RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 003875
(790 letters)
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 461 bits (1187), Expect = e-151
Identities = 181/433 (41%), Positives = 268/433 (61%), Gaps = 16/433 (3%)
Query: 363 EELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEF 422
+ + DV + + + + + MA+LC+ GSHAVNGVA IHSEI+ +F +F
Sbjct: 401 NRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKDF 460
Query: 423 YKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDL 482
Y+L P KFQNKTNG+TPRRW+ CNP L+ I+ +G E+++++ +L +L + D+E
Sbjct: 461 YELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIG-EEYISDLDQLRKLLSYVDDEAF 519
Query: 483 QSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKM 542
K+ NK+K ++++ + ++P+++FD+QVKRIHEYKRQL+N L ++ Y ++
Sbjct: 520 IRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRI 579
Query: 543 KEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVP 602
K+ VPR + GGKA Y AK I+K IT +G VNHDP +GD L+VIF+
Sbjct: 580 KKEPNK----FVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLE 635
Query: 603 DYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEE 662
+Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEE
Sbjct: 636 NYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEE 695
Query: 663 NFFLFGARAHEIAGLRKE--RSEGKFVPDARFEEVKKFVKSGVFGSYNYD---ELMGSLE 717
NFF+FG R ++ L + ++ + ++ + + SG F D +++ L
Sbjct: 696 NFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLM 755
Query: 718 GNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEY 777
+ D F V D+ Y++CQE+V Y + + WTRM I N A S KFSSDRTI +Y
Sbjct: 756 HH------DRFKVFADYEEYVKCQERVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQY 809
Query: 778 ARDIWNIIPVELP 790
AR+IW + P
Sbjct: 810 AREIWGVEPSRQR 822
Score = 288 bits (739), Expect = 3e-86
Identities = 129/284 (45%), Positives = 183/284 (64%), Gaps = 8/284 (2%)
Query: 1 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 60
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 136 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 195
Query: 61 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 120
S + W+ + + A+ YD P+PGY+ +RLWS DF+L FN G + +
Sbjct: 196 EHTSQ-GAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWS-AKAPNDFNLKDFNVGGYIQ 253
Query: 121 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 175
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 254 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 313
Query: 176 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEAL 235
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNHTVLPEAL
Sbjct: 314 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEAL 373
Query: 236 EKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEK 279
E+W L++ LLPRH++II I++ ++ + + + D D L +
Sbjct: 374 ERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFP-GDVDRLRR 416
>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 876
Score = 454 bits (1170), Expect = e-148
Identities = 193/499 (38%), Positives = 285/499 (57%), Gaps = 31/499 (6%)
Query: 318 CDEEGGPVDEELESAQEDGV-----LEEESTDVVPDDELENCDEEGGPVDEELESEQEDD 372
D E E + + + +E+ + P + + ++ +D
Sbjct: 379 VDLEKLDWHEAWDIVTKTFAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFFLED 438
Query: 373 VLEEEKEAEAVQE---------PPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFY 423
V ++ + + P + +RMA L +VGSH VNGV E+HSE++ +F +F
Sbjct: 439 VAKKFPKDVDLLSRISIIEENSPERQIRMAFLAIVGSHKVNGVVELHSELIKTTIFKDFI 498
Query: 424 KLW-PEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLG--TEDWVTNTGKLAELRKFADNE 480
K + P KF N TNG+TPRRW++ NP L+ +++ L TE+++ + KL +L K+ +++
Sbjct: 499 KFYGPSKFVNVTNGITPRRWLKQANPSLAKLISETLNDPTEEYLLDMAKLTQLEKYVEDK 558
Query: 481 DLQSQFRAAKRNNKMKVVSFIKEKT------GYSVSPDAMFDIQVKRIHEYKRQLMNILG 534
+ ++ K NNK+++V IK++ D +FD+QVKRIHEYKRQ +N+ G
Sbjct: 559 EFLKKWNQVKLNNKIRLVDLIKKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFG 618
Query: 535 IVYRYKKMKEM-----SAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 589
I+YRY MK M S E K+ +V IFGGK+ Y AK I+K I V VN+D
Sbjct: 619 IIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNND 678
Query: 590 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLD 649
I LLKV+FV DYNVS AE++IPAS+LS+HISTAG EASGTSNMKF MNG ++IGT+D
Sbjct: 679 ESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVD 738
Query: 650 GANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYNY 709
GANVEI +E+GE+N FLFG + + LR + + V +++SG F N
Sbjct: 739 GANVEITREIGEDNVFLFGNLSENVEELRYNHQYHPQDLPSSLDSVLSYIESGQFSPENP 798
Query: 710 DELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQK-RWTRMSIMNTAGSSKF 768
+E ++ + G DY+LV DF SYL E VD+ + +Q+ W + S+++ A F
Sbjct: 799 NEFKPLVDSIKYHG--DYYLVSDDFESYLATHELVDQEFHNQRSEWLKKSVLSLANVGFF 856
Query: 769 SSDRTIQEYARDIWNIIPV 787
SSDR I+EY+ IWN+ PV
Sbjct: 857 SSDRCIEEYSDTIWNVEPV 875
Score = 319 bits (818), Expect = 6e-97
Identities = 147/284 (51%), Positives = 183/284 (64%), Gaps = 10/284 (3%)
Query: 1 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 60
MAT PAWGYGLRY+YG+F Q+I Q E + WL GNPWEIERN+V PV FYG +
Sbjct: 174 MATEGIPAWGYGLRYEYGIFAQKIIDGYQVETPDYWLNSGNPWEIERNEVQIPVTFYGYV 233
Query: 61 VPGSDGK-----SHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNA 115
GK S WIGGE + AVAYD P+PG+KT NLRLW P+ +FDL+ FN
Sbjct: 234 DRPEGGKTTLSASQWIGGERVLAVAYDFPVPGFKTSNVNNLRLWQAR-PTTEFDLNKFNN 292
Query: 116 GDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANV 175
GD+ + AE I +LYP D +GK LRLKQQY C+ASL DI+ RF+K
Sbjct: 293 GDYKNSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYFWCAASLHDILRRFKKSKR--- 349
Query: 176 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEAL 235
W EFP++VA+Q+NDTHPTL I EL R+L+DL+ L W EAW+I +T AYTNHTV+ EAL
Sbjct: 350 PWTEFPDQVAIQLNDTHPTLAIVELQRVLVDLEKLDWHEAWDIVTKTFAYTNHTVMQEAL 409
Query: 236 EKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEK 279
EKW L LLPRH+EII I+ + + ++ D DLL +
Sbjct: 410 EKWPRRLFGHLLPRHLEIIYDINWFFLEDVAKKFP-KDVDLLSR 452
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
{Escherichia coli [TaxId: 562]}
Length = 796
Score = 439 bits (1131), Expect = e-143
Identities = 186/415 (44%), Positives = 270/415 (65%), Gaps = 14/415 (3%)
Query: 375 EEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKT 434
+E+ A+ + V MANLCVVG AVNGVA +HS++V ++F E+++LWP KF N T
Sbjct: 389 DEKVWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVT 448
Query: 435 NGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNK 494
NG+TPRRWI+ CNP L+++L L ++W + +L L KFAD+ + Q+R K+ NK
Sbjct: 449 NGITPRRWIKQCNPALAALLDKSLQ-KEWANDLDQLINLEKFADDAKFRQQYREIKQANK 507
Query: 495 MKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKF 554
+++ F+K +TG ++P A+FDIQ+KR+HEYKRQ +N+L I+ YK+++E +R
Sbjct: 508 VRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADR---- 563
Query: 555 VPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIP 614
VPRV +FG KA Y AK I+ I V +N+DP +GD LKV+F+PDY VS AE LIP
Sbjct: 564 VPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIP 623
Query: 615 ASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEI 674
A+++S+ ISTAG EASGT NMK A+NG + +GTLDGANVEI ++VGEEN F+FG ++
Sbjct: 624 AADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQV 683
Query: 675 AGLRKER--SEGKFVPDARFEEVKKFVKSGVFG---SYNYDELMGSLEGNEGFGQADYFL 729
+ + D + V K ++SG + + +D+++ S+ G D +L
Sbjct: 684 KAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSI----GKQGGDPYL 739
Query: 730 VGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 784
V DF +Y+E Q++VD Y DQ+ WTR +I+NTA FSSDR+I++Y IW
Sbjct: 740 VMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQA 794
Score = 275 bits (705), Expect = 1e-81
Identities = 115/279 (41%), Positives = 155/279 (55%), Gaps = 9/279 (3%)
Query: 1 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 60
MAT+ A GYGL Y+YGLF+Q Q E +DW PW + V GK+
Sbjct: 126 MATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGKV 185
Query: 61 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 120
DG+ W I A+D+P+ GY+ LRLW FDL+ FN GD +
Sbjct: 186 TK--DGR--WEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATHA-HPFDLTKFNDGDFLR 240
Query: 121 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEF 180
A + NAEK+ +LYP D + EGK LRL QQY C+ S+ DI+ R E
Sbjct: 241 AEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHLA---GRKLHEL 297
Query: 181 PEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSF 240
+ +Q+NDTHPT+ IPEL+R+LID +SW +AW IT +T AYTNHT++PEALE+W
Sbjct: 298 ADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDV 357
Query: 241 ELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEK 279
+L++ LLPRHM+II I+ T+V + D + K
Sbjct: 358 KLVKGLLPRHMQIINEINTRF-KTLVEKTWPGDEKVWAK 395
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 30.3 bits (67), Expect = 0.83
Identities = 29/306 (9%), Positives = 82/306 (26%), Gaps = 27/306 (8%)
Query: 157 SASLQDIIARFEKRSGANV----NWEEFPEKV--AVQMNDTHP-TLCIPELIRILIDLKG 209
D+ R+++ G V + + Q P + D G
Sbjct: 24 EHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAG 83
Query: 210 LSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEY 269
+ ++ T + + +L + + R E + + + E
Sbjct: 84 FNIS--YDNYHSTH------------SEENRQLSELIYSRLKENGFIKNRTISQLYDPEK 129
Query: 270 GT--ADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPD---DELENCDEEGGP 324
G D ++ R E+ ++ + + + ++++ E G
Sbjct: 130 GMFLPDRFVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQ 189
Query: 325 VDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQ 384
+ A G + L+ G + + +E + ++
Sbjct: 190 QWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTA 249
Query: 385 EPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKF-QNKTNGVTPRRWI 443
E + + + + +N + + + K +++ + W+
Sbjct: 250 ELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWL 309
Query: 444 RFCNPD 449
+ D
Sbjct: 310 NHFDAD 315
>d1d4oa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 177
Score = 28.6 bits (64), Expect = 1.8
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 597 KVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCI 643
+I P Y + A+ P ++L + + G ++F ++
Sbjct: 20 SIIITPGYGLCAAKAQYPIADLVKM-----LSEQGK-KVRFGIHPVA 60
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
tremula), thioredoxin H [TaxId: 113636]}
Length = 113
Score = 27.4 bits (60), Expect = 2.6
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 11/103 (10%)
Query: 480 EDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRY 539
+ + F K + K+ VV F T P M + + + + V
Sbjct: 13 DTWKEHFEKGKGSQKLIVVDF----TASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDEL 68
Query: 540 KKMKEMSAVERKAKFVPRVCIF-GGKAFATYV--QAKRIVKFI 579
K + E V + +P GK V + +
Sbjct: 69 KAVAEEWNV----EAMPTFIFLKDGKLVDKTVGADKDGLPTLV 107
>d2b0ja1 a.100.1.11 (A:243-344) 5,10-methenyltetrahydromethanopterin
hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii
[TaxId: 2190]}
Length = 102
Score = 26.7 bits (59), Expect = 4.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 627 MEASGTSNMKFAMNGCILIGTLDGANVEIRQE 658
M+ G +NM+ A++ L+GT D E
Sbjct: 55 MKEKGIANMEEALDPAALLGTADSMCFGPLAE 86
>d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP
{Escherichia coli [TaxId: 562]}
Length = 369
Score = 27.5 bits (59), Expect = 7.6
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 160 LQDIIARFEKRSGANVN---WEEFPEKVAVQM 188
L ++ +FEK + V ++ EK
Sbjct: 20 LAEVGKKFEKDTDPKVTVEHPDKLEEKFPQVA 51
>d1jeya1 b.131.1.1 (A:254-534) Ku70 subunit middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 281
Score = 27.2 bits (60), Expect = 8.2
Identities = 16/150 (10%), Positives = 30/150 (20%), Gaps = 17/150 (11%)
Query: 42 PWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTIN------ 95
++ D+ V Y + + E + V T +
Sbjct: 7 KLKLN-KDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKR 65
Query: 96 -LRLWSTMVPSEDFDLSAFNA-GDHTKAAEALTNAEKI--------CYILYPGDESVEGK 145
S + E + D + +YP + V G
Sbjct: 66 SQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGS 125
Query: 146 VLRLKQQYTLCSASLQDIIARFEKRSGANV 175
C + R+ R
Sbjct: 126 STLFSALLIKCLEKEVAALCRYTPRRNIPP 155
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.397
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,116,205
Number of extensions: 155441
Number of successful extensions: 410
Number of sequences better than 10.0: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 22
Length of query: 790
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 697
Effective length of database: 1,130,706
Effective search space: 788102082
Effective search space used: 788102082
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.1 bits)