Query 003876
Match_columns 790
No_of_seqs 386 out of 2178
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 13:36:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 1E-163 3E-168 1452.4 69.5 734 38-789 26-779 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 2E-138 4E-143 1241.0 62.3 637 58-785 31-757 (765)
3 COG1472 BglX Beta-glucosidase- 100.0 3.9E-61 8.3E-66 533.8 26.8 294 88-452 55-372 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 3.6E-55 7.8E-60 473.6 18.0 247 73-373 1-299 (299)
5 PRK05337 beta-hexosaminidase; 100.0 1.5E-44 3.3E-49 394.0 20.4 209 92-353 54-272 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 100.0 1.1E-40 2.3E-45 347.2 15.4 216 414-646 1-227 (227)
7 PF14310 Fn3-like: Fibronectin 99.8 4.9E-20 1.1E-24 156.7 6.6 70 712-782 1-71 (71)
8 PF07705 CARDB: CARDB; InterP 95.8 0.024 5.1E-07 50.6 6.5 51 694-754 19-71 (101)
9 PF10633 NPCBM_assoc: NPCBM-as 95.0 0.12 2.5E-06 44.7 7.8 67 694-779 5-74 (78)
10 PF12690 BsuPI: Intracellular 91.0 1.2 2.5E-05 39.1 7.8 67 696-777 2-81 (82)
11 PF14874 PapD-like: Flagellar- 88.0 3.7 8.1E-05 36.9 9.1 78 694-778 20-97 (102)
12 COG0486 ThdF Predicted GTPase 86.2 22 0.00049 40.8 15.7 223 282-548 60-332 (454)
13 PRK13202 ureB urease subunit b 85.2 1.4 3E-05 39.9 4.5 52 696-751 21-83 (104)
14 PRK13203 ureB urease subunit b 84.8 1.5 3.2E-05 39.7 4.5 52 696-751 20-82 (102)
15 cd00407 Urease_beta Urease bet 82.9 2.3 5E-05 38.4 4.9 52 696-751 20-82 (101)
16 TIGR00192 urease_beta urease, 82.5 2.2 4.7E-05 38.5 4.6 52 696-751 20-82 (101)
17 PF00699 Urease_beta: Urease b 81.0 2.5 5.5E-05 38.1 4.4 53 695-751 18-81 (100)
18 PRK13201 ureB urease subunit b 80.8 2.5 5.4E-05 39.9 4.5 52 696-751 20-82 (136)
19 PRK13205 ureB urease subunit b 77.1 3.6 7.9E-05 39.7 4.5 52 696-751 20-82 (162)
20 PRK13204 ureB urease subunit b 76.9 3.7 8E-05 39.7 4.5 52 696-751 43-105 (159)
21 COG1470 Predicted membrane pro 76.3 8.3 0.00018 44.0 7.7 76 694-783 284-361 (513)
22 COG0832 UreB Urea amidohydrola 75.5 4.1 8.8E-05 36.7 4.0 53 695-751 19-82 (106)
23 PRK13198 ureB urease subunit b 75.3 4.3 9.4E-05 39.2 4.5 52 696-751 48-110 (158)
24 PF00345 PapD_N: Pili and flag 69.2 11 0.00024 35.0 5.9 55 697-754 17-73 (122)
25 PRK13192 bifunctional urease s 68.4 6.6 0.00014 39.9 4.2 52 696-751 129-191 (208)
26 PF06280 DUF1034: Fn3-like dom 68.4 20 0.00042 33.0 7.2 61 695-755 9-81 (112)
27 PF07385 DUF1498: Protein of u 67.0 11 0.00024 39.1 5.5 48 701-754 111-168 (225)
28 PF14796 AP3B1_C: Clathrin-ada 66.1 18 0.00038 35.3 6.5 56 694-755 85-141 (145)
29 PRK13986 urease subunit alpha; 65.0 8.5 0.00018 39.6 4.3 52 696-751 125-187 (225)
30 PF06030 DUF916: Bacterial pro 63.8 22 0.00047 33.5 6.6 60 694-755 27-104 (121)
31 PF00927 Transglut_C: Transglu 63.7 14 0.00031 33.5 5.3 60 694-755 15-77 (107)
32 PF05506 DUF756: Domain of unk 59.9 31 0.00068 30.3 6.6 54 697-763 21-74 (89)
33 PF10087 DUF2325: Uncharacteri 58.8 71 0.0015 28.5 8.8 39 493-546 43-81 (97)
34 PF07610 DUF1573: Protein of u 57.2 29 0.00062 26.6 5.1 44 699-751 1-44 (45)
35 cd00377 ICL_PEPM Members of th 56.6 2.7E+02 0.0057 29.5 14.5 86 313-425 24-109 (243)
36 TIGR01756 LDH_protist lactate 56.5 7.7 0.00017 42.7 2.5 58 494-556 56-116 (313)
37 TIGR01759 MalateDH-SF1 malate 55.5 11 0.00024 41.7 3.6 59 494-556 75-135 (323)
38 COG1470 Predicted membrane pro 55.2 39 0.00084 38.8 7.6 57 694-756 397-454 (513)
39 PF09624 DUF2393: Protein of u 54.7 33 0.0007 33.3 6.3 59 694-753 62-132 (149)
40 PF14016 DUF4232: Protein of u 52.3 86 0.0019 29.6 8.7 57 696-754 20-82 (131)
41 PRK00286 xseA exodeoxyribonucl 50.7 72 0.0016 36.8 9.4 107 422-558 129-240 (438)
42 TIGR02695 azurin azurin. Azuri 50.2 32 0.00069 32.6 5.1 35 740-774 85-123 (125)
43 TIGR00237 xseA exodeoxyribonuc 50.2 82 0.0018 36.4 9.6 107 422-558 123-235 (432)
44 COG1160 Predicted GTPases [Gen 47.8 46 0.00099 38.3 6.9 46 490-548 75-120 (444)
45 PLN00135 malate dehydrogenase 47.2 17 0.00037 40.0 3.3 59 494-556 54-114 (309)
46 cd00704 MDH Malate dehydrogena 46.9 18 0.00039 40.0 3.5 58 494-555 72-131 (323)
47 PF13473 Cupredoxin_1: Cupredo 46.7 37 0.00079 30.7 5.0 39 697-752 44-82 (104)
48 cd01338 MDH_choloroplast_like 44.5 18 0.00039 40.0 3.0 57 494-556 74-134 (322)
49 PF00056 Ldh_1_N: lactate/mala 44.2 6.7 0.00015 37.8 -0.3 55 494-555 65-123 (141)
50 PLN00112 malate dehydrogenase 43.7 17 0.00036 42.0 2.7 58 494-556 172-232 (444)
51 cd03708 GTPBP_III Domain III o 43.0 1.6E+02 0.0034 25.4 8.3 77 695-780 5-83 (87)
52 PRK05442 malate dehydrogenase; 43.0 21 0.00045 39.6 3.3 59 494-556 76-136 (326)
53 cd00300 LDH_like L-lactate deh 42.2 20 0.00043 39.2 2.9 58 494-556 62-121 (300)
54 PF04744 Monooxygenase_B: Mono 40.9 52 0.0011 36.7 5.7 55 694-753 263-334 (381)
55 TIGR01758 MDH_euk_cyt malate d 39.9 26 0.00057 38.7 3.5 57 494-556 71-131 (324)
56 TIGR01772 MDH_euk_gproteo mala 39.3 34 0.00073 37.7 4.2 56 494-555 63-121 (312)
57 COG0039 Mdh Malate/lactate deh 38.9 30 0.00065 38.1 3.6 58 494-556 65-124 (313)
58 PF06858 NOG1: Nucleolar GTP-b 38.6 96 0.0021 25.5 5.5 24 525-548 31-55 (58)
59 PF05753 TRAP_beta: Translocon 38.4 1.3E+02 0.0029 30.4 7.9 84 694-783 38-128 (181)
60 TIGR01757 Malate-DH_plant mala 37.9 24 0.00052 40.0 2.8 57 494-556 116-176 (387)
61 cd01336 MDH_cytoplasmic_cytoso 37.2 31 0.00068 38.2 3.5 59 494-556 74-134 (325)
62 PLN02303 urease 36.3 38 0.00082 41.9 4.2 51 697-751 151-212 (837)
63 PF03808 Glyco_tran_WecB: Glyc 36.2 2E+02 0.0042 28.6 8.7 86 432-555 49-139 (172)
64 PLN02602 lactate dehydrogenase 36.0 29 0.00062 38.9 3.0 57 495-556 102-160 (350)
65 PRK09918 putative fimbrial cha 35.6 1E+02 0.0022 32.3 6.9 52 697-753 41-93 (230)
66 cd01337 MDH_glyoxysomal_mitoch 35.4 33 0.00071 37.8 3.3 57 494-555 64-122 (310)
67 PF02601 Exonuc_VII_L: Exonucl 35.1 1.4E+02 0.0031 32.7 8.2 108 421-558 7-123 (319)
68 TIGR01771 L-LDH-NAD L-lactate 34.4 29 0.00063 37.9 2.7 58 494-556 60-119 (299)
69 cd05294 LDH-like_MDH_nadp A la 34.4 43 0.00092 36.8 4.0 57 495-556 69-127 (309)
70 PRK05086 malate dehydrogenase; 32.0 43 0.00093 36.8 3.5 56 494-555 65-123 (312)
71 cd06533 Glyco_transf_WecG_TagA 31.9 2.1E+02 0.0047 28.3 8.2 41 496-555 97-137 (171)
72 PF08885 GSCFA: GSCFA family; 31.7 1.5E+02 0.0033 31.6 7.4 95 489-588 92-209 (251)
73 PRK00066 ldh L-lactate dehydro 31.4 40 0.00087 37.1 3.2 58 494-556 69-128 (315)
74 PF06205 GT36_AF: Glycosyltran 31.3 31 0.00067 30.7 1.8 26 727-754 59-84 (90)
75 TIGR01763 MalateDH_bact malate 31.1 41 0.0009 36.8 3.2 54 496-556 67-124 (305)
76 cd05291 HicDH_like L-2-hydroxy 29.8 42 0.00091 36.7 3.0 55 495-556 65-123 (306)
77 TIGR00450 mnmE_trmE_thdF tRNA 29.6 4.4E+02 0.0095 30.5 11.3 46 282-329 50-101 (442)
78 PF11906 DUF3426: Protein of u 29.5 1.9E+02 0.0041 27.8 7.2 61 694-754 68-136 (149)
79 TIGR01451 B_ant_repeat conserv 29.1 69 0.0015 25.4 3.3 22 694-716 12-33 (53)
80 PLN00106 malate dehydrogenase 28.5 51 0.0011 36.5 3.4 88 493-586 81-180 (323)
81 PF01345 DUF11: Domain of unkn 28.1 66 0.0014 27.2 3.3 19 694-712 41-59 (76)
82 cd05293 LDH_1 A subgroup of L- 27.8 41 0.00089 37.0 2.5 56 495-555 68-125 (312)
83 TIGR03079 CH4_NH3mon_ox_B meth 27.1 1.2E+02 0.0025 34.0 5.6 55 694-753 282-353 (399)
84 COG2003 RadC DNA repair protei 26.8 59 0.0013 34.0 3.2 51 279-330 158-210 (224)
85 PRK15299 fimbrial chaperone pr 26.8 1.4E+02 0.003 31.3 6.1 55 697-753 39-94 (227)
86 cd01857 HSR1_MMR1 HSR1/MMR1. 26.7 1.4E+02 0.003 28.3 5.7 18 490-507 3-20 (141)
87 cd05290 LDH_3 A subgroup of L- 26.4 54 0.0012 36.0 3.0 56 494-556 64-125 (307)
88 PTZ00117 malate dehydrogenase; 26.3 51 0.0011 36.4 2.8 57 495-556 70-128 (319)
89 PF00703 Glyco_hydro_2: Glycos 26.2 2.8E+02 0.006 24.2 7.3 64 694-763 18-81 (110)
90 PF06165 Glyco_transf_36: Glyc 26.0 30 0.00064 31.9 0.8 19 635-653 31-49 (110)
91 TIGR00696 wecB_tagA_cpsF bacte 25.6 2.6E+02 0.0056 28.2 7.5 40 497-555 99-138 (177)
92 TIGR02836 spore_IV_A stage IV 24.9 2.1E+02 0.0046 33.1 7.3 55 494-554 139-194 (492)
93 PF00009 GTP_EFTU: Elongation 24.8 2.5E+02 0.0055 27.8 7.4 48 488-548 83-130 (188)
94 PRK11199 tyrA bifunctional cho 24.3 8.9E+02 0.019 27.2 12.4 80 402-507 71-151 (374)
95 cd03707 EFTU_III Domain III of 24.1 4.7E+02 0.01 22.6 8.8 75 695-777 5-86 (90)
96 PHA00691 hypothetical protein 23.8 75 0.0016 25.7 2.5 23 763-785 11-35 (68)
97 PF00553 CBM_2: Cellulose bind 23.5 1.2E+02 0.0026 27.3 4.3 59 694-754 13-84 (101)
98 PF13598 DUF4139: Domain of un 22.4 1.9E+02 0.004 31.6 6.4 58 695-754 243-313 (317)
99 PRK15188 fimbrial chaperone pr 22.4 2.1E+02 0.0045 30.1 6.3 53 697-753 44-97 (228)
100 PF11611 DUF4352: Domain of un 22.3 1E+02 0.0022 28.2 3.7 61 694-754 36-101 (123)
101 PTZ00325 malate dehydrogenase; 22.0 76 0.0017 35.1 3.2 58 493-556 71-131 (321)
102 PRK10528 multifunctional acyl- 22.0 3.9E+02 0.0084 26.7 8.2 45 497-546 70-114 (191)
103 PRK15249 fimbrial chaperone pr 20.9 1.8E+02 0.0039 31.0 5.6 54 697-753 45-103 (253)
104 PF01926 MMR_HSR1: 50S ribosom 20.6 1.7E+02 0.0037 26.4 4.8 46 489-548 70-115 (116)
105 cd09030 DUF1425 Putative perip 20.5 4.2E+02 0.0091 23.8 7.2 54 694-753 32-89 (101)
106 PF02450 LCAT: Lecithin:choles 20.4 1.3E+02 0.0028 34.1 4.7 60 529-588 107-174 (389)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=1.4e-163 Score=1452.41 Aligned_cols=734 Identities=72% Similarity=1.250 Sum_probs=634.8
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCHHHHHHHHHhcCCHHHHHHhhcCCCCCcccCCCCchhhhhccccceecCCCCcccc-
Q 003876 38 NKPDFPCKPPHFDSYPFCNTSLSISTRAKSLISLLTLQEKIQQLSDNASAIPRLGIPAYEWWSESLHGIASNGPGVNFN- 116 (790)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ll~~mtleEKv~ql~~~~~~i~rlgip~~~~~~d~~~G~~~~~~g~~~~- 116 (790)
..++++|.+.+...+||||++++.++|+++||++||||||++||.+.+++++|||||.+.||+|++||++..++|+++.
T Consensus 26 ~~~~~~c~~~~~~~~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~~~~vpRlGIP~~~~~~d~~hGv~~~~~g~~~~~ 105 (779)
T PLN03080 26 AHPQFPCKPPTFSAYPFCNASLPIPARARSLVSLLTLDEKIAQLSNTAAGVPRLGIPPYEWWSESLHGLADNGPGVSFNS 105 (779)
T ss_pred CCCCcCCCCccccCCCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCCCCCCCcCCCCccceecccccccccCCCcccccc
Confidence 3578999987778899999999999999999999999999999999999999999999999999999998888887775
Q ss_pred CCCCccccCchhhhhhhcCCHHHHHHHHHHHHHHHHHhhccCCCcceeeCceecccCCCCCCCCCCCCCCCHHHHHHHHH
Q 003876 117 GTVSSVTSFPQVLVSAASFNRSLWSNIGSAVAVEARAMYNLGQAGLTFWAPNINIFRDPRWGRGQETPGEDPMVVSAYAV 196 (790)
Q Consensus 117 ~~~~~~t~fP~~~~laat~d~~l~~~~g~~~g~E~ra~~~~G~~g~~~laP~~di~r~p~~gr~~esfgeDp~l~~~~~~ 196 (790)
+....+|.||+++++|||||++|++++|+++|+|+|+++|.|..|+++|+|++||.|||+|||++|||||||+|+++|+.
T Consensus 106 g~~~~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a~ 185 (779)
T PLN03080 106 GPVSAATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYSV 185 (779)
T ss_pred CCCCCceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhccccccCcceeecccccccCCCcCccccCcCCCHHHHHHHHH
Confidence 33457899999999999999999999999999999999665544667789999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCcccccceeeccCCCCCCCCCccceeeeecccccCCccccCCCccceeccccChhhhhhccC
Q 003876 197 EFVKSFQGENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYDLEKWGNFSRYSFNAMITEQDTEDTFQ 276 (790)
Q Consensus 197 a~v~GlQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~l~e~~l 276 (790)
|+|+|||+.+.... .++. ..++.+|+||+||||||+++++.++.|..+++.+++++|+|+||
T Consensus 186 a~V~GlQ~~~~~~~-----------------~~~~-~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~yl 247 (779)
T PLN03080 186 EFVKGFQGGKWKKV-----------------RDDG-EDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQ 247 (779)
T ss_pred HHHHHhcCCCcccc-----------------cccc-cCCCceEEEECCeeeCCCccccCCccccCccCccCHHHHHhhhh
Confidence 99999998521000 0000 01233599999999999998777778888899999999999999
Q ss_pred hhHHHHHHhCCCceeeeeccccCCcccccCHHHHHHHHHHhCCCcEEEccchHHHHhhhccccCCCHHHHHHHHHHH---
Q 003876 277 PPFRSCIEQGKASCIMCSYNQVNGVPACLRGDLFQKARNEWGFKGYITSDCDAVATIFEYQNYTKTHEDSAAGVLKA--- 353 (790)
Q Consensus 277 ~PF~~~i~~g~~~~vM~sy~~vng~pa~~s~~ll~~LR~e~gF~G~VvSD~~~~~~~~~~~~~~~~~~~a~~~al~A--- 353 (790)
+||++||++|.+++||||||++||+|+|+|++||++||+||||+|+|||||++|..+...|++..+.++++++||+|
T Consensus 248 ~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~LR~ewGF~G~VvSD~~a~~~~~~~~~~~~~~~ea~~~Al~AG~D 327 (779)
T PLN03080 248 PPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQKARDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADVLKAGMD 327 (779)
T ss_pred HHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHHHHHHhCcCCeEecchHHHHHhhhcccccCCHHHHHHHHHHcCCC
Confidence 99999999998879999999999999999999997799999999999999999999988888877889999999988
Q ss_pred ---------------hcCCCcHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccCcHHHHHHHHHHHHhhhhhhc
Q 003876 354 ---------------DKGKVQEKDIDRALLNLFSVQLRLGLFNGDPRKGKYGKLGPDDVCTSEHKKLALDAARQGIVLLK 418 (790)
Q Consensus 354 ---------------~~g~i~~~~id~av~Ril~~k~~~Glf~~~p~~~~~~~~~~~~v~~~~h~~lA~e~A~esiVLLK 418 (790)
++|+|+|++||+||+|||++|+++|+|+..|...+|.+.....+++++|+++|+|+|++||||||
T Consensus 328 l~~~~~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLK 407 (779)
T PLN03080 328 INCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLK 407 (779)
T ss_pred cccCchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEe
Confidence 89999999999999999999999999994443334554556678899999999999999999999
Q ss_pred cCCCcccCCCCCCCeEEEEccCcccccccCCCccCCCCCcCcHHHHHHhhhcceeEeccCCCCCCCCchhHHHHHHHhhc
Q 003876 419 NDKKFLPLNKNAVSSLAIIGPLVNNISQMGGGYTGIPCSPKSLLRGLEAYVSKTHYASGCHDVPCNSDAGFHEAVRIAKK 498 (790)
Q Consensus 419 N~~~~LPL~~~~~~kIaViGp~a~~~~~~~G~~~g~~~~~~t~~egL~~~~~~~~y~~g~~~~~~~~~~~~~~a~~~a~~ 498 (790)
|++++|||++.+.+||+||||+|+....++|+|++.+++.+|++++|+++..++.|..||....+.+...+++|+++|++
T Consensus 408 N~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~~ 487 (779)
T PLN03080 408 NDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKR 487 (779)
T ss_pred cCCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhcc
Confidence 99999999976567999999999998888889999889999999999998877889999876555555678999999999
Q ss_pred CCEEEEEEecCCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCcccccccccccCccEEEEccCCChhHH
Q 003876 499 ADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGA 578 (790)
Q Consensus 499 aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~va~~~~~~vVVVl~~g~P~~l~~~~~~~~v~AiL~a~~pGqe~g 578 (790)
||+|||++|.+...++|+.||.+|.||+.|.+||++|++++++|||||+++|+|++|+|+.+.++++|||++|||||++|
T Consensus 488 aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqegG 567 (779)
T PLN03080 488 ADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVGG 567 (779)
T ss_pred CCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccch
Confidence 99999999999889999999999999999999999999875678999999999999999876678999999999999999
Q ss_pred HHHHHHHhCCCCCCccCCceeCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCCcccccCCccCCCCceeccCCCcccc
Q 003876 579 KALAEIIFGDFNPGGRLPMTWYPESFTKVPMNDMNMRADSSRQYPGRSYRFYTGTQVYGFGHGLSYTNYSYKFLSAPSEL 658 (790)
Q Consensus 579 ~AiAdVL~G~~nPSGkLPvT~~p~~~~~~p~~~~~~~~~~~~~~~g~~Yr~~~~~~~ypFG~GLSYTtF~ys~l~~~~~~ 658 (790)
+||||||||++|||||||+||||+++.++|+++++++++...+|+|++||||+.+|+||||||||||||+||++++++..
T Consensus 568 ~AiAdvLfG~vnPsGkLPvT~~p~~~~~~P~~~~~~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~~~~~~ 647 (779)
T PLN03080 568 QALAEIIFGDYNPGGRLPMTWYPESFTAVPMTDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKL 647 (779)
T ss_pred hhhHHHHcCCCCCCCcCeeeecccccccCCccccCcccccccCCCCCCceeCCCCcceeccCCCccceeEeccccccccc
Confidence 99999999999999999999999999999999888887666779999999999999999999999999999999754322
Q ss_pred ccccccccCCCcccc-cccCCCCcccccccccccccceEEEEEEEEecCCCCCceEEEEEEecCCCCCCccccccccccc
Q 003876 659 TISASLKAGSDKNIL-QQTGSRLDYVHIDEVTSCTSLRFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDR 737 (790)
Q Consensus 659 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~vsv~VtNtG~~~G~eVvQlY~~~p~~~~~~P~k~L~gF~k 737 (790)
++............. ..........+......|.+..++|+|+|||||+++|+||||||+++|.++..+|.|||+||+|
T Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~k 727 (779)
T PLN03080 648 SLSRSSVQDSISRKPLLQRRDELDYVQIEDIASCESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDR 727 (779)
T ss_pred cccccccccccccccccccccccccccccccccCCCceEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEe
Confidence 221000000000000 0000000000000001232236999999999999999999999999998877899999999999
Q ss_pred cccCCCCEEEEEEEecCCCCceEEeCCCcEEecCceEEEEEecCCceEEEEe
Q 003876 738 VHTVAKGSKEISFGVDPCEQLSIANKHGRRILPLGNHVLMVGELRHSLTIET 789 (790)
Q Consensus 738 v~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG~~s~~~~~~~ 789 (790)
|+|+|||+++|+|+|+++++|++||++++|++|+|+|+|+||+++|+++|++
T Consensus 728 v~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~~ 779 (779)
T PLN03080 728 VHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779 (779)
T ss_pred EeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeCccEEEEEeCCccceEEeC
Confidence 9999999999999999756899999999999999999999999999999975
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=1.9e-138 Score=1240.97 Aligned_cols=637 Identities=30% Similarity=0.505 Sum_probs=544.0
Q ss_pred CCCHHHHHHHHHhcCCHHHHHHhhcCCC-------------------CC-------------------cccCCCCchhhh
Q 003876 58 SLSISTRAKSLISLLTLQEKIQQLSDNA-------------------SA-------------------IPRLGIPAYEWW 99 (790)
Q Consensus 58 ~~~~~~r~~~ll~~mtleEKv~ql~~~~-------------------~~-------------------i~rlgip~~~~~ 99 (790)
+.+.++|++++|++||||||++||+... ++ .+|+|||++ +.
T Consensus 31 ~~~~~~~v~~ll~~MtleEKvgQl~~~~~~~~~~~~~~~~~i~~~~vGgv~n~~~~~~~~~lq~~~~~~~~~giP~l-i~ 109 (765)
T PRK15098 31 PEARDAFVTDLLKKMTLDEKIGQLRLISVGPDNPKEAIREMIKAGQVGAIFNTVTRQDIRAMQDQVMQLSRLKIPLF-FA 109 (765)
T ss_pred CcCHHHHHHHHHHcCCHHHHHhhhcccccCCCCchHHHHHHHHhCCcceEEcCcCHHHHHHHHHHHhhCCCCCCCee-EE
Confidence 3478899999999999999999997420 01 257899998 67
Q ss_pred hccccceecCCCCccccCCCCccccCchhhhhhhcCCHHHHHHHHHHHHHHHHHhhccCCCcceeeCceecccCCCCCCC
Q 003876 100 SESLHGIASNGPGVNFNGTVSSVTSFPQVLVSAASFNRSLWSNIGSAVAVEARAMYNLGQAGLTFWAPNINIFRDPRWGR 179 (790)
Q Consensus 100 ~d~~~G~~~~~~g~~~~~~~~~~t~fP~~~~laat~d~~l~~~~g~~~g~E~ra~~~~G~~g~~~laP~~di~r~p~~gr 179 (790)
.|++||. .|.||+++++|||||++|++++|+++|+|+|++ |+ +++ |||++||.|||+|||
T Consensus 110 ~D~e~G~---------------~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~---Gi-n~~-laPv~Dv~r~p~~gr 169 (765)
T PRK15098 110 YDVVHGQ---------------RTVFPISLGLASSWDLDAVATVGRVSAYEAADD---GL-NMT-WAPMVDISRDPRWGR 169 (765)
T ss_pred EeCCCCc---------------cccCChHHHHHHcCCHHHHHHHHHHHHHHHHHc---CC-CEE-eeCcccccCCCCccc
Confidence 7777763 578999999999999999999999999999999 66 444 699999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccceeeccCCCCCCCCCccceeeeecccccCCccccCCCcc
Q 003876 180 GQETPGEDPMVVSAYAVEFVKSFQGENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYDLEKWGNFSR 259 (790)
Q Consensus 180 ~~esfgeDp~l~~~~~~a~v~GlQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~a~~KHF~g~g~~~~~~~~r 259 (790)
++|||||||+++++|+.|+|+|||+++.. ...+|++|+|||||||.+.. +|
T Consensus 170 ~~rsfgeDP~lv~~~~~a~v~GlQ~~~~~--------------------------~~~gV~a~~KHFpG~g~~~~---~~ 220 (765)
T PRK15098 170 ASEGFGEDTYLTSIMGKTMVKAMQGKSPA--------------------------DRYSVMTSVKHFALYGAVEG---GR 220 (765)
T ss_pred cccCcCCCHHHHHHHHHHHHHHHcCCCCC--------------------------CCCCEEEECcEEeCCCCccc---Cc
Confidence 99999999999999999999999986210 11139999999999996532 35
Q ss_pred ceeccccChhhhhhccChhHHHHHHhCCCceeeeeccccCCcccccCHHHHHH-HHHHhCCCcEEEccchHHHHhhhccc
Q 003876 260 YSFNAMITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQVNGVPACLRGDLFQK-ARNEWGFKGYITSDCDAVATIFEYQN 338 (790)
Q Consensus 260 ~~~~~~~~~~~l~e~~l~PF~~~i~~g~~~~vM~sy~~vng~pa~~s~~ll~~-LR~e~gF~G~VvSD~~~~~~~~~~~~ 338 (790)
+..++++++++|+|+||+||+++|++|+. +||||||.+||+|+|+|+++|++ ||+||||+|+|||||++|..+.. |+
T Consensus 221 ~~~~~~~~~~~l~e~~l~PF~~ai~ag~~-~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~~ 298 (765)
T PRK15098 221 DYNTVDMSPQRMFNDYLPPYKAGLDAGSG-GVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK-HG 298 (765)
T ss_pred cCccCcCCHHHHHHHHHHHHHHHHHhCCC-EEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh-cc
Confidence 55567889999999999999999998866 99999999999999999999999 99999999999999999998874 66
Q ss_pred cCCCHHHHHHHHHHH-------------------hcCCCcHHHHHHHHHHHHHHHHHhcccCCCCCCCCC-C--CCCCCc
Q 003876 339 YTKTHEDSAAGVLKA-------------------DKGKVQEKDIDRALLNLFSVQLRLGLFNGDPRKGKY-G--KLGPDD 396 (790)
Q Consensus 339 ~~~~~~~a~~~al~A-------------------~~g~i~~~~id~av~Ril~~k~~~Glf~~~p~~~~~-~--~~~~~~ 396 (790)
+..+.++++++||+| ++|+|++++||+||+|||++|+++|||+ +|+.... . ......
T Consensus 299 ~~~~~~ea~~~Al~AG~Dl~m~~~~~~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~-~p~~~~~~~~~~~~~~~ 377 (765)
T PRK15098 299 VAADPEDAVRLALKSGIDMSMSDEYYSKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFN-DPYSHLGPKESDPVDTN 377 (765)
T ss_pred cCCCHHHHHHHHHHcCCCcccCchhHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCC-CCccccccccccccccc
Confidence 666778888888887 9999999999999999999999999998 5542110 0 001123
Q ss_pred cCcHHHHHHHHHHHHhhhhhhccCCCcccCCCCCCCeEEEEccCcccccccCCCcc--CCCCCcCcHHHHHHhhhc---c
Q 003876 397 VCTSEHKKLALDAARQGIVLLKNDKKFLPLNKNAVSSLAIIGPLVNNISQMGGGYT--GIPCSPKSLLRGLEAYVS---K 471 (790)
Q Consensus 397 v~~~~h~~lA~e~A~esiVLLKN~~~~LPL~~~~~~kIaViGp~a~~~~~~~G~~~--g~~~~~~t~~egL~~~~~---~ 471 (790)
+.+++|+++|+++|++|||||||++++|||++. +||+||||+++....+.|+|+ +.+.+.+|+++||++.+. .
T Consensus 378 ~~~~~~~~~a~~~a~~sivLLKN~~~~LPL~~~--~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~ 455 (765)
T PRK15098 378 AESRLHRKEAREVARESLVLLKNRLETLPLKKS--GTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKAK 455 (765)
T ss_pred cCCHHHHHHHHHHHHhcEEEEecCCCCCCCCCC--CEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCce
Confidence 457899999999999999999999999999854 699999999988776677775 566788999999999764 4
Q ss_pred eeEeccCCCCCC-------------------CCchhHHHHHHHhhcCCEEEEEEecCCCCccccCCCCCCCCCHHHHHHH
Q 003876 472 THYASGCHDVPC-------------------NSDAGFHEAVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLV 532 (790)
Q Consensus 472 ~~y~~g~~~~~~-------------------~~~~~~~~a~~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI 532 (790)
+.|..||..... ..+..+++|+++|++||+|||++|.+...++||.||.+|.||+.|.+||
T Consensus 456 v~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li 535 (765)
T PRK15098 456 VLYAKGANVTDDKGIIDFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLI 535 (765)
T ss_pred EEEecccccccCcccchhhhccccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHH
Confidence 788888852111 1134678999999999999999999988899999999999999999999
Q ss_pred HHHHHhCCCCEEEEEeCCCcccccccccccCccEEEEccCCChhHHHHHHHHHhCCCCCCccCCceeCCCCCCCCCCCCC
Q 003876 533 TSVARTSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGAKALAEIIFGDFNPGGRLPMTWYPESFTKVPMNDM 612 (790)
Q Consensus 533 ~~va~~~~~~vVVVl~~g~P~~l~~~~~~~~v~AiL~a~~pGqe~g~AiAdVL~G~~nPSGkLPvT~~p~~~~~~p~~~~ 612 (790)
++|++. ++|||||+++|+||+|+|+. ++++|||++|+|||++|+|+||||||++|||||||+|| |++.+++|.+++
T Consensus 536 ~~v~~~-~~~vVvVl~~g~P~~l~~~~--~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~-p~~~~~~P~~~~ 611 (765)
T PRK15098 536 AALKAT-GKPLVLVLMNGRPLALVKED--QQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSF-PRSVGQIPVYYN 611 (765)
T ss_pred HHHHHh-CcCEEEEEeCCceeeccchh--hcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccce-eCCCCcCccccc
Confidence 999998 88999999999999999874 48999999999999999999999999999999999997 888899998654
Q ss_pred CcccC---CCCCCCCCcccccCC--CcccccCCccCCCCceeccCCCccccccccccccCCCcccccccCCCCccccccc
Q 003876 613 NMRAD---SSRQYPGRSYRFYTG--TQVYGFGHGLSYTNYSYKFLSAPSELTISASLKAGSDKNILQQTGSRLDYVHIDE 687 (790)
Q Consensus 613 ~~~~~---~~~~~~g~~Yr~~~~--~~~ypFG~GLSYTtF~ys~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (790)
..... .+..+.+.+||||+. +|+||||||||||+|+||++++.+.. ..
T Consensus 612 ~~~~~~~y~e~~~~~y~yry~d~~~~plypFG~GLSYT~F~ys~l~v~~~~------------------------~~--- 664 (765)
T PRK15098 612 HLNTGRPYNPDKPNKYTSRYFDEANGPLYPFGYGLSYTTFTVSDVKLSSPT------------------------MK--- 664 (765)
T ss_pred cCCCCCccccCcccccccceeccCCCccccccCCCCCccEEeeccEecccc------------------------cc---
Confidence 32211 111122235899986 48999999999999999999832100 00
Q ss_pred ccccccceEEEEEEEEecCCCCCceEEEEEEecCCCCCCccccccccccccccCCCCEEEEEEEecCCCCceEEeCCCcE
Q 003876 688 VTSCTSLRFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANKHGRR 767 (790)
Q Consensus 688 ~~~~~~~~v~vsv~VtNtG~~~G~eVvQlY~~~p~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~ 767 (790)
. ++.++|+|+|||||+++|+||||||+++|.+++.+|.|||+||+||+|+|||+++|+|+|+. ++|++||.+++|
T Consensus 665 ~----~~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~-~~L~~~d~~~~~ 739 (765)
T PRK15098 665 R----DGKVTASVTVTNTGKREGATVVQLYLQDVTASMSRPVKELKGFEKIMLKPGETQTVSFPIDI-EALKFWNQQMKY 739 (765)
T ss_pred C----CCeEEEEEEEEECCCCCccEEEEEeccCCCCCCCCHHHhccCceeEeECCCCeEEEEEeecH-HHhceECCCCcE
Confidence 0 15799999999999999999999999999998889999999999999999999999999998 689999999999
Q ss_pred EecCceEEEEEecCCceE
Q 003876 768 ILPLGNHVLMVGELRHSL 785 (790)
Q Consensus 768 ~~~~G~y~i~vG~~s~~~ 785 (790)
++|+|+|+|+||+||+++
T Consensus 740 ~~e~G~y~v~vG~ss~d~ 757 (765)
T PRK15098 740 VAEPGKFNVFIGLDSARV 757 (765)
T ss_pred EEeCceEEEEEECCCCcc
Confidence 999999999999999865
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-61 Score=533.77 Aligned_cols=294 Identities=36% Similarity=0.592 Sum_probs=255.1
Q ss_pred cccCCCCchhhhhccccceecCCCCccccCCCCccccCchhhhhhhcCCHHHHHHHHHHHHHHHHHhhccCCCcceeeCc
Q 003876 88 IPRLGIPAYEWWSESLHGIASNGPGVNFNGTVSSVTSFPQVLVSAASFNRSLWSNIGSAVAVEARAMYNLGQAGLTFWAP 167 (790)
Q Consensus 88 i~rlgip~~~~~~d~~~G~~~~~~g~~~~~~~~~~t~fP~~~~laat~d~~l~~~~g~~~g~E~ra~~~~G~~g~~~laP 167 (790)
.+|++||++ +..|.+||. +++...++|.||+++++||+||+++++++|+++|+|+|++ |+ +++ |||
T Consensus 55 ~~r~~ipll-i~~D~egG~--------v~r~~~~~t~fP~~~alaa~~~~~la~~~g~~~A~Elra~---Gi-n~~-fAP 120 (397)
T COG1472 55 EARLGIPLL-IAIDQEGGR--------VQRLREGFTVFPAALALAATWDPELARKVGRVIAKELRAL---GI-NLD-FAP 120 (397)
T ss_pred hhccCCCeE-EEEecCCCe--------eeeccCCCCcCChhhhhhhcCCHHHHHHHHHHHHHHHHHc---CC-Ccc-ccc
Confidence 358899998 455555554 4443336899999999999999999999999999999999 66 555 599
Q ss_pred eecccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccceeeccCCCCCCCCCccceeeeeccc
Q 003876 168 NINIFRDPRWGRGQET-PGEDPMVVSAYAVEFVKSFQGENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHL 246 (790)
Q Consensus 168 ~~di~r~p~~gr~~es-fgeDp~l~~~~~~a~v~GlQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~a~~KHF 246 (790)
|+||.|||+|||.+|+ |||||++++.|+.|||+|||+. | |++|+|||
T Consensus 121 vlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~i~Glq~~----------------------------g----v~at~KHF 168 (397)
T COG1472 121 VLDVARDPRWGRIGERSFGEDPELVALLAAAFIKGLQGA----------------------------G----VAATIKHF 168 (397)
T ss_pred eeecccCCCcCccccccCCCCHHHHHHHHHHHHHHHhhC----------------------------C----ceeeeccc
Confidence 9999999999988777 9999999999999999999998 6 99999999
Q ss_pred ccCCccccCCCccceeccccChhhhhhccChhHHHHHHhCC--CceeeeeccccCCcccccCHHHHHH-HHHHhCCCcEE
Q 003876 247 IAYDLEKWGNFSRYSFNAMITEQDTEDTFQPPFRSCIEQGK--ASCIMCSYNQVNGVPACLRGDLFQK-ARNEWGFKGYI 323 (790)
Q Consensus 247 ~g~g~~~~~~~~r~~~~~~~~~~~l~e~~l~PF~~~i~~g~--~~~vM~sy~~vng~pa~~s~~ll~~-LR~e~gF~G~V 323 (790)
||||..+.+.|- .+..++++.|+|+|++||+.+++.+. +.++|++||.+||.|||.|+++|++ ||++|||+|+|
T Consensus 169 pGhG~~~~dsh~---~~~~v~~~~L~e~~~~~f~~~~~~~~~~~mtahv~y~~id~~Pat~s~~ll~diLR~~~GF~G~V 245 (397)
T COG1472 169 PGHGAVEGDSHY---GLLPIDPRALRELYLPPFQPAIALGDDAAMTAHVAYPKIDGTPATLSRKLLTDILRDEWGFDGVV 245 (397)
T ss_pred cCCCCCcCCccc---ccCCCChHHHHHhhccchHHHHHhccccceEEeeeccCCCCCcccCCHHHHHHHHHhccCCCeEE
Confidence 999987655542 22778999999999999999999995 6799999999999999999999999 99999999999
Q ss_pred EccchHHHHhhhccccCCCHHHHHHHHHHH--------------------hcCCCcHHHHHHHHHHHHHHHHHhcccCCC
Q 003876 324 TSDCDAVATIFEYQNYTKTHEDSAAGVLKA--------------------DKGKVQEKDIDRALLNLFSVQLRLGLFNGD 383 (790)
Q Consensus 324 vSD~~~~~~~~~~~~~~~~~~~a~~~al~A--------------------~~g~i~~~~id~av~Ril~~k~~~Glf~~~ 383 (790)
||||++|.++... ..+..+++..+|+| ..+ +++++||++|+|||++|+++|+|+ +
T Consensus 246 iSD~~~m~~~~~~---~g~~~d~~~~al~AG~Di~l~~~~~~~~~~~~~~~~~-~~~~~i~~~v~Ril~~k~~~~~f~-~ 320 (397)
T COG1472 246 ISDDLSMKAIAAA---HGSAADRAEAALKAGVDIVLVCNELYEAYLVVLELVG-LSEARLDDAVRRILRVKFKLGLFE-N 320 (397)
T ss_pred EeecchhHHHHHh---ccCHHHHHHHHHhcCCCEEecCCchhHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhcccc-C
Confidence 9999999987764 23556666667777 333 999999999999999999999999 6
Q ss_pred CCCCCCCCCCCCccCcHHHHHHHHHHHHhhhhhhccCCCcccCCCCCCCeEEEEccCcccccccCCCcc
Q 003876 384 PRKGKYGKLGPDDVCTSEHKKLALDAARQGIVLLKNDKKFLPLNKNAVSSLAIIGPLVNNISQMGGGYT 452 (790)
Q Consensus 384 p~~~~~~~~~~~~v~~~~h~~lA~e~A~esiVLLKN~~~~LPL~~~~~~kIaViGp~a~~~~~~~G~~~ 452 (790)
|+. .+|++++++++++|+|||||+..+|||+ .+.++|+|+||+++.. . |+|+
T Consensus 321 ~~~-------------~~~~~~a~~~~~~~~~ll~n~~~~~p~~-~~~~~i~v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 321 PYS-------------SEHRALAREAARESIVLLKNDGGLLPLK-KSAKRIAVIGPYADDG-D--GGWS 372 (397)
T ss_pred CCc-------------hhhHHHHHHHHHHHHHHHHhccCCCccc-cccCceEEEccccccC-C--CCee
Confidence 531 1899999999999999999998999999 4557999999999987 5 6665
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=3.6e-55 Score=473.62 Aligned_cols=247 Identities=33% Similarity=0.554 Sum_probs=197.5
Q ss_pred CHHHHHHhhcCC----------------------------CCCcccCCCCchhhhhccccceecCCCCccccCCCCcccc
Q 003876 73 TLQEKIQQLSDN----------------------------ASAIPRLGIPAYEWWSESLHGIASNGPGVNFNGTVSSVTS 124 (790)
Q Consensus 73 tleEKv~ql~~~----------------------------~~~i~rlgip~~~~~~d~~~G~~~~~~g~~~~~~~~~~t~ 124 (790)
||||||+||+.. ....+++|||++ +..|++||+.. +.....|.
T Consensus 1 TleeKigQl~~~~~~~i~~~~vGgv~~~~~~~~~~~~~~~~~~~~~~~iP~~-i~~D~egG~~~--------~~~~~~t~ 71 (299)
T PF00933_consen 1 TLEEKIGQLFMELKELIKEYHVGGVILPEQLKQLTQSLQAISEQSRLGIPLL-IAIDQEGGIVQ--------RLGGGFTA 71 (299)
T ss_dssp -HHHHHHHTEEHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHCCGCGTCT-E-EEEEETTSTTT--------STTTTS--
T ss_pred CHHHHHHHHHHHHHHHHhcCCccEEEcHHHHHHHHHHHHHHhhccccCCCeE-EEEcCCCceEe--------cCCCcCcc
Confidence 899999999821 124578999998 56777777643 22223699
Q ss_pred CchhhhhhhcCCHHHHHHHHHHHHHHHHHhhccCCCcceeeCceecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhc
Q 003876 125 FPQVLVSAASFNRSLWSNIGSAVAVEARAMYNLGQAGLTFWAPNINIFRDPRWGRGQETPGEDPMVVSAYAVEFVKSFQG 204 (790)
Q Consensus 125 fP~~~~laat~d~~l~~~~g~~~g~E~ra~~~~G~~g~~~laP~~di~r~p~~gr~~esfgeDp~l~~~~~~a~v~GlQ~ 204 (790)
||+++++|||||+++++++|..+|+|++++ |+ +++ |||++||.|+|+|||+.|||||||+++++|+.|||+|+|+
T Consensus 72 ~P~~~~l~at~d~~~a~~~g~~~a~el~~~---Gi-n~~-~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~q~ 146 (299)
T PF00933_consen 72 FPSPMALAATWDPELAYEVGRIIARELRAL---GI-NVN-FAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGLQG 146 (299)
T ss_dssp -S-HHHHHHHTCHHHHHHHHHHHHHHHHHT---T--SEE-EEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHHHC
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHHHh---hh-ccc-cccceeeeeeccccccccccchhHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999 66 555 5999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccccceeeccCCCCCCCCCccceeeeecccccCCccccCCCccceeccccChhhhhhccChhHHHHH-
Q 003876 205 ENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYDLEKWGNFSRYSFNAMITEQDTEDTFQPPFRSCI- 283 (790)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~l~e~~l~PF~~~i- 283 (790)
. | |++|+||||||+. .+.++....+++++++|+|.||+||+.+|
T Consensus 147 ~----------------------------g----v~~~~KHFpG~~~---~d~~~~~~~~~~~~~~l~~~~l~pF~~~i~ 191 (299)
T PF00933_consen 147 A----------------------------G----VAATAKHFPGHGA---QDSHRDLPSVDVSERELREIDLPPFRAAIK 191 (299)
T ss_dssp T----------------------------T----SEEEEEEETTGGC---SCTTTTTEEEE--HHHHHHTTSHHHHHHHH
T ss_pred c----------------------------c----ccccccccccccc---cccccccceecCCcccccchhcccchhccc
Confidence 8 6 9999999999942 23345666778899999999999999999
Q ss_pred HhCCCceeeeeccccCCcccccCHHHHHH-HHHHhCCCcEEEccchHHHHhhhccccCCCHHHHHHHHHHH---------
Q 003876 284 EQGKASCIMCSYNQVNGVPACLRGDLFQK-ARNEWGFKGYITSDCDAVATIFEYQNYTKTHEDSAAGVLKA--------- 353 (790)
Q Consensus 284 ~~g~~~~vM~sy~~vng~pa~~s~~ll~~-LR~e~gF~G~VvSD~~~~~~~~~~~~~~~~~~~a~~~al~A--------- 353 (790)
++|+. +|||||+.+|++|+|+|++++++ ||+||||+|+|||||++|+++... ....+++++||+|
T Consensus 192 ~ag~~-~VM~sy~~id~~pas~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~----~~~~~~~~~al~AG~D~~l~~~ 266 (299)
T PF00933_consen 192 DAGAD-AVMTSYPAIDGTPASLSPKILTDLLRNELGFDGVVISDDLEMGALSSN----YSIEEAAVRALNAGCDMLLVCN 266 (299)
T ss_dssp HTT-S-EEEE-STCCTTEEGGG-HHHHCCCCCCCS---SEEEESTTTSHHHHCC----TTHHHHHHHHHHHT-SBEESSS
T ss_pred ccccc-eeeeeccccCCccchhhhccchhhCcCcccCCCeEecccchHHHHHhc----cccchHHHHHHhCccCeeCCCC
Confidence 66655 99999999999999999999999 999999999999999999998763 3467888888887
Q ss_pred -------------hcCCCcHHHHHHHHHHHHHH
Q 003876 354 -------------DKGKVQEKDIDRALLNLFSV 373 (790)
Q Consensus 354 -------------~~g~i~~~~id~av~Ril~~ 373 (790)
++|.++++|||+||+|||++
T Consensus 267 ~~~~~~~~l~~av~~g~i~~~~ld~av~RIl~~ 299 (299)
T PF00933_consen 267 DPDDDIDALVEAVESGRISEERLDEAVRRILRL 299 (299)
T ss_dssp SHHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHHhcC
Confidence 89999999999999999985
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=1.5e-44 Score=393.96 Aligned_cols=209 Identities=24% Similarity=0.272 Sum_probs=179.6
Q ss_pred CCCchhhhhccccceecCCCCccccCCCCccccCchhhhhhhcCC------HHHHHHHHHHHHHHHHHhhccCCCcceee
Q 003876 92 GIPAYEWWSESLHGIASNGPGVNFNGTVSSVTSFPQVLVSAASFN------RSLWSNIGSAVAVEARAMYNLGQAGLTFW 165 (790)
Q Consensus 92 gip~~~~~~d~~~G~~~~~~g~~~~~~~~~~t~fP~~~~laat~d------~~l~~~~g~~~g~E~ra~~~~G~~g~~~l 165 (790)
++|++ +. .|++|+++++...+.|.||+++++||||| ++|++++|+++|+|+|++ |+ +++ |
T Consensus 54 ~~pll-i~--------iD~EgG~v~rl~~~~t~~P~~~~laat~d~~~~~~~~la~~~g~~~a~Elra~---Gi-n~~-~ 119 (337)
T PRK05337 54 RPPLL-IA--------VDQEGGRVQRFREGFTRLPAMQSFGALWDRDPLEALKLAEEAGWLMAAELRAC---GI-DLS-F 119 (337)
T ss_pred CCCCE-EE--------EecCCCEeeecCCCCCCCCCHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHh---CC-Ccc-c
Confidence 57877 44 44555555555556899999999999999 999999999999999999 66 555 5
Q ss_pred CceecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccceeeccCCCCCCCCCccceeeeecc
Q 003876 166 APNINIFRDPRWGRGQETPGEDPMVVSAYAVEFVKSFQGENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKH 245 (790)
Q Consensus 166 aP~~di~r~p~~gr~~esfgeDp~l~~~~~~a~v~GlQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~a~~KH 245 (790)
+||+||.++++| |+.|+|||||+++++|+.|||+|||+. | |++|+||
T Consensus 120 aPvlDv~~~~~~-ig~RsfgeDp~lv~~~a~a~i~Glq~~----------------------------g----v~~~~KH 166 (337)
T PRK05337 120 APVLDLDGISAV-IGDRAFHRDPQVVAALASAFIDGMHAA----------------------------G----MAATGKH 166 (337)
T ss_pred cCccCCCCCCCe-eeccCCCCCHHHHHHHHHHHHHHHHHC----------------------------C----CEEEecc
Confidence 999999965554 889999999999999999999999998 6 9999999
Q ss_pred cccCCccccCCCccceeccccChhhhhhccChhHHHHHHhCCCceeeee---ccccCCcccccCHHHHHH-HHHHhCCCc
Q 003876 246 LIAYDLEKWGNFSRYSFNAMITEQDTEDTFQPPFRSCIEQGKASCIMCS---YNQVNGVPACLRGDLFQK-ARNEWGFKG 321 (790)
Q Consensus 246 F~g~g~~~~~~~~r~~~~~~~~~~~l~e~~l~PF~~~i~~g~~~~vM~s---y~~vng~pa~~s~~ll~~-LR~e~gF~G 321 (790)
|||||.+..++|.... ....+.++|++.||+||+.+|++|.. +|||| |+.+|++|||+|+++|++ ||+||||+|
T Consensus 167 FpG~G~~~~dsh~~~~-~~~~~~~el~~~~l~PF~~ai~~g~~-~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G 244 (337)
T PRK05337 167 FPGHGAVEADSHVETP-VDERPLEEIRAEDMAPFRALIAAGLD-AVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDG 244 (337)
T ss_pred cCCCCCCcCCCCCCCC-CCCCCHHHHHhhhHHHHHHHHhcCCC-EEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCE
Confidence 9999988766665443 23456779999999999999999955 99999 899999999999999999 999999999
Q ss_pred EEEccchHHHHhhhccccCCCHHHHHHHHHHH
Q 003876 322 YITSDCDAVATIFEYQNYTKTHEDSAAGVLKA 353 (790)
Q Consensus 322 ~VvSD~~~~~~~~~~~~~~~~~~~a~~~al~A 353 (790)
+|||||++|.++.. ..+.++++++||+|
T Consensus 245 ~ViSD~l~m~a~~~----~~~~~~~~~~al~A 272 (337)
T PRK05337 245 VIFSDDLSMEGAAV----AGDYAERAQAALDA 272 (337)
T ss_pred EEEecchhhhhhhh----cCCHHHHHHHHHHc
Confidence 99999999987643 45778999999998
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=1.1e-40 Score=347.23 Aligned_cols=216 Identities=38% Similarity=0.626 Sum_probs=159.7
Q ss_pred hhhhccCCCcccCCCCCCCeEEEEccCcccccccCCCcc-CCCCCcCcHHHHHHhhhcceeE--eccCCCCCCCCchhHH
Q 003876 414 IVLLKNDKKFLPLNKNAVSSLAIIGPLVNNISQMGGGYT-GIPCSPKSLLRGLEAYVSKTHY--ASGCHDVPCNSDAGFH 490 (790)
Q Consensus 414 iVLLKN~~~~LPL~~~~~~kIaViGp~a~~~~~~~G~~~-g~~~~~~t~~egL~~~~~~~~y--~~g~~~~~~~~~~~~~ 490 (790)
||||||++++|||++++. ||+|+|+.+.....++|+++ ..+.+..+++++|++++..... ..++.. ..+...++
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~ 77 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGGDA--VDDDEGID 77 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCCCC--CCCCSCHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeeccc--cccccchH
Confidence 799999999999998643 99999999998766655554 3456679999999998765322 221211 12456788
Q ss_pred HHHHHhhcCCEEEEEEecCCCCcccc--------CCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCccccccccccc
Q 003876 491 EAVRIAKKADFVIVVAGLDLTQETED--------RDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVSFAEADS 562 (790)
Q Consensus 491 ~a~~~a~~aDvvIv~vG~~~~~e~Eg--------~Dr~~l~Lp~~q~~LI~~va~~~~~~vVVVl~~g~P~~l~~~~~~~ 562 (790)
++++.++++|+|||++|.. ++|| .||.++.||..|.+||+++++. ++|+|||+++|+||++.++. +
T Consensus 78 ~~~~~~~~aD~vIv~~~~~---~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~-~~~~Ivvv~~~~P~~l~~~~--~ 151 (227)
T PF01915_consen 78 EAVAAAKEADVVIVFVGRP---SGEGNDNNTEGESDRSDLALPANQQELIKAVAAA-GKKVIVVVNSGNPYDLDPWE--D 151 (227)
T ss_dssp HHHHHHHCSSEEEEEEETT---SBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHH-HSCEEEEEE-SSGGCGHCCH--H
T ss_pred HHHHHhhcCCEEEEecccc---ccccccccccccCCcccccchhhHHHHHHHHHHh-cCCeEEEEecCCccccHHHH--h
Confidence 9999999999999999932 3444 6999999999999999999998 68999999999999997775 4
Q ss_pred CccEEEEccCCChhHHHHHHHHHhCCCCCCccCCceeCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCCcccccCCcc
Q 003876 563 QISSILWIGYPGEAGAKALAEIIFGDFNPGGRLPMTWYPESFTKVPMNDMNMRADSSRQYPGRSYRFYTGTQVYGFGHGL 642 (790)
Q Consensus 563 ~v~AiL~a~~pGqe~g~AiAdVL~G~~nPSGkLPvT~~p~~~~~~p~~~~~~~~~~~~~~~g~~Yr~~~~~~~ypFG~GL 642 (790)
+++|||++|++|+++++|+||||||++|||||||+|| |++..++|.++... ..+++|++....++|||||||
T Consensus 152 ~~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~-p~~~~~~p~~~~~~-------~~~~~~~~~~~~~~~~fG~GL 223 (227)
T PF01915_consen 152 NVDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTI-PKSMEDIPAYYNYG-------MYGRTYDYDSGPPLYPFGYGL 223 (227)
T ss_dssp C-SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-B-ESSGGGTTTTTTTS--------THCCHHHHTTSESB-TT--B
T ss_pred hhceEeeccccchHHHHHHHHHHcCCCCCCCCcceec-cCChhhCCCccccc-------ccCcccccCCCCccCcCCCCC
Confidence 8999999999999999999999999999999999998 88788888754221 123467777889999999999
Q ss_pred CCCC
Q 003876 643 SYTN 646 (790)
Q Consensus 643 SYTt 646 (790)
|||+
T Consensus 224 syt~ 227 (227)
T PF01915_consen 224 SYTY 227 (227)
T ss_dssp -TT-
T ss_pred EeeC
Confidence 9996
No 7
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=99.80 E-value=4.9e-20 Score=156.71 Aligned_cols=70 Identities=36% Similarity=0.586 Sum_probs=60.7
Q ss_pred eEEEEEEecCCCCCCccccccccccccccCCCCEEEEEEEecCCCCceEEeCC-CcEEecCceEEEEEecCC
Q 003876 712 HVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANKH-GRRILPLGNHVLMVGELR 782 (790)
Q Consensus 712 eVvQlY~~~p~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~-~~~~~~~G~y~i~vG~~s 782 (790)
||||||+++|.++..+|.|+|+||+||+|+|||+++|+|+|++ ++|++||.+ ++|++++|+|+|+||++|
T Consensus 1 EVvqlY~~~~~~~~~~P~~~L~gF~rv~l~pGes~~v~~~l~~-~~l~~~d~~~~~~~~~~G~~~l~vG~sS 71 (71)
T PF14310_consen 1 EVVQLYVSDPQSSVQRPVKQLVGFERVSLAPGESKTVSFTLPP-EDLAYWDEDAGKWVIEPGTYTLSVGDSS 71 (71)
T ss_dssp EEEEEEEEESSSSS---S-EEEEEEEEEE-TT-EEEEEEEEEH-HHHEEEETTTTCEEE-SEEEEEEEECCT
T ss_pred CEEEEEEEeCCCCCCCchheecceEEEEECCCCEEEEEEEECH-HHEeeEcCCCCEEEEeCCeEEEEEECCC
Confidence 8999999999998889999999999999999999999999999 689999998 799999999999999987
No 8
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=95.79 E-value=0.024 Score=50.60 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=36.4
Q ss_pred ceEEEEEEEEecCCCC-CceEEEEEEecCCCCCCcccccccccccc-ccCCCCEEEEEEEecC
Q 003876 694 LRFHVQISVTNAGDVD-GSHVVMLFARVPKVSQGTPEKQLIGFDRV-HTVAKGSKEISFGVDP 754 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~-G~eVvQlY~~~p~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~ 754 (790)
+.++++++|+|.|..+ +.-.+++|+..... +-..| .|+|||+++|+|++..
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~----------~~~~i~~L~~g~~~~v~~~~~~ 71 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLDGNSV----------STVTIPSLAPGESETVTFTWTP 71 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEETTEEE----------EEEEESEB-TTEEEEEEEEEE-
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEECCcee----------ccEEECCcCCCcEEEEEEEEEe
Confidence 5799999999999875 55677788754321 34455 5999999999999986
No 9
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.00 E-value=0.12 Score=44.65 Aligned_cols=67 Identities=22% Similarity=0.258 Sum_probs=37.0
Q ss_pred ceEEEEEEEEecCCCCCceEEEEEEecCCC-CC-Ccccccccccccc-ccCCCCEEEEEEEecCCCCceEEeCCCcEEec
Q 003876 694 LRFHVQISVTNAGDVDGSHVVMLFARVPKV-SQ-GTPEKQLIGFDRV-HTVAKGSKEISFGVDPCEQLSIANKHGRRILP 770 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~G~eVvQlY~~~p~~-~~-~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~ 770 (790)
+.++++++|+|.|..+-.. +-|=+..|.. .. ..|. ++ .|+|||+++++|+|.+-++ .+
T Consensus 5 ~~~~~~~tv~N~g~~~~~~-v~~~l~~P~GW~~~~~~~-------~~~~l~pG~s~~~~~~V~vp~~-----------a~ 65 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTN-VSLSLSLPEGWTVSASPA-------SVPSLPPGESVTVTFTVTVPAD-----------AA 65 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS--EEEEE--TTSE---EEE-------EE--B-TTSEEEEEEEEEE-TT-------------
T ss_pred CEEEEEEEEEECCCCceee-EEEEEeCCCCccccCCcc-------ccccCCCCCEEEEEEEEECCCC-----------CC
Confidence 5789999999999765332 3444444543 11 1222 22 7999999999999988431 35
Q ss_pred CceEEEEEe
Q 003876 771 LGNHVLMVG 779 (790)
Q Consensus 771 ~G~y~i~vG 779 (790)
+|+|.|.+-
T Consensus 66 ~G~y~v~~~ 74 (78)
T PF10633_consen 66 PGTYTVTVT 74 (78)
T ss_dssp SEEEEEEEE
T ss_pred CceEEEEEE
Confidence 788888653
No 10
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=91.03 E-value=1.2 Score=39.11 Aligned_cols=67 Identities=18% Similarity=0.099 Sum_probs=33.4
Q ss_pred EEEEEEEEecCCCC-------CceEEEEEEecCCCC------CCccccccccccccccCCCCEEEEEEEecCCCCceEEe
Q 003876 696 FHVQISVTNAGDVD-------GSHVVMLFARVPKVS------QGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIAN 762 (790)
Q Consensus 696 v~vsv~VtNtG~~~-------G~eVvQlY~~~p~~~------~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d 762 (790)
+.++++|+|+++.+ |. -.-+.|.++... ..+.- ...+..+.|+|||+.+.+++++. .+++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq-~~D~~v~d~~g~~vwrwS~~~~F--tQal~~~~l~pGe~~~~~~~~~~-~~~~--- 74 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQ-RYDFVVKDKEGKEVWRWSDGKMF--TQALQEETLEPGESLTYEETWDL-KDLS--- 74 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS---EEEEEE-TT--EEEETTTT---------EEEEE-TT-EEEEEEEESS--------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCC-EEEEEEECCCCCEEEEecCCchh--hheeeEEEECCCCEEEEEEEECC-CCCC---
Confidence 56778888877632 21 123344444332 11221 23445677999999999999997 4454
Q ss_pred CCCcEEecCceEEEE
Q 003876 763 KHGRRILPLGNHVLM 777 (790)
Q Consensus 763 ~~~~~~~~~G~y~i~ 777 (790)
+|+|++.
T Consensus 75 --------~G~Y~~~ 81 (82)
T PF12690_consen 75 --------PGEYTLE 81 (82)
T ss_dssp --------SEEEEEE
T ss_pred --------CceEEEe
Confidence 8999875
No 11
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=87.98 E-value=3.7 Score=36.86 Aligned_cols=78 Identities=13% Similarity=0.061 Sum_probs=49.9
Q ss_pred ceEEEEEEEEecCCCCCceEEEEEEecCCCCCCccccccccccccccCCCCEEEEEEEecCCCCceEEeCCCcEEecCce
Q 003876 694 LRFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANKHGRRILPLGN 773 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~G~eVvQlY~~~p~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~ 773 (790)
...+.+++|+|+|....+- -++.+... .... -..+..-.|+||++.++.+++.+.+....++..-.-..+.|.
T Consensus 20 ~~~~~~v~l~N~s~~p~~f----~v~~~~~~-~~~~--~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~e~~~ 92 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARF----RVRQPESL-SSFF--SVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLVITTEGGS 92 (102)
T ss_pred CEEEEEEEEEECCCCCEEE----EEEeCCcC-CCCE--EEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEEEEECCeE
Confidence 4678999999999988543 33334311 0111 112345569999999999999943456666654444567777
Q ss_pred EEEEE
Q 003876 774 HVLMV 778 (790)
Q Consensus 774 y~i~v 778 (790)
+.|-|
T Consensus 93 ~~i~v 97 (102)
T PF14874_consen 93 FEIPV 97 (102)
T ss_pred EEEEE
Confidence 77755
No 12
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=86.16 E-value=22 Score=40.79 Aligned_cols=223 Identities=18% Similarity=0.185 Sum_probs=109.5
Q ss_pred HHHhCCCceeeeeccccCCc-----ccccCHHHHHH-HHHHhCCCcEEEccchHHH-HhhhccccCCCHHHHH-------
Q 003876 282 CIEQGKASCIMCSYNQVNGV-----PACLRGDLFQK-ARNEWGFKGYITSDCDAVA-TIFEYQNYTKTHEDSA------- 347 (790)
Q Consensus 282 ~i~~g~~~~vM~sy~~vng~-----pa~~s~~ll~~-LR~e~gF~G~VvSD~~~~~-~~~~~~~~~~~~~~a~------- 347 (790)
.|+++.. .+|.+.+.+.|+ .++-++-+++. |+-=+. .|.-+..-++.- ..+-+.....+..|++
T Consensus 60 ~iDe~lv-l~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~-~GaR~AepGEFs~RAFLNgK~DLtqAEai~dLI~A~ 137 (454)
T COG0486 60 IIDEVLV-LYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLK-LGARLAEPGEFSKRAFLNGKLDLTQAEAIADLIDAK 137 (454)
T ss_pred EeeeeeE-EEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHH-cCCeecCCCcchHHHHhcCCccHHHHHHHHHHHhCC
Confidence 4556666 889998988873 67888888877 554332 234444333211 0000112222233333
Q ss_pred -----HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc-cCCCCCCCCCCCCCCCccCcHHHHHHHHHHH--Hhhh-hhhc
Q 003876 348 -----AGVLKADKGKVQEKDIDRALLNLFSVQLRLGL-FNGDPRKGKYGKLGPDDVCTSEHKKLALDAA--RQGI-VLLK 418 (790)
Q Consensus 348 -----~~al~A~~g~i~~~~id~av~Ril~~k~~~Gl-f~~~p~~~~~~~~~~~~v~~~~h~~lA~e~A--~esi-VLLK 418 (790)
..|++.-+|.++ ++|++-..+++.+....-- .| -| +. ++....+..+..++. .+-+ -+|.
T Consensus 138 te~a~r~A~~~l~G~ls-~~i~~lr~~li~~~a~vEa~ID-fp------ee---di~~~~~~~i~~~l~~~~~~l~~ll~ 206 (454)
T COG0486 138 TEQAARIALRQLQGALS-QLINELREALLELLAQVEANID-FP------EE---DIEELVLEKIREKLEELIAELDELLA 206 (454)
T ss_pred CHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHheEeCC-CC------cc---cccchhHHHHHHHHHHHHHHHHHHHH
Confidence 344444677775 5677777777776554421 22 12 11 222222222211111 1111 2222
Q ss_pred cCCCcccCCCCCCCeEEEEc-cCcccccccCCCccCCCCCcCcHHHHHHhhhcc-eeE----------------------
Q 003876 419 NDKKFLPLNKNAVSSLAIIG-PLVNNISQMGGGYTGIPCSPKSLLRGLEAYVSK-THY---------------------- 474 (790)
Q Consensus 419 N~~~~LPL~~~~~~kIaViG-p~a~~~~~~~G~~~g~~~~~~t~~egL~~~~~~-~~y---------------------- 474 (790)
.-..--.|.. +-||+++| ||+.. .|++-+|-.+-.. ++-
T Consensus 207 ~~~~g~ilr~--G~kvvIiG~PNvGK---------------SSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l 269 (454)
T COG0486 207 TAKQGKILRE--GLKVVIIGRPNVGK---------------SSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRL 269 (454)
T ss_pred hhhhhhhhhc--CceEEEECCCCCcH---------------HHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEE
Confidence 2222222332 46899999 44432 2345444332100 111
Q ss_pred --eccCCCCC-CCCchhHHHHHHHhhcCCEEEEEEecCCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEe
Q 003876 475 --ASGCHDVP-CNSDAGFHEAVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLT 548 (790)
Q Consensus 475 --~~g~~~~~-~~~~~~~~~a~~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~va~~~~~~vVVVl~ 548 (790)
+.|..... .-...+++.+.+.+++||.|++++-.+.. ++....++++ .... ++|+++|++
T Consensus 270 ~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~------------~~~~d~~~~~-~~~~-~~~~i~v~N 332 (454)
T COG0486 270 VDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQP------------LDKEDLALIE-LLPK-KKPIIVVLN 332 (454)
T ss_pred EecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC------------CchhhHHHHH-hccc-CCCEEEEEe
Confidence 11111000 00123577889999999999999854311 3455556666 3333 689999987
No 13
>PRK13202 ureB urease subunit beta; Reviewed
Probab=85.23 E-value=1.4 Score=39.89 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=31.4
Q ss_pred EEEEEEEEecCCCCCceEEEEEEecCCCCC----Cccccccccc-------cccccCCCCEEEEEEE
Q 003876 696 FHVQISVTNAGDVDGSHVVMLFARVPKVSQ----GTPEKQLIGF-------DRVHTVAKGSKEISFG 751 (790)
Q Consensus 696 v~vsv~VtNtG~~~G~eVvQlY~~~p~~~~----~~P~k~L~gF-------~kv~L~pGes~~V~~~ 751 (790)
-+++++|+|||+++ +|+=-+..-..+ .-....=.|+ .-|..+|||+++|++.
T Consensus 21 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRP----VQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCc----eEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 36899999999998 888443322111 1011111122 3466889999999884
No 14
>PRK13203 ureB urease subunit beta; Reviewed
Probab=84.83 E-value=1.5 Score=39.67 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=31.4
Q ss_pred EEEEEEEEecCCCCCceEEEEEEecCCCCC----Cccccccccc-------cccccCCCCEEEEEEE
Q 003876 696 FHVQISVTNAGDVDGSHVVMLFARVPKVSQ----GTPEKQLIGF-------DRVHTVAKGSKEISFG 751 (790)
Q Consensus 696 v~vsv~VtNtG~~~G~eVvQlY~~~p~~~~----~~P~k~L~gF-------~kv~L~pGes~~V~~~ 751 (790)
=+++++|+|||+++ +|+=-+..--.+ .--...=.|+ .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 20 ETVTLTVANTGDRP----IQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEEEEEEeCCCCc----eEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 36899999999998 888444322111 1111111122 3466889999999874
No 15
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=82.92 E-value=2.3 Score=38.42 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=31.5
Q ss_pred EEEEEEEEecCCCCCceEEEEEEecCCC----CCCccccccccc-------cccccCCCCEEEEEEE
Q 003876 696 FHVQISVTNAGDVDGSHVVMLFARVPKV----SQGTPEKQLIGF-------DRVHTVAKGSKEISFG 751 (790)
Q Consensus 696 v~vsv~VtNtG~~~G~eVvQlY~~~p~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 751 (790)
=+++++|+|||+++ +|+=-+..-- ...-....=.|| .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRp----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 20 EAVTLKVKNTGDRP----IQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CEEEEEEEeCCCcc----eEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 36899999999998 8884333211 111111111222 3466889999999874
No 16
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=82.50 E-value=2.2 Score=38.53 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=31.4
Q ss_pred EEEEEEEEecCCCCCceEEEEEEecCCCC----CCccccccccc-------cccccCCCCEEEEEEE
Q 003876 696 FHVQISVTNAGDVDGSHVVMLFARVPKVS----QGTPEKQLIGF-------DRVHTVAKGSKEISFG 751 (790)
Q Consensus 696 v~vsv~VtNtG~~~G~eVvQlY~~~p~~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 751 (790)
=+++++|+|||+++ +|+=-+..--. ..--...=.|+ .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 20 KTVSVKVKNTGDRP----IQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred cEEEEEEEeCCCcc----eEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 36899999999998 88843322111 11111111222 3466899999999874
No 17
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=80.97 E-value=2.5 Score=38.05 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=27.6
Q ss_pred eEEEEEEEEecCCCCCceEEEEEEecCCCCC----Cccccccccc-------cccccCCCCEEEEEEE
Q 003876 695 RFHVQISVTNAGDVDGSHVVMLFARVPKVSQ----GTPEKQLIGF-------DRVHTVAKGSKEISFG 751 (790)
Q Consensus 695 ~v~vsv~VtNtG~~~G~eVvQlY~~~p~~~~----~~P~k~L~gF-------~kv~L~pGes~~V~~~ 751 (790)
.=+++++|+|||+++ +|+=-+..-..+ .-....=.|+ .-|..+||++++|++.
T Consensus 18 r~~~~l~V~N~GDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 18 RERITLEVTNTGDRP----IQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp SEEEEEEEEE-SSS-----EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred CcEEEEEEEeCCCcc----eEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 457899999999998 898433321111 0011111122 3466889999999874
No 18
>PRK13201 ureB urease subunit beta; Reviewed
Probab=80.85 E-value=2.5 Score=39.94 Aligned_cols=52 Identities=17% Similarity=0.103 Sum_probs=32.0
Q ss_pred EEEEEEEEecCCCCCceEEEEEEecCCCC----CCccccccccc-------cccccCCCCEEEEEEE
Q 003876 696 FHVQISVTNAGDVDGSHVVMLFARVPKVS----QGTPEKQLIGF-------DRVHTVAKGSKEISFG 751 (790)
Q Consensus 696 v~vsv~VtNtG~~~G~eVvQlY~~~p~~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 751 (790)
=+++++|+|||+++ +||=-+..--. ..--...-.|| .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 82 (136)
T PRK13201 20 PETVIEVENTGDRP----IQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV 82 (136)
T ss_pred CEEEEEEEeCCCcc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999998 88843332111 11111111222 3467899999999984
No 19
>PRK13205 ureB urease subunit beta; Reviewed
Probab=77.08 E-value=3.6 Score=39.69 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=32.4
Q ss_pred EEEEEEEEecCCCCCceEEEEEEecCCCCC----Cccccccccc-------cccccCCCCEEEEEEE
Q 003876 696 FHVQISVTNAGDVDGSHVVMLFARVPKVSQ----GTPEKQLIGF-------DRVHTVAKGSKEISFG 751 (790)
Q Consensus 696 v~vsv~VtNtG~~~G~eVvQlY~~~p~~~~----~~P~k~L~gF-------~kv~L~pGes~~V~~~ 751 (790)
=+++++|+|||+++ +||=-+..-..+ .-....-.|| .-|..+||++++|++.
T Consensus 20 ~~i~L~V~NtGDRP----IQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 20 EAKTIEIINTGDRP----VQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 36899999999998 888443322111 1111111222 3467899999999986
No 20
>PRK13204 ureB urease subunit beta; Reviewed
Probab=76.89 E-value=3.7 Score=39.75 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=31.6
Q ss_pred EEEEEEEEecCCCCCceEEEEEEecCCCC----CCccccccccc-------cccccCCCCEEEEEEE
Q 003876 696 FHVQISVTNAGDVDGSHVVMLFARVPKVS----QGTPEKQLIGF-------DRVHTVAKGSKEISFG 751 (790)
Q Consensus 696 v~vsv~VtNtG~~~G~eVvQlY~~~p~~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 751 (790)
=.++++|+|||++. +||=-+..--. ..--...=.|+ .-|..+|||+++|++.
T Consensus 43 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 43 PRTTLTVRNTGDRP----IQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 35899999999998 88843332111 11111111222 3466899999999985
No 21
>COG1470 Predicted membrane protein [Function unknown]
Probab=76.28 E-value=8.3 Score=44.00 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=46.9
Q ss_pred ceEEEEEEEEecCCCCCceEEEEEEe-cCCC-CCCccccccccccccccCCCCEEEEEEEecCCCCceEEeCCCcEEecC
Q 003876 694 LRFHVQISVTNAGDVDGSHVVMLFAR-VPKV-SQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANKHGRRILPL 771 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~G~eVvQlY~~-~p~~-~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~ 771 (790)
.+..++|++.|-|+-+ +++. |=++ .|.. ...--.-+ -.-.||.|+|||+++|++.+.+.. | .++
T Consensus 284 ~t~sf~V~IeN~g~~~-d~y~-Le~~g~pe~w~~~Fteg~-~~vt~vkL~~gE~kdvtleV~ps~-----n------a~p 349 (513)
T COG1470 284 TTASFTVSIENRGKQD-DEYA-LELSGLPEGWTAEFTEGE-LRVTSVKLKPGEEKDVTLEVYPSL-----N------ATP 349 (513)
T ss_pred CceEEEEEEccCCCCC-ceeE-EEeccCCCCcceEEeeCc-eEEEEEEecCCCceEEEEEEecCC-----C------CCC
Confidence 5678999999998765 3322 2222 2322 11000001 112678899999999999998843 1 468
Q ss_pred ceEEEEEecCCc
Q 003876 772 GNHVLMVGELRH 783 (790)
Q Consensus 772 G~y~i~vG~~s~ 783 (790)
|+|.+.|-.++.
T Consensus 350 G~Ynv~I~A~s~ 361 (513)
T COG1470 350 GTYNVTITASSS 361 (513)
T ss_pred CceeEEEEEecc
Confidence 888888766554
No 22
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=75.51 E-value=4.1 Score=36.67 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=30.9
Q ss_pred eEEEEEEEEecCCCCCceEEEEEEecC--CC--CC--Cccc---cc--cccccccccCCCCEEEEEEE
Q 003876 695 RFHVQISVTNAGDVDGSHVVMLFARVP--KV--SQ--GTPE---KQ--LIGFDRVHTVAKGSKEISFG 751 (790)
Q Consensus 695 ~v~vsv~VtNtG~~~G~eVvQlY~~~p--~~--~~--~~P~---k~--L~gF~kv~L~pGes~~V~~~ 751 (790)
.-+++++|+|||++. +|+=-+.. .. .. .|.. ++ .-.=.-|..+||+.|+|++.
T Consensus 19 r~~~~i~V~NtGDRP----IQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV 82 (106)
T COG0832 19 RPTVTIEVANTGDRP----IQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELV 82 (106)
T ss_pred CcceEEEEeecCCCc----eEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEE
Confidence 346788899999998 78733221 11 11 0110 00 11124567899999999984
No 23
>PRK13198 ureB urease subunit beta; Reviewed
Probab=75.35 E-value=4.3 Score=39.25 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=31.8
Q ss_pred EEEEEEEEecCCCCCceEEEEEEecCCCC----CCccccccccc-------cccccCCCCEEEEEEE
Q 003876 696 FHVQISVTNAGDVDGSHVVMLFARVPKVS----QGTPEKQLIGF-------DRVHTVAKGSKEISFG 751 (790)
Q Consensus 696 v~vsv~VtNtG~~~G~eVvQlY~~~p~~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 751 (790)
=+++++|+|||+++ +||=-+..--. ..--...-.|+ .-|..+||++++|++.
T Consensus 48 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 48 PVTKVKVRNTGDRP----IQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 36899999999998 88843332111 11111111222 3467899999999884
No 24
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=69.20 E-value=11 Score=35.02 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=38.1
Q ss_pred EEEEEEEecCCCCCceEEEEEEecCCC-CCCcccccccccccc-ccCCCCEEEEEEEecC
Q 003876 697 HVQISVTNAGDVDGSHVVMLFARVPKV-SQGTPEKQLIGFDRV-HTVAKGSKEISFGVDP 754 (790)
Q Consensus 697 ~vsv~VtNtG~~~G~eVvQlY~~~p~~-~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~ 754 (790)
+.+++|+|+|+ -.-.+|+.+..... ....+...|.=+=.. .|+||++++|.| +..
T Consensus 17 ~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 17 SASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRG 73 (122)
T ss_dssp EEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EEC
T ss_pred EEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Eec
Confidence 57999999998 46778999987211 112333445555555 599999999999 443
No 25
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=68.41 E-value=6.6 Score=39.91 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=31.4
Q ss_pred EEEEEEEEecCCCCCceEEEEEEecCCCC----CCccccccccc-------cccccCCCCEEEEEEE
Q 003876 696 FHVQISVTNAGDVDGSHVVMLFARVPKVS----QGTPEKQLIGF-------DRVHTVAKGSKEISFG 751 (790)
Q Consensus 696 v~vsv~VtNtG~~~G~eVvQlY~~~p~~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 751 (790)
=+++++|+|||+++ +|+=-+..--. ..-..+.=.|| .-|..+||++++|++.
T Consensus 129 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 129 PAVTLDVTNTGDRP----IQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 35899999999998 88844332211 11111111222 3466789999998874
No 26
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=68.39 E-value=20 Score=32.99 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=31.4
Q ss_pred eEEEEEEEEecCCCCCceEEEEE-----EecCCCC--CCcccc---ccccc--cccccCCCCEEEEEEEecCC
Q 003876 695 RFHVQISVTNAGDVDGSHVVMLF-----ARVPKVS--QGTPEK---QLIGF--DRVHTVAKGSKEISFGVDPC 755 (790)
Q Consensus 695 ~v~vsv~VtNtG~~~G~eVvQlY-----~~~p~~~--~~~P~k---~L~gF--~kv~L~pGes~~V~~~l~~~ 755 (790)
..+.+++++|.|+.+=..-+... ..+.... ...+.. ....| .++.|+||++++|+++++..
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 47899999999986644333222 1110111 001110 02333 46679999999999999983
No 27
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=66.99 E-value=11 Score=39.11 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=26.3
Q ss_pred EEEecCCCCCceEEEEEEecCCCCC--Ccc--------ccccccccccccCCCCEEEEEEEecC
Q 003876 701 SVTNAGDVDGSHVVMLFARVPKVSQ--GTP--------EKQLIGFDRVHTVAKGSKEISFGVDP 754 (790)
Q Consensus 701 ~VtNtG~~~G~eVvQlY~~~p~~~~--~~P--------~k~L~gF~kv~L~pGes~~V~~~l~~ 754 (790)
++-|.|. |.-+++||-+.+.... ..| .+.+....++.|.||||-+ |.+
T Consensus 111 DIINRGG--G~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiT----L~P 168 (225)
T PF07385_consen 111 DIINRGG--GNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESIT----LPP 168 (225)
T ss_dssp EEEEEEE--S-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEE----E-T
T ss_pred heeecCC--ceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEe----eCC
Confidence 3456654 7788888888764432 122 2457889999999999854 666
No 28
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=66.07 E-value=18 Score=35.31 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=43.0
Q ss_pred ceEEEEEEEEecCCCCCceEEEEEEecCCCCCCccccccccccccc-cCCCCEEEEEEEecCC
Q 003876 694 LRFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVH-TVAKGSKEISFGVDPC 755 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~G~eVvQlY~~~p~~~~~~P~k~L~gF~kv~-L~pGes~~V~~~l~~~ 755 (790)
..+.|.++.+|+++. ++--+-+..+.- ..-.++++|.++. |+||++.++.+-|+.+
T Consensus 85 ~mvsIql~ftN~s~~---~i~~I~i~~k~l---~~g~~i~~F~~I~~L~pg~s~t~~lgIDF~ 141 (145)
T PF14796_consen 85 SMVSIQLTFTNNSDE---PIKNIHIGEKKL---PAGMRIHEFPEIESLEPGASVTVSLGIDFN 141 (145)
T ss_pred CcEEEEEEEEecCCC---eecceEECCCCC---CCCcEeeccCcccccCCCCeEEEEEEEecc
Confidence 357899999999874 555556665532 2234799999996 9999999999999874
No 29
>PRK13986 urease subunit alpha; Provisional
Probab=64.97 E-value=8.5 Score=39.62 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=31.5
Q ss_pred EEEEEEEEecCCCCCceEEEEEEecCCCCC----Cccccccccc-------cccccCCCCEEEEEEE
Q 003876 696 FHVQISVTNAGDVDGSHVVMLFARVPKVSQ----GTPEKQLIGF-------DRVHTVAKGSKEISFG 751 (790)
Q Consensus 696 v~vsv~VtNtG~~~G~eVvQlY~~~p~~~~----~~P~k~L~gF-------~kv~L~pGes~~V~~~ 751 (790)
=+++++|+|||+++ +|+=-+..--.+ .--...=.|| .-|..+||++++|++.
T Consensus 125 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T PRK13986 125 KAVSVKVKNVGDRP----VQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187 (225)
T ss_pred cEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 36899999999998 888433321111 1011111122 3467899999999884
No 30
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=63.80 E-value=22 Score=33.53 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=37.7
Q ss_pred ceEEEEEEEEecCCCCCceEEEEEEecCCC-----------------CCCccccccccccc-cccCCCCEEEEEEEecCC
Q 003876 694 LRFHVQISVTNAGDVDGSHVVMLFARVPKV-----------------SQGTPEKQLIGFDR-VHTVAKGSKEISFGVDPC 755 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~G~eVvQlY~~~p~~-----------------~~~~P~k~L~gF~k-v~L~pGes~~V~~~l~~~ 755 (790)
...+++++|+|+++-+- .+++++..-.+ +...+..+|....+ |.|+|+|+++|+|+|..-
T Consensus 27 q~~~l~v~i~N~s~~~~--tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEI--TVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCE--EEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEcC
Confidence 45678888888876443 34444432211 11124445555543 689999999999999863
No 31
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=63.74 E-value=14 Score=33.50 Aligned_cols=60 Identities=18% Similarity=0.107 Sum_probs=36.1
Q ss_pred ceEEEEEEEEecCCCCCceEEEEEEe---cCCCCCCccccccccccccccCCCCEEEEEEEecCC
Q 003876 694 LRFHVQISVTNAGDVDGSHVVMLFAR---VPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPC 755 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~G~eVvQlY~~---~p~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~ 755 (790)
..++|+++++|..+..-+. |++.+. -.++...+ ....+-...+.|+|||++++++.+.+.
T Consensus 15 ~d~~v~v~~~N~~~~~l~~-v~~~l~~~~v~ytG~~~-~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRN-VSLNLCAFTVEYTGLTR-DQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp SEEEEEEEEEE-SSS-EEC-EEEEEEEEEEECTTTEE-EEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred CCEEEEEEEEeCCcCcccc-ceeEEEEEEEEECCccc-ccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 4689999999998887444 333332 12223211 123344556679999999999999874
No 32
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=59.93 E-value=31 Score=30.34 Aligned_cols=54 Identities=9% Similarity=0.199 Sum_probs=34.2
Q ss_pred EEEEEEEecCCCCCceEEEEEEecCCCCCCccccccccccccccCCCCEEEEEEEecCCCCceEEeC
Q 003876 697 HVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANK 763 (790)
Q Consensus 697 ~vsv~VtNtG~~~G~eVvQlY~~~p~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~ 763 (790)
.+.++++|.|+.+ -.++||-.. . ....| .++.|+||++.++.+.+.. .-.+||-
T Consensus 21 ~l~l~l~N~g~~~--~~~~v~~~~-y-~~~~~-------~~~~v~ag~~~~~~w~l~~--s~gwYDl 74 (89)
T PF05506_consen 21 NLRLTLSNPGSAA--VTFTVYDNA-Y-GGGGP-------WTYTVAAGQTVSLTWPLAA--SGGWYDL 74 (89)
T ss_pred EEEEEEEeCCCCc--EEEEEEeCC-c-CCCCC-------EEEEECCCCEEEEEEeecC--CCCcEEE
Confidence 6889999986543 234444321 1 11123 5678999999999998853 2456663
No 33
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.78 E-value=71 Score=28.51 Aligned_cols=39 Identities=31% Similarity=0.300 Sum_probs=28.5
Q ss_pred HHHhhcCCEEEEEEecCCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 003876 493 VRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILV 546 (790)
Q Consensus 493 ~~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~va~~~~~~vVVV 546 (790)
.+..+++|+||++++.- ...-...+++.++..++|++.+
T Consensus 43 ~~~i~~aD~VIv~t~~v---------------sH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 43 PSKIKKADLVIVFTDYV---------------SHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHhcCCCCEEEEEeCCc---------------ChHHHHHHHHHHHHcCCcEEEE
Confidence 45678999999998642 3345567888888877887754
No 34
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=57.24 E-value=29 Score=26.61 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=25.7
Q ss_pred EEEEEecCCCCCceEEEEEEecCCCCCCccccccccccccccCCCCEEEEEEE
Q 003876 699 QISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFG 751 (790)
Q Consensus 699 sv~VtNtG~~~G~eVvQlY~~~p~~~~~~P~k~L~gF~kv~L~pGes~~V~~~ 751 (790)
+++++|+|+.. .+++=-.....= -...+.|-.|+|||+..++++
T Consensus 1 ~F~~~N~g~~~----L~I~~v~tsCgC-----t~~~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 1 TFEFTNTGDSP----LVITDVQTSCGC-----TTAEYSKKPIAPGESGKIKVT 44 (45)
T ss_pred CEEEEECCCCc----EEEEEeeEccCC-----EEeeCCcceECCCCEEEEEEE
Confidence 37889987654 333322222111 112345556999999998875
No 35
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=56.62 E-value=2.7e+02 Score=29.47 Aligned_cols=86 Identities=16% Similarity=0.195 Sum_probs=53.2
Q ss_pred HHHHhCCCcEEEccchHHHHhhhccccCCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC
Q 003876 313 ARNEWGFKGYITSDCDAVATIFEYQNYTKTHEDSAAGVLKADKGKVQEKDIDRALLNLFSVQLRLGLFNGDPRKGKYGKL 392 (790)
Q Consensus 313 LR~e~gF~G~VvSD~~~~~~~~~~~~~~~~~~~a~~~al~A~~g~i~~~~id~av~Ril~~k~~~Glf~~~p~~~~~~~~ 392 (790)
+-++.||+.+.+||+..+... ++ . +.+.++.+.+-..+++|.+.-. .-+.- + .+.
T Consensus 24 ~~e~~G~~ai~~s~~~~~~s~----G~--p-----------D~~~~~~~e~~~~~~~I~~~~~-~Pv~~-D------~~~ 78 (243)
T cd00377 24 LAERAGFKAIYTSGAGVAASL----GL--P-----------DGGLLTLDEVLAAVRRIARAVD-LPVIA-D------ADT 78 (243)
T ss_pred HHHHcCCCEEEeccHHHHHhc----CC--C-----------CCCcCCHHHHHHHHHHHHhhcc-CCEEE-E------cCC
Confidence 557789999999999876543 11 1 5667788888888888876531 11111 0 000
Q ss_pred CCCccCcHHHHHHHHHHHHhhhhhhccCCCccc
Q 003876 393 GPDDVCTSEHKKLALDAARQGIVLLKNDKKFLP 425 (790)
Q Consensus 393 ~~~~v~~~~h~~lA~e~A~esiVLLKN~~~~LP 425 (790)
+.. +..+-.+.++++.+.++.-++=|++..|
T Consensus 79 G~g--~~~~~~~~v~~~~~~G~~gv~iED~~~~ 109 (243)
T cd00377 79 GYG--NALNVARTVRELEEAGAAGIHIEDQVGP 109 (243)
T ss_pred CCC--CHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence 111 1245567788888888877766665554
No 36
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=56.47 E-value=7.7 Score=42.72 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=34.8
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCHH--HHHHHHHHHHhCCCC-EEEEEeCCCccccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQ--QMSLVTSVARTSKRP-VILVLTGGGPLDVS 556 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~--q~~LI~~va~~~~~~-vVVVl~~g~P~~l~ 556 (790)
+..++||+||+..|... .+|.+|.++---.. -.++++++.+. .+| .+++ +.++|+|+.
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~dll~~N~~I~~~i~~~i~~~-a~~~~ivi-vvtNPvDv~ 116 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRADLLTKNTPIFKATGEALSEY-AKPTVKVL-VIGNPVNTN 116 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHHHHHHHHHHHHHHHHHhh-CCCCeEEE-EeCCchHHH
Confidence 45689999999998642 34556755321111 13455566666 445 4444 446999873
No 37
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=55.49 E-value=11 Score=41.65 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=37.2
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCHH--HHHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQ--QMSLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~--q~~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
+..++||+||+..|... .+|.+|.++--... -.++++++.+.+.++.|+++. ++|+|+-
T Consensus 75 ~~~~daDvVVitAG~~~---k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~ 135 (323)
T TIGR01759 75 EAFKDVDAALLVGAFPR---KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANTN 135 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHH
Confidence 46789999999999642 35667765422111 135566676663336666655 6999873
No 38
>COG1470 Predicted membrane protein [Function unknown]
Probab=55.20 E-value=39 Score=38.84 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=39.6
Q ss_pred ceEEEEEEEEecCCCCCceEEEEEEecCCCCCCcccccccccccc-ccCCCCEEEEEEEecCCC
Q 003876 694 LRFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRV-HTVAKGSKEISFGVDPCE 756 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~G~eVvQlY~~~p~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~ 756 (790)
+..++.+.|.|+|..+=.. +-|=+..|..= ..+.-.+ ++ .|+|||+++|+++++.-+
T Consensus 397 ee~~i~i~I~NsGna~Ltd-Ikl~v~~PqgW----ei~Vd~~-~I~sL~pge~~tV~ltI~vP~ 454 (513)
T COG1470 397 EEKTIRISIENSGNAPLTD-IKLTVNGPQGW----EIEVDES-TIPSLEPGESKTVSLTITVPE 454 (513)
T ss_pred ccceEEEEEEecCCCccce-eeEEecCCccc----eEEECcc-cccccCCCCcceEEEEEEcCC
Confidence 3467899999999777555 45556666541 1234444 55 599999999999998743
No 39
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=54.69 E-value=33 Score=33.29 Aligned_cols=59 Identities=25% Similarity=0.189 Sum_probs=37.0
Q ss_pred ceEEEEEEEEecCCCCCceEEEEEEec---CCCCC---Ccccccccccccc------ccCCCCEEEEEEEec
Q 003876 694 LRFHVQISVTNAGDVDGSHVVMLFARV---PKVSQ---GTPEKQLIGFDRV------HTVAKGSKEISFGVD 753 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~G~eVvQlY~~~---p~~~~---~~P~k~L~gF~kv------~L~pGes~~V~~~l~ 753 (790)
+.+.|..+|||+|+.+=+++ ++=++. +.... ..=..++.+|.+. .|+|||+++-++.++
T Consensus 62 ~~~~v~g~V~N~g~~~i~~c-~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~ 132 (149)
T PF09624_consen 62 ESFYVDGTVTNTGKFTIKKC-KITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFP 132 (149)
T ss_pred cEEEEEEEEEECCCCEeeEE-EEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEec
Confidence 67999999999999876553 222222 11111 1122445556322 299999999998886
No 40
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=52.33 E-value=86 Score=29.59 Aligned_cols=57 Identities=19% Similarity=0.107 Sum_probs=37.5
Q ss_pred EEEEEEEEecCCC----CCceEEEEEEecCCCC-CC-ccccccccccccccCCCCEEEEEEEecC
Q 003876 696 FHVQISVTNAGDV----DGSHVVMLFARVPKVS-QG-TPEKQLIGFDRVHTVAKGSKEISFGVDP 754 (790)
Q Consensus 696 v~vsv~VtNtG~~----~G~eVvQlY~~~p~~~-~~-~P~k~L~gF~kv~L~pGes~~V~~~l~~ 754 (790)
-.+.+++||+|+. .|.=-|++. ..... +. ...++-..=+.|.|+||++....|....
T Consensus 20 ~~~~l~~tN~s~~~C~l~G~P~v~~~--~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 20 RHATLTFTNTSDTPCTLYGYPGVALV--DADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred cEEEEEEEECCCCcEEeccCCcEEEE--CCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 4789999999985 566566665 22222 11 1222333456778999999998888775
No 41
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=50.74 E-value=72 Score=36.77 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=59.0
Q ss_pred CcccCCCCCCCeEEEEccCcccccccCCCccCCCCCcCcHHHHHHhhhcc--eeEeccCCCCCC-CCchhHHHHHHHhhc
Q 003876 422 KFLPLNKNAVSSLAIIGPLVNNISQMGGGYTGIPCSPKSLLRGLEAYVSK--THYASGCHDVPC-NSDAGFHEAVRIAKK 498 (790)
Q Consensus 422 ~~LPL~~~~~~kIaViGp~a~~~~~~~G~~~g~~~~~~t~~egL~~~~~~--~~y~~g~~~~~~-~~~~~~~~a~~~a~~ 498 (790)
.-||.-+ ++|+||....... ...++..++.+.+. +.+.+ + .+.. .....+.+|++.+..
T Consensus 129 ~~lP~~p---~~I~viTs~~gAa-------------~~D~~~~~~~r~p~~~~~~~~-~-~vQG~~A~~~i~~al~~~~~ 190 (438)
T PRK00286 129 KPLPFFP---KRIGVITSPTGAA-------------IRDILTVLRRRFPLVEVIIYP-T-LVQGEGAAASIVAAIERANA 190 (438)
T ss_pred CCCCCCC---CEEEEEeCCccHH-------------HHHHHHHHHhcCCCCeEEEec-C-cCcCccHHHHHHHHHHHhcC
Confidence 3466554 6999997543321 12345555555442 22111 1 1111 113445666666655
Q ss_pred --CCEEEEEEecCCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCccccccc
Q 003876 499 --ADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVSFA 558 (790)
Q Consensus 499 --aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~va~~~~~~vVVVl~~g~P~~l~~~ 558 (790)
.|++|++=|. +...+|. +=++.++++++++. ..|||.-+ |.=.|.+-.
T Consensus 191 ~~~Dviii~RGG--------GS~eDL~-~Fn~e~v~~ai~~~-~~Pvis~I--GHE~D~tl~ 240 (438)
T PRK00286 191 RGEDVLIVARGG--------GSLEDLW-AFNDEAVARAIAAS-RIPVISAV--GHETDFTIA 240 (438)
T ss_pred CCCCEEEEecCC--------CCHHHhh-ccCcHHHHHHHHcC-CCCEEEec--cCCCCccHH
Confidence 5999987653 3333442 44678899999887 78877543 666666543
No 42
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=50.22 E-value=32 Score=32.64 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=21.2
Q ss_pred cCCCCEEEEEEEecC---CCCceEEeC-CCcEEecCceE
Q 003876 740 TVAKGSKEISFGVDP---CEQLSIANK-HGRRILPLGNH 774 (790)
Q Consensus 740 L~pGes~~V~~~l~~---~~~ls~~d~-~~~~~~~~G~y 774 (790)
|.|||+.+|+|+.+. ..+..|+=. =|.|.+-.|.+
T Consensus 85 iggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~~MkG~l 123 (125)
T TIGR02695 85 IGGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWAMMRGTV 123 (125)
T ss_pred cCCCceEEEEEECCCCCCCCcceEEEcCCCcHHhceEEE
Confidence 789999999999852 223444432 24454444444
No 43
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=50.20 E-value=82 Score=36.35 Aligned_cols=107 Identities=18% Similarity=0.153 Sum_probs=57.8
Q ss_pred CcccCCCCCCCeEEEEccCcccccccCCCccCCCCCcCcHHHHHHhhhcc--eeEeccCCCCCC-CCchhHHHHHHHhhc
Q 003876 422 KFLPLNKNAVSSLAIIGPLVNNISQMGGGYTGIPCSPKSLLRGLEAYVSK--THYASGCHDVPC-NSDAGFHEAVRIAKK 498 (790)
Q Consensus 422 ~~LPL~~~~~~kIaViGp~a~~~~~~~G~~~g~~~~~~t~~egL~~~~~~--~~y~~g~~~~~~-~~~~~~~~a~~~a~~ 498 (790)
.-||.-+ ++|+||....... ...++..++.+.+. +...+- .+.. .....+..|++.+..
T Consensus 123 ~~lP~~p---~~i~vits~~~aa-------------~~D~~~~~~~r~p~~~~~~~~~--~vQG~~a~~~i~~al~~~~~ 184 (432)
T TIGR00237 123 KPLPHFP---KRVGVITSQTGAA-------------LADILHILKRRDPSLKVVIYPT--LVQGEGAVQSIVESIELANT 184 (432)
T ss_pred CCCCCCC---CEEEEEeCCccHH-------------HHHHHHHHHhhCCCceEEEecc--cccCccHHHHHHHHHHHhhc
Confidence 3566654 5999997543221 12345555555542 211110 1111 112345555554443
Q ss_pred ---CCEEEEEEecCCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCccccccc
Q 003876 499 ---ADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVSFA 558 (790)
Q Consensus 499 ---aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~va~~~~~~vVVVl~~g~P~~l~~~ 558 (790)
.|++||+=|. +...+| .+=++..+++++++. ..|||.- .|.=.|.+-.
T Consensus 185 ~~~~dviii~RGG--------Gs~eDL-~~Fn~e~~~rai~~~-~~Pvis~--iGHe~D~ti~ 235 (432)
T TIGR00237 185 KNECDVLIVGRGG--------GSLEDL-WSFNDEKVARAIFLS-KIPIISA--VGHETDFTIS 235 (432)
T ss_pred CCCCCEEEEecCC--------CCHHHh-hhcCcHHHHHHHHcC-CCCEEEe--cCcCCCccHH
Confidence 6999987653 333343 244678899999876 7887754 3776766543
No 44
>COG1160 Predicted GTPases [General function prediction only]
Probab=47.76 E-value=46 Score=38.26 Aligned_cols=46 Identities=26% Similarity=0.435 Sum_probs=32.3
Q ss_pred HHHHHHhhcCCEEEEEEecCCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEe
Q 003876 490 HEAVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLT 548 (790)
Q Consensus 490 ~~a~~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~va~~~~~~vVVVl~ 548 (790)
+++..++++||++|+++-.. +| +.....++.+-+... ++|+|+|+|
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~-----~G-------it~~D~~ia~~Lr~~-~kpviLvvN 120 (444)
T COG1160 75 EQALIAIEEADVILFVVDGR-----EG-------ITPADEEIAKILRRS-KKPVILVVN 120 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCC-----CC-------CCHHHHHHHHHHHhc-CCCEEEEEE
Confidence 45667889999999999532 22 344555566666644 799999998
No 45
>PLN00135 malate dehydrogenase
Probab=47.22 E-value=17 Score=39.98 Aligned_cols=59 Identities=12% Similarity=0.263 Sum_probs=36.2
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCHH--HHHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQ--QMSLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~--q~~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
+..++||+||+..|... .+|.+|.++---.. -.++++++.+.+++..++++. ++|+|+-
T Consensus 54 ~~~~daDiVVitAG~~~---k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivv-sNPvDv~ 114 (309)
T PLN00135 54 EACKGVNIAVMVGGFPR---KEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVV-ANPANTN 114 (309)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-CCcHHHH
Confidence 45689999999999753 34556654321111 134556666632556666555 6999873
No 46
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=46.93 E-value=18 Score=40.05 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=35.3
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCHH--HHHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQ--QMSLVTSVARTSKRPVILVLTGGGPLDV 555 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~--q~~LI~~va~~~~~~vVVVl~~g~P~~l 555 (790)
+..++||+||+..|... .+|.+|.++---.. -.+++.++.+.++++.++++. ++|+|+
T Consensus 72 ~~~~~aDiVVitAG~~~---~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 131 (323)
T cd00704 72 EAFKDVDVAILVGAFPR---KPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANT 131 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHH
Confidence 56789999999998642 34556655321111 134555666653356665555 699986
No 47
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=46.73 E-value=37 Score=30.68 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=21.7
Q ss_pred EEEEEEEecCCCCCceEEEEEEecCCCCCCccccccccccccccCCCCEEEEEEEe
Q 003876 697 HVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGV 752 (790)
Q Consensus 697 ~vsv~VtNtG~~~G~eVvQlY~~~p~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l 752 (790)
.|+++++|.|... .++ .+.. .+ ....|.||++++++|+-
T Consensus 44 ~v~l~~~N~~~~~-h~~---~i~~------------~~-~~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 44 PVTLTFTNNDSRP-HEF---VIPD------------LG-ISKVLPPGETATVTFTP 82 (104)
T ss_dssp EEEEEEEE-SSS--EEE---EEGG------------GT-EEEEE-TT-EEEEEEEE
T ss_pred eEEEEEEECCCCc-EEE---EECC------------Cc-eEEEECCCCEEEEEEcC
Confidence 4678889998875 222 1111 12 23569999999998853
No 48
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=44.48 E-value=18 Score=40.02 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=35.3
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCHHH----HHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ----MSLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
+..++||+||++.|... .+|.+|.++- ..- .+++.++.+.+.+..++++. ++|+|+-
T Consensus 74 ~~~~daDivvitaG~~~---k~g~tR~dll--~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~ 134 (322)
T cd01338 74 VAFKDADWALLVGAKPR---GPGMERADLL--KANGKIFTAQGKALNDVASRDVKVLVV-GNPCNTN 134 (322)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHhhCCCCeEEEEe-cCcHHHH
Confidence 46789999999998653 3455665542 222 34555666662235665554 6999873
No 49
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=44.24 E-value=6.7 Score=37.84 Aligned_cols=55 Identities=25% Similarity=0.458 Sum_probs=32.9
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCHHHH----HHHHHHHHhCCCCEEEEEeCCCcccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQM----SLVTSVARTSKRPVILVLTGGGPLDV 555 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~----~LI~~va~~~~~~vVVVl~~g~P~~l 555 (790)
+..++||+||++.|... .+|.+|.++- .... ++.+++.+. +++.++++. .+|+++
T Consensus 65 ~~~~~aDivvitag~~~---~~g~sR~~ll--~~N~~i~~~~~~~i~~~-~p~~~vivv-tNPvd~ 123 (141)
T PF00056_consen 65 EALKDADIVVITAGVPR---KPGMSRLDLL--EANAKIVKEIAKKIAKY-APDAIVIVV-TNPVDV 123 (141)
T ss_dssp GGGTTESEEEETTSTSS---STTSSHHHHH--HHHHHHHHHHHHHHHHH-STTSEEEE--SSSHHH
T ss_pred cccccccEEEEeccccc---cccccHHHHH--HHhHhHHHHHHHHHHHh-CCccEEEEe-CCcHHH
Confidence 35689999999988642 4455665432 2222 345556666 444554444 699986
No 50
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=43.74 E-value=17 Score=42.01 Aligned_cols=58 Identities=16% Similarity=0.291 Sum_probs=35.5
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCHHH--HHHHHHHHH-hCCCCEEEEEeCCCccccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ--MSLVTSVAR-TSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q--~~LI~~va~-~~~~~vVVVl~~g~P~~l~ 556 (790)
+..++||+||+..|... .+|.+|.++--...+ .++.+++.+ . +++.+|++. ++|+|+.
T Consensus 172 e~~kdaDiVVitAG~pr---kpG~tR~dLl~~N~~I~k~i~~~I~~~a-~p~~ivIVV-sNPvDv~ 232 (444)
T PLN00112 172 EVFQDAEWALLIGAKPR---GPGMERADLLDINGQIFAEQGKALNEVA-SRNVKVIVV-GNPCNTN 232 (444)
T ss_pred HHhCcCCEEEECCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEEc-CCcHHHH
Confidence 45689999999988642 356677654211111 244555655 3 556665554 7999874
No 51
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=43.02 E-value=1.6e+02 Score=25.42 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=46.4
Q ss_pred eEEEEEEEEec-C-CCCCceEEEEEEecCCCCCCccccccccccccccCCCCEEEEEEEecCCCCceEEeCCCcEEecCc
Q 003876 695 RFHVQISVTNA-G-DVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANKHGRRILPLG 772 (790)
Q Consensus 695 ~v~vsv~VtNt-G-~~~G~eVvQlY~~~p~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G 772 (790)
.+++++.+-|. . =..|. -+++|++..... . .+.....-.|.||++..|+|.+.. +.+ +.+..+++++..|
T Consensus 5 ~f~A~i~il~~~~~i~~Gy-~~~l~~~t~~~~----~-~i~~i~~~~l~~g~~~~v~i~f~~-~p~-~~e~~grf~lr~g 76 (87)
T cd03708 5 EFEAEILVLHHPTTISPGY-QATVHIGSIRQT----A-RIVSIDKDVLRTGDRALVRFRFLY-HPE-YLREGQRLIFREG 76 (87)
T ss_pred EEEEEEEEEcCCCcccCCC-EeEEEEcCCEEE----E-EEEeccHhhccCCCeEEEEEEECC-CCc-EEccCCeEEEECC
Confidence 46666666662 2 33444 466777654321 1 111112246899999999999643 345 5566678888888
Q ss_pred eEEEEEec
Q 003876 773 NHVLMVGE 780 (790)
Q Consensus 773 ~y~i~vG~ 780 (790)
.++-+|-
T Consensus 77 -~tva~G~ 83 (87)
T cd03708 77 -RTKGVGE 83 (87)
T ss_pred -CcEEEEE
Confidence 6777763
No 52
>PRK05442 malate dehydrogenase; Provisional
Probab=42.99 E-value=21 Score=39.57 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=35.2
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCHHH--HHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ--MSLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q--~~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
+..++||+||+..|... .+|.+|.++--.... .++++++.+.++++.++++. ++|+|+-
T Consensus 76 ~~~~daDiVVitaG~~~---k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~ 136 (326)
T PRK05442 76 VAFKDADVALLVGARPR---GPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVV-GNPANTN 136 (326)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-CCchHHH
Confidence 46789999999998642 345677654211111 34555666643345555544 6999873
No 53
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=42.15 E-value=20 Score=39.18 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=36.6
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCHH--HHHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQ--QMSLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~--q~~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
+..++||+||+++|... .+|.+|.++..-.. -.++.+++.+. +++.+|++ .++|.++-
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~-~p~~~viv-~sNP~d~~ 121 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKY-GPDAIILV-VSNPVDIL 121 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEE-ccChHHHH
Confidence 46789999999999753 35567765432211 23556666666 45566544 46999873
No 54
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=40.95 E-value=52 Score=36.75 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=30.6
Q ss_pred ceEEEEEEEEecCCCCCceEEEE--E----EecCCCCC-----Ccccccccccc------ccccCCCCEEEEEEEec
Q 003876 694 LRFHVQISVTNAGDVDGSHVVML--F----ARVPKVSQ-----GTPEKQLIGFD------RVHTVAKGSKEISFGVD 753 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~G~eVvQl--Y----~~~p~~~~-----~~P~k~L~gF~------kv~L~pGes~~V~~~l~ 753 (790)
.+++++++|||.|+-+ |+| | +++.+..+ ..|. +|.+-+ .--++|||+++|++++.
T Consensus 263 R~l~~~l~VtN~g~~p----v~LgeF~tA~vrFln~~v~~~~~~~P~-~l~A~~gL~vs~~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSP----VRLGEFNTANVRFLNPDVPTDDPDYPD-ELLAERGLSVSDNSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp SEEEEEEEEEEESSS-----BEEEEEESSS-EEE-TTT-SS-S---T-TTEETT-EEES--S-B-TT-EEEEEEEEE
T ss_pred cEEEEEEEEEcCCCCc----eEeeeEEeccEEEeCcccccCCCCCch-hhhccCcceeCCCCCcCCCceEEEEEEee
Confidence 5799999999987644 554 1 22322221 1233 555542 22489999999999984
No 55
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=39.89 E-value=26 Score=38.73 Aligned_cols=57 Identities=18% Similarity=0.307 Sum_probs=34.8
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCHHH----HHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ----MSLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
+..+++|+||+..|... .++.+|.++- ..- .++++++.+.++++.|+++. ++|+|+-
T Consensus 71 ~~~~~aDiVVitAG~~~---~~~~tr~~ll--~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv~ 131 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR---KEGMERRDLL--SKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANTN 131 (324)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHH
Confidence 46689999999998652 2344554432 222 34555666653355666655 5999873
No 56
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=39.35 E-value=34 Score=37.70 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=34.9
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCHHH---HHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ---MSLVTSVARTSKRPVILVLTGGGPLDV 555 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q---~~LI~~va~~~~~~vVVVl~~g~P~~l 555 (790)
+..++||+||++.|... .+|.+|.++ |+.+- .+.++++.+. +++.++++ ..+|+|+
T Consensus 63 ~~~~daDivvitaG~~~---~~g~~R~dl-l~~N~~I~~~i~~~i~~~-~p~~iiiv-vsNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPR---KPGMTRDDL-FNVNAGIVKDLVAAVAES-CPKAMILV-ITNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCC---CCCccHHHH-HHHhHHHHHHHHHHHHHh-CCCeEEEE-ecCchhh
Confidence 46789999999999643 345666654 22221 3445566666 45566544 4799984
No 57
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=38.94 E-value=30 Score=38.08 Aligned_cols=58 Identities=22% Similarity=0.353 Sum_probs=37.2
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCH--HHHHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPG--QQMSLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~--~q~~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
+..+.||+||++.|... ..|-+|.+|---. --.++.+++.+. +++.++++. .+|+|+.
T Consensus 65 ~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVv-tNPvD~~ 124 (313)
T COG0039 65 EDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKY-APDAIVLVV-TNPVDIL 124 (313)
T ss_pred hhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCeEEEEe-cCcHHHH
Confidence 45689999999998753 4556676542111 124566677776 445665544 6999874
No 58
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=38.64 E-value=96 Score=25.46 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHhC-CCCEEEEEe
Q 003876 525 PGQQMSLVTSVARTS-KRPVILVLT 548 (790)
Q Consensus 525 p~~q~~LI~~va~~~-~~~vVVVl~ 548 (790)
.++|..|.+++.... ++|+|+|++
T Consensus 31 ie~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 31 IEEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp HHHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 468999999998886 689998875
No 59
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.42 E-value=1.3e+02 Score=30.41 Aligned_cols=84 Identities=17% Similarity=0.040 Sum_probs=50.5
Q ss_pred ceEEEEEEEEecCCCCCceEEEEEE-ecCCCCCCcccccccccc--cc-ccCCCCEEEEEEEecCCCCceEEeCCCc---
Q 003876 694 LRFHVQISVTNAGDVDGSHVVMLFA-RVPKVSQGTPEKQLIGFD--RV-HTVAKGSKEISFGVDPCEQLSIANKHGR--- 766 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~G~eVvQlY~-~~p~~~~~~P~k~L~gF~--kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~--- 766 (790)
..++|+++|.|.|+-+..+| +|.= .+|...- .-..|=. +. +|+||++.+-++.|.+. ....++-...
T Consensus 38 ~~v~V~~~iyN~G~~~A~dV-~l~D~~fp~~~F----~lvsG~~s~~~~~i~pg~~vsh~~vv~p~-~~G~f~~~~a~Vt 111 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSSAAYDV-KLTDDSFPPEDF----ELVSGSLSASWERIPPGENVSHSYVVRPK-KSGYFNFTPAVVT 111 (181)
T ss_pred cEEEEEEEEEECCCCeEEEE-EEECCCCCcccc----EeccCceEEEEEEECCCCeEEEEEEEeee-eeEEEEccCEEEE
Confidence 56999999999999876664 4432 2221110 1122211 22 49999999999999984 4666665432
Q ss_pred EEecCceEEEEEecCCc
Q 003876 767 RILPLGNHVLMVGELRH 783 (790)
Q Consensus 767 ~~~~~G~y~i~vG~~s~ 783 (790)
+..+.|.=...++.++.
T Consensus 112 Y~~~~~~~~~~~a~Ss~ 128 (181)
T PF05753_consen 112 YRDSEGAKELQVAYSSP 128 (181)
T ss_pred EECCCCCceeEEEEecC
Confidence 34445544455555444
No 60
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=37.93 E-value=24 Score=40.04 Aligned_cols=57 Identities=12% Similarity=0.250 Sum_probs=34.1
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCHHHH----HHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQM----SLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~----~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
+..++||+||+..|... .+|.+|.++- ..-. ++.+++.+.+++..|+++ .++|+|+.
T Consensus 116 ~~~kdaDIVVitAG~pr---kpg~tR~dll--~~N~~I~k~i~~~I~~~a~~~~iviV-VsNPvDv~ 176 (387)
T TIGR01757 116 EVFEDADWALLIGAKPR---GPGMERADLL--DINGQIFADQGKALNAVASKNCKVLV-VGNPCNTN 176 (387)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCCCeEEEE-cCCcHHHH
Confidence 46789999999998642 3455665432 2222 344455553235555554 47999873
No 61
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=37.18 E-value=31 Score=38.16 Aligned_cols=59 Identities=20% Similarity=0.326 Sum_probs=34.3
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCHHH--HHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ--MSLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q--~~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
+..+++|+||++.|... .++.+|..+.-.... .+++.++.+.+++..++++. .+|+|+.
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~ 134 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVV-GNPANTN 134 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHHH
Confidence 45679999999998643 234455433211112 34455565653346666555 5999773
No 62
>PLN02303 urease
Probab=36.33 E-value=38 Score=41.91 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=32.0
Q ss_pred EEEEEEEecCCCCCceEEEEEEecCCCCC----Cccccccccc-------cccccCCCCEEEEEEE
Q 003876 697 HVQISVTNAGDVDGSHVVMLFARVPKVSQ----GTPEKQLIGF-------DRVHTVAKGSKEISFG 751 (790)
Q Consensus 697 ~vsv~VtNtG~~~G~eVvQlY~~~p~~~~----~~P~k~L~gF-------~kv~L~pGes~~V~~~ 751 (790)
+++++|+|||+|. +|+=-+..--.+ .--...=.|| .-|..+|||+++|++.
T Consensus 151 ~~~l~v~n~gdrp----iqvgSH~hf~e~N~aL~FdR~~a~G~rLdipaGtavRfePG~~~~V~lv 212 (837)
T PLN02303 151 AVKLKVTNTGDRP----IQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVTLV 212 (837)
T ss_pred eEEEEEeeCCCCc----eEeccccchHhcCchhhccHHHhcCccccCCCCCeEeECCCCeeEEEEE
Confidence 5899999999998 888443322111 1111111222 3467899999999985
No 63
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=36.20 E-value=2e+02 Score=28.64 Aligned_cols=86 Identities=14% Similarity=0.204 Sum_probs=46.8
Q ss_pred CeEEEEccCcccccccCCCccCCCCCcCcHHHHHHhhhccee---EeccCCCCCCCCchhHHHHHHHh--hcCCEEEEEE
Q 003876 432 SSLAIIGPLVNNISQMGGGYTGIPCSPKSLLRGLEAYVSKTH---YASGCHDVPCNSDAGFHEAVRIA--KKADFVIVVA 506 (790)
Q Consensus 432 ~kIaViGp~a~~~~~~~G~~~g~~~~~~t~~egL~~~~~~~~---y~~g~~~~~~~~~~~~~~a~~~a--~~aDvvIv~v 506 (790)
.+|.++|...... ....+-|++..+.+. +..|.- +.+..++.++.+ ..+|+++|++
T Consensus 49 ~~ifllG~~~~~~--------------~~~~~~l~~~yP~l~ivg~~~g~f-----~~~~~~~i~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 49 KRIFLLGGSEEVL--------------EKAAANLRRRYPGLRIVGYHHGYF-----DEEEEEAIINRINASGPDIVFVGL 109 (172)
T ss_pred CeEEEEeCCHHHH--------------HHHHHHHHHHCCCeEEEEecCCCC-----ChhhHHHHHHHHHHcCCCEEEEEC
Confidence 5899999653321 223445555555432 222221 223333444433 4578888887
Q ss_pred ecCCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003876 507 GLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDV 555 (790)
Q Consensus 507 G~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~va~~~~~~vVVVl~~g~P~~l 555 (790)
|. +.|+.++.+..+..+.+ |++..|+.++.
T Consensus 110 G~-----------------PkQE~~~~~~~~~l~~~--v~i~vG~~~d~ 139 (172)
T PF03808_consen 110 GA-----------------PKQERWIARHRQRLPAG--VIIGVGGAFDF 139 (172)
T ss_pred CC-----------------CHHHHHHHHHHHHCCCC--EEEEECchhhh
Confidence 74 36888888887764433 33445666654
No 64
>PLN02602 lactate dehydrogenase
Probab=36.02 E-value=29 Score=38.89 Aligned_cols=57 Identities=25% Similarity=0.420 Sum_probs=35.3
Q ss_pred HhhcCCEEEEEEecCCCCccccCCCCCCCCCHHH--HHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 495 IAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ--MSLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 495 ~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q--~~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
..++||+||++.|... .+|.+|.++-.-..+ .++++++.+. +++.++++. .+|+++-
T Consensus 102 ~~~daDiVVitAG~~~---k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivv-tNPvdv~ 160 (350)
T PLN02602 102 VTAGSDLCIVTAGARQ---IPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIV-SNPVDVL 160 (350)
T ss_pred HhCCCCEEEECCCCCC---CcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe-cCchHHH
Confidence 4689999999999653 345567554222111 2455566665 555665555 5999873
No 65
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=35.59 E-value=1e+02 Score=32.32 Aligned_cols=52 Identities=13% Similarity=0.055 Sum_probs=33.2
Q ss_pred EEEEEEEecCCCCCceEEEEEEecCCCCCCcccccccccc-ccccCCCCEEEEEEEec
Q 003876 697 HVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFD-RVHTVAKGSKEISFGVD 753 (790)
Q Consensus 697 ~vsv~VtNtG~~~G~eVvQlY~~~p~~~~~~P~k~L~gF~-kv~L~pGes~~V~~~l~ 753 (790)
.++++|+|+|+. .-.+|.-+....... ...+.-.= -..|+||+++.|.+...
T Consensus 41 ~~si~v~N~~~~--p~lvQ~wv~~~~~~~---~~~fivtPPl~rl~pg~~q~vRii~~ 93 (230)
T PRK09918 41 EGSINVKNTDSN--PILLYTTLVDLPEDK---SKLLLVTPPVARVEPGQSQQVRFILK 93 (230)
T ss_pred eEEEEEEcCCCC--cEEEEEEEecCCCCC---CCCEEEcCCeEEECCCCceEEEEEEC
Confidence 478899999975 478898887543221 11111111 23589999999988643
No 66
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=35.42 E-value=33 Score=37.77 Aligned_cols=57 Identities=23% Similarity=0.338 Sum_probs=34.7
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCHH--HHHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQ--QMSLVTSVARTSKRPVILVLTGGGPLDV 555 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~--q~~LI~~va~~~~~~vVVVl~~g~P~~l 555 (790)
+..++||+||++.|... .+|.+|.++---.. -.+.++++.+. ++..++++. .+|+|+
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivv-tNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILII-SNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEc-cCchhh
Confidence 46789999999999753 24556654321111 13455566666 555655544 799987
No 67
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=35.09 E-value=1.4e+02 Score=32.67 Aligned_cols=108 Identities=23% Similarity=0.233 Sum_probs=58.8
Q ss_pred CCcccCCCCCCCeEEEEccCcccccccCCCccCCCCCcCcHHHHHHhhhcce--eEeccCCCCC-CCCchhHHHHHHHhh
Q 003876 421 KKFLPLNKNAVSSLAIIGPLVNNISQMGGGYTGIPCSPKSLLRGLEAYVSKT--HYASGCHDVP-CNSDAGFHEAVRIAK 497 (790)
Q Consensus 421 ~~~LPL~~~~~~kIaViGp~a~~~~~~~G~~~g~~~~~~t~~egL~~~~~~~--~y~~g~~~~~-~~~~~~~~~a~~~a~ 497 (790)
..-||.-+ ++|+||..-.... +..++..++.+.+.+ .+.+ + .+. ......+.+|.+.+.
T Consensus 7 k~~lP~~p---~~I~vITs~~gAa-------------~~D~~~~~~~r~~~~~~~~~p-~-~vQG~~A~~~I~~al~~~~ 68 (319)
T PF02601_consen 7 KKPLPKFP---KRIAVITSPTGAA-------------IQDFLRTLKRRNPIVEIILYP-A-SVQGEGAAASIVSALRKAN 68 (319)
T ss_pred CCCCCCCC---CEEEEEeCCchHH-------------HHHHHHHHHHhCCCcEEEEEe-c-cccccchHHHHHHHHHHHH
Confidence 34555544 6999997543221 134555566655422 1111 1 111 012344556665553
Q ss_pred ------cCCEEEEEEecCCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCccccccc
Q 003876 498 ------KADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVSFA 558 (790)
Q Consensus 498 ------~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~va~~~~~~vVVVl~~g~P~~l~~~ 558 (790)
..|++|++=|. +...+|. +=+..++++++++. ..|||.- .|.=.|.+-.
T Consensus 69 ~~~~~~~~Dviii~RGG--------Gs~eDL~-~FN~e~varai~~~-~~Pvisa--IGHe~D~ti~ 123 (319)
T PF02601_consen 69 EMGQADDFDVIIIIRGG--------GSIEDLW-AFNDEEVARAIAAS-PIPVISA--IGHETDFTIA 123 (319)
T ss_pred hccccccccEEEEecCC--------CChHHhc-ccChHHHHHHHHhC-CCCEEEe--cCCCCCchHH
Confidence 46888887652 3333432 34678899999887 7887653 3666666533
No 68
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=34.42 E-value=29 Score=37.93 Aligned_cols=58 Identities=24% Similarity=0.348 Sum_probs=35.3
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCH--HHHHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPG--QQMSLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~--~q~~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
+..++||+||++.|... .+|.+|.++---. --.++++++.+. +++.++++ .++|+++-
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~viv-vsNP~d~~ 119 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLV-ATNPVDIL 119 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEE-eCCHHHHH
Confidence 46689999999998643 2455675432111 113455666666 55666554 47999763
No 69
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=34.42 E-value=43 Score=36.77 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=32.5
Q ss_pred HhhcCCEEEEEEecCCCCccccCCCCCCCCCH--HHHHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 495 IAKKADFVIVVAGLDLTQETEDRDRVSLLLPG--QQMSLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 495 ~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~--~q~~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
..++||+||+++|... .++.+|.++-.-. --.+.++++.+. ++..+|++. ++|+++.
T Consensus 69 ~l~~aDiViitag~p~---~~~~~r~dl~~~n~~i~~~~~~~i~~~-~~~~~viv~-~npvd~~ 127 (309)
T cd05294 69 DVAGSDIVIITAGVPR---KEGMSRLDLAKKNAKIVKKYAKQIAEF-APDTKILVV-TNPVDVM 127 (309)
T ss_pred HhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe-CCchHHH
Confidence 4789999999999753 3444554331000 112344555555 345555444 6999763
No 70
>PRK05086 malate dehydrogenase; Provisional
Probab=31.98 E-value=43 Score=36.84 Aligned_cols=56 Identities=25% Similarity=0.285 Sum_probs=34.4
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCH---HHHHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPG---QQMSLVTSVARTSKRPVILVLTGGGPLDV 555 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~---~q~~LI~~va~~~~~~vVVVl~~g~P~~l 555 (790)
+..+++|+||+++|... .++.+|.++- .. --.++++++.+. +.+.+|++ ..+|+|+
T Consensus 65 ~~l~~~DiVIitaG~~~---~~~~~R~dll-~~N~~i~~~ii~~i~~~-~~~~iviv-vsNP~D~ 123 (312)
T PRK05086 65 PALEGADVVLISAGVAR---KPGMDRSDLF-NVNAGIVKNLVEKVAKT-CPKACIGI-ITNPVNT 123 (312)
T ss_pred HHcCCCCEEEEcCCCCC---CCCCCHHHHH-HHHHHHHHHHHHHHHHh-CCCeEEEE-ccCchHH
Confidence 45578999999999753 2334555431 22 234667777776 44455444 4799964
No 71
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=31.88 E-value=2.1e+02 Score=28.34 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=27.3
Q ss_pred hhcCCEEEEEEecCCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003876 496 AKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDV 555 (790)
Q Consensus 496 a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~va~~~~~~vVVVl~~g~P~~l 555 (790)
...+|+|+|++|. +.|+.++.+..+..+ .-|++..|+.+|.
T Consensus 97 ~~~pdiv~vglG~-----------------PkQE~~~~~~~~~l~--~~v~~~vG~~~d~ 137 (171)
T cd06533 97 ASGADILFVGLGA-----------------PKQELWIARHKDRLP--VPVAIGVGGSFDF 137 (171)
T ss_pred HcCCCEEEEECCC-----------------CHHHHHHHHHHHHCC--CCEEEEeceeeEe
Confidence 3568999998884 368889999887732 3333444666654
No 72
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=31.68 E-value=1.5e+02 Score=31.59 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=52.3
Q ss_pred HHHHHHHhhcCCEEEEEEecCCCCc---------------cccCCCCC-----CCCCHHH---HHHHHHHHHhCCCCEEE
Q 003876 489 FHEAVRIAKKADFVIVVAGLDLTQE---------------TEDRDRVS-----LLLPGQQ---MSLVTSVARTSKRPVIL 545 (790)
Q Consensus 489 ~~~a~~~a~~aDvvIv~vG~~~~~e---------------~Eg~Dr~~-----l~Lp~~q---~~LI~~va~~~~~~vVV 545 (790)
+++..+..++||++|+.+|....+. +..+|+.- +...+.. .++++.+.+. | |-+=
T Consensus 92 l~~~~~~l~~ad~~iiTLGtaevw~~~~~g~vv~nc~k~p~~~F~~~~~~f~~ls~~ei~~~l~~~~~~l~~~-n-P~~k 169 (251)
T PF08885_consen 92 LEEVREALEEADVFIITLGTAEVWRDRETGRVVANCHKVPAGQFDPERYEFRNLSVEEILEDLEAIIDLLRSI-N-PDIK 169 (251)
T ss_pred HHHHHHHHHhCCEEEEeCCcHHHheeCCCCEEEecCCCccccccchhhhhhccCCHHHHHHHHHHHHHHHHhh-C-CCce
Confidence 4566778899999999999754221 11123322 3333322 2345566665 4 3333
Q ss_pred EEeCCCcccccccccccCccEEEEccCCChhHHHHHHHHHhCC
Q 003876 546 VLTGGGPLDVSFAEADSQISSILWIGYPGEAGAKALAEIIFGD 588 (790)
Q Consensus 546 Vl~~g~P~~l~~~~~~~~v~AiL~a~~pGqe~g~AiAdVL~G~ 588 (790)
|+.+-+|+-+..-. ... -++.+-.-......++++-|...
T Consensus 170 iilTVSPVrl~~T~--~~~-d~~~an~~SKs~Lr~a~~~l~~~ 209 (251)
T PF08885_consen 170 IILTVSPVRLIATF--RDR-DGLVANQYSKSTLRAAAHELVRA 209 (251)
T ss_pred EEEEeccchhhccc--ccc-cchhhhhhhHHHHHHHHHHHHhc
Confidence 44456888553211 112 23444555667778888888773
No 73
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=31.40 E-value=40 Score=37.11 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=34.2
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCHH--HHHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQ--QMSLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~--q~~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
+..++||+||+..|... .+|.+|.++-.-.. =.++++++.+. +.+.++++ .++|.++-
T Consensus 69 ~~~~~adivIitag~~~---k~g~~R~dll~~N~~i~~~i~~~i~~~-~~~~~viv-vsNP~d~~ 128 (315)
T PRK00066 69 SDCKDADLVVITAGAPQ---KPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLV-ASNPVDIL 128 (315)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEE-ccCcHHHH
Confidence 34689999999998653 34556654321111 12445556665 44555544 46999863
No 74
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=31.29 E-value=31 Score=30.69 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=16.9
Q ss_pred ccccccccccccccCCCCEEEEEEEecC
Q 003876 727 TPEKQLIGFDRVHTVAKGSKEISFGVDP 754 (790)
Q Consensus 727 ~P~k~L~gF~kv~L~pGes~~V~~~l~~ 754 (790)
.|.--|+ .+|.|+|||+++|.|-+-.
T Consensus 59 Dpc~al~--~~v~L~PGe~~~v~f~lG~ 84 (90)
T PF06205_consen 59 DPCAALQ--VRVTLEPGEEKEVVFLLGA 84 (90)
T ss_dssp -EEEEEE--EEEEE-TT-EEEEEEEEEE
T ss_pred CeEEEEE--EEEEECCCCEEEEEEEEEE
Confidence 4544444 3788999999999998754
No 75
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=31.11 E-value=41 Score=36.81 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=32.1
Q ss_pred hhcCCEEEEEEecCCCCccccCCCCCCCCCHHHH----HHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 496 AKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQM----SLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 496 a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~----~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
+++||+||+++|.... +|.+|.++ -.... +.++++.+. +++.++++. .+|+++-
T Consensus 67 ~~~aDiVIitag~p~~---~~~sR~~l--~~~N~~iv~~i~~~I~~~-~p~~~iIv~-tNP~di~ 124 (305)
T TIGR01763 67 TANSDIVVITAGLPRK---PGMSREDL--LSMNAGIVREVTGRIMEH-SPNPIIVVV-SNPLDAM 124 (305)
T ss_pred hCCCCEEEEcCCCCCC---cCCCHHHH--HHHHHHHHHHHHHHHHHH-CCCeEEEEe-cCcHHHH
Confidence 5789999999997532 33455432 22233 344556665 445554444 6999873
No 76
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=29.82 E-value=42 Score=36.65 Aligned_cols=55 Identities=27% Similarity=0.421 Sum_probs=33.4
Q ss_pred HhhcCCEEEEEEecCCCCccccCCCCCCCCCHHH----HHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 495 IAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ----MSLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 495 ~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
.+++||++|++.|... .+|.+|.++- ..- .++.+++.+. ++..+|++ .++|+++-
T Consensus 65 ~l~~aDIVIitag~~~---~~g~~R~dll--~~N~~i~~~~~~~i~~~-~~~~~viv-vsNP~d~~ 123 (306)
T cd05291 65 DCKDADIVVITAGAPQ---KPGETRLDLL--EKNAKIMKSIVPKIKAS-GFDGIFLV-ASNPVDVI 123 (306)
T ss_pred HhCCCCEEEEccCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHh-CCCeEEEE-ecChHHHH
Confidence 3579999999998653 3455665432 122 2344555555 44555544 46999873
No 77
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=29.63 E-value=4.4e+02 Score=30.54 Aligned_cols=46 Identities=11% Similarity=0.016 Sum_probs=32.0
Q ss_pred HHHhCCCceeeeeccccCC-----cccccCHHHHHH-HHHHhCCCcEEEccchH
Q 003876 282 CIEQGKASCIMCSYNQVNG-----VPACLRGDLFQK-ARNEWGFKGYITSDCDA 329 (790)
Q Consensus 282 ~i~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~-LR~e~gF~G~VvSD~~~ 329 (790)
.|+++.+ ..|.+.+.+.| ..++.++.+++. |..=+.+ |.-..+-++
T Consensus 50 ~iD~~l~-~~f~~P~S~TGEDvvEi~~HGg~~v~~~il~~l~~~-g~R~A~pGE 101 (442)
T TIGR00450 50 CKDDELL-FKFVAPNSYTGEDVIEIQCHGSMLIVQEILQLCLKS-GARLAQPGE 101 (442)
T ss_pred EeeeEEE-EEEcCCCCcccccEEEEECCCCHHHHHHHHHHHHHc-CCeEcCCch
Confidence 3455555 88999999988 478999999988 6644433 666665553
No 78
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=29.48 E-value=1.9e+02 Score=27.81 Aligned_cols=61 Identities=13% Similarity=-0.029 Sum_probs=39.5
Q ss_pred ceEEEEEEEEecCCCCCce-EEEEEEecCCCC-----CCccccccccc--cccccCCCCEEEEEEEecC
Q 003876 694 LRFHVQISVTNAGDVDGSH-VVMLFARVPKVS-----QGTPEKQLIGF--DRVHTVAKGSKEISFGVDP 754 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~G~e-VvQlY~~~p~~~-----~~~P~k~L~gF--~kv~L~pGes~~V~~~l~~ 754 (790)
+.+.|+.+++|+++.+=.- .+++-+.+.... .-.|..-|..- .+..|+||++.++++.+..
T Consensus 68 ~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 68 GVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred CEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 5789999999999876322 344555554442 12454334433 2445999999999998873
No 79
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=29.11 E-value=69 Score=25.45 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=17.3
Q ss_pred ceEEEEEEEEecCCCCCceEEEE
Q 003876 694 LRFHVQISVTNAGDVDGSHVVML 716 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~G~eVvQl 716 (790)
+.++.+++|+|+|...... |++
T Consensus 12 d~v~Yti~v~N~g~~~a~~-v~v 33 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATN-VVV 33 (53)
T ss_pred CEEEEEEEEEECCCCceEe-EEE
Confidence 6899999999999977543 444
No 80
>PLN00106 malate dehydrogenase
Probab=28.48 E-value=51 Score=36.49 Aligned_cols=88 Identities=17% Similarity=0.077 Sum_probs=49.3
Q ss_pred HHHhhcCCEEEEEEecCCCCccccCCCCCCCCCHHH---HHHHHHHHHhCCCCEEEEEeCCCccc-----ccccc----c
Q 003876 493 VRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ---MSLVTSVARTSKRPVILVLTGGGPLD-----VSFAE----A 560 (790)
Q Consensus 493 ~~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q---~~LI~~va~~~~~~vVVVl~~g~P~~-----l~~~~----~ 560 (790)
.++.+++|+||+..|... .+|.+|.++ |+.+- .++++++.+. +++.||++. .+|+| +.+.. .
T Consensus 81 ~~~l~~aDiVVitAG~~~---~~g~~R~dl-l~~N~~i~~~i~~~i~~~-~p~aivivv-SNPvD~~~~i~t~~~~~~s~ 154 (323)
T PLN00106 81 GDALKGADLVIIPAGVPR---KPGMTRDDL-FNINAGIVKTLCEAVAKH-CPNALVNII-SNPVNSTVPIAAEVLKKAGV 154 (323)
T ss_pred HHHcCCCCEEEEeCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHH-CCCeEEEEe-CCCccccHHHHHHHHHHcCC
Confidence 356789999999998643 234556543 22221 3566667776 555555544 69998 44211 1
Q ss_pred ccCccEEEEccCCChhHHHHHHHHHh
Q 003876 561 DSQISSILWIGYPGEAGAKALAEIIF 586 (790)
Q Consensus 561 ~~~v~AiL~a~~pGqe~g~AiAdVL~ 586 (790)
.|.-+-+=.+...+.-....+|+.+-
T Consensus 155 ~p~~~viG~~~LDs~Rl~~~lA~~lg 180 (323)
T PLN00106 155 YDPKKLFGVTTLDVVRANTFVAEKKG 180 (323)
T ss_pred CCcceEEEEecchHHHHHHHHHHHhC
Confidence 12223332334555556666777654
No 81
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=28.10 E-value=66 Score=27.17 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=16.6
Q ss_pred ceEEEEEEEEecCCCCCce
Q 003876 694 LRFHVQISVTNAGDVDGSH 712 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~G~e 712 (790)
+.++.+++|+|+|......
T Consensus 41 d~v~ytitvtN~G~~~a~n 59 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPATN 59 (76)
T ss_pred CEEEEEEEEEECCCCeeEe
Confidence 6899999999999988555
No 82
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=27.84 E-value=41 Score=37.00 Aligned_cols=56 Identities=21% Similarity=0.415 Sum_probs=33.9
Q ss_pred HhhcCCEEEEEEecCCCCccccCCCCCCCCCH--HHHHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003876 495 IAKKADFVIVVAGLDLTQETEDRDRVSLLLPG--QQMSLVTSVARTSKRPVILVLTGGGPLDV 555 (790)
Q Consensus 495 ~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~--~q~~LI~~va~~~~~~vVVVl~~g~P~~l 555 (790)
..++||+||++.|.... +|.+|.++---. --.++++++.+. +++.++++. .+|+++
T Consensus 68 ~~~~adivvitaG~~~k---~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivv-sNP~d~ 125 (312)
T cd05293 68 VTANSKVVIVTAGARQN---EGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVV-SNPVDI 125 (312)
T ss_pred HhCCCCEEEECCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEc-cChHHH
Confidence 46899999999997532 455665431100 123455666666 455665544 699986
No 83
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=27.08 E-value=1.2e+02 Score=33.99 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=32.9
Q ss_pred ceEEEEEEEEecCCCCCceEEEE------EEecCCC------CCCccccccc--ccc---ccccCCCCEEEEEEEec
Q 003876 694 LRFHVQISVTNAGDVDGSHVVML------FARVPKV------SQGTPEKQLI--GFD---RVHTVAKGSKEISFGVD 753 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~G~eVvQl------Y~~~p~~------~~~~P~k~L~--gF~---kv~L~pGes~~V~~~l~ 753 (790)
..++++++|||.|+-+ |.| =+++.++ ....|. +|. |-. ..-++|||+++|+++..
T Consensus 282 R~l~~~~~VTN~g~~~----vrlgEF~TA~vRFlN~~~v~~~~~~yP~-~lla~GL~v~d~~pI~PGETr~v~v~aq 353 (399)
T TIGR03079 282 RALRVTMEITNNGDQV----ISIGEFTTAGIRFMNANGVRVLDPDYPR-ELLAEGLEVDDQSAIAPGETVEVKMEAK 353 (399)
T ss_pred cEEEEEEEEEcCCCCc----eEEEeEeecceEeeCcccccccCCCChH-HHhhccceeCCCCCcCCCcceEEEEEEe
Confidence 5799999999987643 433 1222222 112333 332 222 22499999999999875
No 84
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=26.80 E-value=59 Score=33.97 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=39.7
Q ss_pred HHHHHHhCCCceeeeeccccCCccc-ccCHHHHHH-HHHHhCCCcEEEccchHH
Q 003876 279 FRSCIEQGKASCIMCSYNQVNGVPA-CLRGDLFQK-ARNEWGFKGYITSDCDAV 330 (790)
Q Consensus 279 F~~~i~~g~~~~vM~sy~~vng~pa-~~s~~ll~~-LR~e~gF~G~VvSD~~~~ 330 (790)
|+.|++..+. +||++||...|.|. +.....+|. |.+-.++-|+.+=|-.-+
T Consensus 158 ~k~Al~~nAa-avIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiIi 210 (224)
T COG2003 158 FKEALKYNAA-AVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHIII 210 (224)
T ss_pred HHHHHHhcch-hhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEEe
Confidence 7889998877 99999999988543 334445667 999999999888776543
No 85
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=26.78 E-value=1.4e+02 Score=31.27 Aligned_cols=55 Identities=9% Similarity=0.111 Sum_probs=34.3
Q ss_pred EEEEEEEecCCCCCceEEEEEEecCCCCCCcccccccccccc-ccCCCCEEEEEEEec
Q 003876 697 HVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRV-HTVAKGSKEISFGVD 753 (790)
Q Consensus 697 ~vsv~VtNtG~~~G~eVvQlY~~~p~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~ 753 (790)
.++++|+|+|+. .-.+|..+.........+...+.-.=-+ .|+||+++.|.|...
T Consensus 39 ~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~ 94 (227)
T PRK15299 39 DASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRT 94 (227)
T ss_pred EEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEEC
Confidence 588999999975 6899998875321110111112222223 489999999987654
No 86
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=26.69 E-value=1.4e+02 Score=28.27 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=14.6
Q ss_pred HHHHHHhhcCCEEEEEEe
Q 003876 490 HEAVRIAKKADFVIVVAG 507 (790)
Q Consensus 490 ~~a~~~a~~aDvvIv~vG 507 (790)
.++.+.++.+|++|+++-
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 456778899999999884
No 87
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=26.38 E-value=54 Score=36.01 Aligned_cols=56 Identities=18% Similarity=0.474 Sum_probs=33.6
Q ss_pred HHhhcCCEEEEEEecCCCCccccCC--CCCCCCCHHH----HHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 494 RIAKKADFVIVVAGLDLTQETEDRD--RVSLLLPGQQ----MSLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 494 ~~a~~aDvvIv~vG~~~~~e~Eg~D--r~~l~Lp~~q----~~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
+..++||+||++.|... . +|.+ |.++ =..- .++++++.+. +++.++++. .+|+|+-
T Consensus 64 ~~~~~aDivvitaG~~~-k--pg~tr~R~dl--l~~N~~I~~~i~~~i~~~-~p~~i~ivv-sNPvDv~ 125 (307)
T cd05290 64 DDCADADIIVITAGPSI-D--PGNTDDRLDL--AQTNAKIIREIMGNITKV-TKEAVIILI-TNPLDIA 125 (307)
T ss_pred HHhCCCCEEEECCCCCC-C--CCCCchHHHH--HHHHHHHHHHHHHHHHHh-CCCeEEEEe-cCcHHHH
Confidence 46789999999998643 2 3334 3332 2222 2445556666 455665544 6999873
No 88
>PTZ00117 malate dehydrogenase; Provisional
Probab=26.29 E-value=51 Score=36.37 Aligned_cols=57 Identities=26% Similarity=0.352 Sum_probs=35.1
Q ss_pred HhhcCCEEEEEEecCCCCccccCCCCCCCCCHH--HHHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 495 IAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQ--QMSLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 495 ~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~--q~~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
..++||+||+++|.. ..+|.+|.++--+.. -.++.+++.+. +++.++++. .+|+++.
T Consensus 70 ~l~~ADiVVitag~~---~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivv-sNP~di~ 128 (319)
T PTZ00117 70 DIKDSDVVVITAGVQ---RKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICV-TNPLDCM 128 (319)
T ss_pred HhCCCCEEEECCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe-cChHHHH
Confidence 568999999999754 234555654322222 23566667676 456655544 6999774
No 89
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=26.21 E-value=2.8e+02 Score=24.24 Aligned_cols=64 Identities=14% Similarity=0.096 Sum_probs=40.7
Q ss_pred ceEEEEEEEEecCCCCCceEEEEEEecCCCCCCccccccccccccccCCCCEEEEEEEecCCCCceEEeC
Q 003876 694 LRFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANK 763 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~G~eVvQlY~~~p~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~ 763 (790)
..++|.+++.|.+.....-.+++.+.......... .-..+.+..++...+.++++. +....|+.
T Consensus 18 ~~v~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i-~~~~lW~p 81 (110)
T PF00703_consen 18 AKVSVEVEVRNESNKPLDVTVRVRLFDPEGKKVVT-----QSPVVSLSAPGQARITLTIEI-PNPKLWSP 81 (110)
T ss_dssp EEEEEEEEEEEESSSSCEEEEEEEEEETTSEEEEE-----EEEEEEECCCCEEEEEEEEEE-ESS-BBES
T ss_pred EEEEEEEEEEeCCCCcEEEEEEEEEECCCCCEEEE-----eeeEEEecCCceeEEEEEEEc-CCCCCcCC
Confidence 45777788899999998888988888775543211 113334666666666444444 24678877
No 90
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=26.00 E-value=30 Score=31.92 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=15.0
Q ss_pred ccccCCccCCCCceeccCC
Q 003876 635 VYGFGHGLSYTNYSYKFLS 653 (790)
Q Consensus 635 ~ypFG~GLSYTtF~ys~l~ 653 (790)
.|..-||+.||+|....-.
T Consensus 31 ~y~~~~g~g~~~f~~~~~g 49 (110)
T PF06165_consen 31 EYEVRHGFGYTRFEREDGG 49 (110)
T ss_dssp EEEEEEESSEEEEEEEETT
T ss_pred cEEEEECCCeEEEEEEeCC
Confidence 4778899999999866433
No 91
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=25.62 E-value=2.6e+02 Score=28.15 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=24.3
Q ss_pred hcCCEEEEEEecCCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003876 497 KKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDV 555 (790)
Q Consensus 497 ~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~va~~~~~~vVVVl~~g~P~~l 555 (790)
..+|+++|.+|. +.|+.++.+.... ....| ++..|+-+|.
T Consensus 99 s~~dil~VglG~-----------------PkQE~~~~~~~~~-~~~~v-~~gvGg~fd~ 138 (177)
T TIGR00696 99 SGAGIVFVGLGC-----------------PKQEIWMRNHRHL-KPDAV-MIGVGGSFDV 138 (177)
T ss_pred cCCCEEEEEcCC-----------------cHhHHHHHHhHHh-CCCcE-EEEeceeeee
Confidence 567888888874 2677888877555 22223 3344655544
No 92
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=24.91 E-value=2.1e+02 Score=33.06 Aligned_cols=55 Identities=15% Similarity=0.277 Sum_probs=38.6
Q ss_pred HHhh-cCCEEEEEEecCCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCccc
Q 003876 494 RIAK-KADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLD 554 (790)
Q Consensus 494 ~~a~-~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~va~~~~~~vVVVl~~g~P~~ 554 (790)
+.+. .+|+.||++...+ . -+..|.+ .-..+.++|+++.+. ++|.|+|+++-.|+.
T Consensus 139 kVI~dhstIgivVtTDgs-i--~dI~Re~--y~~aEe~~i~eLk~~-~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 139 KVIQEHSTIGVVVTTDGT-I--TDIPRED--YVEAEERVIEELKEL-NKPFIILLNSTHPYH 194 (492)
T ss_pred HHHHhcCcEEEEEEcCCC-c--ccccccc--chHHHHHHHHHHHhc-CCCEEEEEECcCCCC
Confidence 3445 8999999874211 0 0123433 345778899999888 899999999988884
No 93
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=24.77 E-value=2.5e+02 Score=27.79 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=32.3
Q ss_pred hHHHHHHHhhcCCEEEEEEecCCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEe
Q 003876 488 GFHEAVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLT 548 (790)
Q Consensus 488 ~~~~a~~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~va~~~~~~vVVVl~ 548 (790)
-..+....++.+|.+|+++-.. +| +.....+.++.+... +.|+|||++
T Consensus 83 f~~~~~~~~~~~D~ailvVda~-----~g-------~~~~~~~~l~~~~~~-~~p~ivvlN 130 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDAN-----DG-------IQPQTEEHLKILREL-GIPIIVVLN 130 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETT-----TB-------STHHHHHHHHHHHHT-T-SEEEEEE
T ss_pred eeecccceecccccceeeeecc-----cc-------ccccccccccccccc-ccceEEeee
Confidence 3556667788999999999643 12 233445667776666 788888887
No 94
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=24.30 E-value=8.9e+02 Score=27.24 Aligned_cols=80 Identities=21% Similarity=0.229 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhhhhhccCCCcccCCCCCCCeEEEEc-cCcccccccCCCccCCCCCcCcHHHHHHhhhcceeEeccCCC
Q 003876 402 HKKLALDAARQGIVLLKNDKKFLPLNKNAVSSLAIIG-PLVNNISQMGGGYTGIPCSPKSLLRGLEAYVSKTHYASGCHD 480 (790)
Q Consensus 402 h~~lA~e~A~esiVLLKN~~~~LPL~~~~~~kIaViG-p~a~~~~~~~G~~~g~~~~~~t~~egL~~~~~~~~y~~g~~~ 480 (790)
-+.+-+.+-.+|+- ++.+.+.-++.+. .++|++|| ...- | .++...|++....+... +..
T Consensus 71 ~~~i~~~i~~~s~~-~q~~~~~~~~~~~-~~~I~IiGG~Glm------G---------~slA~~l~~~G~~V~~~-d~~- 131 (374)
T PRK11199 71 IEDVLRRVMRESYS-SENDKGFKTLNPD-LRPVVIVGGKGQL------G---------RLFAKMLTLSGYQVRIL-EQD- 131 (374)
T ss_pred HHHHHHHHHHHHHH-HhHHhcccccCcc-cceEEEEcCCChh------h---------HHHHHHHHHCCCeEEEe-CCC-
Confidence 45677777777764 4455566666653 47999998 4321 1 23455565543222111 110
Q ss_pred CCCCCchhHHHHHHHhhcCCEEEEEEe
Q 003876 481 VPCNSDAGFHEAVRIAKKADFVIVVAG 507 (790)
Q Consensus 481 ~~~~~~~~~~~a~~~a~~aDvvIv~vG 507 (790)
......++++++|+||+++-
T Consensus 132 -------~~~~~~~~~~~aDlVilavP 151 (374)
T PRK11199 132 -------DWDRAEDILADAGMVIVSVP 151 (374)
T ss_pred -------cchhHHHHHhcCCEEEEeCc
Confidence 11233456778999999883
No 95
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=24.08 E-value=4.7e+02 Score=22.59 Aligned_cols=75 Identities=9% Similarity=0.082 Sum_probs=42.2
Q ss_pred eEEEEEEEEec------CCCCCceEEEEEEecCCCCCCcccccccccccc-ccCCCCEEEEEEEecCCCCceEEeCCCcE
Q 003876 695 RFHVQISVTNA------GDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRV-HTVAKGSKEISFGVDPCEQLSIANKHGRR 767 (790)
Q Consensus 695 ~v~vsv~VtNt------G~~~G~eVvQlY~~~p~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~ 767 (790)
.+++++.+-+. ....-..-+++|+..... +. .+.-+.+- .|.|||+..|.|.+.. .+ ..+..+++
T Consensus 5 ~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~----~~-~i~~l~~~~~i~~g~~~~v~l~l~~--pv-~~~~~~rf 76 (90)
T cd03707 5 KFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDV----TG-SITLPEGTEMVMPGDNVKMTVELIH--PI-ALEKGLRF 76 (90)
T ss_pred EEEEEEEEEcccccCCCCcccCCceeEEEeccCeE----EE-EEEccCcccccCCCCEEEEEEEECC--cE-EEecCCEE
Confidence 46666666664 234444556677665432 11 22223344 3999999999999984 35 33444566
Q ss_pred EecCceEEEE
Q 003876 768 ILPLGNHVLM 777 (790)
Q Consensus 768 ~~~~G~y~i~ 777 (790)
++-.+.-+|-
T Consensus 77 ~lR~~~~tig 86 (90)
T cd03707 77 AIREGGRTVG 86 (90)
T ss_pred EEecCCcEEE
Confidence 6633333443
No 96
>PHA00691 hypothetical protein
Probab=23.81 E-value=75 Score=25.73 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=17.6
Q ss_pred CCC-cEEec-CceEEEEEecCCceE
Q 003876 763 KHG-RRILP-LGNHVLMVGELRHSL 785 (790)
Q Consensus 763 ~~~-~~~~~-~G~y~i~vG~~s~~~ 785 (790)
++| .|+++ +|.|+++|....|+-
T Consensus 11 ENGr~WVL~K~~~Y~V~vSG~THST 35 (68)
T PHA00691 11 ENGRVWVLKKSDSYTVFVSGVTHST 35 (68)
T ss_pred cCCeEEEEEeCCcEEEEEecccccc
Confidence 455 49998 899999998766643
No 97
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=23.53 E-value=1.2e+02 Score=27.30 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=32.2
Q ss_pred ceEEEEEEEEecCCCC------------CceEEEEEEecCCCCCCccccccccccc-cccCCCCEEEEEEEecC
Q 003876 694 LRFHVQISVTNAGDVD------------GSHVVMLFARVPKVSQGTPEKQLIGFDR-VHTVAKGSKEISFGVDP 754 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~------------G~eVvQlY~~~p~~~~~~P~k~L~gF~k-v~L~pGes~~V~~~l~~ 754 (790)
..+...|+|+|+|+.+ |.++.++.=...... .. ...+++-.= -.|+||++.++.|....
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~-g~-~~~v~~~~wn~~i~~G~s~~~Gf~~~~ 84 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQS-GN-TVTVTNPSWNGTIAPGGSVTFGFQASG 84 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEE-TT-EEEEEESSTCSEEEESEEEEEEEEEEE
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEec-CC-EEEEEcCCcCcccCCCCeEEEEEEEeC
Confidence 5688999999999865 333333331110000 01 112332221 24888988888887764
No 98
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=22.40 E-value=1.9e+02 Score=31.58 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=36.9
Q ss_pred eEEEEEEEEecCCCCCceEEEEEEecCCCCC-------Cccc----ccccccc--ccccCCCCEEEEEEEecC
Q 003876 695 RFHVQISVTNAGDVDGSHVVMLFARVPKVSQ-------GTPE----KQLIGFD--RVHTVAKGSKEISFGVDP 754 (790)
Q Consensus 695 ~v~vsv~VtNtG~~~G~eVvQlY~~~p~~~~-------~~P~----k~L~gF~--kv~L~pGes~~V~~~l~~ 754 (790)
..+.+++|+|..+.+=+ |+|.=+.|.+.. ..|. ..-.|.- ++.|+|||+++++|....
T Consensus 243 ~~~~~itv~N~~~~~v~--v~v~d~iPvs~~~~I~V~~~~~~~~~~~~~~g~~~W~~~l~~g~~~~l~~~y~v 313 (317)
T PF13598_consen 243 TYEYTITVRNNKDEPVT--VTVEDQIPVSEDEDIKVELLEPPEPNEDEKDGILEWKVTLPPGESRTLEFSYEV 313 (317)
T ss_pred EEEEEEEEECCCCCCEE--EEEEeCCCCCCCceEEEEEcCCCCCcccCCCCEEEEEEEECCCCEEEEEEEEEE
Confidence 46789999999865533 666666665531 1111 2233333 456999999999887764
No 99
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=22.38 E-value=2.1e+02 Score=30.13 Aligned_cols=53 Identities=9% Similarity=0.057 Sum_probs=32.8
Q ss_pred EEEEEEEecCCCCCceEEEEEEecCCCCCCcccccccccccc-ccCCCCEEEEEEEec
Q 003876 697 HVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRV-HTVAKGSKEISFGVD 753 (790)
Q Consensus 697 ~vsv~VtNtG~~~G~eVvQlY~~~p~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~ 753 (790)
.++++|+|+++- .-..||..+.+.+.....| +.-.--+ .|+||+.+.+.|...
T Consensus 44 ~~sv~i~N~~~~-~p~LvQsWv~~~~~~~~~p---FivtPPlfrl~~~~~~~lRI~~~ 97 (228)
T PRK15188 44 QTSLPIINSSAS-NVFLIQSWVANADGSRSTD---FIITPPLFVIQPKKENILRIMYV 97 (228)
T ss_pred eEEEEEEeCCCC-ccEEEEEEEecCCCCccCC---EEEcCCeEEECCCCceEEEEEEC
Confidence 588999999752 2467999997654321111 0111112 489999999988665
No 100
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=22.26 E-value=1e+02 Score=28.18 Aligned_cols=61 Identities=11% Similarity=-0.065 Sum_probs=28.6
Q ss_pred ceEEEEEEEEecCCCCCce-EEEEEEecCCCCCCccccccc----cccccccCCCCEEEEEEEecC
Q 003876 694 LRFHVQISVTNAGDVDGSH-VVMLFARVPKVSQGTPEKQLI----GFDRVHTVAKGSKEISFGVDP 754 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~G~e-VvQlY~~~p~~~~~~P~k~L~----gF~kv~L~pGes~~V~~~l~~ 754 (790)
.-+.|+|+|+|+|+-+-.- ..+..+.+.....-.+....- .+--..|+||++.+..+.+..
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 4689999999988754321 113344444432222221111 134457999999887765544
No 101
>PTZ00325 malate dehydrogenase; Provisional
Probab=22.02 E-value=76 Score=35.11 Aligned_cols=58 Identities=22% Similarity=0.322 Sum_probs=36.0
Q ss_pred HHHhhcCCEEEEEEecCCCCccccCCCCCCCCCH---HHHHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003876 493 VRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPG---QQMSLVTSVARTSKRPVILVLTGGGPLDVS 556 (790)
Q Consensus 493 ~~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~---~q~~LI~~va~~~~~~vVVVl~~g~P~~l~ 556 (790)
.+..+++|+||+++|... .++.+|.++ |.. .-.++++++.+. +.+-||++ +.+|++.-
T Consensus 71 ~~~l~gaDvVVitaG~~~---~~~~tR~dl-l~~N~~i~~~i~~~i~~~-~~~~iviv-~SNPvdv~ 131 (321)
T PTZ00325 71 EKALRGADLVLICAGVPR---KPGMTRDDL-FNTNAPIVRDLVAAVASS-APKAIVGI-VSNPVNST 131 (321)
T ss_pred HHHhCCCCEEEECCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHH-CCCeEEEE-ecCcHHHH
Confidence 356789999999999643 234455443 222 234667777776 54455444 46898873
No 102
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=21.96 E-value=3.9e+02 Score=26.66 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=25.4
Q ss_pred hcCCEEEEEEecCCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 003876 497 KKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILV 546 (790)
Q Consensus 497 ~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~va~~~~~~vVVV 546 (790)
.+.|+||+.+|.+.... +.+.. ..-.+..++|+.+.+. +..+|++
T Consensus 70 ~~pd~Vii~~GtND~~~--~~~~~--~~~~~l~~li~~~~~~-~~~~ill 114 (191)
T PRK10528 70 HQPRWVLVELGGNDGLR--GFPPQ--QTEQTLRQIIQDVKAA-NAQPLLM 114 (191)
T ss_pred cCCCEEEEEeccCcCcc--CCCHH--HHHHHHHHHHHHHHHc-CCCEEEE
Confidence 36799999999875321 11111 1123445778877665 5444443
No 103
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=20.89 E-value=1.8e+02 Score=31.02 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=35.0
Q ss_pred EEEEEEEecCCCCCceEEEEEEecCCCCCCcccc----cccccccc-ccCCCCEEEEEEEec
Q 003876 697 HVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEK----QLIGFDRV-HTVAKGSKEISFGVD 753 (790)
Q Consensus 697 ~vsv~VtNtG~~~G~eVvQlY~~~p~~~~~~P~k----~L~gF~kv-~L~pGes~~V~~~l~ 753 (790)
.++++|+|+|+. .-.+|..+...... ..|.+ .+.-.=-+ +|+||+.+.|.|...
T Consensus 45 ~~sl~l~N~~~~--p~LvQsWv~~~~~~-~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 45 SVDVQLKNNDAI--PYIVQTWFDDGDMN-TSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred ceeEEEEcCCCC--cEEEEEEEeCCCCC-CCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence 578899999976 58999988643321 12322 13333333 489999999987654
No 104
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=20.60 E-value=1.7e+02 Score=26.35 Aligned_cols=46 Identities=22% Similarity=0.415 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCEEEEEEecCCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEe
Q 003876 489 FHEAVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLT 548 (790)
Q Consensus 489 ~~~a~~~a~~aDvvIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~va~~~~~~vVVVl~ 548 (790)
+.++.+..+.+|++|+++-.+. .+.....++++.+. . ++|+++|++
T Consensus 70 ~~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l~-~-~~~~i~v~N 115 (116)
T PF01926_consen 70 IRKFLEQISKSDLIIYVVDASN------------PITEDDKNILRELK-N-KKPIILVLN 115 (116)
T ss_dssp HHHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHHH-T-TSEEEEEEE
T ss_pred HHHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHHh-c-CCCEEEEEc
Confidence 3456666789999999996321 12244567888885 4 789998875
No 105
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=20.49 E-value=4.2e+02 Score=23.77 Aligned_cols=54 Identities=11% Similarity=0.035 Sum_probs=38.0
Q ss_pred ceEEEEEEEEecCCCCCceEEEEEEe----cCCCCCCccccccccccccccCCCCEEEEEEEec
Q 003876 694 LRFHVQISVTNAGDVDGSHVVMLFAR----VPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVD 753 (790)
Q Consensus 694 ~~v~vsv~VtNtG~~~G~eVvQlY~~----~p~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~ 753 (790)
+..++++.|+|+.+.+ ++|+.+ +.+.-...|. ...++.+.|.++|+.+|+..-+
T Consensus 32 g~~~~~~~l~N~~~~~----~~l~Yrf~WyD~~G~~v~~~--~~~w~~l~l~~~~~~~l~~~ap 89 (101)
T cd09030 32 GLLEAQATLSNTSSKP----LTLQYRFYWYDAQGLEVEPE--QEPWQSLTLPGGQTVTLQAVAP 89 (101)
T ss_pred CeEEEEEEEEeCCCCC----EEEEEEEEEECCCCCCcCCC--CCCCEEEEECCCCeEEEEEEcC
Confidence 4689999999998765 444444 3433222333 5788999999999999887654
No 106
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=20.42 E-value=1.3e+02 Score=34.12 Aligned_cols=60 Identities=27% Similarity=0.421 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCCCEEEEEeC-CCccccccccc-------ccCccEEEEccCCChhHHHHHHHHHhCC
Q 003876 529 MSLVTSVARTSKRPVILVLTG-GGPLDVSFAEA-------DSQISSILWIGYPGEAGAKALAEIIFGD 588 (790)
Q Consensus 529 ~~LI~~va~~~~~~vVVVl~~-g~P~~l~~~~~-------~~~v~AiL~a~~pGqe~g~AiAdVL~G~ 588 (790)
.++|++..+.+++||++|.+| |+++....+.. ...|+++|...-|=.-+..|+..+++|+
T Consensus 107 k~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~Gs~~a~~~~~sG~ 174 (389)
T PF02450_consen 107 KQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFGGSPKALRALLSGD 174 (389)
T ss_pred HHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCCCChHHHHHHhhhh
Confidence 467777766668899999886 66655432221 1368888888777666778999999998
Done!