BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003878
(789 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/781 (50%), Positives = 517/781 (66%), Gaps = 76/781 (9%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ V DYHG KI DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 2 SFQYPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 61
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 62 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 121
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYF 189
GT AL + SED +Y AY LS SGSD WV
Sbjct: 122 GTVALRGYAFSEDGEYFAYGLSASGSD--------------------WV----------- 150
Query: 190 FHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249
TI + V K V+ + KFS +AWTHD KG
Sbjct: 151 ---TIKFMKVDGAK-----------------------ELPDVLERVKFSCMAWTHDGKGM 184
Query: 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++ +++
Sbjct: 185 FYNSYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD 241
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ + N+
Sbjct: 242 DGRYVLLSIREGCDPVNRLWYCDLQQESSGIAG------ILKWVKLIDNFEGEYDYVTNE 295
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ YL D
Sbjct: 296 GTVFTFKTNRHSPNYRVINIDFTDPEESKWKVLVPEHEKDVLEWIACVRSNFLVLCYLHD 355
Query: 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487
VK LQ+ DL G+LL P+++GS+ S +++D+ +F FTSFL PGI+Y C+L E
Sbjct: 356 VKNTLQLHDLTTGALLKIFPLDVGSIVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 415
Query: 488 PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG 547
E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYGYGG
Sbjct: 416 LEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGG 474
Query: 548 FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 607
FNIS+TP++SVSR I +RH+G + +ANIRGGGEYGE WHKGG LA KQNCFDDF A+E
Sbjct: 475 FNISITPNYSVSRLIFVRHMGGILAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAE 534
Query: 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667
YLI GYT ++L I GGSNGGLLV AC NQRPDLFGC +A VGVMDML++HK+TIGHAW
Sbjct: 535 YLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW 594
Query: 668 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727
+D+GCS+ ++ F WL+KYSPLHNV+ P + QYPS LLLTADHDDRVVPLHSLK
Sbjct: 595 TTDYGCSDSKQHFEWLVKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLHSLK 650
Query: 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787
+AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L W
Sbjct: 651 FIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNVDW 707
Query: 788 V 788
+
Sbjct: 708 I 708
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/781 (50%), Positives = 516/781 (66%), Gaps = 76/781 (9%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYF 189
GT AL + SED +Y AY LS SGSD WV
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSD--------------------WV----------- 151
Query: 190 FHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249
TI + V K V+ + KFS +AWTHD KG
Sbjct: 152 ---TIKFMKVDGAK-----------------------ELPDVLERVKFSCMAWTHDGKGM 185
Query: 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++ +++
Sbjct: 186 FYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD 242
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ + N+
Sbjct: 243 DGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYVTNE 296
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ YL D
Sbjct: 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356
Query: 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487
VK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L E
Sbjct: 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416
Query: 488 PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG 547
E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYGYGG
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGG 475
Query: 548 FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 607
FNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF A+E
Sbjct: 476 FNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAE 535
Query: 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667
YLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIGHAW
Sbjct: 536 YLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW 595
Query: 668 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727
+D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLHSLK
Sbjct: 596 TTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLHSLK 651
Query: 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787
+AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L W
Sbjct: 652 FIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDW 708
Query: 788 V 788
+
Sbjct: 709 I 709
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/781 (50%), Positives = 515/781 (65%), Gaps = 76/781 (9%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYF 189
GT AL + SED +Y AY LS SGSD WV
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSD--------------------WV----------- 151
Query: 190 FHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249
TI + V K V+ + KFS +AWTHD KG
Sbjct: 152 ---TIKFMKVDGAK-----------------------ELPDVLERVKFSCMAWTHDGKGM 185
Query: 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++ +++
Sbjct: 186 FYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD 242
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ + N+
Sbjct: 243 DGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYVTNE 296
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ YL D
Sbjct: 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356
Query: 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487
VK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L E
Sbjct: 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416
Query: 488 PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG 547
E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYGYGG
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGG 475
Query: 548 FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 607
FNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF A+E
Sbjct: 476 FNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAE 535
Query: 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667
YLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIGHAW
Sbjct: 536 YLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW 595
Query: 668 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727
D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLHSLK
Sbjct: 596 TCDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLHSLK 651
Query: 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787
+AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L W
Sbjct: 652 FIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDW 708
Query: 788 V 788
+
Sbjct: 709 I 709
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/781 (50%), Positives = 516/781 (66%), Gaps = 76/781 (9%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYF 189
GT AL + SED +Y AY LS SGSD WV
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSD--------------------WV----------- 151
Query: 190 FHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249
TI + V K V+ + KFS +AWTHD KG
Sbjct: 152 ---TIKFMKVDGAK-----------------------ELPDVLERVKFSCMAWTHDGKGM 185
Query: 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++ +++
Sbjct: 186 FYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD 242
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ + N+
Sbjct: 243 DGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYVTNE 296
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ YL D
Sbjct: 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356
Query: 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487
VK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L E
Sbjct: 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416
Query: 488 PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG 547
E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYGYGG
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGG 475
Query: 548 FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 607
FNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF A+E
Sbjct: 476 FNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAE 535
Query: 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667
YLI GYT ++L I GG+NGGLLV C NQRPDLFGC +A VGVMDML++HK+TIGHAW
Sbjct: 536 YLIKEGYTSPKRLTINGGANGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW 595
Query: 668 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727
+D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLHSLK
Sbjct: 596 TTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLHSLK 651
Query: 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787
+AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L W
Sbjct: 652 FIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDW 708
Query: 788 V 788
+
Sbjct: 709 I 709
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/781 (50%), Positives = 516/781 (66%), Gaps = 76/781 (9%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYF 189
GT AL + SED +Y AY LS SGSD WV
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSD--------------------WV----------- 151
Query: 190 FHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249
TI + V K V+ + KFS +AWTHD KG
Sbjct: 152 ---TIKFMKVDGAK-----------------------ELPDVLERVKFSCMAWTHDGKGM 185
Query: 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++ +++
Sbjct: 186 FYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD 242
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ + N+
Sbjct: 243 DGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYVTNE 296
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ YL D
Sbjct: 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356
Query: 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487
VK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L E
Sbjct: 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416
Query: 488 PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG 547
E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG+GG
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGFGG 475
Query: 548 FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 607
FNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF A+E
Sbjct: 476 FNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAE 535
Query: 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667
YLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIGHAW
Sbjct: 536 YLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW 595
Query: 668 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727
+D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLHSLK
Sbjct: 596 TTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLHSLK 651
Query: 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787
+AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L W
Sbjct: 652 FIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDW 708
Query: 788 V 788
+
Sbjct: 709 I 709
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/781 (50%), Positives = 516/781 (66%), Gaps = 76/781 (9%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYF 189
GT AL + SED +Y AY LS SGSD WV
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSD--------------------WV----------- 151
Query: 190 FHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249
TI + V K V+ + KFS +AWTHD KG
Sbjct: 152 ---TIKFMKVDGAK-----------------------ELPDVLERVKFSCMAWTHDGKGM 185
Query: 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++ +++
Sbjct: 186 FYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCVEFPDEPKWMGGAELSD 242
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ + N+
Sbjct: 243 DGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYVTNE 296
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ YL D
Sbjct: 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356
Query: 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487
VK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L E
Sbjct: 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416
Query: 488 PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG 547
E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYGYGG
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGG 475
Query: 548 FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 607
FNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF A+E
Sbjct: 476 FNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAE 535
Query: 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667
YLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIGHAW
Sbjct: 536 YLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW 595
Query: 668 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727
+D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADH+DRVVPLHSLK
Sbjct: 596 TTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHNDRVVPLHSLK 651
Query: 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787
+AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L W
Sbjct: 652 FIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDW 708
Query: 788 V 788
+
Sbjct: 709 I 709
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/781 (50%), Positives = 516/781 (66%), Gaps = 76/781 (9%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYF 189
GT AL + SED +Y AY LS SGSD WV
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSD--------------------WV----------- 151
Query: 190 FHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249
TI + V K V+ + KFS +AWTHD KG
Sbjct: 152 ---TIKFMKVDGAK-----------------------ELPDVLERVKFSCMAWTHDGKGM 185
Query: 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++ +++
Sbjct: 186 FYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD 242
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+Y+++ I E DPVN+++YCDL G+ G +L +VKLID F+ +Y+ + N+
Sbjct: 243 DGRYVLLSIREGTDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYVTNE 296
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ YL D
Sbjct: 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356
Query: 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487
VK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L E
Sbjct: 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYCFTSFLSPGIIYHCDLTKEE 416
Query: 488 PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG 547
E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYGYGG
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGG 475
Query: 548 FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 607
FNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF A+E
Sbjct: 476 FNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAE 535
Query: 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667
YLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIGHAW
Sbjct: 536 YLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW 595
Query: 668 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727
+D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLHSLK
Sbjct: 596 TTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLHSLK 651
Query: 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787
+AT+QY++ S + Q NP++ ++ KAGHG G+PT K+I+E +D + F+A+ L W
Sbjct: 652 FIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGMPTAKVIEEVSDMFAFIARCLNIDW 708
Query: 788 V 788
+
Sbjct: 709 I 709
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/781 (50%), Positives = 515/781 (65%), Gaps = 76/781 (9%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYF 189
GT AL + SED +Y AY LS SGSD WV
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSD--------------------WV----------- 151
Query: 190 FHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249
TI + V K V+ + KFS +AWTHD KG
Sbjct: 152 ---TIKFMKVDGAK-----------------------ELPDVLERVKFSCMAWTHDGKGM 185
Query: 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++ +++
Sbjct: 186 FYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD 242
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ + N+
Sbjct: 243 DGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYVTNE 296
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ YL D
Sbjct: 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356
Query: 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487
VK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L E
Sbjct: 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416
Query: 488 PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG 547
E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYGYGG
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGG 475
Query: 548 FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 607
FNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF A+E
Sbjct: 476 FNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAE 535
Query: 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667
YLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIGHAW
Sbjct: 536 YLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW 595
Query: 668 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727
+D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADH DRVVPLHSLK
Sbjct: 596 TTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHADRVVPLHSLK 651
Query: 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787
+AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L W
Sbjct: 652 FIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDW 708
Query: 788 V 788
+
Sbjct: 709 I 709
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/781 (50%), Positives = 515/781 (65%), Gaps = 76/781 (9%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYF 189
GT AL + SED +Y AY LS SGSD WV
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSD--------------------WV----------- 151
Query: 190 FHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249
TI + V K V+ + KFS +AWTHD KG
Sbjct: 152 ---TIKFMKVDGAK-----------------------ELPDVLERVKFSCMAWTHDGKGM 185
Query: 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++ +++
Sbjct: 186 FYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD 242
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ + N+
Sbjct: 243 DGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYVTNE 296
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ YL D
Sbjct: 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356
Query: 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487
VK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L E
Sbjct: 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416
Query: 488 PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG 547
E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYGYGG
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGG 475
Query: 548 FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 607
FNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF A+E
Sbjct: 476 FNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAE 535
Query: 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667
YLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIGHAW
Sbjct: 536 YLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW 595
Query: 668 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727
+D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLHSLK
Sbjct: 596 TTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLHSLK 651
Query: 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787
+AT+QY++ S + Q NP++ ++ KAG G G PT K+I+E +D + F+A+ L W
Sbjct: 652 FIATLQYIVGRSRK---QNNPLLIHVDTKAGAGAGKPTAKVIEEVSDMFAFIARCLNIDW 708
Query: 788 V 788
+
Sbjct: 709 I 709
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/781 (50%), Positives = 514/781 (65%), Gaps = 76/781 (9%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDCPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYF 189
GT AL + SED +Y AY LS SGSD WV
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSD--------------------WV----------- 151
Query: 190 FHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249
TI + V K V+ + KFS +AWTHD KG
Sbjct: 152 ---TIKFMKVDGAK-----------------------ELPDVLERVKFSCMAWTHDGKGM 185
Query: 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++ +++
Sbjct: 186 FYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD 242
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+Y+++ I E DPVN+++YCDL G+ G +L +VKLID F+ +Y+ + N+
Sbjct: 243 DGRYVLLSIREGTDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYVTNE 296
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ YL D
Sbjct: 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356
Query: 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487
VK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L E
Sbjct: 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416
Query: 488 PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG 547
E ++FRE G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYGYGG
Sbjct: 417 LEPRVFREVTCKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGG 475
Query: 548 FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 607
FNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF A+E
Sbjct: 476 FNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAE 535
Query: 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667
YLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIGHAW
Sbjct: 536 YLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW 595
Query: 668 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727
+D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLHSLK
Sbjct: 596 TTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLHSLK 651
Query: 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787
+AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L W
Sbjct: 652 FIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDW 708
Query: 788 V 788
+
Sbjct: 709 I 709
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/781 (50%), Positives = 513/781 (65%), Gaps = 76/781 (9%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVXDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQXPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYF 189
GT AL + SED +Y AY LS SGSD WV
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSD--------------------WV----------- 151
Query: 190 FHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249
TI + V K V+ + KFS +AWTHD KG
Sbjct: 152 ---TIKFMKVDGAK-----------------------ELPDVLERVKFSXMAWTHDGKGM 185
Query: 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++ +++
Sbjct: 186 FYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD 242
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+Y+++ I E DPVN+++YCDL G+ G +L +VKLID F+ +Y+ + N+
Sbjct: 243 DGRYVLLSIREGXDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYVTNE 296
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ YL D
Sbjct: 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356
Query: 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487
VK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L E
Sbjct: 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416
Query: 488 PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG 547
E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYGYGG
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGG 475
Query: 548 FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 607
FNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF A+E
Sbjct: 476 FNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAE 535
Query: 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667
YLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIGHAW
Sbjct: 536 YLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW 595
Query: 668 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727
+D+G S+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLHSLK
Sbjct: 596 TTDYGXSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLHSLK 651
Query: 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787
+AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L W
Sbjct: 652 FIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDW 708
Query: 788 V 788
+
Sbjct: 709 I 709
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 265/779 (34%), Positives = 386/779 (49%), Gaps = 110/779 (14%)
Query: 11 LQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKL 70
+ YP A R E VVD HGV++ DPYRWLED A EV+ ++ Q L R+ L
Sbjct: 1 MSYP-ATRAEQVVDTLHGVQVADPYRWLEDEKAPEVQTWMTAQNAHAREALAKFPGREAL 59
Query: 71 REKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDG 130
+ +LF + P +R ++FY + +++LY + + KVLLDPN S DG
Sbjct: 60 AARFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDG 119
Query: 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFF 190
T +L +A+S+ G A + D+ V
Sbjct: 120 TVSLG-----------TWAVSWDGKKVAFAQKPNAADEAV-------------------L 149
Query: 191 HLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFF 250
H+ V S +S V+ K+++ WT DSKGF+
Sbjct: 150 HVID--------------------------VDSGEWSKVDVIEGGKYATPKWTPDSKGFY 183
Query: 251 YSRYPAPKEGKDMDAGTETDSNL-YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
Y P D + D Y YH LGT+ S+D + + P ++
Sbjct: 184 YEWLP-------TDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR 236
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+YL + I N VY+ KR G F L+ G A+YEV A
Sbjct: 237 DGKYLFVYILRGWSE-NDVYW--------------KRPGEKDFRLLVKGVGAKYEVHAWK 281
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
D F LT++ AP+ ++ VD +P W E++PE L S + V + + YL D
Sbjct: 282 DR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVG-GHLSLEYLKD 339
Query: 428 VKYVLQIRDLKNGSLLH-QLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486
+++ LK + QLP + N + D ++ FTSF P +Y+ ++ T
Sbjct: 340 ATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYV-FTSFTTPRQIYKTSVSTG 398
Query: 487 TPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYG 546
E+ + + +P + ++ V QVF SKDG TK+PMF+V +K++K DG+ P LLYGYG
Sbjct: 399 KSEL--WAKVDVP-MNPEQYQVEQVFYASKDG-TKVPMFVVHRKDLKRDGNAPTLLYGYG 454
Query: 547 GFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISAS 606
GFN+++ +F S + G V+ +AN+RGGGEYG+ WH G L KKQN FDDF +A+
Sbjct: 455 GFNVNMEANFR-SSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDDFHAAA 513
Query: 607 EYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHA 666
EYL+ YTQ ++L I GGSNGGLLVGA + QRP+L+G + V ++DM+RYH F G
Sbjct: 514 EYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSGRT 573
Query: 667 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSL 726
W+ ++G +E+ E+F L YSP H+VR PD +YP+ L++ ADHDDRV P+H+
Sbjct: 574 WIPEYGTAEKPEDFKTLHAYSPYHHVR------PD--VRYPALLMMAADHDDRVDPMHAR 625
Query: 727 KLLATMQYVLCTSLENSPQTNPIIG--RIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783
K +A +Q NSP NP RIE AGHG K I+ + D Y F+ ++L
Sbjct: 626 KFVAAVQ--------NSP-GNPATALLRIEANAGHGGADQVAKAIESSVDLYSFLFQVL 675
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 225/551 (40%), Positives = 290/551 (52%), Gaps = 44/551 (7%)
Query: 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 295
KFS +AW + YSR+ PKEG+ A N + H LGT QS D +
Sbjct: 210 KFSGLAWLGND-ALLYSRFAEPKEGQAFQA-----LNYNQTVWLHRLGTPQSADQPVFAT 263
Query: 296 PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 355
PE PK V+ DG+++V+ E DPVN V+ ++ G P L
Sbjct: 264 PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG-----------PVTAL 312
Query: 356 IDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV 415
I AQ++ + F++ AP KI+RVDL F+ + +D LES +
Sbjct: 313 IPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES-VGI 371
Query: 416 NLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP 475
N++ SY+ D K + DL IGS + +S R D ++SF+SF P
Sbjct: 372 AGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQP 431
Query: 476 GIVYQCNLKTE--TPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIK 533
V + T TP E + FD ++F V QVF PSKDG TK+PMFIV +K+ K
Sbjct: 432 ATVLALDPATAKTTPW-----EPVHLTFDPADFRVEQVFYPSKDG-TKVPMFIVRRKDAK 485
Query: 534 LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 593
G P LLYGYGGFN+++TP FS + GA F +AN+RGGGEYG+ WH G
Sbjct: 486 --GPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGA-FALANLRGGGEYGDAWHDAGRRD 542
Query: 594 KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653
KKQN FDDFI+A E+LI+ G T L IEGGSNGGLL+GA NQRPDLF A VGVM
Sbjct: 543 KKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVM 602
Query: 654 DMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLT 713
DMLR+ +FT G WV D+G E+E ++ L +YSP HNVR YP+ L+ T
Sbjct: 603 DMLRFDQFTAGRYWVDDYGYPEKEADWRVLRRYSPYHNVR--------SGVDYPAILVTT 654
Query: 714 ADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAA 773
AD DDRVVP HS K A +Q P + RIE +AGHG G P K I+E A
Sbjct: 655 ADTDDRVVPGHSFKYTAALQTAAIGP-------KPHLIRIETRAGHGSGKPIDKQIEETA 707
Query: 774 DRYGFMAKMLG 784
D F+A G
Sbjct: 708 DVQAFLAHFTG 718
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 99/187 (52%), Gaps = 14/187 (7%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLE---DPDAEEVKDFVQKQVELT 57
M SL S Q P+ V+D+ G K+ DP+RWLE DA+ V +VQ Q T
Sbjct: 34 MPSLPPYPASPQVPL-------VEDHFGEKVSDPWRWLEADVRTDAK-VAAWVQAQSAYT 85
Query: 58 DSVLKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDS---LD 114
+ LK R L +++ L D R+ P +RG FY N+GL QS L V+ + +
Sbjct: 86 AAYLKQLPERAALEKRMKALIDYERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVG 145
Query: 115 AKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA 174
K +VLLDPNT + DG AL + S+D + LAY++ GSDW T+K + + D AD
Sbjct: 146 TKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE 205
Query: 175 LSWVCFC 181
L WV F
Sbjct: 206 LKWVKFS 212
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 213/554 (38%), Positives = 311/554 (56%), Gaps = 49/554 (8%)
Query: 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK- 294
KFS I+W + +GFFYS Y P +G ++ A T+ H+ Y+H LGT Q +D L +
Sbjct: 176 KFSGISWLGN-EGFFYSSYDKP-DGSELSARTDQ-----HKVYFHRLGTAQEDDRLVFGA 228
Query: 295 -DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 353
+H +Y+ VTED ++L++ N N++Y DLS P +
Sbjct: 229 IPAQHHRYV-GATVTEDDRFLLISAA-NSTSGNRLYVKDLSQENA------------PLL 274
Query: 354 KLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLES 411
+ DA ++ N + LTN+DAP +++ VD P W ++IPE ++ VL
Sbjct: 275 TVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VLTV 333
Query: 412 ATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 471
+ + Y+ D ++ D + + +GSV+ + + +D ++ F +
Sbjct: 334 HSGSGY--LFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFEN 391
Query: 472 FLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKN 531
+ P +Y+ K+ + ++R + P F ++ Q F SKDG T++P+ I +K
Sbjct: 392 YAQPPTLYRFEPKSGA--ISLYRASAAP-FKPEDYVSEQRFYQSKDG-TRVPLIISYRKG 447
Query: 532 IKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591
+KLDGS+P +LYGYGGF++S+TPSFSVS + LG V+ +AN+RGGGEYG+ WH G
Sbjct: 448 LKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGT 506
Query: 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651
KQN FDDFI+A+EYL + GYT++ +L I GGSNGGLLVGA + QRPDL AL VG
Sbjct: 507 QQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVG 566
Query: 652 VMDMLRYHKFTIGHAWVSDFGCSEEEEEFY-WLIKYSPLHNVRRPWEQNPDKPFQYPSTL 710
V+DMLRYH FT G W D+G S + E + +L YSPLHNVR YPST+
Sbjct: 567 VLDMLRYHTFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVR--------PGVSYPSTM 618
Query: 711 LLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMID 770
+ TADH+DRVVP HS K AT+Q ++ +P + RIE AGHG G P K+I+
Sbjct: 619 VTTADHNDRVVPAHSFKFAATLQ-------ADNAGPHPQLIRIETNAGHGAGTPVAKLIE 671
Query: 771 EAADRYGFMAKMLG 784
++AD Y F +G
Sbjct: 672 QSADIYAFTLYEMG 685
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Query: 11 LQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKL 70
L YPV R+ E V D Y G + DPYRWLED + E + +V+ Q +T L R +
Sbjct: 10 LHYPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAI 68
Query: 71 REKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDG 130
+EK+ ++ + APF+ G +++F N GLQ Q+VL+ Q A+V LDPNTLS DG
Sbjct: 69 KEKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDG 127
Query: 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168
T AL ++S S D + LAY+LS +GSDW I LM +E +
Sbjct: 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESK 165
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust.
Identities = 214/554 (38%), Positives = 309/554 (55%), Gaps = 49/554 (8%)
Query: 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK- 294
KFS I+W + +GFFYS Y P +G ++ A T+ H+ Y+H LGT Q +D L +
Sbjct: 176 KFSGISWLGN-EGFFYSSYDKP-DGSELSARTDQ-----HKVYFHRLGTAQEDDRLVFGA 228
Query: 295 -DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 353
+H +Y+ VTED ++L++ N N++Y DLS P +
Sbjct: 229 IPAQHHRYV-GATVTEDQRFLLISAA-NSTSGNRLYVKDLSQENA------------PLL 274
Query: 354 KLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLES 411
+ DA ++ N + LTN+DAP +++ VD P W ++IPE ++ VL
Sbjct: 275 TVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VLTV 333
Query: 412 ATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 471
+ + Y+ D ++ D + + +GSV+ + D ++ F +
Sbjct: 334 HSGSGY--LFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGYWWDPALYFGFEN 391
Query: 472 FLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKN 531
+ P +Y+ K+ + ++R + P F ++ Q F SKDG T++P+ I +K
Sbjct: 392 YAQPPTLYRFEPKSGA--ISLYRASAAP-FKPEDYVSEQRFYQSKDG-TRVPLIISYRKG 447
Query: 532 IKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591
+KLDGS+P +LYGYGGF++S+TPSFSVS + LG V+ +AN+RGGGEYG+ WH G
Sbjct: 448 LKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGT 506
Query: 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651
KQN FDDFI+A+EYL + GYT++ +L I GGSNGGLLVGA + QRPDL AL VG
Sbjct: 507 QQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVG 566
Query: 652 VMDMLRYHKFTIGHAWVSDFGCSEEEEEFY-WLIKYSPLHNVRRPWEQNPDKPFQYPSTL 710
V+DMLRYH FT G W D+G S + E + +L YSPLHNVR YPST+
Sbjct: 567 VLDMLRYHTFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVR--------PGVSYPSTM 618
Query: 711 LLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMID 770
+ TADHDDRVVP HS K AT+Q ++ +P + RIE AGHG G P K+I+
Sbjct: 619 VTTADHDDRVVPAHSFKFAATLQ-------ADNAGPHPQLIRIETNAGHGAGTPVAKLIE 671
Query: 771 EAADRYGFMAKMLG 784
++AD Y F +G
Sbjct: 672 QSADIYAFTLYEMG 685
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 95/158 (60%), Gaps = 2/158 (1%)
Query: 11 LQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKL 70
L YPV R+ E V D Y G + DPYRWLED + E + +V+ Q +T L R +
Sbjct: 10 LHYPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAI 68
Query: 71 REKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDG 130
+EK+ ++ + APF G +++F N GLQ Q+VL+ Q A+V LDPNTLS DG
Sbjct: 69 KEKLAASWNYAKEGAPFWWGRYHYFFKNDGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDG 127
Query: 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168
T AL ++S S D + LAY+LS +GSDW I LM +E +
Sbjct: 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESK 165
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 213/549 (38%), Positives = 305/549 (55%), Gaps = 49/549 (8%)
Query: 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK- 294
KFS I+W + +GFFYS Y P +G ++ A T+ H+ Y+H LGT Q +D L +
Sbjct: 176 KFSGISWLGN-EGFFYSSYDKP-DGSELSARTDQ-----HKVYFHRLGTAQEDDRLVFGA 228
Query: 295 -DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 353
+H +Y+ VTED ++L++ N N++Y DLS P +
Sbjct: 229 IPAQHHRYV-GATVTEDDRFLLISAA-NSTSGNRLYVKDLSQENA------------PLL 274
Query: 354 KLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLES 411
+ DA ++ N + LTN+DAP +++ VD P W ++IPE ++ VL
Sbjct: 275 TVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VLTV 333
Query: 412 ATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 471
+ + Y D ++ D + + +GSV+ + + +D ++ F +
Sbjct: 334 HSGSGY--LFAEYXVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFEN 391
Query: 472 FLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKN 531
+ P +Y+ K+ + ++R + P F ++ Q F SKDG T++P+ I +K
Sbjct: 392 YAQPPTLYRFEPKSGA--ISLYRASAAP-FKPEDYVSEQRFYQSKDG-TRVPLIISYRKG 447
Query: 532 IKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591
+KLDGS+P +LYGYGGF++S+TPSFSVS + LG V+ +AN+RGGGEYG+ WH G
Sbjct: 448 LKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGT 506
Query: 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651
KQN FDDFI+A+EYL + GYT++ +L I GGSNGGLLVGA QRPDL AL VG
Sbjct: 507 QQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLXRVALPAVG 566
Query: 652 VMDMLRYHKFTIGHAWVSDFGCSEEEEE-FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTL 710
V+D LRYH FT G W D+G S + E F +L YSPLHNVR YPST
Sbjct: 567 VLDXLRYHTFTAGTGWAYDYGTSADSEAXFDYLKGYSPLHNVR--------PGVSYPSTX 618
Query: 711 LLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMID 770
+ TADHDDRVVP HS K AT+Q ++ +P + RIE AGHG G P K+I+
Sbjct: 619 VTTADHDDRVVPAHSFKFAATLQ-------ADNAGPHPQLIRIETNAGHGAGTPVAKLIE 671
Query: 771 EAADRYGFM 779
++AD Y F
Sbjct: 672 QSADIYAFT 680
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 95/158 (60%), Gaps = 2/158 (1%)
Query: 11 LQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKL 70
L YPV R+ E V D Y G + DPYRWLED + E + +V+ Q +T L R +
Sbjct: 10 LHYPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAI 68
Query: 71 REKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDG 130
+EK+ ++ + APF+ G +++F N GLQ Q+VL+ Q A+V LDPNTLS DG
Sbjct: 69 KEKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDG 127
Query: 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168
T AL ++S S D + LAY+LS +GSDW I L +E +
Sbjct: 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLXDVESK 165
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 361 bits (926), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 213/549 (38%), Positives = 305/549 (55%), Gaps = 49/549 (8%)
Query: 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK- 294
KFS I+W + +GFFYS Y P +G ++ A T+ H+ Y+H LGT Q +D L +
Sbjct: 176 KFSGISWLGN-EGFFYSSYDKP-DGSELSARTDQ-----HKVYFHRLGTAQEDDRLVFGA 228
Query: 295 -DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 353
+H +Y+ VTED ++L++ N N++Y DLS P +
Sbjct: 229 IPAQHHRYV-GATVTEDDRFLLISAA-NSTSGNRLYVKDLSQENA------------PLL 274
Query: 354 KLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLES 411
+ DA ++ N + LTN+DAP +++ VD P W ++IPE ++ VL
Sbjct: 275 TVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VLTV 333
Query: 412 ATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 471
+ + Y D ++ D + + +GSV+ + + +D ++ F +
Sbjct: 334 HSGSGY--LFAEYXVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFEN 391
Query: 472 FLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKN 531
+ P +Y+ K+ + ++R + P F ++ Q F SKDG T++P+ I +K
Sbjct: 392 YAQPPTLYRFEPKSGA--ISLYRASAAP-FKPEDYVSEQRFYQSKDG-TRVPLIISYRKG 447
Query: 532 IKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591
+KLDGS+P +LYGYGGF++S+TPSFSVS + LG V+ +AN+RGGGEYG+ WH G
Sbjct: 448 LKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGT 506
Query: 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651
KQN FDDFI+A+EYL + GYT++ +L I GGSNGGLLVGA QRPDL AL VG
Sbjct: 507 QQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLXRVALPAVG 566
Query: 652 VMDMLRYHKFTIGHAWVSDFGCSEEEEE-FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTL 710
V+D LRYH FT G W D+G S + E F +L YSPLHNVR YPST
Sbjct: 567 VLDXLRYHTFTAGTGWAYDYGTSADSEAXFDYLKGYSPLHNVR--------PGVSYPSTX 618
Query: 711 LLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMID 770
+ TADHDDRVVP HS K AT+Q ++ +P + RIE AGHG G P K+I+
Sbjct: 619 VTTADHDDRVVPAHSFKFAATLQ-------ADNAGPHPQLIRIETNAGHGAGTPVAKLIE 671
Query: 771 EAADRYGFM 779
++AD Y F
Sbjct: 672 QSADIYAFT 680
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 95/158 (60%), Gaps = 2/158 (1%)
Query: 11 LQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKL 70
L YPV R+ E V D Y G + DPYRWLED + E + +V+ Q +T L R +
Sbjct: 10 LHYPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAI 68
Query: 71 REKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDG 130
+EK+ ++ + APF+ G +++F N GLQ Q+VL+ Q A+V LDPNTLS DG
Sbjct: 69 KEKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDG 127
Query: 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168
T AL ++S S D + LAY+LS +GSDW I L +E +
Sbjct: 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLXDVESK 165
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 176/340 (51%), Gaps = 25/340 (7%)
Query: 445 QLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRS 504
+LP + ++ +S+ E+ I+ + ++P +Y L +T E+KI R+ + FD
Sbjct: 391 KLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIY---LWVKTHELKIIRKALY-SFDSE 445
Query: 505 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILM 564
+ + Q S DG KIP F+V KK IK DG +P LL YGGF + P FS + +
Sbjct: 446 NYVLEQKEATSFDG-VKIPYFLVYKKGIKFDGKNPTLLEAYGGFQVINAPYFSRIKNEVW 504
Query: 565 RHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEG 624
V +ANIRGGGE+G EWHK K+Q F+DF + SE LI T L I+G
Sbjct: 505 VKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYLGIKG 564
Query: 625 GSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLI 684
GSNGGLLV + QRP+LFG V ++DM+RY +F GH+WV+++G E + +
Sbjct: 565 GSNGGLLVSVAMTQRPELFGAVACEVPILDMIRYKEFGAGHSWVTEYGDPEIPNDLLHIK 624
Query: 685 KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSP 744
KY+PL N+ +YP+ L+ + D RV P H +YVL +P
Sbjct: 625 KYAPLENLSLTQ--------KYPTVLITDSVLDQRVHPWHG----RIFEYVLA----QNP 668
Query: 745 QTNPIIGRIERK-AGHGVGLPTQKMIDEAADRYGFMAKML 783
T +E K +GHG G ++ + + Y F A L
Sbjct: 669 NTKTYF--LESKDSGHGSGSDLKESANYFINLYTFFANAL 706
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 179 bits (454), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 154/573 (26%), Positives = 266/573 (46%), Gaps = 80/573 (13%)
Query: 240 IAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHP 299
I W D FY T+ ++ ++ + H +G QSED+ C + +P
Sbjct: 226 IVWGPDHTSLFYV--------------TKDETLRENKVWRHVMGKLQSEDV-CLYEEHNP 270
Query: 300 KYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA--LPEGLEGFKKRDGLLPFVKLID 357
+FS + + +CI +V+ DL LE + R+
Sbjct: 271 --LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK--------- 319
Query: 358 GFDAQYEVIANDDTVFTFLTNKD-APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN 416
+Y+V + + LTN+ A +K++ +P+DW V+ + DV + AV
Sbjct: 320 --GVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR 377
Query: 417 LNQMIVSY----LSDVKYVL---QIRDLKNGSLLHQLPIE--IGSVNAISARR---EDSV 464
N ++V+ L+ + ++ Q K G+ L ++ +E I +V+ + ++ E+
Sbjct: 378 SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPT 437
Query: 465 VFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPM 524
+ ++S P + + + + RE + GFD + + V + F + D TKIP+
Sbjct: 438 FRMEYSSLATPNTWFDVSPQDHSRTAVKVRE-VGGGFDAANYKVERRFATAPD-QTKIPL 495
Query: 525 FIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHL-----GAVFCIANIRGG 579
+V K++ + PC+LYGYG + +S+ P FS+ +HL G +F IA+IRGG
Sbjct: 496 SVVYHKDLDMSQPQPCMLYGYGSYGLSMDPQFSI------QHLPYCDRGMIFAIAHIRGG 549
Query: 580 GEYGEEWHKGGA-LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 638
E G W++ GA K+N F DFI+A+E+L++A T +L EG S GGLL+GA +N
Sbjct: 550 SELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNM 609
Query: 639 RPDLFGCALAHVGVMDMLRYH-----KFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVR 693
RPDLF ALA V +D++ T G W ++G E + + +++ YSP+ NVR
Sbjct: 610 RPDLFKVALAGVPFVDVMTTMCDPSIPLTTGE-W-EEWGNPNEYKYYDYMLSYSPMDNVR 667
Query: 694 RPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRI 753
+YP+ ++ HD RV K ++ ++ E N I+ I
Sbjct: 668 AQ---------EYPNIMVQCGLHDPRVAYWEPAKWVSKLR-------ECKTDNNEILLNI 711
Query: 754 ERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786
+ ++GH K E+A + F+ K L ++
Sbjct: 712 DMESGHFSAKDRYKFWKESAIQQAFVCKHLKST 744
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 11/148 (7%)
Query: 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG-FNISVTPSFSVSRTILMRHLGA---- 569
+ DG T + ++ +P +Y YGG + +VT S+ L A
Sbjct: 494 AADGKTPLNYSVIKPAGFDPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGY 553
Query: 570 -VFCIANIRGGGEYGEEWHKGGALAKKQNCFD--DFISASEYLISAGYTQSRKLCIEGGS 626
VF + N RG G ++ GGAL KQ + D + +L + ++ ++G S
Sbjct: 554 VVFSLDN-RGTPRRGRDF--GGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWS 610
Query: 627 NGGLLVGACINQRPDLFGCALAHVGVMD 654
NGG + + + D + C +A V D
Sbjct: 611 NGGYMTLMLLAKASDSYACGVAGAPVTD 638
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 523 PMFIVSKKNIKLDGSHPCLLYGYGG-FNISVTPSFSVSR-TILMRHLGAVFCIANIRGGG 580
P F SKK +P L+ YGG + SV F+V+ + L G V + + RG
Sbjct: 488 PQFDRSKK-------YPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTA 540
Query: 581 EYGEEWHKGGALAKKQNCFD--DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 638
G++ A+ +K ++ D I+A I G+ +++ I G S GG + +
Sbjct: 541 FQGDKLLY--AVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALAS 598
Query: 639 RPDLFGCALA 648
LF C +A
Sbjct: 599 GTGLFKCGIA 608
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 10/154 (6%)
Query: 503 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NISVTPSFSVSR 560
RS V+V S DGS ++P +++ G L++G G F + +F+ S
Sbjct: 328 RSIAGSRLVWVESFDGS-RVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDSWDTFAASL 385
Query: 561 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 620
H+ + N RG YGEEW +D +A+ + +G +L
Sbjct: 386 AAAGFHV----VMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--EL 439
Query: 621 CIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654
I G S GG + + +P LF +A V+D
Sbjct: 440 YIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVD 473
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 10/154 (6%)
Query: 503 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NISVTPSFSVSR 560
RS V+V S DGS ++P +++ G L++G G F + +F+ S
Sbjct: 308 RSIAGSRLVWVESFDGS-RVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDSWDTFAASL 365
Query: 561 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 620
H+ + N RG YGEEW +D +A+ + +G +L
Sbjct: 366 AAAGFHV----VMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--EL 419
Query: 621 CIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654
I G S GG + + +P LF +A V+D
Sbjct: 420 YIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVD 453
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 10/154 (6%)
Query: 503 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NISVTPSFSVSR 560
RS V+V S DGS ++P +++ G L++G G F + +F+ S
Sbjct: 328 RSIAGSRLVWVESFDGS-RVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDSWDTFAASL 385
Query: 561 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 620
H+ + N RG YGEEW +D +A+ + +G +L
Sbjct: 386 AAAGFHV----VMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--EL 439
Query: 621 CIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654
I G S GG + + +P LF +A V+D
Sbjct: 440 YIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVD 473
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 10/154 (6%)
Query: 503 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NISVTPSFSVSR 560
RS V+V S DGS ++P +++ G L++G G F + +F+ S
Sbjct: 328 RSIAGSRLVWVESFDGS-RVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDSWDTFAASL 385
Query: 561 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 620
H+ + N RG YGEEW +D +A+ + +G +L
Sbjct: 386 AAAGFHV----VMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--EL 439
Query: 621 CIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654
I G S GG + + +P LF +A V+D
Sbjct: 440 YIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVD 473
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 18/150 (12%)
Query: 501 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSR 560
+ + F + P D S K P+ I PC F ++ + +
Sbjct: 483 LNETRFWYQMILPPHFDKSKKYPLLIDVYAG-------PCSQKADAAFRLNWATYLASTE 535
Query: 561 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD--DFISASEYLISAGYTQSR 618
I++ RG G G++ A+ K+ + D I A+ + G+ S+
Sbjct: 536 NIIVASFDG-------RGSGYQGDKIMH--AINKRLGTLEVEDQIEAARQFLKMGFVDSK 586
Query: 619 KLCIEGGSNGGLLVGACINQRPDLFGCALA 648
++ I G S GG + + +F C +A
Sbjct: 587 RVAIWGWSYGGYVTSMVLGSGSGVFKCGIA 616
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 10/154 (6%)
Query: 503 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NISVTPSFSVSR 560
RS V+V S DGS ++P +++ G L++G G F + +F+ S
Sbjct: 328 RSIAGSRLVWVESFDGS-RVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDSWDTFAASL 385
Query: 561 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 620
H+ + N RG YGEEW +D +A+ + +G +L
Sbjct: 386 AAAGFHV----VMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--EL 439
Query: 621 CIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654
I G + GG + + +P LF +A V+D
Sbjct: 440 YIMGYAYGGYMTLCALTMKPGLFKAGVAGASVVD 473
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 10/154 (6%)
Query: 503 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NISVTPSFSVSR 560
RS V+V S DGS ++P +++ G L+ G G F + +F+ S
Sbjct: 328 RSIAGSRLVWVESFDGS-RVPTYVLESGRAPTPGPTVVLVAG-GPFAEDSDSWDTFAASL 385
Query: 561 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 620
H+ + N RG YGEEW +D +A+ + +G +L
Sbjct: 386 AAAGFHV----VMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--EL 439
Query: 621 CIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654
I G S GG + + +P LF +A V+D
Sbjct: 440 YIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVD 473
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 4/148 (2%)
Query: 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS-VTPSFSVSRT---ILMRHLGAV 570
+ DG T + + + +P ++Y YGG + VT ++ S I M G
Sbjct: 462 AADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYA 521
Query: 571 FCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGL 630
+ RG G + + Q D + ++L S + + ++ + G S GG
Sbjct: 522 VFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGF 581
Query: 631 LVGACINQRPDLFGCALAHVGVMDMLRY 658
+ + D+F +A V+D RY
Sbjct: 582 MTTNLMLTHGDVFKVGVAGGPVIDWNRY 609
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 4/148 (2%)
Query: 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS-VTPSFSVSRT---ILMRHLGAV 570
+ DG T + + + +P ++Y YGG + VT ++ S I M G
Sbjct: 462 AADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYA 521
Query: 571 FCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGL 630
+ RG G + + Q D + ++L S + + ++ + G S GG
Sbjct: 522 VFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGF 581
Query: 631 LVGACINQRPDLFGCALAHVGVMDMLRY 658
+ + D+F +A V+D RY
Sbjct: 582 MTTNLMLTHGDVFKVGVAGGPVIDWNRY 609
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 4/148 (2%)
Query: 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS-VTPSFSVSRT---ILMRHLGAV 570
+ DG T + + + +P ++Y YGG + VT ++ S I M G
Sbjct: 462 AADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYA 521
Query: 571 FCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGL 630
+ RG G + + Q D + ++L S + + ++ + G + GG
Sbjct: 522 VFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWAYGGF 581
Query: 631 LVGACINQRPDLFGCALAHVGVMDMLRY 658
+ + D+F +A V+D RY
Sbjct: 582 MTTNLMLTHGDVFKVGVAGGPVIDWNRY 609
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 32/69 (46%)
Query: 94 FYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYS 153
F H TG P + + +D+ + + + + T ++KV+ + +Y YA + +
Sbjct: 25 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 84
Query: 154 GSDWATIKL 162
G D + +L
Sbjct: 85 GKDSCSAQL 93
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 32/69 (46%)
Query: 94 FYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYS 153
F H TG P + + +D+ + + + + T ++KV+ + +Y YA + +
Sbjct: 25 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 84
Query: 154 GSDWATIKL 162
G D + +L
Sbjct: 85 GKDSCSAQL 93
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 32/69 (46%)
Query: 94 FYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYS 153
F H TG P + + +D+ + + + + T ++KV+ + +Y YA + +
Sbjct: 217 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 276
Query: 154 GSDWATIKL 162
G D + +L
Sbjct: 277 GKDSCSAQL 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,367,563
Number of Sequences: 62578
Number of extensions: 1146292
Number of successful extensions: 2692
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2521
Number of HSP's gapped (non-prelim): 58
length of query: 789
length of database: 14,973,337
effective HSP length: 107
effective length of query: 682
effective length of database: 8,277,491
effective search space: 5645248862
effective search space used: 5645248862
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)