BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003876
(790 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 183/773 (23%), Positives = 306/773 (39%), Gaps = 196/773 (25%)
Query: 64 RAKSLISLLTLQEKIQQL-------------------SDNASAIPRLGIPAYEWWSESLH 104
+ ++S LTL+EK++ + + +PR+G+PA+
Sbjct: 3 KVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF-------- 54
Query: 105 GIASNGP-GVNFNGTVSS------VTSFPQVLVSAASFNRSLWSNIGSAVAVEARAMYNL 157
+ ++GP G+ N T + T+FP ++ A+++NR L +G A+ E R Y +
Sbjct: 55 -VLADGPAGLRINPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEVRE-YGV 112
Query: 158 GQAGLTFWAPNINIFRDPRWGRGQETPGEDPMVVSAYAVEFVKSFQGENWKSDDGGIGFG 217
AP +NI R+P GR E EDP++ A FVK Q + G+G
Sbjct: 113 D----VLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQ-------GVG-- 159
Query: 218 FREKRVLKGFGEESDRGDELMLSACCKHLIAYDLEKWGNFSRYSFNAMITEQDTEDTFQP 277
AC KH +A + E +R + +++E+ + +
Sbjct: 160 -----------------------ACIKHFVANNQET----NRMVVDTIVSERALREIYLR 192
Query: 278 PFRSCIEQGKASCIMCSYNQVNGVPACLRGDLFQKA-RNEWGFKGYITSDC--------- 327
F +++ K +M +YN++NG L +K R EWGF+G++ SD
Sbjct: 193 GFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKKVLREEWGFEGFVMSDWYAGDNPVEQ 252
Query: 328 -----DAVATIFEYQNYTKTHEDSAAGVLKADKGKVQEKDIDRALLNLFSVQLRLGLFNG 382
D + YQ T+ ++ + +GK+ E+ +D + N+ V L N
Sbjct: 253 LKAGNDLIMPGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKV-----LVNA 307
Query: 383 DPRKGKYGKLGPDDVCTSEHKKLALDAARQGIVLLKNDKKFLPLNKNAVSSLAIIGPLVN 442
K PD +H K+A +A +G+VLL+N++ LPL++N S +A+ G
Sbjct: 308 PSFKNYRYSNKPD---LEKHAKVAYEAGAEGVVLLRNEEA-LPLSEN--SKIALFG--TG 359
Query: 443 NISQMGGGYTGIPCSPK---SLLRGL---------------EAYVSKTHYASGCH----- 479
I + GG P+ S+L G+ E Y+ K
Sbjct: 360 QIETIKGGTGSGDTHPRYAISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDS 419
Query: 480 -------DVPCN--SDAGFHEAVRIAKKADFVIVVAGLDLTQETEDRDRVS--LLLPGQQ 528
+P N S+ H ++AKK D ++V ++ E DR V L +
Sbjct: 420 WGTIIKPKLPENFLSEKEIH---KLAKKNDVAVIVIS-RISGEGYDRKPVKGDFYLSDDE 475
Query: 529 MSLVTSVAR---TSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGAKALAEII 585
L+ +V+R + VI++L G P++V + IL + G+ + +A+++
Sbjct: 476 TDLIKTVSREFHEQGKKVIVLLNIGSPVEV--VSWRDLVDGILLVWQAGQETGRIVADVL 533
Query: 586 FGDFNPGGRLPMTWYPESFTKVPMNDMNMRADSSRQ--------YPGRSYRFYTGTQV-- 635
G NP G+LP T +P ++ VP + Q Y G YR+Y V
Sbjct: 534 TGRINPSGKLPTT-FPRDYSDVPSWTFPGEPKDNPQKVVYEEDIYVG--YRYYDTFGVEP 590
Query: 636 -YGFGHGLSYTNYSYKFLSAPSELTISASLKAGSDKNILQQTGSRLDYVHIDEVTSCTSL 694
Y FG+GLSYT + Y SD N+ S
Sbjct: 591 AYEFGYGLSYTTFEY------------------SDLNV-----------------SFDGE 615
Query: 695 RFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKE 747
VQ + N G G V ++ + PK P ++L F + + G E
Sbjct: 616 TLRVQYRIENTGGRAGKEVSQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESE 668
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 182/773 (23%), Positives = 305/773 (39%), Gaps = 196/773 (25%)
Query: 64 RAKSLISLLTLQEKIQQL-------------------SDNASAIPRLGIPAYEWWSESLH 104
+ ++S LTL+EK++ + + +PR+G+PA+
Sbjct: 3 KVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF-------- 54
Query: 105 GIASNGP-GVNFNGTVSS------VTSFPQVLVSAASFNRSLWSNIGSAVAVEARAMYNL 157
+ ++GP G+ N T + T+FP ++ A+++NR L +G A+ E R Y +
Sbjct: 55 -VLADGPAGLRINPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEVRE-YGV 112
Query: 158 GQAGLTFWAPNINIFRDPRWGRGQETPGEDPMVVSAYAVEFVKSFQGENWKSDDGGIGFG 217
AP +NI R+P GR E EDP++ A FVK Q + G+G
Sbjct: 113 D----VLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQ-------GVG-- 159
Query: 218 FREKRVLKGFGEESDRGDELMLSACCKHLIAYDLEKWGNFSRYSFNAMITEQDTEDTFQP 277
AC KH +A + E +R + +++E+ + +
Sbjct: 160 -----------------------ACIKHFVANNQET----NRMVVDTIVSERALREIYLR 192
Query: 278 PFRSCIEQGKASCIMCSYNQVNGVPACLRGDLFQKA-RNEWGFKGYITSDC--------- 327
F +++ K +M +YN++NG L +K R EWGF+G++ S
Sbjct: 193 GFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKKVLREEWGFEGFVMSAWYAGDNPVEQ 252
Query: 328 -----DAVATIFEYQNYTKTHEDSAAGVLKADKGKVQEKDIDRALLNLFSVQLRLGLFNG 382
D + YQ T+ ++ + +GK+ E+ +D + N+ V L N
Sbjct: 253 LKAGNDLIMPGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKV-----LVNA 307
Query: 383 DPRKGKYGKLGPDDVCTSEHKKLALDAARQGIVLLKNDKKFLPLNKNAVSSLAIIGPLVN 442
K PD +H K+A +A +G+VLL+N++ LPL++N S +A+ G
Sbjct: 308 PSFKNYRYSNKPD---LEKHAKVAYEAGAEGVVLLRNEEA-LPLSEN--SKIALFG--TG 359
Query: 443 NISQMGGGYTGIPCSPK---SLLRGL---------------EAYVSKTHYASGCH----- 479
I + GG P+ S+L G+ E Y+ K
Sbjct: 360 QIETIKGGTGSGDTHPRYAISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDS 419
Query: 480 -------DVPCN--SDAGFHEAVRIAKKADFVIVVAGLDLTQETEDRDRVS--LLLPGQQ 528
+P N S+ H ++AKK D ++V ++ E DR V L +
Sbjct: 420 WGTIIKPKLPENFLSEKEIH---KLAKKNDVAVIVIS-RISGEGYDRKPVKGDFYLSDDE 475
Query: 529 MSLVTSVAR---TSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGAKALAEII 585
L+ +V+R + VI++L G P++V + IL + G+ + +A+++
Sbjct: 476 TDLIKTVSREFHEQGKKVIVLLNIGSPVEV--VSWRDLVDGILLVWQAGQETGRIVADVL 533
Query: 586 FGDFNPGGRLPMTWYPESFTKVPMNDMNMRADSSRQ--------YPGRSYRFYTGTQV-- 635
G NP G+LP T +P ++ VP + Q Y G YR+Y V
Sbjct: 534 TGRINPSGKLPTT-FPRDYSDVPSWTFPGEPKDNPQKVVYEEDIYVG--YRYYDTFGVEP 590
Query: 636 -YGFGHGLSYTNYSYKFLSAPSELTISASLKAGSDKNILQQTGSRLDYVHIDEVTSCTSL 694
Y FG+GLSYT + Y SD N+ S
Sbjct: 591 AYEFGYGLSYTTFEY------------------SDLNV-----------------SFDGE 615
Query: 695 RFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKE 747
VQ + N G G V ++ + PK P ++L F + + G E
Sbjct: 616 TLRVQYRIENTGGRAGKEVSQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESE 668
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 126 bits (316), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 159/635 (25%), Positives = 256/635 (40%), Gaps = 128/635 (20%)
Query: 50 DSYPFCNTSLSISTRAKSLISLLTLQEKIQQLS-------------DN--------ASAI 88
D + + + + R L+ +TL EKI Q++ DN ++
Sbjct: 1 DYVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSV 60
Query: 89 PRLGIPAYEWWS----------------ESLHGIASNGPGVNFNGTVSSVTSFPQVLVSA 132
PR G A EW ++GI + V+ V T FP +
Sbjct: 61 PRKGATAKEWQDMVDGFQKACMSTRLGIPMIYGIDA----VHGQNNVYGATIFPHNVGLG 116
Query: 133 ASFNRSLWSNIGSAVAVEARAMYNLGQAGLTF-WAPNINIFRDPRWGRGQETPGEDPMVV 191
A+ + L IG A A+E RA G+ + +AP I + RDPRWGR E+ ED +V
Sbjct: 117 ATRDPYLVKRIGEATALEVRA------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIV 170
Query: 192 SAYAVEFVKSFQGENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYDL 251
+ E + QG+ K G+ F + +V +AC KH +
Sbjct: 171 QSM-TELIPGLQGDVPKDFTSGMPFVAGKNKV----------------AACAKHFVGDGG 213
Query: 252 EKWGNFSRYSFNAMITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQVNGVPACLRGDLFQ 311
G N +I + + P +++ +++G S +M SY+ NGV DL
Sbjct: 214 TVDGINEN---NTIINREGLMNIHMPAYKNAMDKG-VSTVMISYSSWNGVKMHANQDLVT 269
Query: 312 K-ARNEWGFKGYITSDCDAVATIFEYQNYTKTHEDSAAGVLKADK--------------- 355
++ FKG++ SD + + I ++ A+ + D
Sbjct: 270 GYLKDTLKFKGFVISDWEGIDRITTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILT 329
Query: 356 -----GKVQEKDIDRALLNLFSVQLRLGLFN---GDPRKGKYGKLGPDDVCTSEHKKLAL 407
G + ID A+ + V+ +GLF DP + +LG EH+ LA
Sbjct: 330 GHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAE--QLG-----KQEHRDLAR 382
Query: 408 DAARQGIVLLKN-----DKKFLPLNKNAVSSLAIIGPLVNNISQMGGGY-------TGIP 455
+AAR+ +VLLKN D LPL K A + + G +N+ GG+ TG
Sbjct: 383 EAARKSLVLLKNGKTSTDAPLLPLPKKA-PKILVAGSHADNLGYQCGGWTIEWQGDTGRT 441
Query: 456 CSPKSLLRGLEAYVSKTHYASGCHDVPCNSDAGFHEAVRIAKKADFVIVVAGLDLTQETE 515
++L ++A V + N DA F ++ + + IV G ET+
Sbjct: 442 TVGTTILEAVKAAVDPSTVVVFAE----NPDAEFVKSGGFS----YAIVAVGEHPYTETK 493
Query: 516 DRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYPGE 575
D ++L +P +S V +V + +L+ G P+ V A S W+ PG
Sbjct: 494 G-DNLNLTIPEPGLSTVQAVCGGVRCATVLI--SGRPVVVQPLLAASDALVAAWL--PGS 548
Query: 576 AGAKALAEIIFGDFNPGGRLPMTWYPESFTKVPMN 610
G + + + +FGDF GRLP TW+ +S ++PMN
Sbjct: 549 EG-QGVTDALFGDFGFTGRLPRTWF-KSVDQLPMN 581
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 159/635 (25%), Positives = 256/635 (40%), Gaps = 128/635 (20%)
Query: 50 DSYPFCNTSLSISTRAKSLISLLTLQEKIQQLS-------------DN--------ASAI 88
D + + + + R L+ +TL EKI Q++ DN ++
Sbjct: 1 DYVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSV 60
Query: 89 PRLGIPAYEWWS----------------ESLHGIASNGPGVNFNGTVSSVTSFPQVLVSA 132
PR G A EW ++GI + V+ V T FP +
Sbjct: 61 PRKGATAKEWQDMVDGFQKACMSTRLGIPMIYGIDA----VHGQNNVYGATIFPHNVGLG 116
Query: 133 ASFNRSLWSNIGSAVAVEARAMYNLGQAGLTF-WAPNINIFRDPRWGRGQETPGEDPMVV 191
A+ + L IG A A+E RA G+ + +AP I + RDPRWGR E+ ED +V
Sbjct: 117 ATRDPYLVKRIGEATALEVRA------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIV 170
Query: 192 SAYAVEFVKSFQGENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYDL 251
+ E + QG+ K G+ F + +V +AC KH +
Sbjct: 171 QSM-TELIPGLQGDVPKDFTSGMPFVAGKNKV----------------AACAKHFVGDGG 213
Query: 252 EKWGNFSRYSFNAMITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQVNGVPACLRGDLFQ 311
G N +I + + P +++ +++G S +M SY+ NGV DL
Sbjct: 214 TVDGINEN---NTIINREGLMNIHMPAYKNAMDKG-VSTVMISYSSWNGVKMHANQDLVT 269
Query: 312 K-ARNEWGFKGYITSDCDAVATIFEYQNYTKTHEDSAAGVLKADK--------------- 355
++ FKG++ SD + + I ++ A+ + D
Sbjct: 270 GYLKDTLKFKGFVISDWEGIDRITTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILT 329
Query: 356 -----GKVQEKDIDRALLNLFSVQLRLGLFN---GDPRKGKYGKLGPDDVCTSEHKKLAL 407
G + ID A+ + V+ +GLF DP + +LG EH+ LA
Sbjct: 330 GHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAE--QLG-----KQEHRDLAR 382
Query: 408 DAARQGIVLLKN-----DKKFLPLNKNAVSSLAIIGPLVNNISQMGGGY-------TGIP 455
+AAR+ +VLLKN D LPL K A + + G +N+ GG+ TG
Sbjct: 383 EAARKSLVLLKNGKTSTDAPLLPLPKKA-PKILVAGSHADNLGYQCGGWTIEWQGDTGRT 441
Query: 456 CSPKSLLRGLEAYVSKTHYASGCHDVPCNSDAGFHEAVRIAKKADFVIVVAGLDLTQETE 515
++L ++A V + N DA F ++ + + IV G ET+
Sbjct: 442 TVGTTILEAVKAAVDPSTVVVFAE----NPDAEFVKSGGFS----YAIVAVGEHPYTETK 493
Query: 516 DRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYPGE 575
D ++L +P +S V +V + +L+ G P+ V A S W+ PG
Sbjct: 494 G-DNLNLTIPEPGLSTVQAVCGGVRCATVLI--SGRPVVVQPLLAASDALVAAWL--PGS 548
Query: 576 AGAKALAEIIFGDFNPGGRLPMTWYPESFTKVPMN 610
G + + + +FGDF GRLP TW+ +S ++PMN
Sbjct: 549 EG-QGVTDALFGDFGFTGRLPRTWF-KSVDQLPMN 581
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 146/616 (23%), Positives = 245/616 (39%), Gaps = 81/616 (13%)
Query: 204 GENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYDLEKWGNFSRYSFN 263
G NW+ GFG G+ + + + A KH I + E +R + +
Sbjct: 124 GRNWE------GFGVDPYLTGIAMGQTINGIQSVGVQATAKHYILNEQE----LNRETIS 173
Query: 264 AMITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQVNGVPACLRGDLFQKA-RNEWGFKGY 322
+ ++ + + PF ++ AS +MCSYN+VN AC Q +++ GF GY
Sbjct: 174 SNPDDRTLHELYTWPFADAVQANVAS-VMCSYNKVNTTWACEDQYTLQTVLKDQLGFPGY 232
Query: 323 ITSDCDAVATIFEYQN-----------YTKTHEDSAAGVLKA-DKGKVQEKDIDRALLNL 370
+ +D +A T + N + + + A + +V +D + +
Sbjct: 233 VMTDWNAQHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSNQVPTSRVDDMVTRI 292
Query: 371 FSVQLRLGLFNGDPRKGKYGKLGPDDVCTSEHKKLALDAARQGIVLLKNDKKFLPLNKNA 430
+ G + Y HK AR GIVLLKND LPL K A
Sbjct: 293 LAAWYLTGQ-----DQAGYPSFNISRNVQGNHKTNVRAIARDGIVLLKNDANILPLKKPA 347
Query: 431 ----VSSLAIIGPLVNNI----------SQMGGGYTGIPCSPKSLLRGLEAYVSKTHYAS 476
V S AIIG N +G G+ + + +A ++ +
Sbjct: 348 SIAVVGSAAIIGNHARNSPSCNDKGCDDGALGMGWGSGAVNYPYFVAPYDAINTRAS-SQ 406
Query: 477 GCHDVPCNSDAGFHEAVRIAKKADFVIVVAGLD-----LTQETEDRDRVSLLLPGQQMSL 531
G N+D A+ D IV D +T E DR +L +L
Sbjct: 407 GTQVTLSNTD-NTSSGASAARGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGNAL 465
Query: 532 VTSVARTSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGAKALAEIIFGDFNP 591
V +VA + VI+V+ G + + A Q+ +++W G P + AL ++++GD +P
Sbjct: 466 VQAVAGANSN-VIVVVHSVGAIILEQILALPQVKAVVWAGLPSQESGNALVDVLWGDVSP 524
Query: 592 GGRLPMTWYPESFTKVPMNDMNMR-----ADSSRQYPGRSYRFYTGTQV---YGFGHGLS 643
G+L T K P ND N R +DS + Y+ + + Y FG+GLS
Sbjct: 525 SGKLVYT-----IAKSP-NDYNTRIVSGGSDSFSEGLFIDYKHFDDANITPRYEFGYGLS 578
Query: 644 YTNYSYKFLSAPSELTISASLKAGSDKNILQQTGSRLDYVHIDEVTSCTSLRFHVQISVT 703
YT ++Y S L++ ++ K+G + G + ++ VT + +
Sbjct: 579 YTKFNY------SRLSVLSTAKSGPATGAVVPGGPSDLFQNVATVT----------VDIA 622
Query: 704 NAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANK 763
N+G V G+ V L+ P + TP KQL GF +++ S +F + +
Sbjct: 623 NSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPGQSGTATFNIRRRDLSYWDTA 682
Query: 764 HGRRILPLGNHVLMVG 779
+ ++P G+ + VG
Sbjct: 683 SQKWVVPSGSFGISVG 698
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 146/616 (23%), Positives = 245/616 (39%), Gaps = 81/616 (13%)
Query: 204 GENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYDLEKWGNFSRYSFN 263
G NW+ GFG G+ + + + A KH I + E +R + +
Sbjct: 125 GRNWE------GFGVDPYLTGIAMGQTINGIQSVGVQATAKHYILNEQE----LNRETIS 174
Query: 264 AMITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQVNGVPACLRGDLFQKA-RNEWGFKGY 322
+ ++ + + PF ++ AS +MCSYN+VN AC Q +++ GF GY
Sbjct: 175 SNPDDRTLHELYTWPFADAVQANVAS-VMCSYNKVNTTWACEDQYTLQTVLKDQLGFPGY 233
Query: 323 ITSDCDAVATIFEYQN-----------YTKTHEDSAAGVLKA-DKGKVQEKDIDRALLNL 370
+ +D +A T + N + + + A + +V +D + +
Sbjct: 234 VMTDWNAQHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSNQVPTSRVDDMVTRI 293
Query: 371 FSVQLRLGLFNGDPRKGKYGKLGPDDVCTSEHKKLALDAARQGIVLLKNDKKFLPLNKNA 430
+ G + Y HK AR GIVLLKND LPL K A
Sbjct: 294 LAAWYLTGQ-----DQAGYPSFNISRNVQGNHKTNVRAIARDGIVLLKNDANILPLKKPA 348
Query: 431 ----VSSLAIIGPLVNNI----------SQMGGGYTGIPCSPKSLLRGLEAYVSKTHYAS 476
V S AIIG N +G G+ + + +A ++ +
Sbjct: 349 SIAVVGSAAIIGNHARNSPSCNDKGCDDGALGMGWGSGAVNYPYFVAPYDAINTRAS-SQ 407
Query: 477 GCHDVPCNSDAGFHEAVRIAKKADFVIVVAGLD-----LTQETEDRDRVSLLLPGQQMSL 531
G N+D A+ D IV D +T E DR +L +L
Sbjct: 408 GTQVTLSNTD-NTSSGASAARGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGNAL 466
Query: 532 VTSVARTSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGAKALAEIIFGDFNP 591
V +VA + VI+V+ G + + A Q+ +++W G P + AL ++++GD +P
Sbjct: 467 VQAVAGANSN-VIVVVHSVGAIILEQILALPQVKAVVWAGLPSQESGNALVDVLWGDVSP 525
Query: 592 GGRLPMTWYPESFTKVPMNDMNMR-----ADSSRQYPGRSYRFYTGTQV---YGFGHGLS 643
G+L T K P ND N R +DS + Y+ + + Y FG+GLS
Sbjct: 526 SGKLVYT-----IAKSP-NDYNTRIVSGGSDSFSEGLFIDYKHFDDANITPRYEFGYGLS 579
Query: 644 YTNYSYKFLSAPSELTISASLKAGSDKNILQQTGSRLDYVHIDEVTSCTSLRFHVQISVT 703
YT ++Y S L++ ++ K+G + G + ++ VT + +
Sbjct: 580 YTKFNY------SRLSVLSTAKSGPATGAVVPGGPSDLFQNVATVT----------VDIA 623
Query: 704 NAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANK 763
N+G V G+ V L+ P + TP KQL GF +++ S +F + +
Sbjct: 624 NSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPGQSGTATFNIRRRDLSYWDTA 683
Query: 764 HGRRILPLGNHVLMVG 779
+ ++P G+ + VG
Sbjct: 684 SQKWVVPSGSFGISVG 699
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 147/604 (24%), Positives = 241/604 (39%), Gaps = 128/604 (21%)
Query: 86 SAIPRLGIPAYEWWSESLHGIASNGPGVNFNGTVSSVTSFPQVLVSAASFNRSLWSNIGS 145
S + + IP W ++++HG + V T FP + A+ + L IG
Sbjct: 96 STLDGIAIPTV-WGTDAMHG----------HSNVYGATLFPHNIGLGAARDTDLIKRIGQ 144
Query: 146 AVAVEARAMYNLGQAGLTF-WAPNINIFRDPRWGRGQETPGEDPMVVSAYAVEFVKSFQG 204
A A E A G+ + +AP + + RD RWGR E+ EDP +V YA E V QG
Sbjct: 145 ATAKEVAA------TGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQG 198
Query: 205 ENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYDLEKWGNFSRYSFNA 264
+ +G F LKG S+R A KH + + G R N
Sbjct: 199 D--------VGADF-----LKG----SNR------IATAKHFVGDGGTERG-VDR--GNT 232
Query: 265 MITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQVNGVPACLRGD---LFQKARNEWGFKG 321
+I E+ D + S I QG S +M S+N NG + GD L +N+ GF G
Sbjct: 233 LIDEKGLRDIHSAGYFSAINQGVQS-VMASFNSWNG--KRVHGDKHLLTDVLKNQLGFDG 289
Query: 322 YITSD---------CD----------AVATIFEYQNYTKTHEDSAAGVLKADKGKVQEKD 362
++ SD CD V I +++ + ++ V + G + E
Sbjct: 290 FVVSDWNAHKFVEGCDLEQCAQAINAGVDVIMVPEHFEAFYHNT---VKQVKAGVIAESR 346
Query: 363 IDRALLNLFSVQLRLGLFNGDPRKGKYGKLGPDDVCTSEHKKLALDAARQGIVLLKNDKK 422
I+ A+ ++R G+F + P + +EH+ LA +A R+ +VLLKN++
Sbjct: 347 INDAVRRFLRAKIRWGVFTKSKPSARPESQHPQWLGAAEHRTLAREAVRKSLVLLKNNES 406
Query: 423 FLPLNKNAVSSLAIIGPLVNNISQMGGGY-----------TGIPCSPKSLLRGLEAYVSK 471
LP+ A S + + G N I+ GG+ + P + S+ GL++ V+K
Sbjct: 407 ILPI--KASSRILVAGKGANAINMQAGGWSVSWQGTDNTNSDFP-NATSIFSGLQSQVTK 463
Query: 472 THYASGCHDVPCNSDAGFHEAVRIAKKADFVIVVAGLDLTQET-EDRDRVSLLLPGQQMS 530
E+ K D IVV G + E D + + +
Sbjct: 464 -----------AGGKITLSESGEYTSKPDVAIVVIGEEPYAEWFGDIELLEFQHETKHAL 512
Query: 531 LVTSVARTSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGAKALAEIIFGD-- 588
+ + PV+ V G PL V+ S W+ PG G + +A+++ +
Sbjct: 513 ALLKQLKADNIPVVTVFLSGRPLWVNKELNASDAFVAAWL--PGSEG-EGVADVLLTNKQ 569
Query: 589 ----FNPGGRLPMTW--YPESFTKVPMNDMNMRADSSRQYPGRSYRFYTGTQVYGFGHGL 642
F+ G+L +W Y + FT + +ND + ++ +G+GL
Sbjct: 570 GKTQFDFTGKLSFSWPKYDDQFT-LNLNDADYDP------------------LFAYGYGL 610
Query: 643 SYTN 646
+Y +
Sbjct: 611 TYQD 614
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 147/604 (24%), Positives = 241/604 (39%), Gaps = 128/604 (21%)
Query: 86 SAIPRLGIPAYEWWSESLHGIASNGPGVNFNGTVSSVTSFPQVLVSAASFNRSLWSNIGS 145
S + + IP W ++++HG + V T FP + A+ + L IG
Sbjct: 96 STLDGIAIPTV-WGTDAMHG----------HSNVYGATLFPHNIGLGAARDTDLIKRIGQ 144
Query: 146 AVAVEARAMYNLGQAGLTF-WAPNINIFRDPRWGRGQETPGEDPMVVSAYAVEFVKSFQG 204
A A E A G+ + +AP + + RD RWGR E+ EDP +V YA E V QG
Sbjct: 145 ATAKEVAA------TGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQG 198
Query: 205 ENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYDLEKWGNFSRYSFNA 264
+ +G F LKG S+R A KH + + G R N
Sbjct: 199 D--------VGADF-----LKG----SNR------IATAKHFVGDGGTERG-VDR--GNT 232
Query: 265 MITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQVNGVPACLRGD---LFQKARNEWGFKG 321
+I E+ D + S I QG S +M S+N NG + GD L +N+ GF G
Sbjct: 233 LIDEKGLRDIHSAGYFSAINQGVQS-VMASFNSWNG--KRVHGDKHLLTDVLKNQLGFDG 289
Query: 322 YITSD---------CD----------AVATIFEYQNYTKTHEDSAAGVLKADKGKVQEKD 362
++ SD CD V I +++ + ++ V + G + E
Sbjct: 290 FVVSDWNAHKFVEGCDLEQCAQAINAGVDVIMVPEHFEAFYHNT---VKQVKAGVIAESR 346
Query: 363 IDRALLNLFSVQLRLGLFNGDPRKGKYGKLGPDDVCTSEHKKLALDAARQGIVLLKNDKK 422
I+ A+ ++R G+F + P + +EH+ LA +A R+ +VLLKN++
Sbjct: 347 INDAVRRFLRAKIRWGVFTKSKPSARPESQHPQWLGAAEHRTLAREAVRKSLVLLKNNES 406
Query: 423 FLPLNKNAVSSLAIIGPLVNNISQMGGGY-----------TGIPCSPKSLLRGLEAYVSK 471
LP+ A S + + G N I+ GG+ + P + S+ GL++ V+K
Sbjct: 407 ILPI--KASSRILVAGKGANAINMQAGGWSVSWQGTDNTNSDFP-NATSIFSGLQSQVTK 463
Query: 472 THYASGCHDVPCNSDAGFHEAVRIAKKADFVIVVAGLDLTQET-EDRDRVSLLLPGQQMS 530
E+ K D IVV G + E D + + +
Sbjct: 464 -----------AGGKITLSESGEYTSKPDVAIVVIGEEPYAEWFGDIELLEFQHETKHAL 512
Query: 531 LVTSVARTSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGAKALAEIIFGD-- 588
+ + PV+ V G PL V+ S W+ PG G + +A+++ +
Sbjct: 513 ALLKQLKADNIPVVTVFLSGRPLWVNKELNASDAFVAAWL--PGSEG-EGVADVLLTNKQ 569
Query: 589 ----FNPGGRLPMTW--YPESFTKVPMNDMNMRADSSRQYPGRSYRFYTGTQVYGFGHGL 642
F+ G+L +W Y + FT + +ND + ++ +G+GL
Sbjct: 570 GKTQFDFTGKLSFSWPKYDDQFT-LNLNDADYDP------------------LFAYGYGL 610
Query: 643 SYTN 646
+Y +
Sbjct: 611 TYQD 614
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 110/410 (26%), Positives = 168/410 (40%), Gaps = 93/410 (22%)
Query: 62 STRAKSLISLLTLQEKI----------QQLSDNASAIPRLGIPAYEWWSESLHGIASNGP 111
++RA L++ +TL EKI +Q +PRLGIP A++GP
Sbjct: 51 TSRAAELVAQMTLDEKISFVHWALDPDRQNVGYLPGVPRLGIPELR---------AADGP 101
Query: 112 -GVNFNGTVSSVTSFPQVLVSAASFNRSLWSNIGSAVAVEARAMYNLGQAGLTFWAPNIN 170
G+ G + T+ P + A++F+ ++ + G + + RA+ G P +N
Sbjct: 102 NGIRLVG--QTATALPAPVALASTFDDTMADSYGKVMGRDGRALNQDMVLG-----PMMN 154
Query: 171 IFRDPRWGRGQETPGEDPMVVSAYAVEFVKSFQGENWKSDDGGIGFGFREKRVLKGFGEE 230
R P GR ET EDP+V S AV +K QG
Sbjct: 155 NIRVPHGGRNYETFSEDPLVSSRTAVAQIKGIQGAG------------------------ 190
Query: 231 SDRGDELMLSACCKHLIAYDLEKWGNFSRYSFNAMITEQDTEDTFQPPFRSCIEQGKASC 290
L KH A + E +R+S NA + EQ + P F + + G AS
Sbjct: 191 --------LMTTAKHFAANNQEN----NRFSVNANVDEQTLREIEFPAFEASSKAGAAS- 237
Query: 291 IMCSYNQVNGVPACLRGDLFQKA-RNEWGFKGYITSD------CDAVATIFEYQNYTKTH 343
MC+YN +NG P+C +L R +WGF+G++ SD DA+ + + +
Sbjct: 238 FMCAYNGLNGKPSCGNDELLNNVLRTQWGFQGWVMSDWLATPGTDAITKGLDQEMGVELP 297
Query: 344 EDSAAG-----------VLKAD--KGKVQEKDIDRALLNLFSVQLRLGLFNGDPR-KGKY 389
D G LK G V E + R+ + + GL P + +
Sbjct: 298 GDVPKGEPSPPAKFFGEALKTAVLNGTVPEAAVTRSAERIVGQMEKFGLLLATPAPRPER 357
Query: 390 GKLGPDDVCTSEHKKLALDAARQGIVLLKNDKKFLPLNKNAVSSLAIIGP 439
K G V +K+A G VLL+N+ + LPL +A S+A+IGP
Sbjct: 358 DKAGAQAVS----RKVA----ENGAVLLRNEGQALPLAGDAGKSIAVIGP 399
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 124/277 (44%), Gaps = 64/277 (23%)
Query: 493 VRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGP 552
V+ A+KA +V A D TE DR +L LPG Q L+++VA + ++++ TG
Sbjct: 560 VKSARKARTAVVFAYDD---GTEGVDRPNLSLPGTQDKLISAVADANPNTIVVLNTGSSV 616
Query: 553 LDVSFAEADSQISSILWIGYPGEAGAKALAEIIFGDFNPGGRLPMTWYPESFTKVPMNDM 612
L S+ ++L + YPG+AGA+A A +++GD NP G+L + +P + +
Sbjct: 617 LMPWL----SKTRAVLDMWYPGQAGAEATAALLYGDVNPSGKLTQS-FPAA------ENQ 665
Query: 613 NMRADSSRQYPG------------RSYRFYTGTQV---YGFGHGLSYTNYSYKFLSAPSE 657
+ A YPG YR++ V + FGHGLSYT+++ SAP+
Sbjct: 666 HAVAGDPTSYPGVDNQQTYREGIHVGYRWFDKENVKPLFPFGHGLSYTSFTQ---SAPT- 721
Query: 658 LTISASLKAGSDKNILQQTGSRLDYVHIDEVTSCTSLRFHVQISVTNAGDVDGSHVVMLF 717
V ++ V ++V N+G G VV +
Sbjct: 722 ------------------------------VVRTSTGGLKVTVTVRNSGKRAGQEVVQAY 751
Query: 718 -ARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVD 753
P V+ +K+L+G+ +V A +K ++ VD
Sbjct: 752 LGASPNVTAPQAKKKLVGYTKVSLAAGEAKTVTVNVD 788
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 104/406 (25%), Positives = 156/406 (38%), Gaps = 78/406 (19%)
Query: 66 KSLISLLTLQEKIQQLSD----NASAIPRLGIPAYEWWSESLHGIASNGP----GVNFNG 117
+ L+S L EKI LS + I RLGIPA S+GP G F
Sbjct: 7 EQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVR---------VSDGPNGIRGTKFFD 57
Query: 118 TVSSVTSFPQVLVSAASFNRSLWSNIGSAVAVEARAMYNLGQAGLTFWAPNINIFRDPRW 177
V S FP A++F+R L G +A E+ + + P N+ R P
Sbjct: 58 GVPS-GCFPNGTGLASTFDRDLLETAGKLMAKES-----IAKNAAVILGPTTNMQRGPLG 111
Query: 178 GRGQETPGEDPMVVSAYAVEFVKSFQGENWKSDDGGIGFGFREKRVLKGFGEESDRGDEL 237
GRG E+ EDP + VK QGE
Sbjct: 112 GRGFESFSEDPYLAGMATSSVVKGMQGEG------------------------------- 140
Query: 238 MLSACCKHLIAYDLEKWGNFSRYSFNAMITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQ 297
++A KH + DLE R+S N++++E+ + + PFR ++ CIM +YN+
Sbjct: 141 -IAATVKHFVCNDLED----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNK 195
Query: 298 VNGVPACLRGD--LFQKARNEWGFKGYITSDCDAVATI---------FEYQNYTKTHEDS 346
VNG C + L R+EW + G + SD T E+ T+ +
Sbjct: 196 VNG-EHCSQSKKLLIDILRDEWKWDGMLMSDWFGTYTTAAAIKNGLDIEFPGPTRWRTRA 254
Query: 347 AAGVLKADKGKVQEKDIDRALLNLFSVQLRLGLFNGDPRKGKYGKLGPDDVC--TSEHKK 404
+ ++ +D+D + + + + + K + GP+ T E
Sbjct: 255 LVSHSLNSREQITTEDVDDRVRQVLKM---IKFVVDNLEKTGIVENGPESTSNNTKETSD 311
Query: 405 LALDAARQGIVLLKNDKKFLPLNKNAVSSLAIIGPLVNNISQMGGG 450
L A IVLLKN LPL K ++ +IGP + GGG
Sbjct: 312 LLRKIAADSIVLLKNKNNILPLKKE--DNIIVIGPNAKAKTSSGGG 355
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 130/306 (42%), Gaps = 50/306 (16%)
Query: 483 CNSDAGFHEAVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRP 542
+ D A +A K D +++ GL+ ETE DR ++ LP + LV +V + +
Sbjct: 558 IDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNT 617
Query: 543 VILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGAKALAEIIFGDFNPGGRLPMTWYPE 602
VI V G P++ + E D+ W Y G A+A++++GD P G+L ++W P
Sbjct: 618 VI-VNQSGTPVEFPWLE-DANALVQAW--YGGNELGNAIADVLYGDVVPNGKLSLSW-PF 672
Query: 603 SFTKVPMNDMNMRADSSRQYPGRS----YRFYTGTQ---VYGFGHGLSYTNYSYKFLSAP 655
P +N + + R G YR+Y Q + FG+GLSYT +
Sbjct: 673 KLQDNPAF-LNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTF-------- 723
Query: 656 SELTISASLKAGSDKNILQQTGSRLDYVHIDEVTSCTSLRFHVQISVTNAGD-VDGSHVV 714
EL IS K DK + + V N GD GS VV
Sbjct: 724 -ELDIS-DFKVTDDK-------------------------IAISVDVKNTGDKFAGSEVV 756
Query: 715 MLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANKH-GRRILPLGN 773
++ P K+L GF++VH K ++ ++ + +S N+ G+ + G
Sbjct: 757 QVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVEAGE 816
Query: 774 HVLMVG 779
+++ VG
Sbjct: 817 YLVSVG 822
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 100/395 (25%), Positives = 148/395 (37%), Gaps = 78/395 (19%)
Query: 66 KSLISLLTLQEKIQQLSD----NASAIPRLGIPAYEWWSESLHGIASNGP----GVNFNG 117
+ L+S L EKI LS + I RLGIPA S+GP G F
Sbjct: 7 EQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVR---------VSDGPNGIRGTKFFD 57
Query: 118 TVSSVTSFPQVLVSAASFNRSLWSNIGSAVAVEARAMYNLGQAGLTFWAPNINIFRDPRW 177
V S FP A++F+R L G A E+ + + P N R P
Sbjct: 58 GVPS-GCFPNGTGLASTFDRDLLETAGKLXAKES-----IAKNAAVILGPTTNXQRGPLG 111
Query: 178 GRGQETPGEDPMVVSAYAVEFVKSFQGENWKSDDGGIGFGFREKRVLKGFGEESDRGDEL 237
GRG E+ EDP + VK QGE
Sbjct: 112 GRGFESFSEDPYLAGXATSSVVKGXQGEG------------------------------- 140
Query: 238 MLSACCKHLIAYDLEKWGNFSRYSFNAMITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQ 297
++A KH + DLE R+S N++++E+ + + PFR ++ CI +YN+
Sbjct: 141 -IAATVKHFVCNDLED----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIXTAYNK 195
Query: 298 VNGVPACLRGD--LFQKARNEWGFKGYITSDCDAVATI---------FEYQNYTKTHEDS 346
VNG C + L R+EW + G + SD T E+ T+ +
Sbjct: 196 VNG-EHCSQSKKLLIDILRDEWKWDGXLXSDWFGTYTTAAAIKNGLDIEFPGPTRWRTRA 254
Query: 347 AAGVLKADKGKVQEKDIDRALLNLFSVQLRLGLFNGDPRKGKYGKLGPDDVC--TSEHKK 404
+ ++ +D+D + + + + K + GP+ T E
Sbjct: 255 LVSHSLNSREQITTEDVDDRVRQVLK---XIKFVVDNLEKTGIVENGPESTSNNTKETSD 311
Query: 405 LALDAARQGIVLLKNDKKFLPLNKNAVSSLAIIGP 439
L A IVLLKN LPL K ++ +IGP
Sbjct: 312 LLRKIAADSIVLLKNKNNILPLKKE--DNIIVIGP 344
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 129/306 (42%), Gaps = 50/306 (16%)
Query: 483 CNSDAGFHEAVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRP 542
+ D A +A K D +++ GL+ ETE DR + LP + LV +V + +
Sbjct: 558 IDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENXDLPKRTNELVRAVLKANPNT 617
Query: 543 VILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGAKALAEIIFGDFNPGGRLPMTWYPE 602
VI V G P++ + E D+ W Y G A+A++++GD P G+L ++W P
Sbjct: 618 VI-VNQSGTPVEFPWLE-DANALVQAW--YGGNELGNAIADVLYGDVVPNGKLSLSW-PF 672
Query: 603 SFTKVPMNDMNMRADSSRQYPGRS----YRFYTGTQ---VYGFGHGLSYTNYSYKFLSAP 655
P +N + + R G YR+Y Q + FG+GLSYT +
Sbjct: 673 KLQDNPAF-LNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTF-------- 723
Query: 656 SELTISASLKAGSDKNILQQTGSRLDYVHIDEVTSCTSLRFHVQISVTNAGD-VDGSHVV 714
EL IS K DK + + V N GD GS VV
Sbjct: 724 -ELDIS-DFKVTDDK-------------------------IAISVDVKNTGDKFAGSEVV 756
Query: 715 MLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANKH-GRRILPLGN 773
++ P K+L GF++VH K ++ ++ + +S N+ G+ + G
Sbjct: 757 QVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVEAGE 816
Query: 774 HVLMVG 779
+++ VG
Sbjct: 817 YLVSVG 822
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 86/386 (22%), Positives = 144/386 (37%), Gaps = 90/386 (23%)
Query: 278 PFRSCIEQGKASCIMCSYNQ------------VNG----VPACLRGDLFQKA-RNEWGFK 320
PF+ I+ G A +M ++ Q ++G VPA L + R E GF
Sbjct: 254 PFQKAIDAG-ADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFN 312
Query: 321 GYITSDC---DAVATIFEYQN-------------------YTKTHEDSAAGVLKADK--- 355
G I +D A+A F + + E A V++A K
Sbjct: 313 GVIVTDALNMKAIADHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAV 372
Query: 356 --GKVQEKDIDRALLNLFSVQLRLGLF---NGDPRKGKYGKLGPDDVCTSEHKKLALDAA 410
G + E+ I+ ++ + S++++ G++ N D K K K V + +H K A
Sbjct: 373 KNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAK-KIVGSKQHLKAEKKLA 431
Query: 411 RQGIVLLKNDKKFLPLNKNAVSSLAIIGPLVNNISQMGGGYTGI----PCSPKSLLRGLE 466
+ + +LKN++ LP S + I+ P + + + P SL
Sbjct: 432 EKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKRKKIKPVSL----- 486
Query: 467 AYVSKTHYASGCHDVPCNSDAGFHEAVRIAKKADFVI----------VVAGLDLTQETED 516
SK ++AS HE + K+AD++I VV + D
Sbjct: 487 ---SKMNFASQVFKTE-------HE--KQVKEADYIITGSYVVKNDPVVNDGVIDDTISD 534
Query: 517 RDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVS-FAEADSQISSILWIGYPG- 574
+ + + P V A +P +L ++ P D + F EA + I+ + GY
Sbjct: 535 SSKWATVFP----RAVMKAALQHNKPFVL-MSLRNPYDAANFEEAKALIAVYGFKGYANG 589
Query: 575 ---EAGAKALAEIIFGDFNPGGRLPM 597
+ A IFG P G LP+
Sbjct: 590 RYLQPNIPAGVMAIFGQAKPKGTLPV 615
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 85/386 (22%), Positives = 144/386 (37%), Gaps = 90/386 (23%)
Query: 278 PFRSCIEQGKASCIMCSYNQ------------VNG----VPACLRGDLFQKA-RNEWGFK 320
PF+ I+ G A +M ++ Q ++G VPA L + R E GF
Sbjct: 258 PFQKAIDAG-ADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFN 316
Query: 321 GYITSDC---DAVATIFEYQN-------------------YTKTHEDSAAGVLKADK--- 355
G I ++ A+A F + + E A V++A K
Sbjct: 317 GVIVTNALNMKAIADHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAV 376
Query: 356 --GKVQEKDIDRALLNLFSVQLRLGLF---NGDPRKGKYGKLGPDDVCTSEHKKLALDAA 410
G + E+ I+ ++ + S++++ G++ N D K K K V + +H K A
Sbjct: 377 KNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAK-KIVGSKQHLKAEKKLA 435
Query: 411 RQGIVLLKNDKKFLPLNKNAVSSLAIIGPLVNNISQMGGGYTGI----PCSPKSLLRGLE 466
+ + +LKN++ LP S + I+ P + + + P SL
Sbjct: 436 EKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKRKKIKPVSL----- 490
Query: 467 AYVSKTHYASGCHDVPCNSDAGFHEAVRIAKKADFVI----------VVAGLDLTQETED 516
SK ++AS HE + K+AD++I VV + D
Sbjct: 491 ---SKMNFASQVFKTE-------HE--KQVKEADYIITGSYVVKNDPVVNDGVIDDTISD 538
Query: 517 RDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVS-FAEADSQISSILWIGYPG- 574
+ + + P V A +P +L ++ P D + F EA + I+ + GY
Sbjct: 539 SSKWATVFP----RAVMKAALQHNKPFVL-MSLRNPYDAANFEEAKALIAVYGFKGYANG 593
Query: 575 ---EAGAKALAEIIFGDFNPGGRLPM 597
+ A IFG P G LP+
Sbjct: 594 RYLQPNIPAGVMAIFGQAKPKGTLPV 619
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 85/386 (22%), Positives = 144/386 (37%), Gaps = 90/386 (23%)
Query: 278 PFRSCIEQGKASCIMCSYNQ------------VNG----VPACLRGDLFQKA-RNEWGFK 320
PF+ I+ G A +M ++ Q ++G VPA L + R E GF
Sbjct: 228 PFQKAIDAG-ADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFN 286
Query: 321 GYITSDC---DAVATIFEYQN-------------------YTKTHEDSAAGVLKADK--- 355
G I ++ A+A F + + E A V++A K
Sbjct: 287 GVIVTNALNMKAIADHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAV 346
Query: 356 --GKVQEKDIDRALLNLFSVQLRLGLF---NGDPRKGKYGKLGPDDVCTSEHKKLALDAA 410
G + E+ I+ ++ + S++++ G++ N D K K K V + +H K A
Sbjct: 347 KNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAK-KIVGSKQHLKAEKKLA 405
Query: 411 RQGIVLLKNDKKFLPLNKNAVSSLAIIGPLVNNISQMGGGYTGI----PCSPKSLLRGLE 466
+ + +LKN++ LP S + I+ P + + + P SL
Sbjct: 406 EKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKRKKIKPVSL----- 460
Query: 467 AYVSKTHYASGCHDVPCNSDAGFHEAVRIAKKADFVI----------VVAGLDLTQETED 516
SK ++AS HE + K+AD++I VV + D
Sbjct: 461 ---SKMNFASQVFKTE-------HE--KQVKEADYIITGSYVVKNDPVVNDGVIDDTISD 508
Query: 517 RDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVS-FAEADSQISSILWIGYPG- 574
+ + + P V A +P +L ++ P D + F EA + I+ + GY
Sbjct: 509 SSKWATVFP----RAVMKAALQHNKPFVL-MSLRNPYDAANFEEAKALIAVYGFKGYANG 563
Query: 575 ---EAGAKALAEIIFGDFNPGGRLPM 597
+ A IFG P G LP+
Sbjct: 564 RYLQPNIPAGVMAIFGQAKPKGTLPV 589
>pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain
pdb|3LTL|B Chain B, Crystal Structure Of Human Big1 Sec7 Domain
Length = 211
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 377 LGLFNGDPRKG-----KYGKLG--PDDVCTSEHKKLALDAARQGIVLLKNDK 421
+ LFN P++G + G LG P+D+ H++ LD+ + G L NDK
Sbjct: 26 IDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDK 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,804,542
Number of Sequences: 62578
Number of extensions: 1025370
Number of successful extensions: 2144
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2076
Number of HSP's gapped (non-prelim): 39
length of query: 790
length of database: 14,973,337
effective HSP length: 107
effective length of query: 683
effective length of database: 8,277,491
effective search space: 5653526353
effective search space used: 5653526353
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)