhcccccceeeEEEeC-----CC----c-EEEEEecccccCCcccCceEE
Confidence 44443 4568899999999999853211 11111112222222111 11 2 47777765533211111 11
Q ss_pred EEEE-EeeCCceEEE-EEeeeCCCCC-CCCeeE---EEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeeeeeeccc
Q 003874 93 QQTY-LKANGQEFAI-LVTVSTPDVP-YGNTFN---VQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGA 166 (790)
Q Consensus 93 ~q~~-~~~~~~~~~v-~~~~~tpdVP-~g~~F~---v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K~~Ie~~~ 166 (790)
...+ .+.++..|++ ..++.=|..| --++.+ --+=|.|.|-|+ .+++|+|....+++.+|. +=+.+|++.-
T Consensus 113 ~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~---~p~~t~l~~~~~~DlkG~-lP~~vv~~~~ 188 (204)
T cd08904 113 DLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPE---NPAYSKLVMFVQPELRGN-LSRSVIEKTM 188 (204)
T ss_pred EEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCC---CCCceEEEEEEEeCCCCC-CCHHHHHHHh
Confidence 2212 2336666775 4555555554 344443 445689995332 335788888888776632 2367788766
Q ss_pred cccHHHHHHHHHHH
Q 003874 167 RQGLKESFEQFANL 180 (790)
Q Consensus 167 ~~G~~~~~~~~~~~ 180 (790)
-+.|-+++..+.+.
T Consensus 189 ~~~~~~f~~~~~~~ 202 (204)
T cd08904 189 PTNLVNLILDAKDG 202 (204)
T ss_pred HHHHHHHHHHHHHh
Confidence 66775555555443
No 197
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=47.06 E-value=1.7e+02 Score=27.67 Aligned_cols=139 Identities=13% Similarity=0.130 Sum_probs=70.1
Q ss_pred eEEeeEEecCcccccccccCCCchhHHHHHHHhCccceeeCcCcccCCCCceeEEEEEEEee-cCCCceeeEEEEEEEEE
Q 003874 19 ILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKA-ATKLVKAVKATEQQTYL 97 (790)
Q Consensus 19 ~~~~~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~-~~~~~k~~~~~e~q~~~ 97 (790)
+.+.++|++|+++||+.+-.| ..+-+++....-.......+|+.+ | .+.|... ..... ...+-+++
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdp-e~l~~W~~p~~~~~~~~~~d~r~G--G------~~~~~~~~~~g~~----~~~~g~~~ 68 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDP-ELVKRWWGPRGLTMTVCECDIRVG--G------SYRYVHRAPDGEE----MGFHGVYH 68 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCH-HHHhhccCCCCCcceEEEEeccCC--C------EEEEEEECCCCCE----ecceEEEE
Confidence 578999999999999999864 244466543321112223344332 3 1333321 11110 01122455
Q ss_pred eeCCceEEEEEeeeCCCCCCCCeeEEEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeeeeeeccccccHHHHHHHH
Q 003874 98 KANGQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQF 177 (790)
Q Consensus 98 ~~~~~~~~v~~~~~tpdVP~g~~F~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K~~Ie~~~~~G~~~~~~~~ 177 (790)
..+.....+-.-.. .+-| +. ...+.+.|. .. +..|||.+... |....-....+..|..+|-...+++|
T Consensus 69 ei~p~~~l~~t~~~-~~~~-~~--~s~v~~~l~-----~~-~~gT~l~l~~~--~~~~~~~~~~~~~~~~~Gw~~~l~~L 136 (142)
T cd07826 69 EVTPPERIVQTEEF-EGLP-DG--VALETVTFT-----EL-GGRTRLTATSR--YPSKEARDGVLASGMEEGMEESYDRL 136 (142)
T ss_pred EEcCCCEEEEEeEe-cCCC-CC--ceEEEEEEE-----EC-CCCEEEEEEEE--eCCHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55433333222111 2223 22 345577888 33 36799998633 43222222234445667777777777
Q ss_pred HHHHH
Q 003874 178 ANLLA 182 (790)
Q Consensus 178 ~~~l~ 182 (790)
...|+
T Consensus 137 ~~~l~ 141 (142)
T cd07826 137 DELLA 141 (142)
T ss_pred HHHHh
Confidence 66664
No 198
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.34 E-value=8.1 Score=45.79 Aligned_cols=97 Identities=11% Similarity=0.106 Sum_probs=64.5
Q ss_pred CCCcEEEEEECCe-EeeeecccCCCCCeEeeEEEEEeecCCCCeEEEEEEeeCCCCCCCCccccEEEeceecC-CCCcee
Q 003874 322 LSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHT-STELAD 399 (790)
Q Consensus 322 ~sDPyV~v~l~~~-~~kT~v~~~tlnP~WnE~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~LG~~~i~L~~l~-~~~~~~ 399 (790)
..+||+-+.+.-. ...+.+.+.+..|.|+++|..++. ....+.|.|+.... ...+++..++.+-.+++. ......
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~--~~~~~~i~v~~~~~-~~~~~~~a~~~~~~e~~k~~~~~~~ 103 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV--AGGAKNIIVLLKSP-DPKALSEAQLSLQEESQKLLALEQR 103 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeee--cCCceEEEEEecCC-cchhhHHHhHHHHHHHHHHHhhhhh
Confidence 3578888777533 335556788999999999999963 34567777887654 455555555555555443 233456
Q ss_pred EEEEccccccCcCCceeEEEEEEecCCC
Q 003874 400 MWVSLEGKLAQSAQSKVHLRIFLENNNG 427 (790)
Q Consensus 400 ~w~~L~~k~~~~~~G~l~L~i~l~~~~~ 427 (790)
.|..++. .|+++..+.+.++..
T Consensus 104 ~w~~~~~------~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 104 LWVLIEE------LGTLLKPAALTGTLE 125 (694)
T ss_pred hcccccc------ccceeeeecccCcCC
Confidence 7988765 478888887766544
No 199
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=45.92 E-value=1.9e+02 Score=29.48 Aligned_cols=146 Identities=12% Similarity=0.093 Sum_probs=81.1
Q ss_pred eEEeeEEe-cCcccccccccCCCchhHH-HHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecCCCceeeEEEEEEEE
Q 003874 19 ILLDQLYQ-VSPCDLNTFLFAPDSQFRK-DLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTY 96 (790)
Q Consensus 19 ~~~~~~~~-~~~~~l~~llf~~~s~f~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~~~k~~~~~e~q~~ 96 (790)
.-+-.+|. ++++.++++|. |..+.+ |.....+. +.. .+++ .+.+-|...+.-|++.=-..-.+..
T Consensus 51 ~k~~~~~~~~s~~~~~~~l~--D~~~r~~Wd~~~~~~--~~~-----~~~~----~~i~y~~~k~PwPvs~RD~V~~r~~ 117 (207)
T cd08910 51 YKVFGVLEDCSPSLLADVYM--DLEYRKQWDQYVKEL--YEK-----ECDG----ETVIYWEVKYPFPLSNRDYVYIRQR 117 (207)
T ss_pred EEEEEEEcCCCHHHHHHHHh--CHHHHHHHHHHHHhh--eee-----cCCC----CEEEEEEEEcCCCCCCceEEEEEEe
Confidence 44466887 89999999998 556553 44433331 111 1122 3433333334455632222212222
Q ss_pred Eee--CCc-eEE-EEEeeeCCCCCCCCeeE----EEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeeeeeeccccc
Q 003874 97 LKA--NGQ-EFA-ILVTVSTPDVPYGNTFN----VQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQ 168 (790)
Q Consensus 97 ~~~--~~~-~~~-v~~~~~tpdVP~g~~F~----v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K~~Ie~~~~~ 168 (790)
+.. ++. .|+ +.-++.-|++|-.+-|. ....|+|+ +.+++.|++...+..+-.|+- =+.++-.-+..
T Consensus 118 ~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~-----p~~~~~t~i~~~~~~DPgG~I-P~wlvN~~~~~ 191 (207)
T cd08910 118 RDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIE-----SDGKKGSKVFMYYFDNPGGMI-PSWLINWAAKN 191 (207)
T ss_pred ccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEE-----eCCCCceEEEEEEEeCCCCcc-hHHHHHHHHHH
Confidence 222 233 344 34566678888765443 55677888 556788999999888876551 12233344456
Q ss_pred cHHHHHHHHHHHHHh
Q 003874 169 GLKESFEQFANLLAQ 183 (790)
Q Consensus 169 G~~~~~~~~~~~l~~ 183 (790)
++-.++..|.++..+
T Consensus 192 ~~~~~l~~l~ka~~~ 206 (207)
T cd08910 192 GVPNFLKDMQKACQN 206 (207)
T ss_pred hhHHHHHHHHHHHhc
Confidence 776777776666554
No 200
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=45.86 E-value=1.7e+02 Score=27.67 Aligned_cols=30 Identities=7% Similarity=0.048 Sum_probs=23.7
Q ss_pred eEEeeEEecCcccccccccCCCchhHHHHHH
Q 003874 19 ILLDQLYQVSPCDLNTFLFAPDSQFRKDLAE 49 (790)
Q Consensus 19 ~~~~~~~~~~~~~l~~llf~~~s~f~~~~~~ 49 (790)
+.+..+|++|++++|+.+=.| ..+-+|+..
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~p-e~~~~W~~p 31 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEP-ELLKQWFCP 31 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCH-HHHhccCCC
Confidence 678999999999999999864 345566653
No 201
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=44.22 E-value=48 Score=33.01 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=35.7
Q ss_pred EeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEEeeCCCC----CCCCccccEEEece
Q 003874 335 TRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGPF----DQATSLGHAEINFL 390 (790)
Q Consensus 335 ~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~D~d~~~----~~dd~LG~~~i~L~ 390 (790)
.++|-+..+ .+|.|+++|.+.+..+ +...|.|++++....- .....+|-+.+||-
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 345545555 8999999999998544 3568999999866310 12345566555554
No 202
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=43.96 E-value=28 Score=31.79 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=41.9
Q ss_pred ccccceecccccc-cccCceEEEeccEEEEEecc----C-CC---------eEEEEEecccceeeEEccccccccCCCcE
Q 003874 468 FLIKDFTCYLKRK-MPLQGRLFLSARIVGFYANL----F-GN---------KTKFFFLWEDIEDIQILSPSLATVGSPSL 532 (790)
Q Consensus 468 ~l~~~f~C~l~~~-i~~~Grlyis~~~icF~s~~----~-g~---------~t~~~i~~~dI~~I~k~~~~~~~~~~~~i 532 (790)
+++-+..|.+-.- .-..|++-+|...++|..+. + +. .....+++++|.+|.+..- -+-..++
T Consensus 2 ~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRy---lLr~~al 78 (108)
T cd01201 2 PVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRY---LLQNTAL 78 (108)
T ss_pred CeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhh---hcccceE
Confidence 3455566776442 23459999999999999641 1 11 1234789999998887652 2222467
Q ss_pred EEEE
Q 003874 533 VIIL 536 (790)
Q Consensus 533 ~i~l 536 (790)
.|++
T Consensus 79 EiF~ 82 (108)
T cd01201 79 ELFL 82 (108)
T ss_pred EEEE
Confidence 7765
No 203
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=43.69 E-value=85 Score=28.70 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=43.3
Q ss_pred CeEeeeecccCCCCCeEeeEEEEEeecCC-------CCeEEEEEEeeCCCCCCCCccccEEEeceecCCCC--ceeEEEE
Q 003874 333 GKTRTSSVQLQTCDPQWHDILEFDAMEEP-------PSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTE--LADMWVS 403 (790)
Q Consensus 333 ~~~~kT~v~~~tlnP~WnE~f~f~v~~~~-------~~~L~v~V~D~d~~~~~dd~LG~~~i~L~~l~~~~--~~~~w~~ 403 (790)
-+...|.++. ..+|.+|-+-.|.+..+. ...+.|+++..-+ .....+|.+++++..+.... ....-..
T Consensus 10 fEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g--~d~~tla~~~i~l~~ll~~~~~~i~~~~~ 86 (107)
T PF11618_consen 10 FETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG--SDFETLAAGQISLRPLLESNGERIHGSAT 86 (107)
T ss_dssp ---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S--S-EEEEEEEEE--SHHHH--S--EEEEEE
T ss_pred eeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc--CCeEEEEEEEeechhhhcCCCceEEEEEE
Confidence 3455676765 789999988888875442 4578999988665 34678999999999874222 3444555
Q ss_pred ccccccCcCCceeEEEEEE
Q 003874 404 LEGKLAQSAQSKVHLRIFL 422 (790)
Q Consensus 404 L~~k~~~~~~G~l~L~i~l 422 (790)
|-+..+. .-|.|...+.|
T Consensus 87 l~g~~~~-~~g~l~y~~rl 104 (107)
T PF11618_consen 87 LVGVSGE-DFGTLEYWIRL 104 (107)
T ss_dssp E-BSSS--TSEEEEEEEEE
T ss_pred EeccCCC-eEEEEEEEEEe
Confidence 6554433 45666665544
No 204
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=43.20 E-value=3.2e+02 Score=26.57 Aligned_cols=71 Identities=21% Similarity=0.145 Sum_probs=55.7
Q ss_pred CCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecc-cchhhhhhhhhHHhHHHHHHHHHHHHHHHHH
Q 003874 711 HDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKS-TKFQQRITQNITEKFTHRLKEMIELVEREIL 781 (790)
Q Consensus 711 ~dVPygd~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w~Ks-t~~K~~Iek~~~~g~~~~~k~~~~~~~k~v~ 781 (790)
..+=+.+.+.|+.+....+.+.+++.|.+.-.+.|.-..+ ..|.+.||+-+.+..++.++.=.+.++.-+.
T Consensus 81 ~Nls~~~~~~v~E~~~Y~~~p~np~~T~~~q~a~i~~~~~~~~~~~~iE~~~~~~f~~na~kgr~~~e~vi~ 152 (157)
T PF04707_consen 81 RNLSFSSFLSVEETCVYKPHPDNPNWTLFKQEATISIKGSFSGFSSRIEKFSVSRFKSNAKKGREGMEWVIK 152 (157)
T ss_pred EEcccCceeEEEEEEEEEECCCCCCcceEEEEEEEEEeCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999987789999999999995542 4489999999888777776655555544443
No 205
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=42.04 E-value=4e+02 Score=27.26 Aligned_cols=143 Identities=7% Similarity=0.028 Sum_probs=72.7
Q ss_pred ccccCCCHHHHhh-hccCchHHHHHHHHcCC-cceeecCcccCCCCceEEEEEEEecccc--cCCC-ceeceEEEEeecC
Q 003874 623 NAELPISVKALME-MFDGGKLEHQVMEKSGC-HNYVTTPWDLVKPGVCERHLSYRFNRHV--SIFG-GEVTCTQQKSPLA 697 (790)
Q Consensus 623 ~~~~p~s~~~lf~-lF~~~~f~~~~~~~~g~-~d~~~~~W~~~~~~~~~R~~sY~~n~~i--~~~~-~~vt~~Q~~~~~~ 697 (790)
..++++|++.+|. |+.|.+...++...... .-+... +... .+.|.++.|- +|.. -.+.... +.. .
T Consensus 54 ~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~-------~~~~-~i~Y~v~~p~~~~pv~~RDfV~~r-~~~-~ 123 (209)
T cd08906 54 KAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRV-------DDNT-LVSYDVAAGAAGGVVSPRDFVNVR-RIE-R 123 (209)
T ss_pred EEEEcCCHHHHHHHHHhChhhccccCccchhhhheeec-------cCCc-EEEEEEccccccCCCCCCceEEEE-EEE-e
Confidence 4577999999996 88766543332221110 011111 1122 2456544432 2221 2232222 222 3
Q ss_pred CCCcEE-EEEEEecCCCCC-CCceEEE---EEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHH
Q 003874 698 SGEGWI-VNEVMSLHDVPF-DDHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEM 772 (790)
Q Consensus 698 ~~~~~v-v~~~~t~~dVPy-gd~F~v~---~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~g~~~~~k~~ 772 (790)
++++|+ +......+.+|= .++-+++ +-|.+...+.++++|++.-...++..+ ..=+..|.+...+.+-++++.|
T Consensus 124 ~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP~~lvN~~~~~~~~~~~~~L 202 (209)
T cd08906 124 RRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKG-RLPRYLIHQSLAATMFEFASHL 202 (209)
T ss_pred cCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 345554 444445455554 4554555 456666643347899998888888776 2235566666555555555555
Q ss_pred HHHH
Q 003874 773 IELV 776 (790)
Q Consensus 773 ~~~~ 776 (790)
-+.+
T Consensus 203 R~~~ 206 (209)
T cd08906 203 RQRI 206 (209)
T ss_pred HHHH
Confidence 4443
No 206
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=41.22 E-value=1.3e+02 Score=30.86 Aligned_cols=119 Identities=17% Similarity=0.104 Sum_probs=72.0
Q ss_pred eEEeeEEecCcccccccccCCCchhHHHHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecCCCceeeEEEEEEEEE-
Q 003874 19 ILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYL- 97 (790)
Q Consensus 19 ~~~~~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~~~k~~~~~e~q~~~- 97 (790)
.-+-..+++++.++..+|-- . .-+|.........+...+ ..+..+-|......|++.--........
T Consensus 54 ~r~~~~i~a~~~~vl~~lld--~-~~~Wd~~~~e~~vIe~ld---------~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~ 121 (204)
T cd08908 54 WRTTIEVPAAPEEILKRLLK--E-QHLWDVDLLDSKVIEILD---------SQTEIYQYVQNSMAPHPARDYVVLRTWRT 121 (204)
T ss_pred EEEEEEeCCCHHHHHHHHHh--h-HHHHHHHhhheEeeEecC---------CCceEEEEEccCCCCCCCcEEEEEEEEEE
Confidence 44456667777777776653 1 344555555544443332 2245555554454666544444443333
Q ss_pred eeCCceEEEEEe-eeCCCCCCCCeeE---EEEEEEEecCCCCCCCCCccEEEEEEEEEEeee
Q 003874 98 KANGQEFAILVT-VSTPDVPYGNTFN---VQLLYKIIPGPELSSGEDSSHLIISWGIDFHQS 155 (790)
Q Consensus 98 ~~~~~~~~v~~~-~~tpdVP~g~~F~---v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~ 155 (790)
..+...|+|... +.-+.+|=. .-. +..+|.|+ +.++++|+|.--++++..|+
T Consensus 122 ~~~~g~~~I~~~Sv~h~~~P~~-~VR~~~~~~~w~i~-----P~g~g~t~vtyi~~~DPgG~ 177 (204)
T cd08908 122 NLPKGACALLATSVDHDRAPVA-GVRVNVLLSRYLIE-----PCGSGKSKLTYMCRIDLRGH 177 (204)
T ss_pred eCCCCeEEEEEeecCcccCCcC-ceEEEEEeeEEEEE-----ECCCCcEEEEEEEEeCCCCC
Confidence 334445666555 777779944 333 46889999 67779999999999998887
No 207
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=40.68 E-value=3.8e+02 Score=26.69 Aligned_cols=146 Identities=9% Similarity=0.021 Sum_probs=75.5
Q ss_pred cccCCCHHHHhh-hccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEecccccCCCc-eeceEEEEeecCCCCc
Q 003874 624 AELPISVKALME-MFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGG-EVTCTQQKSPLASGEG 701 (790)
Q Consensus 624 ~~~p~s~~~lf~-lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~~i~~~~~-~vt~~Q~~~~~~~~~~ 701 (790)
..++.++..++. ++.|.+...++........+- ... +.+ .+-+.|..+.|.+|..+ ...-..+... ..+..
T Consensus 51 ~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~i-e~~---~~~--~~i~~~~~~~~~~p~~~RDfv~~r~~~~-~~~~~ 123 (206)
T smart00234 51 GVVPMVCADLVEELMDDLRYRPEWDKNVAKAETL-EVI---DNG--TVIYHYVSKFVAGPVSPRDFVFVRYWRE-LVDGS 123 (206)
T ss_pred EEEecChHHHHHHHHhcccchhhCchhcccEEEE-EEE---CCC--CeEEEEEEecccCcCCCCeEEEEEEEEE-cCCCc
Confidence 456777777554 887776655555543322111 111 112 22222332334323222 2222222222 23444
Q ss_pred EEE-EEEEecCCCCC-CCce---EEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHH
Q 003874 702 WIV-NEVMSLHDVPF-DDHF---RVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELV 776 (790)
Q Consensus 702 ~vv-~~~~t~~dVPy-gd~F---~v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~g~~~~~k~~~~~~ 776 (790)
++| ......+..|- ..+- .....|+|++.+ ++.|++.....++..++ .=+..+..-+....-..++.+...+
T Consensus 124 ~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~--~~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~~~~~~~ 200 (206)
T smart00234 124 YAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLG--NGPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAKTWVATL 200 (206)
T ss_pred EEEEEEECCCCCCCCCCCceEEEEeceEEEEEECC--CCCeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHHHHHHHH
Confidence 544 43444466663 4444 346789999987 56799999999999876 2244444444444455566665555
Q ss_pred HHH
Q 003874 777 ERE 779 (790)
Q Consensus 777 ~k~ 779 (790)
++.
T Consensus 201 ~~~ 203 (206)
T smart00234 201 QKH 203 (206)
T ss_pred HHH
Confidence 543
No 208
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=39.65 E-value=3.5e+02 Score=27.25 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=32.9
Q ss_pred cEEEE-EEEec-CCCCCCCceE---EEEEEEEEecCCCCCccEEEEEEEEEEecc
Q 003874 701 GWIVN-EVMSL-HDVPFDDHFR---VHFRYEIEKSPLAHNACKCAIYIGISWLKS 750 (790)
Q Consensus 701 ~~vv~-~~~t~-~dVPygd~F~---v~~ry~i~~~~~~~~~c~l~V~~~V~w~Ks 750 (790)
.++|. ..... ..+|- ++-+ ....|.|++.+ +++|+|.-.+.++..++
T Consensus 119 ~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~p~~--~~~t~vty~~~~Dp~G~ 170 (197)
T cd08869 119 ACVLVETSVEHTEPVPL-GGVRAVVLASRYLIEPCG--SGKSRVTHICRVDLRGR 170 (197)
T ss_pred cEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEEECC--CCCeEEEEEEEECCCCC
Confidence 45544 33322 25665 6544 45789999987 68999999999999877
No 209
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=39.26 E-value=3e+02 Score=27.11 Aligned_cols=77 Identities=8% Similarity=0.149 Sum_probs=49.7
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEE----------CCe-EeeeecccC-----CCCCeEeeEEEEEeecCCC---CeEEE
Q 003874 307 ALVEGVNLASSEMTGLSDPYVVFTC----------NGK-TRTSSVQLQ-----TCDPQWHDILEFDAMEEPP---SVLDV 367 (790)
Q Consensus 307 ~vl~A~~L~~~d~~g~sDPyV~v~l----------~~~-~~kT~v~~~-----tlnP~WnE~f~f~v~~~~~---~~L~v 367 (790)
.|..|.+.. .++-||+..+ +.. ...|.+... +..-.||.-|++....... ..|.|
T Consensus 7 ~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 456666543 2466887765 122 455555532 3456799877776544322 48999
Q ss_pred EEEeeCCCCCCCCccccEEEece
Q 003874 368 EVFDFDGPFDQATSLGHAEINFL 390 (790)
Q Consensus 368 ~V~D~d~~~~~dd~LG~~~i~L~ 390 (790)
+||..|. ++++.+.|-..+.|.
T Consensus 81 ~V~~~D~-~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 81 QVYSLDS-WGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEcc-cCCeEEeEEeEEEeC
Confidence 9999999 899888876665553
No 210
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=39.04 E-value=1e+02 Score=24.73 Aligned_cols=35 Identities=9% Similarity=0.181 Sum_probs=29.4
Q ss_pred CceEEEeccEEEEEeccCCCeEEEEEecccceeeEE
Q 003874 484 QGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQI 519 (790)
Q Consensus 484 ~Grlyis~~~icF~s~~~g~~t~~~i~~~dI~~I~k 519 (790)
-|++++|.-.+.+||.... ...+.|||-.|..|+.
T Consensus 20 ~G~l~VTNlRiiW~s~~~~-~~NlSIgy~~i~~i~~ 54 (55)
T smart00683 20 LGVFFVTNLRLVWHSDTNP-RFNISVGYLQITNVRV 54 (55)
T ss_pred eeEEEEEeeEEEEEeCCCC-ceEEEEcceeEEEEEe
Confidence 3999999999999998753 6678999999887753
No 211
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=38.54 E-value=3.3e+02 Score=25.34 Aligned_cols=134 Identities=8% Similarity=0.041 Sum_probs=64.8
Q ss_pred eccccCCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEecccccCCCceeceEEEEeecCCCCc
Q 003874 622 YNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEG 701 (790)
Q Consensus 622 ~~~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~~i~~~~~~vt~~Q~~~~~~~~~~ 701 (790)
++..|+++++.+|+.+.+.+...+++--.+.. .....+... .|+. +.|... ++.+........+........
T Consensus 4 ~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~-~~~~~~d~~-~GG~---~~~~~~---~~~g~~~~~~g~v~e~~p~~~ 75 (139)
T cd08894 4 TTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFT-NTTHEFDLR-PGGR---WRFVMH---GPDGTDYPNRIVFLEIEPPER 75 (139)
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhhccCcCCCc-ceEEEEEec-CCCE---EEEEEE---CCCCCEecceEEEEEEcCCCE
Confidence 45678999999999999888766665322221 111112212 2332 444421 222222222222333444455
Q ss_pred EEEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHHHHH
Q 003874 702 WIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREI 780 (790)
Q Consensus 702 ~vv~~~~t~~dVPygd~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~g~~~~~k~~~~~~~k~v 780 (790)
++..-.. + +.. ....|.|+..+ .+|+|.+... |........++. .++..-+...++.|+.++
T Consensus 76 l~~t~~~---~---~~~--~~v~~~~~~~~---~gT~ltl~~~--~~~~~~~~~~~~----~~~~~Gw~~~l~~L~~~l 137 (139)
T cd08894 76 IVYDHGS---G---PPR--FRLTVTFEEQG---GKTRLTWRQV--FPTAAERCEKIK----FGAVEGNEQTLDRLAAYL 137 (139)
T ss_pred EEEEecc---C---CCc--EEEEEEEEECC---CCEEEEEEEE--cCCHHHHHHHHH----hCHHHHHHHHHHHHHHHH
Confidence 5544211 1 222 33556777655 6788888753 543322222233 344444555555555443
No 212
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=38.29 E-value=2.2e+02 Score=29.25 Aligned_cols=112 Identities=11% Similarity=0.006 Sum_probs=71.4
Q ss_pred chhHHHHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecCCCceeeEEEEEEEEE-eeC-CceEEEEEeeeCCCCCCC
Q 003874 41 SQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYL-KAN-GQEFAILVTVSTPDVPYG 118 (790)
Q Consensus 41 s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~~~k~~~~~e~q~~~-~~~-~~~~~v~~~~~tpdVP~g 118 (790)
...+.+++..|+.-|-.+-.|..-.. .+..+=.+-|...-..|++.--..+-..-. ..+ |.+.++..+|.-|++|--
T Consensus 65 ~~vl~rvL~dR~~WD~~m~e~~~Ie~-Ld~n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~ 143 (205)
T cd08907 65 SVVLQRVLRERHLWDEDLLHSQVIEA-LENNTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLE 143 (205)
T ss_pred HHHHHHHhhchhhhhHHHHhhhhhee-ecCCCEEEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCC
Confidence 34556666667777777777754321 124456777776544555443333332221 122 555556677777777653
Q ss_pred -C--eeEEEEEEEEecCCCCCCCCCccEEEEEEEEEEeeee--ee
Q 003874 119 -N--TFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQST--MM 158 (790)
Q Consensus 119 -~--~F~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~--~~ 158 (790)
+ .-.-.++|.|. +.+..+|+|.=-+++.++|++ |.
T Consensus 144 ~gVRa~~l~sgYlIe-----p~g~g~s~ltyi~rvD~rG~~P~Wy 183 (205)
T cd08907 144 AGVRAVLLTSQYLIE-----PCGMGRSRLTHICRADLRGRSPDWY 183 (205)
T ss_pred CCeEEEEEeccEEEE-----ECCCCCeEEEEEEEeCCCCCCcHHH
Confidence 3 34568899999 778899999999999999984 75
No 213
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=37.46 E-value=3.5e+02 Score=25.36 Aligned_cols=137 Identities=9% Similarity=0.066 Sum_probs=70.0
Q ss_pred eccccCCCHHHHhhhccCchHHHHHHHHcCCcc-eeecCcccCCCCceEEEEEEEecccccCCCceeceEEEEeecCCCC
Q 003874 622 YNAELPISVKALMEMFDGGKLEHQVMEKSGCHN-YVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGE 700 (790)
Q Consensus 622 ~~~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d-~~~~~W~~~~~~~~~R~~sY~~n~~i~~~~~~vt~~Q~~~~~~~~~ 700 (790)
++..|+++++.+|+.|.+.+...++.--.+..- .....|+ .|+. +.|....+- +......-.+.......
T Consensus 4 i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r---~GG~---~~~~~~~~~---g~~~~~~g~~~ei~p~~ 74 (142)
T cd07826 4 ITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIR---VGGS---YRYVHRAPD---GEEMGFHGVYHEVTPPE 74 (142)
T ss_pred EEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEecc---CCCE---EEEEEECCC---CCEecceEEEEEEcCCC
Confidence 456779999999999999888777765433111 1112333 2333 334421111 11222222233444455
Q ss_pred cEEEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHHHHH
Q 003874 701 GWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREI 780 (790)
Q Consensus 701 ~~vv~~~~t~~dVPygd~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~g~~~~~k~~~~~~~k~v 780 (790)
.++..-.. .+.| .. .....|.++..+ .+|+|.+. ..|... ..-+.....++.+-+...++.|.+++
T Consensus 75 ~l~~t~~~--~~~~-~~--~s~v~~~l~~~~---~gT~l~l~--~~~~~~----~~~~~~~~~~~~~Gw~~~l~~L~~~l 140 (142)
T cd07826 75 RIVQTEEF--EGLP-DG--VALETVTFTELG---GRTRLTAT--SRYPSK----EARDGVLASGMEEGMEESYDRLDELL 140 (142)
T ss_pred EEEEEeEe--cCCC-CC--ceEEEEEEEECC---CCEEEEEE--EEeCCH----HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55554322 3334 22 245567777654 67999986 334321 11122344455666666666666665
Q ss_pred H
Q 003874 781 L 781 (790)
Q Consensus 781 ~ 781 (790)
.
T Consensus 141 ~ 141 (142)
T cd07826 141 A 141 (142)
T ss_pred h
Confidence 4
No 214
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=36.88 E-value=3.6e+02 Score=25.29 Aligned_cols=123 Identities=7% Similarity=-0.048 Sum_probs=62.0
Q ss_pred eccccCCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEecccccCCCceeceEEEEeecCCCCc
Q 003874 622 YNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEG 701 (790)
Q Consensus 622 ~~~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~~i~~~~~~vt~~Q~~~~~~~~~~ 701 (790)
++.++++|++.+|++..|-+-+.+++. ++.+....+ ..... ...-.+.|..... .+....... . .........
T Consensus 5 ~~~~i~ap~e~Vw~~~tD~~~~~~w~~--~v~~~~~~~-~~~~~-~~g~~~~~~~~~~-~~~~~~~~~-~-v~~~~p~~~ 77 (146)
T cd07824 5 TVWRIPAPPEAVWDVLVDAESWPDWWP--GVERVVELE-PGDEA-GIGARRRYTWRGL-LPYRLRFEL-R-VTRIEPLSL 77 (146)
T ss_pred EEEEecCCHHHHHHHHhChhhcchhhh--ceEEEEEcc-CCCCC-CcceEEEEEEEec-CCcEEEEEE-E-EEeecCCcE
Confidence 456789999999999988887777777 333443321 00111 1112233432111 111111111 1 111122333
Q ss_pred EEEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEec------ccchhhhhhhhhHH
Q 003874 702 WIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLK------STKFQQRITQNITE 763 (790)
Q Consensus 702 ~vv~~~~t~~dVPygd~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w~K------st~~K~~Iek~~~~ 763 (790)
+.+. ... | |.-+.+|.|+..+ +.|+|.....++... +.+++.++.+....
T Consensus 78 ~~~~-~~g----~----~~~~~~~~~~~~~---~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 133 (146)
T cd07824 78 LEVR-ASG----D----LEGVGRWTLAPDG---SGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRR 133 (146)
T ss_pred EEEE-EEE----e----eeEEEEEEEEEcC---CCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHH
Confidence 3332 221 1 4447888888865 578887777777643 24455555444443
No 215
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=36.55 E-value=2.4e+02 Score=29.75 Aligned_cols=112 Identities=13% Similarity=0.034 Sum_probs=70.8
Q ss_pred EEeeEEecCcccccccccCCCchhHHHHHHHhCccceeeCcCcccCCCCceeEEEEEEEee-cCCCceeeEEEEEEEEEe
Q 003874 20 LLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKA-ATKLVKAVKATEQQTYLK 98 (790)
Q Consensus 20 ~~~~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~-~~~~~k~~~~~e~q~~~~ 98 (790)
-+..+.+++++.++++|.- -...-+|......+..++..+. + .+.|+++-+ ...+++.=-.+-....++
T Consensus 84 K~e~~vd~s~e~v~~lL~D-~~~r~~Wd~~~~e~~vIe~id~-----~----~~vY~v~~~p~~~pvs~RDfV~~~s~~~ 153 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSD-LRRRPEWDKHYRSCELVQQVDE-----D----DAIYHVTSPSLSGHGKPQDFVILASRRK 153 (240)
T ss_pred EEEEEEcCCHHHHHHHHhC-hhhhhhhHhhccEEEEEEecCC-----C----cEEEEEecCCCCCCCCCCeEEEEEEEEe
Confidence 4556889999999999963 2345577777777777755442 2 244444422 334665444443344433
Q ss_pred e--CCceEEE-EEeeeCCCCCCCC----eeEEEEEEEEecCCCCCCCCCccEEEE
Q 003874 99 A--NGQEFAI-LVTVSTPDVPYGN----TFNVQLLYKIIPGPELSSGEDSSHLII 146 (790)
Q Consensus 99 ~--~~~~~~v-~~~~~tpdVP~g~----~F~v~~~y~~~~~~~~~~~~~~~~l~v 146 (790)
. +++.|+| ..++.-|++|=-. .+.....|||+ +.++++|++.-
T Consensus 154 ~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~-----p~~~~~t~vtY 203 (240)
T cd08913 154 PCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIW-----EESDQLTKVSY 203 (240)
T ss_pred ccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEE-----ECCCCcEEEEE
Confidence 2 3556754 6777788888433 45577899999 67788999733
No 216
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=36.00 E-value=80 Score=31.68 Aligned_cols=41 Identities=10% Similarity=0.170 Sum_probs=32.7
Q ss_pred eEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEEeeCC
Q 003874 334 KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDG 374 (790)
Q Consensus 334 ~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~D~d~ 374 (790)
....|.|...+.+|.|+|++.+.+..+ ....|.|+.++.+-
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 356888888999999999999987554 34578899998654
No 217
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=35.86 E-value=3.3e+02 Score=24.58 Aligned_cols=101 Identities=11% Similarity=0.026 Sum_probs=50.8
Q ss_pred ccccCCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEecccccCCCceeceEEEEeecCC-CCc
Q 003874 623 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLAS-GEG 701 (790)
Q Consensus 623 ~~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~~i~~~~~~vt~~Q~~~~~~~-~~~ 701 (790)
+.+++++++.+|+++.|-.-+.+++. .+....|.. .++..+...+.. .+. ..+... .....+ +..
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~-----~~~~~~~~~--~~~~~~~~~~~~---~g~--~~~~~~--i~~~~~~~~~ 72 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWP-----GVKSVELLS--GGGPGTERTVRV---AGR--GTVREE--ITEYDPEPRR 72 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTST-----TEEEEEEEE--ECSTEEEEEEEE---CSC--SEEEEE--EEEEETTTTE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhh-----ceEEEEEcc--ccccceeEEEEe---ccc--cceeEE--EEEecCCCcE
Confidence 34679999999998877554444432 222223332 111122233331 122 222222 222223 344
Q ss_pred EEEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEE
Q 003874 702 WIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISW 747 (790)
Q Consensus 702 ~vv~~~~t~~dVPygd~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w 747 (790)
+...-+ ..|+. ....+|.++..+ ++|+++....+..
T Consensus 73 ~~~~~~----~~~~~---~~~~~~~~~~~~---~gt~v~~~~~~~~ 108 (139)
T PF10604_consen 73 ITWRFV----PSGFT---NGTGRWRFEPVG---DGTRVTWTVEFEP 108 (139)
T ss_dssp EEEEEE----SSSSC---EEEEEEEEEEET---TTEEEEEEEEEEE
T ss_pred EEEEEE----eccee---EEEEEEEEEEcC---CCEEEEEEEEEEE
Confidence 433332 22333 468899999988 3488887777776
No 218
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.92 E-value=48 Score=30.25 Aligned_cols=36 Identities=14% Similarity=0.428 Sum_probs=26.7
Q ss_pred cCceEEEeccEEEEEeccCCCeEEEEEecccceeeEE
Q 003874 483 LQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQI 519 (790)
Q Consensus 483 ~~Grlyis~~~icF~s~~~g~~t~~~i~~~dI~~I~k 519 (790)
-.|++-+...-+-||-+.. -+.-+.|||++|..|-.
T Consensus 23 ~~GkiliGDkgfEFYn~~n-v~k~iqipWs~i~~v~v 58 (122)
T COG4687 23 EYGKILIGDKGFEFYNDRN-VEKFIQIPWSEINEVDV 58 (122)
T ss_pred hcCeEEEcccceeecCCCC-hhheeEecHHHhheehe
Confidence 3588888888888876653 24557899999986655
No 219
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=32.83 E-value=49 Score=34.14 Aligned_cols=36 Identities=33% Similarity=0.432 Sum_probs=29.9
Q ss_pred EEEEEecccceeeEEccccccccCCCcEEEEEEecCCCC
Q 003874 505 TKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLD 543 (790)
Q Consensus 505 t~~~i~~~dI~~I~k~~~~~~~~~~~~i~i~l~~~~gl~ 543 (790)
-.|.+|+.||.+|++.+++ +|.+.|+++++.|..+.
T Consensus 112 ~aFsv~lsdl~Si~~~~p~---~G~~~lv~~~kdG~~~p 147 (213)
T PF12068_consen 112 YAFSVPLSDLKSIRVSKPS---LGWWYLVFILKDGTSLP 147 (213)
T ss_pred eEEEEEhhheeeEEecCCC---CCceEEEEEecCCCccC
Confidence 3688999999999999974 48899999998775553
No 220
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=32.29 E-value=3.3e+02 Score=27.91 Aligned_cols=111 Identities=13% Similarity=0.087 Sum_probs=70.2
Q ss_pred hhHHHHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecCCCceeeEEEEEEEEE-ee-CCceEEEEEeeeCCCCCCCC
Q 003874 42 QFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYL-KA-NGQEFAILVTVSTPDVPYGN 119 (790)
Q Consensus 42 ~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~~~k~~~~~e~q~~~-~~-~~~~~~v~~~~~tpdVP~g~ 119 (790)
.++..++..+..-|-.+..|..-..- +..+-.+-|..-.-.|++.--...-.... +. +|.+.++..++.-|+.|-=+
T Consensus 66 ~VL~~vl~~R~~WD~~~~~~~~ie~l-d~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~g 144 (205)
T cd08909 66 VVLNRVLRERHLWDEDFLQWKVVETL-DKQTEVYQYVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLLG 144 (205)
T ss_pred HHHHHHHhhHhhHHhhcceeEEEEEe-CCCcEEEEEEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCCC
Confidence 46677777777777766666543322 12366667765444466544444443332 33 35544456777788887643
Q ss_pred eeE---EEEEEEEecCCCCCCCCCccEEEEEEEEEEeeee--ee
Q 003874 120 TFN---VQLLYKIIPGPELSSGEDSSHLIISWGIDFHQST--MM 158 (790)
Q Consensus 120 ~F~---v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~--~~ 158 (790)
... ..++|.|+ +.+++.|||.--+.+.+.|+. |+
T Consensus 145 ~VRa~~~~~gylI~-----P~~~g~trvt~i~~vDpkG~~P~W~ 183 (205)
T cd08909 145 GVRAVVLDSQYLIE-----PCGSGKSRLTHICRVDLKGHSPEWY 183 (205)
T ss_pred cEEEEEEcCcEEEE-----ECCCCCEEEEEEEEecCCCCChHHH
Confidence 333 35789999 566678999999999998873 64
No 221
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=31.92 E-value=1.3e+02 Score=30.29 Aligned_cols=40 Identities=10% Similarity=0.202 Sum_probs=32.1
Q ss_pred eEeeeecccCCCCCeEeeEEEEEeecC--CCCeEEEEEEeeC
Q 003874 334 KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 373 (790)
Q Consensus 334 ~~~kT~v~~~tlnP~WnE~f~f~v~~~--~~~~L~v~V~D~d 373 (790)
....|.|...+.+|.|.|++.+.+... ....|.|+.++..
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 356888888889999999999987544 3457889999865
No 222
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=29.92 E-value=4.7e+02 Score=24.52 Aligned_cols=142 Identities=10% Similarity=0.057 Sum_probs=70.3
Q ss_pred eeccccCCCHHHHhhhccCchHHHHHHHHcCCcc-eeecCcccCCCCceEEEEEEEecccccCCCceeceEEEEeecCCC
Q 003874 621 VYNAELPISVKALMEMFDGGKLEHQVMEKSGCHN-YVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASG 699 (790)
Q Consensus 621 v~~~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d-~~~~~W~~~~~~~~~R~~sY~~n~~i~~~~~~vt~~Q~~~~~~~~ 699 (790)
+++..|++|++.+|+.|.+.+...+++--.|..- .....|.. |+. +.|... ++.+........+......
T Consensus 3 ~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~---GG~---~~~~~~---~~~g~~~~~~g~v~~i~p~ 73 (146)
T cd08896 3 VLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRP---GGA---FRTVMR---GPDGEEFPNPGCFLEVVPG 73 (146)
T ss_pred EEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeec---CcE---EEEEEE---CCCCCEecceEEEEEEeCC
Confidence 3456789999999999988887777654333221 11122322 222 344421 2222223222334444455
Q ss_pred CcEEEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHHHH
Q 003874 700 EGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVERE 779 (790)
Q Consensus 700 ~~~vv~~~~t~~dVPygd~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~g~~~~~k~~~~~~~k~ 779 (790)
..++......-..-|-++.. ....|.|+..+ ++|+|.+.. ..+. ....+.....|+..-+...++.|+.+
T Consensus 74 ~~l~~t~~~~~~~~~~~~~~-~~v~~~~~~~~---~gT~Ltl~~-~~~~-----~~~~~~~~~~~~~~GW~~~l~~L~~~ 143 (146)
T cd08896 74 ERLVFTDALTPGWRPAEKPF-MTAIITFEDEG---GGTRYTARA-RHWT-----EADRKQHEEMGFHDGWGTAADQLAAL 143 (146)
T ss_pred CEEEEEEeecCCcCCCCCCc-EEEEEEEEecC---CcEEEEEEE-EeCC-----HHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 55555532221112323332 34567787655 689998752 2221 11122223344556666666666666
Q ss_pred HH
Q 003874 780 IL 781 (790)
Q Consensus 780 v~ 781 (790)
+.
T Consensus 144 l~ 145 (146)
T cd08896 144 AE 145 (146)
T ss_pred Hh
Confidence 53
No 223
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=29.83 E-value=4.5e+02 Score=24.31 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=59.8
Q ss_pred EeeEEecCcccccccccCCCchhHHHHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecCCCceeeEEEEEEEEEeeC
Q 003874 21 LDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKAN 100 (790)
Q Consensus 21 ~~~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~~~k~~~~~e~q~~~~~~ 100 (790)
+-+.+++|++.+|+.|=. ....++ ++.++-...+- .+ .-++|.|.+++.. .+++..++- ..
T Consensus 3 I~~~l~v~a~~ff~~l~~---s~~~DI---~~~tgk~~~~~--------~L-~G~~Y~K~~~~~~-~~~v~It~~---~~ 63 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLID---SLLYDI---KQATGKKLPVK--------QL-KGFSYQKKFKNKR-EAKVKITEY---EP 63 (120)
T ss_pred EEEEecCCHHHHHHHHHH---HHHHHH---HHHcCCCCChh--------hc-CCcEEEEEcCCCC-EEEEEEEEE---cC
Confidence 345677888887776653 333333 33333323221 33 5589999988755 233332211 23
Q ss_pred CceEEEEEeeeCCCCCCCCeeEEEEEEEEecCCCCCCCCCccEEEEEEEEE
Q 003874 101 GQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGID 151 (790)
Q Consensus 101 ~~~~~v~~~~~tpdVP~g~~F~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~ 151 (790)
++.|.+..++.. ....++|-|. ..++++|+|..+=.++
T Consensus 64 ~~~Y~~~~~s~~--------~~~~i~Y~i~-----~~~~~~~~v~y~E~~~ 101 (120)
T PF11687_consen 64 NKRYAATFSSSR--------GTFTISYEIE-----PLDDGSIEVTYEEEYE 101 (120)
T ss_pred CCEEEEEEEecC--------CCEEEEEEEE-----ECCCCcEEEEEEEEEc
Confidence 688888766532 3367899999 6777888887776553
No 224
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.27 E-value=4.7e+02 Score=24.31 Aligned_cols=138 Identities=9% Similarity=-0.013 Sum_probs=63.0
Q ss_pred ccccCCCHHHHhhhccCchHHHHHHHHcC-CcceeecCcccCCCCceEEEEEEEecccccCCCceeceEEEEeecCCCCc
Q 003874 623 NAELPISVKALMEMFDGGKLEHQVMEKSG-CHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEG 701 (790)
Q Consensus 623 ~~~~p~s~~~lf~lF~~~~f~~~~~~~~g-~~d~~~~~W~~~~~~~~~R~~sY~~n~~i~~~~~~vt~~Q~~~~~~~~~~ 701 (790)
+.+++.|++.+|+++.|-.-+.+++--.. ...+...........+.+ +.|.....++. ...+ .........
T Consensus 7 s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~--~~~~~~~~~~~--~~~~----v~~~~p~~~ 78 (150)
T cd07818 7 SIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGAS--YSWEGNDKVGE--GEME----ITESVPNER 78 (150)
T ss_pred EEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeE--EEEecCCcccc--eEEE----EEecCCCcE
Confidence 34679999999998877665555543211 112222111111111112 44542111111 1111 112222333
Q ss_pred EEEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHH
Q 003874 702 WIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVE 777 (790)
Q Consensus 702 ~vv~~~~t~~dVPygd~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~g~~~~~k~~~~~~~ 777 (790)
++..... +-|+. +.....|.++..+ .+|+|.+....+....... ..+.......+++.+...++.++
T Consensus 79 i~~~~~~---~~~~~--~~~~~~~~~~~~~---~gT~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~lk 145 (150)
T cd07818 79 IEYELRF---IKPFE--ATNDVEFTLEPVG---GGTKVTWGMSGELPFPLKL-MYLFLDMDKMIGKDFEKGLANLK 145 (150)
T ss_pred EEEEEEe---cCCcc--ccceEEEEEEEcC---CceEEEEEEEecCCchHHH-HHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333222 22332 3678999999886 4788888776665543221 23333333333344444444433
No 225
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.11 E-value=4.4e+02 Score=23.91 Aligned_cols=26 Identities=8% Similarity=0.171 Sum_probs=21.1
Q ss_pred cccCCCHHHHhhhccCchHHHHHHHH
Q 003874 624 AELPISVKALMEMFDGGKLEHQVMEK 649 (790)
Q Consensus 624 ~~~p~s~~~lf~lF~~~~f~~~~~~~ 649 (790)
.+++.|++.+|+++.|-+-+.++.-.
T Consensus 6 i~I~ap~e~V~~~~~D~~~~~~w~~~ 31 (139)
T cd07817 6 ITVNVPVEEVYDFWRDFENLPRFMSH 31 (139)
T ss_pred EEeCCCHHHHHHHHhChhhhHHHhhh
Confidence 45789999999999888877777664
No 226
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=28.37 E-value=6.4e+02 Score=25.58 Aligned_cols=129 Identities=9% Similarity=0.038 Sum_probs=69.6
Q ss_pred ccccCCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEe-ccc--ccCCCceec-eEEEEeecCC
Q 003874 623 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF-NRH--VSIFGGEVT-CTQQKSPLAS 698 (790)
Q Consensus 623 ~~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~-n~~--i~~~~~~vt-~~Q~~~~~~~ 698 (790)
..+++.++..+..++.+.++...+...+.... .+.. .+.. ..+.|.. +.| ++. -.+. ..+......+
T Consensus 51 e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~-~l~~-----~~~~-~~v~y~~~~~PwPv~~--RD~v~~~~~~~~~~~ 121 (215)
T cd08877 51 EGEIDGPLFNLLALLNEVELYKTWVPFCIRSK-KVKQ-----LGRA-DKVCYLRVDLPWPLSN--REAVFRGFGVDRLEE 121 (215)
T ss_pred EEEecCChhHeEEEEehhhhHhhhcccceeeE-EEee-----cCCc-eEEEEEEEeCceEecc--eEEEEEEEEEeeecc
Confidence 46779999999998878887777766532211 1111 1112 2345543 333 332 1222 2222222323
Q ss_pred CCcEEEEEEEecC--C--------CCCCC-ce----EEEEEEEEEecCCCCCccEEEEEEEEEEecc---cchhhhhhhh
Q 003874 699 GEGWIVNEVMSLH--D--------VPFDD-HF----RVHFRYEIEKSPLAHNACKCAIYIGISWLKS---TKFQQRITQN 760 (790)
Q Consensus 699 ~~~~vv~~~~t~~--d--------VPygd-~F----~v~~ry~i~~~~~~~~~c~l~V~~~V~w~Ks---t~~K~~Iek~ 760 (790)
+..++|.-....+ + +|-.+ .+ .....|.|++.+ +++|+++..+.++-..+ .|+=..+.+.
T Consensus 122 ~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~--~~~t~v~~~~~~DP~g~~IP~~liN~~~k~ 199 (215)
T cd08877 122 NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPIS--PTKCYLRFVANVDPKMSLVPKSLLNFVARK 199 (215)
T ss_pred CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcC--CCCeEEEEEEEcCCCcccCCHHHHHHHHHH
Confidence 4445544222211 1 56554 33 356778899887 78999999999987666 4554444443
Q ss_pred hH
Q 003874 761 IT 762 (790)
Q Consensus 761 ~~ 762 (790)
..
T Consensus 200 ~~ 201 (215)
T cd08877 200 FA 201 (215)
T ss_pred HH
Confidence 33
No 227
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=27.49 E-value=6.2e+02 Score=25.08 Aligned_cols=80 Identities=10% Similarity=0.061 Sum_probs=52.5
Q ss_pred CCCCcEEEEEEEecCCCCC--CCceEEE---EEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHH
Q 003874 697 ASGEGWIVNEVMSLHDVPF--DDHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKE 771 (790)
Q Consensus 697 ~~~~~~vv~~~~t~~dVPy--gd~F~v~---~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~g~~~~~k~ 771 (790)
.++..+++......+..|- .++-+++ ..|+|++.+ ++.|++.....++-.++.- +..+..-+.+.+.+.++.
T Consensus 119 ~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~--~~~~~vt~~~~~D~~G~iP-~~~~n~~~~~~~~~~~~~ 195 (206)
T PF01852_consen 119 EDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLG--DGRTRVTYVSQVDPKGWIP-SWLVNMVVKSQPPNFLKN 195 (206)
T ss_dssp TTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEET--TCEEEEEEEEEEESSSSSH-HHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEcc--CCCceEEEEEEECCCCCCh-HHHHHHHHHHhHHHHHHH
Confidence 4444455555555577764 5666654 568999988 5679999999988876532 444444455556677777
Q ss_pred HHHHHHHH
Q 003874 772 MIELVERE 779 (790)
Q Consensus 772 ~~~~~~k~ 779 (790)
+.+.++++
T Consensus 196 ~~~~~~~~ 203 (206)
T PF01852_consen 196 LRKALKKQ 203 (206)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 77776664
No 228
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=26.47 E-value=3.8e+02 Score=25.89 Aligned_cols=120 Identities=17% Similarity=0.220 Sum_probs=71.0
Q ss_pred CCceEEeeEEecCcccccccccCCCchhHHHHH-HHhCccceeeCcCcccCCCCceeEEEEEEEeecCCCceeeEEEEEE
Q 003874 16 QGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLA-ELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQ 94 (790)
Q Consensus 16 ~g~~~~~~~~~~~~~~l~~llf~~~s~f~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~~~k~~~~~e~q 94 (790)
.|.+-..-...+|++++|..+.. ....+..++ +.=+.-++-.|+|... ---|.++|.-+. +.+.. .|
T Consensus 3 ~~~~~~E~~~~~~a~k~~ka~~~-~~~llpki~P~~i~sve~~eGdgg~g-----GSIk~~~f~~~~--~~~~~----Ke 70 (151)
T PF00407_consen 3 VGKLEVEVEVKVSADKLWKAFKS-SPHLLPKILPHVIKSVEVVEGDGGPG-----GSIKKWTFGPGG--PFKYV----KE 70 (151)
T ss_dssp EEEEEEEEEESS-HHHHHHHHTT-HHHHHHHHSTTTEEEEEEEESSSSTT-----T-EEEEEEETTS--SEEEE----EE
T ss_pred cEEEEEEEEecCCHHHHHHHHhc-CccchhhhChhhceeEEEEccCCCCC-----CeEEEEEecCCC--Cccee----EE
Confidence 34566677889999999999775 344554443 4556677788998443 237999998743 23322 34
Q ss_pred EEEeeCCceEEEEEeeeCCCCCCCCeeEEEEEEEEecCCCCCCCCCccEEEEEEEEEEeee
Q 003874 95 TYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQS 155 (790)
Q Consensus 95 ~~~~~~~~~~~v~~~~~tpdVP~g~~F~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~ 155 (790)
.+...|.....+..++.-=|+ -+++..-...+...|. ++..| .+.|.++|.+.
T Consensus 71 kve~~D~~~~~~~y~viEGd~-l~~~~~~~~~~~~~~~-----~~g~~--v~k~t~~Ye~~ 123 (151)
T PF00407_consen 71 KVEAIDEENKTITYTVIEGDV-LGDYKSFKSTIQKIPK-----GDGGC--VVKWTIEYEKK 123 (151)
T ss_dssp EEEEEETTTTEEEEEEEEETT-GTTTEEEEEEEEEEEE-----TTSCE--EEEEEEEEEES
T ss_pred EEEeecCCCcEEEEEEEeccc-cccEEEEEEEEEecCC-----CCCce--EEEEEEEEEec
Confidence 444556666666666666664 2334444444444443 33545 56677777764
No 229
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=26.29 E-value=7e+02 Score=25.34 Aligned_cols=78 Identities=10% Similarity=-0.002 Sum_probs=45.3
Q ss_pred CCCcEEEEEEEecC-CC-CCCCceEEEEE---EEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHH
Q 003874 698 SGEGWIVNEVMSLH-DV-PFDDHFRVHFR---YEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEM 772 (790)
Q Consensus 698 ~~~~~vv~~~~t~~-dV-Pygd~F~v~~r---y~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~g~~~~~k~~ 772 (790)
++..+++.-....+ .. |-.++.+++.. |.+...+.++++|++.-.+.+++. ...=+..|.+...+.+.+.++.|
T Consensus 123 ~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk-G~iP~~lvn~~~~~~~~~~~~~L 201 (208)
T cd08903 123 EDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLS-GYLPQTVVDSFFPASMAEFYNNL 201 (208)
T ss_pred CCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccC-CCcCHHHHHHHhhHHHHHHHHHH
Confidence 34445555323322 33 34566667554 455555545789999999999995 33336666665555555555555
Q ss_pred HHHH
Q 003874 773 IELV 776 (790)
Q Consensus 773 ~~~~ 776 (790)
-..+
T Consensus 202 r~~~ 205 (208)
T cd08903 202 TKAV 205 (208)
T ss_pred HHHH
Confidence 4443
No 230
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=25.36 E-value=5e+02 Score=28.71 Aligned_cols=108 Identities=15% Similarity=0.205 Sum_probs=69.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCeEe--eEEEEEeecCCCCeEEEEEEeeCCCCCCCC
Q 003874 303 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWH--DILEFDAMEEPPSVLDVEVFDFDGPFDQAT 380 (790)
Q Consensus 303 ~L~V~vl~A~~L~~~d~~g~sDPyV~v~l~~~~~kT~v~~~tlnP~Wn--E~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 380 (790)
.|-|.|-+-.++.. ...-|+.+..|....+|..+.-+..-.-+ +.....+ ..-...|+|.||-..- .+..
T Consensus 59 ~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkI-RQcDnTLkI~lfKKkL--vkk~ 130 (508)
T PTZ00447 59 YLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKI-RQCDETLRVDLFTTKL--TKKV 130 (508)
T ss_pred eEEEEehhhhcccc-----ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeee-eecCceEEEEEEeccc--ccee
Confidence 46666666555432 24678888889888888655433332222 4444444 2345689999987664 5678
Q ss_pred ccccEEEecee--cCCCCceeEEEEccccccCcCCceeEEEE
Q 003874 381 SLGHAEINFLK--HTSTELADMWVSLEGKLAQSAQSKVHLRI 420 (790)
Q Consensus 381 ~LG~~~i~L~~--l~~~~~~~~w~~L~~k~~~~~~G~l~L~i 420 (790)
.||.+.+++.. +...=+...||.+.. .| ...++|.|.+
T Consensus 131 hIgdI~InIn~dIIdk~FPKnkWy~c~k-DG-q~~cRIqLSF 170 (508)
T PTZ00447 131 HIGQIKIDINASVISKSFPKNEWFVCFK-DG-QEICKVQMSF 170 (508)
T ss_pred EEEEEEecccHHHHhccCCccceEEEec-CC-ceeeeEEEEe
Confidence 99999999876 344556688999953 22 2457777777
No 231
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=24.41 E-value=5.3e+02 Score=24.18 Aligned_cols=73 Identities=12% Similarity=0.182 Sum_probs=46.4
Q ss_pred CCceEEEEEeeeCCCCCCCCeeEEEEEEEEecCCCCCCCCCccEEEEEEEEEEeee--eeeeeeeeccccccHHHHHHHH
Q 003874 100 NGQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQS--TMMRGMIEGGARQGLKESFEQF 177 (790)
Q Consensus 100 ~~~~~~v~~~~~tpdVP~g~~F~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~--~~~K~~Ie~~~~~G~~~~~~~~ 177 (790)
+...+.+..+-..+ .-|-........-.. .+.. |+|..+..++..+. ++.+++|+.-++.=+++.|+.+
T Consensus 65 ~~~~~~~~~~g~g~--~~~~~~~~~~~~~~~------~~~~-T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l 135 (140)
T PF06240_consen 65 PPESYTLEFEGRGR--GGGSSASANITLSLE------DDGG-TRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENL 135 (140)
T ss_dssp TTTEEEEEEEEEEC--TCCEEEEEEEEEEEC------CCTC-EEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEeeeeccCC--ccceEEEEEEEEEcC------CCCC-cEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34555566666554 344455555554443 2233 99999999888886 6888888877777776777666
Q ss_pred HHHH
Q 003874 178 ANLL 181 (790)
Q Consensus 178 ~~~l 181 (790)
...|
T Consensus 136 ~~~l 139 (140)
T PF06240_consen 136 ERKL 139 (140)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6544
No 232
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=23.69 E-value=3.7e+02 Score=25.34 Aligned_cols=141 Identities=11% Similarity=0.017 Sum_probs=78.1
Q ss_pred eEEeeEEecCcccccccccCCCchhHHHHHHHhC-----ccceeeCcCcccCCCCceeEEEEEEEeecCCCceeeEEEEE
Q 003874 19 ILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQG-----TKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQ 93 (790)
Q Consensus 19 ~~~~~~~~~~~~~l~~llf~~~s~f~~~~~~~~~-----~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~~~~k~~~~~e~ 93 (790)
|-...+|++|++++|+.+=. ..-+++..... .....+++.. +| . +.+..+ ... .+ ..
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~---~l~~W~~p~~~~~~~~~~~~~~d~~~---GG--~----~~~~~~-~g~----~~-~~ 63 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE---GFGAWWPPEYHFVFSPGAEVVFEPRA---GG--R----WYEIGE-DGT----EC-EW 63 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh---chhhccCCCcccccCCCccEEEcccC---Cc--E----EEEecC-CCc----Ee-ce
Confidence 45678999999999998853 45566653321 1233444431 12 1 122211 111 11 24
Q ss_pred EEEEeeCCceEEEEEeeeCCCCCCCCeeEEEEEEEEecCCCCCCCCCccEEEEEEEEEEeeee--eeeeeeeccccccHH
Q 003874 94 QTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQST--MMRGMIEGGARQGLK 171 (790)
Q Consensus 94 q~~~~~~~~~~~v~~~~~tpdVP~g~~F~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~--~~K~~Ie~~~~~G~~ 171 (790)
.+++..+....++..-...++-+...-......+-|. ..+++.|+|++...- |.... |.+..+..++.+|-.
T Consensus 64 g~v~~v~p~~~l~~tw~~~~~~~~~~~~~t~vt~~l~-----~~~~~gT~ltl~~~~-~~~~~~~~~~~~~~~~~~~GW~ 137 (149)
T cd08891 64 GTVLAWEPPSRLVFTWQINADWRPDPDKASEVEVRFE-----AVGAEGTRVELEHRG-FERHGDGWEAAAMRMGYDGGWP 137 (149)
T ss_pred EEEEEEcCCCEEEEEeccCCCcCcCCCCceEEEEEEE-----ECCCCCeEEEEEEec-ccccCcchhhHHHHhcccCcHH
Confidence 5666666444444433333333222213456888888 444367998876553 33322 455667778889998
Q ss_pred HHHHHHHHHHHh
Q 003874 172 ESFEQFANLLAQ 183 (790)
Q Consensus 172 ~~~~~~~~~l~~ 183 (790)
..+++|...|.|
T Consensus 138 ~~L~~L~~~l~~ 149 (149)
T cd08891 138 LLLERYAAAAEK 149 (149)
T ss_pred HHHHHHHHHhcC
Confidence 888888777653
No 233
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=23.68 E-value=8e+02 Score=25.08 Aligned_cols=118 Identities=6% Similarity=0.003 Sum_probs=64.8
Q ss_pred ccccCCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEecccccC--CCceeceEEEEeecCCCC
Q 003874 623 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSI--FGGEVTCTQQKSPLASGE 700 (790)
Q Consensus 623 ~~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~~i~~--~~~~vt~~Q~~~~~~~~~ 700 (790)
..+++.+++.+++++.|.....++.......++- . +.+ ...+-+.++.+.|.-. +.-.+...+.. . .+++
T Consensus 50 e~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl--~-~~~---~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~-~-~~~~ 121 (205)
T cd08874 50 AGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIH--K-TFT---EDICLVYLVHETPLCLLKQPRDFCCLQVE-A-KEGE 121 (205)
T ss_pred EEEEcCCHHHHHHHHhCcchhhhhHHhhhheeee--e-ecC---CCeEEEEEEecCCCCCCCCCCeEEEEEEE-E-ECCC
Confidence 4577999999999777766555554443322222 2 112 2234455554445422 22344443432 2 3455
Q ss_pred cEEEE-EEEecCCCCCC--Cc---eEEEEEEEEEecCCC-CCccEEEEEEEEEEe
Q 003874 701 GWIVN-EVMSLHDVPFD--DH---FRVHFRYEIEKSPLA-HNACKCAIYIGISWL 748 (790)
Q Consensus 701 ~~vv~-~~~t~~dVPyg--d~---F~v~~ry~i~~~~~~-~~~c~l~V~~~V~w~ 748 (790)
.++|. ....-+.+|-- ++ +.+...|.|++...+ +++|+|.-...++=-
T Consensus 122 ~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPg 176 (205)
T cd08874 122 LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALC 176 (205)
T ss_pred cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCC
Confidence 55544 33332466633 34 457789999998211 468988888777655
No 234
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=23.67 E-value=8e+02 Score=25.10 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=62.3
Q ss_pred ccccCCCHHHHhhhc-cCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEecccccCCCceeceEEE-EeecCCCC
Q 003874 623 NAELPISVKALMEMF-DGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQ-KSPLASGE 700 (790)
Q Consensus 623 ~~~~p~s~~~lf~lF-~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~~i~~~~~~vt~~Q~-~~~~~~~~ 700 (790)
..+++.++..+..++ ++-.-|-..+.+.. .+. .-+.....+.|.++.|...+.-.+..... +....++.
T Consensus 57 ~~~i~a~~~~vl~~lld~~~~Wd~~~~e~~--vIe-------~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~ 127 (204)
T cd08908 57 TIEVPAAPEEILKRLLKEQHLWDVDLLDSK--VIE-------ILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGA 127 (204)
T ss_pred EEEeCCCHHHHHHHHHhhHHHHHHHhhheE--eeE-------ecCCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCe
Confidence 356788888888744 33222222222211 111 11223345556555442212122222211 22234444
Q ss_pred cEEEEEEEecCCCCCCCceE---EEEEEEEEecCCCCCccEEEEEEEEEEeccc
Q 003874 701 GWIVNEVMSLHDVPFDDHFR---VHFRYEIEKSPLAHNACKCAIYIGISWLKST 751 (790)
Q Consensus 701 ~~vv~~~~t~~dVPygd~F~---v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst 751 (790)
..++.....-+.+|-. .-+ +..+|.|++.+ +++|+|.--+.++.-++.
T Consensus 128 ~~I~~~Sv~h~~~P~~-~VR~~~~~~~w~i~P~g--~g~t~vtyi~~~DPgG~i 178 (204)
T cd08908 128 CALLATSVDHDRAPVA-GVRVNVLLSRYLIEPCG--SGKSKLTYMCRIDLRGHM 178 (204)
T ss_pred EEEEEeecCcccCCcC-ceEEEEEeeEEEEEECC--CCcEEEEEEEEeCCCCCC
Confidence 4444453444778854 444 47889999987 689999999999987763
No 235
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=23.48 E-value=5.7e+02 Score=23.69 Aligned_cols=135 Identities=12% Similarity=0.100 Sum_probs=68.6
Q ss_pred eEEeeEEecCcccccccccCCCchhHHHHHHHh-CccceeeCcCcccCCCCceeEEEEEEEee-cCCCceeeEEEEEEEE
Q 003874 19 ILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQ-GTKDVQEGPWEWKSGEMTCLTRAVSYMKA-ATKLVKAVKATEQQTY 96 (790)
Q Consensus 19 ~~~~~~~~~~~~~l~~llf~~~s~f~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~R~~~y~~~-~~~~~k~~~~~e~q~~ 96 (790)
+.+...|++|++++|+.+=.| ...-+++.... ......+. + ...| .+.|... .... .....-++
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p-~~l~~W~~p~~~~~~~~~~d-~--~~GG------~~~~~~~~~~g~----~~~~~g~v 67 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDP-EHLAQWWGPEGFTNTTHEFD-L--RPGG------RWRFVMHGPDGT----DYPNRIVF 67 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCH-HHHhhccCcCCCcceEEEEE-e--cCCC------EEEEEEECCCCC----EecceEEE
Confidence 678999999999999998764 23445543111 11122222 1 1123 1444332 1111 11123345
Q ss_pred EeeCCceEEEEEeeeCCCCCCCCeeEEEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeeeeeeccccccHHHHHHH
Q 003874 97 LKANGQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQ 176 (790)
Q Consensus 97 ~~~~~~~~~v~~~~~tpdVP~g~~F~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K~~Ie~~~~~G~~~~~~~ 176 (790)
+..+.....+..-. .+ +.. ....+.|. ..+ ..|||.+... |........++..|...|....+++
T Consensus 68 ~e~~p~~~l~~t~~--~~---~~~--~~v~~~~~-----~~~-~gT~ltl~~~--~~~~~~~~~~~~~~~~~Gw~~~l~~ 132 (139)
T cd08894 68 LEIEPPERIVYDHG--SG---PPR--FRLTVTFE-----EQG-GKTRLTWRQV--FPTAAERCEKIKFGAVEGNEQTLDR 132 (139)
T ss_pred EEEcCCCEEEEEec--cC---CCc--EEEEEEEE-----ECC-CCEEEEEEEE--cCCHHHHHHHHHhCHHHHHHHHHHH
Confidence 55553333333221 11 222 33567788 444 6799998864 5433333333445666777777777
Q ss_pred HHHHHH
Q 003874 177 FANLLA 182 (790)
Q Consensus 177 ~~~~l~ 182 (790)
|...|.
T Consensus 133 L~~~l~ 138 (139)
T cd08894 133 LAAYLA 138 (139)
T ss_pred HHHHHh
Confidence 666654
No 236
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=22.92 E-value=5.7e+02 Score=26.29 Aligned_cols=54 Identities=11% Similarity=0.128 Sum_probs=40.0
Q ss_pred cCCCCcEEEEEEEecCCCCCCC---ceEEEEEEEEEecCCCCCccEEEEEEEEEEeccc
Q 003874 696 LASGEGWIVNEVMSLHDVPFDD---HFRVHFRYEIEKSPLAHNACKCAIYIGISWLKST 751 (790)
Q Consensus 696 ~~~~~~~vv~~~~t~~dVPygd---~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst 751 (790)
...+.+++++....-+.+|.-. .-...++|.|++.+ +++|+|.=.+++++.+++
T Consensus 123 l~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g--~g~s~ltyi~rvD~rG~~ 179 (205)
T cd08907 123 LPRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCG--MGRSRLTHICRADLRGRS 179 (205)
T ss_pred CCCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECC--CCCeEEEEEEEeCCCCCC
Confidence 3445666777444436666554 45678999999988 689999999999998874
No 237
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=22.88 E-value=7e+02 Score=25.59 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=44.9
Q ss_pred ceEEEEEeeeCCCCCCCCee---EEEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeee-eeeeeccccccHHHHHHHH
Q 003874 102 QEFAILVTVSTPDVPYGNTF---NVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMM-RGMIEGGARQGLKESFEQF 177 (790)
Q Consensus 102 ~~~~v~~~~~tpdVP~g~~F---~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~-K~~Ie~~~~~G~~~~~~~~ 177 (790)
..+.+-+++.-|..|- +.= .--+-|++.| ..++.++....|-|..-=+.|| |++|++.--++|-++|.+|
T Consensus 124 ~~~s~gvs~~~~~~pp-g~VRgen~p~g~i~~P-----l~~~p~k~~~t~~lq~DLkG~LPqsiIdq~~~~~~~~F~~~L 197 (202)
T cd08902 124 GLLSCGVSIEYEEARP-NFVRGFNHPCGWFCVP-----LKDNPSHSLLTGYIQTDLRGMLPQSAVDTAMASTLVNFYSDL 197 (202)
T ss_pred CeEEEEeeecCCCCCC-CeEeecccccEEEEEE-----CCCCCCceEEEEEEEecCCCCccHHHHHHHhhHHHHHHHHHH
Confidence 3344556666666776 433 3334567774 3445555555555554444554 8899988888887777776
Q ss_pred HHHH
Q 003874 178 ANLL 181 (790)
Q Consensus 178 ~~~l 181 (790)
...|
T Consensus 198 rk~~ 201 (202)
T cd08902 198 KKAL 201 (202)
T ss_pred HHhc
Confidence 6554
No 238
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=22.82 E-value=7.9e+02 Score=24.71 Aligned_cols=147 Identities=12% Similarity=0.110 Sum_probs=76.9
Q ss_pred eEEeeEEecCcccccccccCCCch-hHHHHHHHhCccceeeCcCcccCCCCceeEEEEEEEeecC---CCceeeEEEEEE
Q 003874 19 ILLDQLYQVSPCDLNTFLFAPDSQ-FRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAAT---KLVKAVKATEQQ 94 (790)
Q Consensus 19 ~~~~~~~~~~~~~l~~llf~~~s~-f~~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~~~~---~~~k~~~~~e~q 94 (790)
+.+.-++++++++++.+|+..+.. .-+|-....++.-++.-+ ++ +. +.|..... .+++.=-..-.+
T Consensus 48 ~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id-----~~----~~-i~~~~~p~~~~~~vs~RDfV~~~ 117 (206)
T cd08867 48 YRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKIS-----ED----LC-VGRTITPSAAMGLISPRDFVDLV 117 (206)
T ss_pred EEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeC-----CC----eE-EEEEEccccccCccCCcceEEEE
Confidence 556678899999999999852222 233332222333232221 12 33 34544322 234332222223
Q ss_pred EEEeeCCceEEEE-EeeeCCCCCCC-CeeE---EEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeeeeeecccccc
Q 003874 95 TYLKANGQEFAIL-VTVSTPDVPYG-NTFN---VQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQG 169 (790)
Q Consensus 95 ~~~~~~~~~~~v~-~~~~tpdVP~g-~~F~---v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K~~Ie~~~~~G 169 (790)
...+.++..|++. .++.-|.+|=- ++-+ ....|.|.|-+ .+++.|++.--..+...|+ +-+.++-+.+-++
T Consensus 118 ~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~---~~~~~t~~~~~~~~DpkG~-iP~~lvn~~~~~~ 193 (206)
T cd08867 118 YVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLK---GSPDKSFLVLYVQTDLRGM-IPQSLVESAMPSN 193 (206)
T ss_pred EEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECC---CCCCceEEEEEEEeccCCC-CcHHHHHhhhhhh
Confidence 3334444455544 55655777653 3333 34567888432 1356788888888888775 2344455555666
Q ss_pred HHHHHHHHHH
Q 003874 170 LKESFEQFAN 179 (790)
Q Consensus 170 ~~~~~~~~~~ 179 (790)
+.+++..|..
T Consensus 194 ~~~~~~~lr~ 203 (206)
T cd08867 194 LVNFYTDLVK 203 (206)
T ss_pred HHHHHHHHHH
Confidence 6555555443
No 239
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=20.43 E-value=9e+02 Score=24.47 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=78.8
Q ss_pred eEEeeEEecCcccccccccCCCchhH-HHHHHHhCccceeeCcCcccCCCCceeEEEEEEEe-ecCCCceeeEEEE-EEE
Q 003874 19 ILLDQLYQVSPCDLNTFLFAPDSQFR-KDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMK-AATKLVKAVKATE-QQT 95 (790)
Q Consensus 19 ~~~~~~~~~~~~~l~~llf~~~s~f~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~R~~~y~~-~~~~~~k~~~~~e-~q~ 95 (790)
+-+.-+++.++..+.++|.- .+.. +|+........+... + . ...+.|++ .+.-|+..--+.- .+.
T Consensus 48 ~k~e~~i~~~~~~~~~vl~d--~~~~~~W~p~~~~~~~l~~~-------~--~-~~~v~y~~~~~PwPv~~RD~v~~~~~ 115 (215)
T cd08877 48 LRMEGEIDGPLFNLLALLNE--VELYKTWVPFCIRSKKVKQL-------G--R-ADKVCYLRVDLPWPLSNREAVFRGFG 115 (215)
T ss_pred EEEEEEecCChhHeEEEEeh--hhhHhhhcccceeeEEEeec-------C--C-ceEEEEEEEeCceEecceEEEEEEEE
Confidence 34677889999999999984 4433 444332222222111 1 1 12355554 3444554333322 232
Q ss_pred EEee-CCceEEEEEeeeCC--C--------CCCCC-----eeEEEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeee
Q 003874 96 YLKA-NGQEFAILVTVSTP--D--------VPYGN-----TFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMR 159 (790)
Q Consensus 96 ~~~~-~~~~~~v~~~~~tp--d--------VP~g~-----~F~v~~~y~~~~~~~~~~~~~~~~l~vs~~i~~~~~~~~K 159 (790)
+... ++..++|.+....+ + +|=.. .-.....|.|+ +.++++|+++..+.++-.++=+=+
T Consensus 116 ~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~-----p~~~~~t~v~~~~~~DP~g~~IP~ 190 (215)
T cd08877 116 VDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVIT-----PISPTKCYLRFVANVDPKMSLVPK 190 (215)
T ss_pred EeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEE-----EcCCCCeEEEEEEEcCCCcccCCH
Confidence 3233 34456555544431 1 45443 24456778899 677899999999999887771113
Q ss_pred eeeeccccccHHHHHHHHHHHH
Q 003874 160 GMIEGGARQGLKESFEQFANLL 181 (790)
Q Consensus 160 ~~Ie~~~~~G~~~~~~~~~~~l 181 (790)
.+|-..+++.....|..|..+.
T Consensus 191 ~liN~~~k~~~~~~~~~l~k~~ 212 (215)
T cd08877 191 SLLNFVARKFAGLLFEKIQKAA 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555444
No 240
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=20.36 E-value=6.3e+02 Score=22.67 Aligned_cols=135 Identities=5% Similarity=-0.039 Sum_probs=62.4
Q ss_pred ccccCCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEecccccCCCceeceEEEEeecCCCCcE
Q 003874 623 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGW 702 (790)
Q Consensus 623 ~~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~n~~i~~~~~~vt~~Q~~~~~~~~~~~ 702 (790)
+..+++|++.+|+++.|-.-+.+++. .+..+. +.....| ....+... .+-+ .................+
T Consensus 5 ~~~i~ap~~~Vw~~~~d~~~~~~w~~--~~~~~~---~~~~~~G-~~~~~~~~--~~~~---~~~~~~~~v~~~~p~~~~ 73 (141)
T cd07822 5 EIEINAPPEKVWEVLTDFPSYPEWNP--FVRSAT---GLSLALG-ARLRFVVK--LPGG---PPRSFKPRVTEVEPPRRL 73 (141)
T ss_pred EEEecCCHHHHHHHHhccccccccCh--hheeEe---ccccCCC-CEEEEEEe--CCCC---CcEEEEEEEEEEcCCCEe
Confidence 34679999999997766554444432 111111 1101122 22223322 1111 112222222233334444
Q ss_pred EEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHHHH
Q 003874 703 IVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVERE 779 (790)
Q Consensus 703 vv~~~~t~~dVPygd~F~v~~ry~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~g~~~~~k~~~~~~~k~ 779 (790)
....... |.+ -+.....|.++..+ +++|++.... .|.+ .............+...++.+++.|+++
T Consensus 74 ~~~~~~~----~~~-~~~~~~~~~~~~~~--~~~T~~~~~~--~~~g--~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 139 (141)
T cd07822 74 AWRGGLP----FPG-LLDGEHSFELEPLG--DGGTRFVHRE--TFSG--LLAPLVLLGLGRDLRAGFEAMNEALKAR 139 (141)
T ss_pred EEEecCC----CCc-EeeEEEEEEEEEcC--CCcEEEEEee--EEEE--EEhHHhhhhhHHHHhHhHHHHHHHHHHh
Confidence 3332221 111 14567788888875 4789876653 4433 2222333334445555566666666554
No 241
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=20.33 E-value=1e+03 Score=25.03 Aligned_cols=109 Identities=7% Similarity=0.117 Sum_probs=60.2
Q ss_pred ccccCCCHHHHhhhccCchHHHHHHHHcCCcceeecCcccCCCCceEEEEEEEe-ccccc-CCC-ceeceEEEEee-cCC
Q 003874 623 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF-NRHVS-IFG-GEVTCTQQKSP-LAS 698 (790)
Q Consensus 623 ~~~~p~s~~~lf~lF~~~~f~~~~~~~~g~~d~~~~~W~~~~~~~~~R~~sY~~-n~~i~-~~~-~~vt~~Q~~~~-~~~ 698 (790)
..+++++++.+++++.|.+...++.......++ =.. ...+ .+ + |.. +.|.. |.. -.+........ ..+
T Consensus 86 e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~v--Ie~--id~~--~~-v-Y~v~~~p~~~pvs~RDfV~~~s~~~~~~~ 157 (240)
T cd08913 86 EMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCEL--VQQ--VDED--DA-I-YHVTSPSLSGHGKPQDFVILASRRKPCDN 157 (240)
T ss_pred EEEEcCCHHHHHHHHhChhhhhhhHhhccEEEE--EEe--cCCC--cE-E-EEEecCCCCCCCCCCeEEEEEEEEeccCC
Confidence 356799999999977777766666554432211 111 1111 23 3 433 33332 211 12322222222 234
Q ss_pred CCcEEEE-EEEecCCCCCCCce----EEEEEEEEEecCCCCCccEEEE
Q 003874 699 GEGWIVN-EVMSLHDVPFDDHF----RVHFRYEIEKSPLAHNACKCAI 741 (790)
Q Consensus 699 ~~~~vv~-~~~t~~dVPygd~F----~v~~ry~i~~~~~~~~~c~l~V 741 (790)
+..|+|. .....|++|=-.-| .+...|+|++.+ +++|+|.-
T Consensus 158 g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~--~~~t~vtY 203 (240)
T cd08913 158 GDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEES--DQLTKVSY 203 (240)
T ss_pred CccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECC--CCcEEEEE
Confidence 4467554 66667888855544 477889999877 68898844
Done!